HHsearch alignment for GI: 254780866 and conserved domain: MTH00004
>MTH00004 ND5 NADH dehydrogenase subunit 5; Validated.
Probab=100.00 E-value=0 Score=551.70 Aligned_cols=397 Identities=21% Similarity=0.345 Sum_probs=347.5
Q ss_pred EEEEECC---CCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 9863134---8540546652258899999999999999975201121--0023567899986302430265404331112
Q gi|254780866|r 65 IEYYHWI---DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 (499)
Q Consensus 65 ~~~~~~~---~~~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~--~~~~~f~~llll~~~~~~~~~~s~dl~~l~v 139 (499)
T Consensus 63 ~~~~~w~~~~~~~i~~~f~~D~lS~~f~~vv~~Is~~I~~yS~~YM~~d~~~~rF~~~l~lF~~sMl~lV~s~Nl~~lfi 142 (604)
T MTH00004 63 TTNWEWKFTPNFNIPISFKLDQYSLMFLPIALFVTWSILEFATWYMASDPHITKFFKYLLIFLIAMLILTTANNMFQLFI 142 (604)
T ss_pred EEEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99736102087160677632863999999999999999999689707899916899999999999999999730999999
Q ss_pred HHHHCCCCCEEEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 3431034312355312343-323210001135544556776665544321000100344321013303789999854103
Q gi|254780866|r 140 FFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS 218 (499)
Q Consensus 140 ~~El~~l~~~~Li~~~~~~-~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g 218 (499)
T Consensus 143 gWEgvGl~SylLI~~~~~r~~a~~aa~ka~i~nRiGD~~lll~i~~l~~~~gt~~~~~~~~~~~----~~~l~~l~lila 218 (604)
T MTH00004 143 GWEGVGIMSFLLIGWWHGRAEANTAALQAIIYNRIGDIGLILSMAWLAMTLNTWEIQQLFSQTQ----TPLLPLLGLILA 218 (604)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHCCC----HHHHHHHHHHHH
T ss_conf 9999999999888450697688999999999983126999999999999948843999883640----589999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEC
Q ss_conf 444554000232010100022223443333-2322333211100001112233100000000012222212211100002
Q gi|254780866|r 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLA-GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 (499)
Q Consensus 219 ~~~K~~~~PfH~WlP~~y~~ap~~~salls-~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~ 297 (499)
T Consensus 219 a~gKSAQfPfh~WLP~A-MeaPTPVSALlHssTmV~AGVylliR~~-~l~~~-~~~~~~~~l~~G~lT~l~aa~~Al~Q~ 295 (604)
T MTH00004 219 ATGKSAQFGLHPWLPAA-MEGPTPVSALLHSSTMVVAGIFLLIRTH-PILQN-NQTALTICLCLGALTTLFAATCALTQN 295 (604)
T ss_pred HHHHCCCCCCCCCCHHH-HCCCCCHHHHHCCCHHHHHHHHHHHHHH-HHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99840427772014677-5589936766244301246799999999-99865-799999999999999999999997223
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH-HCCCCCCHHHHHHHHHHCCCCCH
Q ss_conf 44322332100135402333104875422102345554210233303567777642-00111100235565420233201
Q gi|254780866|r 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR-LHTRDIFAYGGLVHNMPRYAVVM 376 (499)
Q Consensus 298 d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~-~g~~~l~~l~Gl~~~~P~~~~~~ 376 (499)
T Consensus 296 DiKkiiAyST~SQLG~M~~~iglg~~---~lA~fHl~~HA~FKAlLFL~aGsiIH~~~~~qDir~mGgl~~~mP~t~~~~ 372 (604)
T MTH00004 296 DIKKIIAFSTSSQLGLMMVTIGLNQP---QLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITTSCL 372 (604)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHH
T ss_conf 18789998899899999999974639---999999998899999999810599970578620998679862038999999
Q ss_pred HHHHHHHCCCHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 345555301024443112289999999865--999999999999999999999999972889876555687889126899
Q gi|254780866|r 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNS--NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 (499)
Q Consensus 377 ~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~--~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 454 (499)
T Consensus 373 ~igslsL~G~PflsGFySKD~IlE~~~~s~~n~~~~~~~~~~~~lT~~Ys~Rl~~~~~~~~~~~~~~~~~~E~~~~m~~P 452 (604)
T MTH00004 373 TIGNLALMGTPFLAGFYSKDLIIETLNTSYLNAWALLLTLLATSFTATYSLRMTLLVQTGFPRTPPLTPINENNPTITNP 452 (604)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99999852677432241169999999857508999999999999999999999999980899888878878896899999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999772488
Q gi|254780866|r 455 VYPIAVLTVFFGIYPVP 471 (499)
Q Consensus 455 ~~~l~~~~i~lGi~p~~ 471 (499)
T Consensus 453 l~~La~~sI~~G~l~~~ 469 (604)
T MTH00004 453 ITRLALGSIIAGLLISS 469 (604)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999