HHsearch alignment for GI: 254780866 and conserved domain: MTH00124

>MTH00124 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=567.06  Aligned_cols=398  Identities=34%  Similarity=0.584  Sum_probs=361.6

Q ss_pred             EEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEE
Q ss_conf             05466522588999999999999999752011210----02356789998630243026540433111234310343123
Q gi|254780866|r   75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV  150 (499)
Q Consensus        75 ~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~----~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~  150 (499)
T Consensus        52 ~~~~~g~D~lS~~li~Lt~~i~~l~il~S~~~~~~~~~~~~~~F~~~~l~l~~~l~~~F~s~dl~~FyiffE~~lIp~~l  131 (457)
T MTH00124         52 SNQWLGIDQISAPLLVLSCWLLPLMIMASQNHLQHEPTQRKRTFITTLILLQPFLILAFSATELMLFYIMFEATLIPTLI  131 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87999258878999999999999999998799852740028899999999999999999995899999999999999999


Q ss_pred             EEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH--CCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             5531234-33232100011355445567766655443210001003443210--13303789999854103444554000
Q gi|254780866|r  151 IIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFP  227 (499)
Q Consensus       151 Li~~~~~-~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~--~~~~~~~~~~~~ll~~g~~~K~~~~P  227 (499)
T Consensus       132 LI~~wG~~~er~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gt~~~~~~~~~~~~~~~~~~~~~~~l~~~laF~vK~p~fp  211 (457)
T MTH00124        132 LITRWGNQPERLNAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLALLTAFMVKMPLYG  211 (457)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99886895899999999999999989999999999999769862999997624212417999999999999998668998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCC
Q ss_conf             23201010002222344333323223332111000011122331000000000122222122111000024432233210
Q gi|254780866|r  228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS  307 (499)
Q Consensus       228 fH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySs  307 (499)
T Consensus       212 ~H~WLP~Ah~eAP~~gSmiLAgvllKlG~YgliR~~~~-~~~~~~~~~~~~i~l~l~g~i~~sl~al~Q~DlKrliAYSS  290 (457)
T MTH00124        212 LHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITLL-LPPLSNTLHYPFLTLALWGALMTSSICLRQTDLKSLIAYSS  290 (457)
T ss_pred             CCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88762056433870799999999999999999999998-51568999999999999999999999976101999999989


Q ss_pred             CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCH
Q ss_conf             01354023331048754221023455542102333035677776420011110023556542023320134555530102
Q gi|254780866|r  308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP  387 (499)
Q Consensus       308 i~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~P  387 (499)
T Consensus       291 VsHMG~v~~gi~~~~~~g~~Ga~~~miaHgl~ss~LF~lag~iy~r~~tr~i~~~~Gl~~~~P~~~~~~~i~~la~~g~P  370 (457)
T MTH00124        291 VSHMGLVIAAILIQTQWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALP  370 (457)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999967950068999999989999999999999999961871599849905557889999999999975064


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             44431122899999998659999999999999999999999999728898765556878891268999999999999977
Q gi|254780866|r  388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI  467 (499)
Q Consensus       388 p~~GF~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi  467 (499)
T Consensus       371 p~~gF~gE~lil~~~~~~~~~~~~~~~~~~~lsa~YsL~l~~~~~~G~~~~-~~~~~~~~~~re~~~l~~h~~pl~~l~~  449 (457)
T MTH00124        371 PTINLMGELTIISSLFNWSPTTIILTGLGTLLTASYTLYMFLSTQRGTLPT-HITTIQPTHTREHLLMTLHILPLLLLIL  449 (457)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             426199999999999999799999999999999999999999987599804-1247899838999999999999999996


Q ss_pred             HHHHHHH
Q ss_conf             2488999
Q gi|254780866|r  468 YPVPIRD  474 (499)
Q Consensus       468 ~p~~~~~  474 (499)
T Consensus       450 ~p~l~~~  456 (457)
T MTH00124        450 KPELISG  456 (457)
T ss_pred             HHHHHCC
T ss_conf             3567248