HHsearch alignment for GI: 254780866 and conserved domain: MTH00204

>MTH00204 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=695.08  Aligned_cols=472  Identities=45%  Similarity=0.815  Sum_probs=440.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCEEEE-----
Q ss_conf             78999999999999998720355303579999999999999999999986308888189998631348-540546-----
Q gi|254780866|r    5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID-YFCSYH-----   78 (499)
Q Consensus         5 ~l~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----   78 (499)
T Consensus         2 ~Lslii~~Pl~~a~~~~~~~~~--~~~~~r~ial~~sl~~l~lsl~l~~~fd~~-~~~q~~~~~~Wi~~~~~~~~~~~~~   78 (486)
T MTH00204          2 GLSLIFLLLFMGIINVMGVPRE--NSVKLKKRALEWSLAILFSTLVLWGAFDGE-GQFQFINLVEWIISPALNLQWGPIV   78 (486)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCCCCCEEECCHH
T ss_conf             5399999999999999977886--178999999999999999999999981888-8548999763234678542313311


Q ss_pred             EEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCC-
Q ss_conf             6522588999999999999999752011210023567899986302430265404331112343103431235531234-
Q gi|254780866|r   79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-  157 (499)
Q Consensus        79 l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~-  157 (499)
T Consensus        79 lgvDglsl~l~lLt~~l~~i~~l~s~~~~~~~~~~f~~~ll~l~~~~lg~f~s~dl~~fyvf~E~~lip~y~LIg~wG~~  158 (486)
T MTH00204         79 FAVDGVSLFFLLLTTLLIPICILISWKSIKFLFKEFLLCLLFLEVLLIGVFLVLDLLLFYILFEGILIPMFLLIGVWGSR  158 (486)
T ss_pred             EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             20463769999999999999999874740242889999999999999999998179999999999999999998882997


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33232100011355445567766655443210001003443210133037899998541034445540002320101000
Q gi|254780866|r  158 SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV  237 (499)
Q Consensus       158 ~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~  237 (499)
T Consensus       159 ~~r~~Aa~k~~lyt~~gs~~~L~gi~~ly~~~gs~~~~~l~~~-~~~~~~~~~~~~~~~l~f~vK~~~~P~H~WLPda~~  237 (486)
T MTH00204        159 EEKVRASYYFFFYTFAGSVFMLLGIFQLYQITGTTDYQILLNI-KLPLSTQKWALVGFFLSLAVKIPQIPFHIWLPQAHV  237 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             8999999999999999899999999999998284379999972-033147999999999999998625146376255378


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf             22223443333232233321110000111223310000000001222221221110000244322332100135402333
Q gi|254780866|r  238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG  317 (499)
Q Consensus       238 ~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~  317 (499)
T Consensus       238 ~APt~~S~llag~l~K~g~ygllR~~~~~~p~~~~~~~~~i~~l~~is~i~g~l~Al~Q~dlKrllAYSSIshmG~i~lg  317 (486)
T MTH00204        238 EAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPVIVMLSVIAVIYGSLMTCRQVDFKRLIAYSSVAHMGLVPLG  317 (486)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89922778888999998788679888774431068888999998999999999999998888999999669999999999


Q ss_pred             HCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHH
Q ss_conf             10487542210234555421023330356777764200111100235565420233201345555301024443112289
Q gi|254780866|r  318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL  397 (499)
Q Consensus       318 l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~  397 (499)
T Consensus       318 l~~~~~~g~~ga~~~mi~Hg~~~~~LF~~~g~i~~~~~t~~i~~~gGL~~~~P~~a~~~~i~~la~~GlP~~~gF~ge~~  397 (486)
T MTH00204        318 LFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGVTLTMPLFVIIMLVLSLANMGIPLSCNFVGEFF  397 (486)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             99667478999999999999999999999999986048587999689344487999999999999818976475889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986599999999999999999999999997288987655568788912689999999999999772488999999
Q gi|254780866|r  398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS  477 (499)
Q Consensus       398 i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~~~~~  477 (499)
T Consensus       398 i~~g~~~~~~~~~~~~~~~~vlsa~Y~l~~~~~~~~g~~~~~-~~~~~d~~~~e~~~~~~L~~~~i~~Gi~P~~il~~i~  476 (486)
T MTH00204        398 SLLAAFEYNYGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNY-LLFNRDLNRRELLAILPLLIAIFLGGIVPFPIIDLVK  476 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             999999985999999999999999999999999875999854-4467999987999999999999999973198998887


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780866|r  478 VPLS  481 (499)
Q Consensus       478 ~~~~  481 (499)
T Consensus       477 ~sv~  480 (486)
T MTH00204        477 NSLV  480 (486)
T ss_pred             HHEE
T ss_conf             7424