HHsearch alignment for GI: 254780866 and conserved domain: MTH00108
>MTH00108 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00 E-value=0 Score=515.38 Aligned_cols=400 Identities=21% Similarity=0.353 Sum_probs=347.3
Q ss_pred EEEEECC---CCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 9863134---8540546652258899999999999999975201121--0023567899986302430265404331112
Q gi|254780866|r 65 IEYYHWI---DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 (499)
Q Consensus 65 ~~~~~~~---~~~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~--~~~~~f~~llll~~~~~~~~~~s~dl~~l~v 139 (499)
T Consensus 63 ~~~~~w~~~~~~~~~~sf~~D~~S~~f~~~vl~Is~~V~~yS~~YM~~d~~~~rF~~~l~lF~~sMl~LV~s~Nl~~lfi 142 (602)
T MTH00108 63 ISNWHWMTIQTLKLSLSFKLDYFSMIFIPVALFVTWSIMEFSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFI 142 (602)
T ss_pred EEEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 77546137777252888743743899999999999999999799807998936599999999999999999721999999
Q ss_pred HHHHCCCCCEEEEEECC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 34310343123553123-43323210001135544556776665544321000100344321013303789999854103
Q gi|254780866|r 140 FFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS 218 (499)
Q Consensus 140 ~~El~~l~~~~Li~~~~-~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g 218 (499)
T Consensus 143 GWEgvGl~SylLI~~w~~r~~a~~aa~~a~l~nRiGD~~lll~i~~l~~~~~s~~~~~i~~~~~~~---~~~~l~~llla 219 (602)
T MTH00108 143 GWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIFMLNPNN---LNLPLMGLLLA 219 (602)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCH---HHHHHHHHHHH
T ss_conf 999999999999999639867899999999999156899999999999981662299999735523---79999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEC
Q ss_conf 444554000232010100022223443333-2322333211100001112233100000000012222212211100002
Q gi|254780866|r 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLA-GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 (499)
Q Consensus 219 ~~~K~~~~PfH~WlP~~y~~ap~~~salls-~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~ 297 (499)
T Consensus 220 a~~KSAQfPfh~WLP~A-MegPTPVSALlHSsTmV~AGVyLliR~~-pl~~-~~~~~~~~~l~lG~~T~l~aa~~Al~q~ 296 (602)
T MTH00108 220 ATGKSAQFGLHPWLPSA-MEGPTPVSALLHSSTMVVAGVFLLIRFH-PLME-NNKTIQTLTLCLGAITTLFTAICALTQN 296 (602)
T ss_pred HHHHHHHCCCHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99865207453420676-3589909999987689986099999998-8874-1799999999999999999999998523
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHCCCCCH
Q ss_conf 4432233210013540233310487542210234555421023330356777764200-111100235565420233201
Q gi|254780866|r 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH-TRDIFAYGGLVHNMPRYAVVM 376 (499)
Q Consensus 298 d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g-~~~l~~l~Gl~~~~P~~~~~~ 376 (499)
T Consensus 297 DiKkiiAyST~SQLGlMm~~iglg~~---~lA~fHL~tHA~FKAlLFL~aG~iIH~~~~~QDir~mGgl~~~~P~t~~~~ 373 (602)
T MTH00108 297 DIKKIVAFSTSSQLGLMMVTIGINQP---HLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTAL 373 (602)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHH
T ss_conf 18789999889899999999855738---899999999999999999823099982588541898759752047999999
Q ss_pred HHHHHHHCCCHHHHHHCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 34555530102444311228999999986--5999999999999999999999999972889876555687889126899
Q gi|254780866|r 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQN--SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 (499)
Q Consensus 377 ~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~--~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 454 (499)
T Consensus 374 ~i~slaL~G~PflsGFySKD~IlE~~~~s~~n~~~~~l~~~~~~lT~~YS~Rl~~~~~~~~~~~~~~~~~~e~~~~~~~p 453 (602)
T MTH00108 374 IIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITINENNPLLINP 453 (602)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99999984763210787689999999865628999999999999999999999999970899888878767796789999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999977248899
Q gi|254780866|r 455 VYPIAVLTVFFGIYPVPIR 473 (499)
Q Consensus 455 ~~~l~~~~i~lGi~p~~~~ 473 (499)
T Consensus 454 l~~L~~gsI~~G~l~s~~i 472 (602)
T MTH00108 454 IKRLLLGSIFAGFLISNNI 472 (602)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999987