BLAST/PSIBLAST alignment of GI: 254780865 and GI: 209548875 at iteration 1
>gi|209548875|ref|YP_002280792.1| NADH dehydrogenase subunit L [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 666
>gi|209534631|gb|ACI54566.1| proton-translocating NADH-quinone oxidoreductase, chain L [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 666
 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/663 (60%), Positives = 491/663 (74%), Gaps = 7/663 (1%)

Query: 4   IYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGH-DVQVV 62
           +Y+ IVFLPLIGA+ +G FGR +G + ++  TS LM+I A LSW VF+ +G GH +   +
Sbjct: 3   LYKAIVFLPLIGAIVAGLFGRAIGAKASEYVTSGLMIIAAILSWIVFFTVGMGHAEGGPI 62

Query: 63  KREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYL 122
           K E+  WI   G+D+ W LR+DTL+SVM +VVN++S +VH+YSIGYMH DPHRPRFF+YL
Sbjct: 63  KVEVLRWIQSGGIDVSWSLRVDTLTSVMLIVVNTVSTLVHVYSIGYMHTDPHRPRFFAYL 122

Query: 123 SFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLG 182
           S FTFAML+LV++DNL QMFFGWEGVGLASYLLIGFW  K SA  A+MKAF+VNR+GD G
Sbjct: 123 SLFTFAMLMLVTADNLAQMFFGWEGVGLASYLLIGFWFKKPSATAAAMKAFIVNRVGDFG 182

Query: 183 LILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242
            +L I+ +  LF S++FD +F NAS++         G  S    + FG+ +    ++  +
Sbjct: 183 FVLGIAGVFVLFGSINFDTIFANASNF---APHEGGGEASEVILNLFGMQLDKAHALTGV 239

Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPF 302
           CLL F+GAMGKSAQ LLH WLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSP 
Sbjct: 240 CLLLFMGAMGKSAQFLLHTWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPD 299

Query: 303 VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTH 362
            L  +TV+G ITAFFAATVGLVQ+DIKRVIAYSTCSQLGYMFVALG  AYGA+IFHLFTH
Sbjct: 300 ALVVVTVIGAITAFFAATVGLVQNDIKRVIAYSTCSQLGYMFVALGVGAYGAAIFHLFTH 359

Query: 363 AFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGF 422
           AFFKALLFL +GSVIH+V GEQDMR MGGLYPH+  T  +MI+GTLA+TG GIP T IGF
Sbjct: 360 AFFKALLFLCAGSVIHSVDGEQDMRYMGGLYPHIKVTGILMIIGTLAITGVGIPFTPIGF 419

Query: 423 SGFFSKDIILEVAYTSSH--FTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHK 480
           +GFFSKD+I+E  Y S      F F LL+ AA  TSFYSWRL+F+TFFGK R   ++ H 
Sbjct: 420 AGFFSKDVIIEATYASHSPVAGFAFSLLVIAALFTSFYSWRLIFMTFFGKPRASHEVMHH 479

Query: 481 IHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPL 540
           +HESP VM +PL++LAIG++F G IF   F+G  Y+ FWKGALF  + N ++E++H VP 
Sbjct: 480 VHESPQVMLVPLYLLAIGAVFAGVIFEGRFYGEEYAEFWKGALFTGAENELVEQFHHVPA 539

Query: 541 WVEYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPI 600
            V  S FIA  +GF  A+ MYI  P  P+ L+ + R  Y FL N WYFD +YD L VR  
Sbjct: 540 LVGLSPFIAMLLGFVLAWYMYIRSPQTPRTLARQHRVLYQFLLNKWYFDELYDFLFVRTA 599

Query: 601 VRLATILWKRVDLS-IDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIV 659
             L   LWK+ D+  ID YGP G+ A V  ++    RLQTGYL HYAF+MLIGI+ LV  
Sbjct: 600 KALGRFLWKKGDVGVIDTYGPNGVAARVVAVTDRVVRLQTGYLYHYAFAMLIGIAALVTW 659

Query: 660 MLL 662
           M+L
Sbjct: 660 MML 662