HHsearch alignment for GI: 254780866 and conserved domain: MTH00044
>MTH00044 ND4 NADH dehydrogenase subunit 4; Validated.
Probab=100.00 E-value=0 Score=591.20 Aligned_cols=399 Identities=34% Similarity=0.598 Sum_probs=366.6
Q ss_pred CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCE
Q ss_conf 405466522588999999999999999752011210----0235678999863024302654043311123431034312
Q gi|254780866|r 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 (499)
Q Consensus 74 ~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~----~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~ 149 (499)
T Consensus 52 ~~~~~~~~D~lS~~lilLt~~l~~l~~laS~~~l~~~~~~~~~~f~~lll~l~~~l~~~F~s~dl~~fyiffE~~lIp~~ 131 (460)
T MTH00044 52 NLSLSLATDSISTPLIILSCWLIPISLLASINHLSNYSLLNQRTFISLIIIILTALIITFSSLELSLFYIAFETTLIPTL 131 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56599957676899999999999999999799986286421889999999999999999998389999999999999999
Q ss_pred EEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH---HHCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 35531234-332321000113554455677666554432100010034432---10133037899998541034445540
Q gi|254780866|r 150 VIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAIKIPM 225 (499)
Q Consensus 150 ~Li~~~~~-~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~---~~~~~~~~~~~~~~ll~~g~~~K~~~ 225 (499)
T Consensus 132 ~LI~~wG~~~~r~~A~~~~~~yt~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~l~~~laF~vK~pl 211 (460)
T MTH00044 132 ILISRWGAQKERYQASLYFLFYTLFGSLPLLISLIAIYVSSSSLSIPSVNLNWNFTSSPTSLTSIWWLFCFLAFLVKMPI 211 (460)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988399879999999999999998999999999999984875199999998875341669999999999999997368
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf 00232010100022223443333232233321110000111223310000000001222221221110000244322332
Q gi|254780866|r 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 (499)
Q Consensus 226 ~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAy 305 (499)
T Consensus 212 ~P~H~WLP~Ah~eAP~~~SmlLAgvllKlG~YgliR~~~~~~~~~~~~~~~~l~~l~~~g~~~~s~~al~Q~DlKrliAY 291 (460)
T MTH00044 212 YGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLISLFSTPSLNNLSFPLITFCIWGALITSIICLRQTDLKALIAY 291 (460)
T ss_pred HHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 76012372643539806999999999999999999999986305689999999999999999999999986475299999
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf 10013540233310487542210234555421023330356777764200111100235565420233201345555301
Q gi|254780866|r 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 (499)
Q Consensus 306 Ssi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G 385 (499)
T Consensus 292 SSVsHmG~v~~gi~~~~~~g~~Gal~~miaHgl~ss~LF~lag~~y~rt~tr~i~~~~Gl~~~~P~~~~~~~i~~la~~g 371 (460)
T MTH00044 292 SSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANTLYERSGTRTLAITRGLKLITPLLTLWWLITCAANLG 371 (460)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 33998999999999705889999999999999999999999889997038673787388165637999999999999751
Q ss_pred CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 02444311228999999986599999999999999999999999997288987655568788912689999999999999
Q gi|254780866|r 386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 (499)
Q Consensus 386 ~Pp~~GF~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~l 465 (499)
T Consensus 372 lPp~~gF~gE~~i~~s~~~~~~~~~~~~~~~~~lta~Y~L~~~~~~~~G~~~~-~~~~~~~~~~rE~~~l~~h~~p~~~l 450 (460)
T MTH00044 372 LPPLPNLIGELLIISSIIDWNILSFPIIGLATVFGAIYSLLIYQLTNSGTFPS-FISNISPITSREHLLIFLHLLPLILI 450 (460)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 64346099999999999999899999999999999999999999986799810-14338998578999999999999999
Q ss_pred HHHHHHHH
Q ss_conf 77248899
Q gi|254780866|r 466 GIYPVPIR 473 (499)
Q Consensus 466 Gi~p~~~~ 473 (499)
T Consensus 451 ~~~P~~i~ 458 (460)
T MTH00044 451 IINPSLIL 458 (460)
T ss_pred HHCHHHHH
T ss_conf 97868886