HHsearch alignment for GI: 254780866 and conserved domain: pfam00361

>pfam00361 Oxidored_q1 NADH-Ubiquinone/plastoquinone (complex I), various chains. This family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.
Probab=100.00  E-value=0  Score=464.38  Aligned_cols=268  Identities=37%  Similarity=0.677  Sum_probs=249.8

Q ss_pred             ECCCCCHHHHHHHCCCCCEEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
Q ss_conf             404331112343103431235531234-3323210001135544556776665544321000100344321013303789
Q gi|254780866|r  131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY  209 (499)
Q Consensus       131 s~dl~~l~v~~El~~l~~~~Li~~~~~-~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~  209 (499)
T Consensus         1 s~dl~~~~v~~El~~l~~y~Li~~~~~~~~~~~Aa~ky~i~~~~~s~~lL~gi~~ly~~~gt~~~~~~~~~~-~~~~~~~   79 (270)
T pfam00361         1 SNNLLLFYLGWELLGLPSYLLIGFWGYSPRSLEASLKYFLYTALGSLFLLFGILYIYGLTGSLSFTLLFLFG-LNSNGLL   79 (270)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC-CCCHHHH
T ss_conf             974999999999999999999883499999999999999999999999999999999986222699998643-5634899


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf             99985410344455400023201010002222344333323223332111000011122331000000000122222122
Q gi|254780866|r  210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA  289 (499)
Q Consensus       210 ~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g  289 (499)
T Consensus        80 ~~~~l~~~g~~~K~~~~PfH~Wlpday~~ap~~~s~~ls~v~~~~g~~~l~r~~~~~~--~~~~~~~~l~~~~~~s~i~g  157 (270)
T pfam00361        80 LLSLLLLVAFLVKSPQFPFHFWLPDAHEGPPPVSSLILATTLKKAGLYLLLRLSNLFS--SSNLISYILLILGILSMLLG  157 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999948624755778857998789999998999999999999998613--23789999999999999999


Q ss_pred             CCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             11100002443223321001354023331048754221023455542102333035677776420011110023556542
Q gi|254780866|r  290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM  369 (499)
Q Consensus       290 ~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~  369 (499)
T Consensus       158 ~~~Al~Q~dlKrllAYSSis~~G~il~~~~~~~~~~~~~~~~~~i~h~~~k~~lF~~~g~i~~~~~~~~i~~l~Gl~~~~  237 (270)
T pfam00361       158 SLGALNQTDLKKLIAYSSISHMGFVMMGILSLGSYGIIGAIIHLISHGFFSALLFLLAGLIIHRSGTRDLRNYGGLFNSM  237 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHH
T ss_conf             99998330277999999999999999999986577999999999999999999999999999875887099870969882


Q ss_pred             HCCCCCHHHHHHHHCCCHHHHHHCCHHHHHHH
Q ss_conf             02332013455553010244431122899999
Q gi|254780866|r  370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS  401 (499)
Q Consensus       370 P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~  401 (499)
T Consensus       238 P~~~~~~~i~~lsl~GiPp~~GF~~K~~i~~s  269 (270)
T pfam00361       238 PILALLLLLLLLSLMGLPPLLGFISKFLILES  269 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999877576038899999864