HHsearch alignment for GI: 254780866 and conserved domain: COG1009
>COG1009 NuoL NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion / Inorganic ion transport and metabolism].
Probab=100.00 E-value=0 Score=615.16 Aligned_cols=458 Identities=27% Similarity=0.469 Sum_probs=397.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC-EEEEEEEEHHH
Q ss_conf 99999999999999872035530357999999999999999999998630888818999863134854-05466522588
Q gi|254780866|r 7 SIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGIS 85 (499)
Q Consensus 7 ~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~iD~ls 85 (499)
T Consensus 2 ~l~~~lPli~~li~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~---~~~~~W~~~~~~~~~~~iD~Ls 76 (606)
T COG1009 2 LLIILLPLIGALIALLLGR--TGRRLAAWLALLAPLVSLLLSALILFIVLAGPVL---VTLYTWLPSGGLNFGLRIDGLS 76 (606)
T ss_pred CHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE---EEEEEEEEECCCEEEEEECHHH
T ss_conf 0799999999999998443--0244305888999999999999999998059841---5888866507831689975678
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCC-CCCC
Q ss_conf 99999999999999975201121--00235678999863024302654043311123431034312355312343-3232
Q gi|254780866|r 86 ILLVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIY 162 (499)
Q Consensus 86 ~~f~~l~~~i~~l~~~ys~~~~~--~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~-~~~~ 162 (499)
T Consensus 77 ~lm~~lVt~vg~LI~iYsi~YM~~d~~~~RFfa~l~lF~~sMl~lVlSdNll~l~~~WE~~gl~SyLLIGfw~~~~~a~~ 156 (606)
T COG1009 77 LLMALLVTGVGFLIHLYSIGYMSHDPGLGRFFAYLLLFTGSMLGLVLSDNLLLLFVFWELTGLASYLLIGFWYSRPSARR 156 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 99999999999999999799824599857099999999999999998285999999999999998872000269853669
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHH---CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1000113554455677666554432100-01003443210---1330378999985410344455400023201010002
Q gi|254780866|r 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKK-TSSIIDLYAMS---KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 (499)
Q Consensus 163 aa~ky~i~~~~~s~~lL~g~~~l~~~~g-s~~~~~~~~~~---~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ 238 (499)
T Consensus 157 aA~kAflvtrvGdl~ll~gi~~L~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~lll~~Ga~~KSAQfPfH~WLpdA-Me 235 (606)
T COG1009 157 AARKAFLVTRVGDLGLLLGIILLYLLTGTTLLSEELFAAALFADISPPLLTLILLLLLLGAFGKSAQFPFHTWLPDA-ME 235 (606)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HC
T ss_conf 99887430112689999999999999576301788862110112111289999999999863663306037655366-44
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 222344333-3232233321110000111223310000000001222221221110000244322332100135402333
Q gi|254780866|r 239 APTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 (499)
Q Consensus 239 ap~~~sall-s~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~ 317 (499)
T Consensus 236 gPTPVSAliHaATMV~AGvyLvaR~~-pif~~-sp~~~~~v~~vG~iTal~~a~~al~Q~DiKriLAYSTiSQLG~m~~a 313 (606)
T COG1009 236 GPTPVSALLHAATMVKAGVYLLARLS-PLFAL-SPEALWLVILVGAVTALLAALIALVQNDIKRILAYSTISQLGYMFVA 313 (606)
T ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHH-HHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89849999998688971625796887-87535-78999999999999999999999999999999999889999999999
Q ss_pred HCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHH
Q ss_conf 10487542210234555421023330356777764200111100235565420233201345555301024443112289
Q gi|254780866|r 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 (499)
Q Consensus 318 l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~ 397 (499)
T Consensus 314 ~Glg~-~a~~aAifHL~tHA~FKA~LFL~aG~vih~~~trdi~kmggL~k~mPit~~~~~ig~lalaGvpPf~GF~SK~~ 392 (606)
T COG1009 314 LGLGS-LAYEAAIFHLVTHAFFKALLFLSAGSVIHATGTRDIRKLGGLRKKMPITFVAFLIGALALAGVPPFAGFFSKDM 392 (606)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHCHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 84427-79999999999999999999984150388716540887416787663999999999999817873206999999
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 999999865----99999999999999999999999997288987655-5687889126899999999999997-72488
Q gi|254780866|r 398 VIMSVFQNS----NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV-QQLKDLSLRERCMVYPIAVLTVFFG-IYPVP 471 (499)
Q Consensus 398 i~~~~~~~~----~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~lG-i~p~~ 471 (499)
T Consensus 393 i~~~~~~~~~~~~~~~~~~~~i~~~~T~~ys~r~~~~~F~g~~~~~~~~~~~he~p~~m~lp~~iL~~~s~~~G~~~~~~ 472 (606)
T COG1009 393 ILEAALAASHLSGGLLLLLALIGALLTAFYSFRLIFLVFFGKPREPEELPHAHEAPWVMLLPLVVLAILSLILGLLILAP 472 (606)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999972543333899999999999999999999951478998744466778898104598999999999999987656
Q ss_pred HH
Q ss_conf 99
Q gi|254780866|r 472 IR 473 (499)
Q Consensus 472 ~~ 473 (499)
T Consensus 473 ~~ 474 (606)
T COG1009 473 FL 474 (606)
T ss_pred HH
T ss_conf 53