HHsearch alignment for GI: 254780866 and conserved domain: TIGR01972

>TIGR01972 NDH_I_M proton-translocating NADH-quinone oxidoreductase, chain M; InterPro: IPR010227 This entry describes the 13th (based on Escherichia coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.
Probab=100.00  E-value=0  Score=785.50  Aligned_cols=481  Identities=51%  Similarity=0.941  Sum_probs=461.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCC-CCHHH---HHHHHHHHHHHHHHHHHHHHHH-HCCCCC--EEEEEEEEECCCC--CEE
Q ss_conf             8999999999999998720355-30357---9999999999999999999986-308888--1899986313485--405
Q gi|254780866|r    6 LSIVTFLPFLGVFVILFSSYLG-CGRRS---FFGVALGISTINFIFSLFVWSV-FDKGRS--SFQMIEYYHWIDY--FCS   76 (499)
Q Consensus         6 l~lii~lPll~~li~~~~~~~~-~~~~~---~~~i~~~~~~l~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~--~~~   76 (499)
T Consensus         1 Ls~~iflPligal~~l~~~~~~~~~~~~~~~~r~~Al~~~~~~l~l~~~l~~~~fD~~~~~~~fQ~~e~~~Wip~~lG~~   80 (532)
T TIGR01972         1 LSLLIFLPLIGALLILLLPRQNNKGKAREQAVRWIALVVALATLLLSLLLLFQEFDPTNSGPGFQFTESLPWIPADLGIS   80 (532)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCEE
T ss_conf             86999899999999998345677602589999999999999999999999860433456644401577311223455704


Q ss_pred             EEEEEEHHHHHHHHHHHHHHHHHHHHHCCC--CCC--HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEE
Q ss_conf             466522588999999999999999752011--210--0235678999863024302654043311123431034312355
Q gi|254780866|r   77 YHLGVDGISILLVVLTTFLTPFCILSSWKS--IQE--NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII  152 (499)
Q Consensus        77 ~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~--~~~--~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li  152 (499)
T Consensus        81 Y~lGVDGiSl~l~~LtaLlt~l~~~~~w~~R~i~k~g~~k~f~~~~L~le~~~~G~F~A~D~~LFY~FwE~~LiPmyllI  160 (532)
T TIGR01972        81 YHLGVDGISLLLVLLTALLTLLSILASWESREIQKEGRVKEFYALLLLLEAGVIGVFLALDLLLFYVFWEAMLIPMYLLI  160 (532)
T ss_pred             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             64203279999999999999999998654401047885799999999999999999999989999999999998899998


Q ss_pred             EECC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHH-CCCHHHHHHHHHHHHCCCC
Q ss_conf             3123-----4332321000113554455677666554432100------01003443210-1330378999985410344
Q gi|254780866|r  153 GVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK------TSSIIDLYAMS-KFPFSIQYWMWIAFFCSFA  220 (499)
Q Consensus       153 ~~~~-----~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~g------s~~~~~~~~~~-~~~~~~~~~~~~ll~~g~~  220 (499)
T Consensus       161 g~WGdka~~g~~R~yAA~KFfLYTl~GSvlML~a~l~l~~~~g~~~~~~tF~l~~l~~~~~~~~~~~q~~Lf~aFf~aFA  240 (532)
T TIGR01972       161 GVWGDKAEAGPNRIYAAMKFFLYTLAGSVLMLLAILGLYFLGGTQLLILTFDLAELLNQPVNLPLSVQTWLFLAFFIAFA  240 (532)
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             64110013646523788999999999999999999999998234111210342887402136419999999999999855


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCC
Q ss_conf             45540002320101000222234433332322333211100001112233100000000012222212211100002443
Q gi|254780866|r  221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK  300 (499)
Q Consensus       221 ~K~~~~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~K  300 (499)
T Consensus       241 vK~PlfPlHTWLPDAH~~Apt~gSV~LaGvLlK~G~YGflRf~LpLfPdas~~f~p~~~~L~~~~IiYgal~A~aQ~D~K  320 (532)
T TIGR01972       241 VKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAALAVIAIIYGALIALAQTDIK  320 (532)
T ss_pred             HCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             22477665334320310277468999999999888899999876544999999999999999999999999999986288


Q ss_pred             CCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH----HHHCCCCCH
Q ss_conf             2233210013540233310487542210234555421023330356777764200111100235565----420233201
Q gi|254780866|r  301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH----NMPRYAVVM  376 (499)
Q Consensus       301 rllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~----~~P~~~~~~  376 (499)
T Consensus       321 rLiAYSSiSHMGfV~LGifs~n~~G~~GA~~qM~~HGl~~a~LFl~vG~ly~R~hTr~i~~~GGl~~hp~~~mP~~~~f~  400 (532)
T TIGR01972       321 RLIAYSSISHMGFVLLGIFSFNELGISGAVLQMISHGLITAALFLLVGVLYDRAHTRDIAKYGGLANHPYRKMPVLAAFF  400 (532)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             99998635799999999997618899999999998669999999999999863243337862513430211114799999


Q ss_pred             HHHHHHHCCCHHHHHHCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CCC
Q ss_conf             3455553010244431122899999998-------6599999999999999999999999997288-----------987
Q gi|254780866|r  377 MVFTMANMGLPGTSGFIGEFLVIMSVFQ-------NSNTVAVLASFGVVLSALYSLWLYRKVVFGV-----------SKC  438 (499)
Q Consensus       377 ~i~~lsl~G~Pp~~GF~~k~~i~~~~~~-------~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~-----------~~~  438 (499)
T Consensus       401 ~~~~~As~GlPGt~GFvGEFl~l~G~f~~~~~S~P~~~~~~~~A~~G~vl~A~Y~L~~~~r~~fG~~~P~~~~~~~~~~~  480 (532)
T TIGR01972       401 MLFAMASLGLPGTSGFVGEFLILLGAFKSDILSFPVNPVVAFLAALGIVLTAAYMLWLYKRVFFGERKPDSLYLQDKISN  480 (532)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             99999733200003499999999854167766755189999999999999999999999998517987853121022002


Q ss_pred             ---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---655568788912689999999999999772488999999999999852
Q gi|254780866|r  439 ---EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN  486 (499)
Q Consensus       439 ---~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~~~~~~~~~~l~~~  486 (499)
T Consensus       481 ~~~~~~~~~~Dl~~rE~~~~~~lv~~~~~lGlyP~~~l~~~~~~v~~l~~~  531 (532)
T TIGR01972       481 ISDPEVAEFPDLNGREIAVLAPLVVLILFLGLYPKPLLDLIEPSVNNLLSQ  531 (532)
T ss_pred             CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             543134323675088999999999999999724568875578899999961