HHsearch alignment for GI: 254780866 and conserved domain: PRK06590
>PRK06590 NADH dehydrogenase subunit L; Reviewed.
Probab=100.00 E-value=0 Score=646.37 Aligned_cols=463 Identities=24% Similarity=0.392 Sum_probs=404.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC---CCEEEEEEE
Q ss_conf 78999999999999998720355303579999999999999999999986308888189998631348---540546652
Q gi|254780866|r 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID---YFCSYHLGV 81 (499)
Q Consensus 5 ~l~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i 81 (499)
T Consensus 4 ll~lii~~Pl~ga~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~~ 82 (619)
T PRK06590 4 LLWLIVLLPLIGFLILGLFGGR-IGEKGAHLVGTGSVGLSALLSLVVFFDFRALGGQAFNQTLWTWISVGDFDVDFGLRV 82 (619)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECEECCCCCEEEEEEE
T ss_conf 9999999999999999997512-333899999999999999999999999846799627997540434177471688864
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECC-CC
Q ss_conf 258899999999999999975201121--002356789998630243026540433111234310343123553123-43
Q gi|254780866|r 82 DGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GS 158 (499)
Q Consensus 82 D~ls~~f~~l~~~i~~l~~~ys~~~~~--~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~-~~ 158 (499)
T Consensus 83 D~ls~~~~~~~~~i~~~v~~ys~~ym~~~~~~~rf~~~l~lf~~~ml~~v~a~nl~~~~v~wE~~~l~sy~LI~~~~~~~ 162 (619)
T PRK06590 83 DGLSATMLVVVTGVSFLVHIYSIGYMAGDPGYSRFFAYLSLFTFSMLMLVLSDNLLQLFFGWEGVGLCSYLLIGFWYKKP 162 (619)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 08789999999999999999968981799865079999999999999999972299999999999999999998745786
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3232100011355445567766655443210001003443210133--03789999854103444554000232010100
Q gi|254780866|r 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 (499)
Q Consensus 159 ~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~--~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y 236 (499)
T Consensus 163 ~~~~aa~k~~i~~~~g~~~~l~gi~~l~~~~gt~~~~~i~~~~~~~~~~~~~~~~~~~l~~g~~~Ksa~~P~h~WLpda~ 242 (619)
T PRK06590 163 SANAAAMKAFVVNRVGDFGLALGIFLLFAEFGSLNYDEVFAAAPELLGNSALTLICLLLFIGAMGKSAQFPLHTWLPDAM 242 (619)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 88999999999984769999999999999958986999998745234613999999999999999866076514346662
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHH
Q ss_conf 02222344333-32322333211100001112233100000000012222212211100002443223321001354023
Q gi|254780866|r 237 VQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 (499)
Q Consensus 237 ~~ap~~~sall-s~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~ 315 (499)
T Consensus 243 -~aPtpvSAllha~~~v~aGvy~~~r~~-~~~~-~~~~~~~~i~~~g~~t~~~g~~~al~Q~d~KrllAYStisq~G~m~ 319 (619)
T PRK06590 243 -EGPTPVSALIHAATMVTAGVYLVARMS-PLFE-LSPEALHFVTIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMF 319 (619)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHEEHHHC-CCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -489846788728999998863110304-4511-2789999999999999999999999650268888977988999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH-HCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCC
Q ss_conf 33104875422102345554210233303567777642-00111100235565420233201345555301024443112
Q gi|254780866|r 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR-LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 (499)
Q Consensus 316 ~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~-~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~ 394 (499)
T Consensus 320 ~~~g~~---~~~~a~~h~~~Ha~~Ka~LFl~aG~vi~~~~~~~~~~~~gGl~~~mP~t~~~~~i~~lsl~G~Pp~~GF~s 396 (619)
T PRK06590 320 LALGVG---AYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGLPPFAGFFS 396 (619)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999987---88999999999999999999988899987432001876289400078999999999998614402206978
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2899999998659-999999999999999999999999728898765556878891268999999999999977248899
Q gi|254780866|r 395 EFLVIMSVFQNSN-TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 (499)
Q Consensus 395 k~~i~~~~~~~~~-~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~ 473 (499)
T Consensus 397 K~~i~~~~~~~~~~~~~~~~~~~~~~t~~y~~r~~~~~f~g~~r~~~~~~~HE~p~~M~~PLvILAilsi~~G~l~~~~~ 476 (619)
T PRK06590 397 KDEILEAAFANGHGFLFVAGLVGAFLTAFYSFRLIFLVFHGKERWHVDHHPHESPGVMTLPLIVLAVLSVFAGALLIPFI 476 (619)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999870573999999999999999999999997078999877667788862599989999999999999998744
Q ss_pred H
Q ss_conf 9
Q gi|254780866|r 474 D 474 (499)
Q Consensus 474 ~ 474 (499)
T Consensus 477 ~ 477 (619)
T PRK06590 477 V 477 (619)
T ss_pred H
T ss_conf 3