HHsearch alignment for GI: 254780866 and conserved domain: MTH00204
>MTH00204 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=695.08 Aligned_cols=472 Identities=45% Similarity=0.815 Sum_probs=440.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCEEEE-----
Q ss_conf 78999999999999998720355303579999999999999999999986308888189998631348-540546-----
Q gi|254780866|r 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID-YFCSYH----- 78 (499)
Q Consensus 5 ~l~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----- 78 (499)
T Consensus 2 ~Lslii~~Pl~~a~~~~~~~~~--~~~~~r~ial~~sl~~l~lsl~l~~~fd~~-~~~q~~~~~~Wi~~~~~~~~~~~~~ 78 (486)
T MTH00204 2 GLSLIFLLLFMGIINVMGVPRE--NSVKLKKRALEWSLAILFSTLVLWGAFDGE-GQFQFINLVEWIISPALNLQWGPIV 78 (486)
T ss_pred CHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCCCCCEEECCHH
T ss_conf 5399999999999999977886--178999999999999999999999981888-8548999763234678542313311
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCC-
Q ss_conf 6522588999999999999999752011210023567899986302430265404331112343103431235531234-
Q gi|254780866|r 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG- 157 (499)
Q Consensus 79 l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~- 157 (499)
T Consensus 79 lgvDglsl~l~lLt~~l~~i~~l~s~~~~~~~~~~f~~~ll~l~~~~lg~f~s~dl~~fyvf~E~~lip~y~LIg~wG~~ 158 (486)
T MTH00204 79 FAVDGVSLFFLLLTTLLIPICILISWKSIKFLFKEFLLCLLFLEVLLIGVFLVLDLLLFYILFEGILIPMFLLIGVWGSR 158 (486)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 20463769999999999999999874740242889999999999999999998179999999999999999998882997
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33232100011355445567766655443210001003443210133037899998541034445540002320101000
Q gi|254780866|r 158 SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 (499)
Q Consensus 158 ~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~ 237 (499)
T Consensus 159 ~~r~~Aa~k~~lyt~~gs~~~L~gi~~ly~~~gs~~~~~l~~~-~~~~~~~~~~~~~~~l~f~vK~~~~P~H~WLPda~~ 237 (486)
T MTH00204 159 EEKVRASYYFFFYTFAGSVFMLLGIFQLYQITGTTDYQILLNI-KLPLSTQKWALVGFFLSLAVKIPQIPFHIWLPQAHV 237 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 8999999999999999899999999999998284379999972-033147999999999999998625146376255378
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 22223443333232233321110000111223310000000001222221221110000244322332100135402333
Q gi|254780866|r 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 (499)
Q Consensus 238 ~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~ 317 (499)
T Consensus 238 ~APt~~S~llag~l~K~g~ygllR~~~~~~p~~~~~~~~~i~~l~~is~i~g~l~Al~Q~dlKrllAYSSIshmG~i~lg 317 (486)
T MTH00204 238 EAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPVIVMLSVIAVIYGSLMTCRQVDFKRLIAYSSVAHMGLVPLG 317 (486)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89922778888999998788679888774431068888999998999999999999998888999999669999999999
Q ss_pred HCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHH
Q ss_conf 10487542210234555421023330356777764200111100235565420233201345555301024443112289
Q gi|254780866|r 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 (499)
Q Consensus 318 l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~ 397 (499)
T Consensus 318 l~~~~~~g~~ga~~~mi~Hg~~~~~LF~~~g~i~~~~~t~~i~~~gGL~~~~P~~a~~~~i~~la~~GlP~~~gF~ge~~ 397 (486)
T MTH00204 318 LFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGVTLTMPLFVIIMLVLSLANMGIPLSCNFVGEFF 397 (486)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99667478999999999999999999999999986048587999689344487999999999999818976475889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986599999999999999999999999997288987655568788912689999999999999772488999999
Q gi|254780866|r 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 (499)
Q Consensus 398 i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~~~~~ 477 (499)
T Consensus 398 i~~g~~~~~~~~~~~~~~~~vlsa~Y~l~~~~~~~~g~~~~~-~~~~~d~~~~e~~~~~~L~~~~i~~Gi~P~~il~~i~ 476 (486)
T MTH00204 398 SLLAAFEYNYGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNY-LLFNRDLNRRELLAILPLLIAIFLGGIVPFPIIDLVK 476 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 999999985999999999999999999999999875999854-4467999987999999999999999973198998887
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780866|r 478 VPLS 481 (499)
Q Consensus 478 ~~~~ 481 (499)
T Consensus 477 ~sv~ 480 (486)
T MTH00204 477 NSLV 480 (486)
T ss_pred HHEE
T ss_conf 7424