HHsearch alignment for GI: 254780866 and conserved domain: TIGR01972
>TIGR01972 NDH_I_M proton-translocating NADH-quinone oxidoreductase, chain M; InterPro: IPR010227 This entry describes the 13th (based on Escherichia coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.
Probab=100.00 E-value=0 Score=785.50 Aligned_cols=481 Identities=51% Similarity=0.941 Sum_probs=461.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCHHH---HHHHHHHHHHHHHHHHHHHHHH-HCCCCC--EEEEEEEEECCCC--CEE
Q ss_conf 8999999999999998720355-30357---9999999999999999999986-308888--1899986313485--405
Q gi|254780866|r 6 LSIVTFLPFLGVFVILFSSYLG-CGRRS---FFGVALGISTINFIFSLFVWSV-FDKGRS--SFQMIEYYHWIDY--FCS 76 (499)
Q Consensus 6 l~lii~lPll~~li~~~~~~~~-~~~~~---~~~i~~~~~~l~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~--~~~ 76 (499)
T Consensus 1 Ls~~iflPligal~~l~~~~~~~~~~~~~~~~r~~Al~~~~~~l~l~~~l~~~~fD~~~~~~~fQ~~e~~~Wip~~lG~~ 80 (532)
T TIGR01972 1 LSLLIFLPLIGALLILLLPRQNNKGKAREQAVRWIALVVALATLLLSLLLLFQEFDPTNSGPGFQFTESLPWIPADLGIS 80 (532)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCEE
T ss_conf 86999899999999998345677602589999999999999999999999860433456644401577311223455704
Q ss_pred EEEEEEHHHHHHHHHHHHHHHHHHHHHCCC--CCC--HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEE
Q ss_conf 466522588999999999999999752011--210--0235678999863024302654043311123431034312355
Q gi|254780866|r 77 YHLGVDGISILLVVLTTFLTPFCILSSWKS--IQE--NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 (499)
Q Consensus 77 ~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~--~~~--~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li 152 (499)
T Consensus 81 Y~lGVDGiSl~l~~LtaLlt~l~~~~~w~~R~i~k~g~~k~f~~~~L~le~~~~G~F~A~D~~LFY~FwE~~LiPmyllI 160 (532)
T TIGR01972 81 YHLGVDGISLLLVLLTALLTLLSILASWESREIQKEGRVKEFYALLLLLEAGVIGVFLALDLLLFYVFWEAMLIPMYLLI 160 (532)
T ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64203279999999999999999998654401047885799999999999999999999989999999999998899998
Q ss_pred EECC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHH-CCCHHHHHHHHHHHHCCCC
Q ss_conf 3123-----4332321000113554455677666554432100------01003443210-1330378999985410344
Q gi|254780866|r 153 GVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK------TSSIIDLYAMS-KFPFSIQYWMWIAFFCSFA 220 (499)
Q Consensus 153 ~~~~-----~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~g------s~~~~~~~~~~-~~~~~~~~~~~~ll~~g~~ 220 (499)
T Consensus 161 g~WGdka~~g~~R~yAA~KFfLYTl~GSvlML~a~l~l~~~~g~~~~~~tF~l~~l~~~~~~~~~~~q~~Lf~aFf~aFA 240 (532)
T TIGR01972 161 GVWGDKAEAGPNRIYAAMKFFLYTLAGSVLMLLAILGLYFLGGTQLLILTFDLAELLNQPVNLPLSVQTWLFLAFFIAFA 240 (532)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 64110013646523788999999999999999999999998234111210342887402136419999999999999855
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCC
Q ss_conf 45540002320101000222234433332322333211100001112233100000000012222212211100002443
Q gi|254780866|r 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 (499)
Q Consensus 221 ~K~~~~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~K 300 (499)
T Consensus 241 vK~PlfPlHTWLPDAH~~Apt~gSV~LaGvLlK~G~YGflRf~LpLfPdas~~f~p~~~~L~~~~IiYgal~A~aQ~D~K 320 (532)
T TIGR01972 241 VKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAALAVIAIIYGALIALAQTDIK 320 (532)
T ss_pred HCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22477665334320310277468999999999888899999876544999999999999999999999999999986288
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH----HHHCCCCCH
Q ss_conf 2233210013540233310487542210234555421023330356777764200111100235565----420233201
Q gi|254780866|r 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH----NMPRYAVVM 376 (499)
Q Consensus 301 rllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~----~~P~~~~~~ 376 (499)
T Consensus 321 rLiAYSSiSHMGfV~LGifs~n~~G~~GA~~qM~~HGl~~a~LFl~vG~ly~R~hTr~i~~~GGl~~hp~~~mP~~~~f~ 400 (532)
T TIGR01972 321 RLIAYSSISHMGFVLLGIFSFNELGISGAVLQMISHGLITAALFLLVGVLYDRAHTRDIAKYGGLANHPYRKMPVLAAFF 400 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99998635799999999997618899999999998669999999999999863243337862513430211114799999
Q ss_pred HHHHHHHCCCHHHHHHCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CCC
Q ss_conf 3455553010244431122899999998-------6599999999999999999999999997288-----------987
Q gi|254780866|r 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQ-------NSNTVAVLASFGVVLSALYSLWLYRKVVFGV-----------SKC 438 (499)
Q Consensus 377 ~i~~lsl~G~Pp~~GF~~k~~i~~~~~~-------~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~-----------~~~ 438 (499)
T Consensus 401 ~~~~~As~GlPGt~GFvGEFl~l~G~f~~~~~S~P~~~~~~~~A~~G~vl~A~Y~L~~~~r~~fG~~~P~~~~~~~~~~~ 480 (532)
T TIGR01972 401 MLFAMASLGLPGTSGFVGEFLILLGAFKSDILSFPVNPVVAFLAALGIVLTAAYMLWLYKRVFFGERKPDSLYLQDKISN 480 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 99999733200003499999999854167766755189999999999999999999999998517987853121022002
Q ss_pred ---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---655568788912689999999999999772488999999999999852
Q gi|254780866|r 439 ---EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 (499)
Q Consensus 439 ---~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~~~~~~~~~~l~~~ 486 (499)
T Consensus 481 ~~~~~~~~~~Dl~~rE~~~~~~lv~~~~~lGlyP~~~l~~~~~~v~~l~~~ 531 (532)
T TIGR01972 481 ISDPEVAEFPDLNGREIAVLAPLVVLILFLGLYPKPLLDLIEPSVNNLLSQ 531 (532)
T ss_pred CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 543134323675088999999999999999724568875578899999961