HHsearch alignment for GI: 254780866 and conserved domain: MTH00068
>MTH00068 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=573.62 Aligned_cols=399 Identities=33% Similarity=0.570 Sum_probs=363.2
Q ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEE
Q ss_conf 05466522588999999999999999752011210----02356789998630243026540433111234310343123
Q gi|254780866|r 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 (499)
Q Consensus 75 ~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~----~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~ 150 (499)
T Consensus 52 ~~~~~gvD~lS~~li~Lt~~l~~l~ilaS~~~~~~~~~~r~~~f~~l~l~l~~~l~~~F~s~dl~lFyiffE~~LIp~~~ 131 (458)
T MTH00068 52 TNKYLGIDQISSPLLILTCWLLPLMILASQNHLKNNPLNRQRMYISMLIILQLTLILAFSATELILFYIAFEATLIPTLI 131 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 72888017868999999999999999995799841852038899999999999999999996899999999999999999
Q ss_pred EEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 5531234-332321000113554455677666554432100010034432101--3303789999854103444554000
Q gi|254780866|r 151 IIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFP 227 (499)
Q Consensus 151 Li~~~~~-~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~--~~~~~~~~~~~ll~~g~~~K~~~~P 227 (499)
T Consensus 132 LI~~wG~~~~r~~A~~~~~~yT~~gSl~lL~~i~~ly~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~llaF~vK~p~~p 211 (458)
T MTH00068 132 IITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLILQNSLGSLSLTLLELMPPMQLMTYTNKIWWLACLLAFMVKMPLYG 211 (458)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99986997689999999999999999999999999999759973999999887754367999999999999999767888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCC
Q ss_conf 23201010002222344333323223332111000011122331000000000122222122111000024432233210
Q gi|254780866|r 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 (499)
Q Consensus 228 fH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySs 307 (499)
T Consensus 212 ~H~WLP~Ah~eAP~~~S~ilagvllK~G~YgliR~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~al~Q~DlKrliAYSS 290 (458)
T MTH00068 212 LHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISI-MLTPLSKELSYPFIILALWGVLMTSLICMRQTDLKSLIAYSS 290 (458)
T ss_pred CCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 8866616544598078999999999998999999975-144258999999999999999999999998236669999987
Q ss_pred CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCH
Q ss_conf 01354023331048754221023455542102333035677776420011110023556542023320134555530102
Q gi|254780866|r 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 (499)
Q Consensus 308 i~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~P 387 (499)
T Consensus 291 vshmG~i~~gi~~~~~~g~~Gal~~mi~Hgl~ss~LF~l~g~~y~r~~tr~i~~~~Gl~~~~P~~~~~~~i~~la~~g~P 370 (458)
T MTH00068 291 VSHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLINLSNMALP 370 (458)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999973768899999999999999999999999999704862488848955554899999999999971788
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 44431122899999998659999999999999999999999999728898765556878891268999999999999977
Q gi|254780866|r 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 (499)
Q Consensus 388 p~~GF~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi 467 (499)
T Consensus 371 p~~gF~gE~~il~~~~~~~~~~~~~~~~~~~lsa~YsL~l~~~~~~G~~~~-~~~~~~~~~~rE~~ll~lh~~pl~~l~~ 449 (458)
T MTH00068 371 PSPNLWGELTIMVSLFNWSNWTILITGLGTLITAAYTLYMFLMTQRGPLPN-HLKTLFPTYTREHLLLALHILPMLLLIL 449 (458)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 756489999999999998499999999999999999999999997699815-2015899718999999999999999998
Q ss_pred HHHHHHHH
Q ss_conf 24889999
Q gi|254780866|r 468 YPVPIRDT 475 (499)
Q Consensus 468 ~p~~~~~~ 475 (499)
T Consensus 450 ~p~li~~~ 457 (458)
T MTH00068 450 KPELISGM 457 (458)
T ss_pred HHHHHHCC
T ss_conf 39998334