HHsearch alignment for GI: 254780866 and conserved domain: MTH00127
>MTH00127 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=556.30 Aligned_cols=399 Identities=33% Similarity=0.554 Sum_probs=363.4
Q ss_pred CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCE
Q ss_conf 40546652258899999999999999975201121----00235678999863024302654043311123431034312
Q gi|254780866|r 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 (499)
Q Consensus 74 ~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~----~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~ 149 (499)
T Consensus 52 ~~~~~lg~D~lS~~li~Lt~~l~~l~ilaS~~~~~~~~~~~~~~f~~l~l~l~~~li~~F~s~dl~lFYiffE~~LIP~~ 131 (459)
T MTH00127 52 SLNPYMATDPLSTPLLVLTCWLLPLMILASQNHTSPEPINRQRTYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTL 131 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76399837687999999999999999999558862162005889999999999999999999789999999999999999
Q ss_pred EEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH--HCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 35531234-3323210001135544556776665544321000100344321--01330378999985410344455400
Q gi|254780866|r 150 VIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMF 226 (499)
Q Consensus 150 ~Li~~~~~-~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~--~~~~~~~~~~~~~ll~~g~~~K~~~~ 226 (499)
T Consensus 132 ~LI~~WG~q~eR~~A~~~~l~YTl~gSl~lL~~i~~l~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~laF~vK~Plf 211 (459)
T MTH00127 132 IIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLSMLTLQYSQPLQLSSWGDKLWWAGCLLAFLVKMPLY 211 (459)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99998289488999999999999999999999999999855884099998743301204789999999999999965888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCC
Q ss_conf 02320101000222234433332322333211100001112233100000000012222212211100002443223321
Q gi|254780866|r 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 (499)
Q Consensus 227 PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAyS 306 (499)
T Consensus 212 p~H~WLPkAHvEAP~~gSmiLAgvLlKlG~YGliR~~~~l~p~~-~~~~~~~i~l~l~g~i~~slicl~Q~DlK~liAYS 290 (459)
T MTH00127 212 GVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLT-KELAYPFIILALWGIIMTGSICLRQTDLKSLIAYS 290 (459)
T ss_pred CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 88665836435197499999999999888999999999885889-99999999999999999999999801768998886
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCC
Q ss_conf 00135402333104875422102345554210233303567777642001111002355654202332013455553010
Q gi|254780866|r 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 (499)
Q Consensus 307 si~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~ 386 (499)
T Consensus 291 SVsHMG~v~~gi~~~~~~g~~Gal~~miaHGl~ss~LF~lag~~y~r~~tR~i~~~~Gl~~~~P~~~~~~~l~~lan~gl 370 (459)
T MTH00127 291 SVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLAL 370 (459)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 69999999999997667789999999999999999999999999995176158883997877589999999999987279
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 24443112289999999865999999999999999999999999972889876555687889126899999999999997
Q gi|254780866|r 387 PGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 (499)
Q Consensus 387 Pp~~GF~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lG 466 (499)
T Consensus 371 Pp~~nF~gE~~i~~~~~~~~~~~~~~~~~~~~lsa~YsL~l~~~~~~G~~~~~-~~~~~~~~~rE~~~l~~h~~pl~ll~ 449 (459)
T MTH00127 371 PPLPNLMGELMIITSLFNWSPWTLALTGAGTLITAGYSLYMFLMTQRGPLPAH-IIALEPSHTREHLLMALHLIPLLLLI 449 (459)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-CCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 87464889999999999985999999999999999999999999664998040-23689972789999999999999999
Q ss_pred HHHHHHHH
Q ss_conf 72488999
Q gi|254780866|r 467 IYPVPIRD 474 (499)
Q Consensus 467 i~p~~~~~ 474 (499)
T Consensus 450 l~p~li~~ 457 (459)
T MTH00127 450 LKPELIWG 457 (459)
T ss_pred HHHHHHHC
T ss_conf 91999940