RPSBLAST alignment for GI: 254780865 and conserved domain: TIGR01972
>gnl|CDD|162632 TIGR01972, NDH_I_M, proton-translocating NADH-quinone oxidoreductase, chain M. This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. Length = 479
Score = 119 bits (300), Expect = 3e-27
Identities = 123/472 (26%), Positives = 193/472 (40%), Gaps = 53/472 (11%)
Query: 7 VIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREI 66
+++FLPLIGA+ GK L + L ++ G Q E
Sbjct: 3 LLIFLPLIGALLILLLPSKKGKARWIALVVALATLLLSLLLLFQFDPT-GSGFQFT--ES 59
Query: 67 FPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFT 126
PWI L I + L +D +S + V++ ++ ++ I + + + +L
Sbjct: 60 IPWI--PALGISYHLGVDGIS-LPLVLLTALLTLLSILASWESIQKRVKEFYALFLLLEA 116
Query: 127 FAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILA 186
+ V + D LL F WE + + YLLIG W + I A+MK F+ G L ++LA
Sbjct: 117 GVIGVFAALDLLLFYVF-WEAMLIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLA 174
Query: 187 ISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLF 246
I + +L + D + S +++ F F
Sbjct: 175 ILGLYFLGGTFDLLELINL------------PLPFSVQTWLFLA---------------F 207
Query: 247 FLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLF-ELSPFVL 304
F+ K LH WLPDA E PT S ++ + + PLF + S +
Sbjct: 208 FIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLYFA 267
Query: 305 DCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC-----RAYGASIFHL 359
+ L I + A + L Q DIKR+IAYS+ S +G FV LG ++F +
Sbjct: 268 PVLAALAVIAIIYGALIALAQTDIKRLIAYSSISHMG--FVLLGIFSFNELGISGAVFQM 325
Query: 360 FTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETS 419
+H A LFL G V++ A +D+ + GGL +P ++ +A G+P
Sbjct: 326 ISHGLITAALFLLVG-VLYDRAHTRDIAKYGGLANKMPVLAAFFMLFAMA--SLGLP--- 379
Query: 420 IGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKM 471
G SGF + +IL A+ V FL LT+ Y L FFG++
Sbjct: 380 -GTSGFVGEFLILLGAFKV--NPVVAFLAALGIVLTAAYMLWLYKRVFFGEL 428