RPSBLAST alignment for GI: 254780865 and conserved domain: TIGR01974
>gnl|CDD|162634 TIGR01974, NDH_I_L, proton-translocating NADH-quinone oxidoreductase, chain L. This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. Length = 617
Score = 737 bits (1905), Expect = 0.0
Identities = 335/659 (50%), Positives = 427/659 (64%), Gaps = 42/659 (6%)
Query: 3 MIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVV 62
+ +IVFLPLIG + +G FGR +GK+ + I + + A LS +VF + +
Sbjct: 1 NLIFLIVFLPLIGFLIAGLFGRRIGKRASGIIGIGSVGVSAALSAFVFVDFLLNGQGEAF 60
Query: 63 KREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYL 122
+ +FPWI G + +GLR+D LS M +VV +S +VHIYSIGYM D RFF+YL
Sbjct: 61 TQSLFPWISVGGFQVDFGLRLDQLSLTMLIVVTGVSLLVHIYSIGYMAHDEGYSRFFAYL 120
Query: 123 SFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLG 182
S FTF+ML+LV +DN LQ+FFGWEGVGL SYLLIGFW K SA A++KAFVVNR+GD G
Sbjct: 121 SLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFG 180
Query: 183 LILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242
L+L I I + F +++F VF A + F + +I
Sbjct: 181 LLLGIFLIFWYFGTLNFQEVFALAP------------------GADFSA-------LTLI 215
Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPF 302
CLL F+GAMGKSAQL LH WLPDAMEGPTPVSALIHAATMVTAGV+LVAR SPLFELSP
Sbjct: 216 CLLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSPLFELSPT 275
Query: 303 VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTH 362
L +T++G ITA FAATV LVQ+DIKR++AYSTCSQLGYMF+ALG AY A+IFHL TH
Sbjct: 276 ALYLVTIIGAITALFAATVALVQNDIKRILAYSTCSQLGYMFLALGVGAYAAAIFHLMTH 335
Query: 363 AFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGF 422
AFFKALLFLG+GSVIHA+ EQD+R+MGGL +P T ++G+LAL GF GF
Sbjct: 336 AFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFP------GF 389
Query: 423 SGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIH 482
+GFFSKD+ILE A+ S +F+F L AFLT+FYS+RL+F+TF GK R + D H
Sbjct: 390 AGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMTFHGKKRHEAD--SHPH 447
Query: 483 ESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWV 542
ESPLVM +PL +LA+GS+F GF +F F KG L S+ V H VP
Sbjct: 448 ESPLVMLLPLIVLAVGSVFAGFFIVPLF------EFLKGVLPTSAEPIVE--AHHVPALE 499
Query: 543 EYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVR 602
+S +G A+L+Y P+LP ++++ Y L N WYFD YD L V+P +
Sbjct: 500 IWSPLAVAILGIALAYLLYKN-PTLPAKIAQRHSGLYRLLLNKWYFDEFYDKLFVKPYLF 558
Query: 603 LATILWKRVDLSIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVML 661
L +LWK VD I GI V +S+ +LQTGYL HYAFSM++G+ +L+ ++L
Sbjct: 559 LGKLLWKDVDDKIIDGFVNGIARVVGAISARLRKLQTGYLRHYAFSMVVGVVVLLALVL 617