HHsearch alignment for GI: 254780866 and conserved domain: TIGR01770

>TIGR01770 NDH_I_N proton-translocating NADH-quinone oxidoreductase, chain N; InterPro: IPR010096 This entry describes the 14th (based on Escherichia coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This entry does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This entry also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.
Probab=100.00  E-value=0  Score=548.61  Aligned_cols=394  Identities=22%  Similarity=0.370  Sum_probs=346.7

Q ss_pred             EEEEHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEEC
Q ss_conf             65225889999999999999997520112---100235678999863024302654043311123431034312355312
Q gi|254780866|r   79 LGVDGISILLVVLTTFLTPFCILSSWKSI---QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW  155 (499)
Q Consensus        79 l~iD~ls~~f~~l~~~i~~l~~~ys~~~~---~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~  155 (499)
T Consensus        71 f~~D~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~~EF~~L~l~~~lG~~~~vS~~~Ll~~y~gLEl~SL~~Y~L~~~~  150 (491)
T TIGR01770        71 FIVDNFALLIKLILLLSTLLLFLLALSYLSKEKINKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAALK  150 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             66746899999999999999999874467751132047899999999999999999999999999999999999998632


Q ss_pred             C-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC---CCHH-------HHHHHHHHHHCCCCCCCC
Q ss_conf             3-4332321000113554455677666554432100010034432101---3303-------789999854103444554
Q gi|254780866|r  156 G-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK---FPFS-------IQYWMWIAFFCSFAIKIP  224 (499)
Q Consensus       156 ~-~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~---~~~~-------~~~~~~~ll~~g~~~K~~  224 (499)
T Consensus       151 r~s~~S~EAglKYfiLGa~sS~llLfG~sliYg~tG~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~G~~f~~~gl~FKl~  230 (491)
T TIGR01770       151 RKSEFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNLEKNISNILINSSLLLLGIVFILVGLLFKLS  230 (491)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf             11121235668999999999999999999999867677799999985211023430310488999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf             00023201010002222344333323223332111000011122331000000000122222122111000024432233
Q gi|254780866|r  225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA  304 (499)
Q Consensus       225 ~~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllA  304 (499)
T Consensus       231 avPFH~W~PDVYeGaP~~vt~f~s~vpKIa~f~~~~rl~~~~~~~~~~~~~~~~~~~a~~Sm~~G~~~Al~Q~~~KRlLA  310 (491)
T TIGR01770       231 AVPFHMWVPDVYEGAPTSVTAFFSIVPKIAIFAVLLRLFLYILFEFSAVWQIFLLIIAVLSMLIGNFGALAQKKVKRLLA  310 (491)
T ss_pred             HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             61333437864136549999999999999999999999988865334689999999999999999999973104037778


Q ss_pred             CCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH-------HHC---CCCCCHHHHHHHHHHCCCC
Q ss_conf             210013540233310487542210234555421023330356777764-------200---1111002355654202332
Q gi|254780866|r  305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD-------RLH---TRDIFAYGGLVHNMPRYAV  374 (499)
Q Consensus       305 ySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~-------~~g---~~~l~~l~Gl~~~~P~~~~  374 (499)
T Consensus       311 YSSI~H~Gy~l~~~~~~~~~g~~a~l~Y~~~Y~~~~~g~F~~l~~L~~~rnv~~~~~~~ry~~~~~~~~gL~~~~p~~A~  390 (491)
T TIGR01770       311 YSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLLLLRSIRNVYKKKDEERYIEYISDLAGLAKTNPLLAI  390 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             86799999999999973031489999999999999999999999983144420127762133328999989988299999


Q ss_pred             CHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCHH
Q ss_conf             0134555530102444311228999999986599-9999999999999999999999972889-8765556878891268
Q gi|254780866|r  375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-VAVLASFGVVLSALYSLWLYRKVVFGVS-KCEKVQQLKDLSLRER  452 (499)
Q Consensus       375 ~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~~~-~~~~~~~~~~ls~~~~l~~~~~~~~g~~-~~~~~~~~~~~~~~~~  452 (499)
T Consensus       391 ~~~i~~FSlaGIPP~aGF~~K~~vf~~~~~~~~~~L~~~~v~~S~~~~fYYlR~~k~myf~~~~~~~~~~~~~~~~~~~~  470 (491)
T TIGR01770       391 LILIILFSLAGIPPLAGFFGKFYVFFALLKSGLVLLAVIAVLISVISAFYYLRVVKVMYFDKPEVLERRIIIAPISKAQS  470 (491)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHH
T ss_conf             99999999630232689999999999999678155799999999999999999999998076421202321455542567


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999997724889
Q gi|254780866|r  453 CMVYPIAVLTVFFGIYPVPI  472 (499)
Q Consensus       453 ~~~~~l~~~~i~lGi~p~~~  472 (499)
T Consensus       471 ~~l~~~~~~~~~~gl~P~~~  490 (491)
T TIGR01770       471 LLLSITALFLVFLGLFPSLI  490 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999710114