HHsearch alignment for GI: 254780866 and conserved domain: PRK05846
>PRK05846 NADH dehydrogenase subunit M; Reviewed.
Probab=100.00 E-value=0 Score=723.26 Aligned_cols=485 Identities=54% Similarity=0.965 Sum_probs=452.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCEEEEE
Q ss_conf 983078999999999999998720355303579999999999999999999986308888189998631348-5405466
Q gi|254780866|r 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID-YFCSYHL 79 (499)
Q Consensus 1 m~~p~l~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 79 (499)
T Consensus 1 m~~plL~llVl~Pllgall~~l~~~~--~~~~~~~~a~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~w~~~~gi~~~l 78 (495)
T PRK05846 1 MNFPLLSILIFLPLIGGLLILLTERA--ARRLARWIALITTLLTLALSLVLWIGFDPSNPGFQFVEKVPWIPRFGISYHL 78 (495)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEE
T ss_conf 99769999999999999999997253--2789999999999999999999999974788864899864456666806898
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 52258899999999999999975201121002356789998630243026540433111234310343123553123433
Q gi|254780866|r 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 (499)
Q Consensus 80 ~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~~ 159 (499)
T Consensus 79 ~~D~ls~~~~~l~~~v~~~~~l~s~~~~~~~~~~f~~~~ll~~~~m~g~~~a~dl~~~fvf~El~~i~sy~Li~~~~~~~ 158 (495)
T PRK05846 79 GVDGISLLLVVLTALLTPLAVLASWEEIKKRVKFYMAALLILEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGGKN 158 (495)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 51087899999999999999999866314630189999999999999999976299999999999999999999759779
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 23210001135544556776665544321-----0001003443210133037899998541034445540002320101
Q gi|254780866|r 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWE-----KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 (499)
Q Consensus 160 ~~~aa~ky~i~~~~~s~~lL~g~~~l~~~-----~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~ 234 (499)
T Consensus 159 ~~~Aa~ky~i~~~~gs~~~L~gi~~l~~~~~~~~~gs~~~~~l~~~-~~~~~~~~~~~~~~~~g~~~K~a~~PfH~WlPd 237 (495)
T PRK05846 159 RIYAATKFFLYTLLGSLLMLVAIIYLVVVYYNAGVGTFDIADLLNT-PLPAGVQYLLFLAFFIAFAVKMPMFPLHTWLPD 237 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
T ss_conf 9999999999999999999999999999996345401389999855-577258999999999999998622423322467
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHH
Q ss_conf 00022223443333232233321110000111223310000000001222221221110000244322332100135402
Q gi|254780866|r 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 (499)
Q Consensus 235 ~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i 314 (499)
T Consensus 238 ay~~ap~~vsalls~~~~k~g~y~l~R~~~~~f~~~~~~~~~~l~~lg~~t~~~g~~~Al~Q~d~KrllAYSsisq~G~i 317 (495)
T PRK05846 238 AHVEAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFV 317 (495)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 66789953777788999999999889976113530159999999999988899899999998320047899899999999
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCC
Q ss_conf 33310487542210234555421023330356777764200111100235565420233201345555301024443112
Q gi|254780866|r 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 (499)
Q Consensus 315 ~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~ 394 (499)
T Consensus 318 l~g~~~~~~~~~~~a~~~~~~h~~~k~~lF~~~g~i~~~~g~~~i~~l~Gl~~~~P~~~~~~~i~~lsl~GiPp~~GF~~ 397 (495)
T PRK05846 318 TLGIFAGNQLGVQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVG 397 (495)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99998676999999999999999999999999999999649817352378465496889998999999826753051889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999986599999999999999999999999997288987655568788912689999999999999772488999
Q gi|254780866|r 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 (499)
Q Consensus 395 k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~~ 474 (499)
T Consensus 398 k~~i~~~~~~~~~~~~~~~~~~~~l~~~y~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~Gi~P~~~~~ 477 (495)
T PRK05846 398 EFLILLGSFQVNPWIAFIATTGLILAAVYSLWLYKRVMFGPVAKEEEAELKDLNGRELLILLPLVALLILLGVYPKPLLD 477 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987499999999999999999999999998189895224477899987999999999999999970799999
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999985202
Q gi|254780866|r 475 TFSVPLSSIIENYT 488 (499)
Q Consensus 475 ~~~~~~~~l~~~~~ 488 (499)
T Consensus 478 ~i~~a~~~ll~~~~ 491 (495)
T PRK05846 478 VIHPSVENLLQWIA 491 (495)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999735