HHsearch alignment for GI: 254780866 and conserved domain: MTH00144

>MTH00144 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00  E-value=0  Score=390.16  Aligned_cols=297  Identities=20%  Similarity=0.323  Sum_probs=255.4

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02356789998630243026540433111234310343123553123433232100011355445567766655443210
Q gi|254780866|r  110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK  189 (499)
Q Consensus       110 ~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~  189 (499)
T Consensus         4 ~~p~~~~f~~l~~~g~~~~~ss~~~~~l~v~lEl~sl~~~~Li~~~~~~~s~eaa~KYfl~~~~~S~~~L~gi~l~y~~~   83 (329)
T MTH00144          4 MSPSNLLFLFVMLMGTLLSLSSSHWLGVWVGLELNLIGFLPLLNIKGKSSEKESSMKYFIIQSLGSSLLIMGSVIMYNMS   83 (329)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88799999999999999999998999999999999999999997599963899999999999999999999999999988


Q ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC
Q ss_conf             00100344321013303789999854103444554000232010100022223443333232233321110000111223
Q gi|254780866|r  190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL  269 (499)
Q Consensus       190 gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~  269 (499)
T Consensus        84 g~~~~----------------~~~li~~gl~~Klg~~PfH~Wlpdv~~~~~~~~~~~l~t~-~Ki~~~~~l~~~~~----  142 (329)
T MTH00144         84 FSSSF----------------FSLLLLSGLVLKLGGFPFHFWVPSVTKGLSWLSLFLMLTW-QKVAPLFLLSLILD----  142 (329)
T ss_pred             HCHHH----------------HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHH----
T ss_conf             56699----------------9999999999987544176407889814879999999999-99999999999961----


Q ss_pred             CCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             31000000000122222122111000024432233210013540233310487542210234555421023330356777
Q gi|254780866|r  270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV  349 (499)
Q Consensus       270 ~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~  349 (499)
T Consensus       143 -~~~~~~~l~~l~~lS~iiG~l~al~q~~iKrlLAYSSI~~~G~ml~~i~~~~----~~~~~y~~~y~~~~~~l~~~~--  215 (329)
T MTH00144        143 -LNLLLMSLMVISVLSAIVGSIGGLNQTSVRLMLAYSSISHLGWMLSGILIGS----SLMWGYFLIYSLSLGFLFYSL--  215 (329)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH--
T ss_conf             -2107999999999999999999874421327889868988999999999869----999999999999999999999--


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7642001111002355654202332013455553010244431122899999998659-999999999999999999999
Q gi|254780866|r  350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-TVAVLASFGVVLSALYSLWLY  428 (499)
Q Consensus       350 i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~~-~~~~~~~~~~~ls~~~~l~~~  428 (499)
T Consensus       216 -----~~~~~~~~~~~~~~~~~~~~~~~i~~lSlaGiPP~~GF~~K~~il~~~~~~~~~~l~~i~ll~S~is~~yYlri~  290 (329)
T MTH00144        216 -----SGGDCLSMKSLTSLNPSNNLSISLLLLSLGGLPPFLGFLSKLLVLLSSMEMNMILLIVALILGSLISLYFYLNFF  290 (329)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -----987999998798871999999999999998654787799999999999985859999999999999999999999


Q ss_pred             HHHHCCCCCCC
Q ss_conf             99972889876
Q gi|254780866|r  429 RKVVFGVSKCE  439 (499)
Q Consensus       429 ~~~~~g~~~~~  439 (499)
T Consensus       291 ~~~~~~~~~~~  301 (329)
T MTH00144        291 YSLVIKSYFLS  301 (329)
T ss_pred             HHHHHHCCCCC
T ss_conf             99998679999