HHsearch alignment for GI: 254780866 and conserved domain: MTH00124
>MTH00124 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=567.06 Aligned_cols=398 Identities=34% Similarity=0.584 Sum_probs=361.6
Q ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEE
Q ss_conf 05466522588999999999999999752011210----02356789998630243026540433111234310343123
Q gi|254780866|r 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 (499)
Q Consensus 75 ~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~----~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~ 150 (499)
T Consensus 52 ~~~~~g~D~lS~~li~Lt~~i~~l~il~S~~~~~~~~~~~~~~F~~~~l~l~~~l~~~F~s~dl~~FyiffE~~lIp~~l 131 (457)
T MTH00124 52 SNQWLGIDQISAPLLVLSCWLLPLMIMASQNHLQHEPTQRKRTFITTLILLQPFLILAFSATELMLFYIMFEATLIPTLI 131 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87999258878999999999999999998799852740028899999999999999999995899999999999999999
Q ss_pred EEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH--CCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 5531234-33232100011355445567766655443210001003443210--13303789999854103444554000
Q gi|254780866|r 151 IIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFP 227 (499)
Q Consensus 151 Li~~~~~-~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~--~~~~~~~~~~~~ll~~g~~~K~~~~P 227 (499)
T Consensus 132 LI~~wG~~~er~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gt~~~~~~~~~~~~~~~~~~~~~~~l~~~laF~vK~p~fp 211 (457)
T MTH00124 132 LITRWGNQPERLNAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLALLTAFMVKMPLYG 211 (457)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99886895899999999999999989999999999999769862999997624212417999999999999998668998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCC
Q ss_conf 23201010002222344333323223332111000011122331000000000122222122111000024432233210
Q gi|254780866|r 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 (499)
Q Consensus 228 fH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySs 307 (499)
T Consensus 212 ~H~WLP~Ah~eAP~~gSmiLAgvllKlG~YgliR~~~~-~~~~~~~~~~~~i~l~l~g~i~~sl~al~Q~DlKrliAYSS 290 (457)
T MTH00124 212 LHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITLL-LPPLSNTLHYPFLTLALWGALMTSSICLRQTDLKSLIAYSS 290 (457)
T ss_pred CCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88762056433870799999999999999999999998-51568999999999999999999999976101999999989
Q ss_pred CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCH
Q ss_conf 01354023331048754221023455542102333035677776420011110023556542023320134555530102
Q gi|254780866|r 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 (499)
Q Consensus 308 i~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~P 387 (499)
T Consensus 291 VsHMG~v~~gi~~~~~~g~~Ga~~~miaHgl~ss~LF~lag~iy~r~~tr~i~~~~Gl~~~~P~~~~~~~i~~la~~g~P 370 (457)
T MTH00124 291 VSHMGLVIAAILIQTQWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALP 370 (457)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999967950068999999989999999999999999961871599849905557889999999999975064
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 44431122899999998659999999999999999999999999728898765556878891268999999999999977
Q gi|254780866|r 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 (499)
Q Consensus 388 p~~GF~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi 467 (499)
T Consensus 371 p~~gF~gE~lil~~~~~~~~~~~~~~~~~~~lsa~YsL~l~~~~~~G~~~~-~~~~~~~~~~re~~~l~~h~~pl~~l~~ 449 (457)
T MTH00124 371 PTINLMGELTIISSLFNWSPTTIILTGLGTLLTASYTLYMFLSTQRGTLPT-HITTIQPTHTREHLLMTLHILPLLLLIL 449 (457)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 426199999999999999799999999999999999999999987599804-1247899838999999999999999996
Q ss_pred HHHHHHH
Q ss_conf 2488999
Q gi|254780866|r 468 YPVPIRD 474 (499)
Q Consensus 468 ~p~~~~~ 474 (499)
T Consensus 450 ~p~l~~~ 456 (457)
T MTH00124 450 KPELISG 456 (457)
T ss_pred HHHHHCC
T ss_conf 3567248