HHsearch alignment for GI: 254780866 and conserved domain: COG1008
>COG1008 NuoM NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion].
Probab=100.00 E-value=0 Score=705.03 Aligned_cols=486 Identities=51% Similarity=0.942 Sum_probs=465.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCEEEEE
Q ss_conf 983078999999999999998720355303579999999999999999999986308888189998631348-5405466
Q gi|254780866|r 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID-YFCSYHL 79 (499)
Q Consensus 1 m~~p~l~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 79 (499)
T Consensus 1 ~~~p~Ls~li~lPli~alli~~~~~---~~~~~r~~al~~~~~~~~l~l~~~~~Fd~s~~~~qf~e~~~Wi~~lGl~y~v 77 (497)
T COG1008 1 LSFPLLSLLIFLPLIGALLILLIPD---NGKFARWIALVVSLATLLLSLYLFAGFDISSPGFQFVESYPWIPQLGLSYHL 77 (497)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHCCCEEEE
T ss_conf 9863899999999999999976177---8725799999999999999999999667899973799975125644926999
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 52258899999999999999975201121002356789998630243026540433111234310343123553123433
Q gi|254780866|r 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 (499)
Q Consensus 80 ~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~~ 159 (499)
T Consensus 78 gvDGiS~~lvlLt~~l~~lail~sw~~i~~r~~~f~~~~L~le~~~iGvF~a~DllLFyvFwE~~LIPmy~iIgiwGg~~ 157 (497)
T COG1008 78 GVDGISLLLVLLTALLTLLAILASWREIEKRPKLFYALFLLLEGGVIGVFAALDLLLFYVFWELMLIPMYFLIGIWGGKR 157 (497)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 65078799999999999999999626666608899999999999999999998899999999999999999754206875
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2321000113554455677666554432100--01003443210133037899998541034445540002320101000
Q gi|254780866|r 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK--TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 (499)
Q Consensus 160 ~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~g--s~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~ 237 (499)
T Consensus 158 R~yAa~KFflYT~~gsl~mLla~~~~~~~~g~~TFd~~~l~~~~-~~~~~q~~L~~~f~iaFaVK~P~~P~HTWLPDAh~ 236 (497)
T COG1008 158 RIYAATKFFLYTLLGSLFMLLAFLYLYFLTGSPTFDILELLALN-LPLGVQTLLFLGFLIAFAVKMPLFPLHTWLPDAHV 236 (497)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC
T ss_conf 14889999999999899999999999985699721079998446-77579999999999999840687653056872420
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 22223443333232233321110000111223310000000001222221221110000244322332100135402333
Q gi|254780866|r 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 (499)
Q Consensus 238 ~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~ 317 (499)
T Consensus 237 eApt~gSViLaGiLlKmG~YGllRf~L~lfP~as~~fap~l~~L~visIiY~al~A~~Q~diKrliAYSSiSHMGfV~lg 316 (497)
T COG1008 237 EAPTAGSVILAGILLKMGGYGLLRFSLPLFPDASAYFAPLLVALGVISIIYGALVAFAQTDIKRLIAYSSISHMGFVTLG 316 (497)
T ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 38970789999999972226726623003876378999999999999999999999999868999999826687899999
Q ss_pred HCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHH
Q ss_conf 10487542210234555421023330356777764200111100235565420233201345555301024443112289
Q gi|254780866|r 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 (499)
Q Consensus 318 l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~ 397 (499)
T Consensus 317 ifs~~~~g~~GAv~QM~sHGlisa~LFl~vG~iy~r~hTr~i~~~GGl~~~mP~~aa~~~~~~mAs~glPG~sgFvgEFl 396 (497)
T COG1008 317 IFSFNELGVSGAVFQMLSHGLISAALFLLVGVLYERTHTRDIADLGGLANKMPKLAALFMLFAMASLGLPGTSGFVGEFL 396 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 99815888879999999813899999999999998624246887477876475999999999999668986301999899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986599999999999999999999999997288987655568788912689999999999999772488999999
Q gi|254780866|r 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 (499)
Q Consensus 398 i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~~~~~ 477 (499)
T Consensus 397 il~G~f~~~~~~~~la~~g~iltA~Y~L~~~~rv~fG~~~~~~~~~~~dl~~rE~~~~~~L~~~ii~lGvyP~~~~~~~~ 476 (497)
T COG1008 397 ILLGSFQVFPWVAFLAAFGLILTAVYMLWMYQRVFFGPLKEGSLAELPDLNGREVFILAPLVVLILFLGVYPNPILDIIQ 476 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99523156299999999999999999999999997487774313424574386999999999999998178689998879
Q ss_pred HHHHHHHHHCCCH
Q ss_conf 9999998520200
Q gi|254780866|r 478 VPLSSIIENYTLK 490 (499)
Q Consensus 478 ~~~~~l~~~~~~~ 490 (499)
T Consensus 477 ~~~~~l~~~~~~~ 489 (497)
T COG1008 477 PAVVNLLSQVAQS 489 (497)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999987540