HHsearch alignment for GI: 254780866 and conserved domain: CHL00011
>CHL00011 ndhD NADH dehydrogenase subunit 4.
Probab=100.00 E-value=0 Score=707.98 Aligned_cols=486 Identities=34% Similarity=0.657 Sum_probs=431.3
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCEEEEEEEEECCCC-CEEE
Q ss_conf 983-0789999999999999987203553035799999999999999999999-863088881899986313485-4054
Q gi|254780866|r 1 MNL-PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRSSFQMIEYYHWIDY-FCSY 77 (499)
Q Consensus 1 m~~-p~l~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 77 (499)
T Consensus 1 M~~~P~L~lli~lPllga~li~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Wi~~~gi~~ 78 (500)
T CHL00011 1 MNYFPWLTIIVVLPIFAGSLIFFLPHRGN--KVIRWYTICICLLELLLTTYAFCYHFQLDDPLIQLVEDYKWINFFDFHW 78 (500)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEE
T ss_conf 99877999999999999999999744231--3999999999999999999999998076888568997344246578068
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCC
Q ss_conf 66522588999999999999999752011210023567899986302430265404331112343103431235531234
Q gi|254780866|r 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG 157 (499)
Q Consensus 78 ~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~ 157 (499)
T Consensus 79 ~lgiDgLs~~lvlLt~~i~~l~~l~s~~~-~~~~~~f~~l~L~~~~~~~G~~~s~dl~~~yvf~E~~~i~sy~LI~~~g~ 157 (500)
T CHL00011 79 RLGIDGLSIGLILLTGFITTLATLAAWPV-TRNSRLFHFLMLAMYSGQIGLFSSQDLLLFFLMWELELIPVYLLLSMWGG 157 (500)
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 87316878999999999999999840432-46754999999999999999999753999999999999878751110488
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 3323210001135544556776665544321---0001003443210133037899998541034445540002320101
Q gi|254780866|r 158 SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE---KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 (499)
Q Consensus 158 ~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~---~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~ 234 (499)
T Consensus 158 ~~~~~aa~k~~l~t~~gs~~lL~gi~~l~~~~~~~~t~~~~~l~~~-~~~~~~~~~~~~~~ligf~vK~~~fP~H~WlPd 236 (500)
T CHL00011 158 KKRLYSATKFILYTAGGSIFLLIGVLGMGLYGSNEPTLNFETLANQ-SYPVALEILFYIGFLIAFAVKLPIIPLHTWLPD 236 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 8999999999999988899999999999999854488899999844-563259999999999999985284546011677
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHH
Q ss_conf 00022223443333232233321110000111223310000000001222221221110000244322332100135402
Q gi|254780866|r 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 (499)
Q Consensus 235 ~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i 314 (499)
T Consensus 237 a~~~ap~~~s~llsg~~~k~g~y~l~R~~~~~~~~~~~~~~~~l~~lg~it~i~g~~~Al~Q~d~KrllAYSsis~~G~i 316 (500)
T CHL00011 237 THGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSLFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFI 316 (500)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77789839999999999998887779850001423789999999999999999999999997017888898417448899
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCC
Q ss_conf 33310487542210234555421023330356777764200111100235565420233201345555301024443112
Q gi|254780866|r 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 (499)
Q Consensus 315 ~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~ 394 (499)
T Consensus 317 ~lg~~~~~~~g~~ga~~~~~~H~~~k~~LFl~~g~i~~~~gt~~i~~lgGl~~~~P~~a~~~~i~~la~~G~P~~~GF~~ 396 (500)
T CHL00011 317 IIGIGSITDTGLNGAILQMISHGFIGAALFFLAGTSYDRIRLLYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVA 396 (500)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHCCCCHHHHCHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99998706889999899999999999999999999998158775140378076664999999999999816875253889
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 289999999865999-------999999999999999999999972889876-555687889126899999999999997
Q gi|254780866|r 395 EFLVIMSVFQNSNTV-------AVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFG 466 (499)
Q Consensus 395 k~~i~~~~~~~~~~~-------~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~l~~~~i~lG 466 (499)
T Consensus 397 k~~i~~g~~~~~~~~~~~~~~~~~i~~~g~il~a~Y~l~~~~~~f~g~~~~~~~~~~~~d~~~~e~~~~~~l~~~~i~~G 476 (500)
T CHL00011 397 ELIVFFGIITSQKYLLMFKILITFVMAIGMILTPIYLLSMLRQMFYGYKLFNVPNSYFFDSGPRELFISICLLLPVIGIG 476 (500)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999971643257899999999999999999999999999779988766533566898889999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 724889999999999998520200
Q gi|254780866|r 467 IYPVPIRDTFSVPLSSIIENYTLK 490 (499)
Q Consensus 467 i~p~~~~~~~~~~~~~l~~~~~~~ 490 (499)
T Consensus 477 l~P~~~l~~~~~~v~~ll~~~~~~ 500 (500)
T CHL00011 477 IYPDFVLSLSVDKVEAILSNYFYR 500 (500)
T ss_pred HCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 375999998999999998753259