HHsearch alignment for GI: 254780866 and conserved domain: PRK06459
>PRK06459 hydrogenase 4 subunit B; Validated.
Probab=100.00 E-value=0 Score=500.01 Aligned_cols=375 Identities=19% Similarity=0.255 Sum_probs=312.6
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 52258899999999999999975201121002356789998630243026540433111234310343123553123433
Q gi|254780866|r 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 (499)
Q Consensus 80 ~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~~ 159 (499)
T Consensus 40 ~~~pl~~ff~iii~~v~~~~~~ySi~Y~~-~~~~~~~l~~lFi~sMllvv~a~n~~~F~v~WElMsL~Sy~LI~~~~~~- 117 (578)
T PRK06459 40 QEYPYLSFFYIIAGLVWVLASLYSLSYDY-YGKWLSMLYSLTVLGMIIVLTSDNYLEFLAGWETMTIPSYVIIALYRKD- 117 (578)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 82749999999999999999999211442-5159999999999999999997309999999999999999999970555-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 23210001135544556776665544321000100344321013303789999854103444554000232--0101000
Q gi|254780866|r 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT--WLPNAHV 237 (499)
Q Consensus 160 ~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~--WlP~~y~ 237 (499)
T Consensus 118 -~~aa~~y~~~~~~G~~~ll~~~~ll~~~~Gs~~f~~~~~~---------~~~lL~~~GFg~KaG~~Pfhvh~WLP~Ah~ 187 (578)
T PRK06459 118 -WKPAFTFMAFGELSTVLILAGFALAYSQTGSFNFERLSTQ---------VPLIITSFGFIIKMGMFPFLVSEWLPIAHG 187 (578)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHH---------HHHHHHHHHHHHHHCCCCCHHHCCCCCCCC
T ss_conf -0078999999999999999999999998088248877878---------999999999999851051033311740117
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 22223443333232233321110000111223310000000001222221221110000244322332100135402333
Q gi|254780866|r 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 (499)
Q Consensus 238 ~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~ 317 (499)
T Consensus 188 ~aPs~vSal~Sg~m~k~gvyg~~r~~~-l~-~~~~~~g~~~~~~G~~s~~~G~l~A~~q~D~KrlLAYSsi~niG~i~~~ 265 (578)
T PRK06459 188 NAPSNASAVLSATMTLMGVYGILKMES-LS-PVSPYLGIFLLAIGAFSILFGALYSYVSDHVKGLLAFSTIENNGAILVA 265 (578)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899579999999999999999999999-60-3535999999999999999999999987628999988349988999999
Q ss_pred HCCCC--------CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHH
Q ss_conf 10487--------5422102345554210233303567777642001111002355654202332013455553010244
Q gi|254780866|r 318 IFSGM--------KSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 (499)
Q Consensus 318 l~~~~--------~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~ 389 (499)
T Consensus 266 lGl~~~~~~~~l~~~~~~a~l~h~~nHa~fK~lLFl~aG~v~~~~~~~~~~~~~gl------t~~~~lig~~sisglPP~ 339 (578)
T PRK06459 266 LGLYLELVSSDLREFVLFTVIIYSIAHSLAKTGLFLSSGYVEGEYLTTARSFEYGL------SVLGAVLLAMSLSGLLPT 339 (578)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHCCCH------HHHHHHHHHHHHHCCCCC
T ss_conf 99999814505799999999999999999999999710638998625525640678------999999999999629985
Q ss_pred HHHCCHHHHHHHHHHHH----HH-------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 43112289999999865----99-------99999999999999999999999728898765556878891268999999
Q gi|254780866|r 390 SGFIGEFLVIMSVFQNS----NT-------VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 (499)
Q Consensus 390 ~GF~~k~~i~~~~~~~~----~~-------~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l 458 (499)
T Consensus 340 nGFvseWli~qs~~~~~~~~~~~~~~~~~~~~~~lAlt~ala~~~~vk~~g~~fl~~pr~~~a~~a~e~p~~~------~ 413 (578)
T PRK06459 340 IGGVATWMLLESLFMEAYTLPHFIGILPIIAGAMIAMGEGLATGSLIKYISYTQLFRPIKDHASKIKQGPILA------V 413 (578)
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCCHHH------H
T ss_conf 5588999999999970555313899999999999999999999999999971001889975677440155899------9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999772488999999999
Q gi|254780866|r 459 AVLTVFFGIYPVPIRDTFSVPL 480 (499)
Q Consensus 459 ~~~~i~lGi~p~~~~~~~~~~~ 480 (499)
T Consensus 414 ~~~~~ll~~~~~~~i~~~~~~~ 435 (578)
T PRK06459 414 GLIVLILTVGLAYLISPFRTGV 435 (578)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998636888777