HHsearch alignment for GI: 254780866 and conserved domain: MTH00094
>MTH00094 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=455.74 Aligned_cols=349 Identities=27% Similarity=0.461 Sum_probs=305.9
Q ss_pred EEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEEC
Q ss_conf 54665225889999999999999997520112100235678999863024302654043311123431034312355312
Q gi|254780866|r 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 (499)
Q Consensus 76 ~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~ 155 (499)
T Consensus 37 ~~~f~~d~~s~~l~il~~~~~~~~~~~s~-----~~~~~~~~~~~l~~~li~~F~s~nl~lFYiffE~sLIP~~~LI~~w 111 (409)
T MTH00094 37 GLFFFFDSFSFLLLIFMSLFILGLVLMSE-----KNYNLLILSNLLVFICVFFFVSSNLWMLYLFFELSMFPILIMILGY 111 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 48999878999999999999999999983-----3049999999999999999999899999999999999999999960
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 34-33232100011355445567766655443210001003443210133037899998541034445540002320101
Q gi|254780866|r 156 GG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 (499)
Q Consensus 156 ~~-~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~ 234 (499)
T Consensus 112 G~q~eR~~A~~y~l~YTl~~SlplL~~i~~~~~~~~~~~~~---------~~~~~~~~~~l~laFlvK~Plfp~H~WLP~ 182 (409)
T MTH00094 112 GSQIEKINSSYYLIFYAAFFSFPFLFVYFKNFFFLNFVYFD---------FFLSWEMKFILSLMFMVKFPVYFLHLWLPK 182 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 98299999999999999999999999999999997423167---------899999999999999999636313123736
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHH
Q ss_conf 00022223443333232233321110000111223310000000001222221221110000244322332100135402
Q gi|254780866|r 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 (499)
Q Consensus 235 ~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i 314 (499)
T Consensus 183 AHvEAP~~gSmiLAGvLlKlG~YGl~R~~~~~~----~~~~~~~~~l~l~g~v~~sl~~l~Q~DlK~liAYSSVsHMg~v 258 (409)
T MTH00094 183 AHVEAPTTASMLLAGLLLKLGTAGFLRILGSLS----FVHNNYWILLSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFL 258 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 551088389999999999898999999999887----9899999999999999999999987748899998139899999
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCC
Q ss_conf 33310487542210234555421023330356777764200111100235565420233201345555301024443112
Q gi|254780866|r 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 (499)
Q Consensus 315 ~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~ 394 (499)
T Consensus 259 ~~gl~~~~~~g~~Gal~~mi~HGl~ss~LF~l~g~~y~r~~sR~i~~~~Gl~~~~P~~~~~~~l~~l~n~g~Pp~~~F~s 338 (409)
T MTH00094 259 LLSLVFMSMSGKLSGLLLMLAHGYTSTLMFYFIGEFYHISKSRLIYFMNSFFNSSMIFSILFSLVFLSNSGIPPSLSFFS 338 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999960899999899999887777799998858998236555998699787869999999999999855897450999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 289999999865999999999999999999999999972889876555
Q gi|254780866|r 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ 442 (499)
Q Consensus 395 k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~ 442 (499)
T Consensus 339 E~lii~s~~~~~~~~~~~~~~~~~lsa~Ysl~ly~~~~~Gk~~s~~~~ 386 (409)
T MTH00094 339 EFLSISNFFSMNKFSFFFIFFYFIVSFYYSLFLITSSLMGKKFSNFNK 386 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999999999998999999999999999999999999666877331104