BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780865|ref|YP_003065278.1| NADH dehydrogenase subunit L
[Candidatus Liberibacter asiaticus str. psy62]
(666 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780865|ref|YP_003065278.1| NADH dehydrogenase subunit L [Candidatus Liberibacter asiaticus
str. psy62]
Length = 666
Score = 1337 bits (3460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/666 (100%), Positives = 666/666 (100%)
Query: 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQ 60
MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQ
Sbjct: 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQ 60
Query: 61 VVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFS 120
VVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFS
Sbjct: 61 VVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFS 120
Query: 121 YLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGD 180
YLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGD
Sbjct: 121 YLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGD 180
Query: 181 LGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA 240
LGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA
Sbjct: 181 LGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA 240
Query: 241 IICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELS 300
IICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELS
Sbjct: 241 IICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELS 300
Query: 301 PFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLF 360
PFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLF
Sbjct: 301 PFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLF 360
Query: 361 THAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSI 420
THAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSI
Sbjct: 361 THAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSI 420
Query: 421 GFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHK 480
GFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHK
Sbjct: 421 GFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHK 480
Query: 481 IHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPL 540
IHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPL
Sbjct: 481 IHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPL 540
Query: 541 WVEYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPI 600
WVEYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPI
Sbjct: 541 WVEYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPI 600
Query: 601 VRLATILWKRVDLSIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVM 660
VRLATILWKRVDLSIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVM
Sbjct: 601 VRLATILWKRVDLSIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVM 660
Query: 661 LLQGNI 666
LLQGNI
Sbjct: 661 LLQGNI 666
>gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus
str. psy62]
Length = 499
Score = 80.9 bits (198), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 126/249 (50%), Gaps = 16/249 (6%)
Query: 260 HVWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMSPLFEL-SPFVLDCITVLGCITAFF 317
H WLP+A ++ PT S + + G + + PLF L S + I L I +
Sbjct: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288
Query: 318 AATVGLVQHDIKRVIAYSTCSQLGYMFVAL--GCRA-YGASIFHLFTHAFFKALLFLGSG 374
A+ V +VQ DIK++IAYS+ + +GY+ + + G ++ ++F + +H + LF G
Sbjct: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348
Query: 375 SVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEV 434
VI+ +D+ GGL ++PR +M+V T+A G+P T SGF + +++
Sbjct: 349 -VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMA--NMGLPGT----SGFIGEFLVIMS 401
Query: 435 AYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFI 494
+ +S+ V L F L++ YS L FG + +K ++ + L + ++
Sbjct: 402 VFQNSNTVAV--LASFGVVLSALYSLWLYRKVVFGVSKCEK--VQQLKDLSLRERCMVYP 457
Query: 495 LAIGSIFFG 503
+A+ ++FFG
Sbjct: 458 IAVLTVFFG 466
>gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 56.2 bits (134), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 158/354 (44%), Gaps = 49/354 (13%)
Query: 128 AMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAI 187
ML ++S+++++ + E A Y+LI +I+A++K FV+
Sbjct: 118 GMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSS------- 170
Query: 188 SAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFF 247
+L + + F F + + +I S+ G HRSF V + I+ LFF
Sbjct: 171 ---AFLLYGISFIYGFTGCTGFSQIATSLFIG---HRSF------VLIVGVVLILVGLFF 218
Query: 248 LGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVT-AGVFLVARMSPLFELSPFVLDC 306
K A + H+W+PD EG +P+ AT+ A + R++ +F P +
Sbjct: 219 -----KMALVPFHMWIPDVYEG-SPMFMTAFLATIPKFATTMALCRITSVFW--PMLSGL 270
Query: 307 ITVLGCI---TAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHA 363
+ + C+ + + V + Q D+KR++AYS+ GY + G I + +
Sbjct: 271 LPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLG--IVAMVRYM 328
Query: 364 FFKALLFLGSGSVIHAVAGE-----QDMRRMGGLYPH-LPRTCWMMI-VGTLALTGFGIP 416
++ +G S I ++ + Q++ + GL + TC + I + +LA GIP
Sbjct: 329 VIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLA----GIP 384
Query: 417 ETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGK 470
F+GFF K +L ++ F + + L ++ ++++Y R++ + +F +
Sbjct: 385 P----FAGFFGKYFLL-ISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQ 433
>gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 440
Score = 26.2 bits (56), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 485 PLVMQIPLFILAIG-SIFFGFIFHDVFFGSAYSSFWKGALFA 525
P + P F IG I+ I +V G YSSFW F+
Sbjct: 389 PFSARSPAFSTVIGLMIYPQLIAKEVDCGEEYSSFWSKRQFS 430
>gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 482
Score = 25.0 bits (53), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 475 KDISHKIHESPLVMQIPLFILAIGSI----FFGFIFHDVFFGSAYSSFWKGA-LFASSSN 529
K +S IHES P FI+ G I F+F DV + S+ + G + A+
Sbjct: 177 KRLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGT 236
Query: 530 NVLERYHEVPLWVE 543
VLE +PL V+
Sbjct: 237 IVLEEPDALPLAVQ 250
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.334 0.146 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,528
Number of Sequences: 1233
Number of extensions: 18616
Number of successful extensions: 103
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 13
length of query: 666
length of database: 328,796
effective HSP length: 80
effective length of query: 586
effective length of database: 230,156
effective search space: 134871416
effective search space used: 134871416
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 41 (20.4 bits)