HHsearch alignment for GI: 254780866 and conserved domain: MTH00127

>MTH00127 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=556.30  Aligned_cols=399  Identities=33%  Similarity=0.554  Sum_probs=363.4

Q ss_pred             CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCE
Q ss_conf             40546652258899999999999999975201121----00235678999863024302654043311123431034312
Q gi|254780866|r   74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF  149 (499)
Q Consensus        74 ~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~----~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~  149 (499)
T Consensus        52 ~~~~~lg~D~lS~~li~Lt~~l~~l~ilaS~~~~~~~~~~~~~~f~~l~l~l~~~li~~F~s~dl~lFYiffE~~LIP~~  131 (459)
T MTH00127         52 SLNPYMATDPLSTPLLVLTCWLLPLMILASQNHTSPEPINRQRTYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTL  131 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             76399837687999999999999999999558862162005889999999999999999999789999999999999999


Q ss_pred             EEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH--HCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             35531234-3323210001135544556776665544321000100344321--01330378999985410344455400
Q gi|254780866|r  150 VIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMF  226 (499)
Q Consensus       150 ~Li~~~~~-~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~--~~~~~~~~~~~~~ll~~g~~~K~~~~  226 (499)
T Consensus       132 ~LI~~WG~q~eR~~A~~~~l~YTl~gSl~lL~~i~~l~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~laF~vK~Plf  211 (459)
T MTH00127        132 IIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLSMLTLQYSQPLQLSSWGDKLWWAGCLLAFLVKMPLY  211 (459)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99998289488999999999999999999999999999855884099998743301204789999999999999965888


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCC
Q ss_conf             02320101000222234433332322333211100001112233100000000012222212211100002443223321
Q gi|254780866|r  227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS  306 (499)
Q Consensus       227 PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAyS  306 (499)
T Consensus       212 p~H~WLPkAHvEAP~~gSmiLAgvLlKlG~YGliR~~~~l~p~~-~~~~~~~i~l~l~g~i~~slicl~Q~DlK~liAYS  290 (459)
T MTH00127        212 GVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLT-KELAYPFIILALWGIIMTGSICLRQTDLKSLIAYS  290 (459)
T ss_pred             CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             88665836435197499999999999888999999999885889-99999999999999999999999801768998886


Q ss_pred             CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCC
Q ss_conf             00135402333104875422102345554210233303567777642001111002355654202332013455553010
Q gi|254780866|r  307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL  386 (499)
Q Consensus       307 si~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~  386 (499)
T Consensus       291 SVsHMG~v~~gi~~~~~~g~~Gal~~miaHGl~ss~LF~lag~~y~r~~tR~i~~~~Gl~~~~P~~~~~~~l~~lan~gl  370 (459)
T MTH00127        291 SVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLAL  370 (459)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             69999999999997667789999999999999999999999999995176158883997877589999999999987279


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             24443112289999999865999999999999999999999999972889876555687889126899999999999997
Q gi|254780866|r  387 PGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG  466 (499)
Q Consensus       387 Pp~~GF~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lG  466 (499)
T Consensus       371 Pp~~nF~gE~~i~~~~~~~~~~~~~~~~~~~~lsa~YsL~l~~~~~~G~~~~~-~~~~~~~~~rE~~~l~~h~~pl~ll~  449 (459)
T MTH00127        371 PPLPNLMGELMIITSLFNWSPWTLALTGAGTLITAGYSLYMFLMTQRGPLPAH-IIALEPSHTREHLLMALHLIPLLLLI  449 (459)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-CCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             87464889999999999985999999999999999999999999664998040-23689972789999999999999999


Q ss_pred             HHHHHHHH
Q ss_conf             72488999
Q gi|254780866|r  467 IYPVPIRD  474 (499)
Q Consensus       467 i~p~~~~~  474 (499)
T Consensus       450 l~p~li~~  457 (459)
T MTH00127        450 LKPELIWG  457 (459)
T ss_pred             HHHHHHHC
T ss_conf             91999940