HHsearch alignment for GI: 254780866 and conserved domain: MTH00020
>MTH00020 ND5 NADH dehydrogenase subunit 5; Reviewed.
Probab=100.00 E-value=0 Score=603.93 Aligned_cols=457 Identities=21% Similarity=0.345 Sum_probs=390.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCC---CEEEEEEEEH
Q ss_conf 9999999999999987203553035799999999999999999999863088881899986313485---4054665225
Q gi|254780866|r 7 SIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY---FCSYHLGVDG 83 (499)
Q Consensus 7 ~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~iD~ 83 (499)
T Consensus 3 lLii~~Pli~a~i~~l~gr~~-~~~~~~~i~~~~~~~s~~~s~~~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~D~ 80 (608)
T MTH00020 3 LLVLFFPLVGAVLSGLFGRKI-GEKGAGILTSSCLIISLSWSFLIFYEILLNSST-TYIKLWRWLDSDLLTVYFGLQFDG 80 (608)
T ss_pred HHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEEEECCCCCEEEEEEEHH
T ss_conf 999999999999999827766-840899999999999999999999999738981-699876521227715278775076
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCC-CC
Q ss_conf 88999999999999999752011210--0235678999863024302654043311123431034312355312343-32
Q gi|254780866|r 84 ISILLVVLTTFLTPFCILSSWKSIQE--NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ER 160 (499)
Q Consensus 84 ls~~f~~l~~~i~~l~~~ys~~~~~~--~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~-~~ 160 (499)
T Consensus 81 ls~~~~~~v~~is~lv~iYS~~Ym~~d~~~~rf~~~l~lF~~~Ml~lv~s~nl~~lfvgWE~~gl~SylLI~~~~~~~~a 160 (608)
T MTH00020 81 LVAIMLLVVTTISTLVHIFSTAYMRGDPHIPRFMSYLSLFTFLMVVLVTSDNYLQLFIGWEGVGLCSYLLINFWLTRIEA 160 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 59999999999999999999998467998128999999999999999997169999999999999998857231687689
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32100011355445567766655443210001003443210133037899998541034445540002320101000222
Q gi|254780866|r 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 (499)
Q Consensus 161 ~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap 240 (499)
T Consensus 161 ~~aa~ka~l~~rvGd~~~l~~i~~l~~~~gt~~~~~i~~~~~~~-~~~~~~~~~l~~g~~~KsAq~P~h~WLP~A-m~aP 238 (608)
T MTH00020 161 NKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSLDFSSVFNMVAPS-SDITLICLLLFIGAVGKSAQLGLHTWLPDA-MEGP 238 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HCCC
T ss_conf 99999999999865899999999999982780699999873433-258999999999999986407550204566-4589
Q ss_pred CCCCCCCC-CCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 23443333-23223332111000011122331000000000122222122111000024432233210013540233310
Q gi|254780866|r 241 TAGSVFLA-GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 (499)
Q Consensus 241 ~~~salls-~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~ 319 (499)
T Consensus 239 TPvSALlhaatmV~aGvyll~R~~-~~~~~-~~~~~~~~~~iG~~T~~~~~~~Al~Q~DiKkilAyST~SQlG~m~~~~g 316 (608)
T MTH00020 239 TPVSALIHAATMVTAGVFLLIRSS-PLFDQ-APLALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACG 316 (608)
T ss_pred CCHHHHHHHHHHHHHHHHEEEEEC-CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC
T ss_conf 970588988999974473135305-41012-7789999999999999999999997877888762033868889999850
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH-HCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHH
Q ss_conf 4875422102345554210233303567777642-001111002355654202332013455553010244431122899
Q gi|254780866|r 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR-LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 (499)
Q Consensus 320 ~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~-~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i 398 (499)
T Consensus 317 l~~---~~~a~fHl~~Ha~fKalLFl~aG~vih~~~~~qdi~~mggl~~~mP~t~~~~~i~~lal~G~P~~~GF~SKd~i 393 (608)
T MTH00020 317 LSH---YSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDIRKMGGLISFLPLTYIMFVIGSLSLMGFPYLTGFYSKDLI 393 (608)
T ss_pred CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 140---87889999999999999998435999834685038884794134839999999999998454124089879999
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999986599--99999999999999999999999728898765--55687889126899999999999997724889
Q gi|254780866|r 399 IMSVFQNSNT--VAVLASFGVVLSALYSLWLYRKVVFGVSKCEK--VQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 (499)
Q Consensus 399 ~~~~~~~~~~--~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~ 472 (499)
T Consensus 394 le~~~~~~~~~~~~~~~~~~~~lT~~y~~R~~~~~f~g~~~~~~~~~~~~hE~~~~M~~Pl~iLa~~si~~G~l~~~~ 471 (608)
T MTH00020 394 LELAFGQYYLIFAYWLGCFSALLTALYSIRLIYLTFLSNTNLKRAVFFFLHEGSWNLLLPLGILALGSIFVGYLAKEM 471 (608)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999986626999999999999999999999999999479999976555667687899999999999999999999988