HHsearch alignment for GI: 254780866 and conserved domain: COG1009

>COG1009 NuoL NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion / Inorganic ion transport and metabolism].
Probab=100.00  E-value=0  Score=615.16  Aligned_cols=458  Identities=27%  Similarity=0.469  Sum_probs=397.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC-EEEEEEEEHHH
Q ss_conf             99999999999999872035530357999999999999999999998630888818999863134854-05466522588
Q gi|254780866|r    7 SIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGIS   85 (499)
Q Consensus         7 ~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~iD~ls   85 (499)
T Consensus         2 ~l~~~lPli~~li~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~---~~~~~W~~~~~~~~~~~iD~Ls   76 (606)
T COG1009           2 LLIILLPLIGALIALLLGR--TGRRLAAWLALLAPLVSLLLSALILFIVLAGPVL---VTLYTWLPSGGLNFGLRIDGLS   76 (606)
T ss_pred             CHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE---EEEEEEEEECCCEEEEEECHHH
T ss_conf             0799999999999998443--0244305888999999999999999998059841---5888866507831689975678


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCC-CCCC
Q ss_conf             99999999999999975201121--00235678999863024302654043311123431034312355312343-3232
Q gi|254780866|r   86 ILLVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIY  162 (499)
Q Consensus        86 ~~f~~l~~~i~~l~~~ys~~~~~--~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~-~~~~  162 (499)
T Consensus        77 ~lm~~lVt~vg~LI~iYsi~YM~~d~~~~RFfa~l~lF~~sMl~lVlSdNll~l~~~WE~~gl~SyLLIGfw~~~~~a~~  156 (606)
T COG1009          77 LLMALLVTGVGFLIHLYSIGYMSHDPGLGRFFAYLLLFTGSMLGLVLSDNLLLLFVFWELTGLASYLLIGFWYSRPSARR  156 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf             99999999999999999799824599857099999999999999998285999999999999998872000269853669


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHH---CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1000113554455677666554432100-01003443210---1330378999985410344455400023201010002
Q gi|254780866|r  163 AAYKFFLYTFFGSIFMLFAIVVMCWEKK-TSSIIDLYAMS---KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ  238 (499)
Q Consensus       163 aa~ky~i~~~~~s~~lL~g~~~l~~~~g-s~~~~~~~~~~---~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~  238 (499)
T Consensus       157 aA~kAflvtrvGdl~ll~gi~~L~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~lll~~Ga~~KSAQfPfH~WLpdA-Me  235 (606)
T COG1009         157 AARKAFLVTRVGDLGLLLGIILLYLLTGTTLLSEELFAAALFADISPPLLTLILLLLLLGAFGKSAQFPFHTWLPDA-ME  235 (606)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HC
T ss_conf             99887430112689999999999999576301788862110112111289999999999863663306037655366-44


Q ss_pred             CCCCCCCCC-CCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf             222344333-3232233321110000111223310000000001222221221110000244322332100135402333
Q gi|254780866|r  239 APTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG  317 (499)
Q Consensus       239 ap~~~sall-s~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~  317 (499)
T Consensus       236 gPTPVSAliHaATMV~AGvyLvaR~~-pif~~-sp~~~~~v~~vG~iTal~~a~~al~Q~DiKriLAYSTiSQLG~m~~a  313 (606)
T COG1009         236 GPTPVSALLHAATMVKAGVYLLARLS-PLFAL-SPEALWLVILVGAVTALLAALIALVQNDIKRILAYSTISQLGYMFVA  313 (606)
T ss_pred             CCCHHHHHHHHHHHHHCCHHHHHHHH-HHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89849999998688971625796887-87535-78999999999999999999999999999999999889999999999


Q ss_pred             HCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHH
Q ss_conf             10487542210234555421023330356777764200111100235565420233201345555301024443112289
Q gi|254780866|r  318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL  397 (499)
Q Consensus       318 l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~  397 (499)
T Consensus       314 ~Glg~-~a~~aAifHL~tHA~FKA~LFL~aG~vih~~~trdi~kmggL~k~mPit~~~~~ig~lalaGvpPf~GF~SK~~  392 (606)
T COG1009         314 LGLGS-LAYEAAIFHLVTHAFFKALLFLSAGSVIHATGTRDIRKLGGLRKKMPITFVAFLIGALALAGVPPFAGFFSKDM  392 (606)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHCHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             84427-79999999999999999999984150388716540887416787663999999999999817873206999999


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf             999999865----99999999999999999999999997288987655-5687889126899999999999997-72488
Q gi|254780866|r  398 VIMSVFQNS----NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV-QQLKDLSLRERCMVYPIAVLTVFFG-IYPVP  471 (499)
Q Consensus       398 i~~~~~~~~----~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~lG-i~p~~  471 (499)
T Consensus       393 i~~~~~~~~~~~~~~~~~~~~i~~~~T~~ys~r~~~~~F~g~~~~~~~~~~~he~p~~m~lp~~iL~~~s~~~G~~~~~~  472 (606)
T COG1009         393 ILEAALAASHLSGGLLLLLALIGALLTAFYSFRLIFLVFFGKPREPEELPHAHEAPWVMLLPLVVLAILSLILGLLILAP  472 (606)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999972543333899999999999999999999951478998744466778898104598999999999999987656


Q ss_pred             HH
Q ss_conf             99
Q gi|254780866|r  472 IR  473 (499)
Q Consensus       472 ~~  473 (499)
T Consensus       473 ~~  474 (606)
T COG1009         473 FL  474 (606)
T ss_pred             HH
T ss_conf             53