RPSBLAST alignment for GI: 254780865 and conserved domain: TIGR01974

>gnl|CDD|162634 TIGR01974, NDH_I_L, proton-translocating NADH-quinone oxidoreductase, chain L. This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. Length = 617
 Score =  737 bits (1905), Expect = 0.0
 Identities = 335/659 (50%), Positives = 427/659 (64%), Gaps = 42/659 (6%)

Query: 3   MIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVV 62
            +  +IVFLPLIG + +G FGR +GK+ + I     + + A LS +VF +       +  
Sbjct: 1   NLIFLIVFLPLIGFLIAGLFGRRIGKRASGIIGIGSVGVSAALSAFVFVDFLLNGQGEAF 60

Query: 63  KREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYL 122
            + +FPWI   G  + +GLR+D LS  M +VV  +S +VHIYSIGYM  D    RFF+YL
Sbjct: 61  TQSLFPWISVGGFQVDFGLRLDQLSLTMLIVVTGVSLLVHIYSIGYMAHDEGYSRFFAYL 120

Query: 123 SFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLG 182
           S FTF+ML+LV +DN LQ+FFGWEGVGL SYLLIGFW  K SA  A++KAFVVNR+GD G
Sbjct: 121 SLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFG 180

Query: 183 LILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242
           L+L I  I + F +++F  VF  A                    + F         + +I
Sbjct: 181 LLLGIFLIFWYFGTLNFQEVFALAP------------------GADFSA-------LTLI 215

Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPF 302
           CLL F+GAMGKSAQL LH WLPDAMEGPTPVSALIHAATMVTAGV+LVAR SPLFELSP 
Sbjct: 216 CLLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSPLFELSPT 275

Query: 303 VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTH 362
            L  +T++G ITA FAATV LVQ+DIKR++AYSTCSQLGYMF+ALG  AY A+IFHL TH
Sbjct: 276 ALYLVTIIGAITALFAATVALVQNDIKRILAYSTCSQLGYMFLALGVGAYAAAIFHLMTH 335

Query: 363 AFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGF 422
           AFFKALLFLG+GSVIHA+  EQD+R+MGGL   +P T    ++G+LAL GF       GF
Sbjct: 336 AFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFP------GF 389

Query: 423 SGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIH 482
           +GFFSKD+ILE A+ S   +F+F   L  AFLT+FYS+RL+F+TF GK R + D     H
Sbjct: 390 AGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMTFHGKKRHEAD--SHPH 447

Query: 483 ESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWV 542
           ESPLVM +PL +LA+GS+F GF    +F       F KG L  S+   V    H VP   
Sbjct: 448 ESPLVMLLPLIVLAVGSVFAGFFIVPLF------EFLKGVLPTSAEPIVE--AHHVPALE 499

Query: 543 EYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVR 602
            +S      +G   A+L+Y   P+LP  ++++    Y  L N WYFD  YD L V+P + 
Sbjct: 500 IWSPLAVAILGIALAYLLYKN-PTLPAKIAQRHSGLYRLLLNKWYFDEFYDKLFVKPYLF 558

Query: 603 LATILWKRVDLSIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVML 661
           L  +LWK VD  I      GI   V  +S+   +LQTGYL HYAFSM++G+ +L+ ++L
Sbjct: 559 LGKLLWKDVDDKIIDGFVNGIARVVGAISARLRKLQTGYLRHYAFSMVVGVVVLLALVL 617