HHsearch alignment for GI: 254780866 and conserved domain: CHL00049

>CHL00049 ndhB NADH dehydrogenase subunit 2.
Probab=100.00  E-value=0  Score=585.59  Aligned_cols=454  Identities=18%  Similarity=0.248  Sum_probs=371.1

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHH
Q ss_conf             99999998720355303579999999999999999999986308888189998631348540546652258899999999
Q gi|254780866|r   14 FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTT   93 (499)
Q Consensus        14 ll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iD~ls~~f~~l~~   93 (499)
T Consensus        25 ~~~~~~~ll~~~~~~~~~~~~--~~~ls~~~l~~~~~~l~~~~~~~~~~~---------f--~g~~~~D~~s~~~~~ii~   91 (498)
T CHL00049         25 IFGLILLLMIDLTSDQKDIPW--LYFISSTSLVMSITALLFQWREEPMIS---------F--SGNFQTNNFNEIFRFLIL   91 (498)
T ss_pred             HHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCC---------C--CCCEEECHHHHHHHHHHH
T ss_conf             999999999999636541169--999999999999999999658986543---------4--661687658899999999


Q ss_pred             HHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECC-CCCCCCCCCHHHH
Q ss_conf             9999999752011210---02356789998630243026540433111234310343123553123-4332321000113
Q gi|254780866|r   94 FLTPFCILSSWKSIQE---NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFL  169 (499)
Q Consensus        94 ~i~~l~~~ys~~~~~~---~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~-~~~~~~aa~ky~i  169 (499)
T Consensus        92 ~~~~l~~l~s~~y~~~~~~~~~Ef~~l~l~a~lG~~~l~~a~dl~~lfl~lEl~sl~sY~Lv~~~~~~~~s~eAalKYfl  171 (498)
T CHL00049         92 LCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDVRSNEATMKYLL  171 (498)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99999999999999756776648999999999989999986279999999999999999998943378678999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHC----CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55445567766655443210-0010034432101----330378999985410344455400023201010002222344
Q gi|254780866|r  170 YTFFGSIFMLFAIVVMCWEK-KTSSIIDLYAMSK----FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS  244 (499)
Q Consensus       170 ~~~~~s~~lL~g~~~l~~~~-gs~~~~~~~~~~~----~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~s  244 (499)
T Consensus       172 lg~~ss~~lL~GisllYg~tggs~~l~~i~~~~~~~~~~~~~~~~~~l~lil~G~~fK~a~~PFH~WlPDvY~gAPtpvs  251 (498)
T CHL00049        172 MGGASSSILVYGFSWLYGLSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSLAPFHQWTPDVYEGSPTPVV  251 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHH
T ss_conf             99888999999999999993680009999999875344440799999999999999986225323223557447978999


Q ss_pred             CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCC-CC
Q ss_conf             33332322333211100001112233100000000012222212211100002443223321001354023331048-75
Q gi|254780866|r  245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSG-MK  323 (499)
Q Consensus       245 alls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~-~~  323 (499)
T Consensus       252 a~ls~~~K~a~~~~l~Rl~~~~~~~~~~~~~~~l~ila~lSmi~G~l~Al~Q~~iKRlLAYSSIsh~Gyillgl~~g~~~  331 (498)
T CHL00049        252 AFLSVTSKVAASALATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSN  331 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             99999999999999999999873403789999999999999999999999886430777678687768999999966458


Q ss_pred             CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHH
Q ss_conf             42210234555421023330356777764200111100235565420233201345555301024443112289999999
Q gi|254780866|r  324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF  403 (499)
Q Consensus       324 ~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~  403 (499)
T Consensus       332 ~g~~~~~~yl~~y~~~~~~~F~~i~~~~~~~g~~~i~~l~GL~~~~P~~a~~~~i~~lSLaGiPP~~GF~~K~~if~~~~  411 (498)
T CHL00049        332 DGYASMITYMLFYIFMNLGTFACIILFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGW  411 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999999999999998317204998771876469999999999999847201105999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             86599-9999999999999999999999972889876555--687889------12689999999999999772488999
Q gi|254780866|r  404 QNSNT-VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ--QLKDLS------LRERCMVYPIAVLTVFFGIYPVPIRD  474 (499)
Q Consensus       404 ~~~~~-~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~--~~~~~~------~~~~~~~~~l~~~~i~lGi~p~~~~~  474 (499)
T Consensus       412 ~~g~~~l~~i~~l~Svis~~YYlrii~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~gi~~~pi~~  491 (498)
T CHL00049        412 QAGLYFLVSIGLLTSVVSIYYYLKIIKLLMTGRNQEITPYVRNYRRSPWSLRSNNSIELSMIVCVIASTIPGISMNPIIA  491 (498)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf             86969999999999999999999999999328997667543457887400255564999999999999998825168999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780866|r  475 TFSVPL  480 (499)
Q Consensus       475 ~~~~~~  480 (499)
T Consensus       492 ~a~~~~  497 (498)
T CHL00049        492 IAQDTL  497 (498)
T ss_pred             HHHHHC
T ss_conf             998726