HHsearch alignment for GI: 254780866 and conserved domain: MTH00217
>MTH00217 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=691.80 Aligned_cols=472 Identities=43% Similarity=0.802 Sum_probs=436.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC-EE---EEEE
Q ss_conf 7899999999999999872035530357999999999999999999998630888818999863134854-05---4665
Q gi|254780866|r 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CS---YHLG 80 (499)
Q Consensus 5 ~l~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~l~ 80 (499)
T Consensus 1 ~L~~~i~lPllgal~l~~~p~~~--~~~~~~~~l~~sl~~l~~~l~l~~~f~~~-~~~q~~~~~~Wi~~~~~~~~~~~lg 77 (482)
T MTH00217 1 MLESIFILPLIGILALLIIPRDD--IMRLWKAGLEWSLLTLTGTILLWASFDGA-GQFQVVKRLDWIFGVEPGFGFVIFG 77 (482)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEECCCCCCCCCCCEEEEC
T ss_conf 95899999999999999939815--77899999999999999999999970788-8647999864101358664500125
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCC-CC
Q ss_conf 22588999999999999999752011210023567899986302430265404331112343103431235531234-33
Q gi|254780866|r 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SE 159 (499)
Q Consensus 81 iD~ls~~f~~l~~~i~~l~~~ys~~~~~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~-~~ 159 (499)
T Consensus 78 vDgls~~lv~Lt~~l~~i~~l~s~~~~~~~~~~f~~~~L~~~~~~lGvf~s~Dl~~fyvf~E~~lip~y~LI~~wg~~~~ 157 (482)
T MTH00217 78 VDGISIFFIILTALLIPICVLISLKSIKFLIKEFLLCLLFIEVLLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSREE 157 (482)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 64677999999999999999985374114278999999999999999999838999999999999999994536478989
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23210001135544556776665544321000100344321013303789999854103444554000232010100022
Q gi|254780866|r 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 (499)
Q Consensus 160 ~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~a 239 (499)
T Consensus 158 ~~~Aa~k~~l~t~~Gs~~~L~gi~~ly~~~Gt~~~~~l~~~-~~~~~~~~~~~~~~~i~f~vK~~~~PfH~WLPda~~~A 236 (482)
T MTH00217 158 KIQASYYFFFYTFIGSVFMLLGIFTLYSNAGSTDYQALCCL-KIEKELQYFVFIGFFLSLAIKIPKIPFHIWLPQAHVEA 236 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999989999999999999998087429999975-04446899999999999999970520250350572238
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 22344333323223332111000011122331000000000122222122111000024432233210013540233310
Q gi|254780866|r 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 (499)
Q Consensus 240 p~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~ 319 (499)
T Consensus 237 Pt~~S~llagvl~K~g~ygliR~~~~l~p~~~~~~~~~i~~l~~itii~ga~~Al~Q~diKrllAYSSIshmG~i~lgl~ 316 (482)
T MTH00217 237 PVAGSVVLAGVLLKLGGYGFIRFSWPLLPDAAEYFGPLILTLSLFAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGLF 316 (482)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 80688888898888756666999987550037664179999878889999999988316669999989989999999999
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 48754221023455542102333035677776420011110023556542023320134555530102444311228999
Q gi|254780866|r 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 (499)
Q Consensus 320 ~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~ 399 (499)
T Consensus 317 ~~~~~g~~ga~~~~i~H~~~~~~LFl~~g~i~~~~~t~~i~~~gGL~~~~P~~~~~~~i~~ls~~GlP~~~GF~ge~~i~ 396 (482)
T MTH00217 317 SHTIQGLVAAVFLMLAHGLVSSALFIAVTFLYDRYHTRLIKYYRGMAITMPLFGMLLLILVLANASIPLSCNFIGEFLSL 396 (482)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 72789999999999999999999999999999713853799958956659398999999999972578646289999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998659999999999999999999999999728898765556878891268999999999999977248899999999
Q gi|254780866|r 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 (499)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~~~~~~~ 479 (499)
T Consensus 397 ~~~~~~~~~~~~~a~~~~il~a~Y~l~~~~~v~~g~~~~~-~~~~~d~~~~e~~~~~~L~~l~i~~Gl~P~~~ld~i~~s 475 (482)
T MTH00217 397 LAAFEYSFIAGVLASVGMVLSAGYSIYMYNRICFGAFSKY-LYFSRDLNRREFYSILPLVILIIIMGVFPFLVVDEVKGS 475 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9999985999999999999999999999999983898865-557799986599999999999999996429999766564
Q ss_pred HH
Q ss_conf 99
Q gi|254780866|r 480 LS 481 (499)
Q Consensus 480 ~~ 481 (499)
T Consensus 476 v~ 477 (482)
T MTH00217 476 II 477 (482)
T ss_pred EE
T ss_conf 06