HHsearch alignment for GI: 254780866 and conserved domain: TIGR01770
>TIGR01770 NDH_I_N proton-translocating NADH-quinone oxidoreductase, chain N; InterPro: IPR010096 This entry describes the 14th (based on Escherichia coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This entry does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This entry also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.
Probab=100.00 E-value=0 Score=548.61 Aligned_cols=394 Identities=22% Similarity=0.370 Sum_probs=346.7
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEEC
Q ss_conf 65225889999999999999997520112---100235678999863024302654043311123431034312355312
Q gi|254780866|r 79 LGVDGISILLVVLTTFLTPFCILSSWKSI---QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 (499)
Q Consensus 79 l~iD~ls~~f~~l~~~i~~l~~~ys~~~~---~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~ 155 (499)
T Consensus 71 f~~D~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~~EF~~L~l~~~lG~~~~vS~~~Ll~~y~gLEl~SL~~Y~L~~~~ 150 (491)
T TIGR01770 71 FIVDNFALLIKLILLLSTLLLFLLALSYLSKEKINKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAALK 150 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66746899999999999999999874467751132047899999999999999999999999999999999999998632
Q ss_pred C-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC---CCHH-------HHHHHHHHHHCCCCCCCC
Q ss_conf 3-4332321000113554455677666554432100010034432101---3303-------789999854103444554
Q gi|254780866|r 156 G-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK---FPFS-------IQYWMWIAFFCSFAIKIP 224 (499)
Q Consensus 156 ~-~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~---~~~~-------~~~~~~~ll~~g~~~K~~ 224 (499)
T Consensus 151 r~s~~S~EAglKYfiLGa~sS~llLfG~sliYg~tG~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~G~~f~~~gl~FKl~ 230 (491)
T TIGR01770 151 RKSEFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNLEKNISNILINSSLLLLGIVFILVGLLFKLS 230 (491)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 11121235668999999999999999999999867677799999985211023430310488999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 00023201010002222344333323223332111000011122331000000000122222122111000024432233
Q gi|254780866|r 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 (499)
Q Consensus 225 ~~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllA 304 (499)
T Consensus 231 avPFH~W~PDVYeGaP~~vt~f~s~vpKIa~f~~~~rl~~~~~~~~~~~~~~~~~~~a~~Sm~~G~~~Al~Q~~~KRlLA 310 (491)
T TIGR01770 231 AVPFHMWVPDVYEGAPTSVTAFFSIVPKIAIFAVLLRLFLYILFEFSAVWQIFLLIIAVLSMLIGNFGALAQKKVKRLLA 310 (491)
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 61333437864136549999999999999999999999988865334689999999999999999999973104037778
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH-------HHC---CCCCCHHHHHHHHHHCCCC
Q ss_conf 210013540233310487542210234555421023330356777764-------200---1111002355654202332
Q gi|254780866|r 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD-------RLH---TRDIFAYGGLVHNMPRYAV 374 (499)
Q Consensus 305 ySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~-------~~g---~~~l~~l~Gl~~~~P~~~~ 374 (499)
T Consensus 311 YSSI~H~Gy~l~~~~~~~~~g~~a~l~Y~~~Y~~~~~g~F~~l~~L~~~rnv~~~~~~~ry~~~~~~~~gL~~~~p~~A~ 390 (491)
T TIGR01770 311 YSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLLLLRSIRNVYKKKDEERYIEYISDLAGLAKTNPLLAI 390 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86799999999999973031489999999999999999999999983144420127762133328999989988299999
Q ss_pred CHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCHH
Q ss_conf 0134555530102444311228999999986599-9999999999999999999999972889-8765556878891268
Q gi|254780866|r 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-VAVLASFGVVLSALYSLWLYRKVVFGVS-KCEKVQQLKDLSLRER 452 (499)
Q Consensus 375 ~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~~~-~~~~~~~~~~ls~~~~l~~~~~~~~g~~-~~~~~~~~~~~~~~~~ 452 (499)
T Consensus 391 ~~~i~~FSlaGIPP~aGF~~K~~vf~~~~~~~~~~L~~~~v~~S~~~~fYYlR~~k~myf~~~~~~~~~~~~~~~~~~~~ 470 (491)
T TIGR01770 391 LILIILFSLAGIPPLAGFFGKFYVFFALLKSGLVLLAVIAVLISVISAFYYLRVVKVMYFDKPEVLERRIIIAPISKAQS 470 (491)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHH
T ss_conf 99999999630232689999999999999678155799999999999999999999998076421202321455542567
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999997724889
Q gi|254780866|r 453 CMVYPIAVLTVFFGIYPVPI 472 (499)
Q Consensus 453 ~~~~~l~~~~i~lGi~p~~~ 472 (499)
T Consensus 471 ~~l~~~~~~~~~~gl~P~~~ 490 (491)
T TIGR01770 471 LLLSITALFLVFLGLFPSLI 490 (491)
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999710114