HHsearch alignment for GI: 254780866 and conserved domain: PRK06277

>PRK06277 hydrogenase subunit F; Validated.
Probab=100.00  E-value=0  Score=627.50  Aligned_cols=468  Identities=18%  Similarity=0.256  Sum_probs=394.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf             98307899999999999999872035530357999999999999999999998-63088881899986313485405466
Q gi|254780866|r    1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWS-VFDKGRSSFQMIEYYHWIDYFCSYHL   79 (499)
Q Consensus         1 m~~p~l~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l   79 (499)
T Consensus         1 m~l--L~l~v~~Pl~~a~li~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~---~~i~~   68 (479)
T PRK06277          1 MNL--LPLMVVFPMICAIIFNLLHGK---DKLIKPLTLLTAILLPILPFIGSYGIYFFGGHGP----ENGLH---SGITY   68 (479)
T ss_pred             CCH--HHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH----HHCCC---CCCEE
T ss_conf             976--899999999999999996795---5899999999999999999999988772554106----54035---67010


Q ss_pred             EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf             52258899999999999999975201121002356789998630243026540433111234310343123553123433
Q gi|254780866|r   80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE  159 (499)
Q Consensus        80 ~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~~  159 (499)
T Consensus        69 ~~d~l~~~~~~~~~l~~~l~~~~~~~~-~~~~~~f~~l~l~~~~~~~g~~~s~dl~~~fvf~E~~~i~sy~Li~~~~~~~  147 (479)
T PRK06277         69 LYGPAKQLIITVLMLIASLVLITGLGE-KKSSGLYVALMLMGLASVSAIVLADDIFNIYVFFEIAAIAQVGLVIASGTEK  147 (479)
T ss_pred             EECHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             453066999999999999999999510-3467889999999999999999997899999999999999999999779899


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             232100011355445567766655443210001003443210133--037899998541034445540002320101000
Q gi|254780866|r  160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV  237 (499)
Q Consensus       160 ~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~--~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~  237 (499)
T Consensus       148 ~~~aa~ky~i~~~~gs~~~L~gi~~ly~~tgs~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~l~PfH~Wlpday~  227 (479)
T PRK06277        148 AYRTALKYMILGNVAGSILLLGIAFLLAATGTLNISDMHNFLLNNPTTPTIYGGLLMLIIGLLYGSGLPPFHTVKADIYA  227 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCHHHHHC
T ss_conf             99999999999999999999999999999679579999999871964089999999999999999874234214033407


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC--CCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHH
Q ss_conf             222234433332322333211100001112233--100000000012222212211100002443223321001354023
Q gi|254780866|r  238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA--SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT  315 (499)
Q Consensus       238 ~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~--~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~  315 (499)
T Consensus       228 ~ap~~~salLs~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~tii~g~l~Al~Q~dlKrllAYSSIs~~Gyi~  306 (479)
T PRK06277        228 KAKPFGSALLQTY-SKFVLVALMLVIFKLFGGLSYFASAQGVLIALSVLAMVFGVVMALLQTDYKKLLAYHAISQGGYVA  306 (479)
T ss_pred             CCCHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             6867999999999-999999999999997022444689999999999999999999999712468888887899999999


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCH
Q ss_conf             33104875422102345554210233303567777642001111002355654202332013455553010244431122
Q gi|254780866|r  316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGE  395 (499)
Q Consensus       316 ~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k  395 (499)
T Consensus       307 lgi~~~~~~~~~gai~~~i~h~~~k~~LFl-~g~i~~~~~~~~i~~l~Gl~~~~P~~a~~~~i~~lsl~GiPp~~GF~sK  385 (479)
T PRK06277        307 AGLALGTPLGIVAGIFHAINHVIYKSALFL-GAHIVYRTKEGNLNKLGGLLPVMPAVAFMVLCAKLAISGVPPFNGFQSK  385 (479)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999837688899999999999999999999-9999995598529986281867799999999999999866664279999


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999865-999999999999999999999999972889876555--687889126899999999999997724889
Q gi|254780866|r  396 FLVIMSVFQNS-NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ--QLKDLSLRERCMVYPIAVLTVFFGIYPVPI  472 (499)
Q Consensus       396 ~~i~~~~~~~~-~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~  472 (499)
T Consensus       386 ~~i~~~a~~~~~~~l~~~~~~~sv~~~~y~lr~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~i~~Gi~P~~~  465 (479)
T PRK06277        386 LLLAQAAMNVNMPELAIIMIIVSIGTFVSMMKAFYLIYLKPCPEEQLEEYKKAKVPKYAVFSLVVLTILCIILGICPDLV  465 (479)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999838799999999999999999999999996088885433334667898879999999999999999633999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q gi|254780866|r  473 RDTFSVPLSSI  483 (499)
Q Consensus       473 ~~~~~~~~~~l  483 (499)
T Consensus       466 l~~i~p~~~~l  476 (479)
T PRK06277        466 TNIIYPFANEI  476 (479)
T ss_pred             HHHHHHHHHHH
T ss_conf             99899999986