HHsearch alignment for GI: 254780866 and conserved domain: CHL00025

>CHL00025 ndhF NADH dehydrogenase subunit 5.
Probab=100.00  E-value=0  Score=615.59  Aligned_cols=458  Identities=21%  Similarity=0.371  Sum_probs=387.0

Q ss_pred             CHHHHHHHHHHHHHHHHHH----HH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC---CCE
Q ss_conf             0789999999999999987----20-355303579999999999999999999986308888189998631348---540
Q gi|254780866|r    4 PFLSIVTFLPFLGVFVILF----SS-YLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID---YFC   75 (499)
Q Consensus         4 p~l~lii~lPll~~li~~~----~~-~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   75 (499)
T Consensus         6 ~~~wlip~~Pl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~~~w~~~~~~~~   83 (738)
T CHL00025          6 QYAWIIPFLPLPVSMLIGLGLLLFPTATKNLRRMWAFLSILLLSIVMIFSLNLSIQQINGSSIYQY--LWSWTINNDFSL   83 (738)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE--EEEEEEECCEEE
T ss_conf             777999998799999999999852221333131999999999999999999999999649982799--876177588616


Q ss_pred             EEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEE
Q ss_conf             546652258899999999999999975201121--002356789998630243026540433111234310343123553
Q gi|254780866|r   76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG  153 (499)
Q Consensus        76 ~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~--~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~  153 (499)
T Consensus        84 ~~~~~~D~ls~~m~~~vt~v~~lv~iYS~~Ym~~d~~~~rff~~l~lf~~~ml~lv~s~nl~~~fv~wE~~gl~SylLIg  163 (738)
T CHL00025         84 EFGYLIDPLTSIMLILITTVGILVLIYSDNYMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIG  163 (738)
T ss_pred             EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHE
T ss_conf             88889736889999999999999999958971799980579999999999999999947499999999999999878411


Q ss_pred             ECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC-------CCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             12343-32321000113554455677666554432100010034432101-------33037899998541034445540
Q gi|254780866|r  154 VWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK-------FPFSIQYWMWIAFFCSFAIKIPM  225 (499)
Q Consensus       154 ~~~~~-~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~-------~~~~~~~~~~~ll~~g~~~K~~~  225 (499)
T Consensus       164 f~~~~~~a~~aa~kafi~~riGd~~~l~gi~~l~~~~gt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~KsAq  243 (738)
T CHL00025        164 FWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSFEFRDLFEIFNNLIYNNEVNLLFATLCAFLLFLGPVAKSAQ  243 (738)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             32388578899999999997999999999999999985877999999998765426766799999999999999987430


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf             0023201010002222344333-323223332111000011122331000000000122222122111000024432233
Q gi|254780866|r  226 FPFHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA  304 (499)
Q Consensus       226 ~PfH~WlP~~y~~ap~~~sall-s~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllA  304 (499)
T Consensus       244 ~Plh~WLPdAm-~~PTPvSAlihaatmV~aGvyl~~R~~-~~~~~-~p~~~~~v~~ig~~T~~~~a~~a~~q~DiKr~LA  320 (738)
T CHL00025        244 FPLHVWLPDAM-EGPTPISALIHAATMVAAGIFLVARLL-PLFIV-IPYIMNLISLIGIITALLGATLALAQKDIKRGLA  320 (738)
T ss_pred             CCCCCCCCHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             75500250320-599708899988789884476563472-67650-6899999999999999999999986887888888


Q ss_pred             CCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH---------HCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             2100135402333104875422102345554210233303567777642---------0011110023556542023320
Q gi|254780866|r  305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR---------LHTRDIFAYGGLVHNMPRYAVV  375 (499)
Q Consensus       305 ySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~---------~g~~~l~~l~Gl~~~~P~~~~~  375 (499)
T Consensus       321 yST~sQlGym~~~~g~g~---~~aa~~Hl~~Ha~fKalLFl~aGsvih~~~~~~~~~~~~~qd~~~mgGl~k~mP~t~~~  397 (738)
T CHL00025        321 YSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLGSGSVIHSMEPIVGYSPDKSQNMVLMGGLRKYMPITKTT  397 (738)
T ss_pred             HHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHH
T ss_conf             758988899999646995---89999999999999999998888999971021245767770488864945586699999


Q ss_pred             HHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----------------
Q ss_conf             1345555301024443112289999999865999999999999999999999999972889876----------------
Q gi|254780866|r  376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE----------------  439 (499)
Q Consensus       376 ~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~----------------  439 (499)
T Consensus       398 f~ig~lal~GiPp~~GF~SKd~Il~~a~~~~~~l~~~~~~tA~lTAFYm~Rl~fltF~G~~R~~~~~~~~~~~~~~~~~~  477 (738)
T CHL00025        398 FLLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKNSSFYSIS  477 (738)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             99988998268641258769999999987462999999999999999999999822478665322324567778642033


Q ss_pred             -----------------------------------------------------CCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             -----------------------------------------------------555687889126899999999999997
Q gi|254780866|r  440 -----------------------------------------------------KVQQLKDLSLRERCMVYPIAVLTVFFG  466 (499)
Q Consensus       440 -----------------------------------------------------~~~~~~~~~~~~~~~~~~l~~~~i~lG  466 (499)
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pHESP~~MtlPLiILAi~Sv~~G  557 (738)
T CHL00025        478 LWGKEESKKLNKLLPLLTMNNNEGVSFFSKKKYKIDGNVRNMTRPFSHFGNKKTFSYPHESDNTMLFPLLVLLLFTLFIG  557 (738)
T ss_pred             HHHCCHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             43010033320230123125654433000122334543223566665666667878877874024899999999999997


Q ss_pred             HHH
Q ss_conf             724
Q gi|254780866|r  467 IYP  469 (499)
Q Consensus       467 i~p  469 (499)
T Consensus       558 ~ig  560 (738)
T CHL00025        558 FIG  560 (738)
T ss_pred             HHC
T ss_conf             621