HHsearch alignment for GI: 254780866 and conserved domain: CHL00025
>CHL00025 ndhF NADH dehydrogenase subunit 5.
Probab=100.00 E-value=0 Score=615.59 Aligned_cols=458 Identities=21% Similarity=0.371 Sum_probs=387.0
Q ss_pred CHHHHHHHHHHHHHHHHHH----HH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC---CCE
Q ss_conf 0789999999999999987----20-355303579999999999999999999986308888189998631348---540
Q gi|254780866|r 4 PFLSIVTFLPFLGVFVILF----SS-YLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID---YFC 75 (499)
Q Consensus 4 p~l~lii~lPll~~li~~~----~~-~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 75 (499)
T Consensus 6 ~~~wlip~~Pl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~~~w~~~~~~~~ 83 (738)
T CHL00025 6 QYAWIIPFLPLPVSMLIGLGLLLFPTATKNLRRMWAFLSILLLSIVMIFSLNLSIQQINGSSIYQY--LWSWTINNDFSL 83 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE--EEEEEEECCEEE
T ss_conf 777999998799999999999852221333131999999999999999999999999649982799--876177588616
Q ss_pred EEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEE
Q ss_conf 546652258899999999999999975201121--002356789998630243026540433111234310343123553
Q gi|254780866|r 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 (499)
Q Consensus 76 ~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~--~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~ 153 (499)
T Consensus 84 ~~~~~~D~ls~~m~~~vt~v~~lv~iYS~~Ym~~d~~~~rff~~l~lf~~~ml~lv~s~nl~~~fv~wE~~gl~SylLIg 163 (738)
T CHL00025 84 EFGYLIDPLTSIMLILITTVGILVLIYSDNYMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIG 163 (738)
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHE
T ss_conf 88889736889999999999999999958971799980579999999999999999947499999999999999878411
Q ss_pred ECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC-------CCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 12343-32321000113554455677666554432100010034432101-------33037899998541034445540
Q gi|254780866|r 154 VWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK-------FPFSIQYWMWIAFFCSFAIKIPM 225 (499)
Q Consensus 154 ~~~~~-~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~-------~~~~~~~~~~~ll~~g~~~K~~~ 225 (499)
T Consensus 164 f~~~~~~a~~aa~kafi~~riGd~~~l~gi~~l~~~~gt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~KsAq 243 (738)
T CHL00025 164 FWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSFEFRDLFEIFNNLIYNNEVNLLFATLCAFLLFLGPVAKSAQ 243 (738)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 32388578899999999997999999999999999985877999999998765426766799999999999999987430
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 0023201010002222344333-323223332111000011122331000000000122222122111000024432233
Q gi|254780866|r 226 FPFHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 (499)
Q Consensus 226 ~PfH~WlP~~y~~ap~~~sall-s~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllA 304 (499)
T Consensus 244 ~Plh~WLPdAm-~~PTPvSAlihaatmV~aGvyl~~R~~-~~~~~-~p~~~~~v~~ig~~T~~~~a~~a~~q~DiKr~LA 320 (738)
T CHL00025 244 FPLHVWLPDAM-EGPTPISALIHAATMVAAGIFLVARLL-PLFIV-IPYIMNLISLIGIITALLGATLALAQKDIKRGLA 320 (738)
T ss_pred CCCCCCCCHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75500250320-599708899988789884476563472-67650-6899999999999999999999986887888888
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH---------HCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 2100135402333104875422102345554210233303567777642---------0011110023556542023320
Q gi|254780866|r 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR---------LHTRDIFAYGGLVHNMPRYAVV 375 (499)
Q Consensus 305 ySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~---------~g~~~l~~l~Gl~~~~P~~~~~ 375 (499)
T Consensus 321 yST~sQlGym~~~~g~g~---~~aa~~Hl~~Ha~fKalLFl~aGsvih~~~~~~~~~~~~~qd~~~mgGl~k~mP~t~~~ 397 (738)
T CHL00025 321 YSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLGSGSVIHSMEPIVGYSPDKSQNMVLMGGLRKYMPITKTT 397 (738)
T ss_pred HHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHH
T ss_conf 758988899999646995---89999999999999999998888999971021245767770488864945586699999
Q ss_pred HHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----------------
Q ss_conf 1345555301024443112289999999865999999999999999999999999972889876----------------
Q gi|254780866|r 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE---------------- 439 (499)
Q Consensus 376 ~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~---------------- 439 (499)
T Consensus 398 f~ig~lal~GiPp~~GF~SKd~Il~~a~~~~~~l~~~~~~tA~lTAFYm~Rl~fltF~G~~R~~~~~~~~~~~~~~~~~~ 477 (738)
T CHL00025 398 FLLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKNSSFYSIS 477 (738)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99988998268641258769999999987462999999999999999999999822478665322324567778642033
Q ss_pred -----------------------------------------------------CCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -----------------------------------------------------555687889126899999999999997
Q gi|254780866|r 440 -----------------------------------------------------KVQQLKDLSLRERCMVYPIAVLTVFFG 466 (499)
Q Consensus 440 -----------------------------------------------------~~~~~~~~~~~~~~~~~~l~~~~i~lG 466 (499)
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pHESP~~MtlPLiILAi~Sv~~G 557 (738)
T CHL00025 478 LWGKEESKKLNKLLPLLTMNNNEGVSFFSKKKYKIDGNVRNMTRPFSHFGNKKTFSYPHESDNTMLFPLLVLLLFTLFIG 557 (738)
T ss_pred HHHCCHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 43010033320230123125654433000122334543223566665666667878877874024899999999999997
Q ss_pred HHH
Q ss_conf 724
Q gi|254780866|r 467 IYP 469 (499)
Q Consensus 467 i~p 469 (499)
T Consensus 558 ~ig 560 (738)
T CHL00025 558 FIG 560 (738)
T ss_pred HHC
T ss_conf 621