HHsearch alignment for GI: 254780866 and conserved domain: PRK06473
>PRK06473 NAD(P)H-quinone oxidoreductase subunit D4; Validated.
Probab=100.00 E-value=0 Score=703.15 Aligned_cols=489 Identities=37% Similarity=0.615 Sum_probs=443.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCC-CEEEEEEEEH
Q ss_conf 789999999999999987203553035799999999999999999999863088881899986313485-4054665225
Q gi|254780866|r 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDG 83 (499)
Q Consensus 5 ~l~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~iD~ 83 (499)
T Consensus 1 mLsllI~lPLlgAll~~~l~~~~-~~~~~~~i~l~~~~~~~~~sl~l~~~~~~~~~~~~~~~~~~Wi~~~gi~~~l~vDg 79 (500)
T PRK06473 1 MLSALIWVPLLGAILIGFLPSGL-NGKLSRSVALVIASVLLLLSLVLAFQFDPGNPNQQFTEFIPWIDSLGLSYHLGVDG 79 (500)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEHHH
T ss_conf 98999999999999999975235-45999999999999999999999999918998669998742567678067753588
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 88999999999999999752011210023567899986302430265404331112343103431235531234332321
Q gi|254780866|r 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYA 163 (499)
Q Consensus 84 ls~~f~~l~~~i~~l~~~ys~~~~~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~~~~~a 163 (499)
T Consensus 80 ls~~ll~lt~~l~~i~i~~~~-~~~~~~~~f~~l~ll~~~~~~g~~~s~dl~~~fvf~E~~~i~sy~LI~~~g~~~~~~a 158 (500)
T PRK06473 80 LSLPLLVLNSLLTLIAIYSSD-ESLERPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYA 158 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 899999999999999999636-6556412999999999999999999752999999999999999999994387888999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 000113554455677666554432100010034432-1013303789999854103444554000232010100022223
Q gi|254780866|r 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA-MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 (499)
Q Consensus 164 a~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~-~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~ 242 (499)
T Consensus 159 a~ky~i~~~~gs~~~L~gi~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~gf~~K~~~~P~H~WLPdA~~~aPt~ 238 (500)
T PRK06473 159 ATKFLLYTAISGILVLVSFLGLVWLSGASSFDYEPLLSHTLPLATQLLLLAPILVGFGIKIPLVPFHTWLPDAHVEASTP 238 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHCCCCC
T ss_conf 99899999752689999999999993865088999987267524899999999999998621312150314142008985
Q ss_pred CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 44333323223332111000011122331000000000122222122111000024432233210013540233310487
Q gi|254780866|r 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGM 322 (499)
Q Consensus 243 ~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~ 322 (499)
T Consensus 239 vSallsg~l~K~G~y~liR~~~~~~~~~~~~~~~~l~~lg~~t~i~g~~~Al~Q~DlKrllAYSSis~mG~i~lgi~~~~ 318 (500)
T PRK06473 239 VSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAAT 318 (500)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 04778899998889987986664124579999999999999999899999999803627889856999999999999676
Q ss_pred CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHH---HHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 5422102345554210233303567777642001111002355---6542023320134555530102444311228999
Q gi|254780866|r 323 KSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 (499)
Q Consensus 323 ~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl---~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~ 399 (499)
T Consensus 319 ~~g~~ga~~~~i~H~~~k~~LFl~~G~i~~~~gt~~i~~lgGL~~~~~~mP~~~~~f~i~~la~~G~Pp~~GF~~k~li~ 398 (500)
T PRK06473 319 PLSILAAVAQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLVF 398 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 56799999999999999999999999999862881399858945332208399999999999871774304099999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998659999999999999999999999999728898765556878891268999999999999977248899999999
Q gi|254780866|r 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 (499)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~~~~~~~ 479 (499)
T Consensus 399 ~g~~~~~~~~~~~~~~~~~lta~Y~l~~~~~~f~G~~~~-~~~~~~~~~~~~~~~~~~L~~~~i~~Gi~P~~~l~~~~~a 477 (500)
T PRK06473 399 RGSFPIFPVQTLLCMIGTGLTAVYFLLLINRVFFGRLTA-ELSNLPRVLWSERLPALVLAVLIVILGIQPSWLVRWSEPT 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998599999999999999999999999998089970-0256899738699999999999999997689999999999
Q ss_pred HHHHHHHCCCHHHHHCC
Q ss_conf 99998520200222013
Q gi|254780866|r 480 LSSIIENYTLKTGYSDS 496 (499)
Q Consensus 480 ~~~l~~~~~~~~~~~~~ 496 (499)
T Consensus 478 a~~ll~~~~y~~~v~~~ 494 (500)
T PRK06473 478 ASALLTGQSTVAAVSLN 494 (500)
T ss_pred HHHHHCCHHHHHHHHCC
T ss_conf 99995976789888074