HHsearch alignment for GI: 254780866 and conserved domain: MTH00044

>MTH00044 ND4 NADH dehydrogenase subunit 4; Validated.
Probab=100.00  E-value=0  Score=591.20  Aligned_cols=399  Identities=34%  Similarity=0.598  Sum_probs=366.6

Q ss_pred             CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCE
Q ss_conf             405466522588999999999999999752011210----0235678999863024302654043311123431034312
Q gi|254780866|r   74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF  149 (499)
Q Consensus        74 ~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~----~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~  149 (499)
T Consensus        52 ~~~~~~~~D~lS~~lilLt~~l~~l~~laS~~~l~~~~~~~~~~f~~lll~l~~~l~~~F~s~dl~~fyiffE~~lIp~~  131 (460)
T MTH00044         52 NLSLSLATDSISTPLIILSCWLIPISLLASINHLSNYSLLNQRTFISLIIIILTALIITFSSLELSLFYIAFETTLIPTL  131 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             56599957676899999999999999999799986286421889999999999999999998389999999999999999


Q ss_pred             EEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH---HHCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             35531234-332321000113554455677666554432100010034432---10133037899998541034445540
Q gi|254780866|r  150 VIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAIKIPM  225 (499)
Q Consensus       150 ~Li~~~~~-~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~---~~~~~~~~~~~~~~ll~~g~~~K~~~  225 (499)
T Consensus       132 ~LI~~wG~~~~r~~A~~~~~~yt~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~l~~~laF~vK~pl  211 (460)
T MTH00044        132 ILISRWGAQKERYQASLYFLFYTLFGSLPLLISLIAIYVSSSSLSIPSVNLNWNFTSSPTSLTSIWWLFCFLAFLVKMPI  211 (460)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988399879999999999999998999999999999984875199999998875341669999999999999997368


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf             00232010100022223443333232233321110000111223310000000001222221221110000244322332
Q gi|254780866|r  226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY  305 (499)
Q Consensus       226 ~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAy  305 (499)
T Consensus       212 ~P~H~WLP~Ah~eAP~~~SmlLAgvllKlG~YgliR~~~~~~~~~~~~~~~~l~~l~~~g~~~~s~~al~Q~DlKrliAY  291 (460)
T MTH00044        212 YGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLISLFSTPSLNNLSFPLITFCIWGALITSIICLRQTDLKALIAY  291 (460)
T ss_pred             HHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             76012372643539806999999999999999999999986305689999999999999999999999986475299999


Q ss_pred             CCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf             10013540233310487542210234555421023330356777764200111100235565420233201345555301
Q gi|254780866|r  306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG  385 (499)
Q Consensus       306 Ssi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G  385 (499)
T Consensus       292 SSVsHmG~v~~gi~~~~~~g~~Gal~~miaHgl~ss~LF~lag~~y~rt~tr~i~~~~Gl~~~~P~~~~~~~i~~la~~g  371 (460)
T MTH00044        292 SSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANTLYERSGTRTLAITRGLKLITPLLTLWWLITCAANLG  371 (460)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             33998999999999705889999999999999999999999889997038673787388165637999999999999751


Q ss_pred             CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             02444311228999999986599999999999999999999999997288987655568788912689999999999999
Q gi|254780866|r  386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF  465 (499)
Q Consensus       386 ~Pp~~GF~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~l  465 (499)
T Consensus       372 lPp~~gF~gE~~i~~s~~~~~~~~~~~~~~~~~lta~Y~L~~~~~~~~G~~~~-~~~~~~~~~~rE~~~l~~h~~p~~~l  450 (460)
T MTH00044        372 LPPLPNLIGELLIISSIIDWNILSFPIIGLATVFGAIYSLLIYQLTNSGTFPS-FISNISPITSREHLLIFLHLLPLILI  450 (460)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             64346099999999999999899999999999999999999999986799810-14338998578999999999999999


Q ss_pred             HHHHHHHH
Q ss_conf             77248899
Q gi|254780866|r  466 GIYPVPIR  473 (499)
Q Consensus       466 Gi~p~~~~  473 (499)
T Consensus       451 ~~~P~~i~  458 (460)
T MTH00044        451 IINPSLIL  458 (460)
T ss_pred             HHCHHHHH
T ss_conf             97868886