HHsearch alignment for GI: 254780866 and conserved domain: MTH00165

>MTH00165 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00  E-value=0  Score=510.25  Aligned_cols=407  Identities=22%  Similarity=0.300  Sum_probs=349.0

Q ss_pred             CCCCCEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             088881899986313485405466522588999999999999999752011210--023567899986302430265404
Q gi|254780866|r   56 DKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE--NFREYMIAFLVLESMVIGAFLSLD  133 (499)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~--~~~~f~~llll~~~~~~~~~~s~d  133 (499)
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~S~~f~~~v~~Is~~V~~yS~~YM~~d~~~~rF~~~l~lFv~sM~~lv~s~n  104 (571)
T MTH00165         25 LNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDKNINRFIYLVLLFVLSMMLLIISPN  104 (571)
T ss_pred             HCCCEEEEEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             75815689644201267063887734852899999999999999999889837999842899999999999999999804


Q ss_pred             CCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf             33111234310343123553123433232100011355445567766655443210001003443210133037899998
Q gi|254780866|r  134 MLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI  213 (499)
Q Consensus       134 l~~l~v~~El~~l~~~~Li~~~~~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~  213 (499)
T Consensus       105 l~~l~lgWEglGl~SylLI~fy~~~~s~~a~~~t~l~nRiGD~~ll~~i~~~~-~~gs~~~~~~~~~~~~~-~~~~~~~~  182 (571)
T MTH00165        105 LISILLGWDGLGLVSYCLVIYYQNVKSYNAGMLTALSNRIGDVAILLSIAWML-NFGSWNFIFYLDSMSNS-FEMLLIGF  182 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHCCC-HHHHHHHH
T ss_conf             99999999999999999981368868999999999999876999999999999-95772699998763033-08999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
Q ss_conf             5410344455400023201010002222344333-323223332111000011122331000000000122222122111
Q gi|254780866|r  214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV  292 (499)
Q Consensus       214 ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~sall-s~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~  292 (499)
T Consensus       183 ll~laa~~KSAQ~Pfh~WLP~AM-~aPTPVSALvHssTlVtAGvylliR~~-~~~~~--~~~~~~l~~ig~~T~l~a~~~  258 (571)
T MTH00165        183 LIILAAMTKSAQIPFSAWLPAAM-AAPTPVSALVHSSTLVTAGVYLLIRFN-PLLSG--SFFSKLLLLISSLTMFMAGLG  258 (571)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHCC--HHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999988732177622116764-589728999987689988899999988-98521--689999999999999999999


Q ss_pred             CCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH-HCCCCCCHHHHHHHHHHC
Q ss_conf             0000244322332100135402333104875422102345554210233303567777642-001111002355654202
Q gi|254780866|r  293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR-LHTRDIFAYGGLVHNMPR  371 (499)
Q Consensus       293 al~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~-~g~~~l~~l~Gl~~~~P~  371 (499)
T Consensus       259 Al~q~DiKkiiAyST~SQlG~M~~~~glg~~---~la~fHl~~HA~fKAlLFl~aG~vIh~~~~~qDir~mggl~~~~P~  335 (571)
T MTH00165        259 ANFEFDLKKIIALSTLSQLGLMMSILSLGFY---KLAFFHLLTHALFKALLFMCAGVIIHSMGGSQDIRFMGGLSKSMPL  335 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHH
T ss_conf             9976407789898789899999999980559---9999999999999999998332999972797308886696542469


Q ss_pred             CCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             3320134555530102444311228999999986--59999999999999999999999999728898765556878891
Q gi|254780866|r  372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN--SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL  449 (499)
Q Consensus       372 ~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~--~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~  449 (499)
T Consensus       336 t~~~~~i~~lsL~G~PflsGFySKD~IlE~~~~~~~~~~~~~~~~~~~~lT~~YS~Rl~~~~~~~~~~~~~~~~~~~~~~  415 (571)
T MTH00165        336 TSSCFNVSNLALCGFPFLAGFYSKDLILEMVFMSNLNMFSFLLFIFSTGLTVSYSFRLMYYSMTGDFNLSSLNNLSDESY  415 (571)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf             99999999999853505418988899999998744559999999999997899999999999818998987861888989


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2689999999999999772488
Q gi|254780866|r  450 RERCMVYPIAVLTVFFGIYPVP  471 (499)
Q Consensus       450 ~~~~~~~~l~~~~i~lGi~p~~  471 (499)
T Consensus       416 ~m~~pl~~L~~~si~~G~~~~~  437 (571)
T MTH00165        416 IMLKSMILLLFMSIFGGSFLSW  437 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999999999999999999999