HHsearch alignment for GI: 254780866 and conserved domain: CHL00049
>CHL00049 ndhB NADH dehydrogenase subunit 2.
Probab=100.00 E-value=0 Score=585.59 Aligned_cols=454 Identities=18% Similarity=0.248 Sum_probs=371.1
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHH
Q ss_conf 99999998720355303579999999999999999999986308888189998631348540546652258899999999
Q gi|254780866|r 14 FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTT 93 (499)
Q Consensus 14 ll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iD~ls~~f~~l~~ 93 (499)
T Consensus 25 ~~~~~~~ll~~~~~~~~~~~~--~~~ls~~~l~~~~~~l~~~~~~~~~~~---------f--~g~~~~D~~s~~~~~ii~ 91 (498)
T CHL00049 25 IFGLILLLMIDLTSDQKDIPW--LYFISSTSLVMSITALLFQWREEPMIS---------F--SGNFQTNNFNEIFRFLIL 91 (498)
T ss_pred HHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCC---------C--CCCEEECHHHHHHHHHHH
T ss_conf 999999999999636541169--999999999999999999658986543---------4--661687658899999999
Q ss_pred HHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECC-CCCCCCCCCHHHH
Q ss_conf 9999999752011210---02356789998630243026540433111234310343123553123-4332321000113
Q gi|254780866|r 94 FLTPFCILSSWKSIQE---NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFL 169 (499)
Q Consensus 94 ~i~~l~~~ys~~~~~~---~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~-~~~~~~aa~ky~i 169 (499)
T Consensus 92 ~~~~l~~l~s~~y~~~~~~~~~Ef~~l~l~a~lG~~~l~~a~dl~~lfl~lEl~sl~sY~Lv~~~~~~~~s~eAalKYfl 171 (498)
T CHL00049 92 LCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDVRSNEATMKYLL 171 (498)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999999756776648999999999989999986279999999999999999998943378678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHC----CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55445567766655443210-0010034432101----330378999985410344455400023201010002222344
Q gi|254780866|r 170 YTFFGSIFMLFAIVVMCWEK-KTSSIIDLYAMSK----FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 (499)
Q Consensus 170 ~~~~~s~~lL~g~~~l~~~~-gs~~~~~~~~~~~----~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~s 244 (499)
T Consensus 172 lg~~ss~~lL~GisllYg~tggs~~l~~i~~~~~~~~~~~~~~~~~~l~lil~G~~fK~a~~PFH~WlPDvY~gAPtpvs 251 (498)
T CHL00049 172 MGGASSSILVYGFSWLYGLSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSLAPFHQWTPDVYEGSPTPVV 251 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHH
T ss_conf 99888999999999999993680009999999875344440799999999999999986225323223557447978999
Q ss_pred CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCC-CC
Q ss_conf 33332322333211100001112233100000000012222212211100002443223321001354023331048-75
Q gi|254780866|r 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSG-MK 323 (499)
Q Consensus 245 alls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~-~~ 323 (499)
T Consensus 252 a~ls~~~K~a~~~~l~Rl~~~~~~~~~~~~~~~l~ila~lSmi~G~l~Al~Q~~iKRlLAYSSIsh~Gyillgl~~g~~~ 331 (498)
T CHL00049 252 AFLSVTSKVAASALATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSN 331 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99999999999999999999873403789999999999999999999999886430777678687768999999966458
Q ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHH
Q ss_conf 42210234555421023330356777764200111100235565420233201345555301024443112289999999
Q gi|254780866|r 324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 (499)
Q Consensus 324 ~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~ 403 (499)
T Consensus 332 ~g~~~~~~yl~~y~~~~~~~F~~i~~~~~~~g~~~i~~l~GL~~~~P~~a~~~~i~~lSLaGiPP~~GF~~K~~if~~~~ 411 (498)
T CHL00049 332 DGYASMITYMLFYIFMNLGTFACIILFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGW 411 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999998317204998771876469999999999999847201105999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86599-9999999999999999999999972889876555--687889------12689999999999999772488999
Q gi|254780866|r 404 QNSNT-VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ--QLKDLS------LRERCMVYPIAVLTVFFGIYPVPIRD 474 (499)
Q Consensus 404 ~~~~~-~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~--~~~~~~------~~~~~~~~~l~~~~i~lGi~p~~~~~ 474 (499)
T Consensus 412 ~~g~~~l~~i~~l~Svis~~YYlrii~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~gi~~~pi~~ 491 (498)
T CHL00049 412 QAGLYFLVSIGLLTSVVSIYYYLKIIKLLMTGRNQEITPYVRNYRRSPWSLRSNNSIELSMIVCVIASTIPGISMNPIIA 491 (498)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 86969999999999999999999999999328997667543457887400255564999999999999998825168999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780866|r 475 TFSVPL 480 (499)
Q Consensus 475 ~~~~~~ 480 (499)
T Consensus 492 ~a~~~~ 497 (498)
T CHL00049 492 IAQDTL 497 (498)
T ss_pred HHHHHC
T ss_conf 998726