RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780865|ref|YP_003065278.1| NADH dehydrogenase subunit L
[Candidatus Liberibacter asiaticus str. psy62]
(666 letters)
>gnl|CDD|180633 PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L;
Reviewed.
Length = 624
Score = 800 bits (2068), Expect = 0.0
Identities = 330/663 (49%), Positives = 426/663 (64%), Gaps = 45/663 (6%)
Query: 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQ 60
M +++ +IV LPLIGA+ G FGR +G+++A + + L+ + A LS VF++ G +
Sbjct: 2 MNLLW-LIVLLPLIGALILGLFGRRIGEKWAHLVGTGLVGLSALLSLVVFFDFLLGGG-R 59
Query: 61 VVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFS 120
+ ++ WI D+ +GLR+D LS+ M VVV +S +VHIYSIGYM D RFF+
Sbjct: 60 AFSQTLWTWISVGDFDVDFGLRVDGLSATMLVVVTGVSFLVHIYSIGYMAHDEGYRRFFA 119
Query: 121 YLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGD 180
YL+ FTF+ML+LV SDNLLQ+FFGWEGVGL SYLLIGFW K SA A+MKAF+VNR+GD
Sbjct: 120 YLNLFTFSMLMLVLSDNLLQLFFGWEGVGLCSYLLIGFWYKKPSAGAAAMKAFIVNRVGD 179
Query: 181 LGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA 240
+GL L I + F S+++D VF A FFG+ ++
Sbjct: 180 VGLALGIFLLFAEFGSLNYDEVFAAAPQ-------------------FFGLG---WSALT 217
Query: 241 IICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELS 300
+ICLL F+GAMGKSAQ LH WLPDAMEGPTPVSALIHAATMVTAGV+LVARMSPLFELS
Sbjct: 218 LICLLLFIGAMGKSAQFPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARMSPLFELS 277
Query: 301 PFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLF 360
P L + ++G +TA FAA +GLVQ DIKRV+AYST SQLGYMF+ALG AY A+IFHL
Sbjct: 278 PEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLM 337
Query: 361 THAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSI 420
THAFFKALLFLG+GSVIHA+ EQD+R+MGGL +P T ++GTLAL G
Sbjct: 338 THAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPP----- 392
Query: 421 GFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHK 480
F+GFFSKD ILE A+ + H +F L AFLT+FYS+RL+FL F GK +K+ H
Sbjct: 393 -FAGFFSKDEILEAAFANGHI-NLFVAGLVGAFLTAFYSFRLIFLVFHGK---EKEKIHH 447
Query: 481 IHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPL 540
HESP VM +PL +LA+ S+F G + F G L ++ E H +P+
Sbjct: 448 PHESPAVMTLPLIVLAVLSVFAGALIVPPFL---------GVLPLTTELAHGEAEHHLPV 498
Query: 541 WVEYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPI 600
WV + G A+L+Y+ P+LP ++ RF Y L+N +YFD +Y+ + V+P
Sbjct: 499 WVALLPLVVALAGIALAWLLYLKKPTLPTSIAAPGRFLYTLLRNKYYFDELYEKVFVKPG 558
Query: 601 VRLATILWKRVDLS-IDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIV 659
+ LA +LWK D ID P V S RLQTGYL HYA SMLIG +L+ +
Sbjct: 559 LALARLLWKDGDDGIIDGLVP-NSARLVGGGSRVLRRLQTGYLRHYAASMLIGAVVLLAL 617
Query: 660 MLL 662
+LL
Sbjct: 618 LLL 620
>gnl|CDD|162634 TIGR01974, NDH_I_L, proton-translocating NADH-quinone
oxidoreductase, chain L. This model describes the 12th
(based on E. coli) structural gene, L, of bacterial NADH
dehydrogenase I, as well as chain 5 of the corresponding
mitochondrial complex I and subunit 5 (or F) of the
chloroplast NAD(P)H-plastoquinone dehydrogenase complex.
Length = 617
Score = 737 bits (1905), Expect = 0.0
Identities = 335/659 (50%), Positives = 427/659 (64%), Gaps = 42/659 (6%)
Query: 3 MIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVV 62
+ +IVFLPLIG + +G FGR +GK+ + I + + A LS +VF + +
Sbjct: 1 NLIFLIVFLPLIGFLIAGLFGRRIGKRASGIIGIGSVGVSAALSAFVFVDFLLNGQGEAF 60
Query: 63 KREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYL 122
+ +FPWI G + +GLR+D LS M +VV +S +VHIYSIGYM D RFF+YL
Sbjct: 61 TQSLFPWISVGGFQVDFGLRLDQLSLTMLIVVTGVSLLVHIYSIGYMAHDEGYSRFFAYL 120
Query: 123 SFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLG 182
S FTF+ML+LV +DN LQ+FFGWEGVGL SYLLIGFW K SA A++KAFVVNR+GD G
Sbjct: 121 SLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFG 180
Query: 183 LILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242
L+L I I + F +++F VF A + F + +I
Sbjct: 181 LLLGIFLIFWYFGTLNFQEVFALAP------------------GADFSA-------LTLI 215
Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPF 302
CLL F+GAMGKSAQL LH WLPDAMEGPTPVSALIHAATMVTAGV+LVAR SPLFELSP
Sbjct: 216 CLLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSPLFELSPT 275
Query: 303 VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTH 362
L +T++G ITA FAATV LVQ+DIKR++AYSTCSQLGYMF+ALG AY A+IFHL TH
Sbjct: 276 ALYLVTIIGAITALFAATVALVQNDIKRILAYSTCSQLGYMFLALGVGAYAAAIFHLMTH 335
Query: 363 AFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGF 422
AFFKALLFLG+GSVIHA+ EQD+R+MGGL +P T ++G+LAL GF GF
Sbjct: 336 AFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFP------GF 389
Query: 423 SGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIH 482
+GFFSKD+ILE A+ S +F+F L AFLT+FYS+RL+F+TF GK R + D H
Sbjct: 390 AGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMTFHGKKRHEAD--SHPH 447
Query: 483 ESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWV 542
ESPLVM +PL +LA+GS+F GF +F F KG L S+ V H VP
Sbjct: 448 ESPLVMLLPLIVLAVGSVFAGFFIVPLF------EFLKGVLPTSAEPIVE--AHHVPALE 499
Query: 543 EYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVR 602
+S +G A+L+Y P+LP ++++ Y L N WYFD YD L V+P +
Sbjct: 500 IWSPLAVAILGIALAYLLYKN-PTLPAKIAQRHSGLYRLLLNKWYFDEFYDKLFVKPYLF 558
Query: 603 LATILWKRVDLSIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVML 661
L +LWK VD I GI V +S+ +LQTGYL HYAFSM++G+ +L+ ++L
Sbjct: 559 LGKLLWKDVDDKIIDGFVNGIARVVGAISARLRKLQTGYLRHYAFSMVVGVVVLLALVL 617
>gnl|CDD|180952 PRK07376, PRK07376, NAD(P)H-quinone oxidoreductase subunit F;
Validated.
Length = 673
Score = 460 bits (1185), Expect = e-130
Identities = 278/714 (38%), Positives = 377/714 (52%), Gaps = 100/714 (14%)
Query: 1 MAMIYE---VIVFLPLIGAVFSGF----FGRLMGK--QFADIFTSLLMVIGAFLSWYVFY 51
M Y+ +I LPL+GAV G F + + Q + L+ A LS+ + +
Sbjct: 1 MESAYQYAWLIPVLPLLGAVLVGLGLISFNQTTNRLRQPVAVLLISLVGAAAVLSYALLW 60
Query: 52 EIGFGHDVQVVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHD 111
GH+ +F W +P G ID L +VM V+V +++ +V IYS GYM
Sbjct: 61 SQIQGHEPYE---RLFEWASAGDFHLPMGYVIDPLGAVMLVLVTTVALLVMIYSDGYMAH 117
Query: 112 DPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMK 171
DP RFF+YLS F+ +ML LV S NL+Q++ WE VG+ SYLL+GFW ++ A A+ K
Sbjct: 118 DPGYVRFFAYLSLFSSSMLGLVISPNLVQIYVFWELVGMCSYLLVGFWYDRKGAADAAQK 177
Query: 172 AFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGI 231
AFVVNR+GD GL+L I + + S DFD + S VSSG V
Sbjct: 178 AFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLS------ELVSSGAV---------- 221
Query: 232 DVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVA 291
++C+L FLG M KSAQ LHVWLPDAMEGPTP+SALIHAATMV AGVFLVA
Sbjct: 222 ---SGWLALLLCILVFLGPMAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLVA 278
Query: 292 RMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRA 351
RM P+FE P V+ I G ITAF A++ L Q+DIK+ +AYST SQLGYM +A+GC A
Sbjct: 279 RMYPVFEQFPAVMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGA 338
Query: 352 YGASIFHLFTHAFFKALLFLGSGSVIHAVAG--------EQDMRRMGGLYPHLPRTCWMM 403
Y A +FHL THA+FKA+LFLGSGSVIH + QDMR MGGL ++P T
Sbjct: 339 YSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEVVGHDPVLAQDMRLMGGLRKYMPITAITF 398
Query: 404 IVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLM 463
++G LA++ GIP F+GF+SKD IL A+ + ++F+ A +T+FY +R+
Sbjct: 399 LIGCLAIS--GIPP----FAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMY 450
Query: 464 FLTFFGKMR-VDKDI---------------------------SHKIHESPLVMQIPLFIL 495
FLTF G+ R DK++ S HESP M +PL +L
Sbjct: 451 FLTFEGEFRGNDKELQKELLAAADAPGHHEGHHEEHGEHHHHSGSPHESPWTMTLPLVVL 510
Query: 496 AIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVEY------SSFIA 549
A+ S+ G + G+ +++ ++ L A LE W E+ S IA
Sbjct: 511 AVPSVLIGLL------GTPWNNRFEAFLHA--PGEALEAAAHFE-WGEFLILAGASVGIA 561
Query: 550 FFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLATILWK 609
+G A LMY++ P ++E+ Y F N WY D IY+ L V+ RLA
Sbjct: 562 -LIGITLASLMYLLKKIDPAAIAERFPPLYQFSLNKWYLDDIYEKLFVKGSRRLA----- 615
Query: 610 RVDLSIDKYGPGGIVACVRYLSSYSSR----LQTGYLDHYAFSMLIGISILVIV 659
R L +D G+V ++ S + G YA + + LVIV
Sbjct: 616 RQVLEVDYKVVDGVVNLTGLVTLGSGEGLKYFENGRAQFYALIVFGAVLGLVIV 669
>gnl|CDD|183648 PRK12648, PRK12648, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 948
Score = 233 bits (596), Expect = 1e-61
Identities = 159/502 (31%), Positives = 240/502 (47%), Gaps = 47/502 (9%)
Query: 3 MIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVV 62
M ++V LP +GA+ + R + L+ + L ++ + G V
Sbjct: 1 MSLLLLVLLPFLGALLAALLPRN-ARNAEAWLAGLVALAALVLLALLYPAVAAGE----V 55
Query: 63 KREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYL 122
R W+ GL++ LR+D L+ + +++ I +V +Y+ Y+ PRFFS+L
Sbjct: 56 IRAEIEWLPALGLNL--SLRLDGLAWLFALLILGIGLLVVLYARYYLSPADPVPRFFSFL 113
Query: 123 SFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLG 182
F AML +V S NL+ + WE L+S+LLIG+W + A + + A V G L
Sbjct: 114 LLFMGAMLGIVLSGNLILLVVFWELTSLSSFLLIGYWHHRADARRGARMALTVTGAGGLA 173
Query: 183 LILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242
L+ + + ++ S D D V G+ + + HP A++
Sbjct: 174 LLAGVLLLGHIVGSYDLDVVLAA-------GDLIRA---------------HPLYPPALV 211
Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPF 302
+L LGA KSAQ H WLP AM PTPVSA +H+ATMV AGVFL+AR+ P+ +
Sbjct: 212 LIL--LGAFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLWPVLAGTEE 269
Query: 303 VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHL 359
+ G IT A L QHD+K ++AYST S LG + + LG A A+IFH+
Sbjct: 270 WFWIVGGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSPLAAVAAIFHI 329
Query: 360 FTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETS 419
HA FKA LF+ +G + H G +DMRR+ GL +P T + +V A+ G+P
Sbjct: 330 INHATFKASLFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMA--GVP--- 383
Query: 420 IGFSGFFSKDIIL-EVAYTSSHFTFVFFL---LLFAAFLTSFYSWRLMFLTFFGKMRVDK 475
+GF SK++ E T + + L A + YS R + FFG
Sbjct: 384 -LLNGFLSKEMFFAETLDTHLLGSLDWLLPVAATLAGAFSVAYSLRFIHDVFFGPPPD-- 440
Query: 476 DISHKIHESPLVMQIPLFILAI 497
D+ HE P M+ P+ +L +
Sbjct: 441 DLPKTPHEPPRWMRAPVELLVL 462
>gnl|CDD|183649 PRK12649, PRK12649, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 789
Score = 230 bits (587), Expect = 1e-60
Identities = 155/512 (30%), Positives = 244/512 (47%), Gaps = 49/512 (9%)
Query: 7 VIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREI 66
+ +FLP I A +++ KQ F + + L V E+ G +
Sbjct: 9 LAIFLPFILAWTVPVLEKVL-KQRIGWFAAAIAFTSFALIAQVAPEVIHGTIIT----GS 63
Query: 67 FPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFT 126
W+ G++ + D L+ ++ ++ + I ++ YS GYM PR++ YL F
Sbjct: 64 ISWLPSAGVEF--SIYADGLAVLIGLIASGIGVIIMSYSNGYMSHKEDLPRYYQYLLLFM 121
Query: 127 FAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILA 186
+M+ +V S N +Q+F WE + S++LIG+W + ++ + K+ ++ G L +
Sbjct: 122 GSMIGMVFSGNTIQLFIFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAG 181
Query: 187 ISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLF 246
+ + + D + Q++ ++ ++ H I +L
Sbjct: 182 FLLLHVITGTYDIATILQDSE------------LIE---------NIKGHPLFLITLILI 220
Query: 247 FLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDC 306
F+GA KSAQ ++WLP+AME PTPVSA +H+ATMV AGV+LVAR+ P+F +
Sbjct: 221 FIGAAAKSAQGPFYIWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTEAWFIL 280
Query: 307 ITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAY-------GASIFHL 359
++ G IT A + Q DIK ++AYST SQL Y+ G Y A+ FHL
Sbjct: 281 VSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYHEPGLGVAAATFHL 340
Query: 360 FTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETS 419
HA FKA LFL +G V H A +D+R++GGL +P T + + LA+ GIP
Sbjct: 341 LNHATFKACLFLVAGIVAHE-AATRDIRKLGGLRKEMPITFIVASIAALAMA--GIPP-- 395
Query: 420 IGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAF------LTSFYSWRLMFLTFFGKMRV 473
+GF SK++ E + F ++ A T YS +L+ F G+ R
Sbjct: 396 --LNGFLSKEMFYETSVEMGALIGGPFTIIIPAVAVLGGVFTFAYSIKLIDGIFLGE-RT 452
Query: 474 DKDISHKIHESPLVMQIPLFILAIGSIFFGFI 505
+ H IHE+P VM IP LA I FG +
Sbjct: 453 HDHLPHHIHEAPYVMLIPAAFLAGLVILFGLV 484
>gnl|CDD|162123 TIGR00940, 2a6301s01, Tmonovalent cation:proton antiporter. This
family of proteins constists of bacterial multicomponent
K+:H+ and Na+:H+ antiporters. The best characterized
systems are the PhaABCDEFG system of Rhizobium meliloti
which functions in pH adaptation and as a K+ efflux
system and the MnhABCDEFG system of Staphylococcus
aureus which functions as a Na+:H+ antiporter.
Length = 793
Score = 222 bits (568), Expect = 2e-58
Identities = 147/466 (31%), Positives = 228/466 (48%), Gaps = 59/466 (12%)
Query: 65 EIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSF 124
W+ GL+ + L +D L+ + +++ I +V +YSI Y+ + P F++YL
Sbjct: 57 YTIDWVPELGLN--FTLYMDGLALLFSLLITGIGVLVVLYSIYYLSKEEPLPNFYAYLLA 114
Query: 125 FTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLI 184
F AML +V SDNL+ ++ WE + S+LLI +W + + + K+ + G L ++
Sbjct: 115 FMGAMLGVVLSDNLILLYVFWELTSIVSFLLISYWHHRAHSRYGAQKSLTITVFGGLAML 174
Query: 185 LAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICL 244
+ + + S DAV +A I NS FG +
Sbjct: 175 GGLILLGKITGSFSIDAVIASAD---AIRNS-----------PLFGT----------AMV 210
Query: 245 LFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVL 304
L LGA KSAQ H+WLPDAME PTPVSA +H+ATMV AG++L+AR +P+F +
Sbjct: 211 LVLLGAFTKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTPVFAGTEAWF 270
Query: 305 DCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALG---------------- 348
+ + G IT + + + Q D+K ++A+ST SQLG + V LG
Sbjct: 271 WIVGLAGLITLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLLGLGSPSYHYQGDDSKIY 330
Query: 349 CRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTL 408
A A++FHL HA FK LF+ +G + H G +D+R++GGL+ +P T + ++ +
Sbjct: 331 ALAAVAAVFHLINHATFKGSLFMAAGIIDHE-TGTRDIRKLGGLFHIMPITFTLAMIASA 389
Query: 409 ALTGFGIPETSIGFSGFFSKDIILEVAYTSSH---FTFVFFLLLF------AAFLTSFYS 459
A+ G F+GF SK++ A T+ F V LF A+ T YS
Sbjct: 390 AMAGVPP------FNGFLSKEMFFAEAITAHLVNPFDTVTLGYLFPYVATVASVFTFVYS 443
Query: 460 WRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFI 505
R + FFG+ + +D+ K HE P M IL + + FG
Sbjct: 444 LRFIHGVFFGRPK-PEDLPRKPHEPPRWMLASPDILVLLVLVFGLF 488
>gnl|CDD|183644 PRK12644, PRK12644, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 965
Score = 222 bits (568), Expect = 2e-58
Identities = 144/456 (31%), Positives = 219/456 (48%), Gaps = 57/456 (12%)
Query: 64 REIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHR-PRFFSYL 122
E+ PWI GLD+ R+D L+++M ++V + A+V +Y Y DD R RF + L
Sbjct: 55 TEVVPWIPSLGLDL--AFRLDALAALMSLLVLGVGALVLLYCARYFDDDEPRLGRFAAEL 112
Query: 123 SFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDL- 181
F AM LV+SDNLL ++ WE + S+LLIG ++ + ++ +A+++A +V G L
Sbjct: 113 VAFAGAMFGLVTSDNLLLLYVFWELTTVLSFLLIGHYAERAASRRAALQALLVTTAGGLA 172
Query: 182 ---GLI-LAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHD 237
G+I L +A Y + + + + VS
Sbjct: 173 MLVGIIILGQAAGTYRLSEL--------------LADPPTGPAVS--------------- 203
Query: 238 SIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLF 297
+A++ +L +GA+ KSA + H WLP AM PTPVSA +HAA MV AG++LVAR++P F
Sbjct: 204 -VAVVLIL--VGALSKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGF 260
Query: 298 ELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYM--FVALGCRAYG-A 354
P + VLG T L QHD+K ++AY T SQLG++ V +G R A
Sbjct: 261 ADVPVWRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALA 320
Query: 355 SIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGF- 413
+ L HA FKA LFL G + H+ G +D+R++ GL P + +V LA
Sbjct: 321 GLAMLLAHALFKAALFLVVGIIDHS-TGTRDIRKLSGLGRRQP---VLAVVAALAAASMA 376
Query: 414 GIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAA----FLTSFYSWRLMFLTFFG 469
G+P GF +K+ LE ++L LT YS R ++ F
Sbjct: 377 GLPP----LLGFVAKEAALEAVLHDGALGPAGPVVLAGIVLGSILTVAYSLRFLWGAFAR 432
Query: 470 KMRVDKDI-SHKIHESPLVMQIPLFILAIGSIFFGF 504
K + ++H + P +LA+ + G
Sbjct: 433 KPGAFPSVAVTEMHRPSPLFLAPPAVLAVLGLVLGL 468
>gnl|CDD|183647 PRK12647, PRK12647, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 761
Score = 221 bits (566), Expect = 4e-58
Identities = 169/613 (27%), Positives = 269/613 (43%), Gaps = 98/613 (15%)
Query: 64 REIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLS 123
R + W+ L + +D LS +++ I ++ +Y+ GY+ P RF+SY+
Sbjct: 45 RGGYAWV--PSLGVNLSFLLDGLSLTFALLITGIGTLIVLYAGGYLKGHPDLGRFYSYIL 102
Query: 124 FFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGL 183
F +ML LV SDNL+ +F WE + S+LLIGF +E+A +A+++A +V G GL
Sbjct: 103 LFMASMLGLVLSDNLITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGG--GL 160
Query: 184 ILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIIC 243
L I+ N + + + ++SG V + H I
Sbjct: 161 ALLAGLIL-----------LGNVTGTYSLSELLASGDV-----------IREHPLYLAIL 198
Query: 244 LLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV 303
LL GA KSAQ H WLP+AME PTPVSA +H+ATMV AG++L+AR++P+ +P
Sbjct: 199 LLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTPLW 258
Query: 304 LDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLG--YMFVALGCR-AYGASIFHLF 360
+ + G +T A + + Q D+K ++AYST S LG M + LG A A++ L
Sbjct: 259 QTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLV 318
Query: 361 THAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSI 420
H+ +K LF+ +G + H G +D+ ++GGL +P T AL+ G+P
Sbjct: 319 AHSLYKGALFMVAGIIDHE-TGTRDITKLGGLRRAMPIT--AAAALLAALSMAGLPP--- 372
Query: 421 GFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLT--------FFGKMR 472
GF +K++I E +L AA L + LM F GK+
Sbjct: 373 -LFGFLAKELIYE---ALLEAPLWSLILTVAAVLGNA----LMVAVAFLVGIKPFLGKL- 423
Query: 473 VDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVL 532
+ HE+P++M + +LA+ + FG +F FF +A S A+ L
Sbjct: 424 --VETPKHPHEAPVLMWLGPAVLAVLGLLFG-LFPF-FFHAALLSPAASAVLGEPVEVKL 479
Query: 533 ERYHE--VPLWVEYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDR 590
+H +PL + S + +G L + ++ DR
Sbjct: 480 ALWHGFNLPLLL---SLLTLLLGIGLYLLRARLRAAMAALDRA----------AGIGPDR 526
Query: 591 IYDCLLVRPIVRLATILWKRVDLSIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSML 650
YD + +VR+A RV LQ G L +Y
Sbjct: 527 GYD-RFMDGLVRVAE-WQTRV-------------------------LQNGRLRNYLTVTF 559
Query: 651 IGISILVIVMLLQ 663
+ + L+ L++
Sbjct: 560 LTAAALLGYTLVR 572
>gnl|CDD|183645 PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A;
Reviewed.
Length = 800
Score = 220 bits (564), Expect = 7e-58
Identities = 154/468 (32%), Positives = 237/468 (50%), Gaps = 60/468 (12%)
Query: 64 REIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHR-PRFFSYL 122
+ PWI L I + L +D LS + +++ I ++V +YSI Y+ + F+ YL
Sbjct: 59 MKTLPWI--PSLGINFTLYVDGLSLLFALLITGIGSLVVLYSIYYLSKKKEQLGNFYVYL 116
Query: 123 SFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLG 182
F AML +V SDNL+ ++ WE ++S+LLI +W +E++ + K+ ++ G L
Sbjct: 117 LLFMGAMLGVVLSDNLIVLYLFWELTSISSFLLISYWYEREASRYGAQKSMLITVFGGLS 176
Query: 183 LILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242
++ + + S + NA I P A+I
Sbjct: 177 MLGGFILLYIMTGSFSIREMIANAD----------------------EIQNSPLFIPAMI 214
Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPF 302
L LGA KSAQ ++WLPDAME PTPVSA +H+ATMV AG++LVAR +P+F S
Sbjct: 215 --LILLGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTPIFAGSQV 272
Query: 303 VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC------------- 349
+T++G IT F+ + + Q D+K ++A+ST SQLG + LG
Sbjct: 273 WFWTVTLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLHYQGDDSK 332
Query: 350 ---RAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVG 406
A A+IFHL HA FK LF+ G V H G +D+R++GGL +P T + ++G
Sbjct: 333 IYAAAITAAIFHLINHATFKGSLFMIVGIVDHET-GTRDIRKLGGLMTIMPITFTIALIG 391
Query: 407 TLALTGFGIPETSIGFSGFFSKDIILEVAYTSSH---FTFVFFLLLF------AAFLTSF 457
L++ G+P F+GF SK++ E ++ F+ + +LF A+ T
Sbjct: 392 ALSMA--GLPP----FNGFLSKEMFFESMLNATEANLFSLDTWGVLFPVIAWVASVFTFV 445
Query: 458 YSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFI 505
YS +F TFFGK + ++ + K HE+P+ M I ILA + FG
Sbjct: 446 YSIIFIFKTFFGKYKPEQ-LPKKAHEAPIGMLISPIILASLVVVFGLF 492
>gnl|CDD|180955 PRK07390, PRK07390, NAD(P)H-quinone oxidoreductase subunit F;
Validated.
Length = 613
Score = 217 bits (555), Expect = 7e-57
Identities = 172/666 (25%), Positives = 296/666 (44%), Gaps = 78/666 (11%)
Query: 8 IVFLPLIGAVFS-----GFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVV 62
I LIGA+ S G R G + A L+ ++ S I + Q +
Sbjct: 12 IPLYGLIGALLSLPWSPGII-RRTGPRPAAYLNLLMTLLAFVHSLLALRAI-WNQPPQQL 69
Query: 63 KREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYL 122
FPW+ LD+ L I ++ ++ +S + IY++GY+ D RFF+ L
Sbjct: 70 ---SFPWLQVADLDLSLSLEISPVTLGALELITGLSLLAQIYALGYLEKDWGLARFFALL 126
Query: 123 SFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLG 182
FF AM L SD+L + E + L++YLL+GFW + + A+ AF+ R+GDL
Sbjct: 127 GFFEAAMSGLALSDSLFFSYVLLEILTLSTYLLVGFWYAQPLVVTAARDAFLTKRVGDLL 186
Query: 183 LILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242
L++ + A+ L +++F + W ++ + ++
Sbjct: 187 LLMGVVALSPLAGTLNFSDLAA-----WAATANLDPL------------------TATLL 223
Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPF 302
L G GK AQ LH+WL +AMEGP P S L ++ +V G +++ ++ P+ LSP
Sbjct: 224 GLALIAGPTGKCAQFPLHLWLDEAMEGPNPASILRNSV-VVATGAWVLIKLQPVLALSPV 282
Query: 303 VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTH 362
L + V+G +TA A+ V + Q DIKR ++YST + LG +F+A+G + ++ L TH
Sbjct: 283 ALTVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTH 342
Query: 363 AFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGF 422
A KALLF+ GS+I QD+ +GGL+ +P T +VG+ L +P
Sbjct: 343 AIAKALLFMSVGSII-LTTITQDLTELGGLWSRMPATTLAFLVGSAGLVAL-LP-----L 395
Query: 423 SGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIH 482
GF++ + + + S + +LL LT+F R+ L F GK + + +
Sbjct: 396 GGFWALLRLADGLWAVSPWLVG--VLLLVNALTAFNLTRVFRLVFLGK---PQQKTRRSP 450
Query: 483 ESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWV 542
E M +P+ ILA ++ + + L S + LW
Sbjct: 451 EVLWPMALPMVILAGFTLHLPLL------------LQQWGLLPSWEA--------LNLWA 490
Query: 543 EYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVR 602
+ +G +Y + + + + RF L +Y DR+Y +V +
Sbjct: 491 APLLVASGLLGVLLGAWIY-LNKAWSRPIQLPLRFLQDLLAYDFYTDRLYRLTIVFVVAL 549
Query: 603 LATIL-WKRVDLSIDKYGPGGIVACVRYLSSYSSRL----QTGYLDHYAFSMLIGISILV 657
++ + W D+Y G+V V + +S + +G Y ++L+G+++L
Sbjct: 550 ISRLTAW------FDRYVVDGLVNLVGLATLFSGQGLKYSVSGQSQFYVLTILLGVALLG 603
Query: 658 IVMLLQ 663
++L
Sbjct: 604 ALLLWS 609
>gnl|CDD|180606 PRK06525, PRK06525, hydrogenase 4 subunit D; Validated.
Length = 479
Score = 216 bits (553), Expect = 1e-56
Identities = 148/516 (28%), Positives = 240/516 (46%), Gaps = 73/516 (14%)
Query: 11 LPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWI 70
LP IGA+ F + +F +L + L++ FY+ G K + +
Sbjct: 10 LPFIGALVVFFLPGRRAAELGVLFAALTTLCMLSLAY-AFYQAG--------KVAVTLTL 60
Query: 71 IFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHD-------DPHRPRFFSYLS 123
+ G +GL ID +S ++ VV + +V +YS GYM R++++L
Sbjct: 61 VNLGDVALFGLVIDPVSVLIGFVVVLLGLLVTLYSTGYMSPGNREHPVHEGTGRYYAFLL 120
Query: 124 FFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGL 183
F AM LV S LL + +E GL S+ LI ++ A+++++KA ++ IG LGL
Sbjct: 121 LFIGAMAGLVYSSTLLGLLLFFEITGLCSWALISYYQ-SPKALRSALKALLITHIGSLGL 179
Query: 184 ILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIIC 243
LA + + + A+ + + + + +
Sbjct: 180 YLAAATLFLQTGTFALSAL-----------SGLHGSL----------------KYLVFLG 212
Query: 244 LLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVAR----MSPLFEL 299
+LF A GKSAQL + WLPDAME PTP SA +HAA+MV GV++ AR M P+ +
Sbjct: 213 ILF--AAWGKSAQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPIPHV 270
Query: 300 SPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYG------ 353
+V V+ +T + + L Q D+KR++AYST +QLGYMF L G
Sbjct: 271 IGYV---GAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSRLALE 327
Query: 354 ASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGF 413
SI ++F HAF K+L FL +G++ ++ G + + R+ G+ LP V LA+T
Sbjct: 328 GSIAYIFNHAFAKSLFFLVAGALSYS-CGTRLLPRLRGVLKKLPLVGVGFCVAALAIT-- 384
Query: 414 GIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTS--FYSWRLMFLTFFGKM 471
G+P F+GFFSK I + S ++ + + S ++W FL +FG++
Sbjct: 385 GVPP----FNGFFSKFPIFAAGFELSVEYWILLPAMVLLLIESVASFAW---FLRWFGRV 437
Query: 472 RVDK--DISHKIHESPLVMQIPLFILAIGSIFFGFI 505
+ + P M++ L +L + S+ I
Sbjct: 438 VFGEPSEAVADAAPLPGSMKLVLIVLIVMSLVSPVI 473
>gnl|CDD|131015 TIGR01960, ndhF3_CO2, NAD(P)H dehydrogenase, subunit NdhF3 family.
This family represents a subfamily of NAD(P)H
dehydrogenase subunit 5, or ndhF. It is restricted to
two paralogs in each completed cyanobacterial genome, in
which several subtypes of ndhF are found. Included in
this family is NdhF3, shown to play a role in
high-affinity CO2 uptake in Synechococcus sp. PCC7002.
In all cases, neighboring genes include a paralog of
ndhD but do include other NAD(P)H dehydrogenase
subunits. Instead, genes related to C02 uptake tend to
be found nearby.
Length = 606
Score = 208 bits (530), Expect = 6e-54
Identities = 162/659 (24%), Positives = 289/659 (43%), Gaps = 74/659 (11%)
Query: 8 IVFLPLIGAVFSGFFG----RLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVK 63
+ F LIGA+ S + R G + A F L+ + S I +V
Sbjct: 12 VPFYGLIGALLSLPWSPGITRQTGPRPAGYFNLLMTFVAFVHSLLALQAIWSQPPQYLV- 70
Query: 64 REIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLS 123
+ W+ GLD+ + L I ++S+ V++ ++ + I+++GYM D RFF+ L
Sbjct: 71 ---WHWLQAAGLDLTFALEISSVSTGALVLITGLNLLAQIFALGYMEKDWGLARFFALLG 127
Query: 124 FFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGL 183
F + LV SD+L + E + L++YLLIGFW + + + AF+ R+GDL L
Sbjct: 128 LFEAGLGGLVLSDSLFFSYVLLEILTLSTYLLIGFWFAQPLVVTGARDAFLTKRVGDLIL 187
Query: 184 ILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIIC 243
++ + A+ L S ++D + Q W +V+ ++
Sbjct: 188 LMGVVALSPLAGSWNYDDLAQ-----WAATANVNPTT------------------ATLLG 224
Query: 244 LLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV 303
L G GK AQ LH+WL +AMEGP P S L + +V G +++ ++ P+ LSP
Sbjct: 225 LALIAGPTGKCAQFPLHLWLDEAMEGPNPASIL-RNSVVVATGAWVLIKLQPVLTLSPVA 283
Query: 304 LDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHA 363
L + +G +TA + + + Q DIKR ++YS + +G +F+A+G ++ L THA
Sbjct: 284 LTALIAIGSVTAIGGSLIAIAQIDIKRALSYSVSAYMGLVFIAVGLGQGDLALLLLLTHA 343
Query: 364 FFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFS 423
KALLF+ GS+I QD+ +GGL+ P + +VG+ L
Sbjct: 344 IAKALLFMSIGSIIWNTVT-QDLTELGGLWSRRPISGLSFVVGSAGLIAV------PPLG 396
Query: 424 GFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHE 483
F++ + + + +S ++ +LL LT+F R+ L F G+ K ++ + E
Sbjct: 397 SFWAWLKLADGLWATS--PWLVGVLLVVNLLTAFNLTRVFRLVFGGEA---KPMTRRSPE 451
Query: 484 SPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVE 543
M +P+ +L + I ++ + V
Sbjct: 452 VFWPMALPMVVLIGLVLHLPLILQQWSLLPDWAQ--------------------INWAVV 491
Query: 544 YSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRL 603
++ +G +Y + ++PK + RF L +Y D++Y +V + +
Sbjct: 492 ALLIVSGLLGIGLGSFIY-LGRAIPKPIRLPLRFVQDLLAYDFYTDKLYRATVVAAVASI 550
Query: 604 ATILWKRVDLSIDKYGPGGIVACVRYLSSYS-SRLQ---TGYLDHYAFSMLIGISILVI 658
+ R+ D+ GIV V ++ + L+ +G Y ++L+G++IL
Sbjct: 551 S-----RISAWFDRTFVDGIVNLVGLVTLFGGEGLKYSVSGQSQFYLLTILLGVAILGA 604
>gnl|CDD|183646 PRK12646, PRK12646, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 800
Score = 204 bits (521), Expect = 6e-53
Identities = 147/488 (30%), Positives = 230/488 (47%), Gaps = 65/488 (13%)
Query: 46 SWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYS 105
S Y +I +Q + I PW+ LDI LR+D LS + ++++ I V Y+
Sbjct: 42 SIYFLIQIPSVAKLQYLSTSI-PWM--KTLDINLDLRLDGLSLMFSLIISLIGIAVFFYA 98
Query: 106 IGYM---HDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFK 162
Y+ D+ PRF+ YL+ F F+M+ +V SDN + M+ WE ++S+LLI +W
Sbjct: 99 TQYLSSRKDN--LPRFYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYWYNN 156
Query: 163 ESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVS 222
+ ++++F++ G GL L + I+ Y G + + ++
Sbjct: 157 GDSQFGAIQSFMITVFG--GLALLVGFIML----------------YIMTGTNNITEILG 198
Query: 223 HRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATM 282
I H I L LGA KSAQ H+WLP AM PTPVSA +H+ATM
Sbjct: 199 QAD----HIKNHGLFIPMIFMFL--LGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATM 252
Query: 283 VTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGY 342
V AG+FL+ R +PL LS + +T +G IT F + L Q D+K ++AYST SQLG
Sbjct: 253 VKAGIFLLFRFTPLLGLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGM 312
Query: 343 MFVALG-------------CRAYG----ASIFHLFTHAFFKALLFLGSGSVIHAVAGEQD 385
+ +G Y A++FHL HA FK LF+G G + H AG +D
Sbjct: 313 IMAMVGIGGGYAQHQQDAIASIYVFVLFAALFHLMNHAIFKCALFMGVGIIDHE-AGTRD 371
Query: 386 MRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIIL-------EVAYTS 438
+R + G+ P+ +M + L++ G +GF SK++ L +++ S
Sbjct: 372 IRILSGMRQLFPKMNLVMTIAALSMAGVPF------LNGFLSKEMFLDALTQTGQLSQFS 425
Query: 439 SHFTF-VFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAI 497
+ F+ + A+ T Y+ ++ F+GK IHE P + +P IL +
Sbjct: 426 LISMIIIVFIGVIASIFTFTYALYMVKEVFWGKYDSKVFTKKNIHE-PWLFSLPSLILMV 484
Query: 498 GSIFFGFI 505
F+
Sbjct: 485 LVPVIFFV 492
>gnl|CDD|183650 PRK12650, PRK12650, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 962
Score = 201 bits (512), Expect = 6e-52
Identities = 133/448 (29%), Positives = 209/448 (46%), Gaps = 47/448 (10%)
Query: 68 PWI---IFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSF 124
WI + +G+D+ LR D LS ++ I AVV IYS Y+ F+ ++
Sbjct: 59 TWIPDLLGNGVDVNLALRADALSLFFALLALVIGAVVFIYSARYLPRKKGNTSFYLLMTA 118
Query: 125 FTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLI 184
F AML+LV +D+++ +F WE V LAS+ LI S++ ++ G L L+
Sbjct: 119 FMAAMLLLVLADDVVVLFVAWELVSLASFFLIA--RSGSGGEAGSIRTLILTFFGGLTLL 176
Query: 185 LAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICL 244
A++ + + S W + ++ +
Sbjct: 177 AAVAIAATQTGTTSLSGIL--HSDVWA-EKPGLTT---------------------VVAV 212
Query: 245 LFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVL 304
L + A KSAQ H WLP+AM TPVSA +HAA +V AG++L+ R SP+F
Sbjct: 213 LIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAVWN 272
Query: 305 DCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFT 361
+ ++G ITA A + + D+K++ AYST SQLG++ +G A A++ H
Sbjct: 273 WLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLA 332
Query: 362 HAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIG 421
HA FK+ LF+ G V H AG +D+RR+G L+ +P T + + AL+ +P
Sbjct: 333 HALFKSSLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIA--ALSMAAVPPL--- 386
Query: 422 FSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSF----YSWRLMFLTFFGKMRVDKDI 477
GF SK+ +L + LLL A L + YS RL+ F R D+
Sbjct: 387 -FGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALGAVFTFAYSARLVLGAFVDGPR---DM 442
Query: 478 SHKIHESPLVMQIPLFILAIGSIFFGFI 505
SH + E+P+ + +P + S+ G +
Sbjct: 443 SH-VKEAPVSLWLPAALPGALSLPLGLV 469
>gnl|CDD|180602 PRK06521, PRK06521, hydrogenase 4 subunit B; Validated.
Length = 667
Score = 171 bits (436), Expect = 4e-43
Identities = 124/466 (26%), Positives = 210/466 (45%), Gaps = 85/466 (18%)
Query: 76 DIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHD----DPHRPRFFSYLSFFTFAMLV 131
+P+ LR+D LS+ +V++ + A +YS+GY + P FF L F +M++
Sbjct: 71 FLPFHLRLDALSAFFLLVISLLGAAASLYSLGYFREYEGKGPGAMGFFYNL--FLASMVL 128
Query: 132 LVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAII 191
++ +D+ WE + L+S+ L+ + +A ++ G L ++LA
Sbjct: 129 VLLADDAFSFLVAWETMSLSSWFLVIANHREAEIRRAGFLYLLMAHAGALAILLAFG--- 185
Query: 192 YLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSI--AIICLLFFLG 249
+ S S+ F + +++ LL G
Sbjct: 186 ----------LLARESG----------------SYDFAAMRAAHLSPFWASLVFLLALFG 219
Query: 250 AMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFEL--------S 300
K+ + LHVWLP A P+ VSAL+ + M+ ++ + R+ F+L
Sbjct: 220 FGAKAGLVPLHVWLPRAHPAAPSHVSALM-SGVMLKVAIYGILRVV--FDLLGAPGWWWG 276
Query: 301 PFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALG----CRAYG--- 353
VL LG I+A L +HD+KR++AYST +G +FV LG AYG
Sbjct: 277 VLVL----ALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLGLAMVFIAYGMPL 332
Query: 354 -------ASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVG 406
A+++HL HA FK+LLFLG+G+V+HA G +DM ++GGL +P T W ++G
Sbjct: 333 LAALALTAALYHLLNHALFKSLLFLGAGAVLHA-TGTRDMEKLGGLIRRMPWTAWAFLIG 391
Query: 407 TLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFF---------LLLFAAFLTSF 457
LA++ +P +GF S+ ++L+ +S +L A L +
Sbjct: 392 CLAIS--ALPP----LNGFVSEWLLLQSLLSSPGLPQWGLKLAVPIAAAMLALTAALAAM 445
Query: 458 YSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFG 503
+ +TF G+ R +K + + HE P M+ + +LA + G
Sbjct: 446 CFVKFYGITFLGRPRSEK--AEEAHEVPRWMRAAMLLLAALCVLLG 489
>gnl|CDD|181404 PRK08375, PRK08375, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 487
Score = 165 bits (421), Expect = 3e-41
Identities = 113/512 (22%), Positives = 208/512 (40%), Gaps = 57/512 (11%)
Query: 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQ 60
++ + ++V +PL+ A + L+ + L+ + ++ G
Sbjct: 2 ISHLLPLLVAVPLLAAALIVLLPKRRR--LRWALALLVAALTFALAISLLPQVLDG---G 56
Query: 61 VVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFS 120
V+ + W G+ I LR D+LS++ +V + ++ +Y+IGY + + RF++
Sbjct: 57 VIAYVVGGW--PPGIGIE--LRADSLSALFLLVTSILAIAALLYAIGY--GEHRQTRFYA 110
Query: 121 YLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGD 180
+L + + +L +F E + L+SY L+ A+ A+ K +V IG
Sbjct: 111 LFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYALVAM-GGDRRALAAARKYLIVGLIGS 169
Query: 181 LGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA 240
L++ + + + +++ + + + ++
Sbjct: 170 TFLLIGVGLLYGVTGTLNMADLAGALA---------------------------ENPTVV 202
Query: 241 IICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMS-----P 295
L K+A LH WLP A PV + + + V+ + R+
Sbjct: 203 TAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGG 262
Query: 296 LFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALG---CRAY 352
F + + + VL ++ + L Q D+KRV+AYST SQ+GY+ + L A
Sbjct: 263 DFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLAL 322
Query: 353 GASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTG 412
A + HL HA K LFL +G++ G + + + GL +P T V +L+L G
Sbjct: 323 AAGLLHLLHHALMKGALFLAAGAIEVT-YGTRRLSELSGLGRRMPLTAAAFAVASLSLIG 381
Query: 413 FGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMR 472
SGF SK ++ V + V +LL ++ L Y R+ + FFG
Sbjct: 382 VPP------TSGFVSKWYLV-VGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPP 434
Query: 473 VDKDISHKIHESPLVMQIPLFILAIGSIFFGF 504
+ + E+PL M P LA+ S+ G
Sbjct: 435 PGSEAPKQ--EAPLGMLAPSLALALLSLLLGI 464
>gnl|CDD|181405 PRK08376, PRK08376, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 521
Score = 162 bits (413), Expect = 2e-40
Identities = 139/524 (26%), Positives = 240/524 (45%), Gaps = 70/524 (13%)
Query: 8 IVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEI-GFGHDVQVVKRE- 65
++ +PL GA L G + +I+ L+ + ++ VFYE+ G V V+ E
Sbjct: 10 LIIIPLFGAFSMPIVSLL-GGKAREIWAVLISFLTLIVALLVFYEVWNNGTIVYVLGAES 68
Query: 66 IFPWIIFDGLDIPWG--LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLS 123
+ F P +D + M ++ +S + +YSI YM D ++++ +
Sbjct: 69 PTLTLPFGSGGFPIRIIWEVDLFGAFMALIATIVSFLAVLYSISYMKHDTGLDKYYTLIL 128
Query: 124 FFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGL 183
ML + + +L F E + +ASY L+ F + AI+A +K V + +
Sbjct: 129 LLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMV 188
Query: 184 ILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIIC 243
+L I A++Y Y +++ ++ + + +P +A I
Sbjct: 189 LLGI-ALLY--------------GQY----GTLNMAYLAVK------MSENP-TVVAKIA 222
Query: 244 LLFFLGAMG-KSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFELSP 301
L F+ + KS + +H+WLPDA P+ +SA++ AG++ +AR+ LF +
Sbjct: 223 LALFIAGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLVIKQ--AGLYALARV--LFSIYG 278
Query: 302 FVLDCITV------LGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC--RAYG 353
++ TV LGC+T F + +VQ D+KR++AY + SQ+GYM + LG A G
Sbjct: 279 PAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALG 338
Query: 354 AS-------------IFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTC 400
I+H+ HA +KALLFL +G+VI+ G +++ +GGL +P+T
Sbjct: 339 DPAMASYGEIALAGGIYHIVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKTT 397
Query: 401 WMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSW 460
++G A+ G+P F+GF SK +I E + + V ++ L SF
Sbjct: 398 IAFLIGAAAIV--GLPP----FNGFASKWLIYESSALFNPILGVIAMIGSVLTLASFV-- 449
Query: 461 RLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGF 504
++ FFG + + E P M +P+ ILAI I G
Sbjct: 450 KVFHTAFFG---PPSEKVMNVKEPPKPMLVPMLILAIAIIGMGL 490
>gnl|CDD|183667 PRK12667, PRK12667, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 520
Score = 162 bits (413), Expect = 2e-40
Identities = 123/518 (23%), Positives = 232/518 (44%), Gaps = 50/518 (9%)
Query: 2 AMIYEVIVFLPLIGAVFSGFFGRLMG--KQFADIFTSLLMVIGAFLSWYVFYEIGFGHDV 59
I + L ++ A L+ ++ I+ L+ +I LS +F ++ +
Sbjct: 3 MDIVGLTPILLVLFAFLLPLLSILLKGNRKIQKIYALLVSLITLILSILLFIQVYSSNKP 62
Query: 60 QVVKREIFPWIIFDGLDIPWG--LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPR 117
V F G P G +D L +++ ++ + ++ IYS Y+ +
Sbjct: 63 IVYL--------FGGWPAPIGIVYEVDLLGALLGLLTALVMFLILIYSYWYLEHESGPEW 114
Query: 118 FFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNR 177
+++ L ML ++ + + +F E + +++Y L+ ++ + A++A++K ++
Sbjct: 115 YYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRDRGDAVEAAIKYALIGA 174
Query: 178 IGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHD 237
+G LA++ + F +++ A + +
Sbjct: 175 VGTTLYFLALAFLYATFGTLNM-ADLSAKIRGLSFPLTGGLAG-----------NPPLA- 221
Query: 238 SIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARM--- 293
+ + L K+A H WLPDA P+PVSA++ + +V G + + R
Sbjct: 222 -LGVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAML-SGLVVNVGAYAIIRFLYT 279
Query: 294 --SPLFELSPF---VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALG 348
L F + + +LG ++A A + +VQ D+KR++AYST S +GY+F+ +G
Sbjct: 280 IFGISPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIG 339
Query: 349 CR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIV 405
A++FH+ HA K+LLFL SG IHA AG +D+ + GL +P + ++
Sbjct: 340 IGTQLGLAAALFHIINHAIAKSLLFLASGVFIHA-AGTRDIDELAGLGRKMPIASFAFLI 398
Query: 406 GTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFL 465
G L+L GIP +GFFSK ++ S + LL+ +A + +R +
Sbjct: 399 GALSLV--GIPP----LNGFFSKLLLFNALLESGFYLPALVLLIASAI-SLVGYFRAWYS 451
Query: 466 TFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFG 503
FFGK + +++ HK ESP M + + +LA+ + G
Sbjct: 452 LFFGKPKSGEEVEHK--ESPS-MSVVILVLALAVLILG 486
>gnl|CDD|181533 PRK08668, PRK08668, NADH dehydrogenase subunit M; Validated.
Length = 610
Score = 148 bits (376), Expect = 4e-36
Identities = 141/588 (23%), Positives = 242/588 (41%), Gaps = 96/588 (16%)
Query: 7 VIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREI 66
+++ PLIG+V + + + + ++ I +L ++ L + + G
Sbjct: 5 LLLLTPLIGSVLA-YLLKKINEKIGVIGNALPLLFLIKLYFTLKVGTGEKL--------- 54
Query: 67 FPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFT 126
+ F G + + LS ++ + V + + + F+ +S
Sbjct: 55 --TLFFGGFKL--TFTLTHLSWFFAMISLLVIFSVAFFMVSEKTKNDAYFNMFALMSL-A 109
Query: 127 FAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILA 186
+ V +++D LL ++ WE + +S++++ K+ + KAS+K FV++ IG ++ A
Sbjct: 110 GVLGVFLAND-LLTLYIFWEIMTFSSFMMVPMG--KKESRKASLKYFVLSAIGAYAMLYA 166
Query: 187 ISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLF 246
I I + DF +S G+++ S F A+I LF
Sbjct: 167 IFLIYAKTGTFDFA--------------DISQGLINDTSTGF-----------ALIVFLF 201
Query: 247 FLGA-MGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVL 304
L + K+ LHVW PDA E P SA++ + G + + + +
Sbjct: 202 LLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQ-LSKLGAYGFLLVLYVLPGTKLFS 260
Query: 305 DCITV------------LGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR-- 350
+ T LG I+ + ++Q DIK++IAYS+ + GY+ V LG
Sbjct: 261 EFGTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTS 320
Query: 351 -AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLA 409
+ +FH+F HA FK L FL +VI+ G + MGGL +P T M +V ++
Sbjct: 321 LGFAGGLFHVFNHALFKGLFFLIFAAVIYR-TGTTKISEMGGLIEKMPFTFAMYLVAIIS 379
Query: 410 LTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFG 469
L GIP SGF SK +I E A S F+ F + + Y +R + F G
Sbjct: 380 LA--GIPPM----SGFASKWLIFE-ALISKGMPITAFMAFFGSIGSFLYVFRPLAGVFLG 432
Query: 470 KMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGF-----------IFHDVFFGSAYSSF 518
++ D + E+PL M IP+ IL + ++ FG IF ++ G
Sbjct: 433 QLPSDHK---DVKEAPLPMLIPMAILVLLNVVFGVAPGLVLQEINKIFGELGIGPIDYEG 489
Query: 519 WKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLMYIICPS 566
W+ S N + FI F VGF A ++Y +
Sbjct: 490 WEIKTGFGSWNALT-------------VFILFVVGFIIAAIIYFLGAK 524
>gnl|CDD|181264 PRK08168, PRK08168, NADH dehydrogenase subunit L; Provisional.
Length = 516
Score = 146 bits (370), Expect = 2e-35
Identities = 90/304 (29%), Positives = 148/304 (48%), Gaps = 28/304 (9%)
Query: 75 LDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVS 134
W L + L VM +V + V+ +S Y+ +P + R+ L+ A+ +LV
Sbjct: 60 PAAAW-LEVSGLGLVMAALVQLLGWVIGRFSHRYLQGEPGQRRYVRALAGVLAAVHLLVL 118
Query: 135 SDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLF 194
SD+LL + W + LA + L+ F+ + A A+ K F+ +R+ +L L+ A A+ YL
Sbjct: 119 SDHLLVLIAAWAAISLALHRLLCFYPDRPFARLAAHKKFIADRLAELLLLAAA-ALAYLE 177
Query: 195 H-SVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGK 253
S+ A++ + + P A + L+ L + K
Sbjct: 178 VGSLSLSALWAHLAAQ----------------------GASPSLQAAALLLV--LAVILK 213
Query: 254 SAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCI 313
+AQL +H WL ME PTPVSAL+HA +V G F++ R +PL E +P + ++G
Sbjct: 214 TAQLPVHGWLIQVMEAPTPVSALLHAG-VVNLGGFVLIRFAPLLEQAPPARWLLVLVGLA 272
Query: 314 TAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGS 373
TA A V L + IK +A+ST +Q+G+M + G Y ++ HL H+ +KA FL +
Sbjct: 273 TAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLSA 332
Query: 374 GSVI 377
+
Sbjct: 333 SEAV 336
>gnl|CDD|183668 PRK12668, PRK12668, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 581
Score = 137 bits (348), Expect = 7e-33
Identities = 121/512 (23%), Positives = 207/512 (40%), Gaps = 93/512 (18%)
Query: 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQ 60
+ + +VF+ GA+ F K + V+ V G V
Sbjct: 3 LDFLPPALVFI--AGALLVPFLPGRARKALLLLAP----VLAVLAVLTV--PEGTYLTVT 54
Query: 61 VVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFS 120
F G D+ G R+D LS V ++ ++ + IY++ H
Sbjct: 55 -----------FLGFDLVLG-RVDKLSRVFGLIFGIMAFIGVIYAL-------HVKDPGQ 95
Query: 121 YLSFFTFAMLVL--VSSDNLLQMFFGWEGVGLASYLLIGFWSFK-ESAIKASMKAFVVNR 177
+++ + L V + +LL +F WE + S L+ W+ ++A++A + +V+
Sbjct: 96 HVAALLYVGSALGAVFAGDLLTLFVFWELMAFTSTFLV--WARGTKAAVRAGFRYLLVHV 153
Query: 178 IGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHD 237
+G + L+ I S F A+
Sbjct: 154 LGGVLLLAGILLHYAETGSFAFGAIAGLGGTAA--------------------------- 186
Query: 238 SIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLF 297
L +G +A LH WLPDA T ++ +A V+ +AR P
Sbjct: 187 ------WLILIGFGVNAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALARAFPGT 240
Query: 298 ELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC---RAYGA 354
EL + +G A + L+++D++R+++Y SQ+GYM +G A
Sbjct: 241 EL-------LIYIGAAMAVYGVFFALLENDLRRLLSYHIVSQVGYMVAGIGIGTALAING 293
Query: 355 SIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFG 414
++ H F H +K LLF+ +G+V++ G + + +GGLY +P T +VG L+++ F
Sbjct: 294 AVAHAFNHILYKGLLFMSAGAVLYRT-GTEKLTELGGLYRSMPLTALFCLVGALSISAF- 351
Query: 415 IPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAA---FLTSFYSWRLMFLTFFGKM 471
P FSGF SK +I+ A H+ +V+ LLL A+ FL +L + FFG
Sbjct: 352 -P----LFSGFVSKSMIISAAG-EDHYVWVWLLLLLASAGTFLHF--GIKLPYFAFFGG- 402
Query: 472 RVDKDISHKIHESPLVMQIPLFILAIGSIFFG 503
D + K ++P M + + I A I G
Sbjct: 403 --DSGLRVK--DAPRNMLVAMGIAAFLCIAIG 430
>gnl|CDD|180632 PRK06589, PRK06589, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 489
Score = 128 bits (323), Expect = 4e-30
Identities = 114/459 (24%), Positives = 200/459 (43%), Gaps = 70/459 (15%)
Query: 69 WIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDD--PHRPRFFSYLSFFT 126
+ + D + GL ++ L + +++ + +Y+ Y+ + RF L FF
Sbjct: 67 FELMDFGNYSIGLHLEPLGLIFLLLIGFLWICALLYTPKYLAINNIDSSSRF---LFFFN 123
Query: 127 FAMLVLVS---SDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGL 183
+L+ V S +L MF +E + +++ LIG S K + I L L
Sbjct: 124 LTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLS-GGYKYLKILMISALLL 182
Query: 184 ILAISAIIYL-FHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242
L +IY ++DF VS G+ S +II
Sbjct: 183 FLPAVILIYTKTGNLDF----------------VSGGLFSKNQ--------------SII 212
Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPF 302
LL F+ + K+A +H WLP AM PVSAL+HA +V G+F + ++ L F
Sbjct: 213 LLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKIL----LYIF 268
Query: 303 VLDCITVL----------GCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVA---LGC 349
L + + ++ F+++ L +IK+++AYST SQL ++ L
Sbjct: 269 GLSYLQRIFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTP 328
Query: 350 RAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLA 409
+A GA+I HL +H+F K LF GS I+++ E + ++ G P +++ + +L+
Sbjct: 329 KALGAAILHLVSHSFAKICLFYSMGS-IYSLKKEDQVDKLHGTSKSFPLISFIISISSLS 387
Query: 410 LTGFGIPETSIGFSGFFSKDIILEVAYTSSHFT---FVFFLLLFAAFLTSFYSWRLMFLT 466
L G I FSGF SK +IL A + V +++ ++ L++ Y +++
Sbjct: 388 LIGIPI------FSGFISKFLILLAASEQNQPWLSIIVMLVVIASSILSALYLLKILSSI 441
Query: 467 FFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFI 505
+ + + I+ + P +MQI + F FI
Sbjct: 442 YKPSLSENSFITKSL---PYLMQISVITCCCALTLFYFI 477
>gnl|CDD|181532 PRK08667, PRK08667, hydrogenase membrane subunit; Validated.
Length = 644
Score = 120 bits (304), Expect = 8e-28
Identities = 128/532 (24%), Positives = 222/532 (41%), Gaps = 81/532 (15%)
Query: 17 VFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFP-WIIFDGL 75
+ + + + ++ S+L ++ A + + P W I GL
Sbjct: 14 LAAAVIPLVFRHKRKRVWQSVLWLVIAIALLLFAGSLQ----LFTGNPLDIPLWGIAPGL 69
Query: 76 DIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGY---MHDDPHRPRFFSYLSFFTFAMLVL 132
DI + ID L++ +++ +S V IYS+GY M + + + F +ML +
Sbjct: 70 DITFH--IDRLAAFFIILIGLVSLCVAIYSLGYNEHMSSNERANLLSALTALFILSMLGV 127
Query: 133 VSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIY 192
V+S N F WE + L+S+ L+ +E +A + FV+ ++ + L+L I +
Sbjct: 128 VASANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFI 187
Query: 193 LFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMG 252
S + ++++ LL FLG
Sbjct: 188 QTGSFEL------------------------------SPLGASAGILSLVFLLLFLGFGI 217
Query: 253 KSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTAGV----FLVARMSPLFELSPFVLDCI 307
K+ + H WLP A P+ VSAL+ + A FL+ +SP EL VL I
Sbjct: 218 KAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSP--ELWWGVL--I 273
Query: 308 TVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR--------------AYG 353
+ G I+A L +HD+K ++AYS+ +G + + +G A G
Sbjct: 274 LLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLALLALG 333
Query: 354 ASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGF 413
++FH HA FK+LLFL +GSV+HA G +++ +MGGL +P T + +VG +++
Sbjct: 334 GALFHSLNHALFKSLLFLTAGSVVHAT-GTRNIEKMGGLVKLMPYTSALFLVGAVSIA-- 390
Query: 414 GIPETSIGFSGFFSKDIILE-----VAYTSSHFTFVFFLLLFAAFLTSFYSW----RLMF 464
+P F+GF S+ ++ E + + F +L LTS + +
Sbjct: 391 ALPP----FNGFASELLLYESFFQSFSVADPLIKILLFSVLAIFALTSALAAACFVKAFG 446
Query: 465 LTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYS 516
+TF R + + E M I +LA+ + G +F + YS
Sbjct: 447 ITFLAMPRSQE--ARSAKEVSKPMLIGPAVLAVACLVLGLFSVQIFSLAGYS 496
>gnl|CDD|180571 PRK06458, PRK06458, hydrogenase 4 subunit F; Validated.
Length = 490
Score = 120 bits (302), Expect = 2e-27
Identities = 108/464 (23%), Positives = 187/464 (40%), Gaps = 74/464 (15%)
Query: 70 IIFDGLDIPWG--LRIDTLSSVMFVVVNSISAVVHIYSIGYM-HD------DPHRPRF-F 119
+ G G ID L+ ++ + + +YSIGYM H+ P R +
Sbjct: 52 VPDAGEIFAAGLWFFIDDLNVFFLALIGVVGFLTSLYSIGYMRHEVEHGELSPVTLRLYY 111
Query: 120 SYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIG 179
F F ML+ ++S+NL M+ E L+S LL+G + ++++A+ K + I
Sbjct: 112 GMYQLFLFTMLLALTSNNLGLMWVAIEATTLSSALLVGIYR-TRASLEAAWKYII---IC 167
Query: 180 DLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHD-- 237
+G+ A+ I + Y + G + + + H
Sbjct: 168 SVGVAFALFGTILV---------------YANAATVMGDG---EMAILWTELLKHASLLD 209
Query: 238 ----SIAIICLLFFLGAMGKSAQLLLHVWLPDA-MEGPTPVSA-----LIHAATMVTAGV 287
+A + LL +G K +H WLPDA E P+PVSA L++ A
Sbjct: 210 PTLMKLAFVFLL--IGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRY 267
Query: 288 FLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL 347
+++ + + +L + G ++ AA L Q DIKR+ AYS+ +G + AL
Sbjct: 268 YILIDAAIGSDFPGRLL---LIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFAL 324
Query: 348 GCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMI 404
G A++ H+ H+ K+ +F SG+V+ G +D+ + GL P T W ++
Sbjct: 325 GIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQ-KYGTRDINVIRGLLKVSPLTGWGLM 383
Query: 405 VGTLALTG---FGIPETSIGFSGFFSKDIILEVAYTSSHF--TFVFFLLLFAAFLTSFYS 459
+G LA+ G FG+ F S+ +IL + LLL AF
Sbjct: 384 LGALAIAGMPPFGV---------FISEFLILTAGLARGPLLIAILLLLLLTLAFAALVR- 433
Query: 460 WRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFG 503
+ FG + + + + P+F+ + + G
Sbjct: 434 --RVAGMVFG----EPPEAVNRGDLGWLTTSPMFVHLVLVLVLG 471
>gnl|CDD|162632 TIGR01972, NDH_I_M, proton-translocating NADH-quinone
oxidoreductase, chain M. This model describes the 13th
(based on E. coli) structural gene, M, of bacterial NADH
dehydrogenase I, as well as chain 4 of the corresponding
mitochondrial complex I and of the chloroplast NAD(P)H
dehydrogenase complex.
Length = 479
Score = 119 bits (300), Expect = 3e-27
Identities = 123/472 (26%), Positives = 193/472 (40%), Gaps = 53/472 (11%)
Query: 7 VIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREI 66
+++FLPLIGA+ GK L + L ++ G Q E
Sbjct: 3 LLIFLPLIGALLILLLPSKKGKARWIALVVALATLLLSLLLLFQFDPT-GSGFQFT--ES 59
Query: 67 FPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFT 126
PWI L I + L +D +S + V++ ++ ++ I + + + +L
Sbjct: 60 IPWI--PALGISYHLGVDGIS-LPLVLLTALLTLLSILASWESIQKRVKEFYALFLLLEA 116
Query: 127 FAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILA 186
+ V + D LL F WE + + YLLIG W + I A+MK F+ G L ++LA
Sbjct: 117 GVIGVFAALDLLLFYVF-WEAMLIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLA 174
Query: 187 ISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLF 246
I + +L + D + S +++ F F
Sbjct: 175 ILGLYFLGGTFDLLELINL------------PLPFSVQTWLFLA---------------F 207
Query: 247 FLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLF-ELSPFVL 304
F+ K LH WLPDA E PT S ++ + + PLF + S +
Sbjct: 208 FIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLYFA 267
Query: 305 DCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC-----RAYGASIFHL 359
+ L I + A + L Q DIKR+IAYS+ S +G FV LG ++F +
Sbjct: 268 PVLAALAVIAIIYGALIALAQTDIKRLIAYSSISHMG--FVLLGIFSFNELGISGAVFQM 325
Query: 360 FTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETS 419
+H A LFL G V++ A +D+ + GGL +P ++ +A G+P
Sbjct: 326 ISHGLITAALFLLVG-VLYDRAHTRDIAKYGGLANKMPVLAAFFMLFAMA--SLGLP--- 379
Query: 420 IGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKM 471
G SGF + +IL A+ V FL LT+ Y L FFG++
Sbjct: 380 -GTSGFVGEFLILLGAFKV--NPVVAFLAALGIVLTAAYMLWLYKRVFFGEL 428
>gnl|CDD|180252 PRK05777, PRK05777, NADH:ubiquinone oxidoreductase subunit N;
Provisional.
Length = 476
Score = 118 bits (298), Expect = 5e-27
Identities = 109/523 (20%), Positives = 208/523 (39%), Gaps = 77/523 (14%)
Query: 1 MAMIYEVIVFLPLI----GAVFSGFFGRLMGKQFADIFTSLLMVIGAFLS-WYVFYEIGF 55
+I+ LP + AV + + ++L ++ A ++ +V G
Sbjct: 2 TITSLNLILLLPELILLGAAVVLLLIDAFVRRHSRRATLAVLALLLALVALLFVLGAAG- 60
Query: 56 GHDVQVVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHR 115
F G+ L +D + + ++ S + + + Y+ +D R
Sbjct: 61 ------------GGTAFGGM-----LVVDGFALFLKGLILLASLLALLLARPYL-EDRGR 102
Query: 116 PRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVV 175
F+ + F M+V+VS+++LL +F G E + L Y L + +++A++K FV+
Sbjct: 103 GEFYLLVLFALLGMMVMVSANDLLTLFLGLELLSLPLYALAALRRDRRRSLEAAIKYFVL 162
Query: 176 NRIGDLGLILAISAIIYLF-HSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVH 234
+ G +L +++Y S+ F + + + + FG+
Sbjct: 163 GALAS-GFLLYGMSLLYGATGSLSFAGIAK-----------ALADGSGNSLLLLFGL--- 207
Query: 235 PHDSIAIIC-LLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVAR 292
+ ++ L F L A+ H+W PD EG PTPV+A + A + A ++ R
Sbjct: 208 ----VFLLVGLAFKLSAVP------FHMWTPDVYEGAPTPVTAFLATAPKI-AAFAVLLR 256
Query: 293 --MSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL--- 347
+ LS + ++ + L Q +IKR++AYS+ + GY+ V L
Sbjct: 257 LLVVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAG 316
Query: 348 GCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQ----DMRRMGGLYPHLPRTCWMM 403
Y A +F+L + F LG+ VI + + + GL P +M
Sbjct: 317 TAEGYSAVLFYLLAYLFMT----LGAFGVISLLRRKGGEAESISDFAGLSKRSPLLAAVM 372
Query: 404 IVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLM 463
+ L+L GIP +GF+ K + E A + + +L +A +FY R++
Sbjct: 373 TIFMLSLA--GIP----PTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAI-GAFYYLRVI 425
Query: 464 FLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIF 506
L +F + D ++ + V L + A+ + G
Sbjct: 426 KLMYFDEPPRDAPVNWPLSAGGAV----LSVSALLVLVLGIFP 464
>gnl|CDD|181406 PRK08377, PRK08377, NADH dehydrogenase subunit N; Validated.
Length = 494
Score = 113 bits (285), Expect = 1e-25
Identities = 129/516 (25%), Positives = 237/516 (45%), Gaps = 69/516 (13%)
Query: 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQ 60
M+ +++ LPLI A F +GK + L+ ++ ++ +VF E V
Sbjct: 1 MSQYASLLIALPLISAFFVPVIKG-IGKSAVRYYLILITLLQTGIAGWVFME------VY 53
Query: 61 VVKREIFPWIIFDGLDIPWG--LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRF 118
+ I I+ G P G L I +++ +++ +S ++ I+S+ + +P
Sbjct: 54 TTGKPII--IMAGGWKPPVGINLYIGPFAALFVLIIAIVSFIMSIFSLKAVEVEP----I 107
Query: 119 FSYLSFFTFAMLV---LVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVV 175
Y F ML ++++ ++ +F E + +Y L + E+A +ASMK V+
Sbjct: 108 DKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVL 166
Query: 176 NRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHP 235
IG ++ + A+IY ++G ++ + + P
Sbjct: 167 GGIGSSFFLIGV-ALIY-----------------------GATGTLNMAHIAQLAGTIDP 202
Query: 236 HDSIAIICLLFFLGAMGKSAQLL-LHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVAR- 292
+ + LL F + A+L L+ W PDA + P P++ + +A +V AG++ +AR
Sbjct: 203 TVAQVGLALLIF--GLAVEAELFPLNAWAPDAYQAAPHPITVMF-SAFVVKAGLYAMARI 259
Query: 293 MSPLFELSPF--VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC- 349
+ + + + VL + ++ +T FFA L Q ++KR+IAYS+ Q+G + +AL
Sbjct: 260 LYLMQNANGWSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALG 319
Query: 350 --RAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGT 407
A +FH+ HA KALLFL G V + G + + + GL +P T + +G
Sbjct: 320 TQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTE-IEKFEGLGKRMPLTALALTIGA 378
Query: 408 LALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTF 467
L+ GIP F+ F+SK I+ +A S+ +T+ L+L A+ + + Y +RL+ +
Sbjct: 379 LSTV--GIPL----FNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEAVYYFRLIHTMW 431
Query: 468 FGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFG 503
F K +I E+ + I L +LA + G
Sbjct: 432 F------KGEGERIREN-AAIGIILLLLAALIVVIG 460
>gnl|CDD|181498 PRK08601, PRK08601, NADH dehydrogenase subunit 5; Validated.
Length = 509
Score = 111 bits (279), Expect = 6e-25
Identities = 96/339 (28%), Positives = 149/339 (43%), Gaps = 46/339 (13%)
Query: 78 PWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDN 137
PW +DTL+ +M V ++ ++ +S+ Y+ D ++F+ +F T + S +
Sbjct: 67 PW--HLDTLAWLMAFFVLTLGFIIQRFSVRYLLGDRSYRKYFALFTFTTGFASLAWLSGD 124
Query: 138 LLQMFFGWEGVGLASYLLIG---FWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLF 194
L M W L LLIG W A K S F+ + + AI++LF
Sbjct: 125 LRLMALCWGATLLGLTLLIGLNKGWKVAREAAKISGMLFL------ISWLALALAIVWLF 178
Query: 195 HSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKS 254
A+ W++ + +S+ ++ + I LL L M +
Sbjct: 179 I----------ATGEWQLTSVLSNENLAQ-------LGTWEK---TGINLLLILAVMIPA 218
Query: 255 AQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCIT 314
AQ WL ++ PTPVSA++HA +V AG ++ R SPLF + + I+
Sbjct: 219 AQWPFQRWLIESAVAPTPVSAIMHAG-LVNAGGIMLTRFSPLFH-DDIAQILLLIFASIS 276
Query: 315 AFFAATVGLVQHDIKRVIAYSTCSQLGYMFV--ALGCRAYGASIFHLFTHAFFKALLFLG 372
+ LVQ D KR + ST +Q+G+M V ALG AY A+I HL H FKA LFL
Sbjct: 277 VLIGTGISLVQVDYKRQLVGSTMAQMGFMLVQCALG--AYSAAIIHLILHGLFKATLFLQ 334
Query: 373 SGSVIHAVAG-EQDMRRMGGLYPHLPRTCWMMIVGTLAL 410
SGS + +Q + L W+++ L L
Sbjct: 335 SGSAVPRFNIVKQANEKKSYL--------WIVVGRVLGL 365
>gnl|CDD|180900 PRK07234, PRK07234, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 470
Score = 103 bits (259), Expect = 2e-22
Identities = 83/394 (21%), Positives = 158/394 (40%), Gaps = 77/394 (19%)
Query: 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVS------ 134
LR D LS + ++ V Y + + RFF + +++ S
Sbjct: 63 LRADALSGYFILTNALVTLAVIFYCW-----ESAKTRFF-----YAQLLILHGSVNAAFV 112
Query: 135 SDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLF 194
+L+ ++ E + +A++LL+ + + AI ++ L S + LF
Sbjct: 113 CADLISLYVALEVLSIATFLLVAY-PRTDRAIWVGLR------------YLFYSNVAMLF 159
Query: 195 HSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKS 254
+ + V+Q ++ +F+F G+ ++ A+I LG + K
Sbjct: 160 YLIGAVLVYQ-----------------ANGTFAFSGLATADPEAFALI----ALGLLVKG 198
Query: 255 AQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCIT 314
+ +WLP P + + + +V AGVF + R + P + + + G T
Sbjct: 199 GIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCA---LDVPGLDLIVRIFGVGT 255
Query: 315 AFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSG 374
A L++ D+KR++A+ST SQLG++ A ++ L H K+ LFL +G
Sbjct: 256 ALLGVLFALLEKDLKRMLAFSTISQLGFILAA----PLVGGLYAL-AHGLVKSTLFLCAG 310
Query: 375 SVIHAVAGEQDMRRMGGLYPHLPRTCWMMIV-GTLALTGFGIPETSIGFSGFFSKDIILE 433
+ + + + +M L W+ + + ++ GF +GF SK + L
Sbjct: 311 -ALPSRNFTELISQM------LGIGKWIPLTMASFSIAGFP------LLAGFVSKVLTL- 356
Query: 434 VAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTF 467
+ + L AA T+ W+ +FL F
Sbjct: 357 ----KNLLPWQAIALNLAAVGTAASFWKFIFLPF 386
>gnl|CDD|180285 PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M;
Reviewed.
Length = 497
Score = 102 bits (257), Expect = 3e-22
Identities = 123/508 (24%), Positives = 208/508 (40%), Gaps = 56/508 (11%)
Query: 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFG-HDV 59
+ +++FLPLIG + G + A + ++ LS ++
Sbjct: 2 NWPLLSLLIFLPLIGGLL-VLLTERFGARLARWIALIGTLLTLLLSLVLWIGFDSSNAGF 60
Query: 60 QVVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFF 119
Q V E PWI I + L +D +S ++ VV+ ++ + + + + R +F+
Sbjct: 61 QFV--EKHPWI--PRFGISYHLGVDGIS-LLLVVLTALLTPLAV--LASWEEIKKRVKFY 113
Query: 120 SYLSFFTFAMLVLV-SSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRI 178
+ ++ V ++ +LL + +E + + Y LIG W K I A+ K F+ +
Sbjct: 114 MAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGGKNR-IYAATKFFLYTLL 172
Query: 179 GDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDS 238
G L++ + AIIYL Y+ + + +
Sbjct: 173 G--SLLMLV-AIIYL------------VVVYYNATGTFDIADLLNLPLPPGV-------Q 210
Query: 239 IAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMS-PL 296
+ L FF+ K LH WLPDA + PT S ++ A ++ G + + R S PL
Sbjct: 211 YWLF-LAFFIAFAVKMPMFPLHTWLPDAHVQAPTAGS-VLLAGILLKMGAYGLLRFSLPL 268
Query: 297 F-ELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYM---FVALGCRAY 352
F + S I LG I + A V L Q DIK++IAYS+ S +G++ A
Sbjct: 269 FPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGI 328
Query: 353 GASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTG 412
+IF + +H A LFL G V++ +D+ GGL +P + +A
Sbjct: 329 QGAIFQMISHGLSSAALFLLVG-VLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMAS-- 385
Query: 413 FGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAF---LTSFYSWRLMFLTFFG 469
G+P TS GF G F I+L F + A L + YS L FG
Sbjct: 386 LGLPGTS-GFVGEFL--ILLGS------FQVNPVIAFIATTGLILAAVYSLWLYQRVMFG 436
Query: 470 KMRVDKDISHKIHESPLVMQIPLFILAI 497
++ + ++ L++ +PL L +
Sbjct: 437 PVKNEVAKLKDLNGRELLILLPLVALLL 464
>gnl|CDD|180945 PRK07363, PRK07363, NAD(P)H-quinone oxidoreductase subunit M;
Validated.
Length = 501
Score = 101 bits (254), Expect = 5e-22
Identities = 132/519 (25%), Positives = 227/519 (43%), Gaps = 80/519 (15%)
Query: 7 VIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFG-HDVQVVKRE 65
V+++LP++GA+ GFF + T + V+ L+W +F F D + +E
Sbjct: 4 VLLWLPILGAIIIGFFPGNLPSARLRQITLVFAVLV--LAWSLFLLTQFDLSDPGMQFQE 61
Query: 66 IFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFF 125
PW GL + L +D LS + +V+NS+ + IYSIG + RPR +
Sbjct: 62 YLPWNEPLGLS--YSLGVDGLSLPL-LVLNSLLTWIAIYSIGE---NTERPRLY------ 109
Query: 126 TFAMLVLVSS--------DNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNR 177
+++++L++ NLL F +E + YLLI W ++ AS+K +
Sbjct: 110 -YSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGGEKRGY-ASIKFLIYTA 167
Query: 178 IGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHD 237
+ L ++ A I++L S FD +S ++ S
Sbjct: 168 VSGLLVLAAFLGIVWLSGSTSFDY-----------------DAISTQNLSL--------- 201
Query: 238 SIAIICLLFFLGAMGKSAQLL-LHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPL 296
+ +I L L G L+ LH WLPDA +P A++ + G + + R
Sbjct: 202 NTQLILLTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLR---- 257
Query: 297 FELSPF------VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR 350
F L F V + ++G I+ + A + Q DIKR++AYS+ +GY+ VA
Sbjct: 258 FGLQLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317
Query: 351 ---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYP---HLPRTCWMMI 404
+ ++ + +H ALLF G ++ G +D+ + GL LP T +++
Sbjct: 318 TQLSLLGAVAQMISHGLILALLFHLVG-IVERKVGTRDLDVLNGLMNPIRGLPLTSALLV 376
Query: 405 VGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMF 464
+ +A GIP G GF ++ I+ + ++++ F L + A+ LT+ Y L+
Sbjct: 377 LAGMASA--GIP----GLVGFVAEFIVFQGSFST--FPIPTLLCIVASGLTAVYFVILLN 428
Query: 465 LTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFG 503
T FG++ K+ S +IP IL +F G
Sbjct: 429 RTCFGRLDNKLAYYPKVLWSE---KIPALILTALILFLG 464
>gnl|CDD|181085 PRK07691, PRK07691, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 496
Score = 99.6 bits (249), Expect = 2e-21
Identities = 112/509 (22%), Positives = 215/509 (42%), Gaps = 64/509 (12%)
Query: 9 VFLPLIGAVFSGFFG-RLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIF 67
+ +P+I A+ F G R + +++ + SLL ++ A + + + H +Q ++
Sbjct: 10 ILIPVITAILLIFLGKRPIIQRYVALIGSLLTLVAAI---ILVANV-YKHGIQTLE---- 61
Query: 68 PWIIFDGLDIPWG--LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFF 125
P+G D ++++ + + I+ +V +YS + R R++ Y
Sbjct: 62 ----LGNWKAPFGIVFVADMFAALLVLTSSIITFLVILYSFQTIG--IERERYYYY--PS 113
Query: 126 TFAMLVLVS----SDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDL 181
ML V+ + ++ +F +E + +ASY+LI K ++ S+K ++N +
Sbjct: 114 VLFMLAGVNGAFLTGDIFNLFVFFEVMLMASYVLIVIGGTKIQ-LRESIKYVLINVVSSA 172
Query: 182 GLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAI 241
++A+ AI+Y SV V + ++ S + I +
Sbjct: 173 FFVVAV-AILY---SV------------------VGTLNMADISVKIAELSAGQTGLITV 210
Query: 242 ICLLFFLGAMGKSAQLLLHVWLPDAMEGP-TPVSALIHAATMVTAGVFLVARMSPLF--E 298
+ +LF K+ L+ WLP + P ++AL A + GV+ +AR LF
Sbjct: 211 VAILFLFVFATKAGLFPLYFWLPGSYYAPPIAIAALF-GALLTKVGVYAIARTFTLFFSH 269
Query: 299 LSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC---RAYGAS 355
+ F I +L +T F + DIK++I Y+ +G + V + +
Sbjct: 270 DTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGA 329
Query: 356 IFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGI 415
I++L KA LFL G +I + G D+++MGGL P WM + L+L GI
Sbjct: 330 IYYLIHDMIVKAALFLLIGIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLA--GI 386
Query: 416 PETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDK 475
P SGF+ K I+E + + + ++L ++ L + ++ F+G+ K
Sbjct: 387 PP----LSGFYGKFFIVEGTFEAGFYVSG-IIVLLSSLLVLYSVIKIFLKGFWGE---PK 438
Query: 476 DISHKIHESPLVMQIPLFILAIGSIFFGF 504
+ +P +L +I +G
Sbjct: 439 GYDLNNKVPVKKLLLPAVVLVAITILYGL 467
>gnl|CDD|183663 PRK12663, PRK12663, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 497
Score = 94.6 bits (236), Expect = 7e-20
Identities = 102/434 (23%), Positives = 186/434 (42%), Gaps = 60/434 (13%)
Query: 84 DTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLV-------SSD 136
D+LS++M + ++ + Y G + R F F +L++ + D
Sbjct: 76 DSLSALMVTTASFVATAIMAYGFGDIEHSGRR------YGFPPFILLLMAGVIGSFLTGD 129
Query: 137 --NLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLF 194
NL F E + +AS++LI +E ++ ++K V+N IG +L I + F
Sbjct: 130 LFNLYVWF---EVMLIASFVLITLGQEREQ-LRGAIKYVVLNLIGSWLFLLGIGLLYGTF 185
Query: 195 HSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKS 254
+++ + + D+ ++ I LLF L A G
Sbjct: 186 GTLNMAHIAMRLN------------------------DMGDTATLTTIALLFLL-AFGMK 220
Query: 255 AQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVAR-MSPLFELSPFVLD-CITVLGC 312
A L +WLP A P A + AA + G++ + R + LF +L + +
Sbjct: 221 AALFPFMWLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLATMAA 280
Query: 313 ITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGA---SIFHLFTHAFFKALL 369
IT A L DI+R+ Y S +G++ + L +IF+L K L
Sbjct: 281 ITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTAL 340
Query: 370 FLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKD 429
FL +GS++ + G + ++ +GGLY P + ++ A+ G+P FSGF+ K
Sbjct: 341 FLIAGSLV-RLTGYRSLQYLGGLYRKEPLFGALFLILIFAIG--GLPP----FSGFWGKV 393
Query: 430 IILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQ 489
++++ A + + + L+L + +T + +R+ FL ++G ++ PL +
Sbjct: 394 LLVQGALDNGAYILL-ALMLITSLITMYSLFRIFFLAYWGDKDGEEV---NFKPIPLYRK 449
Query: 490 IPLFILAIGSIFFG 503
+PL ILA+ I G
Sbjct: 450 LPLSILAVVVIAMG 463
>gnl|CDD|180580 PRK06473, PRK06473, NAD(P)H-quinone oxidoreductase subunit D4;
Validated.
Length = 500
Score = 94.0 bits (234), Expect = 1e-19
Identities = 134/523 (25%), Positives = 237/523 (45%), Gaps = 88/523 (16%)
Query: 7 VIVFLPLIGAVFSGFF-GRLMGK---QFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVV 62
++++PL+GA+ GF+ + GK A + S+L+++ L++ ++ G +
Sbjct: 4 ALIWIPLLGAILIGFWPSGINGKLARSVALVIASVLLLLSLVLAFQ--FDPG---NPNQQ 58
Query: 63 KREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYL 122
E PWI GL + L +D LS + +V+NS+ ++ IYS + RPRF+
Sbjct: 59 FTEFIPWIDSLGLS--YHLGVDGLS-LPLLVLNSLLTLIAIYSSD---ESIQRPRFY--- 109
Query: 123 SFFTFAMLVLVSS--------DNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFV 174
+++L+L+++ +LL F +E + YLLI W + A+ K
Sbjct: 110 ----YSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGY-AATKFL- 163
Query: 175 VNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVH 234
L AIS I+ L V F + W G S SF + + H
Sbjct: 164 --------LYTAISGILIL---VSFLGLV------WLSGAS---------SFDYEPLRSH 197
Query: 235 PHD-SIAIICLLFFLGAMGKSAQLL-LHVWLPDA-MEGPTPVSALIHAATMVTAGVFLVA 291
S ++ L L G L+ H WLPDA +E TPVS L+ A ++ G + +
Sbjct: 198 TLPLSTQLLLLAPILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLL-AGVLLKLGTYGLL 256
Query: 292 R--MSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC 349
R + E ++ + ++ + A+ + Q D+K+++AYS+ +GY+ +A
Sbjct: 257 RFGVGLFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAA 316
Query: 350 R---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLY-PH--LPRTCWMM 403
+ A++F + +H ALLFL G V++ G +D+ + GL P LP T +M
Sbjct: 317 ATPLSILAAVFQMISHGLISALLFLLVG-VVYKKTGSRDVDVLRGLLNPERGLPITGSLM 375
Query: 404 IVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLM 463
I+G +A GIP G GF ++ ++ ++ F L + LT+ Y L+
Sbjct: 376 ILGVMA--SAGIP----GMVGFIAEFLVFRGSFPI--FPVQTLLCMIGTGLTAVYFLLLV 427
Query: 464 FLTFFGKMRVDKDISHKIHESPLVM---QIPLFILAIGSIFFG 503
FFG++ + ++ P V+ ++P +LA+ + G
Sbjct: 428 NRVFFGRL------TAELSNLPRVLWSERLPALVLAVLIVVLG 464
>gnl|CDD|162524 TIGR01770, NDH_I_N, proton-translocating NADH-quinone
oxidoreductase, chain N. NADH-plastoquinone
oxidoreductase is used for the complex and this protein
is designated as subunit 2 or B. This model also
includes a subunit of a related complex in the archaeal
methanogen, Methanosarcina mazei, in which F420H2
replaces NADH and 2-hydroxyphenazine replaces the
quinone.
Length = 468
Score = 89.2 bits (222), Expect = 3e-18
Identities = 86/394 (21%), Positives = 158/394 (40%), Gaps = 42/394 (10%)
Query: 118 FFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNR 177
F+ L F + +LVSS++LL ++ G E L Y+L + +A +K F++
Sbjct: 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAALKRKSRFSTEAGLKYFILGA 163
Query: 178 IGDLGLILAISAIIYLFH-SVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPH 236
GL+L ++IY F S++F+ + S+ + + G+V
Sbjct: 164 FSS-GLLLFGISLIYGFTGSLNFEDLLLFLSNLGNDISLLLLGIV--------------- 207
Query: 237 DSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTA-GVFLVARMS 294
+G + K + + H+W+PD EG PTPV+A + V L
Sbjct: 208 --------FILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVLLRLFGY 259
Query: 295 PLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC---RA 351
LF SP + + ++ L Q +KR++AYS+ S +GY+ + L
Sbjct: 260 ILFAFSPIWQIFLLICAVLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEG 319
Query: 352 YGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQD-MRRMGGLYPHLPRTCWMMIVGTLAL 410
A +F++F +A F + + + GL+ P ++++ +L
Sbjct: 320 IKAVLFYIFIYALMSIGAFGVLALLRSRKDEWIEYISDFAGLFKTNPLIAILILIFMFSL 379
Query: 411 TGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGK 470
GIP +GFF K + S + +L + +++FY R++ + +F K
Sbjct: 380 A--GIPP----LAGFFGKFYVFFALLKSGLYLLAVIAILTSV-ISAFYYLRVVKVMYFDK 432
Query: 471 MRVDKDISHKIHESPLVMQIPLFILAIGSIFFGF 504
+ + L I A+ +F G
Sbjct: 433 PERR----IFSNPQSKAQSLLLSISALFIVFLGL 462
>gnl|CDD|181537 PRK08676, PRK08676, hydrogenase membrane subunit; Validated.
Length = 485
Score = 88.3 bits (219), Expect = 6e-18
Identities = 102/447 (22%), Positives = 182/447 (40%), Gaps = 53/447 (11%)
Query: 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMH--------DDPHRPRFFSYLSFFTFAMLVL 132
L ID L + ++ + + + +Y+ GY+ D + F+ + +
Sbjct: 59 LFIDHLGIFVVLIASVVFILAALYARGYVDHLLSNGELDPENLKVFYLGFNLLLSVITFA 118
Query: 133 VSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIY 192
SDNL + E + S +LI S +E+ A F+ + +I A +I+
Sbjct: 119 FFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIAS----TAMIFAFIGLIF 174
Query: 193 LFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMG 252
LF + A + + + S S S G L F+G +
Sbjct: 175 LFSLT------RQALGTGTLNWTELAAHASLLSPSVLGASF----------LFIFIGFLA 218
Query: 253 KSAQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMSPLFELS---PFVLDCIT 308
KS + H WLP A + P+ VSAL+ + T++ G++ + R+S L S + +
Sbjct: 219 KSGLVPFHTWLPAAYAKAPSVVSALL-SGTVLNIGIYGILRLSALLRQSGAAEQFSNVLI 277
Query: 309 VLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGA---SIFHLFTHAFF 365
LG + AA L Q ++K++IA+S+ +G M + +G A +FH+ H+
Sbjct: 278 GLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLV 337
Query: 366 KALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGF 425
K+ LF +G ++H R+ ++ P W +I+G+ A+ G F F
Sbjct: 338 KSGLFFSAG-ILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPP------FPLF 390
Query: 426 FSK-DIILEVAYTSSHFTFV--FFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIH 482
SK I+L++ S LLL A+ F L F + + + +
Sbjct: 391 LSKFFILLQLGGISVWLVLAVLLLLLLAASSFAIFL------LKAFTR-VSEGNADRPVF 443
Query: 483 ESPLVMQIPLFILAIGSIFFGFIFHDV 509
+PL M++P+ I+ + G F
Sbjct: 444 RTPLSMKLPIVIILALVLALGVYFPPG 470
>gnl|CDD|183662 PRK12662, PRK12662, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 492
Score = 85.9 bits (213), Expect = 3e-17
Identities = 120/514 (23%), Positives = 228/514 (44%), Gaps = 69/514 (13%)
Query: 9 VFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFP 68
V +PL+ AV L ++ I + +++ + F++ +F ++ G V+K +
Sbjct: 10 VIIPLLSAVVCAL---LKNRKLVKIISCIVVAVSFFIALVLFVQVYSG---GVIKYSLGG 63
Query: 69 WIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHR--------PRFFS 120
W G++ LR+D LS+ M V+VN I+ + +Y I P+R P F+S
Sbjct: 64 WGPPYGIE----LRVDILSATMLVLVNFIAVMSVLYGI-----YPNRKEISVNKIPSFYS 114
Query: 121 YLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGD 180
+L ++ S+++ ++ E ++SY+L+ K A+ A+ + ++ IG
Sbjct: 115 AFLLCLGGLLGILVSNDVFNIYVFLEISSISSYVLVAMGRDK-KALVAAFEYLIIGTIG- 172
Query: 181 LGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA 240
A YL IG + + F I P +
Sbjct: 173 --------ATFYLI----------------GIGFLYAITGTLNMGDMFLIIQDLPTNRAI 208
Query: 241 IICLLF-FLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARM----- 293
I +LF +G K+A H WL A E P+ +S + T ++L+ R+
Sbjct: 209 QIGVLFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFF-SGTSTKVMIYLIIRIVYDVF 267
Query: 294 -SPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAY 352
+ + + +L + F + + ++ DIKR+ AYS+ S +GY+ +A+ Y
Sbjct: 268 KANFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTY 327
Query: 353 ---GASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLA 409
A++ ++ H+ K+ LF+ SGS+ + G + L+ +P+ ++ +L+
Sbjct: 328 YGLAAAVAYIVNHSIVKSALFMVSGSISYHF-GTTKLEDCLNLWKSMPKITLAFVLLSLS 386
Query: 410 LTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFG 469
L G +P TS GF +K IL+ A+ S+ +LL + L+ Y W+++ +F
Sbjct: 387 LIG--MPPTS----GFVAKWYILD-AFIKSNAWIGLVVLLVGSGLSVIYVWKIVEALYFE 439
Query: 470 KMRVDKDISHKIHESPLVMQIPLFILAIGSIFFG 503
V+ + K ++P M + ++I+AI SI G
Sbjct: 440 SRMVESKANDKAFKTPNAMVLCIWIMAILSIIVG 473
>gnl|CDD|181206 PRK08042, PRK08042, formate hydrogenlyase subunit 3; Reviewed.
Length = 593
Score = 74.1 bits (182), Expect = 1e-13
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 259 LHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPF---VLDCITVLGCITA 315
LH W+P A + +A + + ++ G+ + +S L +P V + VLG ITA
Sbjct: 199 LHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGVA--LLVLGMITA 256
Query: 316 FFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGAS--------------IFHLFT 361
F L++H+I+R++AY T +G + + LG G + ++HL
Sbjct: 257 FVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLN 316
Query: 362 HAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLAL 410
H+ FK++LFLG+GSV G +D+ ++GG+ +P M+VG +A+
Sbjct: 317 HSLFKSVLFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAM 364
>gnl|CDD|130019 TIGR00944, 2a6301s04, Multicomponent K+:H+antiporter.
Length = 463
Score = 72.5 bits (178), Expect = 4e-13
Identities = 94/423 (22%), Positives = 162/423 (38%), Gaps = 43/423 (10%)
Query: 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQ 140
L +D S+++ + I+ V +YS+ R ++S + F + + +L
Sbjct: 70 LVLDRFSALLLCTTSIIALAVQLYSMARWGTARERHHYYSLVQFLLAGLNGAFLTGDLFN 129
Query: 141 MFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFD 200
+F +E + ASY L+ S K +K +K VN L SA+ + S+ +
Sbjct: 130 LFVFFEMMLAASYGLLVHGSTKIQ-LKEGLKYIAVN--------LVSSALFVIGVSLLYG 180
Query: 201 AVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDS--IAIICLLFFLGAMGKSAQLL 258
G ++ S + P + + L + + K+
Sbjct: 181 VA----------------GTLNMADLSTKLAALEPRSRGLVEMGSALLGVVFLVKAGMFP 224
Query: 259 LHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLF--ELSPFVLDCITVLGCITAF 316
L WLP A P P A + A + G++ + R+ L + F + + L +T
Sbjct: 225 LSFWLPTAYYAPPPPIAAVFGALLTKVGIYAIIRLHLLVFGTAAGFGHEWLVTLAMLTII 284
Query: 317 FAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGA---SIFHLFTHAFFKALLFLGS 373
F L ++ ++ Y+ +G + + G +I++L K LFL
Sbjct: 285 FGGIGVLAYQNMGKIAGYNVLVAVGVILAGVALGTDGMLAGAIYYLVHDMLTKGALFLLI 344
Query: 374 GSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILE 433
G VI G + GGL P W + L+L GIP SGF K I+
Sbjct: 345 GLVI-RGTGTATLEAYGGLIKRYPVLGWCFFICALSLA--GIPP----LSGFIGKFAIIS 397
Query: 434 VAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFL-TFFGKMRVDKDISHKIHESPLVMQIPL 492
+ +T+V LLL + L YS +F+ TF+G ++ + I PLV+
Sbjct: 398 GLFDMGDWTYVTLLLL--SSLAVLYSVNRIFIRTFWGSIK-TIPRVNVIEIKPLVVLAGA 454
Query: 493 FIL 495
I
Sbjct: 455 CIF 457
>gnl|CDD|183665 PRK12665, PRK12665, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 521
Score = 68.1 bits (167), Expect = 6e-12
Identities = 100/376 (26%), Positives = 170/376 (45%), Gaps = 56/376 (14%)
Query: 74 GLDIPWG--LRIDTLSSVMFVVVNSISAVVHIYSIGY-MHD-DPHRPRFFSYLSFFTFAM 129
G D P G L +D LS++M VV + + V +Y+IG + D D +P +S F
Sbjct: 63 GWDAPIGITLVVDRLSALMLVVSSVVLLAVLVYAIGQGIRDGDEEQP-----VSIFLPTY 117
Query: 130 LVLVS-------SDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLG 182
L+LV+ + +L ++ G+E + +ASY+L+ + ++A + +V+ + L
Sbjct: 118 LILVAGVSNAFLAGDLFNLYVGFEILLVASYVLLTLGATAAR-VRAGVTYVMVSMVSSLL 176
Query: 183 LILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242
++ I A++Y ++G ++ + ++ A+
Sbjct: 177 FLIGI-ALVY-----------------------AATGTLNMADLAVRLDELPSGTRTALF 212
Query: 243 CLLFFLGAMG-KSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFELS 300
+L L A G K+A L WLPD+ P PV+A + A + GV+ + R L
Sbjct: 213 AVL--LVAFGIKAAVFPLSFWLPDSYPTAPAPVTA-VFAGLLTKVGVYAIIRTHTLLFPG 269
Query: 301 PFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMF--VALGCRA-YGASIF 357
+ + V+ +T + Q DIKR+++++ S +GYM +AL A +I+
Sbjct: 270 GGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIY 329
Query: 358 HLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPE 417
++ H + LFL G +I AG +RR+GGL P + V L L GIP
Sbjct: 330 YVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLG--GIPP 386
Query: 418 TSIGFSGFFSKDIILE 433
FSGF K +LE
Sbjct: 387 ----FSGFIGKVALLE 398
>gnl|CDD|180572 PRK06459, PRK06459, hydrogenase 4 subunit B; Validated.
Length = 585
Score = 66.4 bits (162), Expect = 2e-11
Identities = 92/444 (20%), Positives = 158/444 (35%), Gaps = 69/444 (15%)
Query: 87 SSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWE 146
S ++ + + +YSI Y H S M ++++SDN L GWE
Sbjct: 46 LSFFSIISTIVWILASLYSIEYDHYGKW---LSSLYILTILGMAIVLTSDNYLLFLAGWE 102
Query: 147 GVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNA 206
+ + SY+ I + AFV G+L +L ++ + F + F
Sbjct: 103 IMTIPSYVAIALTKKNKRP------AFVFMAFGELSTVLILAGFAWAF-IISGTTNFSYL 155
Query: 207 SHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDA 266
+ I+ F+ MG L+ WLP A
Sbjct: 156 PSPVPL----------------------------ILASFGFIIKMGMMP-FLVSEWLPIA 186
Query: 267 MEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVL--GCITAFFAATVGLV 324
+ I +ATM GV+ + +M+ L + P +T+L G + F A V
Sbjct: 187 HGNAPSNFSAILSATMTLMGVYGILKMTILTQTIPIGYFGLTILAIGAFSILFGALYAYV 246
Query: 325 QHDIKRVIAYSTCSQLGYMFVALGCR-------------AYGASIFHLFTHAFFKALLFL 371
++K ++A+ST G + VALG + I + F H+ K LFL
Sbjct: 247 SENVKGLLAFSTIENNGAILVALGLYMVTKQLITSIEHFSLITVILYSFAHSVAKTGLFL 306
Query: 372 GSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTL-ALTGFGIPETSIGFSGFFSKDI 430
SG + Y R W+ + TL A + G+ G + + +
Sbjct: 307 SSGLQ----------EKQSITYSKKIRNRWIELGLTLLASSLSGLLPNIGGVASWLLLES 356
Query: 431 ILEVAYTSSHFTFVFFLLLFA--AFLTSFYSWRLM-FLTFFGKMRVDKDISHKIHESP-L 486
+ AY + + F++ A A + L+ ++T+ R K+ KI + P L
Sbjct: 357 LFMFAYVLHNVISILFIVTGAIIAMGEGLATALLIKYITYTSLFRNTKEQLSKIKKYPIL 416
Query: 487 VMQIPLFILAIGSIFFGFIFHDVF 510
+ + + IL + F
Sbjct: 417 LSALIVLILGFTLPYLISPFKTST 440
>gnl|CDD|183596 PRK12561, PRK12561, NAD(P)H-quinone oxidoreductase subunit 4;
Provisional.
Length = 504
Score = 65.4 bits (160), Expect = 4e-11
Identities = 108/465 (23%), Positives = 184/465 (39%), Gaps = 90/465 (19%)
Query: 34 FTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVV 93
++ F Y Q+V+R + W+ GL+ W L +D LS M +V
Sbjct: 16 LADFALMCYVFWQHYDPSSSSL----QLVER--YAWLPQIGLE--WSLGVDGLS--MPLV 65
Query: 94 VNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFA--MLVLVSSDNLLQMFFGWEGVGLA 151
+ +S ++ SI +PR F +L ++ + V ++ D LL F WE +
Sbjct: 66 L--LSGLITTLSIFASWKVTRKPRLFYFLMLVLYSAQIGVFLAQDLLL-FFLMWELELVP 122
Query: 152 SYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWK 211
YLLI W ++ A+ K + + + IL ++ +
Sbjct: 123 VYLLISIWGGQKRLY-AATKFILYTALASI-FIL-VAGLALALS---------------- 163
Query: 212 IGNSVSSGMV--SHRSFSFFGIDVHPHDSIAIICLLFFLGAMG-KSAQLLLHVWLPDAM- 267
G++ + + +S+ ++ ++ FL A G K LH WLPDA
Sbjct: 164 -GDTFTFDLAELGAKSYPL---------ALELLLYAGFLIAFGVKLPIFPLHTWLPDAHG 213
Query: 268 EGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLD--------CITVLGCITAFFAA 319
E PVS M+ AGV L L + +L + +LG + + A
Sbjct: 214 EASAPVS-------MILAGVLLKMGGYALIRFNVQMLPDAHVYFAPALAILGVVNIIYGA 266
Query: 320 TVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGA-----SIFHLFTHAFFKALLFLGSG 374
Q ++KR +AYS+ S +G FV LG A+ ++ + +H A LF +G
Sbjct: 267 LNAFAQDNVKRRLAYSSVSHMG--FVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTG 324
Query: 375 SV---IHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLA------LTGFGIPETSIGFSGF 425
H ++ + MGGL +P+T + ++A ++GF + E ++ F G
Sbjct: 325 VTYERTHTLS----IPNMGGLAKVMPKTFALFTASSMASLALPGMSGF-VSELTV-FLGI 378
Query: 426 FSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGK 470
S D Y+S+ T L LT Y ++ F+G
Sbjct: 379 TSSD-----VYSSTFRTITILLAAVGLILTPIYLLSMLRRVFYGP 418
>gnl|CDD|180504 PRK06277, PRK06277, hydrogenase subunit F; Validated.
Length = 478
Score = 65.4 bits (160), Expect = 4e-11
Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 23/205 (11%)
Query: 307 ITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC---RAYGASIFHLFTHA 363
+ L + F + L+Q D KR++AY SQ GY+ L A IFH H
Sbjct: 269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHV 328
Query: 364 FFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFS 423
+K+ LFLG+G V + ++R++GGL P +P +M++ LA++ G+P F+
Sbjct: 329 IYKSALFLGAGIVSY-RTKTSNLRKLGGLLPVMPVVAFMVLCAKLAIS--GVPP----FN 381
Query: 424 GFFSKDIILEVAYTSSHFTFVFFLLL-----FAAFLTSFYSWRLMFLTFFGKMRVDKDIS 478
GF SK ++ + A ++ +++ F + + +FY L++L +++
Sbjct: 382 GFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY---LIYLK-----PKPEELE 433
Query: 479 HKIHESPLVMQIPLFILAIGSIFFG 503
+K + P L +L I I G
Sbjct: 434 YKNKKVPKYAVFSLAVLTILCIILG 458
>gnl|CDD|179442 PRK02546, PRK02546, NAD(P)H-quinone oxidoreductase subunit 4;
Provisional.
Length = 525
Score = 57.8 bits (140), Expect = 8e-09
Identities = 115/487 (23%), Positives = 195/487 (40%), Gaps = 74/487 (15%)
Query: 7 VIVFLPLIGAVFSGFF-GRLMGKQ---FADI--FTSLLMVIGAFLSWYVFYEIGFGHDVQ 60
I+ P++ A+ F + GK +A I L+ + AF + Y F G +Q
Sbjct: 11 TIILFPIVAALLIPFIPDKGDGKTVRWYALIVGLIDFLITVYAFYTGYDFSNPG----LQ 66
Query: 61 VVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSIS--AVVHIYSIGYMHDDPHRPRF 118
+V+ + W+ L + W + D LS + ++ I+ AV+ + + + +P+
Sbjct: 67 LVES--YSWL--PQLGLTWSVGADGLSMPLILLTGFITTLAVLAAWPVTF------KPKL 116
Query: 119 FSYLSFFTFAMLVLV-SSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNR 177
F +L + + V + ++L F WE + YLL+ W K+ A+ K +
Sbjct: 117 FYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKR-QYAATKFILYTA 175
Query: 178 IGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHD 237
L ++LA A+ + + FD ++ + F
Sbjct: 176 GSSLFILLAALAMAFYGDTPTFDMT-----------------ALAAKDFGL--------- 209
Query: 238 SIAIICLLFFLGAMG-KSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSP 295
++C L A G K + LH WLPDA E PV L+ A ++ G + + RM+
Sbjct: 210 GFQLLCYAGLLIAYGVKLPIVPLHTWLPDAHGEATAPVHMLL-AGILLKMGGYALLRMNA 268
Query: 296 --LFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC-RAY 352
L + + VLG + +AA Q ++KR IAYS+ S +G++ + +G
Sbjct: 269 GMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDL 328
Query: 353 GAS--IFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPR------TCWMMI 404
G S + + +H A LF G+ + MGG+ + + C +
Sbjct: 329 GTSGAMLQMISHGLIGASLFFLVGATYDRTHTLM-LDEMGGVGQKMRKMFAMWTACSL-- 385
Query: 405 VGTLALTGF-GIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLM 463
+LAL G G + F GF + D AYT V FL LT Y ++
Sbjct: 386 -ASLALPGMSGFVAELMVFVGFATSD-----AYTLPFRVVVVFLAAVGVILTPIYLLSML 439
Query: 464 FLTFFGK 470
FFG
Sbjct: 440 REIFFGP 446
>gnl|CDD|179434 PRK02504, PRK02504, NAD(P)H-quinone oxidoreductase subunit 2;
Provisional.
Length = 513
Score = 51.2 bits (123), Expect = 7e-07
Identities = 59/246 (23%), Positives = 99/246 (40%), Gaps = 38/246 (15%)
Query: 128 AMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAI 187
M L + L+ +F E + +ASYLL G+ + +A++K LI A
Sbjct: 123 GMF-LSGATELVMIFISLETLSIASYLLTGYMKRDPRSNEAALKYL---------LIGAA 172
Query: 188 SAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFF 247
S+ I+L+ S + ++ I ++ + S + L+F
Sbjct: 173 SSAIFLYGSSLLYGLSGGSTQLSAIALALITS----PSL------------GLALALVFV 216
Query: 248 LGAMG-KSAQLLLHVWLPDAMEG-PTPVSALI----HAATMVTAGVFLVARMSPLFELSP 301
+ + K + + H W PD EG PTPV A + AA A LV E
Sbjct: 217 IAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPSFDEQWK 276
Query: 302 FVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC---RAYGASIFH 358
+ T L ++ V L Q +KR++AYS+ Q G++ + L Y + +F+
Sbjct: 277 LLF---TALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTEAGYASMVFY 333
Query: 359 LFTHAF 364
L + F
Sbjct: 334 LLAYLF 339
>gnl|CDD|183664 PRK12664, PRK12664, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 527
Score = 38.9 bits (91), Expect = 0.005
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Query: 310 LGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC-----RAYGASIFHLFTHAF 364
LG ITA + ++ +I+R++ Y+ Q+G + +A+G A G I +
Sbjct: 207 LGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGSSGVAIGILILQIVLSVV 266
Query: 365 FKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSG 424
++ LLF+ + SVI+ + ++ R+GGL+ + I+ L + F G +G
Sbjct: 267 YQTLLFMVADSVINR-TRKFNLNRVGGLF-KMSLEAMCCIIAILNMGAFP------GTAG 318
Query: 425 FFSKDIIL 432
F SK +I
Sbjct: 319 FVSKSLIT 326
>gnl|CDD|115131 pfam06455, NADH5_C, NADH dehydrogenase subunit 5 C-terminus. This
family represents the C-terminal region of several NADH
dehydrogenase subunit 5 proteins and is found in
conjunction with pfam00361 and pfam00662.
Length = 181
Score = 37.9 bits (89), Expect = 0.009
Identities = 44/204 (21%), Positives = 84/204 (41%), Gaps = 24/204 (11%)
Query: 458 YSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSS 517
YS+RL++ G I+E+ +M P+ LA GSIF G + + F
Sbjct: 1 YSFRLIYYVMTGSPNFSS--LSPINENNPIMINPMKRLAWGSIFGGSLLSWLIFPKPPMI 58
Query: 518 FWKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRF 577
+PL+++ + + +G + + SL +
Sbjct: 59 T-------------------LPLYLKLLALLVTILGLLLGLELSNL--SLKQLKKSLNFN 97
Query: 578 FYCFLQNAWYFDRIYDCLLVRPIVRLATILWKRVDLS-IDKYGPGGIVACVRYLSSYSSR 636
F + W+F + L+ + ++L L K++D ++K+GP GI + LS
Sbjct: 98 LSSFSSSMWFFPNLSHRLIPKLSLKLGQKLAKQLDQGWLEKFGPQGIAKTLMTLSKLIQN 157
Query: 637 LQTGYLDHYAFSMLIGISILVIVM 660
LQ G + Y S L+ + +L++++
Sbjct: 158 LQKGLIKIYLLSFLLWLLLLLLLI 181
>gnl|CDD|180634 PRK06591, PRK06591, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 432
Score = 37.5 bits (87), Expect = 0.010
Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 31/232 (13%)
Query: 118 FFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNR 177
F+ L F L ++++++ ++ E L+SY+LI + +S I A F
Sbjct: 117 FYGILLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGA----FDYLI 172
Query: 178 IGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHD 237
+G +G L + AI +L + + S M ++ + H +
Sbjct: 173 MGSIGATLILIAIGFL------------------LSITGSLNMTDIAAY----LQEHTNS 210
Query: 238 SIAIICLLFFL-GAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPL 296
I I + FFL GA+ K+A +H W+ A V + A G++++ + + +
Sbjct: 211 RIITIAIGFFLIGAILKTAFFPMHFWMMRAYNNTASVILVYLAGISTIIGIYIIYKFTYI 270
Query: 297 F----ELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMF 344
+ + + I + T A + K +I YS +Q+GY+F
Sbjct: 271 IIGYETIKTAITNFIRPIALATLIIAPYFAYQAKNFKNIIIYSCFTQIGYVF 322
>gnl|CDD|183666 PRK12666, PRK12666, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 528
Score = 37.5 bits (88), Expect = 0.011
Identities = 53/229 (23%), Positives = 83/229 (36%), Gaps = 42/229 (18%)
Query: 253 KSAQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMSPLF------ELSPFVLD 305
K+A L+ WLP A PV+AL A M G++ + R+S L + F D
Sbjct: 223 KAAMWPLNFWLPPAYAAASAPVAALF--AIMTKVGIYAILRLSTLLFGPEAGASAGFGQD 280
Query: 306 CITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC---RAYGASIFHLFTH 362
+ G T F A L ++R+ AY G + A+G A A++++L
Sbjct: 281 WLLPGGLATLAFGAIGVLAAQRLRRLAAYLVLVSSGTLLAAIGLGNPAATAAALYYLVHS 340
Query: 363 AFFKALLFLGSGSVIHAVAGEQD--------MRRMGGLYPHLPRTCWMMIVGTLALTGF- 413
A LFL + V ++ + L + I T+AL G
Sbjct: 341 TLAAAALFL----LADLVERQRGAAADRLAVTPELYDLDEEEEEEVGVAIPATMALLGLL 396
Query: 414 ---------GIPETSIGFSGFFSKDIILEVA----YTSSHFTFVFFLLL 449
G+P SGF K +L+ + + +LL
Sbjct: 397 FFICALALAGLPP----LSGFLGKFALLQALLNPPGAGAAWWLWALVLL 441
>gnl|CDD|168619 PRK06588, PRK06588, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 506
Score = 29.7 bits (67), Expect = 2.1
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 323 LVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLG 372
L++ ++KR+I Y T SQLG++ A+ + +I +L T F +L+ G
Sbjct: 215 LIEKNLKRLICYLTVSQLGFILAAISINS--PNIAYLITSFIFIHILYNG 262
>gnl|CDD|178340 PLN02739, PLN02739, serine acetyltransferase.
Length = 355
Score = 29.2 bits (65), Expect = 3.8
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 163 ESAIKASMKAFVVNRIGDLGLILAISAIIYL--FHSVDFDAVFQNASHYWKIGNSVSSGM 220
+S+I+ ++AF + D + SAI++L + ++ ++ A WK G + +
Sbjct: 142 QSSIRLDVQAF---KDRDPACLSYSSAILHLKGYLALQ---AYRVAHKLWKQGRKLLALA 195
Query: 221 VSHRSFSFFGIDVHP 235
+ R FGID+HP
Sbjct: 196 LQSRVSEVFGIDIHP 210
>gnl|CDD|180249 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 29.1 bits (66), Expect = 4.1
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 492 LFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVEYSSFIAFF 551
L L I +I +G + F S G L L ++V + I+
Sbjct: 396 LIYLGISTIIWGLLTGSFFGFSLPIFLPGGYLELPEGYPSLSTENDVMTIL----IISLL 451
Query: 552 VGFFSAFLMYII 563
+G FL ++
Sbjct: 452 IGVIHLFLGLLL 463
>gnl|CDD|177517 PHA03072, PHA03072, putative viral membrane protein; Provisional.
Length = 190
Score = 28.1 bits (63), Expect = 7.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 183 LILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSS 218
+ILAIS ++ F + D VF + Y +I N+V S
Sbjct: 37 IILAISVLLLWFQTSDNS-VFSELTKYARIKNNVKS 71
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.334 0.146 0.465
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 11,293,184
Number of extensions: 775469
Number of successful extensions: 3511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3225
Number of HSP's successfully gapped: 168
Length of query: 666
Length of database: 5,994,473
Length adjustment: 100
Effective length of query: 566
Effective length of database: 3,833,673
Effective search space: 2169858918
Effective search space used: 2169858918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 60 (26.9 bits)