HHsearch alignment for GI: 254780866 and conserved domain: MTH00205
>MTH00205 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=552.63 Aligned_cols=399 Identities=30% Similarity=0.524 Sum_probs=365.3
Q ss_pred CCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEE
Q ss_conf 5405466522588999999999999999752011210--02356789998630243026540433111234310343123
Q gi|254780866|r 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE--NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 (499)
Q Consensus 73 ~~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~--~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~ 150 (499)
T Consensus 48 ~~is~~~~~D~lS~~li~Lt~~i~~l~~l~S~~~~~~~~~~~~f~~l~lll~~~li~~F~s~dll~FyiffE~~LIP~~l 127 (452)
T MTH00205 48 SSISSSFSVDSVSLPLIMLSFWISVLMILSSFFILKSSNNSSLFTVTVIMLCLILILSFSSDNLLLFYILFEASLIPTLI 127 (452)
T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21348881017259999999999999999877998646205799999999999999999997899999999999999999
Q ss_pred EEEECC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 553123-43323210001135544556776665544321000100344321013--303789999854103444554000
Q gi|254780866|r 151 IIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFP 227 (499)
Q Consensus 151 Li~~~~-~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~--~~~~~~~~~~ll~~g~~~K~~~~P 227 (499)
T Consensus 128 LI~~wG~~~er~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~laF~vK~Plfp 207 (452)
T MTH00205 128 LIMVWGYQPERLQASMYMLLYTLFASLPLLIGIIFFSDLNFHSSMFFMMDMGIGWSSDLVLSLYWIFCMLAFLVKMPLYL 207 (452)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99870998789999999999999989999999999999929951999998876444168999999999999998601501
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCC
Q ss_conf 23201010002222344333323223332111000011122331000000000122222122111000024432233210
Q gi|254780866|r 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 (499)
Q Consensus 228 fH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySs 307 (499)
T Consensus 208 ~H~WLP~Ah~eAP~~~S~ilagvllK~G~ygl~R~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~al~Q~D~K~liAYSS 286 (452)
T MTH00205 208 THLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRVSMILYSV-NYKVSELFFSVSLLGGVMTSMICLRQSDLKSLIAYSS 286 (452)
T ss_pred CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 503073532539818999999999986188999998873045-8999999999999999999999999987889999943
Q ss_pred CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCH
Q ss_conf 01354023331048754221023455542102333035677776420011110023556542023320134555530102
Q gi|254780866|r 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 (499)
Q Consensus 308 i~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~P 387 (499)
T Consensus 287 vshmG~v~~g~~~~~~~g~~ga~~~mi~Hgl~s~~LF~lag~~y~r~~tR~i~~~~Gl~~~~P~~~~~~~l~~~~n~g~P 366 (452)
T MTH00205 287 VGHMGLMVVGVVSMTSWGYNGAIIMMVAHGLCSSGMFCLANNWYERSNSRSMMMTKGMLNIFPSLVLFWFLLFSCNMSAP 366 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99981899999987299999999999999988899999751567444869988849838788999999999999987255
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 44431122899999998659999999999999999999999999728898765556878891268999999999999977
Q gi|254780866|r 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 (499)
Q Consensus 388 p~~GF~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi 467 (499)
T Consensus 367 p~~nF~gE~~i~~~~~~~~~~~~~~~~~~~~lsa~Ysl~l~~~~~~G~~~~-~~~~~~~~~~re~~~l~~h~~Pl~~l~l 445 (452)
T MTH00205 367 PSINLLSEIGLAMSLLSSSKVSGVPLALISFFVGVYSMYLYSQSSHGSVSS-QFSSFLEIKEVEYFVGALHWFPLFILIL 445 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 126199999999999998799999999999999999999999975699835-3003899726799999999999999998
Q ss_pred HHHHHH
Q ss_conf 248899
Q gi|254780866|r 468 YPVPIR 473 (499)
Q Consensus 468 ~p~~~~ 473 (499)
T Consensus 446 ~p~l~~ 451 (452)
T MTH00205 446 VPKIFI 451 (452)
T ss_pred HHHHHC
T ss_conf 488872