BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus str. psy62] (499 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus str. psy62] gi|254040543|gb|ACT57339.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus str. psy62] Length = 499 Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/499 (100%), Positives = 499/499 (100%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS Sbjct: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV Sbjct: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF Sbjct: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP Sbjct: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK Sbjct: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF Sbjct: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS Sbjct: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL Sbjct: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 Query: 481 SSIIENYTLKTGYSDSVKG 499 SSIIENYTLKTGYSDSVKG Sbjct: 481 SSIIENYTLKTGYSDSVKG 499 >gi|315122713|ref|YP_004063202.1| NADH dehydrogenase subunit M [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496115|gb|ADR52714.1| NADH dehydrogenase subunit M [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 491 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/486 (79%), Positives = 448/486 (92%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+LPFLSI+TF PF+GV ++ +SYLGC RRSF G+ALG S INF+FSLFVW++F++ S Sbjct: 1 MDLPFLSIITFTPFIGVLLLFLASYLGCERRSFLGIALGTSIINFVFSLFVWAIFNQNNS 60 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQMIEYYHWIDYFC YHLGVDGISILLVVLT FLTPFCILSSW+S+QE F+EYMIAFL+ Sbjct: 61 GFQMIEYYHWIDYFCDYHLGVDGISILLVVLTAFLTPFCILSSWESVQERFKEYMIAFLI 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LESM IGAFLSLD++LFYIFFEASLIPMF+IIGVWGG+ER+YAAYKFFLYTFFGS+FML Sbjct: 121 LESMTIGAFLSLDIVLFYIFFEASLIPMFIIIGVWGGNERVYAAYKFFLYTFFGSVFMLL 180 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+VMCW+KKT+SIIDLYA S FP SIQ W+W+AFF SFAIKIPMFPFHTWLP+AHVQAP Sbjct: 181 AIMVMCWDKKTTSIIDLYASSSFPMSIQCWLWLAFFISFAIKIPMFPFHTWLPSAHVQAP 240 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSVFLAGIMLKMGGYGC+RFLLPLFPLAS+YF+P+I LS+I+IIYASLV+MVQ DIK Sbjct: 241 TAGSVFLAGIMLKMGGYGCLRFLLPLFPLASKYFSPLILILSVISIIYASLVAMVQRDIK 300 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSSIAHMGYVTIGIFSG++SGVEGAMFQMLSHGLVSSALFF +G++YDRLHTRD++ Sbjct: 301 KLIAYSSIAHMGYVTIGIFSGIRSGVEGAMFQMLSHGLVSSALFFSIGILYDRLHTRDLY 360 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGLV NMPRYAVVMMVFTMAN+GLPGTSGFIGEFL+I+S F N N +AV ASFGVVLS Sbjct: 361 AYGGLVRNMPRYAVVMMVFTMANIGLPGTSGFIGEFLIIVSAFFNHNMIAVFASFGVVLS 420 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 ALYSLW YRK+VFGVS+ E+V+++KDLSLRERC+VYPIAVL VFFGIY +P+ DTF++ + Sbjct: 421 ALYSLWFYRKIVFGVSEREEVKKIKDLSLRERCIVYPIAVLIVFFGIYTIPVFDTFALTI 480 Query: 481 SSIIEN 486 SSI++ Sbjct: 481 SSIVKT 486 >gi|222085589|ref|YP_002544119.1| NADH-ubiquinone oxidoreductase chain M protein [Agrobacterium radiobacter K84] gi|221723037|gb|ACM26193.1| NADH-ubiquinone oxidoreductase chain M protein [Agrobacterium radiobacter K84] Length = 512 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 299/497 (60%), Positives = 388/497 (78%), Gaps = 2/497 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLG-CGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +GV ++LF G GRR+ V+L + FI SLF+W FD Sbjct: 12 DWPILSTVTFLPLVGVLILLFMRDDGPNGRRNILNVSLLTTVFTFIVSLFIWIGFDNANP 71 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQMIE + W+ SYHLGVDGIS+L V+L+TFL PFC+L+SW S+++ ++YMIAFLV Sbjct: 72 GFQMIEKHGWLGTGISYHLGVDGISMLFVILSTFLMPFCVLASWLSVEKRLKDYMIAFLV 131 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+M+IG F+SLD++LFY+FFEA LIPMF+IIGVWGG +R+YA+YKFFLYT GS+ ML Sbjct: 132 LETMMIGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLL 191 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T+ I L A KFP +Q W+W+AFF SFA+K+PM+P HTWLP+AHVQAP Sbjct: 192 AIMAMYWQAGTTDIPALLAY-KFPPHMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAP 250 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG IRF L +FP AS+YFAP++F +S+IAIIY SLV+++Q DIK Sbjct: 251 TAGSVILAGILLKLGGYGLIRFSLGMFPNASEYFAPLVFAMSVIAIIYTSLVALMQEDIK 310 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMGYVT+GIF+ + GV+GA+FQMLSHG+VS ALF CVGVIYDR HTR+I Sbjct: 311 KLIAYSSVAHMGYVTMGIFAANQQGVQGAIFQMLSHGIVSGALFLCVGVIYDRTHTREIA 370 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGLV+NMP+YAV MMVFTMAN+GLPGTSGFIGEFL ++ VF+ + VA+ A+ GV+LS Sbjct: 371 AYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILS 430 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYR+V+FG + E +++L DLS RE+ ++YP+ LT+ FG+YP PI D + + Sbjct: 431 AAYALWLYRRVIFGALEKENLKKLLDLSPREQLILYPLIALTILFGVYPAPIFDATAASV 490 Query: 481 SSIIENYTLKTGYSDSV 497 ++ NYT + +V Sbjct: 491 DLLVNNYTAALHAAQNV 507 >gi|327188500|gb|EGE55714.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli CNPAF512] Length = 503 Score = 618 bits (1594), Expect = e-175, Method: Compositional matrix adjust. Identities = 292/497 (58%), Positives = 385/497 (77%), Gaps = 2/497 (0%) Query: 2 NLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP GV ++L + GR++ G++L + FI SL +W FD Sbjct: 3 DWPILSTVTFLPLAGVVLLLLMNGESESGRKNVLGISLITTVFTFIVSLVIWIGFDNANP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM + + W+ YH+GVDGIS+L V+LTTFL PFC+L+SW SI++ +EYM+AFL+ Sbjct: 63 GFQMEQKFDWLGTGIGYHVGVDGISMLFVILTTFLMPFCVLASWLSIEKRLKEYMVAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+M+IG F+SLD++LFY+FFEA LIPMF+IIGVWGG +R+YA+YKFFLYT GS+ ML Sbjct: 123 LETMMIGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLL 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T+ I L A KFP ++Q W+W+AFF SFA+K+PM+P HTWLP+AHVQAP Sbjct: 183 AIMAMYWQAGTTDITALLAY-KFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG++LK+GGYG IRF L +FP+AS YFAP++F LS+IAIIY SLV+M+Q DIK Sbjct: 242 TAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFALSVIAIIYTSLVAMMQDDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMGYVT+GIF+ GV+G++FQMLSHG+VS ALF CVGV+YDR HTR+I Sbjct: 302 KLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREIN 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGLV+NMP+YAV MMVFTMAN+GLPGTSGFIGEFL ++ VF+ + VA+ A+ GV+LS Sbjct: 362 AYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYR+V+FG + EK++ L DLS RE+ ++YP+ LT+FFG+YP P+ D + + Sbjct: 422 AAYALWLYRRVIFGALEKEKLKALLDLSPREQLILYPLVALTIFFGVYPAPVFDATAASV 481 Query: 481 SSIIENYTLKTGYSDSV 497 ++ NYT + +V Sbjct: 482 DLLVNNYTAAVHAAQNV 498 >gi|190891299|ref|YP_001977841.1| NADH-ubiquinone oxidoreductase, chain M [Rhizobium etli CIAT 652] gi|190696578|gb|ACE90663.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli CIAT 652] Length = 503 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 290/488 (59%), Positives = 381/488 (78%), Gaps = 2/488 (0%) Query: 2 NLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP GV ++L + GR++ ++L + FI SL +W FD Sbjct: 3 DWPILSTVTFLPLAGVVLLLLMNGESESGRKNVLWISLITTVFTFIVSLVIWIGFDNANP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM + ++W+ YH+GVDGIS+L V+L+TFL PFC+L+SW SI++ +EYMIAFL+ Sbjct: 63 GFQMEQKFNWLGTGIGYHVGVDGISMLFVILSTFLMPFCVLASWLSIEKRLKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+M+IG F+SLD++LFY+FFEA LIPMF+IIGVWGG +R+YA+YKFFLYT GS+ ML Sbjct: 123 LETMMIGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLL 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T+ I L A KFP ++Q W+W+AFF SFA+K+PM+P HTWLP+AHVQAP Sbjct: 183 AIMAMYWQAGTTDITALLAY-KFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG++LK+GGYG IRF L +FP+AS YFAP +F LS+IAIIY SLV+M+Q DIK Sbjct: 242 TAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPFVFALSVIAIIYTSLVAMMQDDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMGYVT+GIF+ GV+G++FQMLSHG+VS ALF CVGV+YDR HTR+I Sbjct: 302 KLIAYSSVAHMGYVTMGIFAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREIN 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGLV+NMP+YAV MMVFTMAN+GLPGTSGFIGEFL ++ VF+ + VA+ A+ GV+LS Sbjct: 362 AYGGLVNNMPKYAVAMMVFTMANVGLPGTSGFIGEFLTLIGVFRVNTWVALFAATGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYR+V+FG + EK++ L DLS RE+ ++YP+ LT+FFG+YP P+ D + + Sbjct: 422 AAYALWLYRRVIFGALEKEKLKALLDLSRREQLILYPLVALTIFFGVYPAPVFDATAASV 481 Query: 481 SSIIENYT 488 ++ NYT Sbjct: 482 DLLVNNYT 489 >gi|222148287|ref|YP_002549244.1| NADH dehydrogenase subunit M [Agrobacterium vitis S4] gi|221735275|gb|ACM36238.1| NADH dehydrogenase I chain M [Agrobacterium vitis S4] Length = 512 Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust. Identities = 291/497 (58%), Positives = 378/497 (76%), Gaps = 2/497 (0%) Query: 2 NLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +GV ++L + GRR+ ++L + FI SLF+W FD Sbjct: 12 DWPILSTVTFLPLVGVALLLLMNGDTPSGRRNVLNISLLTTVATFIVSLFIWIGFDNANP 71 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E + W+ +YHLGVDGIS+L VVLT FL PFC+L+SW S+Q+ +EYMIAFL+ Sbjct: 72 GFQMVENHPWLGTGIAYHLGVDGISMLFVVLTAFLMPFCVLASWTSVQKRIKEYMIAFLI 131 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE M+IG F+SLD++LFY+FFEA LIPMF+IIGVWGG +R+YA+YKFFLYT GS+ M+ Sbjct: 132 LEVMMIGVFVSLDIVLFYVFFEAGLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVLMML 191 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T+ I L A KFP +Q +W+AFF SFA+K+PM+P HTWLP+AHVQAP Sbjct: 192 AIMAMYWDAGTTDIAALLA-HKFPPHLQTVLWLAFFASFAVKMPMWPVHTWLPDAHVQAP 250 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGIMLK+GGYG IRF L +FPLAS YFAP +F LS+IAIIY SLV+++Q D+K Sbjct: 251 TAGSVILAGIMLKLGGYGFIRFSLAMFPLASDYFAPAVFALSVIAIIYTSLVALMQEDMK 310 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSSIAHMGYVT+GIF+ G++GA+FQM+SHG VS ALF CVGVIYDR+HTR+I Sbjct: 311 KLIAYSSIAHMGYVTMGIFAANTQGLQGAVFQMISHGFVSGALFLCVGVIYDRMHTREIV 370 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGL +NMP+YA+ M+FTMAN+GLPGTSGFIGEFL ++ F+ ++ VA+ A+ GV+LS Sbjct: 371 AYGGLANNMPKYALAFMIFTMANVGLPGTSGFIGEFLTLIGAFRANSWVALFAATGVILS 430 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYR+VVFG E ++ L DLS RE+ +YP+ LT+ FG+YP PI D + + Sbjct: 431 AAYALWLYRRVVFGALDKESLKALLDLSFREKVTLYPLIALTILFGVYPAPIFDVTTASV 490 Query: 481 SSIIENYTLKTGYSDSV 497 +++ NYT + +V Sbjct: 491 DALLNNYTAALQAAQNV 507 >gi|90417831|ref|ZP_01225743.1| NADH dehydrogenase I, M subunit [Aurantimonas manganoxydans SI85-9A1] gi|90337503|gb|EAS51154.1| NADH dehydrogenase I, M subunit [Aurantimonas manganoxydans SI85-9A1] Length = 502 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 294/496 (59%), Positives = 382/496 (77%), Gaps = 2/496 (0%) Query: 4 PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS VTFLP +G +ILF RR+ VAL + F+ SL++W FD + F Sbjct: 5 PILSTVTFLPLVGALLILFIRDDSELARRNIRNVALLTTLFTFVVSLWIWIDFDNSNAGF 64 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 QM+E W+ +YH+GVDGIS+L V+LTTFL PFCIL+S++S+Q +EYMIAFLVLE Sbjct: 65 QMVERLDWLGGGITYHMGVDGISMLFVILTTFLMPFCILASFESVQTRVKEYMIAFLVLE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++V+G F +LD++LFYIFFE LIPMF+IIGVWGG RIYA+YKFFLYTF GS+ ML AI Sbjct: 125 TLVVGVFCALDIVLFYIFFEGGLIPMFLIIGVWGGKRRIYASYKFFLYTFLGSVLMLVAI 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + M W TSSI +L A FP S+Q W+W AFF SFA+K+PM+P HTWLP+AHV+APTA Sbjct: 185 MTMFWTAGTSSIPELLAY-DFPASMQTWLWFAFFASFAVKMPMWPVHTWLPDAHVEAPTA 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LAGI+LK+GGYG +RF LP+FPLAS FAP++F LS++AIIY SLV+++Q DIKKL Sbjct: 244 GSVILAGILLKLGGYGFLRFSLPMFPLASAEFAPLVFTLSVVAIIYTSLVALMQQDIKKL 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHMG+VT+GIF+ + GVEGA+FQMLSHGLVS ALF CVGV+YDR+HTR+I AY Sbjct: 304 IAYSSVAHMGFVTMGIFAANQQGVEGAIFQMLSHGLVSGALFLCVGVVYDRMHTREIAAY 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGLV+ MP YA M++FTMAN+GLPGTSGF+GEFL ++ VFQ ++ VA+ A+ GV+LSA Sbjct: 364 GGLVNRMPHYAAAMLIFTMANVGLPGTSGFVGEFLTLIGVFQVNSWVAIFAATGVILSAA 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y+LWLYR+VVFG + E ++ + DLS RE+ ++YP+ VL +FFG+YP+P+ D + + S Sbjct: 424 YALWLYRRVVFGALEKESLRSILDLSGREKILLYPLIVLVIFFGVYPMPVFDVTAASVES 483 Query: 483 IIENYTLKTGYSDSVK 498 ++ YT + SV Sbjct: 484 MVNRYTAAIEAASSVA 499 >gi|110633388|ref|YP_673596.1| NADH dehydrogenase subunit M [Mesorhizobium sp. BNC1] gi|110284372|gb|ABG62431.1| NADH dehydrogenase subunit M [Chelativorans sp. BNC1] Length = 501 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 293/486 (60%), Positives = 377/486 (77%), Gaps = 2/486 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCG-RRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +G F+IL G G RR+ VAL + FI SLF+W FD Sbjct: 3 DWPILSTVTFLPLVGAFLILLIRDDGQGARRNIRNVALLTTVFTFILSLFIWIGFDYTTP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+D SYH+GVDGIS+L V+LTTFL PFCIL+SW++I +EYMIAFL+ Sbjct: 63 GFQMVEKREWLDSGISYHMGVDGISMLFVILTTFLMPFCILASWEAIDSRVKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD++LFY+FFEA LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML Sbjct: 123 LETLMIGVFCALDIVLFYVFFEAGLIPMFIIIGVWGGKRRVYASFKFFLYTLAGSVLMLL 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ M W+ T+ I L + FP +QYW+WIAFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AMMAMFWQSGTTDIPTLLTHA-FPVQMQYWLWIAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LKMGGYG +RF LP+FP AS FAP +F LS++AIIY SLV+M+Q DIK Sbjct: 242 TAGSVILAGILLKMGGYGFLRFSLPMFPEASAEFAPFVFTLSVVAIIYTSLVAMMQDDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMG+VT+GIF+ + GV+GA+FQMLSHGLVS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSVAHMGFVTMGIFAMNEQGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIS 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGLV+NMP+YAV MVFTMAN+GLPGTSGF+GEFL + + FQ + VA A+ GVVLS Sbjct: 362 AYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGEFLTLFAAFQVNTWVAFFATTGVVLS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYR+V+FG E ++ L DLSLRE+ ++YP+ L +FFG+YP + DT + + Sbjct: 422 AAYALWLYRRVIFGALTKESLKGLTDLSLREKTILYPLVALVIFFGVYPSALIDTTTASV 481 Query: 481 SSIIEN 486 S+++++ Sbjct: 482 SALLDH 487 >gi|319782994|ref|YP_004142470.1| proton-translocating NADH-quinone oxidoreductase, chain M [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168882|gb|ADV12420.1| proton-translocating NADH-quinone oxidoreductase, chain M [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 501 Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust. Identities = 287/494 (58%), Positives = 384/494 (77%), Gaps = 2/494 (0%) Query: 4 PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS+VTFLP +GV +ILF + RR+ +AL +T FI SLF+W+ FD +S F Sbjct: 5 PILSLVTFLPLVGVLLILFINDDSENARRNIRAIALLTTTFTFIISLFIWTGFDNSQSGF 64 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E W+D SYH+GVDGIS+L V+LTTFL P CIL+SW+SI++ + YMIAFL+LE Sbjct: 65 QFVEKVAWLDSGISYHMGVDGISMLFVILTTFLMPLCILASWESIEKRVKAYMIAFLLLE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +++IG F +LD++LFY+FFEA LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML AI Sbjct: 125 TLMIGVFCALDIVLFYVFFEAGLIPMFIIIGVWGGKRRVYASFKFFLYTLAGSVLMLLAI 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + M ++ T+ I L FP ++Q W+W+AFF SFA+K+PM+P HTWLP+AHV+APTA Sbjct: 185 MAMFFQSGTTDIPTLLT-HNFPANMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTA 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LAGI+LKMGGYG +RF LP+FPLAS+ FAP++F LS++AIIY SLV+++Q D+KKL Sbjct: 244 GSVILAGILLKMGGYGLLRFSLPMFPLASEMFAPLVFALSVVAIIYTSLVALMQEDMKKL 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHMG+VT+GIF+ + GV+GA+FQMLSHGLVS ALF CVGVIYDR+HTR+I AY Sbjct: 304 IAYSSVAHMGFVTMGIFAMNQEGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIAAY 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGLV+NMP+YA V ++FTMAN+GLPGTSGF+GEFL ++ VF+ + VA A+ GV+LSA Sbjct: 364 GGLVNNMPKYATVFLIFTMANVGLPGTSGFVGEFLTMLGVFRVNTWVAFFAATGVILSAA 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y+LWLYR+V+FG E ++ L DLS RE+ ++YP+ VL +FFG+YP P+ D + + S Sbjct: 424 YALWLYRRVIFGALTKESLKGLLDLSPREKVIIYPLVVLVIFFGVYPAPVFDATAQSVKS 483 Query: 483 IIENYTLKTGYSDS 496 ++ N G + + Sbjct: 484 LVTNVAASIGAAQT 497 >gi|260462244|ref|ZP_05810488.1| proton-translocating NADH-quinone oxidoreductase, chain M [Mesorhizobium opportunistum WSM2075] gi|259032104|gb|EEW33371.1| proton-translocating NADH-quinone oxidoreductase, chain M [Mesorhizobium opportunistum WSM2075] Length = 501 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 287/497 (57%), Positives = 385/497 (77%), Gaps = 2/497 (0%) Query: 4 PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS+VTFLP +GV +ILF + RR+ +AL +T FI SLF+W+ FD ++ F Sbjct: 5 PILSLVTFLPLVGVLLILFINDDSENARRNIRAIALLTTTFTFIISLFIWTGFDNSQAGF 64 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E W+D SYH+GVDGIS+L V+LTTFL P CIL+SW+SI++ + YM+AFL+LE Sbjct: 65 QFVEKAAWLDSGISYHMGVDGISMLFVILTTFLMPLCILASWESIEKRVKAYMVAFLLLE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +++IG F +LD++LFY+FFEA LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML AI Sbjct: 125 TLMIGVFCALDIVLFYVFFEAGLIPMFIIIGVWGGKRRVYASFKFFLYTLAGSVLMLLAI 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + M ++ T+ I L S FP ++Q W+W+AFF SFA+K+PM+P HTWLP+AHV+APTA Sbjct: 185 MAMFYQSGTTDIPTLLTHS-FPANMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTA 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LA I+LKMGGYG +RF LP+FPLAS+ FAP++F LS++AIIY SLV+++Q D+KKL Sbjct: 244 GSVILAAILLKMGGYGFLRFSLPMFPLASEMFAPLVFTLSVVAIIYTSLVALMQEDMKKL 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHMG+VT+GIF+ + GV+GA+FQMLSHGLVS ALF CVGVIYDR+HTR+I AY Sbjct: 304 IAYSSVAHMGFVTMGIFAMNQEGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIDAY 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGLV+NMP+YA V MVFTMAN+GLPGTSGF+GEFL ++ VF+ + VA A+ GV+LSA Sbjct: 364 GGLVNNMPKYATVFMVFTMANVGLPGTSGFVGEFLTMLGVFRVNTWVAFFAATGVILSAA 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y+LWLYR+V+FG + ++ L DLS RE+ ++YP+ VL +FFG+YP P+ D + + S Sbjct: 424 YALWLYRRVIFGALTKDSLKGLLDLSPREKAIIYPLVVLVIFFGVYPAPVFDATAQSVKS 483 Query: 483 IIENYTLKTGYSDSVKG 499 ++ N T G + + Sbjct: 484 LVTNVTASIGAAQTAAA 500 >gi|13471394|ref|NP_102960.1| NADH dehydrogenase subunit M [Mesorhizobium loti MAFF303099] gi|14022136|dbj|BAB48746.1| NADH-ubiquinone dehydrogenase chain 13 [Mesorhizobium loti MAFF303099] Length = 501 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 287/494 (58%), Positives = 384/494 (77%), Gaps = 2/494 (0%) Query: 4 PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS+VTFLP +GV +ILF RR+ +AL +T FI S+F+W+ FD +S F Sbjct: 5 PILSLVTFLPLVGVLLILFIRDDSENARRNIRAIALLTTTFTFIISVFIWTGFDNSQSGF 64 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E W+D SYH+GVDGIS+L V+LTTFL P CIL+SW++I++ + YMIAFL+LE Sbjct: 65 QFVEKAAWLDSGISYHMGVDGISMLFVILTTFLMPLCILASWEAIEKRVKAYMIAFLLLE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +++IG F +LD++LFY+FFEA LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML AI Sbjct: 125 TLMIGVFCALDIVLFYVFFEAGLIPMFIIIGVWGGKRRVYASFKFFLYTLAGSVLMLLAI 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + M ++ T+ I L S FP ++Q W+W+AFF SFA+K+PM+P HTWLP+AHV+APTA Sbjct: 185 MAMFYQSGTTDIPTLLTHS-FPANMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTA 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LA I+LKMGGYG +RF LP+FPLAS+ FAP++F LS++AIIY SLV+++Q D+KKL Sbjct: 244 GSVILAAILLKMGGYGFLRFSLPMFPLASEMFAPLVFTLSVVAIIYTSLVALMQDDMKKL 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHMG+VT+GIF+ + GV+GA+FQMLSHGLVS ALF CVGVIYDR+HTR+I AY Sbjct: 304 IAYSSVAHMGFVTMGIFAMNQEGVQGAIFQMLSHGLVSGALFLCVGVIYDRMHTREIAAY 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGLV+NMP+YA V MVFTMAN+GLPGTSGF+GEFL ++ VF+ + VA A+ GV+LSA Sbjct: 364 GGLVNNMPKYATVFMVFTMANVGLPGTSGFVGEFLTMLGVFRVNTWVAFFAATGVILSAA 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y+LWLYR+V+FG + ++ L DLSLRE+ ++YP+ L +FFG+YP P+ D + + S Sbjct: 424 YALWLYRRVIFGALTKDSLKGLLDLSLREKVIIYPLVALVIFFGVYPAPVFDATAQSVKS 483 Query: 483 IIENYTLKTGYSDS 496 ++ N T G + + Sbjct: 484 LVTNVTASIGAAQT 497 >gi|15965031|ref|NP_385384.1| NADH dehydrogenase subunit M [Sinorhizobium meliloti 1021] gi|307301103|ref|ZP_07580872.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium meliloti BL225C] gi|307317837|ref|ZP_07597275.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium meliloti AK83] gi|15074210|emb|CAC45857.1| Probable NADH dehydrogenase I chain M transmembrane protein [Sinorhizobium meliloti 1021] gi|306896599|gb|EFN27347.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium meliloti AK83] gi|306904058|gb|EFN34644.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium meliloti BL225C] Length = 503 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 287/487 (58%), Positives = 378/487 (77%), Gaps = 2/487 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGC-GRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTF+P +GV ++L + GRR+ V+L + F+ SL++W FD Sbjct: 3 DWPVLSAVTFMPLVGVLLLLLTREDSAYGRRNILNVSLLTTVFTFLVSLYIWYQFDPSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYHLGVDGISIL V LT FL PFC+L+SW +I++ +EYMIAFL+ Sbjct: 63 GFQMVEKREWLGTGISYHLGVDGISILFVPLTAFLMPFCVLASWVTIEKRLKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE++++G F+SLD++LFY+FFEA LIPMF+IIGVWGG ER+YA+YKFFLYT GS+ ML Sbjct: 123 LETLMLGVFVSLDIILFYVFFEAGLIPMFIIIGVWGGKERVYASYKFFLYTLLGSVLMLL 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ M W+ T+ I L A +FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHVQAP Sbjct: 183 AMMAMYWQAGTTDITQLLAY-QFPREMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG +RF LP+FPLAS +FAP +F LS+IAIIY SLV+M+QTDIK Sbjct: 242 TAGSVILAGILLKLGGYGFLRFSLPMFPLASDFFAPFVFTLSIIAIIYTSLVAMMQTDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMGYVT+G F+ GV+GA+FQMLSHG+VS ALF CVGV+YDRLHTR+I Sbjct: 302 KLIAYSSVAHMGYVTMGTFAANVQGVQGAIFQMLSHGIVSGALFLCVGVVYDRLHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGLV+NMP+YAV MVFTMAN+GLPGTSGF+GE L ++ F+ + VA+ A+ GV+LS Sbjct: 362 AYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGEVLTLVGAFRANTWVALFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYR+V+FG + E ++ L DLS RE+ ++YP+ +LT+FFG+YP P+ D + + Sbjct: 422 AAYALWLYRRVIFGALEKESLKALLDLSAREKLILYPLVILTIFFGVYPAPVFDATAASV 481 Query: 481 SSIIENY 487 ++ NY Sbjct: 482 DLLVNNY 488 >gi|209548876|ref|YP_002280793.1| NADH dehydrogenase subunit M [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534632|gb|ACI54567.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 503 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 281/461 (60%), Positives = 367/461 (79%), Gaps = 1/461 (0%) Query: 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISIL 87 GR++ ++L + FI SLF+W FD FQM+E + W+ YHLGVDGIS+L Sbjct: 30 TGRKNVLWISLITTVFTFIVSLFIWIGFDNANPGFQMLEKHDWLGTGIGYHLGVDGISML 89 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 V+L+TFL PFC+L+SW SI++ +EYMIAFL+LE+M++G F+SLD++LFY+FFEA LIP Sbjct: 90 FVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETMMVGVFVSLDIVLFYVFFEAGLIP 149 Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 MF+IIGVWGG +R+YA+YKFFLYT GS+ ML AI+ M W+ T+ I L A KFP ++ Sbjct: 150 MFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAY-KFPPAL 208 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA+K+PM+P HTWLP+AHVQAPTAGSV LAG++LK+GGYG IRF L +F Sbjct: 209 QTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMF 268 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P+AS YFAP +F LS+IAIIY SLV+M+Q DIKKLIAYSS+AHMGYVT+GIF+ GV+ Sbjct: 269 PVASDYFAPFVFALSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQ 328 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 G++FQMLSHG+VS ALF CVGV+YDR HTR+I AYGGLV+NMP+YAV MMVFTMAN+GLP Sbjct: 329 GSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLP 388 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDL 447 GTSGFIGEFL ++ VF+ + VA+ A+ GV+LSA Y+LWLYR+V+FG + EK++ L DL Sbjct: 389 GTSGFIGEFLTLLGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDL 448 Query: 448 SLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 S RE+ ++YP+ LT+FFG+YP P+ D + + ++ NYT Sbjct: 449 SRREQLILYPLVALTIFFGVYPAPVFDATAASVDLLVNNYT 489 >gi|150396125|ref|YP_001326592.1| NADH dehydrogenase subunit M [Sinorhizobium medicae WSM419] gi|150027640|gb|ABR59757.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium medicae WSM419] Length = 503 Score = 604 bits (1558), Expect = e-171, Method: Compositional matrix adjust. Identities = 289/488 (59%), Positives = 378/488 (77%), Gaps = 2/488 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGC-GRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTF+P +GV ++L + GRR+ V+L + F+ SL+VW FD Sbjct: 3 DWPVLSAVTFMPLVGVLLLLLTREDSAYGRRNILNVSLLTTIFTFLVSLYVWYQFDPSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQMIE W+ SYHLGVDGISIL V LT FL PFC+L+SW +I++ +EYMIAFL+ Sbjct: 63 GFQMIEKREWLGAGISYHLGVDGISILFVPLTAFLMPFCVLASWVTIEKRLKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE++++G F+SLD++LFY+FFEA LIPMF+IIGVWGG ER+YA+YKFFLYT GS+ ML Sbjct: 123 LETLMLGVFVSLDIILFYVFFEAGLIPMFIIIGVWGGKERVYASYKFFLYTLLGSVLMLL 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ M W+ T+ I L A +FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHVQAP Sbjct: 183 AMMAMYWQAGTTDITQLLAY-QFPRQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG +RF LP+FPLAS +FAP +F LS+IAIIY SLV+M+QTDIK Sbjct: 242 TAGSVILAGILLKLGGYGFLRFSLPMFPLASDFFAPFVFTLSVIAIIYTSLVAMMQTDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMGYVT+G F+ GV+GA+FQMLSHG+VS ALF CVGV+YDRLHTR+I Sbjct: 302 KLIAYSSVAHMGYVTMGTFAANVQGVQGAIFQMLSHGIVSGALFLCVGVVYDRLHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGLV+NMP+YAV MVFTMAN+GLPGTSGF+GE L ++ F+ + VA+ A+ GV+LS Sbjct: 362 AYGGLVNNMPKYAVAFMVFTMANVGLPGTSGFVGEVLTLVGAFRANTWVALFATSGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYR+V+FG + E ++ L DLS RE+ ++YP+ +LT+FFG+YP P+ D + + Sbjct: 422 AAYALWLYRRVIFGALEKESLKALLDLSPREKLILYPLVILTIFFGVYPAPVFDATAASV 481 Query: 481 SSIIENYT 488 ++ NY Sbjct: 482 DLLVNNYA 489 >gi|86357251|ref|YP_469143.1| NADH dehydrogenase subunit M [Rhizobium etli CFN 42] gi|86281353|gb|ABC90416.1| NADH-ubiquinone oxidoreductase chain M protein [Rhizobium etli CFN 42] Length = 503 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 280/470 (59%), Positives = 371/470 (78%), Gaps = 1/470 (0%) Query: 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISIL 87 GRR+ ++L + F+ SLF+W FD FQM+E + W+ YH+GVDGIS+L Sbjct: 30 SGRRNVLWISLITTVFTFVVSLFIWIGFDNANPGFQMLEKHDWLGTGIGYHVGVDGISML 89 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 V+L+TFL PFC+L+SW SI++ +EYMIAFL+LE+M++G F+SLD++LFY+FFEA LIP Sbjct: 90 FVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETMMVGVFVSLDIVLFYVFFEAGLIP 149 Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 MF+IIGVWGG +R+YA+YKFFLYT GS+ ML AI+ M W+ T+ I L A KFP ++ Sbjct: 150 MFLIIGVWGGRDRVYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAY-KFPPAL 208 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA+K+PM+P HTWLP+AHVQAPTAGSV LAG++LK+GGYG IRF L +F Sbjct: 209 QTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMF 268 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P+AS YFAP++F +S+IAIIY SLV+M+Q DIKKLIAYSS+AHMGYVT+GIF+ GV+ Sbjct: 269 PVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQ 328 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 G++FQMLSHG+VS ALF CVGV+YDR HTR+I AYGGLV+NMP+YAV MMVFTMAN+GLP Sbjct: 329 GSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLP 388 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDL 447 GTSGFIGEFL ++ VF+ + VA+ A+ GV+LSA Y+LWLYR+V+FG + EK++ L DL Sbjct: 389 GTSGFIGEFLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDL 448 Query: 448 SLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSV 497 S RE+ ++YP+ LT+FFG+YP P+ D + + ++ NYT + +V Sbjct: 449 SRREQLILYPLVALTIFFGVYPAPVFDATAASVDLLVNNYTAAVHAAQNV 498 >gi|241204100|ref|YP_002975196.1| NADH dehydrogenase subunit M [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857990|gb|ACS55657.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 503 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 280/470 (59%), Positives = 371/470 (78%), Gaps = 1/470 (0%) Query: 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISIL 87 GR++ ++L + F+ SLF+W FD FQM+E + W+ YHLGVDGIS+L Sbjct: 30 TGRKNVLWISLITTVFTFVVSLFIWIGFDNANPGFQMLEKHDWLGTGIGYHLGVDGISML 89 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 V+L+TFL PFC+L+SW SI++ +EYMIAFL+LE+M+IG F+SLD++LFY+FFEA LIP Sbjct: 90 FVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETMMIGVFVSLDIVLFYVFFEAGLIP 149 Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 MF+IIGVWGG +R+YA+YKFFLYT GS+ ML AI+ M W+ T+ I L A KFP ++ Sbjct: 150 MFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAY-KFPPAL 208 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA+K+PM+P HTWLP+AHVQAPTAGSV LAG++LK+GGYG IRF L +F Sbjct: 209 QTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMF 268 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P+AS YFAP++F LS++AIIY SLV+M+Q DIKKLIAYSS+AHMGYVT+GIF+ GV+ Sbjct: 269 PVASDYFAPLVFALSVMAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQ 328 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 G++FQMLSHG+VS ALF CVGV+YDR HTR+I AYGGLV+NMP+YAV MMVFTMAN+GLP Sbjct: 329 GSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLP 388 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDL 447 GTSGF+GEFL ++ VF+ + VA+ A+ GV+LSA Y+LWLYR+V+FG + EK++ L DL Sbjct: 389 GTSGFVGEFLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDL 448 Query: 448 SLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSV 497 S RE+ ++YP+ LT+FFG+YP P+ D + + ++ NYT + +V Sbjct: 449 SPREQLILYPLVALTIFFGVYPAPVFDATAASVDLLVNNYTAAVHAAQNV 498 >gi|116251479|ref|YP_767317.1| NADH dehydrogenase subunit M [Rhizobium leguminosarum bv. viciae 3841] gi|115256127|emb|CAK07208.1| putative NADH-ubiquinone oxidoreductase subunit M [Rhizobium leguminosarum bv. viciae 3841] Length = 503 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 278/470 (59%), Positives = 371/470 (78%), Gaps = 1/470 (0%) Query: 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISIL 87 GR++ ++L + F+ SL +W FD FQM+E ++W+ YH+GVDGIS+L Sbjct: 30 TGRKNVLWISLITTVFTFVVSLVIWIGFDNANPGFQMVEKHNWLGTGIGYHVGVDGISML 89 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 V+L+TFL PFC+L+SW SI++ +EYMIAFL+LE+M+IG F+SLD++LFY+FFEA LIP Sbjct: 90 FVILSTFLMPFCVLASWLSIEKRLKEYMIAFLILETMMIGVFVSLDIVLFYVFFEAGLIP 149 Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 MF+IIGVWGG +R+YA+YKFFLYT GS+ ML AI+ M W+ T+ I L A KFP ++ Sbjct: 150 MFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLAY-KFPPAL 208 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA+K+PM+P HTWLP+AHVQAPTAGSV LAG++LK+GGYG IRF L +F Sbjct: 209 QTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMF 268 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P+AS YFAP++F +S+IAIIY SLV+M+Q DIKKLIAYSS+AHMGYVT+GIF+ GV+ Sbjct: 269 PVASDYFAPLVFAMSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANMQGVQ 328 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 G++FQMLSHG+VS ALF CVGV+YDR HTR+I AYGGLV+NMP+YAV MMVFTMAN+GLP Sbjct: 329 GSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMVFTMANVGLP 388 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDL 447 GTSGF+GEFL ++ VF+ + VA+ A+ GV+LSA Y+LWLYR+V+FG + EK++ L DL Sbjct: 389 GTSGFVGEFLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEKEKLKALLDL 448 Query: 448 SLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSV 497 S RE+ ++YP+ LT+FFG+YP P+ D + + ++ NYT + +V Sbjct: 449 SPREQLILYPLVALTIFFGVYPAPVFDATAASVDLLVNNYTAAVHAAQNV 498 >gi|114707381|ref|ZP_01440278.1| NADH dehydrogenase subunit M [Fulvimarina pelagi HTCC2506] gi|114537262|gb|EAU40389.1| NADH dehydrogenase subunit M [Fulvimarina pelagi HTCC2506] Length = 502 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 286/495 (57%), Positives = 381/495 (76%), Gaps = 2/495 (0%) Query: 4 PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS VTFLP +G F+IL RR+ VAL + F+ SL++W FD + F Sbjct: 5 PILSTVTFLPLVGAFLILLIQDDNELARRNIRNVALLTTVFTFVVSLWIWGEFDYQTTGF 64 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E W+ +YH+GVDGIS+L V+LTTFL P CIL+S++S++ +EYMIAFLVLE Sbjct: 65 QFVEQAEWLGTGITYHMGVDGISMLFVILTTFLMPLCILASFESVKTRVKEYMIAFLVLE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++VIG F +LD++LFYIFFE LIPMF+IIGVWGG RIYA+YKFFLYTF GS+ ML A+ Sbjct: 125 TLVIGVFCALDLILFYIFFEGGLIPMFLIIGVWGGKRRIYASYKFFLYTFLGSVLMLVAM 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + M W T+SI +L A FP S+Q W+W AFF SFA+K+PM+P HTWLP+AHV+APTA Sbjct: 185 MAMYWNAGTTSIPELLA-HDFPASMQAWLWFAFFASFAVKMPMWPVHTWLPDAHVEAPTA 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LAGI+LK+GGYG +RF LP+FP+AS FAP ++ LS+IAIIY SLV+++Q DIKKL Sbjct: 244 GSVILAGILLKLGGYGFLRFSLPMFPIASADFAPFVYSLSVIAIIYTSLVALMQEDIKKL 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHMG+VT+GIF+ G++GA+FQMLSHGL+S ALF CVGV+YDR+HTR+I AY Sbjct: 304 IAYSSVAHMGFVTMGIFAANAQGLQGAIFQMLSHGLISGALFLCVGVVYDRMHTREITAY 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGLV+ MP+YAV M++FTMAN+GLPGTSGF+GEFL ++ VFQ ++ VA+ A+ GV+LSA Sbjct: 364 GGLVNRMPKYAVAMLIFTMANVGLPGTSGFVGEFLTLLGVFQVNSWVAIFAATGVILSAA 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y+LWLYR+V+FG + E ++Q+ DLS RE+ ++YP+ VL +FFG+YP+P+ D + + + Sbjct: 424 YALWLYRRVIFGALEKESLRQILDLSRREKALLYPLVVLVIFFGVYPMPVFDVTAASVEN 483 Query: 483 IIENYTLKTGYSDSV 497 +I Y+ + SV Sbjct: 484 LINTYSAGLEAAQSV 498 >gi|163759528|ref|ZP_02166613.1| NADH dehydrogenase subunit M [Hoeflea phototrophica DFL-43] gi|162283125|gb|EDQ33411.1| NADH dehydrogenase subunit M [Hoeflea phototrophica DFL-43] Length = 503 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 289/488 (59%), Positives = 374/488 (76%), Gaps = 2/488 (0%) Query: 2 NLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS+VTF+P + V F++ GRR+ VAL +T FI SL +W+ FD Sbjct: 3 DWPLLSVVTFIPLICVLFLLPIKDDTEIGRRNIRQVALLGTTATFIMSLLIWANFDYADP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E SY +GVDGIS+L V+LTTFL P CIL+SW S++ REYMIAFLV Sbjct: 63 GFQMVENIELAGSGFSYAMGVDGISMLFVILTTFLMPLCILASWNSVETRVREYMIAFLV 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+M+IG F +LD++LFYIFFEA LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML Sbjct: 123 LETMMIGVFCALDIVLFYIFFEAGLIPMFIIIGVWGGKRRVYASFKFFLYTLAGSVLMLL 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T+ I L A FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMFWDAGTTDIRALLA-HNFPAEMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG +RF LP+FPLAS FAP IF LS++AIIY SLV+++Q DIK Sbjct: 242 TAGSVILAGILLKLGGYGFLRFSLPMFPLASADFAPFIFVLSVVAIIYTSLVALMQEDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMG+VT+GIF+ + GV+GA+FQMLSHGL+S ALF CVGV+YDR+HTR+I Sbjct: 302 KLIAYSSVAHMGFVTMGIFAANQLGVQGAIFQMLSHGLISGALFLCVGVVYDRMHTREIS 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGLV+NMP+YAVV M+FTMAN+GLPGTSGF+GEF+ ++ VFQ + VA+ A+ GV+LS Sbjct: 362 AYGGLVNNMPKYAVVFMIFTMANVGLPGTSGFVGEFMTLIGVFQANTWVALFAATGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYR+VVFG + E ++ + DLS RE+ ++YP+ L +FFG YP PI D + + Sbjct: 422 AAYALWLYRRVVFGALEKESLKAMLDLSGREKAIIYPLVALVIFFGFYPAPILDVTAASV 481 Query: 481 SSIIENYT 488 ++I NYT Sbjct: 482 DALINNYT 489 >gi|306841948|ref|ZP_07474626.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella sp. BO2] gi|306287981|gb|EFM59389.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella sp. BO2] Length = 502 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 287/487 (58%), Positives = 376/487 (77%), Gaps = 2/487 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +G +IL RR+ VAL + FI SL VW+ FD Sbjct: 3 DWPILSTVTFLPLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYH+GVDGIS+L VVL+ FL PFCIL+SW S+++ +EYMIAFL+ Sbjct: 63 GFQMVEELDWMGSGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD+ LFY+FFEASLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LETLMIGVFCALDLFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLI 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T +I++L + FP S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWQAGTMNIVELLQYN-FPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG IRF LP+FPLAS FAP IF LS++AIIY SLV+MVQ D+K Sbjct: 242 TAGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM YVT+GIF+ + G++GA+FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAV ++FTMAN+GLPGTSGFIGEFL + VF+ + VA+ A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYRKV+FG E ++ L DLS RE+ ++YP+ LT+FFG+YP P+ + + + Sbjct: 422 AAYALWLYRKVIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNVTAGAV 481 Query: 481 SSIIENY 487 +++I++Y Sbjct: 482 NALIQHY 488 >gi|17987429|ref|NP_540063.1| NADH dehydrogenase subunit M [Brucella melitensis bv. 1 str. 16M] gi|23501701|ref|NP_697828.1| NADH dehydrogenase subunit M [Brucella suis 1330] gi|163843087|ref|YP_001627491.1| NADH dehydrogenase subunit M [Brucella suis ATCC 23445] gi|225852330|ref|YP_002732563.1| NADH dehydrogenase subunit M [Brucella melitensis ATCC 23457] gi|254701582|ref|ZP_05163410.1| NADH dehydrogenase subunit M [Brucella suis bv. 5 str. 513] gi|254706970|ref|ZP_05168798.1| NADH dehydrogenase subunit M [Brucella pinnipedialis M163/99/10] gi|254709922|ref|ZP_05171733.1| NADH dehydrogenase subunit M [Brucella pinnipedialis B2/94] gi|254713923|ref|ZP_05175734.1| NADH dehydrogenase subunit M [Brucella ceti M644/93/1] gi|254717019|ref|ZP_05178830.1| NADH dehydrogenase subunit M [Brucella ceti M13/05/1] gi|256031415|ref|ZP_05445029.1| NADH dehydrogenase subunit M [Brucella pinnipedialis M292/94/1] gi|256044493|ref|ZP_05447397.1| NADH dehydrogenase subunit M [Brucella melitensis bv. 1 str. Rev.1] gi|256060926|ref|ZP_05451084.1| NADH dehydrogenase subunit M [Brucella neotomae 5K33] gi|256264171|ref|ZP_05466703.1| NADH-ubiquinone oxidoreductase [Brucella melitensis bv. 2 str. 63/9] gi|256369246|ref|YP_003106754.1| NADH dehydrogenase subunit M [Brucella microti CCM 4915] gi|260563847|ref|ZP_05834333.1| NADH-ubiquinone oxidoreductase [Brucella melitensis bv. 1 str. 16M] gi|261218826|ref|ZP_05933107.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti M13/05/1] gi|261314433|ref|ZP_05953630.1| proton-translocating NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10] gi|261317468|ref|ZP_05956665.1| proton-translocating NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94] gi|261321675|ref|ZP_05960872.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti M644/93/1] gi|261324926|ref|ZP_05964123.1| proton-translocating NADH-quinone oxidoreductase [Brucella neotomae 5K33] gi|261752135|ref|ZP_05995844.1| proton-translocating NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513] gi|265988504|ref|ZP_06101061.1| proton-translocating NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1] gi|265990917|ref|ZP_06103474.1| proton-translocating NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1] gi|294852171|ref|ZP_06792844.1| NADH dehydrogenase I subunit M [Brucella sp. NVSL 07-0026] gi|306843751|ref|ZP_07476350.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella sp. BO1] gi|17983121|gb|AAL52327.1| NADH-quinone oxidoreductase chain m [Brucella melitensis bv. 1 str. 16M] gi|23347624|gb|AAN29743.1| NADH dehydrogenase I, M subunit [Brucella suis 1330] gi|163673810|gb|ABY37921.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella suis ATCC 23445] gi|225640695|gb|ACO00609.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella melitensis ATCC 23457] gi|255999406|gb|ACU47805.1| NADH dehydrogenase subunit M [Brucella microti CCM 4915] gi|260153863|gb|EEW88955.1| NADH-ubiquinone oxidoreductase [Brucella melitensis bv. 1 str. 16M] gi|260923915|gb|EEX90483.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti M13/05/1] gi|261294365|gb|EEX97861.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti M644/93/1] gi|261296691|gb|EEY00188.1| proton-translocating NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94] gi|261300906|gb|EEY04403.1| proton-translocating NADH-quinone oxidoreductase [Brucella neotomae 5K33] gi|261303459|gb|EEY06956.1| proton-translocating NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10] gi|261741888|gb|EEY29814.1| proton-translocating NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513] gi|263001701|gb|EEZ14276.1| proton-translocating NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1] gi|263094389|gb|EEZ18234.1| NADH-ubiquinone oxidoreductase [Brucella melitensis bv. 2 str. 63/9] gi|264660701|gb|EEZ30962.1| proton-translocating NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1] gi|294820760|gb|EFG37759.1| NADH dehydrogenase I subunit M [Brucella sp. NVSL 07-0026] gi|306275942|gb|EFM57655.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella sp. BO1] gi|326408837|gb|ADZ65902.1| NADH dehydrogenase subunit M [Brucella melitensis M28] gi|326538553|gb|ADZ86768.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella melitensis M5-90] Length = 502 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 287/487 (58%), Positives = 376/487 (77%), Gaps = 2/487 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +G +IL RR+ VAL + FI SL VW+ FD Sbjct: 3 DWPILSTVTFLPLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYH+GVDGIS+L VVL+ FL PFCIL+SW S+++ +EYMIAFL+ Sbjct: 63 GFQMVEELDWMGSGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD+ LFY+FFEASLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LETLMIGVFCALDLFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLI 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T +I++L + FP S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWQAGTMNIVELLQYN-FPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG IRF LP+FPLAS FAP IF LS++AIIY SLV+MVQ D+K Sbjct: 242 TAGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM YVT+GIF+ + G++GA+FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAV ++FTMAN+GLPGTSGFIGEFL + VF+ + VA+ A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYRKV+FG E ++ L DLS RE+ ++YP+ LT+FFG+YP P+ + + + Sbjct: 422 AAYALWLYRKVIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAV 481 Query: 481 SSIIENY 487 +++I++Y Sbjct: 482 NALIQHY 488 >gi|153009739|ref|YP_001370954.1| NADH dehydrogenase subunit M [Ochrobactrum anthropi ATCC 49188] gi|151561627|gb|ABS15125.1| proton-translocating NADH-quinone oxidoreductase, chain M [Ochrobactrum anthropi ATCC 49188] Length = 502 Score = 598 bits (1541), Expect = e-169, Method: Compositional matrix adjust. Identities = 285/487 (58%), Positives = 376/487 (77%), Gaps = 2/487 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +G +IL RR+ VAL + FI SL +W+ FD Sbjct: 3 DWPILSTVTFLPLVGALLILLIKDDSEASRRNIRNVALLTTIFVFILSLVIWAGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYH+GVDGIS+L VVL+ FL PFCIL+SW S+++ +EYMIAFL+ Sbjct: 63 GFQMVEQIDWMGGGISYHMGVDGISVLFVVLSAFLMPFCILASWISVEKRVKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD+ LFY+FFEASLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LETLMIGVFCALDLFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLI 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T +I++L S FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWQAGTMNIVELQKYS-FPAGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG +RF LP+FPLAS FAP+IF LS+IAIIY SLV++VQ DIK Sbjct: 242 TAGSVILAGILLKLGGYGFLRFSLPMFPLASADFAPLIFTLSVIAIIYTSLVALVQEDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM YVT+GIF+ + G++GA+FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSVAHMAYVTMGIFAANEQGIQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAV ++FTMAN+GLPGTSGF+GEFL + VF+ + VA+ A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVAFLIFTMANVGLPGTSGFLGEFLTLFGVFRVNTWVALFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYR+VVFG E ++ L DLS RE+ ++YP+ LT+FFG+YP P+ D + + Sbjct: 422 AAYALWLYRQVVFGALTKESLKALLDLSPREKIILYPLVALTIFFGVYPTPVFDVTAGAV 481 Query: 481 SSIIENY 487 ++++++Y Sbjct: 482 NALVQHY 488 >gi|254718923|ref|ZP_05180734.1| NADH dehydrogenase subunit M [Brucella sp. 83/13] gi|265983910|ref|ZP_06096645.1| proton-translocating NADH-quinone oxidoreductase [Brucella sp. 83/13] gi|306838229|ref|ZP_07471081.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella sp. NF 2653] gi|264662502|gb|EEZ32763.1| proton-translocating NADH-quinone oxidoreductase [Brucella sp. 83/13] gi|306406673|gb|EFM62900.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella sp. NF 2653] Length = 502 Score = 598 bits (1541), Expect = e-169, Method: Compositional matrix adjust. Identities = 287/487 (58%), Positives = 375/487 (77%), Gaps = 2/487 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +G +IL RR+ VAL + FI SL VW+ FD Sbjct: 3 DWPILSTVTFLPLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYH+GVDGIS+L VVL+ FL PFCIL+SW S+++ +EYMIAFL+ Sbjct: 63 GFQMVEELDWMGSGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD+ LFY+FFEASLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LETLMIGVFCALDLFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLI 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T +I++L + FP S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWQAGTMNIVELLQYN-FPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG IRF LP+FPLAS FAP IF LS++AIIY SLV+MVQ D+K Sbjct: 242 TAGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM YVT+GIF+ + G++GA+FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAV ++FTMAN+GLPGTSGFIGEFL + VF+ + VA+ A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYRKV+FG E ++ L DLS RE+ ++YP+ LT+FFG+YP P+ + + + Sbjct: 422 AAYALWLYRKVIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAV 481 Query: 481 SSIIENY 487 +++I +Y Sbjct: 482 NALIRHY 488 >gi|15888611|ref|NP_354292.1| NADH dehydrogenase subunit M [Agrobacterium tumefaciens str. C58] gi|15156333|gb|AAK87077.1| NADH dehydrogenase I chain M [Agrobacterium tumefaciens str. C58] Length = 503 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 286/497 (57%), Positives = 382/497 (76%), Gaps = 2/497 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGC-GRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +GV ++L ++ G GRR+ V+L + FI SLFVW FD Sbjct: 3 DWPILSTVTFLPLVGVVLLLLTNENGPYGRRNILNVSLLTTVFTFIVSLFVWIGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E + W +YHLGVDGIS+L V+LTTFL PFC+L+SW SI++ +EYMIAFL+ Sbjct: 63 GFQMVEKHAWFGKIAAYHLGVDGISMLFVILTTFLMPFCVLASWNSIEKRVKEYMIAFLL 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE +++G F++LD +LFY+FFEA+LIPMF+IIGVWGG +R+YA+YKFFLYT GS+ + Sbjct: 123 LEVVMVGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVLTML 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T+ + +L FP +Q W+W+A F +F++K+PM+P HTWLP+AHVQAP Sbjct: 183 AIMAMYWQSGTTDMTELLKYG-FPAGMQTWLWLACFAAFSVKMPMWPVHTWLPDAHVQAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG+MLK+GGYG IRF L +FPLAS YFAP +F LS++AIIY SLV+M+Q DIK Sbjct: 242 TAGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVFTLSVLAIIYTSLVAMMQDDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMGYVT+GIF+ GV+GA+FQMLSHG+VS ALF CVGV+YDRLHTR+I Sbjct: 302 KLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGIVSGALFLCVGVVYDRLHTREIS 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGLV+NMP+YAV M+FTMAN+GLPGTSGF+GEFL ++ VF+ + VA+ A+ GV+LS Sbjct: 362 AYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGEFLTLIGVFRANTLVALFAATGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYR+V+FG + E ++ + DLS RE+ ++YP+ LT+FFG+YP P+ D + + Sbjct: 422 AAYALWLYRRVIFGALEKESLKSMLDLSTREKVILYPLVALTIFFGVYPAPVFDATAASV 481 Query: 481 SSIIENYTLKTGYSDSV 497 ++ NYT + +V Sbjct: 482 DLLVNNYTAALQAAQNV 498 >gi|325292646|ref|YP_004278510.1| NADH dehydrogenase I chain M [Agrobacterium sp. H13-3] gi|325060499|gb|ADY64190.1| NADH dehydrogenase I chain M [Agrobacterium sp. H13-3] Length = 503 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 285/497 (57%), Positives = 383/497 (77%), Gaps = 2/497 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGC-GRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +GV ++L ++ G GRR+ V+L + F+ SLFVW FD Sbjct: 3 DWPILSTVTFLPLVGVVLLLLTNENGPYGRRNILNVSLLTTVFTFLVSLFVWIGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E + W +YHLGVDGIS+L V+LTTFL PFC+L+SW+S+++ +EYMIAFL+ Sbjct: 63 GFQMVEKHAWFGNIAAYHLGVDGISMLFVILTTFLMPFCVLASWQSVEKRIKEYMIAFLL 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE ++IG F++LD +LFY+FFEA+LIPMF+IIGVWGG +R+YA+YKFFLYT GS+ + Sbjct: 123 LEVVMIGVFVALDTVLFYVFFEATLIPMFIIIGVWGGKDRVYASYKFFLYTLLGSVLTML 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T+ + +L FP +Q W+W+A F +F++K+PM+P HTWLP+AHVQAP Sbjct: 183 AIMAMYWQSGTTDMTELLKYG-FPAGMQTWLWLACFAAFSVKMPMWPVHTWLPDAHVQAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG+MLK+GGYG IRF L +FPLAS YFAP +F LS++AIIY SLV+M+Q DIK Sbjct: 242 TAGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFAPFVFTLSVLAIIYTSLVAMMQDDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMGYVT+GIF+ GV+GA+FQMLSHG+VS ALF CVGV+YDRLHTR+I Sbjct: 302 KLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQMLSHGIVSGALFLCVGVVYDRLHTREIS 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGLV+NMP+YAV M+FTMAN+GLPGTSGF+GEFL ++ VF+ + VA+ A+ GV+LS Sbjct: 362 AYGGLVNNMPKYAVAFMIFTMANVGLPGTSGFVGEFLTLIGVFRANTLVALFAATGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYR+V+FG + E ++ + DLS RE+ ++YP+ LT+FFG+YP P+ D + + Sbjct: 422 AAYALWLYRRVIFGALEKESLKSMLDLSTREKVILYPLVALTIFFGVYPAPVFDATAASV 481 Query: 481 SSIIENYTLKTGYSDSV 497 ++ NYT + +V Sbjct: 482 DLLVNNYTAALQAAQNV 498 >gi|256159536|ref|ZP_05457304.1| NADH dehydrogenase subunit M [Brucella ceti M490/95/1] gi|256254823|ref|ZP_05460359.1| NADH dehydrogenase subunit M [Brucella ceti B1/94] gi|261222004|ref|ZP_05936285.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti B1/94] gi|265997968|ref|ZP_06110525.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti M490/95/1] gi|260920588|gb|EEX87241.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti B1/94] gi|262552436|gb|EEZ08426.1| proton-translocating NADH-quinone oxidoreductase [Brucella ceti M490/95/1] Length = 502 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 286/487 (58%), Positives = 375/487 (77%), Gaps = 2/487 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +G +IL RR+ VAL + FI SL VW+ FD Sbjct: 3 DWPILSTVTFLPLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYH+GVDGIS+L VVL+ FL PFCIL+SW S+++ +EYMIAFL+ Sbjct: 63 GFQMVEELDWMGSGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD+ LFY+FFEASLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LETLMIGVFCALDLFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLI 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T +I++L + FP S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWQAGTMNIVELLQYN-FPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG IRF LP+FPLAS FAP IF LS++AIIY SLV+MVQ D+K Sbjct: 242 TAGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM YVT+GIF+ + G++GA+FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 +GGLV+NMP+YAV ++FTMAN+GLPGTSGFIGEFL + VF+ + VA+ A+ GV+LS Sbjct: 362 VFGGLVNNMPKYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYRKV+FG E ++ L DLS RE+ ++YP+ LT+FFG+YP P+ + + + Sbjct: 422 AAYALWLYRKVIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAV 481 Query: 481 SSIIENY 487 +++I++Y Sbjct: 482 NALIQHY 488 >gi|256113349|ref|ZP_05454207.1| NADH dehydrogenase subunit M [Brucella melitensis bv. 3 str. Ether] gi|265994755|ref|ZP_06107312.1| proton-translocating NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether] gi|262765868|gb|EEZ11657.1| proton-translocating NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether] Length = 502 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 287/487 (58%), Positives = 375/487 (77%), Gaps = 2/487 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +G +IL RR+ VAL + FI SL VW+ FD Sbjct: 3 DWPILSTVTFLPLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYH+GVDGIS+L VVL+ FL PFCIL+SW S+++ +EYMIAFL+ Sbjct: 63 GFQMVEELDWMGSGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD+ LFY FFEASLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LETLMIGVFCALDLFLFYAFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLI 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T +I++L + FP S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWQAGTMNIVELLQYN-FPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG IRF LP+FPLAS FAP IF LS++AIIY SLV+MVQ D+K Sbjct: 242 TAGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM YVT+GIF+ + G++GA+FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAV ++FTMAN+GLPGTSGFIGEFL + VF+ + VA+ A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYRKV+FG E ++ L DLS RE+ ++YP+ LT+FFG+YP P+ + + + Sbjct: 422 AAYALWLYRKVIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAV 481 Query: 481 SSIIENY 487 +++I++Y Sbjct: 482 NALIQHY 488 >gi|225627311|ref|ZP_03785348.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella ceti str. Cudo] gi|260168549|ref|ZP_05755360.1| NADH dehydrogenase subunit M [Brucella sp. F5/99] gi|261758022|ref|ZP_06001731.1| NADH-ubiquinone oxidoreductase [Brucella sp. F5/99] gi|225617316|gb|EEH14361.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella ceti str. Cudo] gi|261738006|gb|EEY26002.1| NADH-ubiquinone oxidoreductase [Brucella sp. F5/99] Length = 502 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 286/487 (58%), Positives = 375/487 (77%), Gaps = 2/487 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS TFLP +G +IL RR+ VAL + FI SL VW+ FD Sbjct: 3 DWPILSTATFLPLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYH+GVDGIS+L VVL+ FL PFCIL+SW S+++ +EYMIAFL+ Sbjct: 63 GFQMVEELDWMGSGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD+ LFY+FFEASLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LETLMIGVFCALDLFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLI 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T +I++L + FP S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWQAGTMNIVELLQYN-FPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG IRF LP+FPLAS FAP IF LS++AIIY SLV+MVQ D+K Sbjct: 242 TAGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM YVT+GIF+ + G++GA+FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAV ++FTMAN+GLPGTSGFIGEFL + VF+ + VA+ A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYRKV+FG E ++ L DLS RE+ ++YP+ LT+FFG+YP P+ + + + Sbjct: 422 AAYALWLYRKVIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAV 481 Query: 481 SSIIENY 487 +++I++Y Sbjct: 482 NALIQHY 488 >gi|62289763|ref|YP_221556.1| NADH dehydrogenase subunit M [Brucella abortus bv. 1 str. 9-941] gi|82699691|ref|YP_414265.1| NADH dehydrogenase subunit M [Brucella melitensis biovar Abortus 2308] gi|189024008|ref|YP_001934776.1| NADH dehydrogenase subunit M [Brucella abortus S19] gi|237815250|ref|ZP_04594248.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus str. 2308 A] gi|254689070|ref|ZP_05152324.1| NADH dehydrogenase subunit M [Brucella abortus bv. 6 str. 870] gi|254697204|ref|ZP_05159032.1| NADH dehydrogenase subunit M [Brucella abortus bv. 2 str. 86/8/59] gi|254730100|ref|ZP_05188678.1| NADH dehydrogenase subunit M [Brucella abortus bv. 4 str. 292] gi|256257319|ref|ZP_05462855.1| NADH dehydrogenase subunit M [Brucella abortus bv. 9 str. C68] gi|260545487|ref|ZP_05821228.1| NADH-ubiquinone oxidoreductase [Brucella abortus NCTC 8038] gi|260754568|ref|ZP_05866916.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260757789|ref|ZP_05870137.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260761614|ref|ZP_05873957.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260883595|ref|ZP_05895209.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68] gi|297248168|ref|ZP_06931886.1| NADH dehydrogenase I subunit M [Brucella abortus bv. 5 str. B3196] gi|62195895|gb|AAX74195.1| NuoM, NADH dehydrogenase I, M subunit [Brucella abortus bv. 1 str. 9-941] gi|82615792|emb|CAJ10790.1| NADH/Ubiquinone/plastoquinone (complex I):NADH-ubiquinone oxidoreductase, chain 4 [Brucella melitensis biovar Abortus 2308] gi|189019580|gb|ACD72302.1| NADH-ubiquinone oxidoreductase, chain 4 [Brucella abortus S19] gi|237790087|gb|EEP64297.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella abortus str. 2308 A] gi|260096894|gb|EEW80769.1| NADH-ubiquinone oxidoreductase [Brucella abortus NCTC 8038] gi|260668107|gb|EEX55047.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260672046|gb|EEX58867.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260674676|gb|EEX61497.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260873123|gb|EEX80192.1| proton-translocating NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68] gi|297175337|gb|EFH34684.1| NADH dehydrogenase I subunit M [Brucella abortus bv. 5 str. B3196] Length = 502 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 286/487 (58%), Positives = 376/487 (77%), Gaps = 2/487 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +G +IL RR+ VAL + FI SL VW+ FD Sbjct: 3 DWPILSTVTFLPLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYH+GVDGIS+L VVL+ FL PFCIL+SW S+++ +EYMIAFL+ Sbjct: 63 GFQMVEELDWMGSGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD+ LFY+FFEASLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LETLMIGVFCALDLFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLI 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T +I++L + FP S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWQAGTMNIVELLQYN-FPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG IRF LP+FPLAS FAP IF LS++AIIY SLV+MVQ D+K Sbjct: 242 TAGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AH+ YVT+GIF+ + G++GA+FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSVAHIAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAV ++FTMAN+GLPGTSGFIGEFL + VF+ + VA+ A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYRKV+FG E ++ L DLS RE+ ++YP+ LT+FFG+YP P+ + + + Sbjct: 422 AAYALWLYRKVIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAV 481 Query: 481 SSIIENY 487 +++I++Y Sbjct: 482 NALIQHY 488 >gi|161618778|ref|YP_001592665.1| NADH dehydrogenase subunit M [Brucella canis ATCC 23365] gi|161335589|gb|ABX61894.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brucella canis ATCC 23365] Length = 502 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 286/487 (58%), Positives = 375/487 (77%), Gaps = 2/487 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +G +IL RR+ VAL + FI SL VW+ FD Sbjct: 3 DWPILSTVTFLPLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYH+ VDGIS+L VVL+ FL PFCIL+SW S+++ +EYMIAFL+ Sbjct: 63 GFQMVEELDWMGSGISYHMSVDGISVLFVVLSAFLIPFCILASWVSVEKRVKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD+ LFY+FFEASLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LETLMIGVFCALDLFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLI 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T +I++L + FP S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWQAGTMNIVELLQYN-FPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG IRF LP+FPLAS FAP IF LS++AIIY SLV+MVQ D+K Sbjct: 242 TAGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM YVT+GIF+ + G++GA+FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAV ++FTMAN+GLPGTSGFIGEFL + VF+ + VA+ A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTCVALFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYRKV+FG E ++ L DLS RE+ ++YP+ LT+FFG+YP P+ + + + Sbjct: 422 AAYALWLYRKVIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAV 481 Query: 481 SSIIENY 487 +++I++Y Sbjct: 482 NALIQHY 488 >gi|254469370|ref|ZP_05082775.1| NADH-quinone oxidoreductase chain m [Pseudovibrio sp. JE062] gi|211961205|gb|EEA96400.1| NADH-quinone oxidoreductase chain m [Pseudovibrio sp. JE062] Length = 508 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 285/484 (58%), Positives = 370/484 (76%), Gaps = 1/484 (0%) Query: 6 LSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LSI TFLP +GV F++L + + VAL +T FI SLF+W F FQM Sbjct: 7 LSITTFLPLVGVLFILLVRGDDPDAKTNIRRVALITTTFTFIVSLFIWGGFTNENPGFQM 66 Query: 65 IEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 +E Y W +YH+GVDGIS+L V+LTTFL P CIL+SW+S+Q+ +EYMIAFLVLE++ Sbjct: 67 VEKYDWFGDTFTYHMGVDGISMLFVILTTFLMPLCILASWESVQDRVKEYMIAFLVLETL 126 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 +IG F +LD++LFY+FFEA LIPMF+IIGVWGG R+YA+YKFFLYT GS+ ML AI+ Sbjct: 127 MIGVFCALDLVLFYVFFEAGLIPMFLIIGVWGGPRRVYASYKFFLYTLLGSVLMLAAIMA 186 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 M W+ T I++L S FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+APTAGS Sbjct: 187 MYWQAGTLDIVELLDKSDFPAQMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 246 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 V LA I+LKMGGYG +RF LP+FP+AS FAP+IF LS++AIIY SLV++ Q DIKKLIA Sbjct: 247 VVLAAILLKMGGYGFLRFSLPMFPIASDMFAPLIFTLSIVAIIYTSLVALAQEDIKKLIA 306 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+AHMG+VT+GIFS G+EGA+F ML+HGL+S ALF CVGVIYDR+HTR I AYGG Sbjct: 307 YSSVAHMGFVTMGIFSANAQGIEGAIFMMLAHGLISGALFLCVGVIYDRMHTRQITAYGG 366 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 LV+NMPRYAV M+FTMAN+GLPGT+GF+GEFL ++ VFQ + VA A+ GV+LSA Y+ Sbjct: 367 LVNNMPRYAVAFMIFTMANVGLPGTAGFVGEFLTMIGVFQVNTWVAFFAATGVILSAAYA 426 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 L+LYR+VVFG + E ++ + DL+ RE+ ++ P+ +LT+FFG YP + D S + ++I Sbjct: 427 LFLYRRVVFGALEKESLKSMLDLTGREKLILAPLIILTIFFGFYPAALLDVTSASVGALI 486 Query: 485 ENYT 488 ENY Sbjct: 487 ENYN 490 >gi|254704129|ref|ZP_05165957.1| NADH dehydrogenase subunit M [Brucella suis bv. 3 str. 686] gi|260566622|ref|ZP_05837092.1| NADH-ubiquinone oxidoreductase [Brucella suis bv. 4 str. 40] gi|261754795|ref|ZP_05998504.1| proton-translocating NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686] gi|260156140|gb|EEW91220.1| NADH-ubiquinone oxidoreductase [Brucella suis bv. 4 str. 40] gi|261744548|gb|EEY32474.1| proton-translocating NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686] Length = 502 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 286/487 (58%), Positives = 375/487 (77%), Gaps = 2/487 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +G +IL RR+ VAL + FI SL VW+ FD Sbjct: 3 DWPILSTVTFLPLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYH+ VDGIS+L VVL+ FL PFCIL+SW S+++ +EYMIAFL+ Sbjct: 63 GFQMVEELDWMGSGISYHMSVDGISVLFVVLSAFLIPFCILASWVSVEKRVKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD+ LFY+FFEASLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LETLMIGVFCALDLFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLI 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T +I++L + FP S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWQAGTMNIVELLQYN-FPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG IRF LP+FPLAS FAP IF LS++AIIY SLV+MVQ D+K Sbjct: 242 TAGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM YVT+GIF+ + G++GA+FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAV ++FTMAN+GLPGTSGFIGEFL + VF+ + VA+ A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYRKV+FG E ++ L DLS RE+ ++YP+ LT+FFG+YP P+ + + + Sbjct: 422 AAYALWLYRKVIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAV 481 Query: 481 SSIIENY 487 +++I++Y Sbjct: 482 NALIQHY 488 >gi|239831698|ref|ZP_04680027.1| proton-translocating NADH-quinone oxidoreductase, chain M [Ochrobactrum intermedium LMG 3301] gi|239823965|gb|EEQ95533.1| proton-translocating NADH-quinone oxidoreductase, chain M [Ochrobactrum intermedium LMG 3301] Length = 511 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 287/496 (57%), Positives = 376/496 (75%), Gaps = 2/496 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +G +IL RR+ VAL + F SL VW+ FD Sbjct: 12 DWPILSTVTFLPLVGALLILLIKDDSEASRRNIRNVALLTTIFVFALSLVVWAGFDNSNP 71 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYH+GVDGIS+L VVL+ FL PFCIL+SW S+++ +EYMIAFL+ Sbjct: 72 GFQMVEQVDWMGGGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLI 131 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD+ LFY+FFEASLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 132 LETLMIGVFCALDLFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLI 191 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T +I++L FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 192 AIMAMYWQAGTMNIVELLKYD-FPAGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 250 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG IRF LP+FPLAS FAP IF LS+IAIIY SLV+MVQ D+K Sbjct: 251 TAGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFALSVIAIIYTSLVAMVQEDMK 310 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM YVT+GIF+ + G++GA+FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 311 KLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIA 370 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAV ++FTMAN+GLPGTSGFIGEFL + VF+ + VA+ A+ GV+LS Sbjct: 371 AFGGLVNNMPKYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILS 430 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYR+V+FG E ++ L DLS RE+ ++YP+ VLT+FFG+YP P+ + + + Sbjct: 431 AAYALWLYRQVIFGALTKESLKALLDLSPREKLILYPLVVLTIFFGVYPTPVFNVTAGAV 490 Query: 481 SSIIENYTLKTGYSDS 496 ++++++Y S S Sbjct: 491 NALVQHYDAALAGSAS 506 >gi|118590025|ref|ZP_01547429.1| NADH dehydrogenase subunit M [Stappia aggregata IAM 12614] gi|118437522|gb|EAV44159.1| NADH dehydrogenase subunit M [Stappia aggregata IAM 12614] Length = 508 Score = 595 bits (1533), Expect = e-168, Method: Compositional matrix adjust. Identities = 281/489 (57%), Positives = 378/489 (77%), Gaps = 2/489 (0%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 ++ P LS+ TFLP LGV F++L +++ VAL +++ F+ SLF+W FD Sbjct: 2 IDWPILSLTTFLPLLGVLFILLVPGNDEGSKKNIRMVALVTTSVTFLLSLFIWGNFDYAN 61 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S FQ +E+ W+ SY +GVDGIS+L V+LTTFL PFCIL+SW S+Q+ +EYMIAFL Sbjct: 62 SGFQFVEHREWLGSNISYRMGVDGISVLFVILTTFLMPFCILASWDSVQKRVKEYMIAFL 121 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VLE+++IG F +LD+++FY+FFEA LIPMF+IIGVWGG+ R+YA+YKFFLYT GS+ ML Sbjct: 122 VLETLMIGVFCALDLVVFYVFFEAGLIPMFLIIGVWGGARRVYASYKFFLYTLLGSVLML 181 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI+ M W T++I +L + +FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 182 IAIMAMYWNAGTTNIEELL-VHQFPAGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEA 240 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAG++LK+GGYG +RF LP+FPLAS FAP +F LS++AIIY SLV++ Q DI Sbjct: 241 PTAGSVILAGVLLKLGGYGFLRFSLPMFPLASDMFAPFVFTLSVVAIIYTSLVALAQEDI 300 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMGYVT+GIF+ + GV+G +FQMLSHG+VS ALF CVGVIYDR+HTRDI Sbjct: 301 KKLIAYSSVAHMGYVTMGIFTMTEQGVQGGIFQMLSHGIVSGALFLCVGVIYDRMHTRDI 360 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGGLV+ MP+YAV ++FTMAN+GLPGTSGF+GE L +M FQ ++ VA A+ GV+L Sbjct: 361 TAYGGLVNRMPKYAVAFLIFTMANVGLPGTSGFVGEILTLMGAFQVNSWVAFFATTGVIL 420 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+L+LYR+VVFG + E ++ + DL+LRE+ ++ P+ +LT+FFG YP+ I D Sbjct: 421 SAAYALYLYRRVVFGALEKESLKSILDLNLREKVILVPMIILTIFFGFYPMAILDVTQGA 480 Query: 480 LSSIIENYT 488 + ++I YT Sbjct: 481 VDNLINQYT 489 >gi|148560286|ref|YP_001258792.1| NADH dehydrogenase subunit M [Brucella ovis ATCC 25840] gi|148371543|gb|ABQ61522.1| NADH dehydrogenase I, M subunit [Brucella ovis ATCC 25840] Length = 502 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 285/487 (58%), Positives = 374/487 (76%), Gaps = 2/487 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +G +IL RR+ VAL + FI SL VW+ FD Sbjct: 3 DWPILSTVTFLPLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYH+GVDGIS+L VVL+ FL PFCIL+SW S+++ +EYMIAFL+ Sbjct: 63 GFQMVEELDWMGSGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD+ LFY+FFEASLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LETLMIGVFCALDLFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLI 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T +I++L + FP S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWQAGTMNIVELLQYN-FPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG IRF LP+FPLAS FAP IF LS++AIIY SLV+MVQ D+K Sbjct: 242 TAGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM YVT+GIF+ + G++GA+FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+ M +YAV ++FTMAN+GLPGTSGFIGEFL + VF+ + VA+ A+ GV+LS Sbjct: 362 AFGGLVNKMSKYAVAFLIFTMANVGLPGTSGFIGEFLTLFGVFRVNTWVALFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLYRKV+FG E ++ L DLS RE+ ++YP+ LT+FFG+YP P+ + + + Sbjct: 422 AAYALWLYRKVIFGALDKESLKALLDLSPREKLILYPLVALTIFFGVYPTPVFNATAGAV 481 Query: 481 SSIIENY 487 +++I++Y Sbjct: 482 NALIQHY 488 >gi|227821631|ref|YP_002825601.1| NADH dehydrogenase subunit M [Sinorhizobium fredii NGR234] gi|227340630|gb|ACP24848.1| NADH dehydrogenase I chain M [Sinorhizobium fredii NGR234] Length = 503 Score = 591 bits (1524), Expect = e-167, Method: Compositional matrix adjust. Identities = 271/460 (58%), Positives = 362/460 (78%), Gaps = 1/460 (0%) Query: 29 GRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILL 88 GRR+ ++L + + F SL+VW FD FQMIE + W+ SYHLG+DGIS+L Sbjct: 31 GRRNILNISLLTTIVVFGLSLYVWYQFDSSNPGFQMIEKHEWLGTGISYHLGIDGISVLF 90 Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 + LT FL PFC+L+SW +I+ +EYMIAFL+LE++++G F+SLD++LFY+FFEA LIPM Sbjct: 91 LPLTAFLMPFCVLASWVTIENRLKEYMIAFLLLETLMLGVFVSLDIVLFYVFFEAGLIPM 150 Query: 149 FVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ 208 F+IIGVWGG +R+YA+YKFFLYT GS+ ML AI+ M W+ T+ I +L + FP +Q Sbjct: 151 FIIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITELLKYN-FPRQMQ 209 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 W+W+AFF SFA+K+PM+P HTWLP+AHVQAPTAGSV LAGI+LK+GGYG +RF LP+FP Sbjct: 210 TWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGILLKLGGYGFLRFSLPMFP 269 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 LAS YFAP ++ LS+IAIIY SLV+M+Q+DIKKLIAYSS+AHMGYVT+G F+ GV+G Sbjct: 270 LASDYFAPFVYTLSIIAIIYTSLVAMMQSDIKKLIAYSSVAHMGYVTMGTFAANIQGVQG 329 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 A+FQMLSHG+VS ALF CVGV+YDRLHTR+I AYGGLV+NMP+YAV MVFTMAN+GLPG Sbjct: 330 AIFQMLSHGIVSGALFLCVGVVYDRLHTREISAYGGLVNNMPKYAVAFMVFTMANVGLPG 389 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 TSGF+GE L ++ F+ + VA+ A+ GV+LSA Y+LWLYR+V+FG + + ++ + DLS Sbjct: 390 TSGFVGEVLTLVGAFRANTWVALFATSGVILSAAYALWLYRRVIFGALEKDSLKAMLDLS 449 Query: 449 LRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 RE+ ++YP+ +LT+FFG+YP P+ D + + ++ NY Sbjct: 450 TREKLILYPLVILTIFFGVYPAPVFDATAASVDLLVNNYA 489 >gi|304391414|ref|ZP_07373356.1| NADH-quinone oxidoreductase subunit m [Ahrensia sp. R2A130] gi|303295643|gb|EFL90001.1| NADH-quinone oxidoreductase subunit m [Ahrensia sp. R2A130] Length = 506 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 279/487 (57%), Positives = 370/487 (75%), Gaps = 3/487 (0%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 +LP L+I TFLP +G ++ L RR+ VAL + + F+ SL +W+ FD R+ Sbjct: 3 DLPILTITTFLPLVGALIVFLIWEDSEVARRNVRMVALLTTCLTFLVSLGIWAGFDNSRA 62 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ +E WI + +YH+GVDGIS+L V+LTTFL PFCIL+SW +IQ REYMIAFL Sbjct: 63 DFQFVEKVEWISEGGIAYHMGVDGISMLFVILTTFLMPFCILASWDAIQHRVREYMIAFL 122 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE+++IG F SLD++LFY+FFEA LIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LLETLMIGVFCSLDIVLFYVFFEAGLIPMFIIIGVWGGQRRVYASMKFFLYTLLGSVLML 182 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI+ M W+ T+ I L A FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 183 LAIMAMYWQAGTTDIPTLLAY-DFPADMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAGI+LKMGGYG +RF LP+FPLAS +F LS+IAIIY SLV+++Q DI Sbjct: 242 PTAGSVILAGILLKMGGYGFLRFSLPMFPLASDTMQNFVFALSVIAIIYTSLVALMQEDI 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMGYVT+GIF+ G++GA+FQML+HGLVS ALF CVGV+YDR+HTR+I Sbjct: 302 KKLIAYSSVAHMGYVTMGIFTANVQGIQGAIFQMLAHGLVSGALFLCVGVVYDRMHTREI 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGGLV+NMP+YAV ++FTMAN+GLPGT+GF+GEFL ++ FQ + VA+ A+ GV+L Sbjct: 362 AAYGGLVNNMPKYAVAFLIFTMANVGLPGTAGFVGEFLTLLGAFQANTWVAIFATLGVIL 421 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LWLYR+VVFG E ++ + DL+ RE+ ++YP+ VL +FFG+YP P+ D + Sbjct: 422 SAAYALWLYRRVVFGTLDKEALKAMLDLNTREKVILYPLVVLVIFFGVYPSPVFDVTTAS 481 Query: 480 LSSIIEN 486 + +++ Sbjct: 482 VDNLVAT 488 >gi|319404247|emb|CBI77840.1| NADH dehydrogenase I chain M [Bartonella rochalimae ATCC BAA-1498] Length = 489 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 287/486 (59%), Positives = 374/486 (76%), Gaps = 2/486 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +GVF+IL +R+ VA + FI SL +W+ FD S Sbjct: 3 DWPILSTVTFLPLVGVFLILLIKDDSEAAKRNIRNVAFFTTVFVFIISLVIWAGFDTTNS 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E +HW+ SYH+G+DGIS+L VVL+ FL PFCIL+SW +IQ+ ++YMIAFL+ Sbjct: 63 DFQMVEKFHWLGSDISYHVGIDGISVLFVVLSAFLLPFCILASWNTIQDRLKDYMIAFLL 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE +IG F +LD +LFYIFFE SLIPMF+IIGVWGG+ RIYA+ KFFLYT GS+ ML Sbjct: 123 LEVAIIGVFCALDAILFYIFFEGSLIPMFIIIGVWGGARRIYASMKFFLYTLLGSVLMLV 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+VM WE T I L +F +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMVMYWEAGTLDIPTLLTY-QFNTHMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG++LK+GGYG IRF LP+FP+AS F+ ++F LSLIAIIY SLV++VQ+DIK Sbjct: 242 TAGSVILAGVLLKLGGYGFIRFSLPMFPIASADFSSLVFTLSLIAIIYTSLVALVQSDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMGYVT+GIFS + G++GA++QMLSHG+VS+ALF CVGVIY+RLHTR+I Sbjct: 302 KLIAYSSVAHMGYVTMGIFSANEQGIQGAIYQMLSHGIVSAALFLCVGVIYNRLHTREIS 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAVV ++FTMAN+GLPG+SGFIGEFL ++ VFQ + VAV A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVVFLIFTMANIGLPGSSGFIGEFLTLIGVFQVNKLVAVFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+L+LYR++VFG + E ++ L DLS E+ +YP+ +LT+FFG+YP PI T + Sbjct: 422 AAYALYLYRRIVFGSLEKENLKVLLDLSPIEKFTLYPMVILTIFFGVYPTPIFKTTMSAV 481 Query: 481 SSIIEN 486 S+I Sbjct: 482 ESLINQ 487 >gi|319405686|emb|CBI79309.1| NADH dehydrogenase I chain M [Bartonella sp. AR 15-3] Length = 489 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 286/486 (58%), Positives = 374/486 (76%), Gaps = 2/486 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +GVF+IL + + VA + FI SL +W+ FD S Sbjct: 3 DWPILSTVTFLPLIGVFLILLIKDDSEAAKSNIRNVAFFTTVFVFIISLVIWAGFDTTNS 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E +HW+ SYH+G+DGIS+L VVL+ FL PFCIL+SW +IQ+ ++YM+AFL+ Sbjct: 63 DFQMVEKFHWLGSGISYHMGIDGISVLFVVLSAFLLPFCILASWNTIQDRLKDYMVAFLL 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE +IG F +LD +LFYIFFE SLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LEVAIIGVFCALDAILFYIFFEGSLIPMFIIIGVWGGVRRVYASMKFFLYTLLGSVLMLV 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+VM WE T I L +F +Q W+W+AFF SFA+K+PM+PFHTWLP+AHV+AP Sbjct: 183 AIMVMYWEAGTLDIPTLLTY-QFTTHMQIWLWLAFFASFAVKMPMWPFHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG++LK+GGYG IRF LP+FP+AS F+ ++F LSLIAIIY SLV++VQ DIK Sbjct: 242 TAGSVILAGVLLKLGGYGFIRFSLPMFPIASADFSSLVFTLSLIAIIYTSLVALVQNDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMGYVT+GIFS + G++GA++QMLSHG+VS+ALF CVG+IY+RLHTR+I Sbjct: 302 KLIAYSSVAHMGYVTMGIFSANEQGIQGAIYQMLSHGIVSAALFLCVGIIYNRLHTREIS 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAVV ++FTMAN+GLPG+SGFIGEFL ++ VFQ + VAV A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFIGEFLTLIGVFQANKFVAVFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+L+LYR+VVFG S+ E ++ L DLS E+ +YP+ +LT+FFG+YP PI T + Sbjct: 422 AAYALYLYRRVVFGSSEKENLKVLLDLSPIEKFTLYPMVILTIFFGVYPRPIFKTTISAV 481 Query: 481 SSIIEN 486 S+I+ Sbjct: 482 ESLIKQ 487 >gi|319408591|emb|CBI82246.1| NADH dehydrogenase I chain M [Bartonella schoenbuchensis R1] Length = 489 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 284/486 (58%), Positives = 374/486 (76%), Gaps = 2/486 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +GVF+IL + + VA S F+ SL +W FD S Sbjct: 3 DWPILSTVTFLPLVGVFLILLIKDNTEAEKHNIRNVAFFTSVFVFVISLIIWVKFDNTNS 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E + W+ SYH+GVDGISIL VVL+ FL PFCIL+SW++I++ + YMIAFL+ Sbjct: 63 DFQMVEKFDWLGGGISYHMGVDGISILFVVLSAFLLPFCILASWENIKDRLKAYMIAFLL 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE +IG F +LD +LFY+FFE SLIPMF+IIGVWGG+ R+YA+ KFFLYT GS+ ML Sbjct: 123 LEVAIIGVFCALDAMLFYVFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVLMLV 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M WE T I L +F +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWEAGTLDIPTLLTY-QFSTHMQMWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG++LK+GGYG +RF LP+FP+AS FAP++F LSL+AIIY SLV++VQ DIK Sbjct: 242 TAGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPLVFVLSLVAIIYTSLVALVQNDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSSIAHMGYVT+GIF+ + G++GA++QMLSHG+VS+ALF CVGVIYDRLHTR+I Sbjct: 302 KLIAYSSIAHMGYVTMGIFAINEQGIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREIS 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAVV ++FTMAN+GLPG+SGF+GEFL ++ VFQ + VAV A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQINKLVAVFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+L+LYR+++FG E ++ L DLSLRE+ ++YP+ VLT+FFG+YP+PI T + + Sbjct: 422 AAYALYLYRRMIFGPLDKEGLKVLHDLSLREKIILYPMVVLTIFFGVYPMPILKTTAFTV 481 Query: 481 SSIIEN 486 ++I Sbjct: 482 ETLINQ 487 >gi|328543699|ref|YP_004303808.1| Proton-translocating NADH-quinone oxidoreductase, chain M subfamily [polymorphum gilvum SL003B-26A1] gi|326413443|gb|ADZ70506.1| Proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Polymorphum gilvum SL003B-26A1] Length = 506 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 281/501 (56%), Positives = 373/501 (74%), Gaps = 6/501 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCG-RRSFFGVALGISTINFIFSLFVWSVFDKGR 59 ++ P L+ TFLP GV IL G +R+ VAL + F+ SLF+W FD Sbjct: 2 IDWPILTTTTFLPLAGVLAILLVPGDDEGAKRNIRMVALVTTLFTFVLSLFIWGAFDYDN 61 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQM+E W+ +Y +GVDGIS+L V+LTTFL PFCIL+SW+S+Q+ +EYMIAFL Sbjct: 62 PGFQMVESRDWLSGTITYKMGVDGISMLFVILTTFLMPFCILASWESVQKRVKEYMIAFL 121 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE+++IG F +LD+++FY+FFEA L+PMF+IIGVWGG R+YA+YKFFLYT GS+ ML Sbjct: 122 ILETLMIGVFCALDLVVFYVFFEAGLLPMFLIIGVWGGKRRVYASYKFFLYTLLGSVLML 181 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPF--SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A++ M WE T+ D+ + + PF S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV Sbjct: 182 IAVMAMYWEAGTT---DITVLLRHPFGESMQTWLWLAFFASFAVKMPMWPVHTWLPDAHV 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAGI+LKMGGYG +RF LP+FPLAS FAP++F LS++AI+Y SLV++ Q Sbjct: 239 EAPTAGSVILAGILLKMGGYGFLRFSLPMFPLASDMFAPLVFTLSVVAIVYTSLVALAQE 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIKKLIAYSS+AHMGYVT+GIF+ GV+G +FQMLSHG+VS ALF CVGVIYDR+HTR Sbjct: 299 DIKKLIAYSSVAHMGYVTMGIFTMTPQGVQGGLFQMLSHGIVSGALFLCVGVIYDRMHTR 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I AYGGLV+ MP YAV ++FTMAN+GLPGTSGF+GEFL +M F+ + VA++A+ GV Sbjct: 359 EISAYGGLVNRMPFYAVAFLIFTMANVGLPGTSGFVGEFLTLMGAFEVNTWVALIATTGV 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +LSA Y+L+LYR+VVFG E ++ + DLS RE+ ++ P+ VLTV FG YP PI D Sbjct: 419 ILSAAYALFLYRRVVFGALDKESLKSITDLSFREQAILVPMIVLTVLFGFYPAPILDVTQ 478 Query: 478 VPLSSIIENYTLKTGYSDSVK 498 + ++I NY + V+ Sbjct: 479 ASVDALITNYQAALDAAGQVQ 499 >gi|319898894|ref|YP_004158987.1| NADH dehydrogenase I chain M [Bartonella clarridgeiae 73] gi|319402858|emb|CBI76409.1| NADH dehydrogenase I chain M [Bartonella clarridgeiae 73] Length = 489 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 285/489 (58%), Positives = 374/489 (76%), Gaps = 8/489 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILF----SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 + P LS VTFLP +GVF+IL S C R+ VA + F+ SL +W+ FD Sbjct: 3 DWPILSTVTFLPLVGVFLILLIKDDSEEAKCNIRN---VAFFTAMFVFVISLVIWAGFDN 59 Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 S FQM+E +HW+ SYH+G+DGIS+L VVL+ FL PFCIL+SW +IQ+ ++YMIA Sbjct: 60 TNSDFQMVEKFHWLGGDISYHMGIDGISVLFVVLSAFLLPFCILASWNTIQDRLKDYMIA 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL+LE +IG F +LD +LFYIFFE SLIPMF+IIGVWGG+ R+YA+ KFFLYT GS+ Sbjct: 120 FLLLEVAIIGVFCALDAILFYIFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVL 179 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML AI+ M WE T I L +F +Q W+W+AFF SFA+K+PM+P HTWLP+AHV Sbjct: 180 MLVAIMAMYWEAGTLDIPTLLT-HQFTTHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHV 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAGI+LK+GGYG IRF LP+FP+AS FAP++F LSLI+IIY SLV++VQ Sbjct: 239 EAPTAGSVILAGILLKLGGYGFIRFSLPMFPIASADFAPLVFTLSLISIIYTSLVALVQN 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIKKLIAYSS+AHMGYV +GIFS + G++GA++QMLSHG++S+ALF CVGVIY+RLHTR Sbjct: 299 DIKKLIAYSSVAHMGYVMMGIFSANEQGIQGAIYQMLSHGIISAALFLCVGVIYNRLHTR 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I A+GGLV+NMP+YAVV ++FTMAN+GLPG+SGFIGEFL ++ VFQ + +AV A+ GV Sbjct: 359 EISAFGGLVNNMPKYAVVFLIFTMANIGLPGSSGFIGEFLTLIGVFQINKFIAVFATTGV 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 VLSA Y+L+LYR+++FG E ++ L DLS RE+ +YP+ +LT+FFG+YP PI T + Sbjct: 419 VLSAAYALYLYRRIIFGSLDKENLKVLLDLSPREKFTLYPMVILTIFFGVYPTPIFKTTT 478 Query: 478 VPLSSIIEN 486 + ++I Sbjct: 479 SAVKALINQ 487 >gi|240850595|ref|YP_002971995.1| NADH dehydrogenase I subunit M [Bartonella grahamii as4aup] gi|240267718|gb|ACS51306.1| NADH dehydrogenase I subunit M [Bartonella grahamii as4aup] Length = 489 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 287/484 (59%), Positives = 370/484 (76%), Gaps = 2/484 (0%) Query: 4 PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS VTFLP +GV +ILF R + VA + FI SL +W FD +F Sbjct: 5 PILSTVTFLPLVGVLLILFIKDDSEVARHNIRNVAFFTTLFVFIISLIIWIGFDSSNPNF 64 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 QM+E W+ SYH+GVDGISIL VVL+ FL PFCIL+S ++++E + YMIAFL+LE Sbjct: 65 QMVEKSSWLGGGISYHMGVDGISILFVVLSAFLLPFCILASLENVKERLKAYMIAFLLLE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +IG F +LD +LFY+FFE SLIPMF+IIGVWGG+ R+YA+ KFFLYT GS+ ML A+ Sbjct: 125 VAIIGVFCALDAMLFYVFFEGSLIPMFIIIGVWGGARRVYASIKFFLYTLLGSVLMLVAL 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + M WE T I L +FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+APTA Sbjct: 185 MAMYWEAGTLDIPTLLNY-QFPAHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTA 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LAG++LK+GGYG +RF LP+FP+AS FAP+IF LSLIAIIY SLV++VQ DIKKL Sbjct: 244 GSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPLIFTLSLIAIIYTSLVALVQNDIKKL 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSSIAHMGYVT+GIFS + G++GA++QMLSHG+VS+ALF CVGVIYDRLHTR+I A+ Sbjct: 304 IAYSSIAHMGYVTMGIFSANEQGIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREISAF 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGLV+NMP+YAVV ++FTMAN+GLPG+SGF+GEFL ++ VFQ + V VLA+ GV+LSA Sbjct: 364 GGLVNNMPKYAVVFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVVLATTGVILSAA 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y+L+LYR+VVFG E ++ L DLSLRE+ ++YP+ +LT+FFGIYP PI + + + Sbjct: 424 YALYLYRRVVFGSLDKENLKVLIDLSLREKFILYPMVILTIFFGIYPTPILKATAFSVET 483 Query: 483 IIEN 486 +I Sbjct: 484 LINK 487 >gi|319407255|emb|CBI80894.1| NADH dehydrogenase I chain M [Bartonella sp. 1-1C] Length = 489 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 284/486 (58%), Positives = 372/486 (76%), Gaps = 2/486 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS V FLP +GVF+IL +R+ VA + FI SL +W+ FD S Sbjct: 3 DWPILSTVIFLPLVGVFLILLIKDDSEVAKRNIRNVAFFTTVFVFIISLVIWAGFDTTNS 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E +HW+ SYH+G+DGIS+L VVL+ FL PFCIL+SW +IQ+ ++YMIAFL+ Sbjct: 63 DFQMVEKFHWLGSGISYHVGIDGISVLFVVLSAFLLPFCILASWDAIQDRLKDYMIAFLL 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE +IG F +LD +LFYIFFE SLIPMF+IIGVWGG+ R+YA+ KFFLYT GS+ ML Sbjct: 123 LEIAIIGVFCALDAILFYIFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVLMLV 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+VM WE T I L +F +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMVMYWEAGTLDIPTLLTY-QFNTHMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG++LK+GGYG IRF LP+FP+AS FA ++F LSLIAIIY SLV++VQ+DIK Sbjct: 242 TAGSVILAGVLLKLGGYGFIRFSLPMFPIASADFASLVFTLSLIAIIYTSLVALVQSDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMGYVT+GIFS + G++GA++QMLSHG+VS+ALF CVGVIY+RLHTR+I Sbjct: 302 KLIAYSSVAHMGYVTMGIFSANEQGIQGAIYQMLSHGIVSAALFLCVGVIYNRLHTREIS 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAVV ++FTMAN+GLPG+SGFIGEFL ++ VFQ + VAV A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVVFLIFTMANIGLPGSSGFIGEFLTLIGVFQVNKLVAVFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+L+LYR++VFG + E ++ L DLS E+ +YP+ ++ +FFG+YP PI T + Sbjct: 422 AAYALYLYRRIVFGSLEKENLKVLLDLSPIEKFTLYPMVIIIIFFGVYPTPILKTTMSAV 481 Query: 481 SSIIEN 486 S+I Sbjct: 482 ESLINQ 487 >gi|254500852|ref|ZP_05113003.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Labrenzia alexandrii DFL-11] gi|222436923|gb|EEE43602.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Labrenzia alexandrii DFL-11] Length = 505 Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust. Identities = 280/489 (57%), Positives = 370/489 (75%), Gaps = 2/489 (0%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 ++ P LS+ TFLP LGV FV++ S + VAL + + F SL +W+ FD Sbjct: 2 IDWPILSLTTFLPLLGVVFVLMVSGNDDQAKGQMRMVALVTTGMTFGLSLVIWAFFDYSN 61 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ +E W+ SY +GVDGIS+L VVLT FL PFCIL+SWKS+Q REYM+AFL Sbjct: 62 PGFQFVEERDWLGSNISYKMGVDGISLLFVVLTAFLMPFCILASWKSVQNRVREYMVAFL 121 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE+++IG F +LD+++FY+FFEA LIPMF+IIGVWGG+ R+YA+YKFFLYT GS+ ML Sbjct: 122 ILETLMIGVFCALDIVVFYVFFEAGLIPMFLIIGVWGGARRVYASYKFFLYTLLGSVLML 181 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI+ M W T+ I +L + +FP +Q W+WIAFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 182 VAIMAMYWTAGTTDIQELL-VYQFPPEMQTWLWIAFFASFAVKMPMWPVHTWLPDAHVEA 240 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAG++LK+GGYG +RF LP+FPLAS FAP+++ LS++AIIY SLV++ Q DI Sbjct: 241 PTAGSVILAGVLLKLGGYGFLRFSLPMFPLASDMFAPLVYTLSVVAIIYTSLVALAQEDI 300 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMGYVT+GIF+ GV+G +FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 301 KKLIAYSSVAHMGYVTLGIFTMTPQGVQGGIFQMLSHGIVSGALFLCVGVIYDRMHTREI 360 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGGLV+ MP+YAV ++FTMAN+GLPGTSGF+GE LV++ FQ + VAV A+ GV+L Sbjct: 361 SAYGGLVNRMPKYAVAFLIFTMANVGLPGTSGFVGEILVLIGAFQVNTWVAVFATLGVIL 420 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+L+LYR+VVFG E ++ + DL LRE+ ++ P+ +LT+FFG YP+ I D Sbjct: 421 SACYALYLYRRVVFGSLDKESLKSILDLDLREKVILVPMIILTIFFGFYPMAILDVTQGS 480 Query: 480 LSSIIENYT 488 + ++I YT Sbjct: 481 VDNLINQYT 489 >gi|163868361|ref|YP_001609570.1| NADH dehydrogenase subunit M [Bartonella tribocorum CIP 105476] gi|161018017|emb|CAK01575.1| NADH dehydrogenase I chain M [Bartonella tribocorum CIP 105476] Length = 489 Score = 581 bits (1498), Expect = e-164, Method: Compositional matrix adjust. Identities = 281/487 (57%), Positives = 373/487 (76%), Gaps = 2/487 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 ++ P LS VTFLP +GV +ILF R + VA + FI SL +W FD Sbjct: 2 IDWPILSTVTFLPLVGVLLILFIKDDSEVARHNIRNVAFFTTIFVFIISLIIWIGFDSTN 61 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 +FQM+E ++W+ SYH+GVDGISIL +VL+ FL PFCIL+SW++++E + YMIAFL Sbjct: 62 PNFQMVEKFNWLGNGISYHMGVDGISILFIVLSAFLLPFCILASWENVKERLKAYMIAFL 121 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE +IG F +LD +LFY+FFE SLIPMF+IIGVWGG+ R+YA+ KFFLYT GS+ ML Sbjct: 122 LLEVAIIGVFCALDAILFYVFFEGSLIPMFIIIGVWGGARRVYASIKFFLYTLLGSVLML 181 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ M W+ T I L +FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 182 VALMAMYWQAGTLDIPTLLNY-QFPAHMQMWLWLAFFASFAVKMPMWPVHTWLPDAHVEA 240 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAG++LK+GGYG +RF LP+FP+AS FAP +F LSLIAIIY SLV++VQ+DI Sbjct: 241 PTAGSVILAGVLLKLGGYGFLRFSLPMFPIASADFAPFVFTLSLIAIIYTSLVALVQSDI 300 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSSIAHMGYVT+GIF+ + G++GA++QMLSHG+VS+ALF CVGVIYDRLHTR+I Sbjct: 301 KKLIAYSSIAHMGYVTMGIFAANEQGIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREI 360 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 A+GGLV+NMP+YAVV ++FTMAN+GLPGTSGF+GEFL ++ VFQ + + VLA+ GV+L Sbjct: 361 SAFGGLVNNMPKYAVVFLIFTMANVGLPGTSGFLGEFLTLIGVFQVNKLIVVLATTGVIL 420 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+L+LYR+VVFG E ++ L DLS RE+ ++YP+ +L +FFGIYP P+ + Sbjct: 421 SAAYALYLYRRVVFGSLDKENLKVLIDLSSREKFILYPMVILIIFFGIYPTPLLKVTAFS 480 Query: 480 LSSIIEN 486 + ++I Sbjct: 481 VEALINK 487 >gi|49474189|ref|YP_032231.1| NADH dehydrogenase subunit M [Bartonella quintana str. Toulouse] gi|49239693|emb|CAF26068.1| NADH dehydrogenase I, M subunit [Bartonella quintana str. Toulouse] Length = 489 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 282/489 (57%), Positives = 375/489 (76%), Gaps = 8/489 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILF----SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 + P LS VTFLP +GV +ILF S C R+ VA + FI SL +W+ FD Sbjct: 3 DWPILSTVTFLPLVGVILILFIKDDSESARCNIRN---VAFFTTVFVFIISLIIWAGFDH 59 Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 FQM+E ++W+ SYH+G+DGISIL VVL+ FL PFCIL+SW++I+++ + YMIA Sbjct: 60 TNPHFQMVEKFNWLGEGTSYHMGIDGISILFVVLSAFLLPFCILASWENIKDSLKAYMIA 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL+LE +IG F +LD +LFY+FFE SLIPMF+IIGVWGG+ R+YA+ KFFLYT GS+ Sbjct: 120 FLLLEVAIIGVFCALDAILFYVFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVL 179 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML AI+VM E T I L +FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV Sbjct: 180 MLVAIMVMYLEAGTLDIPTLLTY-QFPAHMQMWLWLAFFASFAVKMPMWPVHTWLPDAHV 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAG++LK+GGYG +RF LP+FP+AS FAP++F LSLIAI+Y SLV++VQ Sbjct: 239 EAPTAGSVILAGVLLKLGGYGFLRFSLPMFPIASTAFAPLVFVLSLIAILYTSLVALVQN 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIKKLIAYSSIAHMGYVT+GIF+ + G++GA++QMLSHG+VS+ALF CVGVIYDRLHTR Sbjct: 299 DIKKLIAYSSIAHMGYVTMGIFAANEQGIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTR 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I A+GGLV+NMP+YAVV ++FTMAN+GLPG+SGF+GEFL ++ VFQ + V + A+ GV Sbjct: 359 EISAFGGLVNNMPKYAVVFLIFTMANIGLPGSSGFLGEFLTLIGVFQVNKLVVIFATTGV 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +LSA Y+L+LYR+VVFG E ++ L DLS RE+ ++YP+ ++T+FFGIYP P+ + Sbjct: 419 ILSAAYALYLYRRVVFGSLDKENLKILIDLSSREKIILYPMVIITIFFGIYPTPVLKATA 478 Query: 478 VPLSSIIEN 486 + ++I Sbjct: 479 FSVEALINK 487 >gi|300023441|ref|YP_003756052.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hyphomicrobium denitrificans ATCC 51888] gi|299525262|gb|ADJ23731.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hyphomicrobium denitrificans ATCC 51888] Length = 495 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 273/482 (56%), Positives = 372/482 (77%), Gaps = 4/482 (0%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++TFLP +G +I + +++ +AL + + F SL +W FD +S FQ + Sbjct: 5 LSVITFLPLVGALLIAVQN--AEAKQNARWIALWTTLVTFAVSLLIWWNFDTTQSGFQFV 62 Query: 66 EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 E + W+ Y LGVDGIS+L ++LTTFL P CIL+SW S++ +EYMIAFLVLE+++ Sbjct: 63 EEHAWLGSL-KYKLGVDGISMLFIILTTFLMPLCILASWVSVENRVKEYMIAFLVLETLM 121 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM 185 +G F +LD++LFY+FFE LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML A++ M Sbjct: 122 LGVFSALDLVLFYLFFEGGLIPMFIIIGVWGGKRRVYASFKFFLYTLLGSVLMLLAMMAM 181 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 W T+ I L +KFP +Q+W+WIAFF SFA+K+PM+P HTWLP+AHV+APTAGSV Sbjct: 182 YWHAGTTDIPTLL-QTKFPPDMQWWLWIAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSV 240 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LAGI+LKMGGYG +RF LP+FP AS AP++F LS+IAIIY SLV++VQ D+KKLIAY Sbjct: 241 ILAGILLKMGGYGFLRFSLPMFPNASADLAPLVFSLSIIAIIYTSLVALVQEDMKKLIAY 300 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+AHMGYVT+GIF+G + G++GA+FQMLSHGLVSSALF CVGVIYDR+HTR+I AYGGL Sbjct: 301 SSVAHMGYVTMGIFTGSQQGIDGAIFQMLSHGLVSSALFLCVGVIYDRMHTREISAYGGL 360 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 V MP+YAV M+FTMAN+GLPGTSGFIGEFL +M+ F+++ VA+LA+ G++LSA Y+L Sbjct: 361 VERMPKYAVAFMIFTMANVGLPGTSGFIGEFLTLMAAFKSNTWVAILATTGIILSAAYAL 420 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 +LYR+VVFGV + ++ + DLS RE ++ P+ +LT+++G YP P+ D + + ++++ Sbjct: 421 YLYRRVVFGVLEKANLRSILDLSPREIAILAPLILLTIYYGFYPAPVLDVTAASVKNLVQ 480 Query: 486 NY 487 NY Sbjct: 481 NY 482 >gi|49475646|ref|YP_033687.1| NADH dehydrogenase subunit M [Bartonella henselae str. Houston-1] gi|49238453|emb|CAF27681.1| NADH dehydrogenase I, M subunit [Bartonella henselae str. Houston-1] Length = 489 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 282/486 (58%), Positives = 372/486 (76%), Gaps = 2/486 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +GV +ILF R + VA + FI SL +W+ FD + Sbjct: 3 DWPILSTVTFLPLVGVILILFIKDDSEAARYNIRNVAFFTTVFVFIISLIIWAGFDYTNA 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E ++W+ SYH+GVDGISIL VVL+ FL PFCIL+SW++I++ + YMIAFL+ Sbjct: 63 HFQMVEKFNWLGGGISYHMGVDGISILFVVLSAFLLPFCILASWENIKDRLKAYMIAFLL 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE +IG F +LD +LFY+FFE SLIPMF+IIGVWGG+ R+YA+ KFFLYT GS+ ML Sbjct: 123 LEVAIIGVFCALDAILFYVFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVLMLV 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+VM WE T I L +FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMVMYWETGTLDIPTLLNY-QFPAHMQIWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG++LK+GGYG +RF LP+FPLAS FAP++F LS+ AIIY SLV++VQ DIK Sbjct: 242 TAGSVILAGVLLKLGGYGFLRFSLPMFPLASADFAPLVFTLSVSAIIYTSLVALVQNDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSSIAHMGYVT+GIF+ + ++GA++QMLSHG+VS+ALF CVGVIYDRLHTR+I Sbjct: 302 KLIAYSSIAHMGYVTMGIFAANEQAIQGAIYQMLSHGIVSAALFLCVGVIYDRLHTREIS 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A+GGLV+NMP+YAV+ ++FTMAN+GLPG+SGF+GEFL ++ VFQ + V + A+ GV+LS Sbjct: 362 AFGGLVNNMPKYAVIFLIFTMANVGLPGSSGFLGEFLTLIGVFQVNKLVVIFATTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+L+LYR+VVFG E ++ L DLS RE+ ++YP+ +LT+FFGIYP PI + + Sbjct: 422 AAYALYLYRRVVFGSLDKENLKVLIDLSSREKFILYPMVILTIFFGIYPTPILKATAFSV 481 Query: 481 SSIIEN 486 ++I Sbjct: 482 KALINK 487 >gi|121602023|ref|YP_989082.1| NADH dehydrogenase subunit M [Bartonella bacilliformis KC583] gi|120614200|gb|ABM44801.1| NADH dehydrogenase (quinone), M subunit [Bartonella bacilliformis KC583] Length = 489 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 281/478 (58%), Positives = 367/478 (76%), Gaps = 8/478 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILF----SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 + P LS VTFLP +GV +ILF S C R+ VA + F SL +W FD Sbjct: 3 DWPILSTVTFLPLVGVILILFIKDNSEAEKCNIRN---VAFFTTVFVFFISLIIWVSFDN 59 Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 S+FQM+E + W+ SYH+G+DGISIL VVL+ FL PFC+L+SW+++++ + YMIA Sbjct: 60 TNSNFQMVEKFDWLGSGISYHMGIDGISILFVVLSAFLLPFCVLASWETVKDRLKAYMIA 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL+LE +IG F SLD +LFYIFFE SLIPMF+IIGVWGG+ R+YA+ KFFLYT GS+ Sbjct: 120 FLLLEVAIIGVFCSLDAVLFYIFFEGSLIPMFIIIGVWGGARRVYASMKFFLYTLLGSVL 179 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML AI+ M WE T I L +FP S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV Sbjct: 180 MLVAIMAMYWEAGTLDIPTLLNY-QFPISMQMWLWLAFFASFAVKMPMWPVHTWLPDAHV 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAG++LK+GGYG +RF LP+FP+AS F+P + LSLIAIIY SLV++VQ Sbjct: 239 EAPTAGSVILAGVLLKLGGYGFLRFSLPMFPVASVDFSPFVLVLSLIAIIYTSLVALVQN 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KKLIAYSS+AHMGYVT+GIF+ + GV+GA++QMLSHG+VS+ALF CVGVIYDRLHTR Sbjct: 299 DMKKLIAYSSVAHMGYVTMGIFAANEQGVQGAIYQMLSHGIVSAALFLCVGVIYDRLHTR 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I A+GGLV+NMP+YAVV ++ TMAN+GLPGTSGF+GEFL ++ VFQ + VA+ + GV Sbjct: 359 EISAFGGLVNNMPKYAVVFLILTMANVGLPGTSGFLGEFLTLIGVFQINKLVAIFTTTGV 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 +LSA Y+L+LYR+V++G E ++ L DLS RE+ ++YP+ +LT+FFGIYP PI T Sbjct: 419 ILSAAYALYLYRRVIWGTLDKESLKILCDLSQREKFLLYPMIILTIFFGIYPTPIFQT 476 >gi|307942131|ref|ZP_07657482.1| NADH-quinone oxidoreductase subunit m [Roseibium sp. TrichSKD4] gi|307774417|gb|EFO33627.1| NADH-quinone oxidoreductase subunit m [Roseibium sp. TrichSKD4] Length = 506 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 284/499 (56%), Positives = 375/499 (75%), Gaps = 2/499 (0%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 ++ P LSIVTFLP LGV F+++ + + VAL + F SL +W FD Sbjct: 2 LDFPILSIVTFLPLLGVVFLMIVPGNDDGAKGAMRMVALVTTLFTFATSLAIWYFFDYTN 61 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ +E W+ +Y +GVDGIS+L V+LTTFL PFCIL+SW+S+Q+ REYMIAFL Sbjct: 62 PGFQFVESREWLGGNINYKMGVDGISVLFVILTTFLMPFCILASWESVQKRVREYMIAFL 121 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE+++IG F +LD++LFYIFFEA LIPMF+IIGVWGG+ R+YA+YKFFLYT GS+ ML Sbjct: 122 ILETLMIGVFCALDLVLFYIFFEAGLIPMFLIIGVWGGARRVYASYKFFLYTLLGSVLML 181 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI+ M WE T+ I L S FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 182 IAIMAMYWEVGTTDIPALMDHS-FPGGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEA 240 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAGI+LK+GGYG +RF LP+FPLAS FAP++F LS+IAI+Y SLV++ Q DI Sbjct: 241 PTAGSVILAGILLKLGGYGFLRFSLPMFPLASDMFAPLVFTLSVIAIVYTSLVALAQEDI 300 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMGYVT+GIF+ G++G +FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 301 KKLIAYSSVAHMGYVTMGIFTMTPQGIQGGVFQMLSHGIVSGALFLCVGVIYDRMHTREI 360 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGGLV+ MP+YAV ++FTMAN+GLPGTSGF+GE L +M FQ + VAV+A+ GV+L Sbjct: 361 SAYGGLVNRMPKYAVAFLIFTMANVGLPGTSGFVGEILTLMGAFQVNTWVAVIATSGVIL 420 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+L+LYR+VVFG E ++ + DL RE+ ++ P+ +LT+FFG+YP+ I D Sbjct: 421 SAAYALYLYRRVVFGELNKESLKSILDLDFREKAILLPLIILTIFFGVYPMAILDVTQGS 480 Query: 480 LSSIIENYTLKTGYSDSVK 498 + ++I +YT + SV+ Sbjct: 481 VDNLINHYTAALEAAGSVQ 499 >gi|154248540|ref|YP_001419498.1| proton-translocating NADH-quinone oxidoreductase, chain M [Xanthobacter autotrophicus Py2] gi|154162625|gb|ABS69841.1| proton-translocating NADH-quinone oxidoreductase, chain M [Xanthobacter autotrophicus Py2] Length = 503 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 275/499 (55%), Positives = 372/499 (74%), Gaps = 9/499 (1%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS+VTFLP +G +F+++ R+ VAL + + F+ SL + FD S Sbjct: 3 DWPILSVVTFLPLVGALFILVVRGDDEVTARNARWVALWTTLVTFVVSLLLLPGFDSAAS 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ +E W+ +YH+GVDGIS+ V+LTTFL PFCIL+SW+S+ + +EYMIAFLV Sbjct: 63 GFQFVEKKAWLGELAAYHMGVDGISLPFVILTTFLMPFCILASWESVHKRVKEYMIAFLV 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD++LFY FFE LIPMF+IIG+WGG RIYAA+KFFLYT GS+ M+ Sbjct: 123 LETLMIGTFCALDLVLFYFFFEGGLIPMFLIIGIWGGQRRIYAAFKFFLYTLAGSVLMML 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T+ + L FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWQSGTTDVPTLLT-HGFPSGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG++LKMGGYG +R+ LP+FP AS YFAP++F LS++AIIY SLV++VQ DIK Sbjct: 242 TAGSVILAGVLLKMGGYGFLRYSLPMFPEASHYFAPLVFTLSVVAIIYTSLVALVQEDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSSIAHMG+VT+GIF+ + G++GAMF M+SHG VS ALF CVGVIYDRLHTR+I Sbjct: 302 KLIAYSSIAHMGFVTMGIFAMNEQGLQGAMFLMISHGFVSGALFLCVGVIYDRLHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGLVH MP YA V+M+FTMAN+GLPGTSGFIGEFL +++ F+ + +A A+ GV+LS Sbjct: 362 AYGGLVHRMPLYATVLMIFTMANVGLPGTSGFIGEFLTMLAAFERNTWIAFFAATGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LWLY +V+FG + EK++ + DLS RE ++ P+ +LT+ FG++P PI + S + Sbjct: 422 AGYALWLYLRVIFGPLEKEKLKTMMDLSPREIVIMVPLVILTILFGVWPAPILNMTSHAV 481 Query: 481 SSIIENYTLKTGYSDSVKG 499 ++++ +DSV G Sbjct: 482 NAVVAR-------TDSVAG 493 >gi|154253653|ref|YP_001414477.1| proton-translocating NADH-quinone oxidoreductase subunit M [Parvibaculum lavamentivorans DS-1] gi|154157603|gb|ABS64820.1| proton-translocating NADH-quinone oxidoreductase, chain M [Parvibaculum lavamentivorans DS-1] Length = 514 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 278/496 (56%), Positives = 371/496 (74%), Gaps = 4/496 (0%) Query: 6 LSIVTFLPFLGVFVILFS--SYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS++TFLP +G VIL + R + + VAL + F+ SL++W FD + FQ Sbjct: 7 LSLITFLPLIGALVILATRGDEATVARNARY-VALWTTGATFLVSLYIWWKFDPTTADFQ 65 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 ++ W+ +YH+GVDGIS+L V+LTTFL P CIL+SW SI +EYMIAFLVLE+ Sbjct: 66 FVQQTEWLGGAINYHMGVDGISMLFVILTTFLMPACILASWTSINTRVKEYMIAFLVLET 125 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F +LD++LFY+FFE LIPMF+IIGVWGG+ RIYA++KFFLYTF GS+ ML AI+ Sbjct: 126 LMIGVFCALDLVLFYLFFEGGLIPMFLIIGVWGGARRIYASFKFFLYTFVGSVLMLLAIM 185 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M W T+SI L FP +Q+W+W+AFF SFA+K+PM+P HTWLP+AHV+APTAG Sbjct: 186 AMYWSAGTTSIPVLLE-HDFPAGMQFWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAG 244 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI+LKMGGYG +RF LP+FP+AS A ++F LS+IAI+Y SLV++VQ D+KKLI Sbjct: 245 SVILAGILLKMGGYGFLRFSLPMFPVASADLAWLVFGLSVIAIVYTSLVALVQEDMKKLI 304 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHMG+VT+GIF+ + GV+G +FQMLSHG VS ALF CVGVIYDR+HTR+I AYG Sbjct: 305 AYSSVAHMGFVTMGIFAANQQGVQGGIFQMLSHGWVSGALFLCVGVIYDRIHTREIAAYG 364 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GLV+ MP YAV MVFTMAN+GLPGTSGFIGEFL I+ VF+ + VA +A+ GV+L+A Y Sbjct: 365 GLVNRMPLYAVAFMVFTMANVGLPGTSGFIGEFLTILGVFKVNTWVAAIAATGVILAAGY 424 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 +L+LYR+++FGV + + ++ + DL+ RE + P+ T+FFG+YP PI D +V + ++ Sbjct: 425 ALYLYRRIIFGVLEKDSLKSIADLNRREVITIAPLLAATIFFGVYPSPIMDVTAVSVENL 484 Query: 484 IENYTLKTGYSDSVKG 499 + NYT S +G Sbjct: 485 VTNYTAAVEAYRSAEG 500 >gi|148255901|ref|YP_001240486.1| NADH dehydrogenase subunit M [Bradyrhizobium sp. BTAi1] gi|146408074|gb|ABQ36580.1| NADH dehydrogenase subunit M [Bradyrhizobium sp. BTAi1] Length = 502 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 272/486 (55%), Positives = 360/486 (74%), Gaps = 2/486 (0%) Query: 4 PFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS+VTFLP +G +I L RR+ +AL + I F S+ + FD ++ F Sbjct: 5 PILSVVTFLPIVGALLIYLVRGDDEAARRNARWIALWTTLITFAVSVLLVLRFDPNQTDF 64 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E +W+ SYH+GVDGIS+ V+LTT L PFCI++SWKS+ REYM+AFL+LE Sbjct: 65 QFVEKSNWLAAGISYHMGVDGISLPFVILTTALMPFCIVASWKSVTNRLREYMMAFLILE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++++G F +LD++LFY+FFE LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML AI Sbjct: 125 TLMVGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAI 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + + W T+ I L + P S+Q W W+AFF SFA+K+PM+P HTWLP+AHV+APTA Sbjct: 185 MALYWNAGTTDIPTLMH-TAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTA 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LA I+LKMGGYG +RF LP+FPLAS FAP+++ LS IAIIY SLV+++Q DIKKL Sbjct: 244 GSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWTLSAIAIIYTSLVALMQEDIKKL 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHMG+VT+GIF+G GV G +FQM+SHG+VS ALF CVGV+YDR+HTR+I AY Sbjct: 304 IAYSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGVVYDRMHTREIAAY 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGLV+ MP YA+V MVFTMAN+GLPGTSGF+GEF+ ++ F+ S A A+FGV+LSA Sbjct: 364 GGLVNRMPIYALVFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATFGVILSAG 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y+LWLYRKVVFG + +KDL+LRE +++P+ LT+ FG+YP PI D + + Sbjct: 424 YALWLYRKVVFGALTKPSLASIKDLTLREGVILFPLVALTILFGVYPKPILDMSAASVQQ 483 Query: 483 IIENYT 488 ++ NY Sbjct: 484 LVNNYN 489 >gi|158423304|ref|YP_001524596.1| proton-translocating NADH-quinone oxidoreductase chain M protein [Azorhizobium caulinodans ORS 571] gi|158330193|dbj|BAF87678.1| proton-translocating NADH-quinone oxidoreductase chain M protein [Azorhizobium caulinodans ORS 571] Length = 504 Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust. Identities = 274/477 (57%), Positives = 361/477 (75%), Gaps = 2/477 (0%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 N P LS+VTFLP +G +F+ + R+ VAL + + F+ SLF+ FD Sbjct: 3 NWPILSVVTFLPLVGALFIFVVRGEDEVAARNARWVALWTTLVTFVVSLFLLPGFDPAAP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ +E W+ +YH+GVDGIS+ LV+L+TFL PFCIL+SW S+++ +EYMI FLV Sbjct: 63 GFQFVEKKPWLGGIAAYHMGVDGISLSLVILSTFLMPFCILASWDSVKKRVKEYMICFLV 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE++++G F +LD++LFY FFEA+LIPMF+IIGVWGG+ RIYA++KFFLYT GS+ M+ Sbjct: 123 LETLMVGTFCALDLVLFYFFFEAALIPMFLIIGVWGGARRIYASFKFFLYTLLGSVLMML 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T+ + L FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWKAGTTDVPTLMQYG-FPAGMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG++LKMGGYG IRF LP+FP AS FAP+++ LS++AIIY SLV+MVQ DIK Sbjct: 242 TAGSVILAGVLLKMGGYGFIRFSLPMFPDASHLFAPLVYTLSVVAIIYTSLVAMVQEDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSSIAHMG+VT+G+FS ++G++GAMF M+SHG VS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSIAHMGFVTMGLFSMNEAGLQGAMFLMISHGFVSGALFLCVGVIYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGGLV MP YAV MMVFTMAN+GLPGTSGF+GEFL ++S FQ + VA A+ GV+LS Sbjct: 362 AYGGLVKRMPLYAVAMMVFTMANVGLPGTSGFVGEFLTMLSAFQRNTWVAFFAATGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 A Y+LWLY +V+FG + E + +LKDL+ RE ++ P+ LT+ FG +P P+ D S Sbjct: 422 AAYALWLYWRVIFGPLEKENLMKLKDLNAREIGIMIPLIALTIIFGFWPAPVLDMTS 478 >gi|163793199|ref|ZP_02187175.1| NADH dehydrogenase subunit M [alpha proteobacterium BAL199] gi|159181845|gb|EDP66357.1| NADH dehydrogenase subunit M [alpha proteobacterium BAL199] Length = 504 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 278/501 (55%), Positives = 371/501 (74%), Gaps = 11/501 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV-----ALGISTINFIFSLFVWSVFD 56 N P LS+V FLP +GVF IL + G + + AL IST F+ SL +W FD Sbjct: 4 NAPLLSLVIFLPLVGVFFILLTR----GEEAQVAINCRWQALLISTAVFLVSLLIWYNFD 59 Query: 57 KGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 + FQM+E Y WI +YH+GVDGIS+ V+L+T LTP CIL+SW+++Q +EYM Sbjct: 60 PTTADFQMVERYDWIPGSSIAYHVGVDGISMWFVLLSTLLTPICILASWEAVQSRVKEYM 119 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 IAFLVLE++++G F +LD+L+FY+FFE LIPMF+IIGVWGG R+YAA+KFFLYT GS Sbjct: 120 IAFLVLETLMVGMFCALDILVFYVFFEGVLIPMFLIIGVWGGQRRVYAAFKFFLYTLGGS 179 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 + M+ AI+ M WE T+ I L KF ++Q W+W+AFF SFA+K+PM+P HTWLP+A Sbjct: 180 VLMMIAILAMYWEAGTTDIPTLLVF-KFAPALQTWLWLAFFASFAVKVPMWPVHTWLPDA 238 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+APTAGSV LAG++LKMGGYG +RF +P+FP AS YFAP++F LS++A+IY SLV++V Sbjct: 239 HVEAPTAGSVILAGVLLKMGGYGFLRFSIPMFPEASDYFAPLVFALSVVAVIYTSLVALV 298 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KKLIAYSS+AHMG+VTIG+F+ GVEG++FQMLSHG+VS ALF CVGV+YDRLH Sbjct: 299 QQDMKKLIAYSSVAHMGFVTIGMFTLTTQGVEGSIFQMLSHGVVSGALFLCVGVVYDRLH 358 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR+I AYGGL +NMPRYA+V MVFT+A++GLPGTSGF+GE L++ F+ + +A LA+ Sbjct: 359 TREISAYGGLANNMPRYALVFMVFTLASVGLPGTSGFVGELLILTGAFKVNTWLAALAAT 418 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++L A Y L+LYR+VVFGV + V+ + DLS RE + P+ VL + GIYP D Sbjct: 419 GLILGAAYMLYLYRRVVFGVLDKDSVKAMLDLSPREIALFAPLIVLVFWMGIYPSTFIDM 478 Query: 476 FSVPLSSIIENYTLKTGYSDS 496 SV + ++I NY + G + + Sbjct: 479 MSVSVDNLITNYKVALGEAGT 499 >gi|316933905|ref|YP_004108887.1| proton-translocating NADH-quinone oxidoreductase subunit M [Rhodopseudomonas palustris DX-1] gi|315601619|gb|ADU44154.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris DX-1] Length = 505 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 274/488 (56%), Positives = 357/488 (73%), Gaps = 2/488 (0%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 M P LS+VTFLP LG V L RR+ +AL + I F SL + FD Sbjct: 6 MTWPVLSVVTFLPVLGAALVYLARGEDEAARRNARWIALWTTLITFAVSLLLVWHFDPAN 65 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ +E W+ +YH+G+DGIS+ LV+LTT + PFCI++SW+S+ REYMIAFL Sbjct: 66 PGFQFVEKAPWLGATITYHMGLDGISLPLVILTTAIMPFCIIASWRSVTVRVREYMIAFL 125 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE+++IG F +LD++LFY+FFE LIPMF+IIG+WGG R+YA++KFFLYT GS+ ML Sbjct: 126 ILETLMIGTFSALDLVLFYLFFEGGLIPMFLIIGIWGGPRRVYASFKFFLYTLLGSVLML 185 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI+ + W T+ I L + P +Q W W+AFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 186 LAIMALYWNAGTTDIPTLM-RTPVPGGLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEA 244 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LA I+LKMGGYG +RF LP+FP AS YFAP+I+ LS+IAIIY SLV+++Q DI Sbjct: 245 PTAGSVVLAAILLKMGGYGFLRFSLPMFPDASAYFAPLIYTLSVIAIIYTSLVALMQEDI 304 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMG+VT+GIF+G GV GA+FQM+SHG+VS ALF CVGV+YDR+HTR+I Sbjct: 305 KKLIAYSSVAHMGFVTMGIFAGTTQGVAGAVFQMISHGIVSGALFLCVGVVYDRMHTREI 364 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGGLV+ MP YA+V MVFTMAN+GLPGTSGF+GEFL ++ F+ + A LA+ GV+L Sbjct: 365 AAYGGLVNRMPLYALVFMVFTMANVGLPGTSGFVGEFLTLLGTFRVNVPTATLATTGVIL 424 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LWLYRKVVFG + +KDL+ RE M+ P+ VLT+ FG YP P+ D + Sbjct: 425 SAGYALWLYRKVVFGAMTKPALASIKDLTWREGLMLAPLVVLTILFGFYPKPVLDMSAAS 484 Query: 480 LSSIIENY 487 + ++ NY Sbjct: 485 VQQLVNNY 492 >gi|115524542|ref|YP_781453.1| NADH dehydrogenase subunit M [Rhodopseudomonas palustris BisA53] gi|115518489|gb|ABJ06473.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris BisA53] Length = 505 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 275/490 (56%), Positives = 361/490 (73%), Gaps = 6/490 (1%) Query: 1 MNLPFLSIVTFLPFLG---VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 M P LS+VTFLP LG +FV+ S +R+ +AL + + F SL + FD Sbjct: 6 MTWPILSVVTFLPLLGALAIFVVRGSDE--AAKRNARWIALWATLVTFAVSLILVWRFDP 63 Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + FQ +E W+ YH+GVDGIS+ V+LTT L PFCI++SW SIQ REYM+A Sbjct: 64 TLTDFQFVEKAPWLAAGIGYHMGVDGISLPFVILTTALMPFCIIASWNSIQTRVREYMMA 123 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL+LE+++IG F +LD++LFY+FFE LIPMF+IIGVWGG R+YA +KFFLYT GS+ Sbjct: 124 FLILETLMIGTFAALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYATFKFFLYTLLGSVL 183 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML AI+ + T+ I L + P ++Q W W+AFF SFA+K+PM+P HTWLP+AHV Sbjct: 184 MLLAIMALYLNAGTTDIPTLMN-TAVPRNLQTWAWLAFFASFAVKMPMWPVHTWLPDAHV 242 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LA IMLKMGGYG +RF LP+FPLASQ FAP+IF LS+IAI+Y SLV+++Q Sbjct: 243 EAPTAGSVVLAAIMLKMGGYGFLRFSLPMFPLASQDFAPLIFTLSVIAIVYTSLVALMQE 302 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIKKLIAYSS+AHMG+VT+GIF+G GV G++FQM+SHG+VS ALF CVGVIYDR+HTR Sbjct: 303 DIKKLIAYSSVAHMGFVTMGIFAGTTQGVAGSVFQMISHGIVSGALFLCVGVIYDRMHTR 362 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I AYGGLV+ MP YA+V MVFTMAN+GLPGTSGF+GEFL ++ F+ + A +AS GV Sbjct: 363 EIAAYGGLVNRMPLYALVFMVFTMANVGLPGTSGFVGEFLTLIGTFKVNIPTATVASLGV 422 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +LSA Y+LWLYRKVVFG + ++DL+ RE + P+ VLT+ FG+YP P+ D + Sbjct: 423 ILSAAYALWLYRKVVFGALVKPSLATIQDLTWREGLTLAPLVVLTILFGVYPKPVLDMSA 482 Query: 478 VPLSSIIENY 487 ++ +++NY Sbjct: 483 ASVNLVVQNY 492 >gi|146341101|ref|YP_001206149.1| NADH dehydrogenase subunit M [Bradyrhizobium sp. ORS278] gi|146193907|emb|CAL77924.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M) (NDH-1, chain M) [Bradyrhizobium sp. ORS278] Length = 502 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 270/486 (55%), Positives = 359/486 (73%), Gaps = 2/486 (0%) Query: 4 PFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS+VTFLP +G +I L +R+ +AL + I F S+ + FD + F Sbjct: 5 PILSVVTFLPLVGALLIYLVRGDDEAAQRNARWIALWTTLITFAVSVILVLRFDPNLTDF 64 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E +W+ SYH+GVDGIS+ V+LTT L PFCI++SWKS++ REYM+AFL+LE Sbjct: 65 QFVEKKNWLAAGISYHMGVDGISLPFVILTTALMPFCIIASWKSVKNRLREYMMAFLILE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++++G F +LD++LFY+FFE LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML AI Sbjct: 125 TLMVGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAI 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + + W T+ I L + P S+Q W W+AFF SFA+K+PM+P HTWLP+AHV+APTA Sbjct: 185 MALYWNAGTTDIPTLMH-TAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTA 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LA I+LKMGGYG +RF LP+FPLAS FAP+++ LS IAIIY SLV+++Q DIKKL Sbjct: 244 GSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWTLSAIAIIYTSLVALMQEDIKKL 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHMG+VT+GIF+G GV G +FQM+SHG+VS ALF CVGV+YDR+HTR+I AY Sbjct: 304 IAYSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGVVYDRMHTREIAAY 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGLV+ MP YA+V MVFTMAN+GLPGTSGF+GEF+ ++ F+ S A A+FGV+LSA Sbjct: 364 GGLVNRMPVYALVFMVFTMANVGLPGTSGFVGEFMTLLGTFKVSIPTAFFATFGVILSAA 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y+LWLYRKVVFG + +KDL+ RE +++P+ LT+ FG+YP PI D + + Sbjct: 424 YALWLYRKVVFGALTKPSLASIKDLTWREGMILFPLVALTILFGVYPKPILDMSAASVQQ 483 Query: 483 IIENYT 488 ++ NY Sbjct: 484 LVTNYN 489 >gi|39936003|ref|NP_948279.1| NADH dehydrogenase subunit M [Rhodopseudomonas palustris CGA009] gi|39649857|emb|CAE28379.1| NADH-ubiquinone dehydrogenase chain M [Rhodopseudomonas palustris CGA009] Length = 505 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 274/488 (56%), Positives = 357/488 (73%), Gaps = 2/488 (0%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 M P LS+VTFLP LG V L RR+ ++L + I F SL + FD Sbjct: 6 MTWPVLSVVTFLPVLGAALVYLARGEDEAARRNARWISLWTTLITFAVSLLLVWHFDPAN 65 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ +E W+ +YH+G+DGIS+ LV+LTT + PFCI++SW+S+ REYMIAFL Sbjct: 66 PGFQFVEKAPWLGNTITYHMGLDGISLPLVILTTAIMPFCIIASWRSVTVRVREYMIAFL 125 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE+++IG F +LD++LFY+FFE LIPMF+IIG+WGG R+YA++KFFLYT GS+ ML Sbjct: 126 ILETLMIGTFSALDLVLFYLFFEGGLIPMFLIIGIWGGPRRVYASFKFFLYTLLGSVLML 185 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI+ + W T+ I L S P +Q W W+AFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 186 LAIMALYWNAGTTDIPTLMRTS-VPSGLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEA 244 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LA I+LKMGGYG +RF LP+FP AS YFAP+I+ LS+IAIIY SLV+++Q DI Sbjct: 245 PTAGSVVLAAILLKMGGYGFLRFSLPMFPDASAYFAPLIYTLSVIAIIYTSLVALMQEDI 304 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMG+VT+GIF+G GV GA+FQM+SHG+VS ALF CVGV+YDR+HTR+I Sbjct: 305 KKLIAYSSVAHMGFVTMGIFAGTTQGVAGAVFQMVSHGIVSGALFLCVGVVYDRMHTREI 364 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGGLV+ MP YA+V MVFTMAN+GLPGTSGF+GEFL ++ F+ + A LA+ GV+L Sbjct: 365 AAYGGLVNRMPLYALVFMVFTMANVGLPGTSGFVGEFLTLLGTFRVNIPTATLATTGVIL 424 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LWLYRKVVFG + +KDL+ RE M+ P+ VLT+ FG YP P+ D + Sbjct: 425 SAGYALWLYRKVVFGAMTKPALASIKDLTWREGLMMAPLLVLTILFGFYPKPVLDMSAAS 484 Query: 480 LSSIIENY 487 + ++ NY Sbjct: 485 VQQLVNNY 492 >gi|192291658|ref|YP_001992263.1| NADH dehydrogenase subunit M [Rhodopseudomonas palustris TIE-1] gi|192285407|gb|ACF01788.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris TIE-1] Length = 505 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 273/488 (55%), Positives = 357/488 (73%), Gaps = 2/488 (0%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 M P LS+VTFLP LG V L RR+ ++L + I F SL + FD Sbjct: 6 MTWPVLSVVTFLPVLGAALVYLARGEDEAARRNARWISLWTTLITFAVSLLLVWHFDPAN 65 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ +E W+ +YH+G+DGIS+ LV+LTT + PFCI++SW+S+ REYMIAFL Sbjct: 66 PGFQFVEKAPWLGNTITYHMGLDGISLPLVILTTAIMPFCIIASWRSVTVRVREYMIAFL 125 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE+++IG F +LD++LFY+FFE LIPMF+IIG+WGG R+YA++KFFLYT GS+ ML Sbjct: 126 ILETLMIGTFSALDLVLFYLFFEGGLIPMFLIIGIWGGPRRVYASFKFFLYTLLGSVLML 185 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI+ + W T+ I L S P +Q W W+AFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 186 LAIMALYWNAGTTDIPTLMRTS-VPSGLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEA 244 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LA I+LKMGGYG +RF LP+FP AS YFAP+I+ LS+IAIIY SLV+++Q DI Sbjct: 245 PTAGSVVLAAILLKMGGYGFLRFSLPMFPDASAYFAPLIYTLSVIAIIYTSLVALMQEDI 304 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMG+VT+GIF+G GV GA+FQM+SHG+VS ALF CVGV+YDR+HTR+I Sbjct: 305 KKLIAYSSVAHMGFVTMGIFAGTTQGVAGAVFQMVSHGIVSGALFLCVGVVYDRMHTREI 364 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGGLV+ MP YA+V +VFTMAN+GLPGTSGF+GEFL ++ F+ + A LA+ GV+L Sbjct: 365 AAYGGLVNRMPLYALVFLVFTMANVGLPGTSGFVGEFLTLLGTFRVNIPTATLATTGVIL 424 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LWLYRKVVFG + +KDL+ RE M+ P+ VLT+ FG YP P+ D + Sbjct: 425 SAGYALWLYRKVVFGAMTKPALASIKDLTWREGLMMAPLLVLTILFGFYPKPVLDMSAAS 484 Query: 480 LSSIIENY 487 + ++ NY Sbjct: 485 VQQLVNNY 492 >gi|182679340|ref|YP_001833486.1| proton-translocating NADH-quinone oxidoreductase, chain M [Beijerinckia indica subsp. indica ATCC 9039] gi|182635223|gb|ACB95997.1| proton-translocating NADH-quinone oxidoreductase, chain M [Beijerinckia indica subsp. indica ATCC 9039] Length = 507 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 273/483 (56%), Positives = 361/483 (74%), Gaps = 2/483 (0%) Query: 6 LSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS + FLP +G +F+ L R S AL + I F S++ ++ FD S+FQ+ Sbjct: 7 LSALIFLPLVGALFIALLPGDSEASRSSARWAALITTLITFALSVYAYTQFDPASSAFQL 66 Query: 65 IEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 IE W Y LGVDG+SI +VLT FL PFCIL+SW+SIQ +EYM+AFL+LES+ Sbjct: 67 IEEKSWFGLGLVYKLGVDGMSIPFLVLTAFLMPFCILASWESIQTRVKEYMVAFLILESL 126 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F +LD +LFY+FFE SLIPMF+IIG+WGG RIYA++KFFLYT GS+ ML A++ Sbjct: 127 LLGVFTALDTILFYLFFEGSLIPMFLIIGIWGGPRRIYASFKFFLYTLVGSLLMLLAVMA 186 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 M T+ I L + FP S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV+APTAGS Sbjct: 187 MYGIAGTTDITVLLK-TAFPASMQKWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 V LAGI+LKMGGYG IRF LP+FP AS YFAP++F LS+IAIIY SLV++VQ DIKKLIA Sbjct: 246 VILAGILLKMGGYGFIRFSLPMFPEASAYFAPLVFALSVIAIIYTSLVALVQNDIKKLIA 305 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+AHMG+VT+G+FS + GV+GA+FQM+SHG+V+SALF CVGV+YDRLHTRDI AYGG Sbjct: 306 YSSVAHMGFVTMGLFSMTEQGVQGAIFQMVSHGIVASALFLCVGVVYDRLHTRDIAAYGG 365 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +V MPRY M+FTMAN+GLPGTSGFIGEFL ++ FQ ++TV + A+ GV+ SA Y+ Sbjct: 366 IVERMPRYGTAFMIFTMANVGLPGTSGFIGEFLTMIGTFQINSTVVLFAATGVIFSAAYA 425 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 L+LYR+V+FG + ++ L DLS RE ++ P+ VLT+++G++P PI D + + ++I Sbjct: 426 LYLYRRVLFGALEKANLKTLLDLSGREIALLAPLIVLTLYYGVHPAPILDGCAASVEALI 485 Query: 485 ENY 487 Y Sbjct: 486 RGY 488 >gi|86749704|ref|YP_486200.1| NADH dehydrogenase subunit M [Rhodopseudomonas palustris HaA2] gi|86572732|gb|ABD07289.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris HaA2] Length = 505 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 273/488 (55%), Positives = 356/488 (72%), Gaps = 2/488 (0%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 M P LS+VTFLP +G V L RR+ ++L + I F SL + FD Sbjct: 6 MTWPVLSVVTFLPLVGAALVYLARGDDEAARRNARWISLWTTLITFAVSLILVWRFDAAD 65 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ +E W+ ++H+GVDGIS+ V+LTT L PFCIL+SWKSI REYM+AFL Sbjct: 66 PGFQFVEKAPWLGATIAFHMGVDGISLPFVILTTALMPFCILASWKSITVRVREYMMAFL 125 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VLE+++IG F +LD++LFY+FFE LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML Sbjct: 126 VLETLMIGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLML 185 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI+ + W T+ I L + P ++Q W W+AFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 186 LAIMALYWTAGTTDIPTLMT-TAIPRNLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEA 244 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LA IMLKMGGYG +RF LP+FP AS YFAP++F LS+IAI+Y SLV+++Q DI Sbjct: 245 PTAGSVVLAAIMLKMGGYGFLRFSLPMFPDASVYFAPLVFSLSVIAIVYTSLVALMQEDI 304 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMG+VT+GIF+G GV G++FQM+SHG+VS ALF CVGVIYDR+HTR+I Sbjct: 305 KKLIAYSSVAHMGFVTMGIFAGNTQGVAGSVFQMISHGIVSGALFLCVGVIYDRMHTREI 364 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGGLV+ MP YA V +VFTMAN+GLPGTSGF+GEFL ++ F+ + A +A+ GV+L Sbjct: 365 AAYGGLVNRMPIYAFVFLVFTMANVGLPGTSGFVGEFLTLLGTFRVNVPTATIATLGVIL 424 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LWLYRKVVFG + +KDL+ RE ++ P+ VLT+ FG YP P+ D + Sbjct: 425 SAAYALWLYRKVVFGALTKPALADIKDLTWREGIILAPLVVLTILFGFYPKPVLDMSAAS 484 Query: 480 LSSIIENY 487 + ++ NY Sbjct: 485 VQQLVNNY 492 >gi|209885064|ref|YP_002288921.1| NADH-quinone oxidoreductase subunit m [Oligotropha carboxidovorans OM5] gi|209873260|gb|ACI93056.1| NADH-quinone oxidoreductase subunit m [Oligotropha carboxidovorans OM5] Length = 501 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 267/485 (55%), Positives = 358/485 (73%), Gaps = 2/485 (0%) Query: 4 PFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS++TFLP +G ++ L G+R+ +AL + INF SL FD + F Sbjct: 5 PVLSVITFLPAVGALLVYLVRGDDEAGKRNARWIALWTTLINFAISLVPLLRFDASQPGF 64 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q E+ W+ +YH+GVDGIS+ V+LTT L PF IL+SWKSIQ REYM+AFLVLE Sbjct: 65 QFEEHAQWLGAAMNYHMGVDGISLPFVILTTALMPFAILASWKSIQVRVREYMMAFLVLE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++++G F +LD++LFY+FFE LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML AI Sbjct: 125 TLMVGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLAI 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + + + T+ I L +K P ++Q W W+AFF SFA+K+PM+P HTWLP+AHV+APTA Sbjct: 185 MALYAQAGTTDIPTLMT-TKLPHNLQIWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTA 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LA I+LKMGGYG +RF LP+FPLAS FAP+++ LS+IAIIY SLV+++Q D+KKL Sbjct: 244 GSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWTLSVIAIIYTSLVALMQEDMKKL 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHMG+VT+GIF+G GV G +FQM+SHG+VS ALF CVGVIYDR+HTR+I AY Sbjct: 304 IAYSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGVIYDRMHTREIAAY 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGLV+ MP YA ++FTMAN+GLPGTSGF+GEF+ ++ F+ S A LA+ GV+LSA Sbjct: 364 GGLVNRMPLYAFTFLLFTMANVGLPGTSGFVGEFMTLLGTFKVSVATAFLATIGVILSAG 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y+LWLYRK+VFG + +KD++ RE + P+ +LT+ FG+YP P+ D + + Sbjct: 424 YALWLYRKIVFGELTKPSLASIKDMTGREITLFVPLIILTILFGVYPKPVLDLSAASVHQ 483 Query: 483 IIENY 487 ++ENY Sbjct: 484 LVENY 488 >gi|91977343|ref|YP_570002.1| NADH dehydrogenase subunit M [Rhodopseudomonas palustris BisB5] gi|91683799|gb|ABE40101.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris BisB5] Length = 505 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 268/488 (54%), Positives = 355/488 (72%), Gaps = 2/488 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLG-CGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 M P LS+VTFLP +G ++ S RR+ +AL + I F SL + +D Sbjct: 6 MTWPVLSVVTFLPVVGAALVYLSRGDDEAARRNARWIALWTTLITFAVSLILLWRYDAAN 65 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ +E W+ YH+GVDGIS+ V+LTT L PFCI++SWKS+ REYM+AFL Sbjct: 66 PGFQFVEKAPWLASGIGYHMGVDGISLPFVILTTALMPFCIIASWKSVTMRVREYMMAFL 125 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VLE+++IG F +LD++LFY+FFE LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML Sbjct: 126 VLETLMIGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLML 185 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI+ + W T+ I L + P ++Q W W+AFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 186 LAIMALYWTAGTTDIPTLMN-TAVPRNLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEA 244 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LA I+LKMGGYG +RF LP+FP AS YFAP+++ LS+IAI+Y SLV+++Q DI Sbjct: 245 PTAGSVVLAAILLKMGGYGFLRFSLPMFPEASLYFAPLVYALSVIAIVYTSLVALMQEDI 304 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMG+VT+GIF+G GV G++FQM+SHG+VS ALF CVGV+YDR+HTR+I Sbjct: 305 KKLIAYSSVAHMGFVTMGIFAGNTQGVAGSVFQMISHGIVSGALFLCVGVVYDRMHTREI 364 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGGLV+ MP YA V +VFTMAN+GLPGTSGF+GEFL ++ F+ + A +A+ GV+L Sbjct: 365 AAYGGLVNRMPIYAFVFLVFTMANVGLPGTSGFVGEFLTLLGTFRVNIPTATIATLGVIL 424 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LWLYRKVVFG + +KDL+ RE + P+ VLT+ FG YP P+ D + Sbjct: 425 SAAYALWLYRKVVFGTLTKPALGTIKDLTWREGITLAPLVVLTILFGFYPKPVLDMSAAS 484 Query: 480 LSSIIENY 487 + ++ NY Sbjct: 485 VQQLVNNY 492 >gi|27380016|ref|NP_771545.1| NADH dehydrogenase subunit M [Bradyrhizobium japonicum USDA 110] gi|27353170|dbj|BAC50170.1| NADH dehydrogenase I chain M [Bradyrhizobium japonicum USDA 110] Length = 502 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 264/486 (54%), Positives = 352/486 (72%), Gaps = 2/486 (0%) Query: 4 PFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS+ TFLP +G ++ L RR+ +AL + I F S+ + FD + F Sbjct: 5 PILSVTTFLPLVGALIVYLTRGDDEAARRNSRWIALWTTLITFAVSVILVMRFDPSNADF 64 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E +W+ +YH+GVDGIS+ V+LTT L P CI++SWKS+ REYM+AFL+LE Sbjct: 65 QFVEKANWLATGITYHMGVDGISLPFVILTTALMPICIIASWKSVTSRVREYMMAFLILE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + ++G F +LD++LFY+FFE LIPMF+IIG+WGG R+YA++KFFLYT GS+ ML AI Sbjct: 125 TFLVGTFAALDLVLFYLFFEGGLIPMFLIIGIWGGPRRVYASFKFFLYTLLGSVLMLLAI 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + + W T+ I L + P S+Q W W+AFF SFA+K+PM+P HTWLP+AHV+APTA Sbjct: 185 MALYWNGATTDIPTLMH-TAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPTA 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LA I+LK+GGYG +RF LP+FPLAS FAP+IF LS+IAIIY SLV+++Q D+KKL Sbjct: 244 GSVVLAAILLKLGGYGFLRFSLPMFPLASHDFAPLIFTLSVIAIIYTSLVALMQEDMKKL 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHMG+VT+GIF+G GV G +FQM+SHG+VS ALF CVG++YDR+HTR+I AY Sbjct: 304 IAYSSVAHMGFVTMGIFAGTLQGVAGGVFQMISHGIVSGALFLCVGIVYDRMHTREIAAY 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGLV+ MP YA+ MVFTMAN+GLPGTSGF+GEF+ ++ F+ S A AS GV+LSA Sbjct: 364 GGLVNRMPLYALTFMVFTMANVGLPGTSGFVGEFMTLLGTFKTSIPTAFFASTGVILSAC 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y+LWLYRKVVFG + +KDL+ RE ++P+ LT+ FGIYP P+ D + Sbjct: 424 YALWLYRKVVFGTLVKPSLMTIKDLTFRECLTLFPLIALTILFGIYPKPVLDMSEASVQQ 483 Query: 483 IIENYT 488 ++ NY Sbjct: 484 LVNNYN 489 >gi|75676066|ref|YP_318487.1| NADH dehydrogenase subunit M [Nitrobacter winogradskyi Nb-255] gi|74420936|gb|ABA05135.1| NADH dehydrogenase subunit M [Nitrobacter winogradskyi Nb-255] Length = 502 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 263/486 (54%), Positives = 352/486 (72%), Gaps = 3/486 (0%) Query: 4 PFLSIVTFLPFLGVFVI--LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 P LS+ TFLP +G +I + R+ +AL + + F SL + + FD + Sbjct: 5 PILSVTTFLPAVGAILIYVMARGSDEAANRTARWIALWTTIVTFAVSLLLVTRFDPTNTG 64 Query: 62 FQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 FQ +E W+ YH+GVDGIS+ V+LTT L P CI++SWKSI YM+AFLVL Sbjct: 65 FQFVEQATWLATGIRYHMGVDGISLPFVILTTALMPLCIIASWKSITRRVPAYMMAFLVL 124 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 E+++IG F +LD+LLFY+FFE LIPMF+IIG+WGG R+YA +KFFLYT GS+ ML A Sbjct: 125 ETLMIGTFSALDLLLFYVFFEGGLIPMFLIIGIWGGPRRVYATFKFFLYTLLGSVLMLLA 184 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 I+ + W T+ I L S P+++Q W W+AFF SFA+K+PM+P HTWLP+AHV+APT Sbjct: 185 IMALYWNAGTTDIPTLMQTS-VPYNLQKWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPT 243 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LA IMLKMGGYG +RF LP+FPLAS FAP++F LS +AI+Y SLV+++Q D+KK Sbjct: 244 AGSVILAAIMLKMGGYGFLRFSLPMFPLASHDFAPLVFVLSAVAIVYTSLVALMQEDMKK 303 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+AHMG+VT+GIF+G G+ G +FQM+SHG+VS ALF CVGV+YDR+HTR+I A Sbjct: 304 LIAYSSVAHMGFVTMGIFAGTMQGIHGGVFQMVSHGIVSGALFLCVGVVYDRMHTREIAA 363 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGGLV+ MP YA+V ++FTMAN+GLPGTSGF+GEFL ++ F+ S AV A+ GV+LSA Sbjct: 364 YGGLVNRMPLYALVFLIFTMANVGLPGTSGFVGEFLALIGTFKVSIPTAVAATLGVILSA 423 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LWLYRK+VFG + +KDL+ RE + P+ VLT+ FG+YP P+ D + + Sbjct: 424 AYALWLYRKIVFGALVKPSLASIKDLTFREGLTLAPLVVLTILFGVYPKPVLDFSAASVQ 483 Query: 482 SIIENY 487 +++ NY Sbjct: 484 NLVNNY 489 >gi|144900798|emb|CAM77662.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Magnetospirillum gryphiswaldense MSR-1] Length = 504 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 267/499 (53%), Positives = 366/499 (73%), Gaps = 3/499 (0%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS+ TFLP LG +F++ R+ VAL S F+ SLF+ FD + Sbjct: 3 DWPLLSLTTFLPLLGALFILAIRGEAQVVARNARNVALLTSVATFVVSLFILGYFDAASA 62 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ+ E W+ +Y +GVDGIS+ V+L TFLTP CILSS ++++ +EYM+AFL Sbjct: 63 EFQLKESAVWLPGTAITYSMGVDGISVWFVLLATFLTPICILSSVGAVEKRVKEYMVAFL 122 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VLE+M++G F +LDM+LFY+FFE L+PMF+IIGVWGG+ R+YAAYK FLYT GS+ ML Sbjct: 123 VLETMMVGMFCALDMVLFYVFFEGVLLPMFIIIGVWGGARRVYAAYKLFLYTLLGSVLML 182 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ M ++ +T+ I L A S FP ++Q W+W+AFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 183 VAMLAMYFDARTTDIPTLMAHS-FPQAMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAG++LKMG YG IRF +P+FPLA++YF P+++ LS++A+IY SLV++VQ D+ Sbjct: 242 PTAGSVILAGVLLKMGAYGFIRFSVPMFPLATEYFTPLVYTLSIVAVIYTSLVALVQEDM 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMGYVTIGIFS GVEGA++QMLSHG+VS ALF CVGV+YDR+HTR+I Sbjct: 302 KKLIAYSSVAHMGYVTIGIFSMTTQGVEGALYQMLSHGVVSGALFLCVGVVYDRMHTREI 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGGL MP+YA+V M TMA++GLPGT GFIGEFLV++ VFQ + VA+ A+ G+VL Sbjct: 362 ARYGGLAERMPKYALVFMFMTMASVGLPGTGGFIGEFLVLLGVFQVNTWVALFAATGLVL 421 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 A Y+L+LYR+VVFG + ++ + DLS RE M P+ V+ ++ GIYP+ + Sbjct: 422 GAAYALYLYRRVVFGRLTRDDLKSILDLSPREVLMFAPLIVIVIWMGIYPITFLEPMHAS 481 Query: 480 LSSIIENYTLKTGYSDSVK 498 ++ +I+NY L ++S+ Sbjct: 482 VAKLIDNYELARAAAESLS 500 >gi|163850505|ref|YP_001638548.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacterium extorquens PA1] gi|163662110|gb|ABY29477.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacterium extorquens PA1] Length = 527 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 256/476 (53%), Positives = 352/476 (73%), Gaps = 2/476 (0%) Query: 12 LPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 +P G F++ +R+ AL + + F+ SL W+ +D SFQ++E + W Sbjct: 13 VPLAGAAFILTLGEETAAVKRNARWAALITTVVTFLLSLAAWARYDIASPSFQLVESHAW 72 Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 + + LGVDG S+ L++LTTFL PFCI +SW S++ +EY +AFLVLE+ +IG F Sbjct: 73 LAETIRFKLGVDGFSMPLILLTTFLMPFCIGASWLSVENRVKEYFVAFLVLETTMIGVFC 132 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +LD++LFY+FFEA LIPMF+IIG+WGG RIYA++KFFLYT GS+ ML AI+ M WE Sbjct: 133 ALDLVLFYLFFEAGLIPMFLIIGIWGGKRRIYASFKFFLYTLLGSVLMLLAIMAMYWEAG 192 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 T+ I L A +FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+APTAGSV LAGI Sbjct: 193 TTDIPTLLA-HRFPVHMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LKMGGYG IR LP+ P AS FAP++F LS+IAII+ SL +M+QTDIKKLIAYSS+AH Sbjct: 252 LLKMGGYGFIRISLPMLPDASAQFAPLVFALSVIAIIFTSLTAMMQTDIKKLIAYSSVAH 311 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG+VT+G+F+ + G++GA+F M+SHG+VS ALF CVGV+YDR+HTR+I AYGGLV MP Sbjct: 312 MGFVTLGLFTLNEQGIQGALFLMISHGIVSGALFLCVGVVYDRMHTREIAAYGGLVKRMP 371 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 YA MMVFTMAN+GLPGTSGF+GEFL +M F+ + TVA + FG++LSA Y+LWLY + Sbjct: 372 LYAAAMMVFTMANVGLPGTSGFVGEFLAMMGAFKANPTVAFFSVFGIILSAGYALWLYAR 431 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 V++G +Q + DL RE+ ++ P+ LT+++G++P P+ DTF+ ++++N Sbjct: 432 VIYGKLDKPNLQGILDLDTREKIIIAPLVALTIWYGVHPAPVLDTFAPSTEALVQN 487 >gi|188580273|ref|YP_001923718.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacterium populi BJ001] gi|179343771|gb|ACB79183.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacterium populi BJ001] Length = 527 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 256/476 (53%), Positives = 353/476 (74%), Gaps = 2/476 (0%) Query: 12 LPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 +P G F++ +R+ AL + + F+ SL W+ +D SFQ++E + W Sbjct: 13 VPLAGAAFILTLGEETAAVKRNARWAALITTVVTFLLSLVAWARYDIASPSFQLVESHAW 72 Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 + + LGVDG S+ L++LTTFL PFCI +SW S++ +EY +AFLVLE+ +IG F Sbjct: 73 LAETIRFKLGVDGFSMPLILLTTFLMPFCIGASWLSVENRVKEYFVAFLVLETTMIGVFC 132 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +LD++LFY+FFEA LIPMF+IIG+WGG RIYA++KFFLYT GS+ ML AI+ M WE Sbjct: 133 ALDLVLFYLFFEAGLIPMFLIIGIWGGKRRIYASFKFFLYTLLGSVLMLLAIMAMYWEAG 192 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 T+ I L A +FP +Q+W+W+AFF SFA+K+PM+P HTWLP+AHV+APTAGSV LAGI Sbjct: 193 TTDIPTLLA-HRFPVGLQWWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LKMGGYG IR LP+ P AS FAP++F LS+IAII+ SL +M+QTDIKKLIAYSS+AH Sbjct: 252 LLKMGGYGFIRISLPMLPDASASFAPLVFALSVIAIIFTSLTAMMQTDIKKLIAYSSVAH 311 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG+VT+G+F+ + G++GA+F M+SHG+VS ALF CVGV+YDR+HTR+I AYGGLV MP Sbjct: 312 MGFVTLGLFTLNEQGIQGALFLMISHGIVSGALFLCVGVVYDRMHTREIAAYGGLVKRMP 371 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 YA MMVFTMAN+GLPGTSGF+GEFL +M F+ + TVA + FG++LSA Y+LWLY + Sbjct: 372 LYAAAMMVFTMANVGLPGTSGFVGEFLAMMGAFRANPTVAFFSVFGIILSAGYALWLYAR 431 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 V++G +Q + DL RE+ ++ P+ LT+++G++P P+ DTF+ ++++N Sbjct: 432 VIYGKLDKPNLQGILDLDNREKIIIAPLVALTIWYGVHPAPVLDTFAPSTEALMQN 487 >gi|85717017|ref|ZP_01047979.1| NADH dehydrogenase subunit M [Nitrobacter sp. Nb-311A] gi|85696141|gb|EAQ34037.1| NADH dehydrogenase subunit M [Nitrobacter sp. Nb-311A] Length = 502 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 262/486 (53%), Positives = 351/486 (72%), Gaps = 3/486 (0%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLG--CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 P LS+ TFLP +G +I + G R+ +AL + + SL + FD + Sbjct: 5 PILSVTTFLPAVGAVLIYVMARGGDEAANRTARWIALWTTIVTLAVSLILVDRFDPANTG 64 Query: 62 FQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 FQ +E W+ YH+GVDGIS+ V+LTT L P CI++SWKSI YM+AFL+L Sbjct: 65 FQFVEQATWLATGIRYHMGVDGISLPFVILTTALMPLCIVASWKSIARRVPAYMMAFLIL 124 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 E+++IG F +LD+LLFY+FFE LIPMF+IIG+WGG R+YA +KFFLYT GS+ ML A Sbjct: 125 ETLMIGTFSALDLLLFYVFFEGGLIPMFLIIGIWGGPRRVYATFKFFLYTLLGSVLMLLA 184 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 I+ + W T+ I L + P+++Q W W+AFF SFA+K+PM+P HTWLP+AHV+APT Sbjct: 185 IMALYWNAGTTDIPTLM-QTAVPYNLQKWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPT 243 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LA I+LKMGGYG +RF LP+FPLAS FAP++F LS +AI+Y SLV+++Q D+KK Sbjct: 244 AGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLVFVLSAVAIVYTSLVALMQEDMKK 303 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+AHMG+VT+GIF+G G+ G +FQM+SHG+VS ALF CVGV+YDR+HTR+I A Sbjct: 304 LIAYSSVAHMGFVTMGIFAGTMQGIHGGVFQMVSHGIVSGALFLCVGVVYDRMHTREIAA 363 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGGLV+ MP YA+V +VFTMAN+GLPGTSGF+GEFL ++ F+ S AV A+ GV+LSA Sbjct: 364 YGGLVNRMPLYALVFLVFTMANVGLPGTSGFVGEFLSLIGTFKVSIPTAVAATLGVILSA 423 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LWLYRK+VFG + +KDL+ RE + P+ VLTV FG+YP P+ D + + Sbjct: 424 AYALWLYRKIVFGALVKPSLATIKDLTFREGLTLAPLVVLTVLFGVYPKPVLDFSAASVQ 483 Query: 482 SIIENY 487 +++ NY Sbjct: 484 NLVNNY 489 >gi|218529202|ref|YP_002420018.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacterium chloromethanicum CM4] gi|240137570|ref|YP_002962041.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M) [Methylobacterium extorquens AM1] gi|254560041|ref|YP_003067136.1| NADH-quinone oxidoreductase subunit M [Methylobacterium extorquens DM4] gi|218521505|gb|ACK82090.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacterium chloromethanicum CM4] gi|240007538|gb|ACS38764.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M) [Methylobacterium extorquens AM1] gi|254267319|emb|CAX23151.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M) [Methylobacterium extorquens DM4] Length = 527 Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust. Identities = 256/476 (53%), Positives = 352/476 (73%), Gaps = 2/476 (0%) Query: 12 LPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 +P G F++ +R+ AL + + F+ SL W+ +D SFQ++E + W Sbjct: 13 VPLAGAAFILTLGEETAAVKRNARWAALITTIVTFLLSLAAWARYDIASPSFQLVESHAW 72 Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 + + LGVDG S+ L++LTTFL PFCI +SW S++ +EY +AFLVLE+ +IG F Sbjct: 73 LAETIRFKLGVDGFSMPLILLTTFLMPFCIGASWLSVENRVKEYFVAFLVLETTMIGVFC 132 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +LD++LFY+FFEA LIPMF+IIG+WGG RIYA++KFFLYT GS+ ML AI+ M WE Sbjct: 133 ALDLVLFYLFFEAGLIPMFLIIGIWGGKRRIYASFKFFLYTLLGSVLMLLAIMAMYWEAG 192 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 T+ I L A +FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+APTAGSV LAGI Sbjct: 193 TTDIPTLLA-HRFPVHMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGI 251 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LKMGGYG IR LP+ P AS FAP++F LS+IAII+ SL +M+QTDIKKLIAYSS+AH Sbjct: 252 LLKMGGYGFIRISLPMLPDASAQFAPLVFALSVIAIIFTSLTAMMQTDIKKLIAYSSVAH 311 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG+VT+G+F+ + G++GA+F M+SHG+VS ALF CVGV+YDR+HTR+I AYGGLV MP Sbjct: 312 MGFVTLGLFTLNEQGIQGALFLMISHGIVSGALFLCVGVVYDRMHTREIAAYGGLVKRMP 371 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 YA MMVFTMAN+GLPGTSGF+GEFL +M F+ + TVA + FG++LSA Y+LWLY + Sbjct: 372 LYAAAMMVFTMANVGLPGTSGFVGEFLAMMGAFKANPTVAFFSVFGIILSAGYALWLYAR 431 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 V++G +Q + DL RE+ ++ P+ LT+++G++P P+ DTF+ ++++N Sbjct: 432 VIYGKLDKPNLQGILDLDTREKIIIAPLVALTIWYGVHPAPVLDTFAPSTEALVQN 487 >gi|288958977|ref|YP_003449318.1| NADH dehydrogenase I chain M [Azospirillum sp. B510] gi|288911285|dbj|BAI72774.1| NADH dehydrogenase I chain M [Azospirillum sp. B510] Length = 508 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 266/503 (52%), Positives = 367/503 (72%), Gaps = 12/503 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCG------RRSFFGVALGISTINFIFSLFVWSVFDK 57 P LS TFLP +GV +IL L C RR+ +AL + + F+ +L +W+ FD Sbjct: 5 PILSFATFLPLVGVALIL----LFCRGDSPDVRRNVRYIALWTTLVTFVLTLLIWANFDP 60 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 +QM+E WI F +YH+GVDGIS+L VVL+ FL P CIL+SW+S+Q +EYMI Sbjct: 61 RNPGYQMVEKAGWIPEFGINYHMGVDGISVLFVVLSGFLMPLCILASWESVQVRLKEYMI 120 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 AFL LE+++IG F +LD +LFY+FFE LIPMF+IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 121 AFLALETLMIGMFCALDFVLFYMFFEGVLIPMFLIIGVWGGPRRVYAAFKFFLYTLLGSV 180 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML AI+ M + T+ I + A ++FP +Q W+W+AFF SFA+K+PM+P HTWLP+AH Sbjct: 181 LMLLAILAMYYVAGTTDIPTITA-TQFPRGMQLWLWLAFFASFAVKVPMWPVHTWLPDAH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APTAGSV LAG++LKMGGYG +RF +P+ P A++YFAP+I+ LS++A+IY SLV++ Q Sbjct: 240 VEAPTAGSVILAGVLLKMGGYGFLRFNIPILPEATEYFAPLIYTLSVVAVIYTSLVALAQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+KKLIAYSS+AHMG+VTIG+F+ + G+EG++FQMLSHG+VS ALF CVGV+YDRLHT Sbjct: 300 EDMKKLIAYSSVAHMGFVTIGMFALNQQGIEGSVFQMLSHGVVSGALFLCVGVVYDRLHT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R+I YGGLV NMP+YAVV + TMA++GLPGT+GF+GEFLV+M VF+++ VA LA+ G Sbjct: 360 REIARYGGLVKNMPKYAVVFLFMTMASVGLPGTAGFVGEFLVLMGVFRDNTWVAALAATG 419 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 +VL A Y+LWLYR++V+G ++ + D++ RE + P+ + ++ GIYP + Sbjct: 420 MVLGAAYALWLYRRIVYGKLTKPDLKAMFDMTPREIAVFLPLIAVVLWMGIYPSSFLNVT 479 Query: 477 SVPLSSIIENYTLKTGYSDSVKG 499 S + +I+ Y K S + G Sbjct: 480 SASVEQLIQTYQTKLAASHAASG 502 >gi|299135020|ref|ZP_07028211.1| proton-translocating NADH-quinone oxidoreductase, chain M [Afipia sp. 1NLS2] gi|298589997|gb|EFI50201.1| proton-translocating NADH-quinone oxidoreductase, chain M [Afipia sp. 1NLS2] Length = 502 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 266/486 (54%), Positives = 351/486 (72%), Gaps = 3/486 (0%) Query: 4 PFLSIVTFLPFLGVFVI--LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 P LS+ TFLP G ++ L R+ +AL + I F SL + FD + Sbjct: 5 PVLSVTTFLPVAGAVLLYLLARGNDAVAARNARWIALWTTVITFAVSLVLLLHFDPSQPG 64 Query: 62 FQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 FQ +E W+ +YH+GVDGIS+ V+LTT L PFCIL+SWKSIQ REYM+AFL L Sbjct: 65 FQFVEKGQWLGAAINYHMGVDGISLPFVILTTALMPFCILASWKSIQNRVREYMMAFLFL 124 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 E+++IG F SLD++LFY+FFE LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML A Sbjct: 125 ETLMIGTFSSLDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLMLLA 184 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 I+ + + T+ I L + P ++Q W W+AFF SFA+K+PM+P HTWLP+AHV+APT Sbjct: 185 IMALYAKAGTTDIPTLMT-TNLPHNLQRWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPT 243 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LA I+LKMGGYG +RF LP+FPLAS FAP+++ LS IAI+Y SLV+++Q D+KK Sbjct: 244 AGSVVLAAILLKMGGYGFLRFSLPMFPLASHDFAPLVWTLSAIAIVYTSLVALMQEDMKK 303 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+AHMG+VT+GIF+G GV G +FQM+SHG+VS ALF CVGVIYDR+HTR+I A Sbjct: 304 LIAYSSVAHMGFVTMGIFAGTMQGVAGGVFQMISHGIVSGALFLCVGVIYDRMHTREIAA 363 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGGLV+ MP YA ++FTMAN+GLPGTSGF+GEFL ++ F+ S A+ A+ GV+LSA Sbjct: 364 YGGLVNRMPLYAFTFLLFTMANVGLPGTSGFVGEFLTLLGTFKVSVPTAIFATLGVILSA 423 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LWLYRK+VFG + +KD++ RE + P VLT+ FG+YP P+ D + + Sbjct: 424 AYALWLYRKIVFGEMTKASLASIKDMTGREIAIFVPFIVLTILFGVYPKPVLDMSAASIH 483 Query: 482 SIIENY 487 ++ENY Sbjct: 484 QLVENY 489 >gi|298291834|ref|YP_003693773.1| proton-translocating NADH-quinone oxidoreductase, chain M [Starkeya novella DSM 506] gi|296928345|gb|ADH89154.1| proton-translocating NADH-quinone oxidoreductase, chain M [Starkeya novella DSM 506] Length = 504 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 276/487 (56%), Positives = 361/487 (74%), Gaps = 3/487 (0%) Query: 2 NLPFLSIVTFLPFLGVF--VILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 + P LS+VTFLP +G V++ +R+ VAL + + F+ SL + + FD Sbjct: 3 DWPILSVVTFLPLVGALLIVLMIRGDDEVAQRNARWVALWATLVTFVISLLLLAGFDMAG 62 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + FQ +E+ W+ F +Y +GVDGIS+ ++LTT L P CIL+SW+SI +EYMI FL Sbjct: 63 TEFQFVEHRAWLGDFAAYRMGVDGISLPFLLLTTLLMPMCILASWESIHVRVKEYMICFL 122 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VLE+++IG F SLD+L FYIFFE LIPMF+IIG+WGG RIYA +KFFLYT GS+ M+ Sbjct: 123 VLETLMIGTFASLDLLQFYIFFEGGLIPMFLIIGIWGGKRRIYATFKFFLYTLAGSVLMM 182 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI+ M W+ T+ I L FP +QYW+WIAFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 183 LAIMAMYWQAGTTDIAVLLK-HGFPSRMQYWLWIAFFASFAVKMPMWPVHTWLPDAHVEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAGI+LKMGGYG +RF LP+FP AS YFAP +F LS+IAI+Y SLV+++Q DI Sbjct: 242 PTAGSVILAGILLKMGGYGFLRFSLPMFPEASAYFAPFVFTLSVIAIVYTSLVALMQEDI 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSSIAHMGYVT+GIF+ + G++GA+FQM+SHG VS ALF CVGVIYDR+HTR+I Sbjct: 302 KKLIAYSSIAHMGYVTMGIFTLTQEGIQGAVFQMVSHGFVSGALFLCVGVIYDRMHTREI 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGG+VH MP YA V MVFTMAN+GLPGTSGFIGEFL +++ F + VA A+ GV+L Sbjct: 362 AAYGGIVHRMPLYATVFMVFTMANVGLPGTSGFIGEFLTLLATFGRNTWVAFFATTGVIL 421 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LWLYR+V+FG + E ++ L DLS RE + P+ +LT+ FG++P PI D +V Sbjct: 422 SAAYALWLYRRVIFGALEKESLKGLTDLSGREMLSLVPLLLLTILFGVWPQPILDACNVA 481 Query: 480 LSSIIEN 486 + +I+ Sbjct: 482 VGAIVAR 488 >gi|217979061|ref|YP_002363208.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylocella silvestris BL2] gi|217504437|gb|ACK51846.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylocella silvestris BL2] Length = 503 Score = 541 bits (1395), Expect = e-152, Method: Compositional matrix adjust. Identities = 267/494 (54%), Positives = 362/494 (73%), Gaps = 2/494 (0%) Query: 6 LSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS + FLP +G F++ + A + I F+ +++ ++ FD S FQ+ Sbjct: 7 LSCIVFLPLVGAAFILCLRGEDEATLNNARWAAFATTVIVFLLTVYAYAKFDTSLSGFQL 66 Query: 65 IEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 +E W Y LGVDG+SI V+LT FL PFCI +SWKSI ++YMIAFLVLE+M Sbjct: 67 VEQKGWFGSGLIYKLGVDGVSIPFVLLTGFLMPFCIAASWKSITYRVKDYMIAFLVLETM 126 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F +LD++LFY+FFE LIPMF+IIG+WGG R+YA++KFFLYT GS+ ML AI+ Sbjct: 127 MLGVFCALDLVLFYLFFEGGLIPMFLIIGIWGGKRRVYASFKFFLYTLVGSLLMLLAIMA 186 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 M T+ I+ L A S FP S+Q W+++AFF S A+K+PM+P HTWLP+AHV+APTAGS Sbjct: 187 MYGFAGTTDIVQLLATS-FPASMQKWLFLAFFASLAVKMPMWPVHTWLPDAHVEAPTAGS 245 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 V LAGI+LKMGGYG IRF LP+FP AS YFAP+I+ LS+IAIIY SLV++VQ D+KKLIA Sbjct: 246 VILAGILLKMGGYGFIRFSLPMFPDASAYFAPLIYALSIIAIIYTSLVALVQEDMKKLIA 305 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+AHMG+VT+G+F+ + GV+GAMFQM+SHGLVS ALF CVGV+YDR+HTRDI AYGG Sbjct: 306 YSSVAHMGFVTMGLFTMTEQGVQGAMFQMISHGLVSGALFLCVGVVYDRMHTRDIAAYGG 365 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 LV MP YAVV M+FTMAN+GLPGTSGFIGEFL ++ F+ ++ + + A+ GV+LSA Y+ Sbjct: 366 LVARMPLYAVVFMIFTMANVGLPGTSGFIGEFLTLLGGFRVNSWIGLFATTGVILSAAYA 425 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 L+LYR+VVFGV ++ + DLS RE + P+ LT++FG +P P+ D+ + ++++I Sbjct: 426 LFLYRRVVFGVLDKPALRNILDLSPREAAIFAPLVALTLYFGFHPKPVLDSSAASVAALI 485 Query: 485 ENYTLKTGYSDSVK 498 +NY + + + Sbjct: 486 QNYDAAIARTRTAE 499 >gi|92117731|ref|YP_577460.1| NADH dehydrogenase subunit M [Nitrobacter hamburgensis X14] gi|91800625|gb|ABE63000.1| NADH dehydrogenase subunit M [Nitrobacter hamburgensis X14] Length = 502 Score = 541 bits (1395), Expect = e-152, Method: Compositional matrix adjust. Identities = 264/486 (54%), Positives = 353/486 (72%), Gaps = 3/486 (0%) Query: 4 PFLSIVTFLPFLGVFVILFSSY--LGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 P LS+VTFLP LG +I + R+ +AL + + F SL + + FD Sbjct: 5 PILSVVTFLPLLGALLIWLLARGSDDAADRTARWIALWTTVVTFAVSLILVARFDPADPG 64 Query: 62 FQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 FQ +E+ W+ YH+GVDGIS+ L++LTT L P CI++SW++I YMIAFLVL Sbjct: 65 FQFVEHASWLTTGIRYHMGVDGISLPLLILTTALMPVCIIASWRAISRRVPAYMIAFLVL 124 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 E++++G F +LD+LLFY+FFE LIPMF+IIG+WGG R+YA +KFFLYT GS+ ML A Sbjct: 125 ETLMVGTFSALDLLLFYVFFEGVLIPMFLIIGIWGGPRRVYATFKFFLYTLLGSVLMLLA 184 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 I+ + W T+ I L + P+++Q W W+AFF SFA+K+PM+P HTWLP+AHV+APT Sbjct: 185 IMALYWNAGTTDIPTLMR-TAVPYNLQMWAWLAFFASFAVKMPMWPVHTWLPDAHVEAPT 243 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LA I+LKMGGYG +RF LP+FPLAS FAP+IF LS IAIIY SLV+++Q D+KK Sbjct: 244 AGSVILAAILLKMGGYGFLRFSLPMFPLASHDFAPLIFVLSAIAIIYTSLVALMQDDMKK 303 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+AHMG+VT+GIF+G GV G +FQM+SHG+VS ALF CVG+IYDR+HTR+I A Sbjct: 304 LIAYSSVAHMGFVTMGIFAGTMQGVHGGVFQMISHGIVSGALFLCVGIIYDRMHTREIAA 363 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGGLV+ MP YA+V M FTMAN+GLPGTSGF+GEFL ++ F+ S A A+ G++LSA Sbjct: 364 YGGLVNRMPLYALVFMTFTMANVGLPGTSGFVGEFLSLIGTFKVSIPTAFAATTGIILSA 423 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LWLYRK+VFG + +KDL++RE + P+ VLT+ FG+YP P+ D + + Sbjct: 424 AYALWLYRKIVFGALVKPSLATIKDLTVRECLTLMPLFVLTILFGVYPKPVLDLSAASVQ 483 Query: 482 SIIENY 487 +++ NY Sbjct: 484 NLVNNY 489 >gi|170742523|ref|YP_001771178.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacterium sp. 4-46] gi|168196797|gb|ACA18744.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacterium sp. 4-46] Length = 506 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 250/457 (54%), Positives = 344/457 (75%), Gaps = 1/457 (0%) Query: 30 RRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLV 89 +R+ AL + F+ SL W +D ++FQ++E + W+ + LGVDG S+ L+ Sbjct: 32 QRNARWAALAATVATFLLSLVAWGRYDSSTAAFQLVESHAWLTESIRFKLGVDGFSMPLL 91 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 +LTTFL PFCI +SW +I +EY +AFLVLE+ +IG F +LD++LFY+FFEA LIPMF Sbjct: 92 LLTTFLMPFCIAASWHAIGHRVKEYFVAFLVLETTMIGVFCALDLVLFYLFFEAGLIPMF 151 Query: 150 VIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 +IIG+WGG RIYA++KFFLYT GS+ ML AI+ M W+ T+ I L +FP +Q Sbjct: 152 LIIGIWGGKRRIYASFKFFLYTLLGSVLMLLAILAMYWQAGTTDIPTLL-QHRFPTGLQT 210 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 W+W+AFF SFA+K+PM+P HTWLP+AHV+APTAGSV LAGI+LKMGGYG IR LP+FP Sbjct: 211 WLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGGYGFIRVSLPMFPD 270 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 AS FAP++F LS++AIIY SLV++VQTDIKKLIAYSS+AHMG+VT+G+F+ + G++GA Sbjct: 271 ASHLFAPLVFALSIVAIIYTSLVALVQTDIKKLIAYSSVAHMGFVTLGLFTMTEQGIQGA 330 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F M+SHG+VS ALF CVGVIYDR+HTR+I AYGGLV+ MP YAV MMVFTMAN+GLPGT Sbjct: 331 LFLMISHGIVSGALFLCVGVIYDRMHTREIAAYGGLVNRMPLYAVAMMVFTMANVGLPGT 390 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 SGF+GEFL ++ F+ + V+ + FG++LSA Y+LWL+ +V++G ++ + DL Sbjct: 391 SGFVGEFLSMLGAFRANPMVSFFSVFGIILSAAYALWLFARVIYGKLDKPSLRDIADLDR 450 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 RE ++ P+ VLT+++G +P PI DTF+ ++++ Sbjct: 451 REMAILAPLVVLTIYYGFHPSPILDTFAPSTEALMQG 487 >gi|220924017|ref|YP_002499319.1| proton-translocating NADH-quinone oxidoreductase subunit M [Methylobacterium nodulans ORS 2060] gi|219948624|gb|ACL59016.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacterium nodulans ORS 2060] Length = 506 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 249/457 (54%), Positives = 344/457 (75%), Gaps = 1/457 (0%) Query: 30 RRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLV 89 +R+ AL + F+ SL W +D ++FQ++E + W+ + LGVDG ++ L+ Sbjct: 32 QRNARWAALIATVATFLLSLVAWGRYDSSTAAFQLVESHAWLTESIRFKLGVDGFAMPLL 91 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 +LTTFL PFCI +SW SI +EY +AFLVLE+ +IG F +LD++LFY+FFEA LIPMF Sbjct: 92 LLTTFLMPFCIAASWHSIGVRVKEYFVAFLVLETTMIGVFCALDLVLFYLFFEAGLIPMF 151 Query: 150 VIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 +IIG+WGG RIYA++KFFLYT GS+ ML AI+ M W+ T+ I L +FP ++Q Sbjct: 152 LIIGIWGGKRRIYASFKFFLYTLLGSVLMLLAILAMYWQAGTTDIPTLL-QHRFPANLQT 210 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 W+W+AFF SFA+K+PM+P HTWLP+AHV+APTAGSV LA I+LKMGGYG IRF LP+FP Sbjct: 211 WLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAAILLKMGGYGFIRFSLPMFPD 270 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 AS FAP+IF LS++AIIY SLV++ QTDIKKLIAYSS+AHMG+VT+G+F+ + G++GA Sbjct: 271 ASHLFAPLIFALSIVAIIYTSLVALAQTDIKKLIAYSSVAHMGFVTLGLFTMTEQGIQGA 330 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F M+SHG+VS ALF CVGVIYDR+HTR+I AYGGLV+ MP YAV +MVFTMAN+GLPGT Sbjct: 331 LFLMISHGIVSGALFLCVGVIYDRMHTREIAAYGGLVNRMPLYAVALMVFTMANVGLPGT 390 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 SGF+GEFL ++ F+ + V+ + FG++LSA Y+LWLY +V++G + +Q + DL Sbjct: 391 SGFVGEFLSMVGAFRTNPMVSFFSVFGIILSAAYALWLYARVIYGKLEKPSLQAITDLDR 450 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 RE ++ P+ VLT+++G +P P+ D F+ ++++ Sbjct: 451 REIAILAPLVVLTIYYGFHPSPVLDVFAPSTEALMQG 487 >gi|83592902|ref|YP_426654.1| NADH dehydrogenase subunit M [Rhodospirillum rubrum ATCC 11170] gi|83575816|gb|ABC22367.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Rhodospirillum rubrum ATCC 11170] Length = 510 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 267/490 (54%), Positives = 356/490 (72%), Gaps = 4/490 (0%) Query: 1 MN-LPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MN LP LSI+TFLP +G VF++ R+ VAL + F+ SL +W FD Sbjct: 1 MNALPLLSIITFLPLVGAVFILTVKGEEAVVARNARNVALLTTGFTFLVSLGLWFGFDPA 60 Query: 59 RSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 +S FQ +E W+ DY +Y +GVDGIS+L V+L+TFLTP CIL+SW SI + +EYM+A Sbjct: 61 QSGFQFVEKVSWLPDYGINYQMGVDGISVLFVLLSTFLTPLCILASWTSITKRVKEYMVA 120 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FLVLE+M++G F +LD ++FY+FFE LIPMF+IIG+WGG R+YA++KFFLYT GS+ Sbjct: 121 FLVLETMMVGMFCALDFVVFYVFFEGVLIPMFLIIGIWGGGRRVYASFKFFLYTLAGSVL 180 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 M+ A++ M E T+ I L + FP ++Q W+W+A F SFA+K+PM+P HTWLP+AHV Sbjct: 181 MMVAMLAMYIEAGTTDIPTLMS-HGFPAAMQTWLWLAMFASFAVKVPMWPVHTWLPDAHV 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAG++LKMG YG +RF +P+ PLAS FAP IF LS+I +IY SLV++VQ Sbjct: 240 EAPTAGSVILAGVLLKMGAYGFLRFSIPMLPLASADFAPFIFALSVIGVIYTSLVALVQE 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KKLIAYSSIAHM +VT GIF+ + VEGA++QMLSHG+VS ALF CVGV+YDRLHTR Sbjct: 300 DMKKLIAYSSIAHMAFVTAGIFAVNQMSVEGALYQMLSHGVVSGALFLCVGVVYDRLHTR 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I YGGL NMPRYA+V MVF MA++GLPGT GFIGEFL++M VFQ S VA+ + GV Sbjct: 360 EISRYGGLAKNMPRYALVFMVFMMASIGLPGTGGFIGEFLIMMGVFQISTWVALFIATGV 419 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +L A Y L+LYR+V+FG + E ++ L DL+ RE + P+ VL ++ G+YP D Sbjct: 420 ILGAAYMLYLYRRVIFGKLEKEDLKGLLDLNRREVAIFAPLLVLVLWMGVYPSTFLDFMH 479 Query: 478 VPLSSIIENY 487 ++ ++ Y Sbjct: 480 TSVADLVSTY 489 >gi|84502628|ref|ZP_01000747.1| NADH dehydrogenase subunit M [Oceanicola batsensis HTCC2597] gi|84389023|gb|EAQ01821.1| NADH dehydrogenase subunit M [Oceanicola batsensis HTCC2597] Length = 518 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 262/507 (51%), Positives = 359/507 (70%), Gaps = 15/507 (2%) Query: 5 FLSIVTFLPFLGVFV--ILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LSI TFLP + + I G+R+ VAL + + FI SLF+ FD + F Sbjct: 4 LLSITTFLPAIAALILAIFLRGEDEAGQRNAKWVALIATVLTFIVSLFILVGFDPSDTGF 63 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E W+ Y +GVDGIS+L V+LTTF+ P I +SW ++ +EYMIAFL+LE Sbjct: 64 QFVEEREWL-MGLKYKMGVDGISVLFVLLTTFMMPLTIAASW-NVTSRVKEYMIAFLLLE 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++++G F++LD++LFY+FFEA LIPMF+IIG+WGG RIYA++KFFLYTF GS+ ML A+ Sbjct: 122 TLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKNRIYASFKFFLYTFLGSVLMLVAM 181 Query: 183 VVMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTW 231 V M + T+ I L + FS+ Q +W+AFF SFA+K+PM+P HTW Sbjct: 182 VAMVADAGTTDIPALLTHEFGSETFSVLGIQIVGGMQTLLWLAFFASFAVKMPMWPVHTW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S AP++F++S IAI+Y SL Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPIGSDLLAPLVFWMSAIAIVYTSL 301 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V+MVQ D+KKLIAYSS+AHMGYVT+GIF+ + G++GA+FQMLSHG +S ALF CVGVIY Sbjct: 302 VAMVQEDMKKLIAYSSVAHMGYVTMGIFTANQQGIDGAIFQMLSHGFISGALFLCVGVIY 361 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTRDI AYGGLV+ MP YA++ M+FTMAN+GLPGTSGFIGEFL +M +FQ + VA+ Sbjct: 362 DRMHTRDIDAYGGLVNKMPAYALIFMLFTMANVGLPGTSGFIGEFLTLMGIFQVNTWVAL 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A+ GV+LSA Y+LWLYR+VV G E ++ + D++ RE+ + P+ +T+ G+YP Sbjct: 422 VATSGVILSAAYALWLYRRVVMGDLIKESLRSITDMTAREKWIFAPLVAMTLLLGVYPSL 481 Query: 472 IRDTFSVPLSSIIENYTLKTGYSDSVK 498 + D + ++IE++ +D + Sbjct: 482 VTDVIGPSVEALIEDHNTALAAADRLD 508 >gi|83311874|ref|YP_422138.1| NADH dehydrogenase subunit M [Magnetospirillum magneticum AMB-1] gi|82946715|dbj|BAE51579.1| NADH:ubiquinone oxidoreductase subunit 4 [Magnetospirillum magneticum AMB-1] Length = 504 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 266/499 (53%), Positives = 358/499 (71%), Gaps = 3/499 (0%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS+ TFLP G +F++ R+ VAL S F+ SLF+ + F+ Sbjct: 3 DWPLLSLTTFLPLAGALFILTIRGETEVVARNSRNVALLTSIATFVVSLFILAKFNGASP 62 Query: 61 SFQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ+ E W +Y +GVDGIS+ V+L+TFLTP CIL+++ S+++ +EYM+AF+ Sbjct: 63 DFQLKETALWFPGTTIAYSMGVDGISMWFVLLSTFLTPICILAAFGSVEKRVKEYMVAFM 122 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE+M+IG F +LD++LFYIFFEA LIPMF+IIGVWGG R+YAA+KFFLYT GS+ ML Sbjct: 123 ILETMMIGMFCALDLVLFYIFFEAVLIPMFIIIGVWGGQRRVYAAFKFFLYTLLGSVLML 182 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ M ++ T+ I L A S FPF +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 183 IAMLAMYFDAHTTDIPSLMAHS-FPFKMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT GSV LAG++LKMG YG IRF +P+ P AS YF P+I+ LS++A+IY SLV++VQ D+ Sbjct: 242 PTGGSVILAGVLLKMGAYGFIRFSIPMLPDASVYFTPLIYTLSIVAVIYTSLVALVQDDM 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMGYVTIGIFS GVEGA+FQMLSHG+V+SALF CVGVIYDR+HTR+I Sbjct: 302 KKLIAYSSVAHMGYVTIGIFSMTTQGVEGAVFQMLSHGIVASALFLCVGVIYDRMHTREI 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGGL MP YAVV M+FTMA++GLPGT+GF+GEFLV+M VFQ + VA A+ G+VL Sbjct: 362 ARYGGLATRMPIYAVVFMLFTMASVGLPGTAGFVGEFLVLMGVFQVNTWVAFFAATGLVL 421 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 Y L+LYR+VVFG E ++ + D++ RE + P+ VLT++ G+ P + Sbjct: 422 GCTYMLYLYRRVVFGRLTREDLKGILDMTPREIAVFAPLIVLTIWMGVAPGTFLEPMHAS 481 Query: 480 LSSIIENYTLKTGYSDSVK 498 ++ +I NY L D + Sbjct: 482 VTKLISNYELARAAHDGLS 500 >gi|296444806|ref|ZP_06886769.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylosinus trichosporium OB3b] gi|296257754|gb|EFH04818.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylosinus trichosporium OB3b] Length = 503 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 263/494 (53%), Positives = 360/494 (72%), Gaps = 5/494 (1%) Query: 6 LSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 L+ +TFLP +G F++ R+ AL + I F SL VW FD ++FQ+ Sbjct: 7 LTGLTFLPLVGAAFILTLKGEDEATLRNAKWAALLTTVIVFALSLVVWGRFDTASAAFQL 66 Query: 65 IEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 +E W +Y +GVDG SI V+LTTFLTPF IL+SW+S++ +EY++AFLVLE++ Sbjct: 67 VEQRAWFGSGLTYKMGVDGFSIPFVLLTTFLTPFAILASWESVKFRVKEYLVAFLVLETL 126 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 +IG F +LD++LFY+FFE LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML AI+ Sbjct: 127 MIGVFCALDLVLFYLFFEGGLIPMFLIIGVWGGKRRVYASFKFFLYTLAGSLLMLIAILA 186 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + + T+ I L ++FP +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+APTAGS Sbjct: 187 IYGKTGTTDIAVLLE-TQFPPEMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPTAGS 245 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 V LA I+LKMGGYG IRF LP+FP AS FAP++F LS+IA+IY SLV++VQ DIKKLIA Sbjct: 246 VILAAILLKMGGYGFIRFSLPMFPDASAQFAPLVFALSVIAVIYTSLVALVQEDIKKLIA 305 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSSIAHMG+VT+G+F+ G++GAMF M+SHG VS ALF CVGVIYDR+HTR+I AYGG Sbjct: 306 YSSIAHMGFVTMGLFTMTTQGLQGAMFLMISHGFVSGALFLCVGVIYDRMHTREIAAYGG 365 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 LV+ MP YA MVFT+AN+GLPGTSGF+GEFL + F ++ VA+ A+ GVVLSA Y+ Sbjct: 366 LVNRMPLYAFTFMVFTLANVGLPGTSGFVGEFLTLTGAFVANSWVALFATSGVVLSAAYA 425 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 L+LYR+V+FG + + DLS RE + P+ LT+++G+ P PI D + +++++ Sbjct: 426 LYLYRRVIFGPLDKPSLAAITDLSARELVLFVPLIALTIYYGVQPQPIIDASAASVANLL 485 Query: 485 ENYTLKTGYSDSVK 498 +++ T +D++K Sbjct: 486 QSH---TALADALK 496 >gi|83858402|ref|ZP_00951924.1| NADH dehydrogenase subunit M [Oceanicaulis alexandrii HTCC2633] gi|83853225|gb|EAP91077.1| NADH dehydrogenase subunit M [Oceanicaulis alexandrii HTCC2633] Length = 515 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 273/493 (55%), Positives = 350/493 (70%), Gaps = 9/493 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILF------SSYLGCGRRSFFGVALGISTINFIFSLFVWSVF 55 LP LS +TFLP LG IL S R+ G+AL ++ F SL + F Sbjct: 4 QLPILSAITFLPALGAVAILLLRALMRSEERAVLDRNAKGIALFVTLFVFALSLLMLVEF 63 Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 D G++ FQ +E W+ SY +GVDGIS+L VVLT FL P CILSSWK + + +Y Sbjct: 64 DAGQAGFQFVESLPWLPALGISYKMGVDGISVLFVVLTAFLLPICILSSWK-LDKRVADY 122 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M AFL+LE++VIG F +LDM LFYIFFE SLIPMF+IIGVWGG RIYAA+KFFLYTF G Sbjct: 123 MAAFLLLETLVIGVFCALDMFLFYIFFEGSLIPMFLIIGVWGGQNRIYAAFKFFLYTFLG 182 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 S+ ML A++VM + T+ I L A F +Q W+W+AFF SFA+K+PM+P HTWLP+ Sbjct: 183 SVLMLAAMIVMFTQVGTTDIEVLLA-HPFARDLQTWLWLAFFASFAVKMPMWPVHTWLPD 241 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHVQAPTAGSV LAGI+LK+GGYG +RF +P+FP AS++FAP++F LS+IAI+ SL++ Sbjct: 242 AHVQAPTAGSVILAGILLKLGGYGFLRFSIPMFPNASEFFAPMVFILSIIAIVVTSLIAF 301 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTDIKKLIAYSS+AHMG+VT+GIF+ + GV+GA+FQMLSHG++S+ALF C+GVIYDR Sbjct: 302 RQTDIKKLIAYSSVAHMGFVTLGIFTMTELGVQGAIFQMLSHGVISAALFLCIGVIYDRF 361 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 HTR+I YGGLVH MP YA V +F MAN+GLPGTSGFIGE + + FQ VA A+ Sbjct: 362 HTREISFYGGLVHKMPVYAAVFGLFAMANVGLPGTSGFIGEIMTMTGAFQVDPRVAAGAA 421 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 GV+ SA+Y L Y+KVVFGV K++ DL+ RE + +AVL V+FG + PI D Sbjct: 422 LGVIFSAVYMLVAYKKVVFGVVTNPKLEAATDLNAREWINLGVLAVLAVYFGFFSTPITD 481 Query: 475 TFSVPLSSIIENY 487 T + +I++Y Sbjct: 482 TTRASVDQLIQHY 494 >gi|170748465|ref|YP_001754725.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacterium radiotolerans JCM 2831] gi|170654987|gb|ACB24042.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacterium radiotolerans JCM 2831] Length = 506 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 254/460 (55%), Positives = 350/460 (76%), Gaps = 3/460 (0%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLT 96 AL + + F+ SL WS +D SSFQ++E + W+ + LGVDG S+ L++LTTFL Sbjct: 39 ALATTVVTFLLSLVAWSRYDAASSSFQLVESHAWLTETIRFKLGVDGFSMPLILLTTFLM 98 Query: 97 PFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG 156 PFCI +SW SI +EY +AFLVLE+ +IG F SLD+LLFY+FFEA LIPMF+IIG+WG Sbjct: 99 PFCIGASWHSIHFRVKEYFVAFLVLETTMIGVFASLDLLLFYLFFEAGLIPMFLIIGIWG 158 Query: 157 GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFF 216 G RIYA++KFFLYT GS+ ML A++ M W+ T+ I L +FP +Q W+W+AFF Sbjct: 159 GQRRIYASFKFFLYTLLGSVLMLLAVMAMYWQAGTTDIPTLL-QYRFPVQMQTWLWLAFF 217 Query: 217 CSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAP 276 SFA+K+PM+P HTWLP+AHV+APTAGSV LAGI+LKMGGYG IR LP+ P+ASQ FAP Sbjct: 218 ASFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGGYGFIRISLPMLPVASQEFAP 277 Query: 277 VIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSH 336 +F LS+IAII+ SL +M+QTDIKKLIAYSS+AHMG+VT+G+F+ + G++GA+F M+SH Sbjct: 278 FVFALSVIAIIFTSLTAMMQTDIKKLIAYSSVAHMGFVTLGLFTLNEQGIQGALFLMISH 337 Query: 337 GLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEF 396 G+VS ALF CVGV+YDR+HTR+I AYGGLV MP YAV M++FTMAN+GLPGTSGF+GEF Sbjct: 338 GIVSGALFLCVGVVYDRMHTREIAAYGGLVKRMPLYAVAMLIFTMANVGLPGTSGFVGEF 397 Query: 397 LVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 L ++ F+ + VA ++FG++LSA Y+LWLY +V++G + +Q + DL RE+ ++ Sbjct: 398 LAMLGAFKANPNVAFFSTFGIILSAAYALWLYARVIYGKLEKPNLQGILDLDTREKIILA 457 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDS 496 P+ VLT+++G++P P+ D F+ +++ + +KT S++ Sbjct: 458 PLVVLTIYYGVHPAPVLDVFAPSTDALMAS--IKTALSNT 495 >gi|255263730|ref|ZP_05343072.1| NADH-quinone oxidoreductase subunit m [Thalassiobium sp. R2A62] gi|255106065|gb|EET48739.1| NADH-quinone oxidoreductase subunit m [Thalassiobium sp. R2A62] Length = 513 Score = 528 bits (1360), Expect = e-148, Method: Compositional matrix adjust. Identities = 263/504 (52%), Positives = 357/504 (70%), Gaps = 17/504 (3%) Query: 5 FLSIVTFLPFL--GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LSIVTF+P L G+ + +R+ VAL + F+ SL + FD + F Sbjct: 4 LLSIVTFIPLLAAGILALFLRGDDEAAQRNAKWVALAATATTFLVSLAILGQFDPSDTGF 63 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 QM+E W+ Y +GVDGIS+L V+LTTFL P I S W ++ +EYMIAFL+LE Sbjct: 64 QMVEQRDWL-LGMQYKMGVDGISVLFVMLTTFLMPLVIASCWD-VKHRVKEYMIAFLILE 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++++G F +LD++LFY+FFEA LIPMF+IIG+WGG+ RIYA++KFFLYTF GS+ ML A+ Sbjct: 122 TLMLGVFCALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLMLVAM 181 Query: 183 VVMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTW 231 V M + T+ I+ L + F++ Q MWIAFF SFA+K+PM+P HTW Sbjct: 182 VSMFADAGTTDIVTLLNHNFGSETFNVLGVQVIGGMQTMMWIAFFASFAVKMPMWPVHTW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+AS AP++ ++S IAI Y SL Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVASDLLAPLVLWMSAIAIAYTSL 301 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++VQ D+KKLIAYSS+AHMGYVT+GIF+ + G++GA+FQM+SHG +S ALF CVGVIY Sbjct: 302 VALVQQDMKKLIAYSSVAHMGYVTMGIFAANQQGIDGAIFQMISHGFISGALFLCVGVIY 361 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTR+I AYGGLV+ MP YA++ M FTMAN+GLPGTSGF+GEFL +M VFQ + VAV Sbjct: 362 DRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLMGVFQVNTWVAV 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A+ GV+LSA Y LWLYR+VV G E ++ + D++ RER + P+ V+T+ G+YP Sbjct: 422 IATSGVILSASYGLWLYRRVVMGDLIKESLKSITDMTRRERAIFAPLVVMTLLLGVYPAL 481 Query: 472 IRDTFSVPLSSIIENYTLKTGYSD 495 + D + +++ +Y +T +D Sbjct: 482 VTDIIGPSVEALVGSY--ETAVAD 503 >gi|90423917|ref|YP_532287.1| NADH dehydrogenase subunit M [Rhodopseudomonas palustris BisB18] gi|90105931|gb|ABD87968.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris BisB18] Length = 506 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 268/488 (54%), Positives = 354/488 (72%), Gaps = 2/488 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 M P LS+VTFLP +G ++ + +R+ +AL + I F SL + + FD Sbjct: 6 MTWPILSVVTFLPLVGALLLLVIRGSDPAAQRNARWIALWTTLITFAVSLILVARFDSSV 65 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + FQ +E W+ YH+GVDGIS+ V+LTT L PFCI++SWKSI EYM+AFL Sbjct: 66 ADFQFVEKAPWLAAGIGYHMGVDGISLPFVILTTALMPFCIIASWKSITRRVGEYMMAFL 125 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VLE+++IG F +LD++LFY+FFE LIPMF+IIGVWGG R+YA++KFFLYT GS+ ML Sbjct: 126 VLETLMIGTFSALDLVLFYLFFEGGLIPMFLIIGVWGGPRRVYASFKFFLYTLLGSVLML 185 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI+ + T+ I L + P S+Q W W+AFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 186 LAIMALYLNAGTTDIPTLM-HTAVPRSLQTWAWLAFFASFAVKMPMWPVHTWLPDAHVEA 244 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LA IMLKMGGYG +RF LP+FP AS FAP+IF LS+IAI+Y SLV+++Q DI Sbjct: 245 PTAGSVVLAAIMLKMGGYGFLRFSLPMFPDASHDFAPLIFALSVIAIVYTSLVALMQEDI 304 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMG+VT+GIF+G GV G +FQM+SHG+VS ALF CVG++YDR+HTR+I Sbjct: 305 KKLIAYSSVAHMGFVTMGIFAGTTQGVAGGVFQMVSHGIVSGALFLCVGIVYDRMHTREI 364 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGGLV+ MP YAVV MVFTMAN+GLPGTSGF+GEFL ++ F+ + A +A+ GV+L Sbjct: 365 SAYGGLVNRMPIYAVVFMVFTMANVGLPGTSGFVGEFLTLLGTFKVNIPTATVATLGVIL 424 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LWLYRKVVFG + +KDL+ RE + P+ +LT+ FG+YP P+ D + Sbjct: 425 SAAYALWLYRKVVFGALVKPSLASIKDLTWRESLTLVPLLILTLLFGVYPKPVLDMSAAS 484 Query: 480 LSSIIENY 487 + ++ Y Sbjct: 485 VQHLVTTY 492 >gi|159043877|ref|YP_001532671.1| NADH dehydrogenase subunit M [Dinoroseobacter shibae DFL 12] gi|157911637|gb|ABV93070.1| proton-translocating NADH-quinone oxidoreductase [Dinoroseobacter shibae DFL 12] Length = 515 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 264/499 (52%), Positives = 359/499 (71%), Gaps = 15/499 (3%) Query: 5 FLSIVTFLPFLGVFVI--LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LSI+TF+P + ++ RR+ +AL +++ FI SLF+ + FD + F Sbjct: 4 LLSIITFIPAVAALILALFLRGDDEAARRNAKWLALIATSVTFILSLFLLAGFDPQDTGF 63 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E W+ +Y +GVDGISIL V+LTTFL P I S W +++ +EYMIAFLVLE Sbjct: 64 QFVEERPWV-LGLTYKMGVDGISILFVMLTTFLMPITIASCW-TVETRVKEYMIAFLVLE 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +++IG F +LD++LFY+FFEA LIPMF+IIG+WGG+ RIYA++KFFLYTF GS+ ML A+ Sbjct: 122 TLMIGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLMLVAM 181 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSI-----------QYWMWIAFFCSFAIKIPMFPFHTW 231 V M + T+ I L +I Q +W+AFF SFA+K+PM+P HTW Sbjct: 182 VAMYVDAGTTDIPTLLTHQFGTTTIEVLGIHILGGMQVLLWLAFFASFAVKMPMWPVHTW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+AS AP++ +LS IAI+Y SL Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVASDIMAPLVLWLSAIAIVYTSL 301 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++VQTD+KKLIAYSS+AHMG+VT+GIF+ + GV+GA+FQM+SHG +S ALF CVGVIY Sbjct: 302 VALVQTDMKKLIAYSSVAHMGFVTMGIFAANQQGVDGAIFQMISHGFISGALFLCVGVIY 361 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTR+I AYGGLV+ MP YA+V M+FTMAN+GLPGTSGF+GEFL ++ VFQ + VA Sbjct: 362 DRMHTREIDAYGGLVNRMPAYALVFMLFTMANVGLPGTSGFVGEFLTLVGVFQVNTWVAF 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A+ GV+LSA Y+LWLYR+VVFG E ++ + D++LRER + P+ V+T+ G+YP Sbjct: 422 VAATGVILSAGYALWLYRRVVFGDLIKESLKTINDMTLRERAIFAPLIVMTLLLGVYPSL 481 Query: 472 IRDTFSVPLSSIIENYTLK 490 + D + ++ YT + Sbjct: 482 VTDIIGPSVEGMLTQYTAQ 500 >gi|126736046|ref|ZP_01751790.1| NADH-quinone oxidoreductase chain M [Roseobacter sp. CCS2] gi|126714603|gb|EBA11470.1| NADH-quinone oxidoreductase chain M [Roseobacter sp. CCS2] Length = 513 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 262/495 (52%), Positives = 354/495 (71%), Gaps = 15/495 (3%) Query: 6 LSIVTFLPFLG--VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS+ TFLP LG + + +R+ VAL + + FI SLF+ + F+ + FQ Sbjct: 5 LSLTTFLPLLGAVILALFLRGDDEAAQRNAKWVALVTTAVTFICSLFILANFNPADTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 M+E W+ Y +GVDGISIL V+LTTFL P I S W ++ +EYMIAFL+LE+ Sbjct: 65 MVETREWL-LGLQYKMGVDGISILFVMLTTFLMPLVIASCWD-VKARVKEYMIAFLILET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G FL+LD++LFY+FFEA LIPMF+IIG+WGG RIYA++KFFLYTF GS+ ML A+V Sbjct: 123 LMLGVFLALDLVLFYLFFEAGLIPMFLIIGIWGGKNRIYASFKFFLYTFLGSVLMLVAMV 182 Query: 184 VMCWEKKTSSIIDLYAMS--KFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTWL 232 M T+ I L A + FSI Q +W+AFF SFA+K+PM+P HTWL Sbjct: 183 AMFSAAGTTDIPTLMAFTFETENFSILGVQIIGGMQTLLWLAFFASFAVKMPMWPVHTWL 242 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S+ P++ LS IAI+Y SLV Sbjct: 243 PDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMGPLVLTLSAIAIVYTSLV 302 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++VQ D+KKLIAYSS+AHMGYVT+GIF+ + G++GA+FQM+SHG +S ALF CVGVIYD Sbjct: 303 ALVQDDMKKLIAYSSVAHMGYVTMGIFAVNQQGIDGAIFQMISHGFISGALFLCVGVIYD 362 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+HTR+I AYGGLV+ MP YA++ M FTMAN+GLPGTSGF+GEFLV+M +FQ + +A+ Sbjct: 363 RMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLVLMGIFQVNTWIALF 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+LSA Y+LWLYR+VVFG E ++ + D+ RER + P+ +T+ G+YP + Sbjct: 423 ATSGVILSAAYALWLYRRVVFGDLIKESLKTITDMGTRERVIFAPLVAMTLLLGVYPALV 482 Query: 473 RDTFSVPLSSIIENY 487 D +++++ NY Sbjct: 483 LDIIGPSVNALVGNY 497 >gi|126461958|ref|YP_001043072.1| NADH dehydrogenase subunit M [Rhodobacter sphaeroides ATCC 17029] gi|126103622|gb|ABN76300.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodobacter sphaeroides ATCC 17029] Length = 513 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 258/500 (51%), Positives = 361/500 (72%), Gaps = 15/500 (3%) Query: 6 LSIVTFLPFLGVFV--ILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSI+TF+P + + + +R+ +AL ++ F+ SLF+ + FD + FQ Sbjct: 5 LSIITFIPLVAALIMALFLRGDDAAAQRNAKWLALLATSATFLVSLFLLAGFDAQDTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E Y WI Y +GVDGISIL V+LTTFL PF I S+W+ ++ +EYMIAFL+LE+ Sbjct: 65 FVESYDWIAGL-QYKMGVDGISILFVMLTTFLMPFTIASAWE-VETRVKEYMIAFLILET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F +LD++LFY+FFEA LIPMF+IIG+WGG +RIYAA+KFFLYTF GS+ ML A++ Sbjct: 123 LMLGVFCALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYAAFKFFLYTFLGSVLMLIAMI 182 Query: 184 VMCWEKKTSSIIDLYA-------MSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTWL 232 M ++ T+ I L + M+ F I Q +++AFF SFA+K+PM+P HTWL Sbjct: 183 AMYYDAGTTDIPTLLSHEFSSGTMTLAGFQIVGGLQTLLFLAFFASFAVKMPMWPVHTWL 242 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S+ +P++F++S IAI+Y SLV Sbjct: 243 PDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPIGSELLSPLVFWMSAIAIVYTSLV 302 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q+D+KKLIAYSS+AHMGYVT+GIF+ + GV+GA+FQMLSHG +S ALF CVGVIYD Sbjct: 303 ALAQSDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMLSHGFISGALFLCVGVIYD 362 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+HTR+I AYGGLV+ MP YA++ M FTMAN+GLPGTSGFIGEFL ++ +FQ + VA++ Sbjct: 363 RMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFIGEFLTLVGIFQVNTWVAMV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+LSA Y LWLYR+VVFG E ++ ++D+ RE+ + P+ +T+ G+YP + Sbjct: 423 ATSGVILSAAYGLWLYRRVVFGELVKEALRTIRDMDRREKAIFAPLVAMTLLLGVYPSLV 482 Query: 473 RDTFSVPLSSIIENYTLKTG 492 D ++ + +Y T Sbjct: 483 TDIIGPSVARLTTDYQSATA 502 >gi|91761985|ref|ZP_01263950.1| NADH dehydrogenase subunit M [Candidatus Pelagibacter ubique HTCC1002] gi|91717787|gb|EAS84437.1| NADH dehydrogenase subunit M [Candidatus Pelagibacter ubique HTCC1002] Length = 497 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/488 (51%), Positives = 356/488 (72%), Gaps = 3/488 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 MN P LS + LP +G +LFS + VAL S +NF+ SL++W FD S Sbjct: 1 MNFPILSSLILLPVVGSLFLLFSKDKNSNTGKY--VALFTSFVNFLISLYLWYQFDPTTS 58 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ +E W+ +Y +G+DGISIL +VLT +TP CI+S ++++ R+++IA LV Sbjct: 59 DFQFVEDREWLKGIINYKIGIDGISILFIVLTALITPLCIISVNNTVKDRLRDFLIAILV 118 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +ES++IG F SLD+++FY+FFEA LIPMF+IIG+WGG+ R+Y+A+KFFLYT GS+ ML Sbjct: 119 MESLMIGVFCSLDLVIFYLFFEAGLIPMFLIIGIWGGARRVYSAFKFFLYTLLGSVLMLI 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ + W T+ I LY + Q +W+AFF SFA+K PM+P HTWLP+AHV+AP Sbjct: 179 AIISIYWISGTTDITQLYELG-IDTKYQNLLWLAFFSSFAVKTPMWPVHTWLPDAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I+LKM GYG IRF L LFP+AS F P+++ LSLIAI+Y SLV+++Q D+K Sbjct: 238 TAGSVLLAAILLKMAGYGFIRFSLGLFPVASDLFTPLVYALSLIAIVYTSLVALMQEDMK 297 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMG+VT+GIF+ + G+EG++ QM+SHGLVS+ALF CVGV+YDR+H+R I Sbjct: 298 KLIAYSSVAHMGFVTLGIFTITQQGIEGSIVQMISHGLVSAALFLCVGVVYDRMHSRLIA 357 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGGLV MP+Y+++ M+FT+A +GLPGTSGFIGEFL++M F+++ VAV+AS GV+ Sbjct: 358 TYGGLVSVMPKYSILFMLFTLAALGLPGTSGFIGEFLILMGAFKDNFLVAVIASLGVIFG 417 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y LWLYR+VVFG K +++ ++ DL+ E+ +++ +A+ +FFG YP P+ +T + + Sbjct: 418 AAYMLWLYRRVVFGEIKNKELLKMPDLNNSEKFILWCLAIPVLFFGFYPEPLINTIEISV 477 Query: 481 SSIIENYT 488 +IE Y Sbjct: 478 KDLIEMYN 485 >gi|71083594|ref|YP_266313.1| NADH dehydrogenase subunit M [Candidatus Pelagibacter ubique HTCC1062] gi|71062707|gb|AAZ21710.1| NADH Dehydrogenase I Chain M [Candidatus Pelagibacter ubique HTCC1062] Length = 497 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/488 (51%), Positives = 356/488 (72%), Gaps = 3/488 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 MN P LS + LP +G +LFS + VAL S +NF+ SL++W FD S Sbjct: 1 MNFPILSSLILLPVVGSLFLLFSKDKNSNTGKY--VALFTSFVNFLISLYLWYQFDPTTS 58 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ +E W+ +Y +G+DGISIL +VLT +TP CI+S ++++ R+++IA LV Sbjct: 59 DFQFVEDREWLKGIINYKIGIDGISILFIVLTALITPLCIISVNNTVKDRLRDFLIAILV 118 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +ES++IG F SLD+++FY+FFEA LIPMF+IIG+WGG+ R+Y+A+KFFLYT GS+ ML Sbjct: 119 MESLMIGVFCSLDLVIFYLFFEAGLIPMFLIIGIWGGARRVYSAFKFFLYTLLGSVLMLI 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ + W T+ I LY + Q +W+AFF SFA+K PM+P HTWLP+AHV+AP Sbjct: 179 AIISIYWISGTTDITQLYELG-IDTKYQNLLWLAFFSSFAVKTPMWPVHTWLPDAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I+LKM GYG IRF L LFP+AS F P+++ LSLIAI+Y SLV+++Q D+K Sbjct: 238 TAGSVLLAAILLKMAGYGFIRFSLGLFPVASDLFTPLVYALSLIAIVYTSLVALMQEDMK 297 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMG+VT+GIF+ + G+EG++ QM+SHGLVS+ALF CVGV+YDR+H+R I Sbjct: 298 KLIAYSSVAHMGFVTLGIFTITQQGIEGSIVQMISHGLVSAALFLCVGVVYDRMHSRLIA 357 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGGLV MP+Y+++ M+FT+A +GLPGTSGFIGEFL++M F+++ VAV+AS GV+ Sbjct: 358 TYGGLVSVMPKYSILFMLFTLAALGLPGTSGFIGEFLILMGAFKDNFLVAVIASLGVIFG 417 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y LWLYR+VVFG K +++ ++ DL+ E+ +++ +A+ +FFG YP P+ +T + + Sbjct: 418 AAYMLWLYRRVVFGEIKNKELLKMPDLNNSEKFILWCLAIPVLFFGFYPEPLINTIEISV 477 Query: 481 SSIIENYT 488 +IE Y Sbjct: 478 KDLIEMYN 485 >gi|85703189|ref|ZP_01034293.1| NADH dehydrogenase subunit M [Roseovarius sp. 217] gi|85672117|gb|EAQ26974.1| NADH dehydrogenase subunit M [Roseovarius sp. 217] Length = 525 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 259/495 (52%), Positives = 356/495 (71%), Gaps = 15/495 (3%) Query: 5 FLSIVTFLPFLG--VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LSIVTF+P + + + +R+ VAL +T+ F+ SLF+ FD + F Sbjct: 14 LLSIVTFIPAVAAAILAVFLRGQDAAAQRNAKWVALIATTLTFVVSLFILFQFDPSNTGF 73 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 QM+E W+ Y +GVDGIS+L V+LTTF+ P I +SW ++ +EYMIAFL+LE Sbjct: 74 QMVEEREWL-LGLQYKMGVDGISVLFVMLTTFIMPLTIAASW-TVTTRVKEYMIAFLLLE 131 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++++G F++LD++LFY+FFEA LIPMF+IIG+WGG ERIYA++KFFLYTF GS+ ML A+ Sbjct: 132 TLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGRERIYASFKFFLYTFLGSVLMLVAM 191 Query: 183 VVMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTW 231 V M + T+ I DL + FSI Q M++AFF SFA+K+PM+P HTW Sbjct: 192 VAMFSDAGTTDIADLLKHEFESETFSILGVHVIGGMQTLMFLAFFASFAVKMPMWPVHTW 251 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ ++ P++ ++S IAI+Y SL Sbjct: 252 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGTEVLTPLVLWMSAIAIVYTSL 311 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++ Q D+KKLIAYSS+AHMGYVT+GIF+ + GV+GA+FQM+SHG +S ALF CVGVIY Sbjct: 312 VALAQEDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMISHGFISGALFLCVGVIY 371 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTR+I AYGGLV+ MP YA++ M FTMAN+GLPGTSGF+GEFL ++ VFQ + VA Sbjct: 372 DRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLVGVFQVNTWVAA 431 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A+ GV+LSA Y+LWLYR+VVFG E ++ + D++ RER + P+ V+T+ G+YP Sbjct: 432 VATSGVILSAAYALWLYRRVVFGDLIKESLRTITDMNKRERAIFAPLVVMTLLLGVYPRL 491 Query: 472 IRDTFSVPLSSIIEN 486 + D + ++I N Sbjct: 492 VTDITGPSVEALISN 506 >gi|294083723|ref|YP_003550480.1| proton-translocating NADH-quinone oxidoreductase subunit M [Candidatus Puniceispirillum marinum IMCC1322] gi|292663295|gb|ADE38396.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Candidatus Puniceispirillum marinum IMCC1322] Length = 501 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 265/494 (53%), Positives = 360/494 (72%), Gaps = 9/494 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILF----SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 N P L+I+TFLP GV +L + RS V L I+ NFI SL + FD Sbjct: 4 NWPLLTIITFLPLAGVIFLLMIRGDDEIVANNARS---VTLWITGFNFIVSLSLLLGFDS 60 Query: 58 GRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 + +Q E+ W+ + +YH+GVDGIS+ V+L+TFLTP +L+SW++I REYMI Sbjct: 61 NVAGYQFEEFAEWLPNTGINYHMGVDGISMPFVLLSTFLTPLAVLASWRAISHRVREYMI 120 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 AFLVLE+M+IG F+SLDML+FY+FFEA LIPMF+IIG+WGG+ R+YAA+KFFL+T GS+ Sbjct: 121 AFLVLETMMIGMFVSLDMLMFYLFFEAVLIPMFLIIGIWGGARRVYAAFKFFLFTLLGSV 180 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML ++ M + T+ I L A S F +Q+W+++ FF SFA+K+PM+P HTWLP+AH Sbjct: 181 LMLVCMLAMYVQTGTTDIPMLTAHS-FGTGMQFWLFLGFFASFAVKVPMWPVHTWLPDAH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APTAGS+ LAG++LKMGGYG +RF LP+FP AS+ FAPVIF LS+IA+IY SLV++ Q Sbjct: 240 VEAPTAGSMILAGVLLKMGGYGFLRFSLPMFPHASELFAPVIFALSVIAVIYTSLVALAQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 +D+KK+IAYSS+AHMG+VTIGIF+ + G+ GAMFQM+SHGLVS+ALFFCVGV+YDRLHT Sbjct: 300 SDMKKMIAYSSVAHMGFVTIGIFTFTEQGIAGAMFQMISHGLVSAALFFCVGVVYDRLHT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R+I AYGG+ MPRYAV M +A++GLPGTSGF+GE LV++ ++ S VA + G Sbjct: 360 REIDAYGGVAKVMPRYAVFFMFMMLASVGLPGTSGFVGEMLVLVGAWKASTWVAFFTATG 419 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 +VL A Y LWLYR+V+FG +VQ ++ + LRE + PI++L + FGIYP + D Sbjct: 420 LVLGATYMLWLYRRVMFGKVTKAEVQSMEPMQLRELGIFVPISILVLVFGIYPAFLLDVM 479 Query: 477 SVPLSSIIENYTLK 490 +V + II+ ++ Sbjct: 480 AVSIQIIIDELSVS 493 >gi|84516720|ref|ZP_01004078.1| NADH dehydrogenase subunit M [Loktanella vestfoldensis SKA53] gi|84509188|gb|EAQ05647.1| NADH dehydrogenase subunit M [Loktanella vestfoldensis SKA53] Length = 513 Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust. Identities = 267/496 (53%), Positives = 361/496 (72%), Gaps = 17/496 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLG---CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 L++ TFLP LG VIL G +R+ VAL + + FI SLF+ + FD + F Sbjct: 5 LTLTTFLPVLGA-VILALGLRGDDAAAQRNAKWVALVTTIVTFICSLFILTNFDPANTDF 63 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 QM+E WI Y +GVDGISIL V+LTTFL P I S W ++ +EYMIAFL+LE Sbjct: 64 QMVETADWI-MGLQYKMGVDGISILFVMLTTFLMPLVIASCW-NVTTRVKEYMIAFLILE 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++++G FL+LD++LFY+FFEA LIPMF+IIG+WGG +RIYA++KFFLYTF GS+ ML A+ Sbjct: 122 TLMLGVFLALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAM 181 Query: 183 VVMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTW 231 V M + T+ I L +A FSI Q +W+AFF SFA+K+PM+P HTW Sbjct: 182 VSMFSQAGTTDIPTLMGFAFGTEDFSILGVQIVGGMQTLLWLAFFASFAVKMPMWPVHTW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S+ AP++ +LS IAI+Y SL Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMAPLVLWLSAIAIVYTSL 301 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++VQ D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQM+SHG +S ALF CVGVIY Sbjct: 302 VALVQADMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFISGALFLCVGVIY 361 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTR+I AYGGLV+ MP YA+V + FTMAN+GLPGTSGF+GEFL ++ VFQ + VA+ Sbjct: 362 DRMHTREIDAYGGLVNRMPAYALVFLFFTMANVGLPGTSGFVGEFLTLVGVFQVNTWVAL 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A+ GV+ SA Y+LWLYR+VV G E ++ + D++ RER + P+ V+T+ G+YP Sbjct: 422 VATSGVIFSAGYALWLYRRVVLGDLIKESLRSITDMTRRERLIFAPLVVMTLLLGVYPAL 481 Query: 472 IRDTFSVPLSSIIENY 487 + D ++++I+NY Sbjct: 482 VLDMIGPSVAALIDNY 497 >gi|254510814|ref|ZP_05122881.1| NADH dehydrogenase i, m subunit [Rhodobacteraceae bacterium KLH11] gi|221534525|gb|EEE37513.1| NADH dehydrogenase i, m subunit [Rhodobacteraceae bacterium KLH11] Length = 514 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 259/506 (51%), Positives = 362/506 (71%), Gaps = 15/506 (2%) Query: 6 LSIVTFLPFL--GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSIVTF+P + G+ + +R+ VAL +++ F+ S+ +++ FD + FQ Sbjct: 5 LSIVTFIPAIAAGILALFLHGEDAAAQRNAKWVALVATSVTFLVSIGIYTGFDPANTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 M+E W+ Y +GVDGIS+L V+LTTF+ P IL+SW ++ + +EYMIAFL+LE+ Sbjct: 65 MVEEGEWL-LGLKYKMGVDGISVLFVLLTTFIMPLTILASW-NVTDRVKEYMIAFLLLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++LD++LFY+FFEA LIPMF+IIG+WGG+ RIYA++KFFLYTF GS+ ML A+V Sbjct: 123 LMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLMLVAMV 182 Query: 184 VMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTWL 232 M + T+ I L + S FS+ Q M++AFF SFA+K+PM+P HTWL Sbjct: 183 AMYADAGTTDIEALMSHQFSSEGFSVLGIYIVGGMQTLMFLAFFASFAVKMPMWPVHTWL 242 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S V+ ++S IA++Y SLV Sbjct: 243 PDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSAVMTDVVLWMSAIAVVYTSLV 302 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++VQ D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQMLSHG +S+ALF CVGVIYD Sbjct: 303 ALVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISAALFLCVGVIYD 362 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+HTRDI AYGGLV MP YA+V M+FTMAN+GLPGTSGFIGEFL +M FQ + V + Sbjct: 363 RMHTRDIEAYGGLVIRMPAYALVFMLFTMANVGLPGTSGFIGEFLTLMGAFQVNTWVTAV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+ SA Y+LWLYR+VVFG E ++ + D+S RER + P+ ++T+ G+YP + Sbjct: 423 AATGVIFSAGYALWLYRRVVFGDLIKESLKAMTDMSARERLIFAPLILMTILLGVYPSLV 482 Query: 473 RDTFSVPLSSIIENYTLKTGYSDSVK 498 D +++I NY +++V Sbjct: 483 TDVIGNSTAALISNYDTALAAAEAVT 508 >gi|260428146|ref|ZP_05782125.1| NADH-quinone oxidoreductase subunit m [Citreicella sp. SE45] gi|260422638|gb|EEX15889.1| NADH-quinone oxidoreductase subunit m [Citreicella sp. SE45] Length = 516 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 255/479 (53%), Positives = 352/479 (73%), Gaps = 13/479 (2%) Query: 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISIL 87 R+ +A+ S+ F+ SLF+ FD + FQM+E WI +Y +GVDGIS+L Sbjct: 29 AADRNAKWLAMIASSATFVISLFILFQFDPSNTDFQMVEEGSWI-MGLNYKMGVDGISVL 87 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 V+LTTF+ P ILSSW ++ +EYMIAFL+LE++++G F++LD++LFY+FFEA LIP Sbjct: 88 FVMLTTFIMPLTILSSW-GVKTRVKEYMIAFLMLETLMLGVFMALDLVLFYMFFEAGLIP 146 Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL----YAMSKF 203 MF+IIG+WGG RIYA++KFFLYTF GS+ ML A+V M + T+ I L +A + F Sbjct: 147 MFLIIGIWGGQNRIYASFKFFLYTFLGSVLMLVAMVAMYVDAGTTDIPTLLRHEFAFADF 206 Query: 204 PF-------SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 +Q +W+AFF SFA+K+PM+P HTWLP+AHVQAPTAGSV LA I+LKMGG Sbjct: 207 SVLGIHVVGGMQTMLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGG 266 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 YG +RF LP+FP+ S+ AP++F++S IAI+Y SLV++VQ D+KKLIAYSS+AHMGYVT+ Sbjct: 267 YGFLRFSLPMFPVGSEVMAPLVFWMSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGYVTM 326 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 GIF+ + GV+GA+FQMLSHG VS ALF CVGVIYDR+HTR+I AYGGLV+ MP YA++ Sbjct: 327 GIFAANQQGVDGAIFQMLSHGFVSGALFLCVGVIYDRMHTREIDAYGGLVNRMPAYALIF 386 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 M+FTMAN+GLPGTSGF+GEFL +M +FQ + VA +A+ GV+ SA Y+LWLYR+VVFG Sbjct: 387 MLFTMANVGLPGTSGFVGEFLTLMGIFQVNTWVAFVAASGVIFSAAYALWLYRRVVFGDL 446 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 E ++ ++D++ RE+ + P+ V+T++ G+YP D + ++++NY +D Sbjct: 447 IKESLKTIQDMTSREKWIFAPLVVMTLWLGVYPAAALDIIGPSVEALVDNYDTAVAAAD 505 >gi|323138157|ref|ZP_08073230.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylocystis sp. ATCC 49242] gi|322396619|gb|EFX99147.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylocystis sp. ATCC 49242] Length = 508 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 267/502 (53%), Positives = 363/502 (72%), Gaps = 15/502 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGV--ALGISTI-NFIFSLFVWSVFDKGRSSF 62 LS +TFLP +GV +L G S + A ++T+ F SL+VWS FD ++F Sbjct: 7 LSGLTFLPLVGVAFLLTQK--GDDEASLRNIRWATFLTTLATFALSLYVWSGFDASSAAF 64 Query: 63 QMIEYYHWIDYFCS------YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 Q +E W + Y +GVDG S+ LV+LTTF+ PF IL+SW+S+ + +EYMI Sbjct: 65 QFVEEKSWFGAEGAGKGGLVYKMGVDGFSMPLVLLTTFIMPFSILASWESVTKRVKEYMI 124 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 AFLVLE+++IG F +LD++LFY+FFE LIPMF+IIG+WGG R+YA++KFFLYT GS+ Sbjct: 125 AFLVLETLMIGVFCALDLVLFYLFFEGGLIPMFLIIGIWGGKRRVYASFKFFLYTLAGSL 184 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML AI+ M T+ I L + FP +Q W+W+AFF SFA+K+PM+P HTWLP+AH Sbjct: 185 LMLIAILAMYGVAGTTDITVLLK-TDFPKEMQTWLWLAFFASFAVKMPMWPVHTWLPDAH 243 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APTAGSV LA I+LKMGGYG IRF LP+FP AS YFAP+++ +S+IAI+Y SLV++VQ Sbjct: 244 VEAPTAGSVILAAILLKMGGYGFIRFSLPMFPDASAYFAPLVYAMSVIAIVYTSLVALVQ 303 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 DIKKLIAYSS+AHMGYVT+G+F+ GV+GAMFQM+SHG VS ALF CVGVIYDR+HT Sbjct: 304 EDIKKLIAYSSVAHMGYVTMGLFTLNPQGVQGAMFQMISHGFVSGALFLCVGVIYDRMHT 363 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R+I AYGGLV+ MP YA V M+FTMAN+GLPGT+GFIGEFL +M F+ ++ VA++A+ G Sbjct: 364 REIAAYGGLVNRMPIYAFVFMLFTMANVGLPGTTGFIGEFLSLMGAFKANSWVALIATSG 423 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 V+ SA Y+L+LYR+VVFG + ++ + DL+ RE + P+ LT+++G+ P I Sbjct: 424 VIFSAAYALYLYRRVVFGALEKASLKDIVDLTPREIAIFAPLIALTIYYGVLPGQILSAT 483 Query: 477 SVPLSSIIENYTLKTGYSDSVK 498 + ++I+++ T D+VK Sbjct: 484 QASVDNLIQSH---TALLDAVK 502 >gi|146278029|ref|YP_001168188.1| NADH dehydrogenase subunit M [Rhodobacter sphaeroides ATCC 17025] gi|145556270|gb|ABP70883.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodobacter sphaeroides ATCC 17025] Length = 513 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 256/495 (51%), Positives = 355/495 (71%), Gaps = 15/495 (3%) Query: 6 LSIVTFLPFLGVFV--ILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSI+TF+P + + + +R+ +AL ++ F+ SLF+ + FD + FQ Sbjct: 5 LSIITFIPLVAALIMALFLRGEDAAAQRNAKWLALLATSATFLVSLFLLAGFDPDNTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E Y WI Y +GVDGISIL V+LTTFL P I S+W+ ++ +EYMIAFLVLE+ Sbjct: 65 FVETYDWIAGL-KYKMGVDGISILFVMLTTFLMPLTIASAWE-VENRVKEYMIAFLVLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F +LD++LFY+FFEA LIPMF+IIG+WGG ERIYAA+KFFLYTF GS+ ML A++ Sbjct: 123 LMIGVFCALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYAAFKFFLYTFLGSVLMLIAMI 182 Query: 184 VMCWEKKTSSIIDLYAMS-----------KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 M ++ T+ I L A + +Q +++AFF SFA+K+PM+P HTWL Sbjct: 183 AMYFDAGTTDIPTLMAHEFSSGTLLIAGFQIVGGLQTLLFLAFFASFAVKMPMWPVHTWL 242 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S +P++ +LS IAI+Y SLV Sbjct: 243 PDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDLLSPLVLWLSAIAIVYTSLV 302 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q+D+KKLIAYSS+AHMGYVT+GIF+ + GV+GA+FQMLSHG +S ALF CVGVIYD Sbjct: 303 ALAQSDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMLSHGFISGALFLCVGVIYD 362 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+HTR+I AYGGLV+ MP YA++ M FTMAN+GLPGTSGF+GEFL ++ +FQ + VA++ Sbjct: 363 RMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLVGIFQVNTWVAMV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+LSA Y LWLYR+VVFG E ++ ++D+ RE+ + P+ +T+ G+YP + Sbjct: 423 ATTGVILSAAYGLWLYRRVVFGELVKEALRTIRDMDRREKAIFAPLVAMTLLLGVYPSLV 482 Query: 473 RDTFSVPLSSIIENY 487 D ++ + +Y Sbjct: 483 TDIIGPSVARLTSDY 497 >gi|77463086|ref|YP_352590.1| NADH dehydrogenase subunit M [Rhodobacter sphaeroides 2.4.1] gi|221638942|ref|YP_002525204.1| NADH dehydrogenase subunit M [Rhodobacter sphaeroides KD131] gi|332557959|ref|ZP_08412281.1| NADH:ubiquinone oxidoreductase subunit M [Rhodobacter sphaeroides WS8N] gi|77387504|gb|ABA78689.1| NADH dehydrogenase I chain M (NADH-ubiquinone oxidoreductase chain 13) [Rhodobacter sphaeroides 2.4.1] gi|221159723|gb|ACM00703.1| Proton-translocating NADH-quinone oxidoreductase, chain M precursor [Rhodobacter sphaeroides KD131] gi|332275671|gb|EGJ20986.1| NADH:ubiquinone oxidoreductase subunit M [Rhodobacter sphaeroides WS8N] Length = 513 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 257/500 (51%), Positives = 360/500 (72%), Gaps = 15/500 (3%) Query: 6 LSIVTFLPFLGVFV--ILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSI+TF+P + + + +R+ +AL ++ F+ SLF+ + FD + FQ Sbjct: 5 LSIITFIPLVAALIMALFLRGDDAAAQRNAKWLALLATSATFLVSLFLLAGFDAQDTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E Y WI Y +GVDGISIL V+LTTFL P I S+W+ ++ +EYMIAFL+LE+ Sbjct: 65 FVESYDWIAGL-QYKMGVDGISILFVMLTTFLMPLTIASAWE-VETRVKEYMIAFLILET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F +LD++LFY+FFEA LIPMF+IIG+WGG +RIYAA+KFFLYTF GS+ ML A++ Sbjct: 123 LMLGVFCALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYAAFKFFLYTFLGSVLMLIAMI 182 Query: 184 VMCWEKKTSSIIDLYA-------MSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTWL 232 M ++ T+ I L + M+ F I Q +++AFF SFA+K+PM+P HTWL Sbjct: 183 AMYYDAGTTDIPTLLSHEFSSGTMTLAGFQIVGGLQTLLFLAFFASFAVKMPMWPVHTWL 242 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S+ +P++F++S IAI+Y SLV Sbjct: 243 PDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPIGSELLSPLVFWMSAIAIVYTSLV 302 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q+D+KKLIAYSS+AHMGYVT+GIF+ + GV+GA+FQMLSHG +S ALF CVGVIYD Sbjct: 303 ALAQSDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMLSHGFISGALFLCVGVIYD 362 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+HTR+I AYGGLV+ MP YA++ M FTMAN+GLPGTSGFIGEFL ++ +FQ + VA++ Sbjct: 363 RMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFIGEFLTLVGIFQVNTWVAMV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+LSA Y LWLYR+VVFG E ++ ++D+ RE+ + P+ +T+ G+YP + Sbjct: 423 ATSGVILSAAYGLWLYRRVVFGELVKEALRTIRDMDRREKAIFAPLVAMTLLLGVYPSLV 482 Query: 473 RDTFSVPLSSIIENYTLKTG 492 D ++ + +Y T Sbjct: 483 TDIIGPSVARLTTDYQSATA 502 >gi|260434163|ref|ZP_05788134.1| NADH-quinone oxidoreductase subunit m [Silicibacter lacuscaerulensis ITI-1157] gi|260417991|gb|EEX11250.1| NADH-quinone oxidoreductase subunit m [Silicibacter lacuscaerulensis ITI-1157] Length = 513 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 258/495 (52%), Positives = 356/495 (71%), Gaps = 15/495 (3%) Query: 6 LSIVTFLPFL--GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSIVTF+P + G+ + +R+ +AL +T+ F+ S+ +++ FD FQ Sbjct: 5 LSIVTFIPAISAGLMALFLHGNDAAAQRNAKWIALVATTVTFLVSIGIYTEFDPSNPGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 M+E W Y +GVDGIS+L V+LTTF+ P IL+SW ++ + +EYMIAFL+LE+ Sbjct: 65 MVEEAEWF-MGLKYKMGVDGISVLFVLLTTFIMPLTILASW-NVTDRVKEYMIAFLLLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++LD++LFY+FFEA LIPMF+IIG+WGG +RIYA++KFFLYTF GS+ ML A+V Sbjct: 123 LMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMV 182 Query: 184 VMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTWL 232 M + T+ I L + S FS+ Q +++AFF SFA+K+PM+P HTWL Sbjct: 183 AMYADAGTTDIAALMTHQFSSESFSVLGIHIVGGMQTLLFLAFFASFAVKMPMWPVHTWL 242 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S ++ +LS IA++Y SLV Sbjct: 243 PDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSAVMTDLVLWLSAIAVVYTSLV 302 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++VQ D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQMLSHG +S+ALF CVGVIYD Sbjct: 303 ALVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISAALFLCVGVIYD 362 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+HTRDI AYGGLV MP YA+V M+FTMAN+GLPGTSGFIGEFL +M FQ + V + Sbjct: 363 RMHTRDIDAYGGLVIRMPAYALVFMLFTMANVGLPGTSGFIGEFLTLMGTFQVNTWVTAV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+ SA Y+LWLYR+VVFG E ++ + D+S RER + P+ V+T+ G+YP + Sbjct: 423 AASGVIFSAAYALWLYRRVVFGDLIKESLKSITDMSTRERLIFAPLIVMTILLGVYPSLV 482 Query: 473 RDTFSVPLSSIIENY 487 D +++I NY Sbjct: 483 TDVIGTSTAALISNY 497 >gi|259419140|ref|ZP_05743057.1| NADH-quinone oxidoreductase subunit m [Silicibacter sp. TrichCH4B] gi|259345362|gb|EEW57216.1| NADH-quinone oxidoreductase subunit m [Silicibacter sp. TrichCH4B] Length = 521 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 267/505 (52%), Positives = 365/505 (72%), Gaps = 19/505 (3%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSIVTF+P L V+ +R+ VAL ++I F SLF++ FD + FQ Sbjct: 5 LSIVTFIPALAAAVMALLMRGEDEAAQRNAKYVALMATSITFFVSLFIYFQFDPSNTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI + Y +GVDGIS+L V+LTTF+ P IL+SW S+ +EYMIAFL+LE+ Sbjct: 65 FVEERAWI-FGLKYKMGVDGISVLFVLLTTFVMPLTILASW-SVTTRVKEYMIAFLLLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++LDM+LFY+FFEA LIPMF+IIG+WGG +RIYA++KFFLYTFFGS+ ML A+V Sbjct: 123 LMLGVFMALDMVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFFGSVLMLVAMV 182 Query: 184 VMCWEKKTSSIIDLYAMSKFPFS------------IQYWMWIAFFCSFAIKIPMFPFHTW 231 M ++ T+ I+ L A +F ++ +Q +++AFF SFA+K+PM+P HTW Sbjct: 183 AMYFDAGTTDIVKLLA-HEFSYASMNVLGIHVLGGMQTLLFLAFFASFAVKMPMWPVHTW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S+ VI ++S IAI+Y SL Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMTDVILWMSAIAIVYTSL 301 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V+MVQ D+KKLIAYSS+AHMG+VT+GIF+ + GV+GA+FQMLSHG +S+ALF CVGVIY Sbjct: 302 VAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDGAIFQMLSHGFISAALFLCVGVIY 361 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTRDI AYGGLV MP YA+V M FTM N+GLPGTSGFIGEFL +M VFQ + VA+ Sbjct: 362 DRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTLMGVFQENTWVAL 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A+ GV+ SA Y+LWLYR+VVFG E ++ +KD++ RE+ + P+ +T+ GIYP Sbjct: 422 VATTGVIFSACYALWLYRRVVFGDLIKESLKSIKDMNAREKWIFAPLVAMTLLLGIYPSV 481 Query: 472 IRDTFSVPLSSIIENYTLKTGYSDS 496 + D ++++ ++ T +D+ Sbjct: 482 VTDVIGPSTEALVQ--SVNTAVADA 504 >gi|260574776|ref|ZP_05842779.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodobacter sp. SW2] gi|259023193|gb|EEW26486.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodobacter sp. SW2] Length = 512 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 259/508 (50%), Positives = 362/508 (71%), Gaps = 21/508 (4%) Query: 5 FLSIVTFLPFLG--VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LSI+TFLP + + + +R+ +AL ++ FI SLF+ + FD + Sbjct: 4 LLSIITFLPLVAATILALFLRGDDAAAQRNAKWLALVATSATFILSLFLLAGFDPADTGM 63 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E Y WI Y +GVDGIS+L V+LTTFL P I + W ++ +EYMIAFLVLE Sbjct: 64 QFLEDYDWI-VGLHYKMGVDGISVLFVLLTTFLMPITIAACWP-VEVRVKEYMIAFLVLE 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +++IG F +LD++LFY+FFEA LIPMF+IIG+WGG ERIYAA+KFFLYTF GS+ ML A+ Sbjct: 122 TLMIGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYAAFKFFLYTFLGSVLMLVAM 181 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFS--------------IQYWMWIAFFCSFAIKIPMFPF 228 +VM + T+ D+ A+ +F F+ +Q +++AFF SFA+KIPM+P Sbjct: 182 IVMYVQAGTT---DMVALMQFDFAHETLGIGGFQIVGGLQTLLFLAFFASFAVKIPMWPV 238 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 HTWLP+AHVQAPTAGSV LA +MLKMGGYG +RF LP+FP+ ++ P++ ++S+IAI+Y Sbjct: 239 HTWLPDAHVQAPTAGSVILAAVMLKMGGYGLLRFSLPMFPVGAEVLGPLVLWMSVIAIVY 298 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 SLV++ Q+D+KKLIAYSS+AHMG+VT+GIF+ + GV+GA+FQMLSHG +S ALF VG Sbjct: 299 TSLVALAQSDMKKLIAYSSVAHMGFVTMGIFAVNQQGVDGAIFQMLSHGFISGALFLIVG 358 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 VIYDR+HTR+I AYGGLV+ MP YA++ M FTMAN+GLPGTSGF+GEFL ++ +FQ + Sbjct: 359 VIYDRMHTREIDAYGGLVNRMPVYALIFMFFTMANVGLPGTSGFVGEFLTLVGIFQVNTW 418 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 VA +A+ GV+LSA Y+LWLYR+VVFG E ++ + D++ RER + P+ V+T+ G+Y Sbjct: 419 VAAVATTGVILSAAYALWLYRRVVFGDLIKEALKTITDMTGRERAIFAPLVVMTLLLGVY 478 Query: 469 PVPIRDTFSVPLSSIIENYTLKTGYSDS 496 P + D + +++ +Y G SD+ Sbjct: 479 PSLVTDLIGPSVGALVADYHTAPGVSDA 506 >gi|254455716|ref|ZP_05069145.1| NADH dehydrogenase i chain m [Candidatus Pelagibacter sp. HTCC7211] gi|207082718|gb|EDZ60144.1| NADH dehydrogenase i chain m [Candidatus Pelagibacter sp. HTCC7211] Length = 493 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 248/488 (50%), Positives = 362/488 (74%), Gaps = 1/488 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 MN P LS + LP +G + F+ + V+L +++NF+ S+++W FD+ S Sbjct: 1 MNFPILSSLILLPTIGALFLFFTKDKEGNNSTAKYVSLFTTSVNFLISIYLWVSFDQSTS 60 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 +FQ IE WI+ F +Y +GVDGISIL ++LTTF+TP CI+S S+++ R+++IA L+ Sbjct: 61 NFQFIEDRTWIEGFINYKVGVDGISILFIILTTFITPLCIISVNNSVKKRLRDFLIAILI 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LES +IG F +LD+++FY+FFEA LIPMF+IIG+WGG +R+Y+A+KFFLYT GS+ ML Sbjct: 121 LESFMIGVFCALDLVVFYLFFEAGLIPMFLIIGIWGGPKRVYSAFKFFLYTLLGSVLMLV 180 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ + W T+ +I LY + Q +W+AFF SFA+K PM+P HTWLP+AHV+AP Sbjct: 181 AIISIYWISGTTDVIKLYELG-IDAKYQNLLWLAFFSSFAVKTPMWPVHTWLPDAHVEAP 239 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I+LKM GYG IRF L LFP+AS+ F P+I+ LS+IAII SL++++Q D+K Sbjct: 240 TAGSVLLAAILLKMAGYGFIRFSLGLFPIASEVFTPLIYALSVIAIIVTSLIALMQEDMK 299 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMG+VT+G+F+ + G+EG++ QM+SHGLVS+ALF CVGV+YDR+H+R I Sbjct: 300 KLIAYSSVAHMGFVTLGVFTIQQQGIEGSIIQMISHGLVSAALFLCVGVVYDRMHSRLIS 359 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 +YGG+V +P+Y+++ M+FT+A +GLPGTSGF+GEFL++M+VF+++ VAVLAS GV+L Sbjct: 360 SYGGIVTIIPKYSILFMIFTLAALGLPGTSGFVGEFLILMAVFKDNFLVAVLASIGVILG 419 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y LWLY++V+FG ++ + DL E ++ +A+ T++FG YP P+ +T V + Sbjct: 420 AAYMLWLYKRVIFGKLINSDLKSMMDLDRSEYFILTCLAIPTLYFGFYPDPLINTIEVSV 479 Query: 481 SSIIENYT 488 + +I+ Y Sbjct: 480 NDLIDMYN 487 >gi|89070157|ref|ZP_01157486.1| NADH dehydrogenase subunit M [Oceanicola granulosus HTCC2516] gi|89044274|gb|EAR50420.1| NADH dehydrogenase subunit M [Oceanicola granulosus HTCC2516] Length = 525 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 263/501 (52%), Positives = 350/501 (69%), Gaps = 22/501 (4%) Query: 6 LSIVTFLPFLGVFVI--LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS+ TF P LG ++ + + VA + F+ SLF+ FD S FQ Sbjct: 5 LSLTTFFPLLGALILALFLRGDDAAAQSNAKWVAFATTLATFVISLFILFGFDGSSSEFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E W+ Y +GVDGIS+L V+LTTFL P I + W ++ +EYMIAFLVLE+ Sbjct: 65 FVEDRQWL-LGLRYRMGVDGISVLFVMLTTFLMPITIAACW-NVTHRVKEYMIAFLVLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F+SLD++LFY+FFE LIPMF+IIG+WGG ERIYA++KFFLYTF GS+ ML A+V Sbjct: 123 LMIGVFVSLDLMLFYLFFEGGLIPMFLIIGIWGGKERIYASFKFFLYTFLGSVLMLVAMV 182 Query: 184 VMCWEKKTSSII----DLYAMSKFPFS--------------IQYWMWIAFFCSFAIKIPM 225 M + T+ I D+ + + F+ Q MW+AFF SFA+K+PM Sbjct: 183 AMYAQAGTTCIAACGPDVVGLLDYNFASETIPLFGFQIIGGAQTLMWLAFFASFAVKMPM 242 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 +P HTWLP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+AS+ AP++ +LS IA Sbjct: 243 WPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVASELLAPLVLWLSAIA 302 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 I+Y SLV++VQ D+KKLIAYSS+AHMGYVT+GIF+ + G++GA+FQMLSHG +S ALF Sbjct: 303 IVYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFAANQQGIDGAIFQMLSHGFISGALFL 362 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 CVGVIYDR+HTRDI AYGGLV+ MP YA + M+FTMAN+GLPGTSGFIGEFL +M VFQ Sbjct: 363 CVGVIYDRMHTRDIDAYGGLVNRMPAYAAIFMLFTMANVGLPGTSGFIGEFLTLMGVFQV 422 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 + VA +A+ GV+LSA Y+LWLYR+VV G E ++ + D++ RE+ + P+ V+T+ Sbjct: 423 NTWVAAIATTGVILSAGYALWLYRRVVMGDLIKESLRSITDMTGREKAIFAPLVVMTILL 482 Query: 466 GIYPVPIRDTFSVPLSSIIEN 486 G+YP + D + S+I N Sbjct: 483 GVYPSLVTDIIGPSVESLIAN 503 >gi|149202652|ref|ZP_01879624.1| NADH dehydrogenase subunit M [Roseovarius sp. TM1035] gi|149143934|gb|EDM31968.1| NADH dehydrogenase subunit M [Roseovarius sp. TM1035] Length = 525 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 258/495 (52%), Positives = 353/495 (71%), Gaps = 15/495 (3%) Query: 5 FLSIVTFLPFLG--VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LSIVTF+P + + + +R+ VAL +T+ F+ SLF+ FD + F Sbjct: 14 LLSIVTFIPAVAAAILAVFLRGSDEAAQRNAKWVALIATTLTFVVSLFILFDFDASNTGF 73 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E W+ Y +GVDGIS+L V+LTTF+ P I +SW + +EYMIAFL+LE Sbjct: 74 QFVEEREWL-LGLKYKMGVDGISVLFVMLTTFMMPLTIAASW-GVTTRVKEYMIAFLLLE 131 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++++G F++LD++LFY+FFEA LIPMF+IIG+WGG ERIYA++KFFLYTF GS+ ML A+ Sbjct: 132 TLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFLGSVLMLVAM 191 Query: 183 VVMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTW 231 V M + T+ I L + FSI Q M++AFF SFA+K+PM+P HTW Sbjct: 192 VAMFSDAGTTDIAALLKHEFESETFSILGVQVIGGMQTLMFLAFFASFAVKMPMWPVHTW 251 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S+ P++ ++S IAI+Y SL Sbjct: 252 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPIGSEVLTPLVLWMSAIAIVYTSL 311 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++ Q+D+KKLIAYSS+AHMGYVT+GIF+ + GV+GA+FQMLSHG +S ALF CVGVIY Sbjct: 312 VALAQSDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMLSHGFISGALFLCVGVIY 371 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTR+I AYGGLV+ MP YA++ M FTMAN+GLPGTSGF+GEFL ++ VFQ + VA Sbjct: 372 DRMHTREIDAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLVGVFQVNTWVAA 431 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A+ GV+LSA Y+LWLYR+VV G E ++ + D++ RER + P+ V+T+ G+YP Sbjct: 432 VATSGVILSAAYALWLYRRVVMGDLIKESLRTITDMTKRERAIFAPLVVMTLLLGVYPRL 491 Query: 472 IRDTFSVPLSSIIEN 486 + D + ++I N Sbjct: 492 VTDITGPSVEALISN 506 >gi|99080600|ref|YP_612754.1| NADH dehydrogenase subunit M [Ruegeria sp. TM1040] gi|99036880|gb|ABF63492.1| proton-translocating NADH-quinone oxidoreductase chain M [Ruegeria sp. TM1040] Length = 521 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 266/505 (52%), Positives = 364/505 (72%), Gaps = 19/505 (3%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSIVTF+P L V+ +R+ VAL ++I FI SLF++ FD + FQ Sbjct: 5 LSIVTFIPALAAAVMALLMRGDDEAAQRNAKYVALMATSITFIVSLFIYFQFDPSDTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI + Y +GVDGIS+L V+LTTF+ P IL+SW S+ +EYMIAFLVLE+ Sbjct: 65 FVEERDWI-FGLKYKMGVDGISVLFVMLTTFVMPLTILASW-SVTNRVKEYMIAFLVLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++LDM+LFY+FFEA LIPMF+IIG+WGG +RIYA++KFFLYTFFGS+ ML A+V Sbjct: 123 LMLGVFMALDMVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFFGSVLMLVAMV 182 Query: 184 VMCWEKKTSSIIDLYAMSKFPFS------------IQYWMWIAFFCSFAIKIPMFPFHTW 231 M ++ T+ I+ L + +F + +Q +++AFF SFA+K+PM+P HTW Sbjct: 183 AMYFDAGTTDIVKLLS-HEFSYEGFNVLGIHVLGGMQTLLFLAFFASFAVKMPMWPVHTW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S+ VI ++S IAI+Y SL Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSEVMTDVILWMSAIAIVYTSL 301 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V+MVQ D+KKLIAYSS+AHMG+VT+GIF+ + GV+GA+FQMLSHG +S+ALF CVGVIY Sbjct: 302 VAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDGAIFQMLSHGFISAALFLCVGVIY 361 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTRDI AYGGLV MP YA+V M FTM N+GLPGTSGF+GEFL +M FQ + VA Sbjct: 362 DRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFVGEFLTLMGAFQENTWVAF 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A+ GV+ SA Y+LWLYR+VVFG E ++ +KD++ RE+ + P+ V+T+ G+YP Sbjct: 422 VATTGVIFSACYALWLYRRVVFGDLIKESLKAIKDMNAREKWIFAPLIVMTLLLGVYPSV 481 Query: 472 IRDTFSVPLSSIIENYTLKTGYSDS 496 + D ++++ ++ T +D+ Sbjct: 482 VTDVIGPSTEALVQ--SVNTAVADA 504 >gi|302383062|ref|YP_003818885.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brevundimonas subvibrioides ATCC 15264] gi|302193690|gb|ADL01262.1| proton-translocating NADH-quinone oxidoreductase, chain M [Brevundimonas subvibrioides ATCC 15264] Length = 495 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 264/489 (53%), Positives = 346/489 (70%), Gaps = 4/489 (0%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGV--ALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS+VTFLP +G +IL + RR AL + + S + FD ++Q Sbjct: 8 LSVVTFLPLVGALLILAGRFAAPARRDDIARWGALVTTLVTLAVSAVLVLSFDSTNPAYQ 67 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E Y W YHLGVDGISIL V+LT FL P CIL+SWKSI+ +YMIAFLVLE+ Sbjct: 68 FVENYAWFAG-AGYHLGVDGISILFVLLTAFLMPICILASWKSIETRVVDYMIAFLVLET 126 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +VIG F SLD+ LFYIFFE +L+PMF+IIGVWGG+ RIYAAYKFFLYT GS+ ML A++ Sbjct: 127 LVIGVFTSLDLFLFYIFFEGTLVPMFIIIGVWGGANRIYAAYKFFLYTLLGSVLMLLAML 186 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M E T+SI +L + P Q +W+AFF SFA+K+PM+P HTWLP+AHVQAPTAG Sbjct: 187 WMANEAGTTSIPELKTFAFSP-QAQSVLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAG 245 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI+LK+GGYG I F +P+FP AS + P++F LS+IAI Y SLV+ QTDIKKLI Sbjct: 246 SVILAGILLKLGGYGFILFNVPMFPEASIQYQPLVFTLSVIAIAYTSLVAFRQTDIKKLI 305 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHMG+VT+GIF+G G++GA+FQMLSHGL+S ALF CVGV+YDR+HTR+I YG Sbjct: 306 AYSSVAHMGFVTMGIFAGNAQGMQGAIFQMLSHGLISGALFLCVGVVYDRMHTREIAFYG 365 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL + MP YA + ++FTMAN+GLPGTSGFIGE L + V+Q S A +A+ GV+LSA+Y Sbjct: 366 GLTNRMPWYAAIFLMFTMANVGLPGTSGFIGEMLTMTGVYQASTWAAFVAATGVILSAVY 425 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 +L LYR V+FG + +KD+ LRE + P+ V T++ G+ P + + + + ++ Sbjct: 426 ALTLYRNVMFGEITNPALATIKDIDLRELVIFVPLIVGTIWLGVQPDLVLNYTAASVDAV 485 Query: 484 IENYTLKTG 492 + + L TG Sbjct: 486 VNGWQLATG 494 >gi|86137581|ref|ZP_01056158.1| NADH dehydrogenase subunit M [Roseobacter sp. MED193] gi|85825916|gb|EAQ46114.1| NADH dehydrogenase subunit M [Roseobacter sp. MED193] Length = 515 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 258/504 (51%), Positives = 358/504 (71%), Gaps = 15/504 (2%) Query: 6 LSIVTFLPF--LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSIVTF+P V +L +R+ +AL +++ F+ SL ++ FD + FQ Sbjct: 5 LSIVTFIPAGAAAVMALLMRGEDEAAQRNAKWLALMATSLTFLVSLGIYFQFDPNNTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI + Y +GVDGIS+L V+LTTF+ P IL+SW ++ +EYMIAFL+LE+ Sbjct: 65 FVEERDWI-FGLQYKMGVDGISVLFVMLTTFVMPLTILASW-NVSTRVKEYMIAFLLLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++LD++LFY+FFEA LIPMF+IIG+WGG +RIYA++KFFLYTF GS+ ML A+V Sbjct: 123 LMLGVFMALDLVLFYVFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMV 182 Query: 184 VMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTWL 232 M + +T+ I+ L ++ S F + Q M++AFF SFA+K+PM+P HTWL Sbjct: 183 AMYVDAQTTDIVQLLTHSFSAASFDVLGIHVVGGMQTLMFLAFFASFAVKMPMWPVHTWL 242 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ + +I ++S IA++Y SLV Sbjct: 243 PDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILWMSAIAVVYTSLV 302 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 +MVQ D+KKLIAYSS+AHMG+VT+GIF+ + GV+GA+FQMLSHG +S+ALF CVGVIYD Sbjct: 303 AMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDGAIFQMLSHGFISAALFLCVGVIYD 362 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+HTRDI AYGGLV MP YA+V M FTM N+GLPGTSGF+GEFL +M FQ + VA + Sbjct: 363 RMHTRDINAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFVGEFLTLMGAFQKNTWVAAV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+ SA Y+LWLYR+VVFG ++ ++D+ RER + P+ V+T+ G+YP + Sbjct: 423 AASGVIFSAGYALWLYRRVVFGDLIKGSLKTIQDMDARERFIFAPLVVMTILLGVYPSLV 482 Query: 473 RDTFSVPLSSIIENYTLKTGYSDS 496 D S ++I N+ +D+ Sbjct: 483 TDIISPSTEALIANFNQSLAAADT 506 >gi|262277289|ref|ZP_06055082.1| NADH-quinone oxidoreductase subunit m (nadhdehydrogenase i subunit m) (ndh-1 subunit m) [alpha proteobacterium HIMB114] gi|262224392|gb|EEY74851.1| NADH-quinone oxidoreductase subunit m (nadhdehydrogenase i subunit m) (ndh-1 subunit m) [alpha proteobacterium HIMB114] Length = 499 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 257/502 (51%), Positives = 361/502 (71%), Gaps = 10/502 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-----VALGISTINFIFSLFVWSVFD 56 +P L++ TFLP +GVF +LF G F ++L S I F+ S+ + + F+ Sbjct: 3 EIPILTLTTFLPLIGVFFLLFLK----GEEEFVSRTSGYISLLTSGIVFLASILILNNFN 58 Query: 57 KGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 FQ +E + WI F +Y +G+DGIS+ ++LTTF+TP CIL++ S+++ RE++I Sbjct: 59 YNNPDFQFVEQHDWIFNFVNYKVGIDGISLSFILLTTFITPICILATINSVKKRLREFLI 118 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 A L++E+M+IG F SLD+ +FY+FFEA LIPMF+IIG+WGG +R+Y+A+KFFLYT FGSI Sbjct: 119 ALLLMETMMIGVFCSLDLFIFYLFFEAGLIPMFLIIGIWGGEKRVYSAFKFFLYTLFGSI 178 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 FML +I+ + ++ T + L + + Q ++W+ FF SFA+K PM+P HTWLP+AH Sbjct: 179 FMLISIIYIYFDAGTLDVEKLLNI-QINKDYQKYLWLGFFASFAVKTPMWPVHTWLPDAH 237 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT+GSV LA I+LKM GYG IRF L LFP AS YFAP++F LS+IAIIY SLV++VQ Sbjct: 238 VEAPTSGSVILAAILLKMAGYGFIRFSLGLFPDASVYFAPLVFALSIIAIIYTSLVALVQ 297 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+KKLIAYSS+AHMG+VTIGIF K G+EG++FQM+SHG++SSALF CVGV+YDR+HT Sbjct: 298 KDMKKLIAYSSVAHMGFVTIGIFVFNKQGIEGSIFQMISHGIISSALFLCVGVVYDRMHT 357 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R+I YGG+V+ MP+YAV+ MVFT+ ++GLPGTSGF+GE LV++ F+ + +A A+ G Sbjct: 358 REISEYGGVVNIMPKYAVMFMVFTLGSLGLPGTSGFVGEILVLIGSFKYNYWIAFFAATG 417 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 V+LSA YSLWLYR+VVFG EK++ L DL+ E ++ P+ ++T+ G YP I D Sbjct: 418 VILSACYSLWLYRRVVFGKITNEKIRNLTDLNKNEYLILTPLLIMTIILGFYPALILDLI 477 Query: 477 SVPLSSIIENYTLKTGYSDSVK 498 S + + N T + +VK Sbjct: 478 SSSVDKVSSNMTDYIKLAGAVK 499 >gi|114765012|ref|ZP_01444159.1| NADH dehydrogenase subunit M [Pelagibaca bermudensis HTCC2601] gi|114542559|gb|EAU45584.1| NADH dehydrogenase subunit M [Roseovarius sp. HTCC2601] Length = 516 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 251/480 (52%), Positives = 351/480 (73%), Gaps = 15/480 (3%) Query: 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISIL 87 R+ +A+ ++ F+ SLF+ FD + FQM+E WI +Y +GVDGIS+L Sbjct: 29 AADRNAKWLAMIATSATFVISLFILFQFDASNTGFQMVEEGTWI-MGMNYKMGVDGISVL 87 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 V+LTTF+ P IL+SW ++ +EYMIAFL+LE++++G F++LD++LFY+FFEA LIP Sbjct: 88 FVMLTTFMMPLTILASWD-VKLRVKEYMIAFLLLETLMLGVFMALDLVLFYLFFEAGLIP 146 Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS- 206 MF+IIG+WGG RIYA++KFFLYTF GS+ ML A+V M + T+ I L A +F F+ Sbjct: 147 MFLIIGIWGGKNRIYASFKFFLYTFLGSVLMLVAMVAMYADAGTTDIPTLLA-HEFAFAD 205 Query: 207 -----------IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 +Q +W+AFF SFA+K+PM+P HTWLP+AHVQAPTAGSV LA I+LKMG Sbjct: 206 FEVLGIHIVGGLQTMLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMG 265 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 GYG +RF LP+FP+ S+ AP++F++S IAI+Y SLV++VQ D+KKLIAYSS+AHMGYVT Sbjct: 266 GYGFLRFSLPMFPVGSEVMAPLVFWMSAIAIVYTSLVALVQEDMKKLIAYSSVAHMGYVT 325 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 +GIF+ + G++GA+FQM+SHG +S ALF CVGVIYDR+HTR+I AYGGLV+ MP YA++ Sbjct: 326 MGIFAANQQGIDGAIFQMISHGFISGALFLCVGVIYDRMHTREIDAYGGLVNRMPAYALI 385 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 M+FTMAN+GLPGTSGFIGEFL +M +FQ + VA +A+ GV+ SA Y+LWLYR+VV G Sbjct: 386 FMLFTMANVGLPGTSGFIGEFLTLMGIFQVNTWVAAVAASGVIFSAAYALWLYRRVVLGD 445 Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 E ++ ++D++ RE+ + P+ V+T++ G+YP D + +++ NY +D Sbjct: 446 LIKESLRTIQDMTSREKWIFAPLVVMTLWLGVYPAAALDIIGPSVEALVGNYDTAVAAAD 505 >gi|149914596|ref|ZP_01903126.1| NADH dehydrogenase subunit M [Roseobacter sp. AzwK-3b] gi|149811389|gb|EDM71224.1| NADH dehydrogenase subunit M [Roseobacter sp. AzwK-3b] Length = 515 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 249/472 (52%), Positives = 349/472 (73%), Gaps = 13/472 (2%) Query: 27 GCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISI 86 +RS VAL +++ F+ S+F+ + FD + FQM+E W+ Y +GVDGIS+ Sbjct: 28 AAAQRSAKWVALSATSLTFLVSIFILTGFDPNDTGFQMVEEREWL-LGLQYKMGVDGISV 86 Query: 87 LLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLI 146 L V+LTTF+ P I +SW ++ + +EYMIAFL+LE++++G F++LD++LFY+FFEA LI Sbjct: 87 LFVMLTTFIMPITIAASW-NVTKRVKEYMIAFLLLETLMLGVFMALDLVLFYLFFEAGLI 145 Query: 147 PMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL--YAMSKFP 204 PMF+IIG+WGG ER+YA++KFFLYTF GS+ ML A+V M + T+ I+DL + Sbjct: 146 PMFLIIGIWGGKERVYASFKFFLYTFLGSVLMLIAMVAMFSDAGTTDIVDLMNHQFGSES 205 Query: 205 FSI---------QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 FS+ Q M+IAFF SFA+K+PM+P HTWLP+AHVQAPTAGSV LA I+LKMG Sbjct: 206 FSVLGIHIVGGMQTLMFIAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMG 265 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 GYG +RF LP+FP+ ++ P+I ++S IAI+Y SLV++ Q D+KKLIAYSS+AHMGYVT Sbjct: 266 GYGFLRFSLPMFPVGAELLTPLILWMSAIAIVYTSLVALAQEDMKKLIAYSSVAHMGYVT 325 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 +GIFS + G++GA+FQM+SHG +S ALF VGVIYDR+HTR+I AYGGLV+ MP YA++ Sbjct: 326 MGIFSVNQQGIDGAIFQMISHGFISGALFLIVGVIYDRMHTREIDAYGGLVNRMPAYALI 385 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 ++FTMAN+GLPGTSGFIGEFL ++ VFQ + VA++A+ GV+LSA Y+LWLYR+V+ G Sbjct: 386 FLLFTMANVGLPGTSGFIGEFLTLVGVFQVNTWVALVATTGVILSAAYALWLYRRVMLGD 445 Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 E ++ + D++ RER + P+ V+T+ G+YP + D + ++I NY Sbjct: 446 LIKESLKSINDMTGRERAIFAPLVVMTLLLGVYPSLVTDIIGPSVEALISNY 497 >gi|312116314|ref|YP_004013910.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodomicrobium vannielii ATCC 17100] gi|311221443|gb|ADP72811.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodomicrobium vannielii ATCC 17100] Length = 512 Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust. Identities = 257/485 (52%), Positives = 345/485 (71%), Gaps = 2/485 (0%) Query: 4 PFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P L+ + LP +G ++ + ++ +AL + + F SL + S FD F Sbjct: 5 PILTTLMLLPAVGALLLAVLRGTDEAALKNARWIALWTTVVTFALSLILLSDFDYANPGF 64 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E+ W+ +Y++GVDG+S+ V+LTTFL P IL+SWKSI +EYMIAFL+LE Sbjct: 65 QFVEHRPWLSDTITYYVGVDGLSLPFVILTTFLMPLTILASWKSITVRVKEYMIAFLILE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +++IG F +LD++LFY+FFE LIPMF+IIGVWGG R+YA++KFFLYT GS+FML AI Sbjct: 125 ALMIGVFCALDLVLFYLFFEGGLIPMFIIIGVWGGPRRVYASFKFFLYTLLGSLFMLIAI 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 +VM T+ I L FP ++Q W+W AF SFA+K+PM+P HTWLP+AHV+APTA Sbjct: 185 LVMYGMAGTTEIPALLKYD-FPVNVQAWLWFAFLASFAVKLPMWPVHTWLPDAHVEAPTA 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LA I+LKMGGYG IRF LP+FP AS FAP++F L + AIIY SLV+ Q D+KKL Sbjct: 244 GSVVLAAILLKMGGYGFIRFSLPMFPDASVQFAPLMFTLGVAAIIYTSLVAFAQKDMKKL 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHMG+VTIG+FSG + GV+GA+FQM+SHG+VS ALF VGV+YDR+HTR+I AY Sbjct: 304 IAYSSVAHMGFVTIGVFSGTEQGVQGAVFQMISHGIVSGALFLAVGVVYDRMHTREIAAY 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGL MP YA MVFTMAN+GLPGTSGFIGEFL ++ FQ + A A FG++LSA+ Sbjct: 364 GGLADRMPIYAFFFMVFTMANVGLPGTSGFIGEFLTLLGTFQANTVAAFFACFGLILSAV 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y+L LYR+++FG + + +KD+S RE ++ P+ +LT+ G YP P+ D S + + Sbjct: 424 YALTLYRRMIFGKLEKPSLATIKDMSPREIGIMAPLLILTIVLGFYPKPVLDMTSGSVKA 483 Query: 483 IIENY 487 +I Y Sbjct: 484 MILPY 488 >gi|56697602|ref|YP_167971.1| NADH dehydrogenase subunit M [Ruegeria pomeroyi DSS-3] gi|56679339|gb|AAV96005.1| NADH dehydrogenase I, M subunit [Ruegeria pomeroyi DSS-3] Length = 513 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 254/472 (53%), Positives = 347/472 (73%), Gaps = 13/472 (2%) Query: 27 GCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISI 86 +R+ VAL +T+ F+ S+ +++ FD + FQM+E W+ Y +GVDGIS+ Sbjct: 28 AAAQRNAKWVALFATTVTFLVSIGIYTGFDPADTGFQMVEEGEWL-MGLKYKMGVDGISV 86 Query: 87 LLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLI 146 L V+LTTF+ P IL+SW+ + +EYMIAFL+LE++++G F++LD++LFY+FFEA LI Sbjct: 87 LFVLLTTFIMPLTILASWE-VTTRVKEYMIAFLLLETLMLGVFMALDLVLFYLFFEAGLI 145 Query: 147 PMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL--YAMSKFP 204 PMF+IIG+WGG ERIYA++KFFLYTF GS+ ML A+V M + T+ I L + S Sbjct: 146 PMFLIIGIWGGKERIYASFKFFLYTFLGSVLMLVAMVSMYVDAGTTDIALLMKHQFSSES 205 Query: 205 FSI---------QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 FS+ Q M++AFF SFA+K+PM+P HTWLP+AHVQAPTAGSV LA I+LKMG Sbjct: 206 FSLLGVHVLGGAQTLMFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMG 265 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 GYG +RF LP+FP+ ++ +I +LS IA++Y SLV+MVQ D+KKLIAYSS+AHMG+VT Sbjct: 266 GYGFLRFSLPMFPVGAEVMTDLILWLSAIAVVYTSLVAMVQEDMKKLIAYSSVAHMGFVT 325 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 +GIF+ + GV+GA+FQMLSHG +S+ALF CVGVIYDR+HTRDI AYGGLV+ MP YA V Sbjct: 326 MGIFAANQQGVDGAIFQMLSHGFISAALFLCVGVIYDRMHTRDIDAYGGLVNRMPTYARV 385 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 M+FTMAN+GLPGTSGFIGEFL +M FQ + VA +A+ GV+ SA Y+LWLYR+VVFG Sbjct: 386 FMLFTMANVGLPGTSGFIGEFLTLMGTFQKNTWVAAVAASGVIFSAGYALWLYRRVVFGD 445 Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 E ++ + D++ RER + P+ V+T+ G+YP + D +++I N+ Sbjct: 446 LIKESLKAITDMTSRERAIFAPLIVMTILLGVYPALVTDIIGPSTAALISNF 497 >gi|83951759|ref|ZP_00960491.1| NADH dehydrogenase subunit M [Roseovarius nubinhibens ISM] gi|83836765|gb|EAP76062.1| NADH dehydrogenase subunit M [Roseovarius nubinhibens ISM] Length = 518 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 254/505 (50%), Positives = 357/505 (70%), Gaps = 15/505 (2%) Query: 6 LSIVTFLPFLG--VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 L++ TF+P + + I +R+ VAL + + F+ S+ + + FD Q Sbjct: 5 LTMTTFIPLIAAAILAIFLRGEDEFAQRAAKWVALVATVLTFLVSIAILAQFDPANPGMQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 M+E W+ Y +GVDGISIL V+LTTF+ P I +SW ++ +EYMIAFLVLE+ Sbjct: 65 MVEEAPWL-MDIKYKMGVDGISILFVMLTTFMMPITIAASW-NVTTRVKEYMIAFLVLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++LD++LFY+FFEA LIPMF+IIG+WGG ERIYA++KFFLYTF GS+ ML A+V Sbjct: 123 LMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFLGSVLMLVAMV 182 Query: 184 VMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTWL 232 M + T+ I+ L + + FS+ Q +++AFF SFA+K+PM+P HTWL Sbjct: 183 AMFADAGTTDIVALMKHEFASESFSVLGIHVLGGMQTLLFLAFFASFAVKMPMWPVHTWL 242 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ + P+I ++S IAI+Y SLV Sbjct: 243 PDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVLTPLILWMSAIAIVYTSLV 302 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q D+KKLIAYSS+AHMGYVT+GIF+ + G++GA+FQM+SHG +S ALF CVGVIYD Sbjct: 303 ALAQQDMKKLIAYSSVAHMGYVTMGIFAANQQGIDGAIFQMISHGFISGALFLCVGVIYD 362 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+HTR+I AYGGLV+ MP YA++ ++FTMAN+GLPGTSGFIGEFL I+ VFQ + VA++ Sbjct: 363 RMHTREIDAYGGLVNRMPAYALIFLLFTMANVGLPGTSGFIGEFLTILGVFQVNTWVALV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+LSA Y+LWLYR+VV G E ++ + D++ RER + P+ V+T+ G+YP + Sbjct: 423 AATGVILSAGYALWLYRRVVMGELIKESLKSISDMTTRERAIFAPLVVMTLLLGVYPSLV 482 Query: 473 RDTFSVPLSSIIENYTLKTGYSDSV 497 D + ++I NY + +V Sbjct: 483 TDIIGPSVEALITNYDTAVSEAQAV 507 >gi|163741475|ref|ZP_02148866.1| NADH dehydrogenase subunit M [Phaeobacter gallaeciensis 2.10] gi|161385209|gb|EDQ09587.1| NADH dehydrogenase subunit M [Phaeobacter gallaeciensis 2.10] Length = 515 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 261/503 (51%), Positives = 357/503 (70%), Gaps = 15/503 (2%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSIVTF+P L ++ +R+ VAL +TI F+ SL ++ FD + FQ Sbjct: 5 LSIVTFIPALAAAILALFLRGEDEAAQRNAKSVALFATTITFLVSLGIYFQFDPSDTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI + Y +GVDGIS+L V+LTTF+ P IL+SW + +EYMIAFL+LE+ Sbjct: 65 FVEEAEWI-FGLKYKMGVDGISVLFVMLTTFVMPLTILASW-GVNTRVKEYMIAFLMLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++LD++LFY+FFEA LIPMF+IIG+WGG ERIYA++KFFLYTFFGS+ ML A+V Sbjct: 123 LMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFFGSVLMLVAMV 182 Query: 184 VMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTWL 232 M + T+ I L ++ S F + Q +++AFF SFA+K+PM+P HTWL Sbjct: 183 AMYADAGTTDIAQLLTHSFSAGSFDLLGIHVVGGMQTLLFLAFFASFAVKMPMWPVHTWL 242 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ + +I ++S IA++Y SLV Sbjct: 243 PDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILWMSAIAVVYTSLV 302 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++VQ+D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQMLSHG +S+ALF CVGVIYD Sbjct: 303 ALVQSDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISAALFLCVGVIYD 362 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+HTRDI AYGGLV MP YA+V M FTM N+GLPGTSGFIGEFL +M FQ + VA + Sbjct: 363 RMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTLMGTFQKNTWVAAV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+ SA Y+LWLYR+VVFG ++ +KD++ RER + P+ V+T+ G+YP + Sbjct: 423 AATGVIFSAGYALWLYRRVVFGDLIKGSLKTIKDMTARERFIFAPLVVMTILLGVYPALV 482 Query: 473 RDTFSVPLSSIIENYTLKTGYSD 495 D S ++I N+ +D Sbjct: 483 TDIISPSTEALIANFNQSLAAAD 505 >gi|163746217|ref|ZP_02153576.1| NADH dehydrogenase subunit M [Oceanibulbus indolifex HEL-45] gi|161380962|gb|EDQ05372.1| NADH dehydrogenase subunit M [Oceanibulbus indolifex HEL-45] Length = 520 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 258/514 (50%), Positives = 362/514 (70%), Gaps = 21/514 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVI---LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 M+ LSI+TF+P ++ L GR + + +A +T+ F+ SLFV FD Sbjct: 1 MDTHLLSIITFVPAFAALILAVFLRGDDAAAGRNAKW-LAFITTTVTFLISLFVLFEFDP 59 Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + FQ ++ W+ Y LGVDGISIL V+LTTF+ P I +SW +++ +EYMIA Sbjct: 60 SNTDFQFVDEADWL-LGLKYRLGVDGISILFVMLTTFMMPLVIAASW-NVEHRVKEYMIA 117 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL+LE++++G F++LD++LFY+FFEA LIPMF+IIG+WGG ERIYA++KFFLYTF GS+ Sbjct: 118 FLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFLGSVL 177 Query: 178 MLFAIVVMCWEKKTSSI----IDL----YAMSKFPF-------SIQYWMWIAFFCSFAIK 222 ML A+V M E T+ I I L + F +Q M++AFF SFA+K Sbjct: 178 MLVAMVAMFTEAGTTCIGGCEISLLTHNFGSDNFELLGIQVVGGMQTLMFLAFFASFAVK 237 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PM+P HTWLP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ ++ P+I ++S Sbjct: 238 MPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTPLILWMS 297 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 IAI+Y SLV++VQ D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQM+SHG +S A Sbjct: 298 AIAIVYTSLVALVQQDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMISHGFISGA 357 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF VGVIYDR+HTRDI AYGGLV+ MP YA+V M FTMAN+GLPGTSGF+GEFL +M+ Sbjct: 358 LFLSVGVIYDRMHTRDIDAYGGLVNRMPAYAMVFMFFTMANVGLPGTSGFVGEFLTLMAT 417 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 FQ + VA +A+ GV+ SA Y+LWLYR+VV G E ++ + D++ RE+ ++ P+ +T Sbjct: 418 FQVNTWVAAVATTGVIFSAAYALWLYRRVVMGDLIKESLKAITDMTAREKWIIAPLVAMT 477 Query: 463 VFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDS 496 + G+YP + D +++++ENY + +D+ Sbjct: 478 LILGVYPALVLDMIGPSVAALVENYDMALEAADT 511 >gi|254474527|ref|ZP_05087913.1| NADH dehydrogenase i, m subunit [Ruegeria sp. R11] gi|214028770|gb|EEB69605.1| NADH dehydrogenase i, m subunit [Ruegeria sp. R11] Length = 515 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 259/503 (51%), Positives = 360/503 (71%), Gaps = 15/503 (2%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSIVTF+P L ++ +R+ VAL +TI F+ SL ++ FD + FQ Sbjct: 5 LSIVTFIPALAAAILALFLRGEDEAAQRNAKYVALFATTITFLVSLGIYFEFDPANTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI + Y +GVDGIS+L V+LTTF+ P IL+SW ++ +EYMIAFL+LE+ Sbjct: 65 FVEEAEWI-FGLKYKMGVDGISVLFVMLTTFVMPLTILASWD-VKTRVKEYMIAFLLLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++LD++LFY+FFEA LIPMF+IIG+WGG+ RIYA++KFFLYTFFGS+ ML A++ Sbjct: 123 LMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFFGSVLMLIAMI 182 Query: 184 VMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTWL 232 M + T+ I L ++ S F + Q +++AFF SFA+K+PM+P HTWL Sbjct: 183 AMFADAGTTDIEALLTHSFSAGSFDVLGIHIVGGMQTLLFLAFFASFAVKMPMWPVHTWL 242 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ ++ ++ ++S IAI+Y SLV Sbjct: 243 PDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTDLVLWMSAIAIVYTSLV 302 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++VQ D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQMLSHG +S+ALF CVGVIYD Sbjct: 303 AIVQDDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISAALFLCVGVIYD 362 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+HTRDI AYGGLV MP YA+V M FTM N+GLPGTSGFIGEFL +M FQ + VA++ Sbjct: 363 RMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTLMGTFQKNTWVAMI 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+ SA Y+LWLYR+VVFG E ++ +KD++ RER + P+ ++T+ G+YP + Sbjct: 423 ATTGVIFSAGYALWLYRRVVFGDLIKESLKTIKDMTARERFIFAPLVIMTILLGVYPAVV 482 Query: 473 RDTFSVPLSSIIENYTLKTGYSD 495 D S ++I N+ +D Sbjct: 483 TDIISPSTEALIANFNQSLAAAD 505 >gi|163738814|ref|ZP_02146228.1| NADH dehydrogenase subunit M [Phaeobacter gallaeciensis BS107] gi|161388142|gb|EDQ12497.1| NADH dehydrogenase subunit M [Phaeobacter gallaeciensis BS107] Length = 515 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 261/503 (51%), Positives = 357/503 (70%), Gaps = 15/503 (2%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSIVTF+P L ++ +R+ VAL +TI F+ SL ++ FD + FQ Sbjct: 5 LSIVTFIPALAAAILALFLRGEDEAAQRNAKSVALFATTITFLVSLGIYFQFDPSDTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI + Y +GVDGIS+L V+LTTF+ P IL+SW + +EYMIAFL+LE+ Sbjct: 65 FVEEAEWI-FGLKYKMGVDGISVLFVMLTTFVMPLTILASW-GVNTRVKEYMIAFLMLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++LD++LFY+FFEA LIPMF+IIG+WGG ERIYA++KFFLYTFFGS+ ML A+V Sbjct: 123 LMLGVFIALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFFGSVLMLVAMV 182 Query: 184 VMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTWL 232 M + T+ I L ++ S F + Q +++AFF SFA+K+PM+P HTWL Sbjct: 183 AMYADAGTTDIAQLLTHSFSAGSFDLLGIHVVGGMQTLLFLAFFASFAVKMPMWPVHTWL 242 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ + +I ++S IA++Y SLV Sbjct: 243 PDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILWMSAIAVVYTSLV 302 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++VQ+D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQMLSHG +S+ALF CVGVIYD Sbjct: 303 ALVQSDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISAALFLCVGVIYD 362 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+HTRDI AYGGLV MP YA+V M FTM N+GLPGTSGFIGEFL +M FQ + VA + Sbjct: 363 RMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTLMGTFQKNTWVAAV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+ SA Y+LWLYR+VVFG ++ +KD++ RER + P+ V+T+ G+YP + Sbjct: 423 AATGVIFSAGYALWLYRRVVFGDLIKGSLKTIKDMTARERFIFAPLVVMTILLGVYPALV 482 Query: 473 RDTFSVPLSSIIENYTLKTGYSD 495 D S ++I N+ +D Sbjct: 483 TDIISPSTEALIANFNESLAAAD 505 >gi|266663|sp|P29925|NQO13_PARDE RecName: Full=NADH-quinone oxidoreductase chain 13; AltName: Full=NADH dehydrogenase I, chain 13; AltName: Full=NDH-1, chain 13 gi|150615|gb|AAA25599.1| NADH dehydrogenase [Paracoccus denitrificans] Length = 513 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 258/497 (51%), Positives = 353/497 (71%), Gaps = 17/497 (3%) Query: 6 LSIVTFLPFLG--VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSI+TFLP + + + R+ +AL +T F+ SLFV FD + FQ Sbjct: 5 LSIITFLPIVAAIIMALFLRGQDEAAARNAKWLALLTTTATFVISLFVLFRFDPANTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E + WI C Y +GVDGIS+L V+LTTF+ P ILS+W+ +Q+ +EYMIAFLVLE Sbjct: 65 FVEDHAWIMGVC-YKMGVDGISVLFVLLTTFMMPLTILSTWQ-VQDKVKEYMIAFLVLEG 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F +LD++LFY+FFEA LIPMF+IIG+WGG +RIYA++KFFLYTF GS+ ML A++ Sbjct: 123 LMIGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMI 182 Query: 184 VMCWEKKTSSIIDLYAMSKFPFS------------IQYWMWIAFFCSFAIKIPMFPFHTW 231 M T+ I L FP +Q +++AFF SFA+K+PM+P HTW Sbjct: 183 AMYRMAGTTDIPTLLTF-DFPSENFRLLGMTVVGGMQMLLFLAFFASFAVKMPMWPVHTW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA ++LKMGGYG +RF LP+FP+AS P +F+LS IAI+Y SL Sbjct: 242 LPDAHVQAPTAGSVLLAAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSL 301 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++ Q+D+KK+IAYSS+AHMGYVT+G+F+ + GV+GA+FQMLSHG +S ALF CVGVIY Sbjct: 302 VALAQSDMKKVIAYSSVAHMGYVTMGVFAANQIGVDGAIFQMLSHGFISGALFLCVGVIY 361 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTR+I AYGGLV+ MP YA V M FTMAN+GLPGTSGF+GEFL +M VF+ VA+ Sbjct: 362 DRMHTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGEFLTLMGVFRVDTWVAL 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A+ GV+LSA Y+LWLYR+V G E ++ + D++ RER + P+ +T+ G+YP Sbjct: 422 VATSGVILSAAYALWLYRRVTLGQLIKESLKSITDMTPRERWVFIPLIAMTLILGVYPRL 481 Query: 472 IRDTFSVPLSSIIENYT 488 + D +++++++Y Sbjct: 482 VTDVTGPAVAALVQDYN 498 >gi|197105255|ref|YP_002130632.1| NADH dehydrogenase I, M subunit [Phenylobacterium zucineum HLK1] gi|196478675|gb|ACG78203.1| NADH dehydrogenase I, M subunit [Phenylobacterium zucineum HLK1] Length = 494 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 261/495 (52%), Positives = 346/495 (69%), Gaps = 7/495 (1%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLG-----CGRRSFFGVALGISTINFIFSLFVWSVFDK 57 +P LS++T+ P +GV IL G + +A + F S+ + FD Sbjct: 1 MPLLSLITYAPLVGVAGILALRLFGRPDDAKAVEASKWIAFVTTLATFALSVLLVVQFDP 60 Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 FQ +E W SY +GVDGIS+L V+LT FL P CI +SW+SI++ EYMIA Sbjct: 61 ANPGFQFVEEVPWFASL-SYRMGVDGISVLFVLLTAFLMPLCIAASWRSIEKRVPEYMIA 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FLVLE++VIG F +LD++LFYIFFE L+PMF+IIG+WGG+ R+YAA+KFFLYT GS+ Sbjct: 120 FLVLETLVIGVFCALDLVLFYIFFEFGLVPMFLIIGIWGGARRVYAAFKFFLYTLLGSVL 179 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML AI+ M TSSI +L A P +Q W+W+AFF SFA+K+PM+P HTWLP+AHV Sbjct: 180 MLAAILFMIASTGTSSIPELMAYDFAP-GVQTWLWLAFFASFAVKMPMWPVHTWLPDAHV 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAGI+LKMGGYG +RF LP+FP AS FAP++F LS+IAI+Y SLV+ QT Sbjct: 239 EAPTAGSVILAGILLKMGGYGFMRFSLPMFPNASDLFAPLVFALSVIAIVYTSLVAFRQT 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIKKLIAYSS+AHMG+VT+GIFSG G +GA+FQM+SHG++S ALF CVGV+YDR+HTR Sbjct: 299 DIKKLIAYSSVAHMGFVTMGIFSGNAQGEQGALFQMISHGVISGALFLCVGVVYDRMHTR 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I YGGLV+ MP YA V M+FTM N+GLPGTSGF+GE L + V+Q S A++A+ GV Sbjct: 359 EIAFYGGLVNRMPWYAAVFMLFTMGNVGLPGTSGFVGEILTMTGVYQASTWTALVAATGV 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +LSA+Y+L LYR+V+FG K+ + DL RE + P+ V T++ G+ P + D + Sbjct: 419 ILSAMYALTLYRRVIFGELTNPKLAAITDLDWREVAIFAPLIVSTLYLGVQPNVVFDLTA 478 Query: 478 VPLSSIIENYTLKTG 492 + ++ Y G Sbjct: 479 ASVDQLVAAYQAAVG 493 >gi|89053686|ref|YP_509137.1| NADH dehydrogenase subunit M [Jannaschia sp. CCS1] gi|88863235|gb|ABD54112.1| NADH dehydrogenase subunit M [Jannaschia sp. CCS1] Length = 514 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 260/499 (52%), Positives = 357/499 (71%), Gaps = 15/499 (3%) Query: 5 FLSIVTFLPFLG--VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 +SIVTFLP + + + + + +A + F+ S+F+ FD + F Sbjct: 4 LISIVTFLPLVAAIIMAVFLRGEDEAAQLNAKRLAFAATAATFLVSIFLLVQFDASNTDF 63 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q++E W+ + +Y +GVDGISIL V+LTTFL P I + W S++ +EYMIA L+LE Sbjct: 64 QLVEEAPWL-FGLTYKVGVDGISILFVMLTTFLMPITIAACW-SVKTRVKEYMIALLILE 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +++IG F++LDM+LFY+FFEA LIPMF+IIG+WGG+ RIYA++KFFLYTF GS+ ML A+ Sbjct: 122 TLMIGVFVALDMVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLMLVAM 181 Query: 183 VVMCWEKKTSSIIDL----YAMSKFPFS-------IQYWMWIAFFCSFAIKIPMFPFHTW 231 V M + T+ I L + F + +Q +++AFF SFA+K+PM+P HTW Sbjct: 182 VAMYVDAGTTDIPTLLNHNFGTETFTVAGFTVVGGLQTMLFLAFFASFAVKMPMWPVHTW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+AS FAP+I +LS+IAIIY SL Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVASDIFAPLILWLSVIAIIYTSL 301 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V+MVQ D+KKLIAYSS+AHMG+VT+GIF+ ++GV+GA+FQM+SHG +S ALF CVGVIY Sbjct: 302 VAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQNGVDGAIFQMISHGFISGALFLCVGVIY 361 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTRDI AYGGLV MP YA + M+FTMAN+GLPGTSGF+GEFL ++ VFQ + + + Sbjct: 362 DRMHTRDIDAYGGLVVRMPAYAAIFMLFTMANVGLPGTSGFVGEFLTLIGVFQVNTWIGL 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 LA GV+LSA Y+LWLYR+VVFG E ++ + D++ RER + P+ V+T+ G+YP Sbjct: 422 LACTGVILSASYALWLYRRVVFGDLIKESLKSITDMTRRERAIFAPLVVMTILLGVYPSL 481 Query: 472 IRDTFSVPLSSIIENYTLK 490 + D + +++ NY L Sbjct: 482 VTDIIGPSVEALVTNYELA 500 >gi|126729573|ref|ZP_01745386.1| NADH dehydrogenase subunit M [Sagittula stellata E-37] gi|126709692|gb|EBA08745.1| NADH dehydrogenase subunit M [Sagittula stellata E-37] Length = 522 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 266/503 (52%), Positives = 356/503 (70%), Gaps = 21/503 (4%) Query: 5 FLSIVTFLPFLGVF---VILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 LSIVTFLP L V L S R + + +AL +T FI SLF+ + FD + Sbjct: 4 LLSIVTFLPALAALILAVFLRGSDAAAQRNAKY-LALIATTATFIISLFILAQFDPSNTG 62 Query: 62 FQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 FQM+E W+ SY +GVDGIS+L V+LTTF+ P I +SW ++ EYMIAFL+L Sbjct: 63 FQMVEEGEWL-MGLSYRMGVDGISVLFVMLTTFMMPLVIWASW-NVTHRVTEYMIAFLML 120 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 E++++G F++LD++LFY+FFEA LIPMF+IIG+WGG ERIYA++KFFLYTF GS+ ML A Sbjct: 121 ETLMLGVFMALDLVLFYVFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFLGSVLMLVA 180 Query: 182 IVVMCWEKKTSSI--------IDLYAMSKFPF-------SIQYWMWIAFFCSFAIKIPMF 226 +V M + T+ I +A F +Q +++AFF SFA+K+PM+ Sbjct: 181 MVAMYADAGTTCIGACDVSLLTHQFASDDFSVLGITVVGGLQTMLFLAFFASFAVKMPMW 240 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P HTWLP AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S A +F LS++AI Sbjct: 241 PVHTWLPEAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMANFVFTLSVVAI 300 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 IY SLV++VQ D+KKLIAYSS+AHMGYVT+GIF+ + GV+GA+FQM+SHG +S ALF C Sbjct: 301 IYTSLVALVQEDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMISHGFISGALFLC 360 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 VGVIYDR+HTR+I AYGGLV+ MP YA++ M+FTMAN+GLPGTSGFIGEFL + VFQ + Sbjct: 361 VGVIYDRMHTREIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGFIGEFLTLAGVFQVN 420 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 VA A+ GV+LSA Y+LWLYR+VV G E ++ +KD++ RE+ + P+ +T++ G Sbjct: 421 TWVAAGAATGVILSAAYALWLYRRVVMGDLIKESLKTIKDMTAREKAIFAPLVFMTIWMG 480 Query: 467 IYPVPIRDTFSVPLSSIIENYTL 489 +YP PI D + +++ NY + Sbjct: 481 VYPAPILDRIGPSVEALVSNYDM 503 >gi|126740393|ref|ZP_01756081.1| NADH dehydrogenase subunit M [Roseobacter sp. SK209-2-6] gi|126718529|gb|EBA15243.1| NADH dehydrogenase subunit M [Roseobacter sp. SK209-2-6] Length = 515 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 259/507 (51%), Positives = 358/507 (70%), Gaps = 21/507 (4%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSIVTF+P L V+ +R+ +AL ++ F+ SL +++ FD + FQ Sbjct: 5 LSIVTFVPALAAAVMALLMRGEDAAAQRNAKWLALIATSFTFLLSLGIYAQFDPNDTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E Y WI + Y +GVDGIS+L V+LTTF+ P IL+SW ++ +EYMIAFL+LE+ Sbjct: 65 FVENYEWI-FGLQYKMGVDGISVLFVLLTTFVMPLTILASW-NVTTRVKEYMIAFLMLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++LD++LFY+FFEA LIPMF+IIG+WGG ERIYA++KFFLYTF GS+ ML A+V Sbjct: 123 LMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFLGSVLMLVAMV 182 Query: 184 VMCWEKKTSSIIDLYAMSKFPFS--------------IQYWMWIAFFCSFAIKIPMFPFH 229 M + T+ D+ A+ K FS +Q M++AFF SFA+K+PM+P H Sbjct: 183 AMYADAGTT---DIEALLKHSFSAGSFDVLGIHVVGGMQTLMFLAFFASFAVKMPMWPVH 239 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ + +I ++S IA++Y Sbjct: 240 TWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDLILWMSAIAVVYT 299 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 SLV+MVQ D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQMLSHG +S+ALF CVGV Sbjct: 300 SLVAMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISAALFLCVGV 359 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 IYDR+HTRDI AYGGLV MP YA+V M FTM N+GLPGTSGF+GEFL +M FQ + V Sbjct: 360 IYDRMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFVGEFLTLMGTFQKNTWV 419 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A +A+ GV+ SA Y+LWLYR+VVFG ++ ++D+ RER + P+ +T+ G+YP Sbjct: 420 AAVAASGVIFSAGYALWLYRRVVFGDLIKGSLKTIQDMDARERFIFAPLVGMTILLGVYP 479 Query: 470 VPIRDTFSVPLSSIIENYTLKTGYSDS 496 + D +++IEN+ +D+ Sbjct: 480 SLVTDIIGPSTAALIENFNHSLASADT 506 >gi|254437407|ref|ZP_05050901.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Octadecabacter antarcticus 307] gi|198252853|gb|EDY77167.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Octadecabacter antarcticus 307] Length = 513 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 254/497 (51%), Positives = 357/497 (71%), Gaps = 21/497 (4%) Query: 6 LSIVTFLPFL--GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSI TF+P + G+ + +R+ +A+ +T+ F+ SLF+ FD + FQ Sbjct: 5 LSITTFIPAIAAGILAVFLRDDNEAAQRNAKWLAMAATTMTFLVSLFILFGFDAQDTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI +Y +GVDGISIL V+LTTFL P I S W ++ +EYMIAFL+LE+ Sbjct: 65 FVEERTWI-MGLNYKMGVDGISILFVMLTTFLMPIVIASCW-TVNTRVKEYMIAFLLLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++LD++LFY+FFEA LIPMF+IIG+WGG +RIYA++KFFLYTF GS+ ML A+V Sbjct: 123 LMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMV 182 Query: 184 VMCWEKKTSSIIDLYAMSKFPFS--------------IQYWMWIAFFCSFAIKIPMFPFH 229 M T+ D+ ++ FPF+ +Q +W+AFF SFA+K+PM+P H Sbjct: 183 GMFSAAGTT---DIPSLMGFPFNTDDFAILGIQIVGGMQTLLWLAFFASFAVKMPMWPVH 239 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S AP++ ++S IAI+Y Sbjct: 240 TWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMAPLVLWMSAIAIVYT 299 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 SLV++VQ D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQM+SHG +S ALF CVGV Sbjct: 300 SLVALVQEDMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFISGALFLCVGV 359 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 IYDR+HTR+I AYGGLV+ MP YA++ M FTMAN+GLPGTSGF+GEFL ++ VFQ + V Sbjct: 360 IYDRMHTREIDAYGGLVNRMPAYAMIFMFFTMANVGLPGTSGFVGEFLTLVGVFQVNTWV 419 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A +A+ GV+LSA Y+LWLYR+VV G E ++ + D++ RER + P+ V+T+ G+YP Sbjct: 420 AAVATSGVILSAAYALWLYRRVVMGDLIKESLKTITDMTTRERWIFTPLVVMTLLLGVYP 479 Query: 470 VPIRDTFSVPLSSIIEN 486 + D ++++++ Sbjct: 480 ALVTDIIGPSVAALVDQ 496 >gi|119384964|ref|YP_916020.1| NADH dehydrogenase subunit M [Paracoccus denitrificans PD1222] gi|119374731|gb|ABL70324.1| NADH dehydrogenase subunit M [Paracoccus denitrificans PD1222] Length = 513 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 257/497 (51%), Positives = 352/497 (70%), Gaps = 17/497 (3%) Query: 6 LSIVTFLPFLG--VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSI+TFLP + + + R+ +AL +T F+ SLFV FD + FQ Sbjct: 5 LSIITFLPIVAAIIMALFLRGQDEAAARNAKWLALLTTTATFVISLFVLFRFDPANTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E + WI Y +GVDGIS+L V+LTTF+ P ILS+W+ +Q+ +EYMIAFLVLE Sbjct: 65 FVEDHAWI-MGLRYKMGVDGISVLFVLLTTFMMPLTILSTWQ-VQDKVKEYMIAFLVLEG 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F +LD++LFY+FFEA LIPMF+IIG+WGG +RIYA++KFFLYTF GS+ ML A++ Sbjct: 123 LMIGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMI 182 Query: 184 VMCWEKKTSSIIDLYAMSKFPFS------------IQYWMWIAFFCSFAIKIPMFPFHTW 231 M T+ I L FP +Q +++AFF SFA+K+PM+P HTW Sbjct: 183 AMYRMAGTTDIPTLLTFD-FPSENFRLLGMTVVGGMQMLLFLAFFASFAVKMPMWPVHTW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA ++LKMGGYG +RF LP+FP+AS P +F+LS IAI+Y SL Sbjct: 242 LPDAHVQAPTAGSVLLAAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSL 301 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++ Q+D+KK+IAYSS+AHMGYVT+G+F+ + GV+GA+FQMLSHG +S ALF CVGVIY Sbjct: 302 VALAQSDMKKVIAYSSVAHMGYVTMGVFAANQIGVDGAIFQMLSHGFISGALFLCVGVIY 361 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTR+I AYGGLV+ MP YA V M FTMAN+GLPGTSGF+GEFL +M VF+ VA+ Sbjct: 362 DRMHTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGEFLTLMGVFRVDTWVAL 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A+ GV+LSA Y+LWLYR+V G E ++ + D++ RER + P+ +T+ G+YP Sbjct: 422 VATSGVILSAAYALWLYRRVTLGQLIKESLKSITDMTPRERWVFIPLIAMTLILGVYPRL 481 Query: 472 IRDTFSVPLSSIIENYT 488 + D +++++++Y Sbjct: 482 VTDVTGPAVAALVQDYN 498 >gi|254450084|ref|ZP_05063521.1| NADH-quinone oxidoreductase chain m [Octadecabacter antarcticus 238] gi|198264490|gb|EDY88760.1| NADH-quinone oxidoreductase chain m [Octadecabacter antarcticus 238] Length = 513 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 256/510 (50%), Positives = 361/510 (70%), Gaps = 22/510 (4%) Query: 6 LSIVTFLPFL--GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSI TF+P + G+ + +R+ +A+ + + F+ SLF+ F+ + FQ Sbjct: 5 LSITTFIPAIAAGILALFLRGDDEAAQRNAKWLAMAATAMTFLVSLFILIGFNPQDTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI +Y +GVDGISIL V+LTTFL P I S W S+ +EYMIAFL+LE+ Sbjct: 65 FVEERTWI-MGLNYKMGVDGISILFVMLTTFLMPIVIASCW-SVNTRVKEYMIAFLLLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++LD++LFY+FFEA LIPMF+IIG+WGG+ RIYA++KFFLYTF GS+ ML A+V Sbjct: 123 LMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLMLVAMV 182 Query: 184 VMCWEKKTSSIIDLYAMSKFPFS--------------IQYWMWIAFFCSFAIKIPMFPFH 229 M T+ D+ ++ FPF +Q +W+AFF SFA+K+PM+PFH Sbjct: 183 GMYSAAGTT---DIPSLMGFPFGTDDFAILGIQIVGGMQTLLWLAFFASFAVKMPMWPFH 239 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S AP++ ++S IAI+Y Sbjct: 240 TWLPDAHVQAPTAGSVVLASILLKMGGYGFLRFSLPMFPVGSDVMAPLVLWMSAIAIVYT 299 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 SLV++VQ D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQM+SHG ++ ALF CVGV Sbjct: 300 SLVALVQEDMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFIAGALFLCVGV 359 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 IYDR+HTRDI AYGGLV+ MP YA++ M FTMAN+GLPGTSGF+GEFL ++ VFQ + V Sbjct: 360 IYDRMHTRDIDAYGGLVNRMPAYAMIFMFFTMANVGLPGTSGFVGEFLTLVGVFQVNTWV 419 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A +A+ GV+LSA Y+LWLYR+VV G E ++ + D++ RER + P+ ++T+ GIYP Sbjct: 420 AAVATSGVILSAAYALWLYRRVVMGDLIKESLKTITDMTTRERWIFTPLVIMTLLLGIYP 479 Query: 470 VPIRDTFSVPLSS-IIENYTLKTGYSDSVK 498 + D +++ +++ T + Y + + Sbjct: 480 ALVTDIIGPSVTALVVQVETAQAAYDAATQ 509 >gi|254465739|ref|ZP_05079150.1| NADH dehydrogenase i, m subunit [Rhodobacterales bacterium Y4I] gi|206686647|gb|EDZ47129.1| NADH dehydrogenase i, m subunit [Rhodobacterales bacterium Y4I] Length = 515 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 261/504 (51%), Positives = 354/504 (70%), Gaps = 15/504 (2%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSIVTF+P L ++ +R+ VAL +TI F+ SL ++ FD + FQ Sbjct: 5 LSIVTFIPALAAAILALFLRGEDKAAQRNAKFVALFATTITFLVSLGIYFEFDPNNTGFQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI + Y +GVDGIS+L V+LTTF+ P IL+SW ++ +EYM+AFL+LE+ Sbjct: 65 FVEDAEWI-FGLKYKMGVDGISVLFVMLTTFIMPLTILASW-NVTTRVKEYMVAFLLLET 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++LD++LFY+FFEA LIPMF+IIG+WGG ERIYA++KFFLYTFFGS+ ML A+V Sbjct: 123 LMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYASFKFFLYTFFGSVLMLVAMV 182 Query: 184 VMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTWL 232 M + T+ I L ++ S F + Q M++AFF SFA+K+PM+P HTWL Sbjct: 183 FMYVDAGTTDIETLLTHSFSAASFDVLGIHIVGGAQTLMFLAFFASFAVKMPMWPVHTWL 242 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ + V+ ++S IA++Y SLV Sbjct: 243 PDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGADVMTDVVLWMSAIAVVYTSLV 302 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 +MVQ D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQMLSHG +S+ALF CVGVIYD Sbjct: 303 AMVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGIDGAIFQMLSHGFISAALFLCVGVIYD 362 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+HTRDI AYGGLV MP YA+V M FTM N+GLPGTSGFIGEFL +M FQ + V + Sbjct: 363 RMHTRDIDAYGGLVIRMPAYALVFMFFTMGNVGLPGTSGFIGEFLTLMGTFQKNTWVTAV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+ SA Y+LWLYR+VVFG + +KD+S RER + P+ +T+ GIYP + Sbjct: 423 AATGVIFSAGYALWLYRRVVFGDLIKGSLMGIKDMSARERFVFAPLIAMTLILGIYPAVV 482 Query: 473 RDTFSVPLSSIIENYTLKTGYSDS 496 D ++I N+ +D+ Sbjct: 483 TDIIGPSTEALIANFNQSLAAADT 506 >gi|294677073|ref|YP_003577688.1| NADH-quinone oxidoreductase subunit M [Rhodobacter capsulatus SB 1003] gi|1709413|sp|P50974|NUOM_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit M; AltName: Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1 subunit M gi|3282578|gb|AAC25004.1| NUOM [Rhodobacter capsulatus] gi|294475893|gb|ADE85281.1| NADH-quinone oxidoreductase, M subunit [Rhodobacter capsulatus SB 1003] gi|1586527|prf||2204231H NADH ubiquinone oxidoreductase Length = 512 Score = 511 bits (1316), Expect = e-143, Method: Compositional matrix adjust. Identities = 250/477 (52%), Positives = 340/477 (71%), Gaps = 14/477 (2%) Query: 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISIL 87 R+ VAL + + F+ SL + + FD Q +E WI Y LGVDGISIL Sbjct: 29 AADRNAKWVALTATVVTFLVSLLLLAGFDPANPGMQFVEDRAWI-MGLHYKLGVDGISIL 87 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 V+LTTFL P I S+W ++ +EYMIAFLVLE+++IG F++LD++LFY+FFEA LIP Sbjct: 88 FVMLTTFLMPLTIASAWH-VETRVKEYMIAFLVLEALMIGVFVALDLVLFYLFFEAGLIP 146 Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL----YAMSKF 203 MF+IIG+WGG ERIYAA+KFFLYTF GS+ ML A+V M T+ I+ L + + Sbjct: 147 MFLIIGIWGGKERIYAAFKFFLYTFLGSVLMLVAMVAMYMMAGTTDIVTLMSFDFPHADL 206 Query: 204 PF--------SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 PF +Q +++AFF SFA+K+PM+P HTWLP+AHVQAPTAGSV LA ++LKMG Sbjct: 207 PFLGWWTLTGGVQTLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVVLAAVLLKMG 266 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 GYG +RF LP+FP+ ++ +F LS +AI+Y SLV++ Q D+KKLIAYSS+AHMGYVT Sbjct: 267 GYGFLRFSLPMFPVGAETMTTFVFILSAVAIVYTSLVALAQEDMKKLIAYSSVAHMGYVT 326 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 +GIF+ + GV+GA+FQMLSHG +S ALF CVGVIYDR+HTR+I AYGGLV+ MP YA++ Sbjct: 327 MGIFAANQQGVDGAIFQMLSHGFISGALFLCVGVIYDRMHTREIAAYGGLVNRMPAYALI 386 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 M FTMAN+GLPGTSGF+GEFL ++ +FQ + VA+ A+ GV+LSA Y+LWLYR+VVFG Sbjct: 387 FMFFTMANVGLPGTSGFVGEFLTLLGIFQVNTWVALFATSGVILSAAYALWLYRRVVFGE 446 Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTG 492 E ++ + D++ RE+ + P+ +T+ G+YP + D ++ +++NY G Sbjct: 447 LVKESLKTISDMTTREKAIFAPLVAMTLLLGVYPSLVTDLIGPSVAHLVQNYHADLG 503 >gi|16126181|ref|NP_420745.1| NADH dehydrogenase subunit M [Caulobacter crescentus CB15] gi|13423395|gb|AAK23913.1| NADH dehydrogenase I, M subunit [Caulobacter crescentus CB15] Length = 494 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 260/492 (52%), Positives = 348/492 (70%), Gaps = 6/492 (1%) Query: 5 FLSIVTFLPFLGVFVILFSSYL-GCGRRS---FFGVALGISTINFIFSLFVWSVFDKGRS 60 LS+ TF P GV VIL + L G G ++ +AL + + F S+ + FD Sbjct: 4 LLSLTTFAPLAGVAVILAARALHGAGEKTDTLAKWIALVTTLVTFGLSIVLTVQFDPKNP 63 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ +E W Y +GVDGIS+L V+LT FL P CI++SWKS+++ EY+IAFLV Sbjct: 64 GFQFVEDIAWFAGL-HYRMGVDGISVLFVLLTAFLLPICIVASWKSVEKRVVEYLIAFLV 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE++VIG F +LD++LFY+FFE L+PMF+IIG+WGG RIYAAYKFFLYT GS+ ML Sbjct: 123 LETLVIGVFCALDIVLFYLFFEGGLVPMFLIIGIWGGKRRIYAAYKFFLYTLLGSVLMLA 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M TSSI +L KF +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AILAMIGISGTSSIPELMTF-KFAPWLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LKMGGYG +RF LP+FP AS+ F P++F LS IAI+Y SLV+ QTDIK Sbjct: 242 TAGSVILAGILLKMGGYGFMRFSLPMFPNASEMFQPLVFALSAIAIVYTSLVAFRQTDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMG+VT+GIFSG +G +GA+FQMLSHG++S ALF CVGV+YDR+HTR+I Sbjct: 302 KLIAYSSVAHMGFVTMGIFSGNAAGEQGALFQMLSHGIISGALFLCVGVVYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGGL + MP YA V M+FTM N+GLPGTSGF+GE L + V++ S A++++ GV+LS Sbjct: 362 FYGGLTNRMPMYAAVFMLFTMGNVGLPGTSGFVGEILTMTGVYKASTWTAIVSALGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A+Y+L LYR+V+FG ++ + DL RE + P+ V T+ GIYP + + + + Sbjct: 422 AMYALTLYRRVMFGEITNPQLATITDLDKREILIFAPLIVSTLVLGIYPNLVFNLTATSV 481 Query: 481 SSIIENYTLKTG 492 +++ + G Sbjct: 482 DALVGAWRAAVG 493 >gi|221234953|ref|YP_002517389.1| NADH dehydrogenase subunit M [Caulobacter crescentus NA1000] gi|220964125|gb|ACL95481.1| NADH-quinone oxidoreductase chain M [Caulobacter crescentus NA1000] Length = 500 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 260/492 (52%), Positives = 348/492 (70%), Gaps = 6/492 (1%) Query: 5 FLSIVTFLPFLGVFVILFSSYL-GCGRRS---FFGVALGISTINFIFSLFVWSVFDKGRS 60 LS+ TF P GV VIL + L G G ++ +AL + + F S+ + FD Sbjct: 10 LLSLTTFAPLAGVAVILAARALHGAGEKTDTLAKWIALVTTLVTFGLSIVLTVQFDPKNP 69 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ +E W Y +GVDGIS+L V+LT FL P CI++SWKS+++ EY+IAFLV Sbjct: 70 GFQFVEDIAWFAGL-HYRMGVDGISVLFVLLTAFLLPICIVASWKSVEKRVVEYLIAFLV 128 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE++VIG F +LD++LFY+FFE L+PMF+IIG+WGG RIYAAYKFFLYT GS+ ML Sbjct: 129 LETLVIGVFCALDIVLFYLFFEGGLVPMFLIIGIWGGKRRIYAAYKFFLYTLLGSVLMLA 188 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M TSSI +L KF +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 189 AILAMIGISGTSSIPELMTF-KFAPWLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 247 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LKMGGYG +RF LP+FP AS+ F P++F LS IAI+Y SLV+ QTDIK Sbjct: 248 TAGSVILAGILLKMGGYGFMRFSLPMFPNASEMFQPLVFALSAIAIVYTSLVAFRQTDIK 307 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMG+VT+GIFSG +G +GA+FQMLSHG++S ALF CVGV+YDR+HTR+I Sbjct: 308 KLIAYSSVAHMGFVTMGIFSGNAAGEQGALFQMLSHGIISGALFLCVGVVYDRMHTREIA 367 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGGL + MP YA V M+FTM N+GLPGTSGF+GE L + V++ S A++++ GV+LS Sbjct: 368 FYGGLTNRMPMYAAVFMLFTMGNVGLPGTSGFVGEILTMTGVYKASTWTAIVSALGVILS 427 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A+Y+L LYR+V+FG ++ + DL RE + P+ V T+ GIYP + + + + Sbjct: 428 AMYALTLYRRVMFGEITNPQLATITDLDKREILIFAPLIVSTLVLGIYPNLVFNLTATSV 487 Query: 481 SSIIENYTLKTG 492 +++ + G Sbjct: 488 DALVGAWRAAVG 499 >gi|329889343|ref|ZP_08267686.1| NADH-quinone oxidoreductase subunit M [Brevundimonas diminuta ATCC 11568] gi|328844644|gb|EGF94208.1| NADH-quinone oxidoreductase subunit M [Brevundimonas diminuta ATCC 11568] Length = 501 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 260/492 (52%), Positives = 347/492 (70%), Gaps = 7/492 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFG-----VALGISTINFIFSLFVWSVFDKGRS 60 LSIVTFLP LG IL + L G + +AL + + S+ + + FD Sbjct: 11 LSIVTFLPLLGAAAILVARLLNKGGQDAAAPAARWIALITTMVVLAVSVLLVAQFDPSNP 70 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 ++Q +E Y W YHLGVDGISIL V+LT FL P CI++SWKSI+ EYMIAFL+ Sbjct: 71 AYQFVENYAWFAG-AGYHLGVDGISILFVLLTAFLLPICIVASWKSIETRVVEYMIAFLI 129 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+MVIG F SLD+ LFYIFFE +L+PM++IIG+WGG+ RIYAAYKFFLYT GS+ ML Sbjct: 130 LETMVIGVFTSLDLFLFYIFFEGTLVPMYLIIGIWGGANRIYAAYKFFLYTLLGSVLMLL 189 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ M T+SI +L + P ++Q +W+AFF SFA+K+PM+P HTWLP+AHVQAP Sbjct: 190 AMLWMAHTTGTTSIPELKQYAFDP-AVQPLLWLAFFASFAVKMPMWPVHTWLPDAHVQAP 248 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG I F +P+FPLASQ F P++ LS+IA++Y SLV+ QTDIK Sbjct: 249 TAGSVILAGILLKLGGYGFILFNIPMFPLASQMFTPLVLTLSVIAVVYTSLVAFRQTDIK 308 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMG+VT+GIF+G +GV+GA+FQMLSHGL+S ALF CVGV+YDR+HTR+I Sbjct: 309 KLIAYSSVAHMGFVTMGIFAGNDTGVQGAVFQMLSHGLISGALFLCVGVVYDRMHTREIA 368 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGGL MP YA + ++FTMAN+GLPGTSGFIGE L + +Q S A++A+ GV+ S Sbjct: 369 FYGGLTARMPWYAAIFLMFTMANVGLPGTSGFIGEVLTMTGAYQVSTWAALIAASGVIFS 428 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A+Y+L L+R V++G ++ + D+ RE + P+ V T++ G+YP + D + Sbjct: 429 AVYALTLFRNVMYGPITNPALESITDIDKRELLIFVPLIVGTIWLGLYPNAVLDYTGPTV 488 Query: 481 SSIIENYTLKTG 492 ++ Y G Sbjct: 489 EALTSAYRAAIG 500 >gi|295689612|ref|YP_003593305.1| proton-translocating NADH-quinone oxidoreductase subunit M [Caulobacter segnis ATCC 21756] gi|295431515|gb|ADG10687.1| proton-translocating NADH-quinone oxidoreductase, chain M [Caulobacter segnis ATCC 21756] Length = 494 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 255/468 (54%), Positives = 342/468 (73%), Gaps = 6/468 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYL-GCGRRSFF---GVALGISTINFIFSLFVWSVFDKGRSS 61 LS+ TF P +GV VIL + L G G ++ +AL + + F S+ + FD Sbjct: 5 LSLTTFAPIVGVAVILAARALHGAGEKTDVLAKWIALVTTLVTFGLSIVLTVQFDPKNPG 64 Query: 62 FQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 FQ +E + W Y +GVDGIS+L V+LT FL P CI++SWKS+++ EY+IAFLVL Sbjct: 65 FQFVEDFAWFAGL-HYRMGVDGISVLFVLLTAFLLPICIIASWKSVEKRVVEYLIAFLVL 123 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 E++VIG F +LD++LFY+FFE L+PMF+IIG+WGG R+YAAYKFFLYT GS+ ML A Sbjct: 124 ETLVIGVFAALDLVLFYLFFEFGLVPMFLIIGIWGGKRRVYAAYKFFLYTLLGSVLMLAA 183 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 I+ M TSSI L KF +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+APT Sbjct: 184 ILAMISISGTSSIPALMTF-KFAPWLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAPT 242 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LAGI+LKMGGYG +RF LP+FP AS+ F P++F +S IAI+Y SLV+ QTDIKK Sbjct: 243 AGSVILAGILLKMGGYGFMRFSLPMFPHASEMFQPLVFAMSAIAIVYTSLVAFRQTDIKK 302 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+AHMG+VT+GIFSG +G +GA+FQMLSHG++S ALF CVGV+YDR+HTR+I Sbjct: 303 LIAYSSVAHMGFVTMGIFSGNAAGEQGALFQMLSHGVISGALFLCVGVVYDRMHTREIAF 362 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGGL + MP YA V ++FTM N+GLPGTSGF+GE L + V++ S A++A+ GV+LSA Sbjct: 363 YGGLTNRMPHYAFVFLLFTMGNVGLPGTSGFVGEILTMTGVYKASTWTAIVAATGVILSA 422 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +Y+L LYR+V++G +++ + DL RE + P+ ++T+ GIYP Sbjct: 423 MYALTLYRRVMYGEITNPELKTITDLDAREILLFVPLIIMTLVLGIYP 470 >gi|254460993|ref|ZP_05074409.1| NADH-quinone oxidoreductase chain m [Rhodobacterales bacterium HTCC2083] gi|206677582|gb|EDZ42069.1| NADH-quinone oxidoreductase chain m [Rhodobacteraceae bacterium HTCC2083] Length = 514 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 254/496 (51%), Positives = 352/496 (70%), Gaps = 15/496 (3%) Query: 5 FLSIVTFLPFLGVFVILFSSYLG--CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LSIVTF+P L ++ R+ +A+ ++ F SLF+ FD + F Sbjct: 4 LLSIVTFIPALAALILALFLRGNDEAAARNAKWLAMIATSATFFVSLFILFQFDSSSTGF 63 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 QM+E W+ Y +GVDGIS+L V+LTTF+ P I +SW + +EYMIAFL+LE Sbjct: 64 QMVEEASWV-MGMQYKMGVDGISVLFVMLTTFMMPLVIAASWD-VNTRVKEYMIAFLLLE 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++++G F++LD++LFY+FFEA LIPMF+IIG+WGG+ RIYA++KFFLYTF GS+ ML A+ Sbjct: 122 TLMLGVFMALDLVLFYVFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLMLVAM 181 Query: 183 VVMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTW 231 V M + T+ I L ++ FS+ Q M++AFF SFA+K+PM+P HTW Sbjct: 182 VAMFVDAGTTDIPTLMTHSFGSESFSLLGIQVVGGLQTLMFLAFFASFAVKMPMWPVHTW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ ++ P+I ++S IAI+Y SL Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGAEVMTPLILWMSAIAIVYTSL 301 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++VQ D+KKLIAYSS+AHMGYVT+GIF+ + G++GA+FQM+SHG +S ALF CVGVIY Sbjct: 302 VALVQEDMKKLIAYSSVAHMGYVTMGIFAANQQGIDGAIFQMISHGFISGALFLCVGVIY 361 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTR+I AYGGLV MP YA++ M FTMAN+GLPGTSGF+GEFL ++ VFQ + VA Sbjct: 362 DRMHTREIDAYGGLVTRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLIGVFQVNTWVAA 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A+ GV+LSA Y+LWLYR+VV G E ++ + D++ RER + P+ V+T+ G+YP Sbjct: 422 VATAGVILSAAYALWLYRRVVMGDLIKESLRTITDMTTRERAIFAPLVVMTLLLGVYPAL 481 Query: 472 IRDTFSVPLSSIIENY 487 + D + +++ NY Sbjct: 482 VLDIIGPSVEALVSNY 497 >gi|110680449|ref|YP_683456.1| NADH dehydrogenase subunit M [Roseobacter denitrificans OCh 114] gi|109456565|gb|ABG32770.1| NADH-quinone oxidoreductase chain M [Roseobacter denitrificans OCh 114] Length = 513 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 253/512 (49%), Positives = 361/512 (70%), Gaps = 27/512 (5%) Query: 6 LSIVTFLPFLGVFVILF-------SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 LSIVTF+P + ++ ++ L R + F + F+ SLF+ + FD Sbjct: 5 LSIVTFIPAMAALILAVFLRGDDEAANLNAKRVAMFA-----TVATFLVSLFILAGFDPQ 59 Query: 59 RSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + FQ +E W+ Y +GVDGIS+L V+LTTF+ P I +SW ++ +EYMIAF Sbjct: 60 DTGFQFVEERDWL-LGLEYKMGVDGISVLFVMLTTFMMPLVIAASW-NVTLRVKEYMIAF 117 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+LE++++G F++LD++LFY+FFEA LIPMF+IIG+WGG+ RIYA++KFFLYTF GS+ M Sbjct: 118 LLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLM 177 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFS------------IQYWMWIAFFCSFAIKIPMF 226 L A+V M + T+ I ++ +F F+ +Q +++AFF SFA+K+PM+ Sbjct: 178 LVAMVGMFADAGTTDI-EMLLRHEFAFANFELLGVQIVGGMQTLLFLAFFASFAVKMPMW 236 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P HTWLP+AHVQAPTAGSV LA I+LK+GGYG IRF LP+FP+A+ +AP+I +LS IAI Sbjct: 237 PVHTWLPDAHVQAPTAGSVVLAAILLKLGGYGFIRFSLPMFPVAADIWAPMILWLSAIAI 296 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 +Y SLV++VQ D+KKLIAYSS+AHMG+VT+GIF+ + GV+GA+FQM+SHG +S ALF C Sbjct: 297 VYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDGAIFQMISHGFISGALFLC 356 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 VGVIYDR+HTRDI AYGGLV+ MP YA++ M+FTMAN+GLPGTSGF+GEFL +M+VFQ + Sbjct: 357 VGVIYDRMHTRDIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGFVGEFLTLMAVFQVN 416 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 VA +A+ GV+ SA Y+LWLYR+VV G E ++ + D++ RER + P+ +T+ G Sbjct: 417 TWVAAVATTGVIFSAAYALWLYRRVVMGDLIKESLKSITDMTSRERWIFAPLVAMTLLLG 476 Query: 467 IYPVPIRDTFSVPLSSIIENYTLKTGYSDSVK 498 +YP + D +++++ Y +++ Sbjct: 477 VYPALVLDITGPSVAALVAGYDTALSAAEAAS 508 >gi|254693552|ref|ZP_05155380.1| NADH dehydrogenase subunit M [Brucella abortus bv. 3 str. Tulya] gi|261213817|ref|ZP_05928098.1| NADH dehydrogenase subunit M [Brucella abortus bv. 3 str. Tulya] gi|260915424|gb|EEX82285.1| NADH dehydrogenase subunit M [Brucella abortus bv. 3 str. Tulya] Length = 395 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 245/394 (62%), Positives = 309/394 (78%), Gaps = 2/394 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP +G +IL RR+ VAL + FI SL VW+ FD Sbjct: 3 DWPILSTVTFLPLVGALLILLIKDDSEASRRNIRNVALLTTVFVFILSLVVWAGFDNSNP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ SYH+GVDGIS+L VVL+ FL PFCIL+SW S+++ +EYMIAFL+ Sbjct: 63 GFQMVEELDWMGSGISYHMGVDGISVLFVVLSAFLMPFCILASWVSVEKRVKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+++IG F +LD+ LFY+FFEASLIPMF+IIGVWGG R+YA+ KFFLYT GS+ ML Sbjct: 123 LETLMIGVFCALDLFLFYVFFEASLIPMFIIIGVWGGKRRVYASLKFFLYTLLGSVLMLI 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M W+ T +I++L + FP S+Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AIMAMYWQAGTMNIVELLQYN-FPASMQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG IRF LP+FPLAS FAP IF LS++AIIY SLV+MVQ D+K Sbjct: 242 TAGSVILAGILLKLGGYGFIRFSLPMFPLASADFAPFIFTLSVVAIIYTSLVAMVQEDMK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM YVT+GIF+ + G++GA+FQMLSHG+VS ALF CVGVIYDR+HTR+I Sbjct: 302 KLIAYSSVAHMAYVTMGIFAANEQGLQGAIFQMLSHGIVSGALFLCVGVIYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 A+GGLV+NMP+YAV ++FTMAN+GLPGTSGFIG Sbjct: 362 AFGGLVNNMPKYAVAFLIFTMANVGLPGTSGFIG 395 >gi|315499802|ref|YP_004088605.1| proton-translocating NADH-quinone oxidoreductase, chain m [Asticcacaulis excentricus CB 48] gi|315417814|gb|ADU14454.1| proton-translocating NADH-quinone oxidoreductase, chain M [Asticcacaulis excentricus CB 48] Length = 500 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 251/490 (51%), Positives = 347/490 (70%), Gaps = 12/490 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCG------RRSFFGVALGISTINFIFSLFVWSVFDKGR 59 LS++TFLP +G F IL ++ R+ +AL + ++ + + FD+ Sbjct: 9 LSLITFLPLVGAFAILGVKWVSRKDDASVIERNAKWIALWTTLATLALTVILLAGFDRTT 68 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + +Q +E W F SYH+GVDGIS+L V LT L P CIL+SW S++ EYMIAFL Sbjct: 69 TDYQFVEKVQWFS-FLSYHMGVDGISVLFVALTALLMPLCILASWDSVKTRLVEYMIAFL 127 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VLE++VIG F +LD+ LFY+FFE L+PMF+IIG+WGG +RIYAAYKFFLYT GS+ ML Sbjct: 128 VLETLVIGVFTALDLFLFYVFFEGGLVPMFLIIGIWGGKDRIYAAYKFFLYTLLGSVLML 187 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A++ M TS D+ +S + FS Q W+W AFF SFA+K+PM+P HTWLP+AHV Sbjct: 188 AAMLYMVGVAGTS---DIPTLSTYAFSQAAQPWLWFAFFASFAVKMPMWPVHTWLPDAHV 244 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 QAPTAGSV LAGI+LK+GGYG IRF LP+FP AS+ F P + LS+IAI+ SL++ QT Sbjct: 245 QAPTAGSVLLAGILLKLGGYGFIRFNLPMFPYASELFTPFVLTLSVIAIVVTSLIAFRQT 304 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIKKLIAYSS+AHMG+VT+GIF+G ++GV+GA++QM+SHG +S ALF CVGV+YDR HTR Sbjct: 305 DIKKLIAYSSVAHMGFVTMGIFAGNQAGVQGAVYQMISHGFISGALFLCVGVVYDRWHTR 364 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I YGGL MP +A V ++FTMAN+GLPGTSGF+GE L + ++Q S A++A+ GV Sbjct: 365 EIAFYGGLTKLMPHFAFVFLLFTMANVGLPGTSGFVGEILTMTGLYQASTWAALVAATGV 424 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +LSA+Y+L L+++V++G E+++ DL+LRE+ + P+ T+ GIYP + D + Sbjct: 425 ILSAMYALTLFKRVMYGEVTNEQLKGHPDLTLREKIIFAPLIAGTLLLGIYPAFVFDFTT 484 Query: 478 VPLSSIIENY 487 + +++ Y Sbjct: 485 ASVDAVVATY 494 >gi|83942653|ref|ZP_00955114.1| NADH dehydrogenase subunit M [Sulfitobacter sp. EE-36] gi|83846746|gb|EAP84622.1| NADH dehydrogenase subunit M [Sulfitobacter sp. EE-36] Length = 518 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 253/505 (50%), Positives = 360/505 (71%), Gaps = 21/505 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVI---LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 M+ LSI+TF+P ++ L GR + + +AL +T+ F+ SLF+ FD Sbjct: 1 MDHHLLSIITFMPSFAALILAVFLRGDDAAAGRNAKW-LALITTTVTFLISLFILFDFDP 59 Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + FQ ++ W+ Y LGVDGISIL V+LTTF+ P I +SW +++ +EYMIA Sbjct: 60 SNTGFQFVDEAQWL-MGLQYRLGVDGISILFVMLTTFMMPLVIAASW-NVETRVKEYMIA 117 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL+LE++++G F++LD++LFY+FFEA LIPMF+IIG+WGG+ RIYA++KFFLYTF GS+ Sbjct: 118 FLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVL 177 Query: 178 MLFAIVVMCWEKKTSSI--------IDLYAMSKFPFS-------IQYWMWIAFFCSFAIK 222 ML A+V+M + T+ I +A F + +Q M++AFF SFA+K Sbjct: 178 MLVAMVMMYADAGTTCIGGCEVSLLTHTFASDSFSIAGITVVGGLQTMMFLAFFASFAVK 237 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PM+P HTWLP+AHVQAPTAGSV LA I+LKMGGYG +RF +P+FP+ + AP++ ++S Sbjct: 238 MPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSVPMFPVGADVMAPLVLWMS 297 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 IAI+Y SLV++VQ D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQM+SHG +S+A Sbjct: 298 AIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFISAA 357 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF CVGVIYDR+HTR+I AYGGLV+ MP YA+V M FTMAN+GLPGTSGF+GEFL +M Sbjct: 358 LFLCVGVIYDRMHTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGEFLTLMGT 417 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 FQ + VA +A+ GV+ SA Y+LWLYR+VV G E ++ + D+S RER + P+ +T Sbjct: 418 FQVNTWVAAVATSGVIFSAAYALWLYRRVVMGDLIKESLRTITDMSRRERWIFAPLVAMT 477 Query: 463 VFFGIYPVPIRDTFSVPLSSIIENY 487 + G+YP + D +++++++Y Sbjct: 478 LLLGVYPALVLDMIGPSVAALVDSY 502 >gi|83953894|ref|ZP_00962615.1| NADH dehydrogenase subunit M [Sulfitobacter sp. NAS-14.1] gi|83841839|gb|EAP81008.1| NADH dehydrogenase subunit M [Sulfitobacter sp. NAS-14.1] Length = 518 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 253/505 (50%), Positives = 360/505 (71%), Gaps = 21/505 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVI---LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 M+ LSI+TF+P ++ L GR + + +AL +T+ F+ SLF+ FD Sbjct: 1 MDHHLLSIITFMPSFAALILAVFLRGDDAAAGRNAKW-LALITTTVTFLISLFILFDFDP 59 Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + FQ ++ W+ Y LGVDGISIL V+LTTF+ P I +SW +++ +EYMIA Sbjct: 60 SNTGFQFVDEAQWL-MGLKYRLGVDGISILFVMLTTFMMPLVIAASW-NVETRVKEYMIA 117 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL+LE++++G F++LD++LFY+FFEA LIPMF+IIG+WGG+ RIYA++KFFLYTF GS+ Sbjct: 118 FLLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVL 177 Query: 178 MLFAIVVMCWEKKTSSI--------IDLYAMSKFPFS-------IQYWMWIAFFCSFAIK 222 ML A+V+M + T+ I +A F + +Q M++AFF SFA+K Sbjct: 178 MLVAMVMMYADAGTTCIGGCEVSLLTHTFASDSFSIAGITVVGGLQTMMFLAFFASFAVK 237 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PM+P HTWLP+AHVQAPTAGSV LA I+LKMGGYG +RF +P+FP+ + AP++ ++S Sbjct: 238 MPMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSVPMFPVGADVMAPLVLWMS 297 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 IAI+Y SLV++VQ D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQM+SHG +S+A Sbjct: 298 AIAIVYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFISAA 357 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF CVGVIYDR+HTR+I AYGGLV+ MP YA+V M FTMAN+GLPGTSGF+GEFL +M Sbjct: 358 LFLCVGVIYDRMHTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGEFLTLMGT 417 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 FQ + VA +A+ GV+ SA Y+LWLYR+VV G E ++ + D+S RER + P+ +T Sbjct: 418 FQVNTWVAAVATSGVIFSAAYALWLYRRVVMGDLIKESLRTITDMSRRERWIFAPLVAMT 477 Query: 463 VFFGIYPVPIRDTFSVPLSSIIENY 487 + G+YP + D +++++++Y Sbjct: 478 LLLGVYPALVLDMIGPSVAALVDSY 502 >gi|126727170|ref|ZP_01743007.1| NADH dehydrogenase subunit M [Rhodobacterales bacterium HTCC2150] gi|126703598|gb|EBA02694.1| NADH dehydrogenase subunit M [Rhodobacterales bacterium HTCC2150] Length = 514 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 254/496 (51%), Positives = 351/496 (70%), Gaps = 15/496 (3%) Query: 5 FLSIVTFLPFLG--VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LSI+ FLP + + + R + VAL +++ F+ S+ + + FD + F Sbjct: 4 LLSIIIFLPAVAAVILALFLRGDDKFARLNAKRVALAATSVTFLASIGLLADFDPQNTGF 63 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E WI +Y LGVDGISIL V+LTTFL P +LS W ++ ++YMIAFLVLE Sbjct: 64 QFVEEATWIAGL-TYKLGVDGISILFVMLTTFLMPIVVLSCW-NVDNRVKDYMIAFLVLE 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++++G F +LD++LFY+FFEA LIPMF+IIG+WGG +RIYA++KFFLYT GS+ ML A+ Sbjct: 122 TLMLGVFCALDLILFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTLLGSVLMLVAM 181 Query: 183 VVMCWEKKTSSIIDL--YAMSKFPFSI---------QYWMWIAFFCSFAIKIPMFPFHTW 231 + M + T+ I L ++ FS+ Q MW+AFF SFA+K+PM+P HTW Sbjct: 182 IAMYVDAGTTDIPTLMTHSFGSETFSLLGIQIIGGAQTLMWLAFFASFAVKMPMWPVHTW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S AP++ ++S IAI+Y SL Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMAPLVLWMSAIAIVYTSL 301 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++VQ D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQM+SHG +S ALF CVGVIY Sbjct: 302 VALVQQDMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMISHGFISGALFLCVGVIY 361 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTR+I AYGGLV+ MP YA+V M FTMAN+GLPGTSGF+GEFL +M FQ + VA Sbjct: 362 DRMHTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGEFLTLMGAFQVNTWVAA 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A+ GV+LSA Y+LWLYR+VV G E ++ + D++ ER + P+ +T+ G+YP Sbjct: 422 IATSGVILSAGYALWLYRRVVMGDLIKESLKSITDMTTMERAIFAPLIAMTLLLGVYPAL 481 Query: 472 IRDTFSVPLSSIIENY 487 + D + ++I+NY Sbjct: 482 VLDIIGPSVEALIDNY 497 >gi|163732044|ref|ZP_02139490.1| NADH dehydrogenase subunit M [Roseobacter litoralis Och 149] gi|161394342|gb|EDQ18665.1| NADH dehydrogenase subunit M [Roseobacter litoralis Och 149] Length = 513 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 252/512 (49%), Positives = 361/512 (70%), Gaps = 27/512 (5%) Query: 6 LSIVTFLPFLGVFVILF-------SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 LSIVTF+P + ++ ++ L R + F + F+ SLF+ + FD Sbjct: 5 LSIVTFIPAMAALILAVFLRGDDEAANLNAKRVAMFA-----TVATFLVSLFILAGFDPQ 59 Query: 59 RSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + FQ +E W+ Y +GVDGIS+L V+LTTF+ P I +SW ++ +EYMIAF Sbjct: 60 DTGFQFVEERDWL-LGLEYKMGVDGISVLFVMLTTFMMPLVIAASW-NVTLRVKEYMIAF 117 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+LE++++G F++LD++LFY+FFEA LIPMF+IIG+WGG+ RIYA++KFFLYTF GS+ M Sbjct: 118 LLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLM 177 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFS------------IQYWMWIAFFCSFAIKIPMF 226 L A+V M + T+ I ++ +F F+ +Q +++AFF SFA+K+PM+ Sbjct: 178 LVAMVGMFADAGTTDI-EMLLRHEFSFADFDLLGIQIVGGMQTLLFLAFFASFAVKMPMW 236 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P HTWLP+AHVQAPTAGSV LA I+LK+GGYG IRF LP+FP+A+ +AP+I +LS IAI Sbjct: 237 PVHTWLPDAHVQAPTAGSVVLAAILLKLGGYGFIRFSLPMFPVAADIWAPMILWLSAIAI 296 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 +Y SLV++VQ D+KKLIAYSS+AHMG+VT+GIF+ + GV+GA+FQM+SHG +S ALF C Sbjct: 297 VYTSLVALVQEDMKKLIAYSSVAHMGFVTMGIFAANQQGVDGAIFQMISHGFISGALFLC 356 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 VGVIYDR+HTR+I AYGGLV+ MP YA++ M+FTMAN+GLPGTSGF+GEFL +M+VFQ + Sbjct: 357 VGVIYDRMHTREIDAYGGLVNRMPAYALIFMLFTMANVGLPGTSGFVGEFLTLMAVFQVN 416 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 VA +A+ GV+ SA Y+LWLYR+VV G E ++ + D++ RER + P+ +T+ G Sbjct: 417 TWVAAVATTGVIFSAAYALWLYRRVVMGDLIKESLKSITDMTSRERWIFAPLVAMTLLLG 476 Query: 467 IYPVPIRDTFSVPLSSIIENYTLKTGYSDSVK 498 +YP + D +++++ Y +++ Sbjct: 477 VYPALVLDITGPSVAALVAGYDTALSAAEAAS 508 >gi|254487062|ref|ZP_05100267.1| NADH-quinone oxidoreductase chain m [Roseobacter sp. GAI101] gi|214043931|gb|EEB84569.1| NADH-quinone oxidoreductase chain m [Roseobacter sp. GAI101] Length = 518 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 254/504 (50%), Positives = 357/504 (70%), Gaps = 19/504 (3%) Query: 1 MNLPFLSIVTFLPFLGVFV--ILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 M+ LSI+TF+P + + R+ +AL +++ F+ SLF+ FD Sbjct: 1 MDHHLLSIITFMPSFAALILAVFLRGDDAAAARNAKWLALISTSVTFLISLFILFDFDPA 60 Query: 59 RSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + FQ ++ WI Y +GVDGISIL V+LTTF+ P I +SW ++ +EYMIAF Sbjct: 61 DTGFQFVDEATWI-MGLQYRMGVDGISILFVMLTTFMMPLVIAASW-NVDTRVKEYMIAF 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+LE++++G F++LD++LFY+FFEA LIPMF+IIG+WGG+ RIYA++KFFLYTF GS+ M Sbjct: 119 LLLETLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGANRIYASFKFFLYTFLGSVLM 178 Query: 179 LFAIVVMCWEKKTSSI--------IDLYAMSKFPFS-------IQYWMWIAFFCSFAIKI 223 L A+V M + T+ I + +A F + +Q M++AFF SFA+K+ Sbjct: 179 LVAMVAMYADAGTTCIGGCEVSLLTNTFASETFTVAGISVVGGMQTLMFLAFFASFAVKM 238 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 PM+P HTWLP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S AP + ++S Sbjct: 239 PMWPVHTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVIAPWVLWMSA 298 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 IAI+Y SLV++VQ D+KKLIAYSS+AHMG+VT+GIF+ + G++GA+FQM+SHG +S+AL Sbjct: 299 IAIVYTSLVALVQQDMKKLIAYSSVAHMGFVTMGIFTFNQQGLDGAIFQMVSHGFISAAL 358 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 F CVGVIYDR+HTR+I AYGGLV+ MP YA+V M FTMAN+GLPGTSGF+GEFL +M++F Sbjct: 359 FLCVGVIYDRMHTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGEFLTLMAIF 418 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 Q + VA +A+ GV+ SA Y+LWLYR+VV G E ++ + D+S RER + P+ V+T+ Sbjct: 419 QVNTWVAAVATTGVIFSAAYALWLYRRVVMGDLIKESLKTITDMSGRERWIFAPLVVMTL 478 Query: 464 FFGIYPVPIRDTFSVPLSSIIENY 487 GIYP + D +++++ +Y Sbjct: 479 LLGIYPALVLDIIGPSVTALVASY 502 >gi|84686451|ref|ZP_01014345.1| NADH dehydrogenase subunit M [Maritimibacter alkaliphilus HTCC2654] gi|84665634|gb|EAQ12110.1| NADH dehydrogenase subunit M [Rhodobacterales bacterium HTCC2654] Length = 517 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 255/496 (51%), Positives = 347/496 (69%), Gaps = 15/496 (3%) Query: 5 FLSIVTFLPFLGVFVI--LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LSI+TFLP + ++ +R+ +AL +T F+ SL V FD + F Sbjct: 4 LLSIITFLPLVAALILALFLRGDDPAAQRNAKWLALAATTATFLISLGVLFGFDPSDTGF 63 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E W+ Y +GVDGIS+L V+LTTFL P I + W ++ +EYMIAFLVLE Sbjct: 64 QFVEEADWL-MGLQYKMGVDGISVLFVMLTTFLMPITIAACW-NVTTRVKEYMIAFLVLE 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++++G F++LD++LFY+FFEA LIPMF+IIG+WGG RIYAA+KFFLYTF GS+ ML A+ Sbjct: 122 TLMLGVFMALDLVLFYLFFEAGLIPMFLIIGIWGGKNRIYAAFKFFLYTFLGSVLMLVAM 181 Query: 183 VVMCWEKKTSSI-------IDLYAMSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTW 231 V M E T+ I D M ++ Q +++AFF SFA+K+PM+P HTW Sbjct: 182 VYMFMEAGTTDIPTLLNHAFDSTTMRVLGITVTGGAQTLLFVAFFASFAVKMPMWPVHTW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S A + +LS IAI+Y SL Sbjct: 242 LPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMATFVLWLSAIAIVYTSL 301 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++VQ D+KKLIAYSS+AHMGYVT GIF+ + G++GA+FQM+SHG +S ALF CVGVIY Sbjct: 302 VALVQEDMKKLIAYSSVAHMGYVTAGIFAANQQGIDGAIFQMISHGFISGALFLCVGVIY 361 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTR+I AYGGLV+ MP YA+V M FTMAN+GLPGTSGF+GEFL ++ +FQ + VA Sbjct: 362 DRMHTREIDAYGGLVNRMPAYALVFMFFTMANVGLPGTSGFVGEFLTLVGMFQANTWVAA 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A+ GV+LSA Y+LWLYR+VV G E ++ + D+S RE+ + P+A +T+ G+YP Sbjct: 422 VATSGVILSAAYALWLYRRVVMGDLIKESLKAITDMSRREKWIFAPLAAMTLLLGVYPSL 481 Query: 472 IRDTFSVPLSSIIENY 487 + D + +++ +Y Sbjct: 482 VTDIIGPSVENLLNHY 497 >gi|167646782|ref|YP_001684445.1| NADH dehydrogenase subunit M [Caulobacter sp. K31] gi|167349212|gb|ABZ71947.1| proton-translocating NADH-quinone oxidoreductase, chain M [Caulobacter sp. K31] Length = 494 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 253/469 (53%), Positives = 335/469 (71%), Gaps = 6/469 (1%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFG----VALGISTINFIFSLFVWSVFDKGRS 60 LS+ TF P +GV V+L L +AL + + F S+ + + FD Sbjct: 4 LLSLTTFAPLVGVAVLLAVRALQGDNAKTDSLAKWIALATTLVTFALSIILVAKFDARNP 63 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ +E W Y +GVDGIS+L V+LT FL P C+++SWKSI + EYMI FLV Sbjct: 64 GFQFVEDAAWFAGL-HYRMGVDGISVLFVLLTAFLLPICVIASWKSIDKRVVEYMICFLV 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE++VIG F +LD++LFY+FFE L+PMF+IIG+WGG R+YAAYKFFLYT GS+ ML Sbjct: 123 LETLVIGVFCALDLILFYLFFEGGLVPMFLIIGIWGGKRRVYAAYKFFLYTLLGSVLMLA 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI+ M +TSSI DL KF +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+AP Sbjct: 183 AILSMIAIARTSSIPDLMHF-KFAPWLQTWLWLAFFASFAVKMPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAGI+LK+GGYG +RF LP+FP AS+ F P++F +S IAI+Y SLV+ QTDIK Sbjct: 242 TAGSVILAGILLKLGGYGFMRFSLPMFPNASELFQPLVFAMSAIAIVYTSLVAFRQTDIK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHMG+VT+GIFSG G +GA+FQMLSHG++S ALF CVGV+YDR+HTR+I Sbjct: 302 KLIAYSSVAHMGFVTMGIFSGNVQGEQGALFQMLSHGVISGALFLCVGVVYDRMHTREIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGGL + MP YA V M+FTM N+GLPGTSGF+GE L ++ ++ S A++AS GV+LS Sbjct: 362 FYGGLTNRMPWYAAVFMLFTMGNVGLPGTSGFVGEILTMVGTYKASTWTALVASTGVILS 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A+Y+L LYR+V+FG +++ + DL RE + P+ + T+ G+YP Sbjct: 422 AVYALNLYRRVMFGEIVNPELKTIADLDKREILIFAPLIIATLVLGVYP 470 >gi|117926897|ref|YP_867514.1| proton-translocating NADH-quinone oxidoreductase, chain M [Magnetococcus sp. MC-1] gi|117610653|gb|ABK46108.1| NADH dehydrogenase subunit M [Magnetococcus sp. MC-1] Length = 497 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 258/490 (52%), Positives = 351/490 (71%), Gaps = 6/490 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA-LGISTINFIFSLFVWSVFDKGRSSFQM 64 LS++TFLP +G IL +++ R +A +GIST+ I SL ++ FD + FQ Sbjct: 2 LSLLTFLPLIGALAIL--AFVERQRDDIARLAAMGISTVVLILSLLLYGEFDPSVAGFQF 59 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 + W+ Y +GVDGIS V+LT LTP CIL+SW+SIQ+ +EYM AFL LES Sbjct: 60 TQEAAWLPALGIHYRMGVDGISYPFVMLTALLTPICILASWQSIQKRVKEYMAAFLALES 119 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 VIG F +LD LFY+ +EA LIPMF+IIGVWGG R+YAA KFFLYT GS+ ML A++ Sbjct: 120 FVIGVFCALDFALFYVLWEAMLIPMFLIIGVWGGQNRVYAAMKFFLYTLAGSVLMLVAMI 179 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + T SI +L + + PF+ Q W+++AFF +FA+K+PM+PFHTWLP+AHVQAPTAG Sbjct: 180 SLYVTTGTFSIPELMEV-QLPFNYQMWLFLAFFIAFAVKVPMWPFHTWLPDAHVQAPTAG 238 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI+LKMG YG +RF LP+ P AS+Y A IF LSL+AI+Y +LV++VQTD+KKLI Sbjct: 239 SVILAGILLKMGAYGFLRFSLPILPDASRYMADFIFVLSLVAIVYTALVALVQTDMKKLI 298 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG+VTIGIF+ + G+EG++ QM++HG+VS ALF VGVIYDRLHTR++ +G Sbjct: 299 AYSSVSHMGFVTIGIFAFNQQGIEGSILQMINHGIVSGALFLIVGVIYDRLHTRELSRFG 358 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL MP YAV+ M+FTMA++GLPGT+GFIGEFL++M F + TVA +A+ G+VL A Y Sbjct: 359 GLAIRMPIYAVIFMLFTMASVGLPGTNGFIGEFLILMGAFFANTTVAFVAATGLVLGAAY 418 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 LWLY++V+FG E+ + L D++ RE + P+ VL ++ G YP P D F ++ + Sbjct: 419 MLWLYKQVMFGEMVHEENRSLMDVNGREIALFVPLIVLVLWIGFYPNPFLDAFHSSVAHL 478 Query: 484 IEN-YTLKTG 492 ++ +KTG Sbjct: 479 VDQVQVVKTG 488 >gi|310816700|ref|YP_003964664.1| NADH dehydrogenase subunit M [Ketogulonicigenium vulgare Y25] gi|308755435|gb|ADO43364.1| NADH dehydrogenase subunit M [Ketogulonicigenium vulgare Y25] Length = 507 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 252/504 (50%), Positives = 363/504 (72%), Gaps = 18/504 (3%) Query: 5 FLSIVTFLPFLGVFVI-LFSSYLGCG-RRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LS+VTFLP LG V+ LF+ +++ VALG++ F SLF+ + FD F Sbjct: 2 LLSLVTFLPALGALVLALFTRGESPTVQQNARWVALGVTIATFAASLFILAGFDPAYDGF 61 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E W+ SY LGVDGIS+L V+LTTFL P IL++W +Q+ R MIA+LVLE Sbjct: 62 QFVEDRAWV-MGMSYRLGVDGISVLFVLLTTFLMPLVILTAWP-VQDRTRTLMIAWLVLE 119 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +++IG F +LD++LFY+FFEA LIPMF+IIGVWGG R+YAA+KFFLYTF GS+ ML A+ Sbjct: 120 TLMIGVFTALDLVLFYLFFEAGLIPMFLIIGVWGGKNRVYAAFKFFLYTFLGSVLMLVAM 179 Query: 183 VVMCWEKKTSSI-------IDLYAMSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTW 231 +VM WE T+ I I+L A +PF + Q +++AFF SFA+K+PM+P HTW Sbjct: 180 LVMYWESGTTCIAACGEGAIELIA---YPFPVAGGMQVLLFLAFFASFAVKMPMWPVHTW 236 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPT+GSV LA ++LKMGGYG +RF LP+FP+AS AP++ +LS IA++YASL Sbjct: 237 LPDAHVQAPTSGSVILAAVLLKMGGYGFLRFSLPMFPVASDMLAPLMLWLSAIAVVYASL 296 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++VQ+D+KKLIAYSS+AHMG+VT+G+F+ + GV+GA+FQM+SHG +S+ALF VGVIY Sbjct: 297 VALVQSDMKKLIAYSSVAHMGFVTMGMFALNRQGVDGAIFQMISHGFISAALFLLVGVIY 356 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTR+I A+GGL++ MP Y + ++FTMAN+GLPGTSGF+GEFL ++ +Q + VA+ Sbjct: 357 DRMHTREISAFGGLLNRMPAYGALFLLFTMANIGLPGTSGFVGEFLTLLGTYQANTWVAL 416 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A G++ SA Y LWL+R+V+ G + ++ ++D++ RE + P+ V+T+ G+YP Sbjct: 417 VAGTGIIFSAGYGLWLFRRVIMGPILHKPLEAIQDITPREAAIFVPLVVMTILLGVYPSL 476 Query: 472 IRDTFSVPLSSIIENYTLKTGYSD 495 + D + ++++ + ++ Sbjct: 477 VTDITGPSVQRLVDHVAAELAAAN 500 >gi|114569917|ref|YP_756597.1| NADH dehydrogenase subunit M [Maricaulis maris MCS10] gi|114340379|gb|ABI65659.1| NADH dehydrogenase subunit M [Maricaulis maris MCS10] Length = 504 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 253/490 (51%), Positives = 345/490 (70%), Gaps = 9/490 (1%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGR------RSFFGVALGISTINFIFSLFVWSVFDKG 58 FLSI+TF+P LG VI + R+ VA + + S+ + + FD Sbjct: 8 FLSILTFVPALGALVIAIFRFTARSEDQSLIDRNSRWVAWLATMVTLGMSVLLLANFDAE 67 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + FQ + W++ Y +GVDG+SIL VVLT FL P CI++S +I+ +YMIA Sbjct: 68 ATGFQFVHEVTWLEQIGLGYRMGVDGLSILFVVLTAFLMPICIMAS-GAIKTRVADYMIA 126 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL+LE+MVIG F +LD++LFYIFFE LIPMF+IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 127 FLLLETMVIGVFCALDLVLFYIFFEGGLIPMFIIIGVWGGQNRVYAAFKFFLYTLLGSVL 186 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML A++VM + T+ + L ++F + Q WMW+AFF SFA+K+PM+P HTWLP+AHV Sbjct: 187 MLVAMIVMFLQAGTTDVTVLLE-TEFARNAQMWMWLAFFASFAVKMPMWPVHTWLPDAHV 245 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 QAPTAGSV LAG++LK+GGYG +RF LP+FP AS YFAP++F LS+IAIIY SLV+ QT Sbjct: 246 QAPTAGSVILAGVLLKLGGYGFLRFSLPMFPEASDYFAPMVFVLSIIAIIYTSLVAFRQT 305 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIKKLIAYSS+AHMG+VT+G+F+ ++GV+GA+FQM+SHG++S ALF CVGVIYDR+HTR Sbjct: 306 DIKKLIAYSSVAHMGFVTMGLFAMNETGVQGAIFQMISHGVISGALFLCVGVIYDRMHTR 365 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I YGGLVH MP +A + +F MAN+GLPGTSGF+GE + ++ FQ S +A A+ GV Sbjct: 366 EIAFYGGLVHRMPVFAAIFGLFAMANVGLPGTSGFVGEIMTMVGAFQVSWWIATGAAVGV 425 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +LSA+Y L +YR VVFG K++ + DL+ E + P+ + T+ G++ I D + Sbjct: 426 ILSAMYMLTVYRDVVFGEITNPKLETITDLNRMEWLIFIPLIIGTLLLGVFSTLITDVTA 485 Query: 478 VPLSSIIENY 487 + ++ NY Sbjct: 486 TAVDHLLSNY 495 >gi|114797733|ref|YP_760461.1| NADH-quinone oxidoreductase subunit M [Hyphomonas neptunium ATCC 15444] gi|114737907|gb|ABI76032.1| NADH-quinone oxidoreductase, M subunit [Hyphomonas neptunium ATCC 15444] Length = 500 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 252/478 (52%), Positives = 342/478 (71%), Gaps = 16/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYL----------GCGRRSFFGVALGISTINFIFSLFVWS 53 P L+ +TFLP +G +I+ G R+ +L IS F+ S+ + Sbjct: 5 PILTAMTFLPLIGALLIVLVRAATAGSRAAADDGRQNRAILMASLIISAATFVLSVAAFL 64 Query: 54 VFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD G+ +Q++E + W SY LG+DG+S+ L++LTTFLTP C+L+SW SI + E Sbjct: 65 SFDPGQMGYQLVEQHAWYGP-ISYKLGIDGLSMSLILLTTFLTPICLLASWNSIDKRVTE 123 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y++AFLVLE+ +IG F +LD++LFYIFFEA LIPMF+IIG+WGG +RIYA++KFFLYT Sbjct: 124 YVVAFLVLETFMIGVFTALDLVLFYIFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTLI 183 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTW 231 GS+ +L A + M + + D + +F F +Q W+W+AF SFA+K+PM+P HTW Sbjct: 184 GSLLLLVAAIYMI---QVAGSADFEVLEQFAFDPGVQTWLWLAFLASFAVKLPMWPVHTW 240 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHVQAPTAGSV LAG++LKMGGYG +RF LP+FP AS YF P++F L++IAIIY SL Sbjct: 241 LPDAHVQAPTAGSVVLAGVLLKMGGYGMLRFSLPMFPDASAYFQPMMFALAVIAIIYTSL 300 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V+ QTD+KKLIAYSS+AHMG+VT+GIF+ ++G++GA+FQMLSHGL+S ALF VGV+Y Sbjct: 301 VAWRQTDMKKLIAYSSVAHMGFVTLGIFAFNETGIQGAIFQMLSHGLISGALFLIVGVVY 360 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+HTR+I AYGGLV MP YA M+FTMAN+GLPGTSGF+GE L ++ FQ + A Sbjct: 361 DRMHTREIAAYGGLVGRMPIYAGFFMLFTMANVGLPGTSGFVGEILTMIGGFQAATWAAF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A+FGV+ SA+Y L LYR+ VFG ++ +KD++ E + P+AVLTV FG+ P Sbjct: 421 GAAFGVIFSAVYMLTLYRRTVFGEITNPLLEDIKDMNRIEWVCIAPLAVLTVLFGVAP 478 >gi|114327954|ref|YP_745111.1| NADH-quinone oxidoreductase chain M [Granulibacter bethesdensis CGDNIH1] gi|114316128|gb|ABI62188.1| NADH-quinone oxidoreductase chain M [Granulibacter bethesdensis CGDNIH1] Length = 506 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/452 (53%), Positives = 331/452 (73%), Gaps = 2/452 (0%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 AL S + F FSL +W FD + Q +E W+ F Y +GVDGIS+L V+L+TFL Sbjct: 41 ALWTSLVVFAFSLVLWVRFDPAQPGMQFVESVQWLPEFGVRYSVGVDGISVLFVLLSTFL 100 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 TP CIL+SW +I RE+MIAFLVLE+M++G F + D LLFYIFFEA LIPM++IIG+W Sbjct: 101 TPICILASWDAIHTRVREFMIAFLVLETMMVGMFSATDFLLFYIFFEAVLIPMYLIIGIW 160 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF 215 G + R+YAA KFFLYT GS+ ML A++ M W ++ I ++FP +Q+W+++AF Sbjct: 161 GHARRVYAALKFFLYTLAGSVLMLLALLTM-WHYAGTTDIPTLLHTRFPVHMQFWLFLAF 219 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 SFA+K+PM+P HTWLP+AHV+APTAGSV LAG++LKMGGYG +RF +P+ P A +YFA Sbjct: 220 LASFAVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGGYGFLRFSVPMLPDAVEYFA 279 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 P++F LS++A+IY S+V+ Q ++KKLIAYSSIAHMG VTIGIF+ + G+ GA+FQMLS Sbjct: 280 PLMFALSVMAVIYTSIVAFAQENMKKLIAYSSIAHMGVVTIGIFTVNQQGLSGALFQMLS 339 Query: 336 HGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGE 395 HG+VS+ALF CVGV+YDRLHT +I YGGLV MP YA V +VFTMA +GLPGT GF+GE Sbjct: 340 HGVVSAALFLCVGVVYDRLHTLEINRYGGLVERMPAYAAVFLVFTMATIGLPGTGGFVGE 399 Query: 396 FLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 LV++ F+ S +A+L S G++L A+YSLWLYR+V+ G +++ + DL+ RE + Sbjct: 400 ILVLIGAFKVSIWIALLGSTGMILGAVYSLWLYRRVILGRMTLGELRSMFDLNTREIVVF 459 Query: 456 YPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 P+ +LT++ G+YP F ++ +++ + Sbjct: 460 VPLVLLTLWMGVYPSSFTHFFDATVNDLVQQH 491 >gi|330813994|ref|YP_004358233.1| NADH-ubiquinone oxidoreductase chain M [Candidatus Pelagibacter sp. IMCC9063] gi|327487089|gb|AEA81494.1| NADH-ubiquinone oxidoreductase chain M [Candidatus Pelagibacter sp. IMCC9063] Length = 500 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 270/492 (54%), Positives = 364/492 (73%), Gaps = 4/492 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVILFS--SYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MNLP L+I+TFLP +GVF ILF+ G+ SF V+L S + F+ SLF+W FDK Sbjct: 1 MNLPILTIITFLPLIGVFFILFNKGEEERVGKISFH-VSLLTSLLVFVLSLFLWFSFDKT 59 Query: 59 RSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 SSFQ +E WI F Y +GVDGISIL VVLT F+TP CI++++ S++ +++ IA Sbjct: 60 ISSFQFVEEKKWIIDFVKYKVGVDGISILFVVLTAFITPICIVATYNSVKFRKKDFFIAL 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LV+E+M+IG F SLD+ LFY+FFEA LIPMF+IIG+WGG R+YAA+KFFLYT GS+FM Sbjct: 120 LVMETMMIGVFCSLDLFLFYLFFEAGLIPMFLIIGIWGGIRRVYAAFKFFLYTLLGSVFM 179 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L AI+ + + T+ + L A+ P QY +W+ FF SFA+K PM+P HTWLP+AHV+ Sbjct: 180 LIAIIFIYMQTGTTDVEALLALD-IPVQYQYLLWLGFFASFAVKTPMWPVHTWLPDAHVE 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT+GSV LA I+LKM GYG IRF L LFP+AS +F+P++F LS+IAI+Y SLV++VQ D Sbjct: 239 APTSGSVILAAILLKMAGYGFIRFSLGLFPVASDFFSPLVFSLSIIAIVYTSLVALVQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKLIAYSS+AHMG+VTIGIF+ G+EG++FQM+SHG+VS+ALF CVGV+YDR+HTR Sbjct: 299 MKKLIAYSSVAHMGFVTIGIFAFNSQGIEGSIFQMISHGIVSAALFLCVGVVYDRMHTRQ 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+ + MP YA+V MVF +A++GLPGTSGF+GE LV++ +F+ + VA A+ GVV Sbjct: 359 ISDYGGVSNVMPNYAIVFMVFILASVGLPGTSGFVGEILVLIGIFKTNYLVAFFAATGVV 418 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 LSA YSL LYR+V FG +KV+ LKD++ E + P+ +L + G+YP I DT S Sbjct: 419 LSACYSLSLYRRVCFGEIINDKVKVLKDMNYSEYITLIPLLILVILLGVYPNIILDTIST 478 Query: 479 PLSSIIENYTLK 490 + +++ Y +K Sbjct: 479 SVENLVSVYNVK 490 >gi|329850716|ref|ZP_08265561.1| NADH-quinone oxidoreductase subunit M [Asticcacaulis biprosthecum C19] gi|328841031|gb|EGF90602.1| NADH-quinone oxidoreductase subunit M [Asticcacaulis biprosthecum C19] Length = 504 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 251/496 (50%), Positives = 346/496 (69%), Gaps = 10/496 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGR------RSFFGVALGISTINFIFSLFVWSVFDKGR 59 LSIVTF P G VI+ L R+ ++L + + S+ + F+ Sbjct: 9 LSIVTFAPLFGAAVIMILRALSRRDDEAVIARNAKWISLWTTLVTLALSVVMLLQFNGAS 68 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 ++Q E+Y W SYH+GVDGISIL V LT FL P CI +SW SI + EYM+AFL Sbjct: 69 PAYQFEEHYTWFGP-VSYHMGVDGISILFVALTAFLMPICIAASWTSITQRVTEYMVAFL 127 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE++VIG F SLD+ LFYIFFE L+PMF+IIG+WGG +R+YAAYKFFLYT GS+ ML Sbjct: 128 LLETLVIGVFTSLDIFLFYIFFEGGLVPMFLIIGIWGGKDRVYAAYKFFLYTLLGSVLML 187 Query: 180 FAIVVMCWEKKTSSIIDLYAM---SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 A++ M + T++I ++ + + FP +Q ++W AFF SFA+K+PM+P HTWLP+AH Sbjct: 188 AAMLYMVNKLGTANIPEMTRLLTETPFPVDVQGFLWFAFFASFAVKMPMWPVHTWLPDAH 247 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 VQAPTAGSV LAGI+LK+GGYG IRF LP+FP AS+ FAP++ LS+IA++Y SLV+ Q Sbjct: 248 VQAPTAGSVMLAGILLKLGGYGFIRFNLPMFPQASEMFAPLVMILSVIAVVYTSLVAFRQ 307 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TDIKKLIAYSS+AHMG+VT+GIF+G + GVEGA+FQM+SHGL+S ALF CVGV+YDR HT Sbjct: 308 TDIKKLIAYSSVAHMGFVTMGIFAGNQLGVEGAIFQMISHGLISGALFLCVGVVYDRWHT 367 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R+I YGGL MP +A + ++FTMAN+GLPGTSGFIGE + + VA++++ G Sbjct: 368 REIAFYGGLTKLMPHFAFIFLLFTMANVGLPGTSGFIGEIATMTGAYDWGTWVALVSASG 427 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 V+ SA+Y+L LY++V+FGV +++++ D+ RE + P+ + T+ GIYP + D Sbjct: 428 VIFSAVYALNLYKRVMFGVVTNDELKKYPDVDAREIAIFTPLIIGTLVLGIYPAFVFDFT 487 Query: 477 SVPLSSIIENYTLKTG 492 + + +++ Y G Sbjct: 488 TASVDGLVKAYQAAIG 503 >gi|254418138|ref|ZP_05031862.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Brevundimonas sp. BAL3] gi|196184315|gb|EDX79291.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Brevundimonas sp. BAL3] Length = 494 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 254/491 (51%), Positives = 344/491 (70%), Gaps = 6/491 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFG----VALGISTINFIFSLFVWSVFDKGRSS 61 LS+VTFLP G I + + + +AL + + S+ + + FD Sbjct: 5 LSLVTFLPLAGALAIFLARLASKSQDAAAPAARWIALITTLVVLAVSVVLVAGFDPSNPG 64 Query: 62 FQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 +Q +E W SYHLGVDGISIL V+LT FL P CIL+SWKS++ EYMIAFLVL Sbjct: 65 YQFVEMVPWFAG-ASYHLGVDGISILFVLLTAFLMPICILASWKSVETRVVEYMIAFLVL 123 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 E++VIG F +LD+ LFYIFFE +L+PMF+IIG+WGG+ RIYAAYKFFLYT GS+ ML A Sbjct: 124 ETLVIGVFTALDLYLFYIFFEGTLVPMFLIIGIWGGANRIYAAYKFFLYTLLGSVLMLLA 183 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ M T+SI +L + P ++Q +W+AFF SFA+K+PM+P HTWLP+AHVQAPT Sbjct: 184 MLWMSHTAGTTSIPELKQYAFDP-AVQPLLWLAFFASFAVKMPMWPVHTWLPDAHVQAPT 242 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LAGI+LK+GGYG I F +P+FP+AS+ F P++F LS+IAI+Y SLV+ QTD+KK Sbjct: 243 AGSVILAGILLKLGGYGFILFNVPMFPVASEMFRPLVFTLSVIAIVYTSLVAWRQTDMKK 302 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSSIAHMG+VT+GIFSG G++GA+FQM+SHGL+S ALF CVGV+YDR+HTR+I Sbjct: 303 LIAYSSIAHMGFVTLGIFSGNYQGMQGAVFQMISHGLISGALFLCVGVVYDRMHTREIAF 362 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGGL MP +A + ++FTMAN+GLPGTSGFIGE L + +Q S A++A+ GV+ SA Sbjct: 363 YGGLTSRMPWFAAIFLMFTMANVGLPGTSGFIGEVLTMTGAYQASTWAALVAASGVIFSA 422 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 +Y+L LYR V+FG K+ + D+ RE + P+ + T++ G++P + D + Sbjct: 423 VYALTLYRAVMFGEITNPKLMTIADIDKRELLLFVPLILGTLWLGVHPAAVLDYTGPAVE 482 Query: 482 SIIENYTLKTG 492 ++ Y + G Sbjct: 483 ALTNAYRVAIG 493 >gi|85708740|ref|ZP_01039806.1| NADH dehydrogenase subunit M [Erythrobacter sp. NAP1] gi|85690274|gb|EAQ30277.1| NADH dehydrogenase subunit M [Erythrobacter sp. NAP1] Length = 513 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 250/484 (51%), Positives = 339/484 (70%), Gaps = 12/484 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+ + +P G LF+ G R +ALG + + F + +W+ ++ G + Sbjct: 1 MDFPILTTMMLVPLAGAIACLFA---GNASRV---IALGATLVTFGLGVMLWANYEIGGA 54 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 +Q E Y + F SY LG+DGI+++L++L+ FL P CIL+SW+ I + EYM AFL Sbjct: 55 QWQFQESYELVAGF-SYALGIDGIALMLIMLSVFLMPICILASWEGITKRVGEYMAAFLF 113 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +E ++IG F + D+ LFYI FEA LIPM++IIGVWGG RIYA+YKFFLYT GS+ ML Sbjct: 114 MEVLMIGTFAAQDIFLFYIMFEAGLIPMYLIIGVWGGDNRIYASYKFFLYTLLGSVLMLV 173 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A+ M E TS I L FP Q W+W+AFF SFA+K+PM+PFHTWLP+AHVQAP Sbjct: 174 AMFWMVAEAGTSYIPALMEY-PFPGGAQTWLWLAFFASFAVKVPMWPFHTWLPDAHVQAP 232 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG++LK+GGYG IRF LP+FP AS FA +F LS+IA++Y SLV++VQ D+K Sbjct: 233 TAGSVILAGVLLKLGGYGFIRFSLPMFPEASADFAWFVFILSMIAVVYTSLVALVQADMK 292 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM VT+G+F+ G+EGAM MLSHGLVS ALF CVGVIYDRLHTR+I Sbjct: 293 KLIAYSSVAHMAIVTVGLFAFNVQGLEGAMIVMLSHGLVSGALFLCVGVIYDRLHTREIE 352 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGGL NMP YA+ ++FTMA++GLPGTSGF+GEFL + ++Q S+ VA++ + G++L Sbjct: 353 RYGGLSINMPYYAIFFLLFTMASIGLPGTSGFVGEFLSLAGIYQTSSLVALICTTGIILG 412 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y L+LYR+V FG K + D+++RE M+ PIA + ++ G+YP ++F P+ Sbjct: 413 AAYMLYLYRRVAFGGQKNPDAAAMSDITVREWAMMAPIAAVVLWMGVYP----ESFLAPM 468 Query: 481 SSII 484 + I Sbjct: 469 RADI 472 >gi|307293258|ref|ZP_07573104.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingobium chlorophenolicum L-1] gi|306881324|gb|EFN12540.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingobium chlorophenolicum L-1] Length = 523 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 248/484 (51%), Positives = 342/484 (70%), Gaps = 13/484 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK--GRSS 61 P LS++ +P G LF+ G +AL + + + + +W FD+ G + Sbjct: 5 PILSLMMAVPMAGAIACLFA-----GANQARWIALLATLADLVLGIILWMNFDQSGGAAQ 59 Query: 62 FQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 +Q EY F ++ LG+DGI++LL+ LT FL P CI +SW SI++ +EYM AFL + Sbjct: 60 WQFQEYAPIFGRF-AWALGIDGIALLLIALTVFLMPICIGASWLSIEKRVQEYMAAFLFM 118 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 E ++IG F + D+ LFYI FEA LIPM++IIG+WGG +RIYA+YKFFLYT GS+ ML A Sbjct: 119 EVLMIGVFTAQDLYLFYIMFEAGLIPMYLIIGIWGGVDRIYASYKFFLYTLLGSVLMLIA 178 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ M E T+ I L A + P IQ W+W+AFF SFA+K+PM+P HTWLP+AHVQAPT Sbjct: 179 MMWMVHEAGTTDIPTLMAYNFDP-HIQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPT 237 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LAG++LKMGGYG IRF LP+FP AS AP+++ LS++A++Y SLV++VQ+D+KK Sbjct: 238 AGSVILAGVLLKMGGYGFIRFSLPMFPEASAQLAPLVWGLSMVAVVYTSLVALVQSDMKK 297 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+AHM VTIG+F+ ++G+EGAM ML HGLVS ALF CVGVIYDRLHTR+I Sbjct: 298 LIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGLVSGALFLCVGVIYDRLHTREIAR 357 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGGL NMP+YAV+ M+FTMA++GLPGTS F+GEFL +M ++Q S+ VA++A+ G++L A Sbjct: 358 YGGLSINMPKYAVLFMLFTMASVGLPGTSNFVGEFLSLMGIYQASSWVALVATTGIILGA 417 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y L+LYR++ +G K + DLS+RE ++ PIA ++ G+YP ++F P+ Sbjct: 418 AYMLYLYRRICYGEQKNADAAAMPDLSMREMWLLAPIAAAVLWMGVYP----ESFLAPMR 473 Query: 482 SIIE 485 I Sbjct: 474 PDIR 477 >gi|326387449|ref|ZP_08209058.1| proton-translocating NADH-quinone oxidoreductase, chain M [Novosphingobium nitrogenifigens DSM 19370] gi|326208105|gb|EGD58913.1| proton-translocating NADH-quinone oxidoreductase, chain M [Novosphingobium nitrogenifigens DSM 19370] Length = 516 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 248/481 (51%), Positives = 345/481 (71%), Gaps = 11/481 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS++ +P +G + L S GR + VAL + I+F + +W+ FD G + +Q Sbjct: 5 PILSLMLLVPLVGAVLCLKS-----GRETARVVALIATLIDFALGVVLWTHFDIGGAQWQ 59 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 E+ F + LG+DGI++LL+VLT FL P CI +SW SI++ EY AFL+ E+ Sbjct: 60 FQEHAALFSGF-DWKLGIDGIALLLIVLTVFLMPICIGASWNSIEKRAGEYYAAFLLTET 118 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F++ D+ LFYI FEA LIPM++IIG+WGG+ERIYA+YKFFLYT GS+ ML A+ Sbjct: 119 LLLGVFVAQDLFLFYIMFEAGLIPMYLIIGIWGGAERIYASYKFFLYTLLGSVLMLIAMF 178 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M E T+ I L A + FP + Q W+++AFF SFA+K+PM+PFHTWLP+AHVQAPT G Sbjct: 179 WMVNEAGTTDIPTLMAYN-FPPAAQTWLFLAFFASFAVKMPMWPFHTWLPDAHVQAPTGG 237 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAG++LKMGGYG IRF LP+FP+AS +FAP+I+ LS+ A++ SL+++VQ D+KKLI Sbjct: 238 SVILAGVLLKMGGYGFIRFSLPMFPVASAHFAPLIWGLSMAAVVITSLIALVQNDMKKLI 297 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM VT+G+F+ + G+EG+M MLSHG+VS ALF VGVIYDRLHTR+I YG Sbjct: 298 AYSSVAHMAIVTVGLFAFNRQGLEGSMIVMLSHGIVSGALFLGVGVIYDRLHTREITRYG 357 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL NMP YA+ M+FTMA++GLPGTSGF+GEFL ++ V+Q S+ VA++A+ G++L A Y Sbjct: 358 GLAVNMPYYALFFMLFTMASIGLPGTSGFVGEFLSLLGVYQESSWVALIATTGIILGAAY 417 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 L+LYR+V+FG +L DL RE M+ P+A + ++ G+YP ++F P+ Sbjct: 418 MLYLYRRVIFGEQANADAAKLPDLDFREWAMMIPLAAVVLWMGVYP----ESFLAPMRKD 473 Query: 484 I 484 I Sbjct: 474 I 474 >gi|304321904|ref|YP_003855547.1| NADH dehydrogenase subunit M [Parvularcula bermudensis HTCC2503] gi|303300806|gb|ADM10405.1| NADH dehydrogenase subunit M [Parvularcula bermudensis HTCC2503] Length = 553 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 255/522 (48%), Positives = 352/522 (67%), Gaps = 41/522 (7%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYL-------GCGRRSFFGVALGISTINFIFSLFVWSV 54 ++P L+I+TFLP +GV I+ G R + + VAL + F FS +V+ Sbjct: 8 DMPLLTILTFLPLVGVAFIMLRQATSRPDERDGAARAAKW-VALATTLFTFAFSGYVYLQ 66 Query: 55 FDKGRSSFQMIEYYHW---------------IDYFC-----SYHLGVDGISILLVVLTTF 94 FD+ +Q++E W +D C +Y +GVDGISIL V+LTTF Sbjct: 67 FDQSAQGYQLVEQTAWLTGCAEASSAGVDQAVDETCLPQGITYKMGVDGISILFVLLTTF 126 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 + P IL+ W+SI EYM+AFLVLE+++IG F +LD+LLFY+FFEASLIPMF+IIG+ Sbjct: 127 IMPIAILAGWRSISSRVAEYMVAFLVLETLIIGVFCALDLLLFYVFFEASLIPMFLIIGI 186 Query: 155 WGG-----------SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF 203 WG RIYAA+KFFLYT FGS+ +L A++ M + T+ ++ L +S F Sbjct: 187 WGSKGERSIFGLTVQNRIYAAFKFFLYTLFGSLLLLLALIYMYLQTGTTDVVALQQVS-F 245 Query: 204 PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFL 263 Q W+W+AFF SFA+K+PM+P HTWLP+AHVQAPTAGS+ LA I+LKMGGYG +RF Sbjct: 246 GDGAQKWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSIVLAAILLKMGGYGFLRFS 305 Query: 264 LPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMK 323 LP+FP AS YFAP++F LS+IAI+Y SLV+ Q D+KKLIAYSS+AHMG+VT+GIF+ Sbjct: 306 LPMFPDASLYFAPLVFTLSVIAILYTSLVAFAQEDMKKLIAYSSVAHMGFVTMGIFTMTD 365 Query: 324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMAN 383 G+EGA+FQMLSHG +S ALF CVG++YDRLHTR+I AYGGLV +M +A ++F+MAN Sbjct: 366 QGLEGALFQMLSHGFISGALFLCVGIVYDRLHTREISAYGGLVGHMKWFAFFFLLFSMAN 425 Query: 384 MGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ 443 +GLPG SGF+GE L ++ FQ + VA L++ G+VL+A Y L LYR+V FG +V+ Sbjct: 426 VGLPGLSGFVGEILTMVGAFQVNTWVAALSALGMVLAASYGLRLYREVAFGTVTNPEVKT 485 Query: 444 LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + DL RE ++ +A + ++ G++P P F P + +++ Sbjct: 486 MPDLDRRELSLLTVLAAMALYLGVHPSPTLAVFR-PATELVQ 526 >gi|332185891|ref|ZP_08387638.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Sphingomonas sp. S17] gi|332014249|gb|EGI56307.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Sphingomonas sp. S17] Length = 516 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 248/484 (51%), Positives = 340/484 (70%), Gaps = 10/484 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS++ +P + LF + G +AL + I+F + +W+ FD G + +Q Sbjct: 5 PILSVMLAVPAVAAIACLFLNANGARM-----LALAATLIDFALGIVLWTQFDVGGAQWQ 59 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E+ I + LG+DG ++LL++L+ FL P CI +SW++I + EYM FL E Sbjct: 60 FVEHAPGIFGPFGWSLGIDGFALLLIMLSVFLMPICIGASWRAIDKRVPEYMGLFLFTEV 119 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F + D+ LFY+FFEA LIPM++IIG+WGG+ RIYA+YKFFLYT GS+ M A++ Sbjct: 120 LMIGTFAAQDLFLFYVFFEAGLIPMYLIIGIWGGANRIYASYKFFLYTLLGSLLMFVAML 179 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M T+SI L A FP S+Q W+WIAFF SFA+K+PM+P HTWLP+AHVQAPTAG Sbjct: 180 YMARTAGTTSIPALLAY-DFPASVQTWLWIAFFASFAVKMPMWPVHTWLPDAHVQAPTAG 238 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAG++LK+GGYG +RFLLP+FP AS +IF LS +A+IYASLV++VQ+D+KKLI Sbjct: 239 SVILAGVLLKLGGYGFLRFLLPMFPEASGQLTWLIFALSAVAVIYASLVALVQSDMKKLI 298 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM VTIG+++ + G+EGAM MLSHGLVS ALF CVGVIYDRLHTR+I YG Sbjct: 299 AYSSVAHMAIVTIGLYAFNQQGIEGAMIMMLSHGLVSGALFLCVGVIYDRLHTREIARYG 358 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL NMP+YAV+ + FTMA++GLPGTSGF+ EFL +M +Q S A+L + G++L A Y Sbjct: 359 GLSINMPKYAVLFLFFTMASIGLPGTSGFVAEFLSLMGTYQVSTWTALLCTTGIILGAAY 418 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP----VPIRDTFSVP 479 L+LYR+V +G K ++V + DLS RE ++ PIA +T++ G+YP P+R ++ Sbjct: 419 MLYLYRRVAYGEIKSDEVAAMPDLSARELWLLAPIAAVTLWMGVYPESFLAPMRKDVTIL 478 Query: 480 LSSI 483 L I Sbjct: 479 LQRI 482 >gi|114771831|ref|ZP_01449224.1| NADH dehydrogenase subunit M [alpha proteobacterium HTCC2255] gi|114547647|gb|EAU50538.1| NADH dehydrogenase subunit M [alpha proteobacterium HTCC2255] Length = 513 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 251/504 (49%), Positives = 349/504 (69%), Gaps = 21/504 (4%) Query: 5 FLSIVTFLPFLGVFV--ILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LSIV FLP L + ++ +R+ +AL + F+ SL + + FD +SF Sbjct: 4 LLSIVIFLPSLAALILAVILRGEDELSQRNAKILALVATLATFVISLPLLTQFDPTNTSF 63 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q +E Y+W+ Y +G+DGISIL V+LTTFL P I + W ++ +EYMI FL+LE Sbjct: 64 QFVEEYNWLAGL-KYKVGLDGISILFVMLTTFLMPIVIGACW-TVSSRVKEYMIMFLLLE 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +M++ F SLD++LFY+ FEA LIPMF+I+G+WGG +RIYAA+K FLYT GS+ ML AI Sbjct: 122 TMMLAVFSSLDIILFYVVFEAGLIPMFLIVGIWGGKDRIYAAFKLFLYTLLGSVLMLIAI 181 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFS--------------IQYWMWIAFFCSFAIKIPMFPF 228 + M +E T+ D+ + + FS IQ +++ FF SFA+K+PM+P Sbjct: 182 IYMWFEAGTT---DIPTLMQHQFSSENMIIFGITIIGGIQTLLFLGFFASFAVKMPMWPV 238 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 HTWLP+AHVQAPTAGSV LA I+LKMGGYG +RF LP+FP+ S A + LS+IAIIY Sbjct: 239 HTWLPDAHVQAPTAGSVVLAAILLKMGGYGFLRFSLPMFPVGSDVMATFVMTLSVIAIIY 298 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 SLV++VQ D+KKLIAYSS+AHMG+VT+GIF+ K G++GA+FQMLSHG +S+ALF VG Sbjct: 299 TSLVALVQEDMKKLIAYSSVAHMGFVTMGIFALNKQGLDGAIFQMLSHGFISAALFLGVG 358 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 VIYDR+HTRDI AYGGLV MP +A++ M+FTMAN+GLPGTSGF+GEFL + + F+ + Sbjct: 359 VIYDRMHTRDIDAYGGLVIRMPVFALIFMLFTMANVGLPGTSGFVGEFLTLTAAFKANTW 418 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 +A A+ GV+LSA Y+LWLYR+VVFG E ++ + D+ +RE+ ++ P+ ++T+ GIY Sbjct: 419 IAFGATTGVILSAGYALWLYRRVVFGDLVKESLKGISDMDVREKLLMTPLIIMTILLGIY 478 Query: 469 PVPIRDTFSVPLSSIIENYTLKTG 492 P I D +++++E G Sbjct: 479 PALILDLIGPSVNALLEQVHAAQG 502 >gi|254294090|ref|YP_003060113.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hirschia baltica ATCC 49814] gi|254042621|gb|ACT59416.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hirschia baltica ATCC 49814] Length = 493 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 257/479 (53%), Positives = 347/479 (72%), Gaps = 9/479 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV---ALGISTINFIFSLFVWSVFDKG 58 + P LS++TFLP +G +IL + G +S V AL ++ F+ SL+ S F+ Sbjct: 3 SFPILSMITFLPLVGALIILLTRA-AVGEQSRETVRLAALVVTLATFVLSLWAMSEFNPS 61 Query: 59 RSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 +Q+IE W SY LGVDG+S+LL++LTTFL P C+L+SW +I+ F EYMIAF Sbjct: 62 APGYQLIEDVSWFGQ-ISYKLGVDGMSMLLILLTTFLMPICVLASWNNIKIRFAEYMIAF 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LVLE++++G F ++D++LFYIFFE LIPMF+IIG+WGG+ R+YAA+KFFLYT GS+ + Sbjct: 121 LVLETLMLGVFCAMDLVLFYIFFEGGLIPMFIIIGIWGGANRLYAAFKFFLYTLLGSLAL 180 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A++ + T+ I L + P +Q W+W+AFF SFA+K+PMFP HTWLP+AHVQ Sbjct: 181 LAALIYIYVTVGTTDIPTLQQHAFAP-EVQTWLWLAFFASFAVKLPMFPVHTWLPDAHVQ 239 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAG++LKMGGYG +RF LP+FP AS F P++F LS+IA+IYASLV+ QTD Sbjct: 240 APTAGSVILAGVLLKMGGYGMLRFSLPMFPDASVLFQPLVFTLSVIAVIYASLVAFRQTD 299 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKLIAYSS+AHMG VT+GIF+ + G++GA+FQM SHGL+SSALF CVGV+YDRLHTRD Sbjct: 300 MKKLIAYSSVAHMGLVTLGIFAFNEEGIQGAIFQMFSHGLISSALFLCVGVVYDRLHTRD 359 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I AYGGLVH MP YA + M FTMAN+GLPGTSGFIGE + ++ F+ + A A+ G++ Sbjct: 360 IAAYGGLVHRMPIYAALFMFFTMANVGLPGTSGFIGEIVSMVGGFKANPWAAAGAAIGMI 419 Query: 419 LSALYSLWLYRKVVFGVSK---CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 LSA+Y L L+R VFGV K EK + D++ E ++ +A+ T+ G++P + D Sbjct: 420 LSAVYMLTLFRATVFGVIKNPELEKPEIAYDVTFIEGAILAILAIGTLLLGVFPSLVFD 478 >gi|296536144|ref|ZP_06898272.1| NADH-quinone oxidoreductase subunit M [Roseomonas cervicalis ATCC 49957] gi|296263515|gb|EFH10012.1| NADH-quinone oxidoreductase subunit M [Roseomonas cervicalis ATCC 49957] Length = 503 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 245/452 (54%), Positives = 332/452 (73%), Gaps = 2/452 (0%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 AL S I F SL +W FDK + FQ +E W+ F YH+GVDGIS+L V+L+T L Sbjct: 41 ALWTSLITFGLSLILWFRFDKSTADFQFVEQLSWMPEFGLGYHMGVDGISVLFVLLSTAL 100 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P CIL+SW+++Q REYM+AFLVLE+M++G F +LDM+LFYIFFE LIPMF+IIGVW Sbjct: 101 VPLCILASWEAVQNRVREYMVAFLVLETMMVGMFSTLDMVLFYIFFEGVLIPMFLIIGVW 160 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF 215 GG+ R+YAAYK FLYT GS+ ML A++++ ++ TS I L+ + + P +Q W+++AF Sbjct: 161 GGARRVYAAYKLFLYTLLGSLLMLLAMLLLWYQAGTSYIPALFEL-RIPEHVQTWLFLAF 219 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 SFA+K+PM+P HTWLP+AHV+APTAGSV LAG++LKMG YG +RF LPL P A+++FA Sbjct: 220 LASFAVKVPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGAYGFLRFSLPLLPQATEFFA 279 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 P+IF LS+IA++Y SLV++ Q D+KKLIAYSS+AHMG VTIGIF+ G+ GA+FQMLS Sbjct: 280 PLIFALSVIAVVYTSLVALAQEDMKKLIAYSSVAHMGIVTIGIFTLNHQGISGAIFQMLS 339 Query: 336 HGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGE 395 HG+VS ALF CVGV+YDR+H+RDI YGG+ MP YA+V M+FTM ++ LPGT+GF GE Sbjct: 340 HGVVSGALFLCVGVLYDRVHSRDILRYGGVAKVMPSYAMVFMLFTMGSVALPGTAGFPGE 399 Query: 396 FLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 FLVI+ + + VA+ A G++L A Y L+LYR+VVF E ++ L DLS RE Sbjct: 400 FLVIVGAWNANPWVALGAGLGMILGAGYMLYLYRRVVFSKITREDLKALLDLSPREYVTF 459 Query: 456 YPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 P+ +LT++ GIYP F +++++ + Sbjct: 460 APLILLTLWMGIYPSSFLSFFEASVAALVTRH 491 >gi|209964538|ref|YP_002297453.1| NADH-quinone oxidoreductase chain M [Rhodospirillum centenum SW] gi|209958004|gb|ACI98640.1| NADH-quinone oxidoreductase chain M [Rhodospirillum centenum SW] Length = 516 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 245/490 (50%), Positives = 339/490 (69%), Gaps = 7/490 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P L+I TFLP +G IL R+ VAL S I F+ SLF+ + FD Sbjct: 3 DWPILTITTFLPLVGALSILMIRGEQELVDRNAKAVALWTSLITFVISLFILANFDPSNP 62 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQM+E Y WI F +Y GVDGISI V+ +TFLTP C+L+SW +I + +E+MIA L Sbjct: 63 GFQMMEEYRWIPSFNIAYIKGVDGISIWFVLASTFLTPICVLASWTTIDKRVKEFMIALL 122 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VLE+M++G F +LD +LFY+FFE L+PMF+IIGVWGG RIYAAYKFFLYTF GS+ ML Sbjct: 123 VLETMMVGMFTALDFVLFYLFFEGVLLPMFLIIGVWGGPGRIYAAYKFFLYTFIGSVLML 182 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPF--SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 AI+ M T +D+ M PF ++Q W+W+ FF +FA+K P++P HTWLP AHV Sbjct: 183 LAILAMYLVAGT---MDMRVMVDHPFASTLQLWLWVGFFIAFAVKTPIWPLHTWLPFAHV 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAG+MLKMGGYG IR + + P A+ +F +F LS++AIIY SLV++ QT Sbjct: 240 EAPTAGSVMLAGVMLKMGGYGLIRVNVQMLPEATFFFTDFVFVLSVVAIIYTSLVALAQT 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KK+IAYSS+AHMGYVT+GIF+ + G++GA+FQMLSH +VS+ALF C+G Y +LHTR Sbjct: 300 DMKKMIAYSSVAHMGYVTMGIFTMTQQGLDGAIFQMLSHTIVSAALFLCIGFAYAQLHTR 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I YGG+ N+PRYA V MVF +A++GLPGTSGF+GEFL ++ FQ + VA+ A+ G+ Sbjct: 360 EIVKYGGMAQNLPRYAFVFMVFMLASVGLPGTSGFVGEFLTMLGAFQVNTWVAMFAATGL 419 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 VL A Y L LYR++ FG + V+ ++DL + P+ + + G++P +D ++ Sbjct: 420 VLGAAYMLLLYRRLFFGKLDKDGVKAMRDLRWTDTAYFAPLVAIVLIMGVFPASFKDVYA 479 Query: 478 VPLSSIIENY 487 + ++ ++ Sbjct: 480 PTVEKVLLDH 489 >gi|23013095|ref|ZP_00053040.1| COG1008: NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Magnetospirillum magnetotacticum MS-1] Length = 420 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 241/415 (58%), Positives = 313/415 (75%), Gaps = 3/415 (0%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS+ TFLP G +F++ R+ VAL S F+ SLF+ + F+ Sbjct: 3 DWPLLSLTTFLPLAGALFILTIRGETEVVARNARNVALLTSIATFVVSLFILAKFNGASP 62 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ+ E W +Y +GVDGIS+ V+L+TFLTP CIL+++ S+++ +EYM+AF+ Sbjct: 63 DFQLKETALWFPGTTVTYSMGVDGISMWFVLLSTFLTPICILAAYGSVEKRVKEYMVAFM 122 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE+M+IG F +LD++LFYIFFEA LIPMF+IIGVWGG R+YAA+KFFLYT GS+ ML Sbjct: 123 ILETMMIGMFCALDLVLFYIFFEAVLIPMFIIIGVWGGQRRVYAAFKFFLYTLLGSVLML 182 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++VM ++ T+ I L A S FPF +Q W+W+AFF SFA+K+PM+P HTWLP+AHV+A Sbjct: 183 IAMLVMYFDAHTTDIPSLMAHS-FPFKMQLWLWLAFFASFAVKVPMWPVHTWLPDAHVEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT GSV LAG++LKMG YG IRF +P+ P AS YF P+I+ LS++A+IY SLV++VQ D+ Sbjct: 242 PTGGSVILAGVLLKMGAYGFIRFSIPMLPDASVYFTPLIYTLSIVAVIYTSLVALVQDDM 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMGYVTIGIFS GVEGA+FQMLSHG+V+SALF CVGVIYDR+HTR+I Sbjct: 302 KKLIAYSSVAHMGYVTIGIFSMTTQGVEGAVFQMLSHGIVASALFLCVGVIYDRMHTREI 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 YGGL MP YAVV MVFTMA++GLPGT+GF+GEFLV+M VFQ VA A+ Sbjct: 362 ARYGGLASRMPIYAVVFMVFTMASVGLPGTAGFVGEFLVLMGVFQVHTWVAFFAA 416 >gi|11466552|ref|NP_044801.1| NADH dehydrogenase subunit 4 [Reclinomonas americana] gi|2258382|gb|AAD11916.1| NADH dehydrogenase subunit 4 [Reclinomonas americana] Length = 493 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 244/483 (50%), Positives = 335/483 (69%), Gaps = 5/483 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L + P LGVF++ G V+L S + FI SLF+W FDK S FQ + Sbjct: 11 LPTIILTPILGVFILFLIP--GWKTSLIKQVSLYASLLTFILSLFLWIFFDKSTSKFQFV 68 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 +WI+ + LG+DGIS+ LV+LTTFL P CIL+ W+SI+ N +EYMI FL+L+++ Sbjct: 69 YEVNWIETLNIHFSLGIDGISLFLVILTTFLIPLCILTGWESIKHNIKEYMICFLLLDAL 128 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIV 183 +I F LD++LFYIFFE+ LIPMF++IGVWG ER + AAY FLYTFFGS+ ML AI+ Sbjct: 129 LIMIFCVLDLVLFYIFFESVLIPMFIVIGVWGSRERKVRAAYMLFLYTFFGSLLMLIAIM 188 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 V+ ++ T+ I + ++F Q +W+AFF SFAIKIPM PFH WLP AHV+APTAG Sbjct: 189 VIYFDAGTTD-IQVLLTTEFSQERQKLLWLAFFISFAIKIPMVPFHVWLPEAHVEAPTAG 247 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAG++LK+GGYG +RF +P+FP A+ YF P+++ +S+IAIIY SL ++ Q D+K++I Sbjct: 248 SVLLAGVLLKLGGYGILRFSIPMFPEATVYFTPLVYTMSIIAIIYTSLTTLRQIDLKRII 307 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM +VTIG+FS G+EG++ MLSHG+VSSALF C+GV+YDR TR + Y Sbjct: 308 AYSSVAHMNFVTIGMFSLNMQGLEGSILLMLSHGIVSSALFLCIGVLYDRHKTRLLKYYS 367 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+V MP +A + M+FTMAN+ LPGTS F+GEFLV++ F ++ TVA A+ G++L A Y Sbjct: 368 GVVQTMPIFATLFMLFTMANISLPGTSSFVGEFLVLIGAFNSNTTVAFFATTGIILGAAY 427 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLWLY +V FG K E +Q D++ RE + P+ +L GIYP D V + ++ Sbjct: 428 SLWLYNRVAFGNLKIEYIQFFYDVTRREMLVFTPLVILVFVMGIYPEIFLDAMHVSVGNL 487 Query: 484 IEN 486 IE+ Sbjct: 488 IEH 490 >gi|103486783|ref|YP_616344.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingopyxis alaskensis RB2256] gi|98976860|gb|ABF53011.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingopyxis alaskensis RB2256] Length = 517 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 232/487 (47%), Positives = 343/487 (70%), Gaps = 11/487 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS++ +P + + L++ G R+ +AL + I+F + +W+ FD G + +Q Sbjct: 5 PILSLMLAVPLIAAILCLYA-----GDRNARVIALAATLIDFALGIVLWASFDIGGAQWQ 59 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 E F + LG+DG++++L++L+ FL P CIL+SW++I+ YM FL++E Sbjct: 60 FTERADLFGRF-QWALGIDGMALMLIMLSVFLMPLCILASWEAIKSRVGLYMAMFLIMEV 118 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F++ D+LLFYIFFEA LIPM+ IIG+WGG+ R YAA+KFFLYT GS+ ML A++ Sbjct: 119 VMIGVFMAQDLLLFYIFFEAGLIPMYFIIGIWGGANRKYAAFKFFLYTLLGSVLMLIAMI 178 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M E T+ I L FP +Q W+W+AFF S A+K+PM+P HTWLP+AHVQAPTAG Sbjct: 179 AMIAEAGTTDIPTLLNYD-FPVEMQTWLWLAFFASLAVKMPMWPVHTWLPDAHVQAPTAG 237 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LAG++LK+G YG +RF++P+FP AS ++F LS++A++Y SLV++VQ D+KKLI Sbjct: 238 SMILAGVLLKLGAYGFLRFMMPMFPDASAQLMWLVFGLSMVAVVYTSLVALVQNDMKKLI 297 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM VT G+F+ + G+EGA+ MLSHG+VS+ALFFCVGVIYDRLHTR+I YG Sbjct: 298 AYSSVAHMAIVTAGLFAFNQQGIEGALIIMLSHGVVSAALFFCVGVIYDRLHTREIDRYG 357 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL NMP YA+ M+FTMA++GLPGTSGF+GEFL ++ +++ S+ VA + + G++L A Y Sbjct: 358 GLAVNMPAYALFFMLFTMASIGLPGTSGFVGEFLSLLGIYEASSVVAFVCTTGIILGAAY 417 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 L+LYR+VVFG + V+ + DL++RE ++ P+A + ++ G+YP ++F P+ Sbjct: 418 MLYLYRRVVFGELTKDDVKAMPDLNVREWAIMAPLAAVALWMGVYP----ESFLAPMRGD 473 Query: 484 IENYTLK 490 + + Sbjct: 474 VTTVVAR 480 >gi|294011321|ref|YP_003544781.1| NADH dehydrogenase I chain M [Sphingobium japonicum UT26S] gi|292674651|dbj|BAI96169.1| NADH dehydrogenase I chain M [Sphingobium japonicum UT26S] Length = 523 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 246/484 (50%), Positives = 339/484 (70%), Gaps = 13/484 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK--GRSS 61 P LS++ +P G LF+ G +AL + + + +W FD+ + Sbjct: 5 PILSLMMAVPMAGAIACLFA-----GANQARWIALLATLADLALGVILWMNFDQSGAAAQ 59 Query: 62 FQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 +Q EY F ++ LG+DGI++LL+ LT FL P CI +SW +I++ EYM AFL + Sbjct: 60 WQFQEYAPIFGRF-AWALGIDGIALLLIALTVFLMPICIGASWIAIEKRVPEYMAAFLFM 118 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 E ++IG F + D+ LFYI FEA LIPM++IIG+WGG++RIYA+YKFFLYT GS+ ML A Sbjct: 119 EVLMIGVFTAQDLYLFYIMFEAGLIPMYLIIGIWGGADRIYASYKFFLYTLLGSVLMLIA 178 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ M E T+ I L A + P IQ W+W+AFF SFA+K+PM+P HTWLP+AHVQAPT Sbjct: 179 MMWMVHEAGTTDIPTLMAYNFDP-HIQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPT 237 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LAG++LKMGGYG IRF LP+FP AS AP+++ LS++A++Y SLV++VQ+D+KK Sbjct: 238 AGSVILAGVLLKMGGYGFIRFSLPMFPEASAQLAPLVWGLSMVAVVYTSLVALVQSDMKK 297 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+AHM VTIG+F+ ++G+EGAM ML HGLVS ALF CVGVIYDRLHTR+I Sbjct: 298 LIAYSSVAHMAIVTIGLFAFNQAGLEGAMMVMLGHGLVSGALFLCVGVIYDRLHTREISR 357 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGGL NMP+YAV+ M+FTMA++GLPGTS F+GEFL +M ++Q S+ VA++A+ G++L A Sbjct: 358 YGGLSINMPKYAVLFMLFTMASVGLPGTSNFVGEFLSLMGIYQASSWVALVATTGIILGA 417 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y L+LYR++ +G K + DLS RE ++ PIA ++ G+YP ++F P+ Sbjct: 418 AYMLYLYRRICYGEQKNADAAAMPDLSAREIWLLAPIAAAVLWMGVYP----ESFLAPMR 473 Query: 482 SIIE 485 I Sbjct: 474 PDIR 477 >gi|85374148|ref|YP_458210.1| NADH-quinone oxidoreductase chain M [Erythrobacter litoralis HTCC2594] gi|84787231|gb|ABC63413.1| NADH-quinone oxidoreductase chain M [Erythrobacter litoralis HTCC2594] Length = 515 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 242/451 (53%), Positives = 319/451 (70%), Gaps = 10/451 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFC--SYHLGVDGISILLVVLTT 93 VAL + IN + +W+ F+ G +Q E D F Y LGVDGI++LL++L+ Sbjct: 32 VALVATMINLALGIALWAGFEIGGPQWQFTER---ADLFAGFDYALGVDGIAMLLIMLSV 88 Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 FL P C+L+SW++IQ+ EYM A L+ E ++IG F + D+ LFYIFFEA LIPM+++IG Sbjct: 89 FLMPICVLASWEAIQKRVGEYMAALLLTEMLMIGVFAAQDLFLFYIFFEAGLIPMYLLIG 148 Query: 154 VWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 +WGG++RIYAA+KFFLYT GS+ ML A+ M E TS I L P Q W+W+ Sbjct: 149 IWGGADRIYAAFKFFLYTLIGSVLMLVAMFWMVNEAGTSDIPTLMQYDFAP-EAQTWLWL 207 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF SFA+K+PMFPFHTWLP AHVQAPTAGSV LAG++LK+GGYG IRF LP+FP AS Sbjct: 208 AFFASFAVKVPMFPFHTWLPAAHVQAPTAGSVILAGVLLKLGGYGFIRFSLPMFPEASAQ 267 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F ++F LS+IA+IY SLV++VQ D+KKLIAYSS+AHM VT +F+ G+EGAM M Sbjct: 268 FTWLVFALSMIAVIYTSLVALVQEDMKKLIAYSSVAHMAIVTAALFAFNVQGLEGAMIVM 327 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLVS ALF CVG+IYDRLHTR+I YGGL NMP+YA+ ++FTMA++GLPGTSGF+ Sbjct: 328 LSHGLVSGALFLCVGIIYDRLHTREIGRYGGLAINMPKYALFFLLFTMASIGLPGTSGFV 387 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFL + +Q S++V + + G++L A Y L+LYR+VVFG E +KDL+LRE Sbjct: 388 AEFLSLAGTYQVSSSVTLFLTTGIILGAGYMLYLYRRVVFGTQVNEDAAAMKDLNLREWA 447 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 M+ PIA ++ G+YP ++F P+ I Sbjct: 448 MLGPIAAAVLWMGVYP----ESFLAPMRQDI 474 >gi|296283852|ref|ZP_06861850.1| NADH-quinone oxidoreductase chain M [Citromicrobium bathyomarinum JL354] Length = 532 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 240/479 (50%), Positives = 333/479 (69%), Gaps = 11/479 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS++ +P +G + +F + VAL + I+ + + +W FD G + +Q Sbjct: 5 PILSLMLLVPLVGAVLCMF-----VNASTARWVALIATLIDLVLGIMLWLNFDIGGAQWQ 59 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 E + F Y LG+DGI+++L++L+ FL P CIL+SW S+ + EYM AFL++E Sbjct: 60 FTERANLFAGF-EYALGIDGIALMLIMLSVFLMPICILASWTSVTKRVGEYMAAFLIMEL 118 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F + D+LLFYIFFEA LIPM++IIG+WGG +RIYA++KFFLYT GS+ ML A++ Sbjct: 119 LMIGVFAAQDILLFYIFFEAGLIPMYLIIGIWGGDDRIYASFKFFLYTLLGSVVMLIAML 178 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M E TS +I + FP Q W+W+AFF SFA+K+PM+P HTWLP AHVQAPTAG Sbjct: 179 WMIQEAGTS-LIPVLLQYDFPPEAQTWLWLAFFASFAVKMPMWPVHTWLPAAHVQAPTAG 237 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAG++LK+GGYG IRF LP+FP AS F ++F LS+IA++ SL+++VQ D+KKLI Sbjct: 238 SVILAGVLLKLGGYGFIRFSLPMFPEASAQFVWLVFGLSMIAVVVTSLIALVQHDMKKLI 297 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM VT G+F+ G+EGAM MLSHGLVS ALF CVGVIYDRLHTR+I YG Sbjct: 298 AYSSVAHMAIVTAGLFAFNSQGIEGAMVMMLSHGLVSGALFLCVGVIYDRLHTREIARYG 357 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL NMPRYA+ ++FTMA++GLPGTSGF+ EF+ + ++Q S+T + + G++L A Y Sbjct: 358 GLATNMPRYALFFLLFTMASIGLPGTSGFVAEFISLAGIYQMSSTTTFVLTTGIILGAGY 417 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 L+LYR+VVFG K + D++ RE M+ P+A ++ G+YP ++F P+ S Sbjct: 418 MLYLYRRVVFGEQKNADAAAMPDMNAREWLMLAPVAAAVLWMGVYP----ESFLAPMRS 472 >gi|148555904|ref|YP_001263486.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingomonas wittichii RW1] gi|148501094|gb|ABQ69348.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingomonas wittichii RW1] Length = 508 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 232/487 (47%), Positives = 343/487 (70%), Gaps = 11/487 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M P L+++ LP + LF+ G ++ +AL + N + +W ++ G + Sbjct: 1 MGFPILTVMIALPLVAALACLFA-----GAKAARWIALAATLANLGLGILLWHCYEIGGA 55 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 +Q E+ F ++ LG+DGI++LL+VL+ FL P CI +SW++I++ EYM AFL+ Sbjct: 56 QWQFTEHVALFGRF-AWALGIDGIALLLIVLSVFLMPICIAASWEAIEKRVPEYMAAFLL 114 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +E++++G F + D+ LFYIFFEA LIPM++IIG+WGG++RIYA+YKFFLYT GS+ ML Sbjct: 115 METLMVGVFAAQDLFLFYIFFEAGLIPMYLIIGIWGGADRIYASYKFFLYTLLGSVLMLI 174 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ M E T+ I L A FP Q W+++AFF SFA+K+PM+P HTWLP+AHVQAP Sbjct: 175 AMLWMVSEAGTTFIPALMAY-DFPPEAQTWLFLAFFASFAVKMPMWPVHTWLPDAHVQAP 233 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG++LKMGGYG +RF LP+FP+AS ++ LS++AI+ SL+++VQ D+K Sbjct: 234 TAGSVILAGVLLKMGGYGFVRFSLPMFPVASAELMWLVMGLSMVAIVVTSLIALVQEDMK 293 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM +VTIG+F+ + G+EGA+ ML HGLVS ALF CVGVIYDR+HTR+I Sbjct: 294 KLIAYSSVAHMAFVTIGLFAFNRQGIEGALMVMLGHGLVSGALFLCVGVIYDRMHTREIV 353 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGGL +NMP+YA++ ++FTMA++GLPGTS F+GEFL ++ +Q S+ VA +A+ G++ Sbjct: 354 RYGGLSNNMPKYAMLFLLFTMASVGLPGTSNFVGEFLSLVGAYQISSWVAFVATTGIITG 413 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP----VPIRDTF 476 A Y L+LY ++ +G ++ + + DLS RE ++ PIA+ ++ G+YP P+R+ Sbjct: 414 AAYMLYLYARIAYGAARTPEAAAMPDLSARELAILAPIALAVLWMGVYPESFLAPMRNDV 473 Query: 477 SVPLSSI 483 L+ + Sbjct: 474 GAVLARL 480 >gi|149184623|ref|ZP_01862941.1| NADH-quinone oxidoreductase chain M [Erythrobacter sp. SD-21] gi|148831943|gb|EDL50376.1| NADH-quinone oxidoreductase chain M [Erythrobacter sp. SD-21] Length = 514 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 245/494 (49%), Positives = 329/494 (66%), Gaps = 14/494 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M P LS++ +P + LF + S VAL + IN + +W +D G + Sbjct: 1 MEFPILSLMLAVPLVAAIACLFLT-----ASSARMVALFATLINLALGVILWLNYDIGGA 55 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 +Q E F Y LG+DGI+++L++L+ FL P CIL+SW I + EYM AFL+ Sbjct: 56 QWQFTERAQLFAGF-EYALGIDGIALMLIMLSVFLMPICILASWDGITKRVGEYMAAFLL 114 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +E ++IG F + D+ LFYIFFEA LIPM++IIGVWGG RIYA+YKFFLYT GS+ ML Sbjct: 115 MEVLMIGVFAAQDLFLFYIFFEAGLIPMYLIIGVWGGDNRIYASYKFFLYTLLGSVLMLI 174 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ M E TS I L FP Q W+W+AFF SFA+K+PM+P HTWLP+AHVQAP Sbjct: 175 AMLWMVNEAGTSDIPTLM-QYDFPVGAQLWLWLAFFASFAVKMPMWPVHTWLPDAHVQAP 233 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LAG++LK+GGYG IRF LP+FP AS A ++F LS++A+IY SLV++VQ D+K Sbjct: 234 TAGSVILAGVLLKLGGYGFIRFSLPMFPDASADLAWLVFALSMVAVIYTSLVALVQHDMK 293 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+AHM V +G+F+ G+EGAM ML HGLVS ALF CVGVIYDRLHTR+I Sbjct: 294 KLIAYSSVAHMAIVMVGLFAFNVQGLEGAMMVMLGHGLVSGALFLCVGVIYDRLHTREIA 353 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGGL NMP+YA+ ++FTMA++GLPGTS F+GEFL + +++ S V ++ + G++L Sbjct: 354 RYGGLSINMPKYALFFLLFTMASVGLPGTSNFVGEFLALAGIYKVSTFVTLVCTTGIILG 413 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP----VPIRD-- 474 A Y L+LYR+V FG + + DL+ RE M+ PIA ++ G+YP P+R Sbjct: 414 AAYMLYLYRRVAFGEQRNADAAAMTDLNAREWAMLAPIAAAVLWMGVYPESFLAPMRQDI 473 Query: 475 -TFSVPLSSIIENY 487 L+S+ Y Sbjct: 474 AALETRLASVAPQY 487 >gi|87200302|ref|YP_497559.1| proton-translocating NADH-quinone oxidoreductase, chain M [Novosphingobium aromaticivorans DSM 12444] gi|87135983|gb|ABD26725.1| NADH dehydrogenase subunit M [Novosphingobium aromaticivorans DSM 12444] Length = 516 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 240/487 (49%), Positives = 332/487 (68%), Gaps = 11/487 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS++ +P L R VAL + ++ + +W+ +D G + +Q Sbjct: 10 PILSLMLLVPLAAAVACLV-----VPREQARTVALVATLVDLVLGAVLWANYDVGGAQWQ 64 Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 E F ++ LG+DGI++LL+ LT FL P CI +SW SI + EY AFL++E+ Sbjct: 65 FTENAPLFAGF-AWKLGIDGIALLLIALTVFLMPICIGASWVSIDKRQGEYYAAFLLMET 123 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F + D+ LFYI FEA LIPM++IIGVWGG++RIYA+YKFFLYT GS+ ML A+ Sbjct: 124 LMIGVFAAQDLFLFYIMFEAGLIPMYLIIGVWGGADRIYASYKFFLYTLLGSVLMLIAMF 183 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M E T+ I L + FP Q W+W+AFF SFA+K+PM+P HTWLP+AHVQAPTAG Sbjct: 184 WMVNEAGTTDIPTLM-VYNFPVKAQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAG 242 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAG++LKMGGYG IRF LP+FP AS FAP++F LS+ A++ SL+++VQ D+KKLI Sbjct: 243 SVILAGVLLKMGGYGFIRFSLPMFPEASAQFAPLVFGLSMAAVVITSLIALVQHDMKKLI 302 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM VT+G+F+ + G+EG+M MLSHGLVS ALF VGVIYDRLHTR+I YG Sbjct: 303 AYSSVAHMAIVTVGLFAFNRQGLEGSMIVMLSHGLVSGALFLSVGVIYDRLHTREIDRYG 362 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL NMP YAV ++FTMA++GLPGTSGF+GEFL ++ ++Q S+ VA++ + G++L A Y Sbjct: 363 GLSINMPYYAVFFLLFTMASIGLPGTSGFVGEFLSLIGIYQLSSWVALVCTTGIILGAAY 422 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 L+LYR+V +G K + DL RE M+ P+A + ++ G+YP ++F P+ Sbjct: 423 MLYLYRRVAYGEQKNADAAAMPDLDKREWAMMVPLAAVVLWMGVYP----ESFIAPMRKD 478 Query: 484 IENYTLK 490 I + + Sbjct: 479 IASLDAR 485 >gi|148266242|ref|YP_001232948.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter uraniireducens Rf4] gi|146399742|gb|ABQ28375.1| NADH dehydrogenase subunit M [Geobacter uraniireducens Rf4] Length = 525 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 239/491 (48%), Positives = 347/491 (70%), Gaps = 10/491 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LSI+TFLP LGVF++ F + G+ALGIS I FI SL + + F + + FQ + Sbjct: 8 LSIITFLPLLGVFLLFFVNKNSHAVSR--GIALGISLIAFIVSLPLVTGF-QNNAEFQFV 64 Query: 66 EYYHWI---DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E WI + +YH+G+DGIS+ LV+LTTF+ P ILS+W +++E +EYMI L+LE Sbjct: 65 EMIPWIAAGPFQMNYHIGIDGISLWLVILTTFIMPIAILSTWTAVEEKVKEYMICLLLLE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++GAF+SLD+ LFYIF+E LIPM+ IIG+WGG +IYAA KFF+YT GS+ ML A+ Sbjct: 125 VGMLGAFISLDLFLFYIFWEVMLIPMYFIIGIWGGKNKIYAAVKFFIYTMVGSLLMLVAL 184 Query: 183 VVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ +++ Y +S P + Q WM++AF +FAIK+PMFP HTWLP+AH +AP Sbjct: 185 ITLYFKAGGGDFNLLKFYQLSLDP-ATQTWMFLAFALAFAIKVPMFPLHTWLPDAHTEAP 243 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA ++LKMG YG +RF +PLFP+A+ F P+I LS+I IIYA+LV+MVQ D+K Sbjct: 244 TAGSVILAAVLLKMGTYGFVRFAIPLFPIATAQFTPLIATLSVIGIIYAALVAMVQEDVK 303 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KL+AYSS+AH+G+V +G+F+ + G+ G M QML+HG+ + ALF VG IY+R HTR I Sbjct: 304 KLVAYSSVAHLGFVMLGVFALNQQGIAGGMLQMLNHGVSTGALFLIVGFIYERRHTRLIT 363 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-NTVAVLASFGVVL 419 +GGL MP +A + M+ T++++GLPGT+GF+GEFLV++ F++S +++AS GV+L Sbjct: 364 DFGGLSKQMPVFATIFMIVTLSSIGLPGTNGFVGEFLVLIGSFESSIRWYSIIASSGVIL 423 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA+Y LW++++V+FG K Q LKDL+ RE ++ P+ VL F G+YP P D + Sbjct: 424 SAVYMLWMFQRVMFGELNNPKNQVLKDLNAREIVIMLPLLVLIFFMGVYPKPFLDKMTPS 483 Query: 480 LSSIIENYTLK 490 + ++I++ K Sbjct: 484 IDNLIQHVKTK 494 >gi|218670800|ref|ZP_03520471.1| NADH dehydrogenase subunit M [Rhizobium etli GR56] Length = 349 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 219/337 (64%), Positives = 279/337 (82%), Gaps = 1/337 (0%) Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 +FFEA LIPMF+IIGVWGG +R+YA+YKFFLYT GS+ ML AI+ M W+ T+ I L Sbjct: 1 VFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALL 60 Query: 199 AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 A KFP ++Q W+W+AFF SFA+K+PM+P HTWLP+AHVQAPTAGSV LAG++LK+GGYG Sbjct: 61 AY-KFPPALQTWLWLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYG 119 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 IRF L +FP+AS YFAP++F LS+IAIIY SLV+M+Q DIKKLIAYSS+AHMGYVT+GI Sbjct: 120 LIRFSLGMFPVASDYFAPLVFALSVIAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGI 179 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 F+ GV+G++FQMLSHG+VS ALF CVGV+YDR HTR+I AYGGLV+NMP+YAV MMV Sbjct: 180 FAANMQGVQGSIFQMLSHGIVSGALFLCVGVVYDRTHTREINAYGGLVNNMPKYAVAMMV 239 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 FTMAN+GLPGTSGF+GEFL ++ VF+ + VA+ A+ GV+LSA Y+LWLYR+V+FG + Sbjct: 240 FTMANVGLPGTSGFVGEFLTLIGVFRVNTWVALFAATGVILSAAYALWLYRRVIFGALEK 299 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 EK++ L DLS RE+ ++YP+ LT+ FG+YP P+ D Sbjct: 300 EKLKALLDLSPREQLILYPLVALTILFGVYPAPVFDA 336 >gi|94496468|ref|ZP_01303045.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingomonas sp. SKA58] gi|94424214|gb|EAT09238.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingomonas sp. SKA58] Length = 517 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 242/484 (50%), Positives = 344/484 (71%), Gaps = 13/484 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS-- 61 P LS++ +P G LF+ G S +AL + ++ + + +W+ FD+ ++ Sbjct: 5 PILSLMMAVPMAGAIACLFA-----GANSARWIALIATLVDLVLGIALWANFDQAGTAAQ 59 Query: 62 FQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 +Q EY F ++ LG+DGI+++L+VLT FL P CI +SW++IQ+ EYM AFL + Sbjct: 60 WQFQEYAPIFGRF-AWALGIDGIALMLIVLTVFLMPICIGASWQAIQKRVGEYMAAFLFM 118 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 E ++IG F + D+ LFY+ FEA LIPM++IIG+WGG++RIYA+YKFFLYT GS+ ML A Sbjct: 119 EVLMIGVFTAQDIYLFYVMFEAGLIPMYLIIGIWGGADRIYASYKFFLYTLLGSVLMLIA 178 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ M E T+ I L A + P Q W+++AFF SFA+K+PM+P HTWLP+AHVQAPT Sbjct: 179 MMWMVHEAGTTEIPALMAYNFAP-EAQTWLFLAFFASFAVKMPMWPVHTWLPDAHVQAPT 237 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LAG++LKMGGYG IRF LP+FP AS A +I+ LS++A++Y SLV++VQ+D+KK Sbjct: 238 AGSVILAGVLLKMGGYGFIRFSLPMFPEASAQLAWLIWGLSMVAVVYTSLVALVQSDMKK 297 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+AHM VT+G+F+ ++G+EGAM ML HGLVS ALF CVGVIYDRLHTR+I Sbjct: 298 LIAYSSVAHMAIVTVGLFAFNQAGIEGAMMVMLGHGLVSGALFLCVGVIYDRLHTREINR 357 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGGL NMP+YAV+ ++FTMA++GLPGTS F+GEFL +M ++Q S+ VA++ + G++L A Sbjct: 358 YGGLSINMPKYAVLFLLFTMASVGLPGTSNFVGEFLSLMGIYQASSWVALVCTTGIILGA 417 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y L+LYR++ +G + DLS+RE ++ PIA ++ G+YP ++F P+ Sbjct: 418 AYMLYLYRRIAYGEQVNADAAVMPDLSVREIALLAPIAAAVLWMGVYP----ESFLAPMR 473 Query: 482 SIIE 485 S I Sbjct: 474 SDIR 477 >gi|328775173|gb|AEB39981.1| NADH dehydrogenase subunit 4 [Funaria hygrometrica] Length = 495 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/458 (50%), Positives = 321/458 (70%), Gaps = 3/458 (0%) Query: 31 RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLV 89 R + L S I F++SL W FD + FQ +E W+ Y ++++G+DGIS+ V Sbjct: 35 RLIRSIGLCTSLITFLYSLLFWIQFDNSTAKFQFVETIRWLPYSNINFYIGIDGISLFFV 94 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 VLTTFL P CIL W SI+ +EYMIAFL+ ES +I F LD+LLFY+FFE+ LIPMF Sbjct: 95 VLTTFLIPICILVGWSSIKSYKKEYMIAFLICESFMIAVFCMLDLLLFYVFFESVLIPMF 154 Query: 150 VIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ 208 +IIGVWG +R I AAY+FFLYT GS+FML AI+ + ++ T+ + + ++F Q Sbjct: 155 IIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGTTDL-QILLTTEFSERRQ 213 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 +WIAFF SF++K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +P+FP Sbjct: 214 ILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFP 273 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 A+ YF P I+ LS+IAIIY SL ++ Q D+KK+IAYSS+AHM +VTIG+FS G+EG Sbjct: 274 EATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEG 333 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 ++ MLSHGLVSSALF CVGV+YDR TR + YGGLV MP ++ + + FT+ANM LPG Sbjct: 334 SILLMLSHGLVSSALFLCVGVLYDRHKTRLVKYYGGLVSTMPMFSTIFLFFTLANMSLPG 393 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 TS FIGEFL+++ FQ ++ VA LA+ G++L A YSLWLY +V+FG K + +Q+ DL+ Sbjct: 394 TSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVIFGNFKPKFLQKFSDLN 453 Query: 449 LRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 RE + +P V ++ G+YP + +S+++++ Sbjct: 454 RREVLIFFPFIVGVIWMGVYPEVFLECMHTSVSNLVQH 491 >gi|15604625|ref|NP_221143.1| NADH dehydrogenase subunit M [Rickettsia prowazekii str. Madrid E] gi|6647692|sp|Q9ZCG0|NUOM_RICPR RecName: Full=NADH-quinone oxidoreductase subunit M; AltName: Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1 subunit M gi|3861320|emb|CAA15219.1| NADH DEHYDROGENASE I CHAIN M (nuoM) [Rickettsia prowazekii] Length = 491 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 237/494 (47%), Positives = 343/494 (69%), Gaps = 9/494 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVIL--FSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 + LP +SI FLP + V IL F+ + S + VA+ S + FI ++++ FD Sbjct: 2 LELPIISITIFLPLISVLYILLFFNQNKKADKLSIY-VAMLSSVLTFISTIYILIEFDVS 60 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 +++Q +E Y W+D +H+GVDGI+I VVLT+FLT CI+ S +I++ +EY++ Sbjct: 61 NNTYQFVERYTWLDKIGLEFHVGVDGIAIFFVVLTSFLTLICIIGSLFTIKKYIKEYLVC 120 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL++ES+ IGAF S+++LLFY+FFEA L+PM++IIGVWGG RIYAA KFFLYTFFGS+F Sbjct: 121 FLLMESLCIGAFTSINLLLFYLFFEAILVPMYIIIGVWGGDNRIYAALKFFLYTFFGSVF 180 Query: 178 MLFAIVVMCWEKKTSSIIDLYAM-SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A++ + + + + ++ + P Q +W A F +FAIK PM PFHTWLP+AH Sbjct: 181 FLLALIYIYSKIHSFDLTNILELIGNIPLFAQKILWWAIFIAFAIKTPMIPFHTWLPDAH 240 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 VQAPT GSV LAGI+LK+GGYG +R LLPLFP ASQ FA + +LS+IAIIYASLV++ Q Sbjct: 241 VQAPTTGSVILAGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYLSVIAIIYASLVALAQ 300 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 DIK++IAYSSIAHMGYVTIGIFS + G+ GA+FQMLSHG++SS+LF VG +Y+RLHT Sbjct: 301 KDIKQMIAYSSIAHMGYVTIGIFSFTEIGISGAIFQMLSHGIISSSLFLIVGTLYERLHT 360 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 ++I YGG+ + MP A M+ ++++GLP TSGFIGEFL ++ +++ + A +A+ G Sbjct: 361 KEIAKYGGVANKMPILATFFMIAMLSSIGLPSTSGFIGEFLSLLGIYKVNVVTAFIAALG 420 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++L A+Y L LY++V+ G +++ +DL E + P+ +L ++FG+ P I + F Sbjct: 421 IILGAVYMLKLYKEVMLGEITNTEIKHFRDLYKYEIISIAPLILLIIYFGLMPNSILNVF 480 Query: 477 SVPLSSIIENYTLK 490 + +EN +K Sbjct: 481 HLS----VENLLIK 490 >gi|328775235|gb|AEB40013.1| NADH dehydrogenase subunit 4 [Funaria hygrometrica] Length = 495 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/458 (50%), Positives = 320/458 (69%), Gaps = 3/458 (0%) Query: 31 RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLV 89 R + L S I F++SL W FD + FQ +E W+ Y ++++G+DGIS+ V Sbjct: 35 RLIRSIGLCTSLITFLYSLLFWIQFDNSTAKFQFVETIRWLPYSNINFYIGIDGISLFFV 94 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 VLTTFL P CIL W SI+ +EYMIAFL+ ES +I F LD+LLFY+FFE+ LIPMF Sbjct: 95 VLTTFLIPICILVGWSSIKSYKKEYMIAFLICESFMIAVFCMLDLLLFYVFFESVLIPMF 154 Query: 150 VIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ 208 +IIGVWG +R I AAY+FFLYT GS+FML AI+ + ++ T+ + + ++F Q Sbjct: 155 IIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGTTDL-QILLTTEFSERRQ 213 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 +WIAFF SF++K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +P+FP Sbjct: 214 ILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFP 273 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 A+ YF P I+ LS+IAIIY SL ++ Q D+KK+IAYSS+AHM +VTIG+FS G+EG Sbjct: 274 EATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEG 333 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 ++ MLSHGLVSSALF CVGV+YDR TR + YGGLV MP ++ + + FT ANM LPG Sbjct: 334 SILLMLSHGLVSSALFLCVGVLYDRHKTRLVKYYGGLVSTMPMFSTIFLFFTSANMSLPG 393 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 TS FIGEFL+++ FQ ++ VA LA+ G++L A YSLWLY +V+FG K + +Q+ DL+ Sbjct: 394 TSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVIFGNFKPKFLQKFSDLN 453 Query: 449 LRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 RE + +P V ++ G+YP + +S+++++ Sbjct: 454 RREVLIFFPFIVGVIWMGVYPEVFLECMHTSVSNLVQH 491 >gi|292572442|gb|ADE30357.1| NADH dehydrogenase I chain M [Rickettsia prowazekii Rp22] Length = 491 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 236/494 (47%), Positives = 342/494 (69%), Gaps = 9/494 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVIL--FSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 + P +SI FLP + V IL F+ + S + VA+ S + FI ++++ FD Sbjct: 2 LEFPIISITIFLPLISVLYILLFFNQNKKADKLSIY-VAMLSSVLTFISTIYILIEFDVS 60 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 +++Q +E Y W+D +H+GVDGI+I VVLT+FLT CI+ S +I++ +EY++ Sbjct: 61 NNTYQFVERYTWLDKIGLEFHVGVDGIAIFFVVLTSFLTLICIIGSLFTIKKYIKEYLVC 120 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL++ES+ IGAF S+++LLFY+FFEA L+PM++IIGVWGG RIYAA KFFLYTFFGS+F Sbjct: 121 FLLMESLCIGAFTSINLLLFYLFFEAILVPMYIIIGVWGGDNRIYAALKFFLYTFFGSVF 180 Query: 178 MLFAIVVMCWEKKTSSIIDLYAM-SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A++ + + + + ++ + P Q +W A F +FAIK PM PFHTWLP+AH Sbjct: 181 FLLALIYIYSKIHSFDLTNILELIGNIPLFAQKILWWAIFIAFAIKTPMIPFHTWLPDAH 240 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 VQAPT GSV LAGI+LK+GGYG +R LLPLFP ASQ FA + +LS+IAIIYASLV++ Q Sbjct: 241 VQAPTTGSVILAGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYLSVIAIIYASLVALAQ 300 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 DIK++IAYSSIAHMGYVTIGIFS + G+ GA+FQMLSHG++SS+LF VG +Y+RLHT Sbjct: 301 KDIKQMIAYSSIAHMGYVTIGIFSFTEIGISGAIFQMLSHGIISSSLFLIVGTLYERLHT 360 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 ++I YGG+ + MP A M+ ++++GLP TSGFIGEFL ++ +++ + A +A+ G Sbjct: 361 KEIAKYGGVANKMPILATFFMIAMLSSIGLPSTSGFIGEFLSLLGIYKVNVVTAFIAALG 420 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++L A+Y L LY++V+ G +++ +DL E + P+ +L ++FG+ P I + F Sbjct: 421 IILGAVYMLKLYKEVMLGEITNTEIKHFRDLYKYEIISIAPLILLIIYFGLMPNSILNVF 480 Query: 477 SVPLSSIIENYTLK 490 + +EN +K Sbjct: 481 HLS----VENLLIK 490 >gi|91208857|ref|YP_539018.1| NADH dehydrogenase subunit 4 [Physcomitrella patens] gi|90991397|dbj|BAE93089.1| NADH dehydrogenase subunit 4 [Physcomitrella patens] Length = 495 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/458 (50%), Positives = 320/458 (69%), Gaps = 3/458 (0%) Query: 31 RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLV 89 R + L S I F++SL W FD + FQ +E W+ Y ++++G+DGIS V Sbjct: 35 RLIRSIGLCTSLITFLYSLLFWIQFDNSTAKFQFVETIRWLPYSNINFYIGIDGISSFFV 94 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 VLTTFL P CIL W SI+ +EYMIAFL+LES +I F LD+LLFY+FFE+ LIPMF Sbjct: 95 VLTTFLIPICILVGWSSIKSYKKEYMIAFLILESFMIAVFCMLDLLLFYVFFESVLIPMF 154 Query: 150 VIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ 208 +IIGVWG +R I AAY+FFLYT GS+FML AI+ + ++ T+ + + ++F Q Sbjct: 155 IIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGTTDL-QILLTTEFSERRQ 213 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 +WIAFF SF++K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +P+FP Sbjct: 214 ILLWIAFFASFSVKVPMIPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFP 273 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 A+ F P I+ LS+IAIIY SL ++ Q D+KK+IAYSS+AHM +VTIG+FS G+EG Sbjct: 274 EATLXFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEG 333 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 ++ MLSHGLVSSALF CVGV+YDR TR + YGGLV MP ++ + + FT+ANM LPG Sbjct: 334 SILLMLSHGLVSSALFLCVGVLYDRHKTRLVKYYGGLVSTMPMFSTIFLFFTLANMSLPG 393 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 TS FIGEFL+++ FQ ++ VA LA+ G++L A YSLWLY +V+FG K + +Q+ DL+ Sbjct: 394 TSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVIFGNFKPKFLQKFSDLN 453 Query: 449 LRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 RE + +P V ++ G+YP + +S+++++ Sbjct: 454 RREVLIFFPFIVGVIWMGVYPEVFLECMHTSVSNLVQH 491 >gi|38638282|ref|NP_943685.1| NADH dehydrogenase subunit 4 [Chara vulgaris] gi|32966596|gb|AAP92179.1| NADH dehydrogenase subunit 4 [Chara vulgaris] Length = 496 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 236/476 (49%), Positives = 324/476 (68%), Gaps = 5/476 (1%) Query: 13 PFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID 72 P LG ++L R +A S I F++SL W F+ + FQ +E W+ Sbjct: 19 PLLGALIVLLIP--NSKIRLIRSIAFCTSLITFLYSLLFWIQFENSTAKFQFVETIRWLP 76 Query: 73 Y-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLS 131 Y ++++G+DGIS+ VVLTTFL P C+L W SIQ +EYMIAFLVLE+ +I F Sbjct: 77 YSNINFYIGLDGISLFFVVLTTFLIPICMLVGWSSIQNYKKEYMIAFLVLEAFMIAVFCM 136 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 LD+LLFY+FFE+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+++ ++ Sbjct: 137 LDLLLFYVFFESVLIPMFIIIGVWGSRQRKIRAAYQFFLYTLLGSVFMLLAILLILFQTG 196 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 T+ + + ++F Q +WIAFF SFA+K+PM P H WLP AHV+APTAGSV LAGI Sbjct: 197 TTDL-QILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGI 255 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+G YG +RF +P+FP A+ YF P I+ LS+IAIIY SL ++ Q D+KK+IAYSS+AH Sbjct: 256 LLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTLRQIDLKKIIAYSSVAH 315 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M +VTIG+FS G+EG++ MLSHGLVSSALF CVG +YDR TR + YGGLV MP Sbjct: 316 MNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRLVKYYGGLVSTMP 375 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 ++ + + FT+AN+ LPGTS FIGEFL+++ FQ + VA LA+ G++L A YS+WLY + Sbjct: 376 IFSTIFLFFTLANISLPGTSSFIGEFLILVGAFQAAPNVATLAAIGMILGAAYSIWLYNR 435 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 VVFG K + + DL+ RE M P + V+ G+YP + +S+++++ Sbjct: 436 VVFGNLKPYFIHKFSDLNRREFFMFLPFVIGVVWMGVYPEVFLECMHTSVSNLVQH 491 >gi|110225643|ref|YP_665649.1| NADH dehydrogenase subunit 4 [Nephroselmis olivacea] gi|6066158|gb|AAF03176.1|AF110138_8 NADH dehydrogenase subunit 4 [Nephroselmis olivacea] Length = 500 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 234/453 (51%), Positives = 316/453 (69%), Gaps = 5/453 (1%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH--LGVDGISILLVVLTTF 94 AL +S INFI SLF+W FD FQ + W+ + H +G+DGIS+ V+L+TF Sbjct: 46 ALSVSLINFIASLFLWIQFDHSTPQFQFVTKITWLP-ISNLHIYMGIDGISLFFVILSTF 104 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CIL W SIQ REY+IAFL+LES +I F LD+LLFY+FFE+ LIPMF+IIG+ Sbjct: 105 LVPICILVGWVSIQTYVREYVIAFLILESCMIAVFCMLDLLLFYVFFESVLIPMFLIIGI 164 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG ER I AAY+FFLYT FGS+ ML AI+++ ++ T+ + LY S F Q +W+ Sbjct: 165 WGSRERKIRAAYQFFLYTLFGSVLMLLAIILIYFQTGTTDLQVLYTTS-FSEKRQILLWL 223 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF SFA+K+PM P H WLP AHV+APT+GSV LAG++LK+G YG +RF +P+FP AS Y Sbjct: 224 AFFASFAVKVPMVPVHIWLPEAHVEAPTSGSVILAGVLLKLGTYGFLRFSIPMFPEASLY 283 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P+I+ +S+IA+IYASL ++ Q D+KK+IAYSS+AHM +VTIG+FS G+EG++ M Sbjct: 284 FTPLIYTMSIIAVIYASLTTIRQIDLKKVIAYSSVAHMAFVTIGLFSLNVQGIEGSILLM 343 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLVSSALF CVG +YDR TR I YG VH MP ++V+ + FT+ N+ LPGTS F+ Sbjct: 344 LSHGLVSSALFLCVGCLYDRHKTRLIPYYGACVHTMPIFSVIFLFFTLGNLSLPGTSSFV 403 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+++ FQN+ + LA+ G+VL A YSLWLY +VVFG K + D + RE Sbjct: 404 GEFLILVGAFQNNTLITTLAATGMVLGAAYSLWLYNRVVFGNFKPNFINVYSDCNRREVF 463 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 M P+ + ++ GIYP D ++++I++ Sbjct: 464 MFLPLIIAVLWMGIYPEVFLDPMHCSVANVIQH 496 >gi|261856538|ref|YP_003263821.1| proton-translocating NADH-quinone oxidoreductase, chain M [Halothiobacillus neapolitanus c2] gi|261837007|gb|ACX96774.1| proton-translocating NADH-quinone oxidoreductase, chain M [Halothiobacillus neapolitanus c2] Length = 507 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 239/502 (47%), Positives = 345/502 (68%), Gaps = 26/502 (5%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRSS 61 P LS++ +LP + G+FV+ F G GR F AL S + F+ SL + FD + Sbjct: 7 PMLSLIVWLPIIAGIFVMWF----GAGRARFARWFALASSVVVFLLSLALLPGFDTHTYA 62 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E WI F YHLGVDGIS+ L++LTTF T I+S+W+ IQE +Y+ AFL+ Sbjct: 63 MQFVERVAWIPQFGIHYHLGVDGISLPLLILTTFTTVIVIVSAWEVIQEKAHQYLAAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +E M+ G F +LD ++FY FFE LIPMFVIIG+WGG R+YA KFFLYTF GS+FML Sbjct: 123 MEGMMNGTFAALDAIVFYFFFEGMLIPMFVIIGIWGGPRRVYATIKFFLYTFLGSVFMLI 182 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A++ M ++ + SI+ M + P ++ Q +++AFF +FA+KIPM+P HTWLP+AHV+ Sbjct: 183 ALIYMYFKGGSFSILH---MQQLPLTLTEQVLIFLAFFIAFAVKIPMWPVHTWLPDAHVE 239 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV LA IMLK+GGYG +RF LP+ P AS +I SLIAI+Y V++VQ+D Sbjct: 240 APTGGSVILAAIMLKIGGYGFLRFSLPITPDASALLDSMIIAFSLIAIVYIGFVALVQSD 299 Query: 299 IKKLIAYSSIAHMGYVTIGIF--------------SGMKSGVEGAMFQMLSHGLVSSALF 344 +KKL+AYSSI+HMG+VT+G+F SG++ +EGAM QM+SHGL+S+A+F Sbjct: 300 MKKLVAYSSISHMGFVTLGMFVIFMIAANPLNVSGSGVRLALEGAMVQMISHGLISAAMF 359 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 +GV+YDRLH+R+I AYGG+V+ MP +A +++VF MAN+GLPGTSGF+GEF+VI++ F+ Sbjct: 360 LSIGVLYDRLHSREISAYGGVVNTMPWFAAMVVVFAMANVGLPGTSGFVGEFMVILASFK 419 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + +A+LA+ +++ A Y+LW+ ++V+FG + E V +LKD++ RE M+ + VL + Sbjct: 420 ANFWIALLAALTLIIGASYTLWMVKRVIFGDVQNEGVAKLKDVNKREAWMLGSLVVLIIL 479 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 GI+P P+ D + + + Sbjct: 480 VGIWPNPLLDLMHATIEHLAQQ 501 >gi|171316315|ref|ZP_02905536.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ambifaria MEX-5] gi|171098541|gb|EDT43342.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ambifaria MEX-5] Length = 496 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 234/485 (48%), Positives = 335/485 (69%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS +LP + G+ V+ + G + VAL S + ++ + + FD ++ Sbjct: 5 PILSTAIWLPIVFGLLVLAVGNDKNPGTARW--VALIGSLLGLAVTIPLITGFDSSTAAL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E WI+ F SYHLGVDGIS+ VVLT +T ++++W+ I EN +Y+ AFL+L Sbjct: 63 QFVEKSTWIERFDISYHLGVDGISMWFVVLTALITVIVVIAAWEVITENVAQYLAAFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + + S + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LIYL-YTQTHSFDLATWQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P ASQ+ APV+ LSLIA+IY LV+MVQ D+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFLRFSLPITPDASQFLAPVVITLSLIAVIYIGLVAMVQADMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDRLH+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRLHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F ++L A Sbjct: 362 YGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAFTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V +LKD+ RE M+ +A T+ G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAVANDHVAKLKDIGRREFLMLAVLAAFTMLMGLYPKPFTDVMHVSVE 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLSH 486 >gi|157827772|ref|YP_001496836.1| NADH dehydrogenase subunit M [Rickettsia bellii OSU 85-389] gi|157803076|gb|ABV79799.1| NADH dehydrogenase I chain M [Rickettsia bellii OSU 85-389] Length = 494 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 234/492 (47%), Positives = 340/492 (69%), Gaps = 5/492 (1%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDK 57 + LP +SI FLP + V +++LF S + VA+ S + FI ++++ FD Sbjct: 2 LELPIISITIFLPLISVLYILLFISQSKKPDKQIHTMYVAVLSSVLTFISTIYILIEFDS 61 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++Q +E Y W+D +H+G+DGISI V LT+FLT CI+ S ++++ +EY++ Sbjct: 62 SNPTYQFVERYSWLDKIGLEFHVGIDGISIFFVSLTSFLTLICIIGSLFTVKKYIKEYLV 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL++ES IGAF S+++LLFY+FFE L+PM++IIGVWGG RIYAA KFFLYTFFGS+ Sbjct: 122 CFLLMESFCIGAFTSINLLLFYLFFEVILVPMYIIIGVWGGENRIYAAVKFFLYTFFGSV 181 Query: 177 FMLFAIVVMCWEKKTSSIIDLYA-MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F L +I+ + + + + ++ + FP +Q +W A F +FAIKIPM PFHTWLP+A Sbjct: 182 FFLLSIIYIYSKIHSFDLSNIGEFTNNFPLHVQQILWWAIFIAFAIKIPMIPFHTWLPDA 241 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAPT+GSV LAGI+LK+GGYG +R LLPL P ASQ FA + +LS+IAIIYASLV++ Sbjct: 242 HVQAPTSGSVILAGILLKLGGYGFLRVLLPLLPNASQEFAIYVIWLSVIAIIYASLVALA 301 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KK+IAYSSIAHMGYVTIGIFS SGV GA+FQMLSHG++SS LF VG +Y+RLH Sbjct: 302 QKDMKKMIAYSSIAHMGYVTIGIFSFTDSGVSGALFQMLSHGIISSCLFLIVGTLYERLH 361 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 T++I YGG+ MP A M+ + ++GLPGTSGFIGEFL ++ +++ + LA+ Sbjct: 362 TKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVIATFLAAL 421 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++L A+Y L LY++V+ G +++ +DL + E + P+ +L ++FG+ P I + Sbjct: 422 GIILGAIYMLKLYKEVMLGEITNKEIINFRDLYIYEIISIAPLILLIIYFGLMPSSILNV 481 Query: 476 FSVPLSSIIENY 487 F + + +++ + Sbjct: 482 FHLSVENLLVKF 493 >gi|83719938|ref|YP_441626.1| NADH dehydrogenase subunit M [Burkholderia thailandensis E264] gi|167580435|ref|ZP_02373309.1| NADH dehydrogenase subunit M [Burkholderia thailandensis TXDOH] gi|167618544|ref|ZP_02387175.1| NADH dehydrogenase subunit M [Burkholderia thailandensis Bt4] gi|257139678|ref|ZP_05587940.1| NADH dehydrogenase subunit M [Burkholderia thailandensis E264] gi|83653763|gb|ABC37826.1| NADH dehydrogenase I, M subunit [Burkholderia thailandensis E264] Length = 496 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 236/490 (48%), Positives = 332/490 (67%), Gaps = 11/490 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW----SVFDK 57 + P LS +LP + V+L G G A I+ I + L V + FD Sbjct: 3 SFPILSTAIWLPIVFGLVVL-----AVGSDKNPGAARWIALIGSLAGLAVTIPLITGFDS 57 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++ Q +E WI+ F SYHLGVDGIS+ VVLT +T +++ W+ I EN +Y+ Sbjct: 58 STAALQFVEQTTWIERFNISYHLGVDGISMWFVVLTALITVIVVIAGWEVITENVSQYLA 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 AFL+L ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 118 AFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSL 177 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML A++ + + + S + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AH Sbjct: 178 LMLVALIYL-YTQTHSFDLATWQNAKIAMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAH 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT GSV LA IMLK+G YG +RF LP+ P AS +FAPV+ LSL A+IY LV+MVQ Sbjct: 237 VEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFFAPVVIALSLTAVIYIGLVAMVQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+KKL+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDRLH+ Sbjct: 297 ADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRLHS 356 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F Sbjct: 357 RQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAFT 416 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++L A Y+LW+Y++V FG +KV +L D+S RE M+ +A T+ G+YP P D Sbjct: 417 LILGAAYTLWMYKRVYFGAVTSDKVAKLSDISRREFTMLAVLAAFTLLMGLYPKPFTDVM 476 Query: 477 SVPLSSIIEN 486 V + +++ + Sbjct: 477 HVSVENLLSH 486 >gi|78485174|ref|YP_391099.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thiomicrospira crunogena XCL-2] gi|78363460|gb|ABB41425.1| NADH dehydrogenase I chain M [Thiomicrospira crunogena XCL-2] Length = 504 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 237/499 (47%), Positives = 338/499 (67%), Gaps = 18/499 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRSSF 62 P LS + +LP +G +ILF LG R +F AL +S + F+ S+ +W+ FD S+ Sbjct: 6 PILSTLIWLPIIGGLLILF---LGRDRDTFTKWFALSVSVVTFLVSIPLWTQFDTSTSAM 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E WI F Y+LGVDG+S+ LV+LTTF I S+W I+E +YM AF+++ Sbjct: 63 QFVEKASWISQFNIQYYLGVDGLSMPLVLLTTFTQILVIASAWDVIKERVEQYMGAFMIM 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 + ++IG F++LD +LFY+F+EA LIPMF++IG WGG +R+YA KFFLYTFFGS+FML A Sbjct: 123 QGLMIGVFVALDGILFYVFWEALLIPMFIVIGKWGGQDRVYATIKFFLYTFFGSVFMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + M ++ + SI+D +AM + Q +++AF +FA+K+PMFP HTWLP+AHVQAPT Sbjct: 183 FLYMYFQSGSFSILDFHAM-HLGSTAQILIFLAFLIAFAVKVPMFPVHTWLPDAHVQAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LA IMLKMGGYG +RF LP+ P AS ++ LSLIAI Y LV+MVQ D+KK Sbjct: 242 AGSVVLAAIMLKMGGYGFVRFSLPITPDASMELDWLVIALSLIAIFYIGLVAMVQKDMKK 301 Query: 302 LIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 L+AYSSI+HMG+VTIG+F G G+EGAM QM+SHG +S A+F +GV Sbjct: 302 LVAYSSISHMGFVTIGMFLVYDIVQNTGSIQGSMIGMEGAMIQMISHGFISGAMFLMIGV 361 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 +YDR+HTR+I AYGG+V+ MP + ++F MAN GLPGTSGF+GEF+VI++ F+ + Sbjct: 362 LYDRMHTREISAYGGVVNTMPWFGFFAVLFAMANAGLPGTSGFVGEFMVILASFKANVWY 421 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++A+ +++ A Y+LW+ ++V FG + V LKDL+ RE ++ +A V GIYP Sbjct: 422 GIVAASTLIIGAAYTLWMVKRVFFGAVANDNVGSLKDLNKREFAIMATLAFAVVLLGIYP 481 Query: 470 VPIRDTFSVPLSSIIENYT 488 P+ + +++++ T Sbjct: 482 APLIEVMHSSVANLLIQAT 500 >gi|172061197|ref|YP_001808849.1| NADH dehydrogenase subunit M [Burkholderia ambifaria MC40-6] gi|171993714|gb|ACB64633.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ambifaria MC40-6] Length = 496 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 233/485 (48%), Positives = 334/485 (68%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS +LP + G+ V+ + G + VAL S + ++ + + FD ++ Sbjct: 5 PILSTAIWLPIVFGLLVLAVGNDKNPGTARW--VALIGSLLGLAVTIPLITDFDSSTAAL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E WI+ F SYHLGVDGIS+ VVLT +T ++++W+ I EN +Y+ AFL+L Sbjct: 63 QFVEKSTWIERFDISYHLGVDGISMWFVVLTALITVIVVIAAWEVITENVAQYLAAFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + + S + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LIYL-YTQTHSFDLATWQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDRLH+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGVEGAIIQMISHGFVSGAMFLCIGVLYDRLHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F ++L A Sbjct: 362 YGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAFTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V +LKD+ RE M+ +A T+ G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAVANDHVAKLKDIGRREFVMLAVLAAFTMLMGLYPKPFTDVMHVSVE 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLSH 486 >gi|53718859|ref|YP_107845.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei K96243] gi|53725803|ref|YP_103422.1| NADH dehydrogenase subunit M [Burkholderia mallei ATCC 23344] gi|67642180|ref|ZP_00440940.1| NADH-quinone oxidoreductase chain m (nadh dehydrogenasei, chain m) (ndh-1, chain m) [Burkholderia mallei GB8 horse 4] gi|76812146|ref|YP_332857.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 1710b] gi|121600753|ref|YP_992481.1| NADH dehydrogenase subunit M [Burkholderia mallei SAVP1] gi|124386385|ref|YP_001026716.1| NADH dehydrogenase subunit M [Burkholderia mallei NCTC 10229] gi|126439650|ref|YP_001058350.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 668] gi|126448901|ref|YP_001079999.1| NADH dehydrogenase subunit M [Burkholderia mallei NCTC 10247] gi|126451700|ref|YP_001065589.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 1106a] gi|134283893|ref|ZP_01770589.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 305] gi|167000356|ref|ZP_02266174.1| NADH dehydrogenase I, M subunit [Burkholderia mallei PRL-20] gi|167718858|ref|ZP_02402094.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei DM98] gi|167737866|ref|ZP_02410640.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 14] gi|167815049|ref|ZP_02446729.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 91] gi|167823465|ref|ZP_02454936.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 9] gi|167845017|ref|ZP_02470525.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei B7210] gi|167893558|ref|ZP_02480960.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 7894] gi|167902004|ref|ZP_02489209.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei NCTC 13177] gi|167910240|ref|ZP_02497331.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei 112] gi|167918273|ref|ZP_02505364.1| NADH dehydrogenase subunit M [Burkholderia pseudomallei BCC215] gi|217419996|ref|ZP_03451502.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 576] gi|226195338|ref|ZP_03790927.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei Pakistan 9] gi|237811594|ref|YP_002896045.1| NADH-quinone oxidoreductase, m subunit [Burkholderia pseudomallei MSHR346] gi|242317262|ref|ZP_04816278.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 1106b] gi|254175572|ref|ZP_04882232.1| NADH dehydrogenase I, M subunit [Burkholderia mallei ATCC 10399] gi|254181175|ref|ZP_04887772.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei 1655] gi|254190538|ref|ZP_04897045.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei Pasteur 52237] gi|254195205|ref|ZP_04901634.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei S13] gi|254202098|ref|ZP_04908461.1| NADH dehydrogenase I, M subunit [Burkholderia mallei FMH] gi|254207428|ref|ZP_04913778.1| NADH dehydrogenase I, M subunit [Burkholderia mallei JHU] gi|254261203|ref|ZP_04952257.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei 1710a] gi|254298545|ref|ZP_04965997.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei 406e] gi|254359850|ref|ZP_04976120.1| NADH dehydrogenase I, M subunit [Burkholderia mallei 2002721280] gi|52209273|emb|CAH35218.1| NADH dehydrogenase I chain M [Burkholderia pseudomallei K96243] gi|52429226|gb|AAU49819.1| NADH dehydrogenase I, M subunit [Burkholderia mallei ATCC 23344] gi|76581599|gb|ABA51074.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 1710b] gi|121229563|gb|ABM52081.1| NADH dehydrogenase I, M subunit [Burkholderia mallei SAVP1] gi|124294405|gb|ABN03674.1| NADH dehydrogenase I, M subunit [Burkholderia mallei NCTC 10229] gi|126219143|gb|ABN82649.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei 668] gi|126225342|gb|ABN88882.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 1106a] gi|126241771|gb|ABO04864.1| NADH dehydrogenase I, M subunit [Burkholderia mallei NCTC 10247] gi|134244682|gb|EBA44780.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 305] gi|147746345|gb|EDK53422.1| NADH dehydrogenase I, M subunit [Burkholderia mallei FMH] gi|147751322|gb|EDK58389.1| NADH dehydrogenase I, M subunit [Burkholderia mallei JHU] gi|148029090|gb|EDK86995.1| NADH dehydrogenase I, M subunit [Burkholderia mallei 2002721280] gi|157808386|gb|EDO85556.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei 406e] gi|157938213|gb|EDO93883.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei Pasteur 52237] gi|160696616|gb|EDP86586.1| NADH dehydrogenase I, M subunit [Burkholderia mallei ATCC 10399] gi|169651953|gb|EDS84646.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei S13] gi|184211713|gb|EDU08756.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei 1655] gi|217397300|gb|EEC37316.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 576] gi|225932540|gb|EEH28538.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei Pakistan 9] gi|237504615|gb|ACQ96933.1| NADH-quinone oxidoreductase, m subunit [Burkholderia pseudomallei MSHR346] gi|238523276|gb|EEP86715.1| NADH-quinone oxidoreductase chain m (nadh dehydrogenasei, chain m) (ndh-1, chain m) [Burkholderia mallei GB8 horse 4] gi|242140501|gb|EES26903.1| NADH dehydrogenase I, M subunit [Burkholderia pseudomallei 1106b] gi|243063690|gb|EES45876.1| NADH dehydrogenase I, M subunit [Burkholderia mallei PRL-20] gi|254219892|gb|EET09276.1| NADH-quinone oxidoreductase, M subunit [Burkholderia pseudomallei 1710a] Length = 496 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 236/490 (48%), Positives = 332/490 (67%), Gaps = 11/490 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW----SVFDK 57 + P LS +LP + V+L G G A I+ I + L V + FD Sbjct: 3 SFPILSTAIWLPIVFGLVVL-----AVGSDKHPGAARWIALIGSLAGLAVTIPLITGFDS 57 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++ Q +E WI+ F SYHLGVDGIS+ VVLT +T +++ W+ I EN +Y+ Sbjct: 58 STAALQFVEQSTWIERFNISYHLGVDGISMWFVVLTALITVIVVIAGWEVITENVSQYLA 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 AFL+L ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 118 AFLILSGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSL 177 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML A++ + + + S + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AH Sbjct: 178 LMLVALIYL-YTQTHSFDLATWQNAKIAMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAH 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT GSV LA IMLK+G YG +RF LP+ P AS +FAPV+ LSLIA+IY LV+MVQ Sbjct: 237 VEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFFAPVVISLSLIAVIYIGLVAMVQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+KKL+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDRLH+ Sbjct: 297 ADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRLHS 356 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F Sbjct: 357 RQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQFNFWIAFGAAFT 416 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++L A Y+LW+Y++V FG + V +LKD+ RE M+ +A T+ G+YP P D Sbjct: 417 LILGAAYTLWMYKRVYFGAVANDHVAKLKDIGRREFTMLAVLAAFTLLMGLYPKPFTDVM 476 Query: 477 SVPLSSIIEN 486 V + +++ + Sbjct: 477 HVSVENLLSH 486 >gi|322421838|ref|YP_004201061.1| proton-translocating NADH-quinone oxidoreductase subunit M [Geobacter sp. M18] gi|320128225|gb|ADW15785.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter sp. M18] Length = 545 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 236/494 (47%), Positives = 338/494 (68%), Gaps = 12/494 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 LP LSI+TF P +G V+LF + G VA+ ++ + F+ SL + + ++ S Sbjct: 3 QLPLLSILTFTPLIGAIVLLFVNKNSHG--VLRTVAMAVTVVTFVLSLPLITGYNAPGSD 60 Query: 62 ---FQMIEYYHWI---DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 FQ +E WI + SYHLG+DGIS+ LV+LTTF+ P ILS++ +++E +EYM Sbjct: 61 IGGFQYLENIPWIAAGPFQMSYHLGIDGISLWLVILTTFIMPIAILSTYTAVEEKVKEYM 120 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 I L+LE +IG F+SLD+ LFYIF+E LIPM+ +IG+WGG RIYAA KFF+YT GS Sbjct: 121 ICLLLLEVGMIGTFISLDLFLFYIFWEIMLIPMYFMIGIWGGKNRIYAAVKFFIYTAVGS 180 Query: 176 IFMLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 + ML A++ + ++ S++ Y + P + Q WM++AF +FAIK+PMFP HTWLP Sbjct: 181 LLMLVALIALYFKAGGGDFSVLRFYQLHLDP-ATQVWMFLAFALAFAIKVPMFPLHTWLP 239 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH +APTAGSV LA +MLK G YG +RF +PLFP AS F P+I LS+I IIYASLV+ Sbjct: 240 DAHTEAPTAGSVILAAVMLKCGTYGYVRFAMPLFPDASAQFTPLIATLSVIGIIYASLVA 299 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 MVQ D+KKL+AYSS+AH+G+V +G+++ + G+ G M QML+HG+ + ALF VG IY+R Sbjct: 300 MVQQDVKKLVAYSSVAHLGFVMLGVYALNQQGITGGMLQMLNHGVSTGALFLIVGFIYER 359 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-NTVAVL 412 HTR I +GGL MP +A + M+ T +++GLPGT+GF+GEFLV++ F++ A++ Sbjct: 360 RHTRLISDFGGLAKQMPVFATMFMIVTFSSIGLPGTNGFVGEFLVLLGSFESELRWYAII 419 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+LSA+Y LW++++V+FG K K Q LKDL+ RE ++ P+ L F GIYP PI Sbjct: 420 ATSGVILSAVYMLWMFQRVMFGELKNPKNQTLKDLNTREVVIMLPLIFLIFFLGIYPRPI 479 Query: 473 RDTFSVPLSSIIEN 486 D+ + + +I Sbjct: 480 IDSMTPSIDRLIAQ 493 >gi|170698121|ref|ZP_02889201.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ambifaria IOP40-10] gi|170136979|gb|EDT05227.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ambifaria IOP40-10] Length = 496 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 236/488 (48%), Positives = 333/488 (68%), Gaps = 11/488 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW----SVFDKGR 59 P LS +LP VF +L L G G A ++ I +F L V + FD Sbjct: 5 PILSTAIWLPI--VFGLLV---LAVGNDKNPGTARWVALIGSLFGLAVTIPLITGFDSST 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 ++ Q +E WI+ F SYHLGVDGIS+ VVLT +T ++++W+ I EN +Y+ AF Sbjct: 60 AALQFVEKSTWIERFDISYHLGVDGISMWFVVLTALITVIVVIAAWEVITENVAQYLAAF 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ M Sbjct: 120 LILSGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLM 179 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A++ + + + S + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+ Sbjct: 180 LVALIYL-YTQTHSFDLATWQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVE 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D Sbjct: 239 APTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQAD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDR+H+R Sbjct: 299 MKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIIQMISHGFVSGAMFLCIGVLYDRVHSRQ 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F ++ Sbjct: 359 IADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAFTLI 418 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A Y+LW+Y++V FG + V +LKD+ RE M+ +A T+ G+YP P D V Sbjct: 419 LGAAYTLWMYKRVYFGAVANDHVAKLKDIGRREFLMLAVLAAFTMLMGLYPKPFTDVMHV 478 Query: 479 PLSSIIEN 486 + +++ + Sbjct: 479 SVENLLSH 486 >gi|325524290|gb|EGD02403.1| NADH:ubiquinone oxidoreductase subunit M [Burkholderia sp. TJI49] Length = 496 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 232/485 (47%), Positives = 335/485 (69%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS +LP + G+ V+ + G + VAL S + ++ + + FD ++ Sbjct: 5 PILSTAIWLPIVFGLLVLAVGNDKNPGTARW--VALIGSLLGLAVTIPLITGFDSSTAAL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E+ WI+ F SYHLGVDGIS+ VVLT +T ++++W+ I EN +Y+ AFL+L Sbjct: 63 QFVEHSTWIERFDISYHLGVDGISMWFVVLTALITVIVVIAAWEVITENVAQYLAAFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + + S + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LIYL-YTQTHSFDLATWQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDR+H+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRVHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F ++L A Sbjct: 362 YGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAFTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V +LKD+ RE M+ +A T+ G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAVANDHVAKLKDIGRREFLMLAVLAAFTLLMGLYPKPFTDVMHVSVE 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLSH 486 >gi|157964941|ref|YP_001499765.1| NADH dehydrogenase subunit M [Rickettsia massiliae MTU5] gi|157844717|gb|ABV85218.1| NADH dehydrogenase I chain M [Rickettsia massiliae MTU5] Length = 493 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 233/492 (47%), Positives = 342/492 (69%), Gaps = 5/492 (1%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDK 57 + LP +SI FLP + V +++LF S + + VA+ S + FI ++++ FD Sbjct: 2 LELPIISISIFLPLISVLYILLFISQSKKADKPIYVMYVAVLSSVLTFISTIYILIEFDS 61 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++Q IE Y W+D +H+GVDGISI VVLT+FLT CI+ S ++++ +EY++ Sbjct: 62 SNPAYQFIERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLV 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL++ES IGAF S+++LLFY+FFEA L+PM++IIGVWGG RIYAA KFFLYTFFGS+ Sbjct: 122 CFLLMESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGENRIYAALKFFLYTFFGSV 181 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F L +++ + + + + ++ ++ P Q +W A F +FA+KIPM PFHTWLP+A Sbjct: 182 FFLLSLIYIYSKMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPMIPFHTWLPDA 241 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAPT+GSV LAGI+LK+GGYG +R LLPL P SQ FA + +LS+IAIIYASLV++ Sbjct: 242 HVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALA 301 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KK+IAYSSIAHMGYVTIGIFS ++GV GA+FQMLSHG++SS LF VG +Y+RLH Sbjct: 302 QKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLYERLH 361 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 T++I YGG+V MP A M+ + ++GLPGTSGFIGEFL ++ +++ + +A+ Sbjct: 362 TKEIAKYGGVVSKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAAL 421 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++ A+Y L LY++V+ G +++ +DL E + P+ +L ++FG+ P I + Sbjct: 422 GIIFGAVYMLKLYKEVMLGEITNKEIMHFRDLYKYEIISIAPLILLIIYFGLMPSSILNV 481 Query: 476 FSVPLSSIIENY 487 FS+ + +++ + Sbjct: 482 FSLSVENLLVKF 493 >gi|222053582|ref|YP_002535944.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter sp. FRC-32] gi|221562871|gb|ACM18843.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter sp. FRC-32] Length = 528 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 224/467 (47%), Positives = 333/467 (71%), Gaps = 8/467 (1%) Query: 35 GVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID---YFCSYHLGVDGISILLVVL 91 G+ALG+S I F+ S+ + + F + + FQ +E WI + SYH+G+DGIS+ LV+L Sbjct: 35 GIALGVSLIVFLVSIPLITGF-QNTAEFQFVEKVPWISAGPFQMSYHIGIDGISLWLVIL 93 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 TTF+ P ILS+W +++E +EYMI L+LE ++GAF+++D+ LFYIF+E LIPM+ I Sbjct: 94 TTFIMPIAILSTWTAVEEKVKEYMICLLLLEVGMLGAFIAIDLFLFYIFWEVMLIPMYFI 153 Query: 152 IGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQY 209 IG+WGG +IYAA KFF+YT GS+ ML A++ + ++ +++ Y +S P + Q Sbjct: 154 IGIWGGKNKIYAAVKFFIYTMVGSLLMLVALIALYFKAGGGDFNLLKFYQLSLDPVT-QT 212 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 WM++AF +FAIK+PMFP HTWLP+AH +APTAGSV LA ++LKMG YG +RF +PLFPL Sbjct: 213 WMFLAFALAFAIKVPMFPLHTWLPDAHTEAPTAGSVILAAVLLKMGTYGFVRFAIPLFPL 272 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 A+ F P+I LS+I IIYA+LV+MVQ D+KKL+AYSS+AH+G+V +G+F+ + G+ G Sbjct: 273 ATDQFTPLIATLSVIGIIYAALVAMVQEDVKKLVAYSSVAHLGFVMLGVFALNEQGIAGG 332 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 M QML+HG+ + ALF VG IY+R HTR I +GGL MP +A + M+ T++++GLPGT Sbjct: 333 MLQMLNHGVSTGALFLIVGFIYERRHTRLITDFGGLSKQMPVFATIFMIVTLSSIGLPGT 392 Query: 390 SGFIGEFLVIMSVFQNS-NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 +GF+GEFLV++ F++S +V+A+ GV+LSA+Y LW++++V+FG K Q LKDL+ Sbjct: 393 NGFVGEFLVLIGSFESSIRWYSVIATSGVILSAVYMLWMFQRVMFGELNNPKNQVLKDLN 452 Query: 449 LRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 RE ++ P+ VL F G+YP P D S + +++++ K ++ Sbjct: 453 AREIAIMLPLLVLIFFMGVYPRPFLDKMSPSIVNLVQHVKTKQAAAN 499 >gi|15893150|ref|NP_360864.1| NADH dehydrogenase subunit M [Rickettsia conorii str. Malish 7] gi|20139031|sp|Q92G96|NUOM_RICCN RecName: Full=NADH-quinone oxidoreductase subunit M; AltName: Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1 subunit M gi|15620359|gb|AAL03765.1| NADH dehydrogenase I chain M [Rickettsia conorii str. Malish 7] Length = 493 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 232/492 (47%), Positives = 342/492 (69%), Gaps = 5/492 (1%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDK 57 + LP +SI FLP + V +++LF S + + VA+ S + FI ++++ FD Sbjct: 2 LELPIISISIFLPLISVLYILLFISQSKKADKPIYVMYVAVLSSVLTFISTIYILIEFDS 61 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++Q +E Y W+D +H+GVDGISIL VVLT+FLT CI+ S ++++ +EY++ Sbjct: 62 SNPAYQFVERYAWLDKIGLEFHVGVDGISILFVVLTSFLTLICIIGSLFTVKKYIKEYLV 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL++ES IGAF S+++LLFY+FFEA L+PM++IIGVWGG RIYAA KFFLYTFFGS+ Sbjct: 122 CFLLMESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSV 181 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F L +++ + + + + ++ ++ P Q +W A F +FA+KIP+ PFHTWLP+A Sbjct: 182 FFLLSLIYIYSKMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDA 241 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAPT+GSV LAGI+LK+GGYG +R LLPL P SQ FA + +LS+IAIIYASLV++ Sbjct: 242 HVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALA 301 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KK+IAYSSIAHMGYVTIGIFS K+GV GA+FQMLSHG++SS LF VG +Y+RLH Sbjct: 302 QKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLH 361 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 T++I YGG+ MP A M+ + ++GLPGTSGFIGEFL ++ +++ + +A+ Sbjct: 362 TKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAAL 421 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++ A+Y L LY++V+ G +++ +DL E + P+ +L ++FG+ P I + Sbjct: 422 GIIFGAVYMLKLYKEVMLGEITNKEIMHFRDLYKYEIISIAPLILLIIYFGLMPSSILNV 481 Query: 476 FSVPLSSIIENY 487 FS+ + +++ + Sbjct: 482 FSLSVENLLVKF 493 >gi|115352326|ref|YP_774165.1| NADH dehydrogenase subunit M [Burkholderia ambifaria AMMD] gi|115282314|gb|ABI87831.1| NADH dehydrogenase subunit M [Burkholderia ambifaria AMMD] Length = 496 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 232/485 (47%), Positives = 334/485 (68%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS +LP + G+ V+ + G + VAL S + ++ + + FD ++ Sbjct: 5 PILSTAIWLPIVFGLLVLAVGNDKNPGTARW--VALIGSLLGLAVTIPLITGFDSSTAAL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E WI+ F +YHLGVDGIS+ VVLT +T ++++W+ I EN +Y+ AFL+L Sbjct: 63 QFVEKSTWIERFDIAYHLGVDGISMWFVVLTALITVIVVIAAWEVITENVAQYLAAFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + + S + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LIYL-YTQTHSFDLATWQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDRLH+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGVEGAIIQMISHGFVSGAMFLCIGVLYDRLHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F ++L A Sbjct: 362 YGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAFTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V +LKD+ RE M+ +A T+ G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAVANDHVAKLKDIGRREFLMLAVLAAFTMLMGLYPKPFTDVMHVSVE 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLSH 486 >gi|91204903|ref|YP_537258.1| NADH dehydrogenase subunit M [Rickettsia bellii RML369-C] gi|122426095|sp|Q1RKE5|NUOM_RICBR RecName: Full=NADH-quinone oxidoreductase subunit M; AltName: Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1 subunit M gi|91068447|gb|ABE04169.1| NADH dehydrogenase I chain M [Rickettsia bellii RML369-C] Length = 494 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 232/492 (47%), Positives = 339/492 (68%), Gaps = 5/492 (1%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDK 57 + LP +SI FLP + V +++LF S + VA+ S + FI ++++ FD Sbjct: 2 LELPIISITIFLPLISVLYILLFISQSKKPDKQIHTMYVAVLSSVLTFISTIYILIEFDS 61 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++Q +E Y W+D +H+G+DGISI V LT+FLT CI+ S ++++ +EY++ Sbjct: 62 SNPTYQFVERYSWLDKIGLEFHVGIDGISIFFVSLTSFLTLICIIGSLFTVKKYIKEYLV 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL++ES IGAF S+++L+FY+FFE L+PM++IIGVWGG RIYAA KFFLYTFFGS+ Sbjct: 122 CFLLMESFCIGAFTSINLLVFYLFFEVILVPMYIIIGVWGGENRIYAAVKFFLYTFFGSV 181 Query: 177 FMLFAIVVMCWEKKTSSIIDLYA-MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F L +I+ + + + + ++ + FP +Q +W A F +FAIKIPM PFHTWLP+A Sbjct: 182 FFLLSIIYIYSKIHSFDLSNIGEFTNNFPLHVQQILWWAIFIAFAIKIPMIPFHTWLPDA 241 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAPT+GSV LAGI+LK+GGYG +R LLPL P ASQ FA + +LS+IAIIYASLV++ Sbjct: 242 HVQAPTSGSVILAGILLKLGGYGFLRVLLPLLPNASQEFAIYVIWLSVIAIIYASLVALA 301 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KK+IAYSSI HMGYVTIGIFS SGV GA+FQMLSHG++SS LF VG +Y+RLH Sbjct: 302 QKDMKKMIAYSSITHMGYVTIGIFSFTDSGVSGALFQMLSHGIISSCLFLIVGTLYERLH 361 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 T++I YGG+ MP A M+ + ++GLPGTSGFIGEFL ++ +++ + LA+ Sbjct: 362 TKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVIATFLAAL 421 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++L A+Y L LY++V+ G +++ +DL + E + P+ +L ++FG+ P I + Sbjct: 422 GIILGAIYMLKLYKEVMLGEITNKEIINFRDLYIYEIISIAPLILLIIYFGLMPSSILNV 481 Query: 476 FSVPLSSIIENY 487 F + + +++ + Sbjct: 482 FHLSVENLLVKF 493 >gi|113170508|ref|YP_717299.1| nad4 [Ostreococcus tauri] gi|112806915|emb|CAL36421.1| unnamed protein product [Ostreococcus tauri] Length = 489 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 230/477 (48%), Positives = 333/477 (69%), Gaps = 5/477 (1%) Query: 12 LPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI 71 LP LG +LF + F AL IS + F+ SL +W FD + FQ +++ W+ Sbjct: 13 LPVLGAVGLLFFPKTAVRQMKLF--ALNISLVTFVCSLNLWIFFDNSTAKFQFVQHMDWL 70 Query: 72 DYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 ++++G+DGIS+ ++LTTFL P C+L SW+S++ RE+++AFL+LES ++ F Sbjct: 71 SVLNMNFYVGIDGISLFFMILTTFLVPVCLLISWQSVKHLVREFLVAFLLLESFMLAVFC 130 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 LD+LLFY+FFE+ LIPMF+IIGVWG ER I AAY+FFLYT GS+FML AI+++ ++ Sbjct: 131 MLDLLLFYVFFESVLIPMFLIIGVWGSRERKIRAAYQFFLYTLIGSLFMLLAILLIYFQV 190 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 T+ + L+ + +F Q ++W+AFF SFA+K+PM PFH WLP AHV+APT+GSV LAG Sbjct: 191 GTTDLQVLHTV-EFSERRQLFLWVAFFLSFAVKVPMIPFHIWLPEAHVEAPTSGSVILAG 249 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+G YG +RF +PLFP A+ YF P+I+ +S+I IIYAS ++ Q D+KK+IAYSS+A Sbjct: 250 ILLKLGTYGFLRFSIPLFPEATIYFTPLIYTMSVIGIIYASFTTLRQIDLKKIIAYSSVA 309 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG+VT+G+FS GVEGA+ MLSHG V+SALF C+G++YDR HTR I YGGLV M Sbjct: 310 HMGFVTLGLFSLNMQGVEGAVLLMLSHGFVASALFLCIGILYDRTHTRLIKYYGGLVQTM 369 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P +A +FT+ N+ LPGTS F+GEFL+++ VFQ + +A LA+ G++L YS+WLY Sbjct: 370 PLFAFFFFIFTLGNLSLPGTSSFVGEFLILVGVFQTNTFIATLAATGMILGGAYSIWLYN 429 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 +VVFG K + Q D++ RE ++ P V + GIYP ++ +++++++ Sbjct: 430 RVVFGNLKPVYINQFADINRREFFILLPFVVCIFWMGIYPSIFLESLHYSVATVLQS 486 >gi|78067034|ref|YP_369803.1| NADH dehydrogenase subunit M [Burkholderia sp. 383] gi|77967779|gb|ABB09159.1| NADH dehydrogenase subunit M [Burkholderia sp. 383] Length = 496 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 235/488 (48%), Positives = 332/488 (68%), Gaps = 11/488 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW----SVFDKGR 59 P LS +LP VF +L L G G A I+ I + L V + FD Sbjct: 5 PILSTAIWLPI--VFGLLV---LAVGNDKNPGTARWIALIGSLLGLAVTIPLITGFDSST 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 ++ Q +E WI+ F +YHLGVDGIS+ VVLT +T ++++W+ I EN +Y+ AF Sbjct: 60 AALQFVEKSTWIERFDIAYHLGVDGISMWFVVLTALITVIVVIAAWEVITENVAQYLAAF 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ M Sbjct: 120 LILSGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLM 179 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A++ + E + + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+ Sbjct: 180 LVALIYLYTETHSFDLAT-WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVE 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ+D Sbjct: 239 APTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQSD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDR+H+R Sbjct: 299 MKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIIQMISHGFVSGAMFLCIGVLYDRVHSRQ 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F ++ Sbjct: 359 IADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAFTLI 418 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A Y+LW+Y++V FG + V +LKD+ RE M+ +A T+ G+YP P D V Sbjct: 419 LGAAYTLWMYKRVYFGAVANDHVAKLKDIGRREFLMLAVLAAFTMLMGLYPKPFTDVMHV 478 Query: 479 PLSSIIEN 486 + +++ + Sbjct: 479 SVENLLSH 486 >gi|167836062|ref|ZP_02462945.1| NADH dehydrogenase subunit M [Burkholderia thailandensis MSMB43] Length = 496 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 234/490 (47%), Positives = 333/490 (67%), Gaps = 11/490 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW----SVFDK 57 + P LS +LP + V+L G G A I+ I + SL V + FD Sbjct: 3 SFPILSTAIWLPIVFGLVVL-----AVGSDKNPGAARWIALIGSLASLAVTIPLITGFDS 57 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++ Q +E WI+ F +YHLGVDGIS+ VVLT +T +++ W+ I E+ +Y+ Sbjct: 58 STAALQFVEQSTWIERFNITYHLGVDGISMWFVVLTALITVIVVIAGWEVITEHVSQYLA 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 AFL+L +++G F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 118 AFLILSGIMVGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSL 177 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML A++ + + + S + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AH Sbjct: 178 LMLVALIYL-YTQTHSFDLATWQNAKIAMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAH 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT GSV LA IMLK+G YG +RF LP+ P AS +FAP + LSLIA+IY LV+MVQ Sbjct: 237 VEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFFAPAVIALSLIAVIYIGLVAMVQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+KKL+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDRLH+ Sbjct: 297 ADMKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRLHS 356 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F Sbjct: 357 RQIADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILASVQYNFWIAFGAAFT 416 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++L A Y+LW+Y++V FG +KV +L D+S RE M+ +A T+ G+YP P D Sbjct: 417 LILGAAYTLWMYKRVYFGAVTSDKVAKLSDISRREFTMLAVLAAFTLLMGLYPKPFTDVM 476 Query: 477 SVPLSSIIEN 486 V + +++ + Sbjct: 477 HVSVENLLSH 486 >gi|167562190|ref|ZP_02355106.1| NADH dehydrogenase subunit M [Burkholderia oklahomensis EO147] gi|167569435|ref|ZP_02362309.1| NADH dehydrogenase subunit M [Burkholderia oklahomensis C6786] Length = 496 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 233/487 (47%), Positives = 335/487 (68%), Gaps = 5/487 (1%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS +LP + G+ V+ S G + +AL S ++ + + FD + Sbjct: 3 SFPILSTAIWLPIVFGLIVLAVGSDKNPGAARW--IALIGSLAGLAVTIPLITGFDSSTA 60 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q +E WI+ F +YHLGVDGIS+ VVLT +T +++ W+ I E+ +Y+ AFL Sbjct: 61 ALQFVEQTTWIERFNITYHLGVDGISMWFVVLTALITVIVVIAGWEVITEHVSQYLAAFL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ ML Sbjct: 121 ILSGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLML 180 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ + + + S + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+A Sbjct: 181 VALIYL-YTQTHSFDLATWQNAKIEMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEA 239 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT GSV LA IMLK+G YG +RF LP+ P AS +FAPV+ LSLIA+IY LV+MVQ D+ Sbjct: 240 PTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFFAPVVIALSLIAVIYIGLVAMVQADM 299 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKL+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDRLH+R I Sbjct: 300 KKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRLHSRQI 359 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F ++L Sbjct: 360 ADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQFNFWIAFGAAFTLIL 419 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 A Y+LW+Y++V FG + V +LKD+S RE M+ +A T+ G+YP P D V Sbjct: 420 GAAYTLWMYKRVYFGAVANDHVAKLKDISRREFVMLAVLAAFTMLMGLYPKPFTDVMHVS 479 Query: 480 LSSIIEN 486 + +++ + Sbjct: 480 VENLLSH 486 >gi|254247669|ref|ZP_04940990.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia cenocepacia PC184] gi|124872445|gb|EAY64161.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia cenocepacia PC184] Length = 496 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 235/488 (48%), Positives = 331/488 (67%), Gaps = 11/488 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW----SVFDKGR 59 P LS +LP VF +L L G G A I+ I + L V + FD Sbjct: 5 PILSTAIWLPI--VFGLLV---LAVGNDKNPGTARWIALIGALLGLAVTIPLITGFDSST 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 ++ Q +E WI+ F +YHLGVDGIS+ VVLT +T ++++W+ I EN +Y+ AF Sbjct: 60 AALQFVEKSTWIERFDIAYHLGVDGISMWFVVLTALITVIVVIAAWEVITENVAQYLAAF 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ M Sbjct: 120 LILSGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLM 179 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A++ + E + + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+ Sbjct: 180 LVALIYLYTETHSFDLAT-WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVE 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D Sbjct: 239 APTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQAD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDR+H+R Sbjct: 299 MKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIIQMISHGFVSGAMFLCIGVLYDRVHSRQ 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F ++ Sbjct: 359 IADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAFTLI 418 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A Y+LW+Y++V FG + V +LKD+ RE M+ +A T+ G+YP P D V Sbjct: 419 LGAAYTLWMYKRVYFGAVANDHVAKLKDIGRREFLMLAVLAAFTLLMGLYPKPFTDVMHV 478 Query: 479 PLSSIIEN 486 + +++ + Sbjct: 479 SVENLLSH 486 >gi|221199668|ref|ZP_03572712.1| NADH dehydrogenase I, M subunit [Burkholderia multivorans CGD2M] gi|221205432|ref|ZP_03578447.1| NADH dehydrogenase I, M subunit [Burkholderia multivorans CGD2] gi|221174270|gb|EEE06702.1| NADH dehydrogenase I, M subunit [Burkholderia multivorans CGD2] gi|221180953|gb|EEE13356.1| NADH dehydrogenase I, M subunit [Burkholderia multivorans CGD2M] Length = 496 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 236/488 (48%), Positives = 331/488 (67%), Gaps = 11/488 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW----SVFDKGR 59 P LS +LP VF +L L G G A I+ I + L V + FD Sbjct: 5 PILSTAIWLPI--VFGLLV---LAVGNDKNPGPARWIALIGSLLGLAVTIPLITGFDAST 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 ++ Q +E WI+ F SYHLGVDGIS+ VVLT +T ++++W+ I EN +Y+ AF Sbjct: 60 AALQFVEQSTWIERFKISYHLGVDGISMWFVVLTALITVIVVIAAWEVITENVAQYLAAF 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ M Sbjct: 120 LILSGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLM 179 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A++ + E + + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+ Sbjct: 180 LVALIYLYTETHSFDLAT-WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVE 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D Sbjct: 239 APTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQAD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDR+H+R Sbjct: 299 MKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRVHSRQ 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F ++ Sbjct: 359 IADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAFTLI 418 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A Y+LW+Y++V FG + V +LKD+ RE M+ +A T+ G+YP P D V Sbjct: 419 LGAAYTLWMYKRVYFGAVANDHVAKLKDIGRREFLMLAVLAAFTLLMGLYPKPFTDVMHV 478 Query: 479 PLSSIIEN 486 + +++ + Sbjct: 479 SVENLLSH 486 >gi|107023176|ref|YP_621503.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia AU 1054] gi|116690258|ref|YP_835881.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia HI2424] gi|170733597|ref|YP_001765544.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia MC0-3] gi|206560691|ref|YP_002231456.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia J2315] gi|105893365|gb|ABF76530.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia AU 1054] gi|116648347|gb|ABK08988.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia HI2424] gi|169816839|gb|ACA91422.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia cenocepacia MC0-3] gi|198036733|emb|CAR52633.1| NADH dehydrogenase I chain M [Burkholderia cenocepacia J2315] Length = 496 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 234/488 (47%), Positives = 331/488 (67%), Gaps = 11/488 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW----SVFDKGR 59 P LS +LP VF +L L G G A ++ I + L V + FD Sbjct: 5 PILSTAIWLPI--VFGLLV---LAVGNDKNPGTARWVALIGALLGLAVTIPLITGFDSST 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 ++ Q +E WI+ F +YHLGVDGIS+ VVLT +T ++++W+ I EN +Y+ AF Sbjct: 60 AALQFVEKSTWIERFDIAYHLGVDGISMWFVVLTALITVIVVIAAWEVITENVAQYLAAF 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ M Sbjct: 120 LILSGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLM 179 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A++ + E + + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+ Sbjct: 180 LVALIYLYTETHSFDLAT-WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVE 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D Sbjct: 239 APTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQAD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDR+H+R Sbjct: 299 MKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIIQMISHGFVSGAMFLCIGVLYDRVHSRQ 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F ++ Sbjct: 359 IADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAFTLI 418 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A Y+LW+Y++V FG + V +LKD+ RE M+ +A T+ G+YP P D V Sbjct: 419 LGAAYTLWMYKRVYFGAVANDHVAKLKDIGRREFLMLAVLAAFTLLMGLYPKPFTDVMHV 478 Query: 479 PLSSIIEN 486 + +++ + Sbjct: 479 SVENLLSH 486 >gi|254251873|ref|ZP_04945191.1| NADH dehydrogenase subunit M [Burkholderia dolosa AUO158] gi|124894482|gb|EAY68362.1| NADH dehydrogenase subunit M [Burkholderia dolosa AUO158] Length = 496 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 231/485 (47%), Positives = 333/485 (68%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS +LP + G+ V+ + G + VAL S + ++ + + FD ++ Sbjct: 5 PILSTAIWLPIVFGLLVLAVGNDKNPGAARW--VALIGSLLGLAVTIPLITGFDSSTAAL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E+ WI+ F SYHLGVDGIS+ VVLT +T ++++W+ I EN +Y+ AFL+L Sbjct: 63 QFVEHSTWIERFDISYHLGVDGISMWFVVLTALITVIVVIAAWEVITENVAQYLAAFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + E + + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LIYLYTETHSFDLAT-WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDR+H+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRVHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F ++L A Sbjct: 362 YGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAFTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V +L D+ RE M+ +A T+ G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAVANDHVAKLTDIGRREFLMLAVLAAFTLLMGLYPKPFTDVMHVSVE 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLSH 486 >gi|161524216|ref|YP_001579228.1| NADH dehydrogenase subunit M [Burkholderia multivorans ATCC 17616] gi|189351027|ref|YP_001946655.1| NADH dehydrogenase subunit M [Burkholderia multivorans ATCC 17616] gi|221211747|ref|ZP_03584726.1| NADH dehydrogenase I, M subunit [Burkholderia multivorans CGD1] gi|160341645|gb|ABX14731.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia multivorans ATCC 17616] gi|189335049|dbj|BAG44119.1| NADH dehydrogenase I chain M [Burkholderia multivorans ATCC 17616] gi|221169108|gb|EEE01576.1| NADH dehydrogenase I, M subunit [Burkholderia multivorans CGD1] Length = 496 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 236/488 (48%), Positives = 331/488 (67%), Gaps = 11/488 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW----SVFDKGR 59 P LS +LP VF +L L G G A I+ I + L V + FD Sbjct: 5 PILSTAIWLPI--VFGLLV---LAVGNDKNPGPARWIALIGSLLGLAVTIPLITGFDAST 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 ++ Q +E WI+ F SYHLGVDGIS+ VVLT +T ++++W+ I EN +Y+ AF Sbjct: 60 AALQFVEQSTWIERFQISYHLGVDGISMWFVVLTALITVIVVIAAWEVITENVAQYLAAF 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ M Sbjct: 120 LILSGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLM 179 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A++ + E + + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+ Sbjct: 180 LVALIYLYTETHSFDLAT-WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVE 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D Sbjct: 239 APTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQAD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDR+H+R Sbjct: 299 MKKLVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRVHSRQ 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F ++ Sbjct: 359 IADYGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAFTLI 418 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A Y+LW+Y++V FG + V +LKD+ RE M+ +A T+ G+YP P D V Sbjct: 419 LGAAYTLWMYKRVYFGAVANDHVAKLKDIGRREFLMLAVLAAFTLLMGLYPKPFTDVMHV 478 Query: 479 PLSSIIEN 486 + +++ + Sbjct: 479 SVENLLSH 486 >gi|11467100|ref|NP_054401.1| NADH dehydrogenase subunit 4 [Marchantia polymorpha] gi|464242|sp|P26848|NU4M_MARPO RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|786185|gb|AAC09398.1| nad4 [Marchantia polymorpha] Length = 495 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 228/454 (50%), Positives = 319/454 (70%), Gaps = 3/454 (0%) Query: 35 GVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTT 93 G+ + S I F++SLF W F+ + FQ +E W+ Y ++++G+DGIS+ V+LTT Sbjct: 39 GITIWTSLITFLYSLFFWIRFENDTAKFQFVETIRWLPYSNINFYIGIDGISLFFVILTT 98 Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 FLTP CIL + S++ +EYMIAF + ES +I F SLD+L+FY+FFE+ LIPMF+IIG Sbjct: 99 FLTPICILVGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPMFIIIG 158 Query: 154 VWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMW 212 VWG +R I AAY+FFLYT GS+FML AI+ + ++ T+ + + ++F Q +W Sbjct: 159 VWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTD-LQILLTTEFSERRQILLW 217 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 IAFF SF++K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +P+FP A+ Sbjct: 218 IAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATL 277 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 YF P I+ LS+IAIIY SL ++ Q D+KK+IAYSS+AHM +VTIG+FS G+EG++ Sbjct: 278 YFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILL 337 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 MLSHGLVSSALF CVG +YDR TR + YGGLV MP ++ + + FT+ANM LPGTS F Sbjct: 338 MLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSF 397 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 IGEFL+++ FQ ++ VA LA+ G++L A YSLWLY +VVFG K + + DL+ RE Sbjct: 398 IGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREV 457 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V ++ G+YP + +S+++++ Sbjct: 458 LIFLPFIVGVIWMGVYPEVFLECMHTSVSNLVQH 491 >gi|11466666|ref|NP_066349.1| NADH dehydrogenase subunit 4 [Malawimonas jakobiformis] gi|10178704|gb|AAG13716.1|AF295546_42 NADH dehydrogenase subunit 4 [Malawimonas jakobiformis] Length = 486 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 222/466 (47%), Positives = 322/466 (69%), Gaps = 7/466 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L I P +G+ ++LF + + R+ + L + I FI S+ +W +FD S +Q + Sbjct: 7 LLITLIFPLIGIILLLFVNDISAIRK----ITLNTTIITFILSIVLWILFDNTTSKYQFL 62 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 I + +Y++G+DGISI ++LTTFL P CIL+SW SI+ REYMI FL+LE++ Sbjct: 63 LKIELIPFLNLNYYIGIDGISIFFLILTTFLVPICILASWNSIRHYVREYMILFLLLETL 122 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIV 183 ++ F +D++LFYIFFE+ LIPMF+IIG+WG ER I+AA++FFLYT GS+FMLFAI+ Sbjct: 123 MMNVFCVIDIILFYIFFESVLIPMFLIIGIWGARERKIHAAFQFFLYTLLGSLFMLFAIL 182 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 ++ + T+ + +++F + Q +W+AFF SFA+K+PM P H WLP AHV+APTAG Sbjct: 183 IIYFNTGTTDF-KVLLVTEFSRNRQLLLWLAFFISFAVKVPMVPVHIWLPEAHVEAPTAG 241 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI+LK+G YG +RF L LFP A+ Y+ P+++ + +IAIIY SL ++ Q D+KK+I Sbjct: 242 SVILAGILLKLGTYGLLRFSLTLFPDANIYYIPLVYTMGVIAIIYTSLTTLRQIDLKKII 301 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM +V +G+FS +EG++ MLSHG VSSALF C+GV+YDR HTR + Y Sbjct: 302 AYSSVAHMNFVILGLFSLNIEAIEGSILLMLSHGFVSSALFLCIGVLYDRHHTRIVRYYS 361 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ MP ++ + + FT+AN+ LP TS FIGEFL++++VFQN+ ++ +LAS G++L A Y Sbjct: 362 GITLTMPIFSTLFLFFTLANISLPTTSSFIGEFLILLAVFQNNTSICILASTGIILGAAY 421 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++WLY +V FG + DL LRE + P VL + GIYP Sbjct: 422 AIWLYNRVAFGNININYINPFNDLYLREFAIFIPFVVLILLMGIYP 467 >gi|254524823|ref|ZP_05136878.1| NADH-ubiquinone oxidoreductase Nqo13 subunit [Stenotrophomonas sp. SKA14] gi|219722414|gb|EED40939.1| NADH-ubiquinone oxidoreductase Nqo13 subunit [Stenotrophomonas sp. SKA14] Length = 502 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 234/488 (47%), Positives = 331/488 (67%), Gaps = 22/488 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P LS++ +LP LG +IL R + +LG++ + F+ SL + S ++ G Sbjct: 3 NWPLLSVLIWLPILGGALILAIRDAQTARWA----SLGVAVLTFVASLSLLSGYNAGIDG 58 Query: 62 FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E + WI Y Y+LGVDGI++ L++LTT ++ ++ +W +I + +Y+ AFL+ Sbjct: 59 LQFVETHAWIPAYKIGYNLGVDGIAVALILLTTLVSVLALIGAWSAIDKRVNQYVAAFLI 118 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + +G F + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML Sbjct: 119 LEGVTVGIFSATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAALKFFLYTFLGSVLMLV 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A++ + + + + DLYA+ P S Q W++ AF +FA+K+PMFP HTWLP+AHV+ Sbjct: 179 ALIYLYLKGGSFQLADLYAL---PLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVE 235 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LA I LK+GGYG +RF LP+ P ASQ +A ++ LSLIA+IY LV++VQ D Sbjct: 236 APTAGSVILAAIALKIGGYGFLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDD 295 Query: 299 IKKLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFC 346 +KKLIAYSSIAHMG+VT+G F + G++GAM QM+SHG VS A+F C Sbjct: 296 MKKLIAYSSIAHMGFVTLGTFIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSC 355 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 VGV+YDR+H+R I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI+S FQ + Sbjct: 356 VGVLYDRMHSRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILSAFQRN 415 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 +A+ A+ +++ A Y+LWLY+++ FG V +LKD++ RE ++ A+ + G Sbjct: 416 PWIALGAATTLIIGAAYTLWLYKRIFFGEVANSHVAELKDINGREWLVLGVFAIGVLALG 475 Query: 467 IYPVPIRD 474 IYP P+ D Sbjct: 476 IYPKPLTD 483 >gi|78224533|ref|YP_386280.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter metallireducens GS-15] gi|78195788|gb|ABB33555.1| NADH dehydrogenase subunit M [Geobacter metallireducens GS-15] Length = 519 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 229/493 (46%), Positives = 336/493 (68%), Gaps = 10/493 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P +S++TFLP LGV ++ F + G+AL ++ F+ SL + + F + + FQ Sbjct: 5 PLISVMTFLPLLGVVLLFFVPKQSHSAQR--GLALLVALATFVVSLPLVTGF-QSNAEFQ 61 Query: 64 MIEYYHWI---DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 +E WI Y +YH+ +DGIS+ LV+LTTF+ P ILS+W +++ +EYMI L+ Sbjct: 62 FVEKVPWIAAGPYQMNYHVAIDGISLWLVILTTFIVPIAILSTWTAVENKVKEYMICLLL 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE ++GAF+SLD+ LFYIF+E LIPM+ IIG+WGG +IYAA KFF+YT GS+ ML Sbjct: 122 LEVGMLGAFVSLDLFLFYIFWEVMLIPMYFIIGIWGGKNKIYAALKFFIYTMVGSLLMLI 181 Query: 181 AIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A+VV+ ++ S++ Y ++ P + Q WM++AF +FAIK+PMFP HTWLP+AH + Sbjct: 182 ALVVLYFKGGAGDFSVLRFYDLALDP-ATQTWMFLAFALAFAIKVPMFPLHTWLPDAHTE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LA ++LKMG YG +RF +PLFP A+ F P+ LS+I I+YA+LV+MVQ D Sbjct: 241 APTAGSVILAAVLLKMGTYGFVRFAMPLFPDATAQFTPLFAVLSVIGIVYAALVAMVQED 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSS+AH+GYV +G+F+ + G+ G M QML+HG+ + ALF VG IY+R HTR Sbjct: 301 VKKLVAYSSVAHLGYVMLGVFALNQQGLSGGMIQMLNHGVSTGALFLIVGFIYERRHTRL 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-NTVAVLASFGV 417 I +GGL MP +A + M+ T++++GLPGT+GF+GEFL+++ +++ AV+ + GV Sbjct: 361 ITDFGGLAKQMPVFATIFMIVTLSSIGLPGTNGFVGEFLILIGAYESELRWYAVIGTSGV 420 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +LSA+Y LW++++V+FG K Q L DL+ RE ++ P+ VL G+YP P D S Sbjct: 421 ILSAVYMLWMFQRVMFGELNNPKNQTLTDLNAREVVIMLPLLVLIFVMGVYPTPFIDKMS 480 Query: 478 VPLSSIIENYTLK 490 L +I + K Sbjct: 481 PSLEKLIVHVKSK 493 >gi|190575266|ref|YP_001973111.1| NADH dehydrogenase subunit M [Stenotrophomonas maltophilia K279a] gi|190013188|emb|CAQ46821.1| putative NADH dehydrogenase I chain M [Stenotrophomonas maltophilia K279a] Length = 502 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 233/488 (47%), Positives = 331/488 (67%), Gaps = 22/488 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P LS++ +LP +G +IL R + +LG++ + F+ SL + S ++ G Sbjct: 3 NWPLLSVLIWLPIIGGALILAIRDAQTARWA----SLGVAVLTFVASLSLLSGYNAGIDG 58 Query: 62 FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E + WI Y Y+LGVDGI++ L++LTT ++ ++ +W +I + +Y+ AFL+ Sbjct: 59 LQFVETHAWIPAYKIGYNLGVDGIAVALILLTTLVSVLALIGAWSAIDKRVNQYVAAFLI 118 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + +G F + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML Sbjct: 119 LEGVTVGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAALKFFLYTFLGSVLMLV 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A++ + + + + DLYA+ P S Q W++ AF +FA+K+PMFP HTWLP+AHV+ Sbjct: 179 ALIYLYMKGGSFQLADLYAL---PLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVE 235 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LA I LK+GGYG +RF LP+ P ASQ +A ++ LSLIA+IY LV++VQ D Sbjct: 236 APTAGSVILAAIALKIGGYGFLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDD 295 Query: 299 IKKLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFC 346 +KKLIAYSSIAHMG+VT+G F + G++GAM QM+SHG VS A+F C Sbjct: 296 MKKLIAYSSIAHMGFVTLGTFIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSC 355 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 VGV+YDR+H+R I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI+S FQ + Sbjct: 356 VGVLYDRMHSRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILSAFQRN 415 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 +A+ A+ +++ A Y+LWLY+++ FG V +LKD++ RE ++ A+ + G Sbjct: 416 PWIALGAATTLIIGAAYTLWLYKRIFFGEVANSHVAELKDINGREWLVLGVFAIGVLALG 475 Query: 467 IYPVPIRD 474 IYP P+ D Sbjct: 476 IYPKPLTD 483 >gi|229587155|ref|YP_002845656.1| NADH dehydrogenase subunit M [Rickettsia africae ESF-5] gi|228022205|gb|ACP53913.1| NADH dehydrogenase I chain M [Rickettsia africae ESF-5] Length = 493 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 231/492 (46%), Positives = 341/492 (69%), Gaps = 5/492 (1%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDK 57 + LP +SI FLP + V +++LF S + + VA+ S + FI ++++ FD Sbjct: 2 LELPIISISIFLPLISVLYILLFISQSKKADKPIYVMYVAVLSSVLTFISTIYILIEFDS 61 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++Q +E Y W+D +H+GVDGISI VVLT+FLT CI+ S ++++ +EY++ Sbjct: 62 SNPAYQFVERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLV 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL++ES IGAF S+++LLFY+FFEA L+PM++IIGVWGG RIYAA KFFLYTFFGS+ Sbjct: 122 CFLLMESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSV 181 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F L +++ + + + + ++ ++ P Q +W A F +FA+KIP+ PFHTWLP+A Sbjct: 182 FFLLSLIYIYSKMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDA 241 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAPT+GSV LAGI+LK+GGYG +R LLPL P SQ FA + +LS+IAIIYASLV++ Sbjct: 242 HVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSIIAIIYASLVALA 301 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KK+IAYSSIAHMGYVTIGIFS K+GV GA+FQMLSHG++SS LF VG +Y+RLH Sbjct: 302 QKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLH 361 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 T++I YGG+ MP A M+ + ++GLPGTSGFIGEFL ++ +++ + +A+ Sbjct: 362 TKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAAL 421 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++ A+Y L LY++V+ G +++ +DL E + P+ +L ++FG+ P I + Sbjct: 422 GIIFGAVYMLKLYKEVMLGEITNKEIMHFRDLYKYEIISIAPLILLIIYFGLMPSSILNV 481 Query: 476 FSVPLSSIIENY 487 FS+ + +++ + Sbjct: 482 FSLSVGNLLVKF 493 >gi|157829059|ref|YP_001495301.1| NADH dehydrogenase subunit M [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933785|ref|YP_001650574.1| NADH:ubiquinone oxidoreductase subunit M [Rickettsia rickettsii str. Iowa] gi|157801540|gb|ABV76793.1| NADH dehydrogenase subunit M [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908872|gb|ABY73168.1| NADH-quinone oxidoreductase chain M [Rickettsia rickettsii str. Iowa] Length = 493 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 231/492 (46%), Positives = 340/492 (69%), Gaps = 5/492 (1%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFF--GVALGISTINFIFSLFVWSVFDK 57 + LP +SI FLP + V +++LF S + + VA+ S + FI ++++ FD Sbjct: 2 LELPIISISIFLPLISVLYILLFISQSKKADKPIYIMYVAVLSSVLTFISTIYILIEFDS 61 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++Q +E Y W+D +H+GVDGISI VVLT+FLT CI+ S ++++ +EY++ Sbjct: 62 SNPAYQFVERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLV 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL++ES IGAF S+++LLFY+FFEA L+PM++IIGVWGG RIYAA KFFLYTFFGS+ Sbjct: 122 CFLLMESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSV 181 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F L +++ + + + + L+ ++ P Q +W A F +FA+KIP+ PFHTWLP+ Sbjct: 182 FFLLSLIYIYSKMHSFDLTYLFQLTDNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDT 241 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAPT+GSV LAGI+LK+GGYG +R LLPL P SQ FA + +LS+IAIIYASLV++ Sbjct: 242 HVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVLYLSVIAIIYASLVALA 301 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KK+IAYSSIAHMGYVTIGIFS K+GV GA+FQMLSHG++SS LF VG +Y+RLH Sbjct: 302 QKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLH 361 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 T++I YGG+ MP A M+ + ++GLPGTSGFIGEFL ++ +++ + +A+ Sbjct: 362 TKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAAL 421 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++ A+Y L LY++V+ G +++ +DL E + P+ +L ++FG+ P I + Sbjct: 422 GIIFGAVYMLKLYKEVMLGEITNKEIMHFRDLYKYEIISIAPLILLIIYFGLMPSSILNV 481 Query: 476 FSVPLSSIIENY 487 FS+ + +++ + Sbjct: 482 FSLSVENLLVKF 493 >gi|229315902|ref|YP_002860128.1| NADH dehydrogenase subunit 4 [Micromonas sp. RCC299] gi|226431187|gb|ACO55592.1| NADH dehydrogenase subunit 4 [Micromonas sp. RCC299] Length = 488 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 228/458 (49%), Positives = 322/458 (70%), Gaps = 3/458 (0%) Query: 31 RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLV 89 R+ +AL IS INF+ + +W VFD + FQ +E+ W+ +F + ++G+DGIS+ + Sbjct: 27 RAIKIIALCISLINFVVASGLWIVFDNSTAKFQFVEHIGWLPFFNMNAYIGIDGISLFFI 86 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 VLTTFL P C+L W +I ++ +EY +AFL+LE+ ++ F LD+LLFY+FFE+ L+PMF Sbjct: 87 VLTTFLVPVCLLVGWVNISKHVKEYCLAFLILETCMLAVFCMLDLLLFYVFFESVLLPMF 146 Query: 150 VIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ 208 +IIGVWG R I AAY+FFLYT GS+ ML AI+++ ++ T+ + + +S+F Q Sbjct: 147 LIIGVWGSRARKIRAAYQFFLYTLVGSVLMLLAILLIYFQVGTTD-LQVLLVSEFSERRQ 205 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 +W+AFF SFA+K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +PLFP Sbjct: 206 LLLWLAFFASFAVKVPMVPLHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPLFP 265 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 AS YF P+I+ +S+I I+YASL ++ Q D+KK+IAYSS+AHMG+VTIG+FS GVEG Sbjct: 266 EASLYFTPLIYTMSIIGIVYASLTTLRQIDLKKIIAYSSVAHMGFVTIGLFSLNVQGVEG 325 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 A+ MLSHG V+SALF CVG +YDR HTR I YGGLVH MP ++ +VFTM N+ LPG Sbjct: 326 AILLMLSHGFVASALFLCVGTLYDRTHTRLIQYYGGLVHIMPLFSFFFLVFTMGNLSLPG 385 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 TS F+GEFL+++ FQ + +A LA+ G++L YS+WLY +VVFG K + D++ Sbjct: 386 TSSFVGEFLILVGTFQTNTWIATLAATGMILGGAYSIWLYNRVVFGNLKPLYISMGSDVN 445 Query: 449 LRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 RE + P + ++ G YP D V +S++I++ Sbjct: 446 RREFWIFVPFVLAILWMGFYPQVFLDPMHVSVSNVIQH 483 >gi|34581180|ref|ZP_00142660.1| NADH dehydrogenase I chain M [Rickettsia sibirica 246] gi|28262565|gb|EAA26069.1| NADH dehydrogenase I chain M [Rickettsia sibirica 246] Length = 493 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 231/492 (46%), Positives = 341/492 (69%), Gaps = 5/492 (1%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFF--GVALGISTINFIFSLFVWSVFDK 57 + LP +SI FLP + V +++LF S + + VA+ S + FI ++++ FD Sbjct: 2 LELPIISISIFLPLISVLYILLFISQSKKADKPIYLMYVAVLSSVLTFISTIYILIEFDS 61 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++Q +E Y W+D +H+GVDGISI VVLT+FLT CI+ S ++++ +EY++ Sbjct: 62 SNPAYQFVERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTIICIIGSLFTVKKYIKEYLV 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL++ES IGAF S+++LLFY+FFEA L+PM++IIGVWGG RIYAA KFFLYTFFGS+ Sbjct: 122 CFLLMESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSV 181 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F L +++ + + + + ++ ++ P Q +W A F +FAIKIP+ PFHTWLP+A Sbjct: 182 FFLLSLIYIYSKMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAIKIPIIPFHTWLPDA 241 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAPT+GSV LAGI+LK+GGYG +R LLPL P SQ FA + +LS+IAIIYASLV++ Sbjct: 242 HVQAPTSGSVILAGILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALA 301 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KK+IAY+SIAHMGYVTIGIFS K+GV GA+FQMLSHG++SS LF VG +Y+RLH Sbjct: 302 QKDMKKMIAYASIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLH 361 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 T++I YGG+ MP A M+ + ++GLPGTSGFIGEFL ++ +++ + +A+ Sbjct: 362 TKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAAL 421 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++ A+Y L LY++V+ G +++ +DL E + P+ +L ++FG+ P I + Sbjct: 422 GIIFGAVYMLKLYKEVMLGEITNKEIMHFRDLYKYEIISIAPLILLIIYFGLMPSSILNV 481 Query: 476 FSVPLSSIIENY 487 FS+ + +++ + Sbjct: 482 FSLSVGNLLVKF 493 >gi|238650813|ref|YP_002916668.1| NADH dehydrogenase subunit M [Rickettsia peacockii str. Rustic] gi|238624911|gb|ACR47617.1| NADH dehydrogenase subunit M [Rickettsia peacockii str. Rustic] Length = 493 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 230/492 (46%), Positives = 341/492 (69%), Gaps = 5/492 (1%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDK 57 + LP +SI FLP + V +++LF S + + VA+ S + FI ++++ FD Sbjct: 2 LELPIISISIFLPLISVLYILLFISQSKKADKPIYVMYVAVLSSVLTFISTIYILIEFDS 61 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++Q +E Y W+D +H+GVDGISI VVLT+FLT CI+ S ++++ +EY++ Sbjct: 62 SNPAYQFVERYAWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLV 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL++ES+ IGAF S+++LLFY+FFEA L+PM++IIGVWGG RIYAA KFFLYTFFGS+ Sbjct: 122 CFLLMESLCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGKNRIYAALKFFLYTFFGSL 181 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F L +++ + + + + ++ ++ P Q +W A F +FA+KIP+ PFHTWLP+A Sbjct: 182 FFLLSLIYIYSKMHSFDLTYIFQLTDNIPLFAQQILWWAIFIAFAVKIPIIPFHTWLPDA 241 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAPT+GSV LA I+LK+GGYG +R LLPL P SQ FA + +LS+IAIIYASLV++ Sbjct: 242 HVQAPTSGSVILASILLKLGGYGFLRVLLPLCPSVSQEFAIYVIYLSVIAIIYASLVALA 301 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KK+IAYSSIAHMGYVTIGIFS K+GV GA+FQMLSHG++SS LF VG +Y+RLH Sbjct: 302 QKDMKKMIAYSSIAHMGYVTIGIFSFTKAGVSGAIFQMLSHGVISSCLFLIVGTLYERLH 361 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 T++I YGG+ MP A M+ + ++GLPGTSGFIGEFL ++ +++ + +A+ Sbjct: 362 TKEIAKYGGVASKMPVLAAFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVVATFIAAL 421 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++ A+Y L LY++V+ G +++ +DL E + P+ +L ++FG+ P I + Sbjct: 422 GIIFGAVYMLKLYKEVMLGEITNKEIMHFRDLYKYEIISIAPLILLIIYFGLMPSSILNV 481 Query: 476 FSVPLSSIIENY 487 FS+ + +++ + Sbjct: 482 FSLSVENLLVKF 493 >gi|51473961|ref|YP_067718.1| NADH dehydrogenase subunit M [Rickettsia typhi str. Wilmington] gi|81389939|sp|Q68VV6|NUOM_RICTY RecName: Full=NADH-quinone oxidoreductase subunit M; AltName: Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1 subunit M gi|51460273|gb|AAU04236.1| NADH dehydrogenase (ubiquinone) subunit M [Rickettsia typhi str. Wilmington] Length = 494 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 230/496 (46%), Positives = 340/496 (68%), Gaps = 10/496 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILF--SSYLGCGRRSFF--GVALGISTINFIFSLFVWSVFD 56 + LP +SI FLP + V IL + + + + VA+ S + FI ++++ FD Sbjct: 2 LELPIISITIFLPLISVLYILLFINQSKKANKLNIYVAMVAMLSSVLTFILTIYILIEFD 61 Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 ++Q +E Y W+D +H+G+DGI+I VVLT+FLT CI+ S +I++ +EY+ Sbjct: 62 ASNHTYQFVERYTWLDKIGLEFHVGIDGIAIFFVVLTSFLTLICIIGSIFTIKKYIKEYL 121 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 + FL++ES IGAF ++++LLFY+FFEA L+PM++IIGVWGG RIYAA KFFLYTFFGS Sbjct: 122 VCFLLMESFCIGAFTAVNLLLFYLFFEAILVPMYIIIGVWGGDNRIYAALKFFLYTFFGS 181 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 +F L A++ + + + + + A+++ P Q +W F +FA+KIPM PFHTWLP+ Sbjct: 182 VFFLLALIYIYSKIHSFDLTYILALTENIPLFAQKILWWTIFIAFAVKIPMIPFHTWLPD 241 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHVQAPT+GSV LAGI+LK+G YG +R LLPL P SQ FA + +LS+IAIIY+SLV++ Sbjct: 242 AHVQAPTSGSVILAGILLKLGSYGFLRVLLPLLPNVSQEFAIYVIYLSVIAIIYSSLVAL 301 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q DIK++IAYSSIAHMGYVTIGIFS ++G+ GA+FQMLSHG+VSS+LF VG +Y+RL Sbjct: 302 AQKDIKQMIAYSSIAHMGYVTIGIFSFTETGISGAIFQMLSHGVVSSSLFLIVGTLYERL 361 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 HT++I YGG+ MP A M+ ++++GLP TSGFIGEFL ++ +++ + A +A+ Sbjct: 362 HTKEIAKYGGVASKMPVLATFFMITMLSSIGLPSTSGFIGEFLSLLGIYKVNVVAACIAA 421 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 G++L A+Y L LY++V+ G +++ KDL E + P+ ++ ++FG+ P I + Sbjct: 422 LGIILGAVYMLKLYKEVMLGEITNTEIKHFKDLYRYEILSIAPLILIIIYFGLMPNSILN 481 Query: 475 TFSVPLSSIIENYTLK 490 F + +EN +K Sbjct: 482 VFHLS----VENLLIK 493 >gi|288942122|ref|YP_003444362.1| proton-translocating NADH-quinone oxidoreductase subunit M [Allochromatium vinosum DSM 180] gi|288897494|gb|ADC63330.1| proton-translocating NADH-quinone oxidoreductase, chain M [Allochromatium vinosum DSM 180] Length = 524 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 242/501 (48%), Positives = 342/501 (68%), Gaps = 19/501 (3%) Query: 1 MN-LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKG 58 MN LP L++ +LP +G V+L S G ++ AL + + F+ SL +W FD Sbjct: 1 MNALPLLTLTIWLPIIGGLVVLAS---GDQEKTLSKWTALAFAVLTFMVSLGLWIGFDST 57 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + Q +E WI F Y LGVDG+S+ L+VLTTF++ F I++ W I+ +YM A Sbjct: 58 TAEMQFVERAPWIPTFNVEYFLGVDGLSMPLIVLTTFISIFVIIAGWDVIRYKPSQYMAA 117 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL++E +++G F +LD +LFY+F+EA LIPMF+IIGVWGG R+YA KFF+YTF GS+F Sbjct: 118 FLIMEGIMVGVFSALDAVLFYVFWEAMLIPMFIIIGVWGGPNRVYATIKFFIYTFLGSVF 177 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML A++ M ++ + SI+D +A+ + + Q ++IAFF +FA+K+PMFP HTWLP+AHV Sbjct: 178 MLVALIYMYFQSGSFSILDFHAL-ELGMTAQTLIFIAFFLAFAVKVPMFPVHTWLPDAHV 236 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APT GSV LA IMLK+GGYG +RF LP+ P AS A VI LSLIAI+Y V++VQ Sbjct: 237 EAPTGGSVILAAIMLKIGGYGFLRFSLPITPDASADLAWVIIALSLIAIVYIGFVALVQQ 296 Query: 298 DIKKLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFF 345 D+KKLIAYSSIAHMG+VT+G F G G+EG M QM+SHG +S ALF Sbjct: 297 DMKKLIAYSSIAHMGFVTLGFFIVFSLALNPSVTGGAVMGIEGGMVQMISHGFISGALFL 356 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 CVGV+YDR+H+R+I YGG+++ MP + M+ F MAN GLPGTSGF+GEF+VI++ F+ Sbjct: 357 CVGVLYDRVHSREIADYGGVINTMPWFGAFMVYFAMANAGLPGTSGFVGEFMVILATFKA 416 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 S A+LA+ ++L+A ++LW+ ++VVFG K EKV L DL LRER + +A + + F Sbjct: 417 SFWWALLAATTLILAAAFTLWMVKRVVFGEVKNEKVAALADLDLRERINLGVLAAVVLLF 476 Query: 466 GIYPVPIRDTFSVPLSSIIEN 486 G++P P+ + V + +++E Sbjct: 477 GLWPAPLVNVMHVTIENLVEQ 497 >gi|197120275|ref|YP_002140702.1| NADH dehydrogenase I subunit M [Geobacter bemidjiensis Bem] gi|197089635|gb|ACH40906.1| NADH dehydrogenase I, M subunit [Geobacter bemidjiensis Bem] Length = 535 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 236/498 (47%), Positives = 342/498 (68%), Gaps = 12/498 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 LP LSI+TF P +G ++LF + G VA+ ++ + F+ SL + + ++ + Sbjct: 3 QLPLLSILTFTPLIGAILLLFVNKNSHG--VLRTVAMAVTVVTFVLSLPLITGYNAPGTD 60 Query: 62 ---FQMIEYYHWI---DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 FQ IE WI + SYHLG+DGIS+ LV+LTTF+ P ILS++ +++E +EYM Sbjct: 61 IGGFQFIENVPWIAAGPFQMSYHLGIDGISLWLVILTTFIMPISILSTYTAVEEKVKEYM 120 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 I L+LE +IG F+SLD+ LFYI++E LIPM+ +IG+WGG RIYAA KFF+YT GS Sbjct: 121 ICLLLLEVGMIGTFISLDLFLFYIYWEVMLIPMYFMIGIWGGKNRIYAAVKFFIYTAVGS 180 Query: 176 IFMLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 + ML A++ + ++ SII + ++ P + Q WM++AF +FAIK+PMFP HTWLP Sbjct: 181 LLMLVALISLYFKAGGGDFSIIRFWELNLDP-TTQMWMFLAFALAFAIKVPMFPLHTWLP 239 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH +APTAGSV LA +MLK G YG +RF +PLFP AS F P+I LS+I IIYASLV+ Sbjct: 240 DAHTEAPTAGSVILAAVMLKCGTYGYVRFAMPLFPEASAQFTPLIATLSVIGIIYASLVA 299 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 MVQ D+KKL+AYSS+AH+G+V +G+++ GV G M QML+HG+ + ALF VG IY+R Sbjct: 300 MVQQDVKKLVAYSSVAHLGFVMLGLYALNTQGVTGGMLQMLNHGVSTGALFLIVGFIYER 359 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-NTVAVL 412 HTR I +GGL MP +A + M+ T +++GLPGT+GF+GEFLV++ F++S A++ Sbjct: 360 RHTRQISDFGGLAKQMPVFATMFMIVTFSSIGLPGTNGFVGEFLVLLGSFESSLRWYAII 419 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+LSA+Y LW++++V+FG K K Q LKDL+ RE ++ P+ L F G+YP PI Sbjct: 420 ATSGVILSAVYMLWMFQRVMFGELKNPKNQTLKDLNAREVAIMLPLLFLIFFLGVYPRPI 479 Query: 473 RDTFSVPLSSIIENYTLK 490 D+ + + +I + ++ Sbjct: 480 IDSMAPSIDKLIAHTKVQ 497 >gi|328953781|ref|YP_004371115.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfobacca acetoxidans DSM 11109] gi|328454105|gb|AEB09934.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfobacca acetoxidans DSM 11109] Length = 512 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 226/484 (46%), Positives = 338/484 (69%), Gaps = 15/484 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFF---GVALGISTINFIFSLFVWSVFDK 57 MN P LSI+ LP +GV +I+ R + + G A+ + + FI SL +W FD Sbjct: 1 MNFPILSILILLPMVGVALIMM-----LNRENQWLIKGTAMAFALLEFIISLPLWFGFDG 55 Query: 58 GRSSFQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 G ++ Q +E Y W Y SY++G+DGIS+LLV+LTTF+TP C+L+ W+ IQ +E+MI Sbjct: 56 GSAAMQFVERYSWFPAYGISYYIGIDGISLLLVLLTTFITPICVLACWEDIQSKVKEFMI 115 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGS 175 L L++ +IG F+SLD+ LFYIF+E LIPM+++IGVWG + RIYAA KFF++T GS Sbjct: 116 CLLFLQTGMIGVFVSLDLFLFYIFWEIMLIPMYLLIGVWGNPARRIYAAVKFFIFTMVGS 175 Query: 176 IFMLFAIVVMC-WEKKTSSI--IDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 + ML AI+V+ + K + + DL M + PF +Q+WM++AF +FAIK+PMFP HT Sbjct: 176 LLMLVAILVLYFYNYKVTGVYTFDLLKMYGLQIPFMMQFWMFLAFGLAFAIKVPMFPVHT 235 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH +APT GSV LA ++LKMG YG +RF +P+FP A+ YF P+ L++I I+Y + Sbjct: 236 WLPDAHTEAPTVGSVILAAVLLKMGTYGFLRFNMPMFPDAAWYFVPLFSILAVIGIVYGA 295 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 LVS+VQ D+K+L+A+SS++H+G+V +G+F+ +GV+G + QM++HGL + ALF VG++ Sbjct: 296 LVSLVQVDLKRLVAFSSVSHLGFVMLGLFTYTMAGVQGGIIQMINHGLSTGALFLIVGMV 355 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R HTR I +GGL MP YA + MV T++++GLPG +GF+GE+L+++ F+ + A Sbjct: 356 YERRHTRMIADFGGLSKVMPVYATIFMVVTLSSIGLPGLNGFVGEYLILLGAFKTNKVFA 415 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 + A+ GV+ +A Y LW++++V+FG EK + LKDLS+RE ++ PI V V+ G+YP Sbjct: 416 IFAASGVIFAAAYMLWMFQRVMFGTITNEKNRNLKDLSMREVVVLLPILVFIVWIGVYPN 475 Query: 471 PIRD 474 D Sbjct: 476 TFLD 479 >gi|167585985|ref|ZP_02378373.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ubonensis Bu] Length = 496 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 229/485 (47%), Positives = 332/485 (68%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS +LP + G+ V+ + G + VAL S + ++ + + FD ++ Sbjct: 5 PILSTAIWLPIVFGLLVLAVGNDKNPGPARW--VALIGSLLGLAVTVPLITDFDSSTAAL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E WI+ F +YHLGVDGIS+ VVLT +T +++ W+ I E+ +Y+ AFL+L Sbjct: 63 QFVEQSTWIERFNITYHLGVDGISMWFVVLTALITVIVVIAGWEVITEHVSQYLAAFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 +++G F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGIMVGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + E + + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LIYLYTETHSFDLTT-WQNAKIAMTPQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDRLH+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRLHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+F ++L A Sbjct: 362 YGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAFTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V +L D++ RE M+ +A T+ G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAVANDHVAKLTDINRREFVMLAVLAAFTMLMGLYPKPFTDVMHVSVE 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLSH 486 >gi|330817780|ref|YP_004361485.1| NADH dehydrogenase subunit M [Burkholderia gladioli BSR3] gi|327370173|gb|AEA61529.1| NADH dehydrogenase subunit M [Burkholderia gladioli BSR3] Length = 497 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 238/488 (48%), Positives = 331/488 (67%), Gaps = 11/488 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGRSS 61 P LS +LP + +IL +G R+ VAL S + F ++ + + FD ++ Sbjct: 5 PILSTAIWLPIVFGLLIL---AVGTDRKPGVARWVALIGSLLGFAVTIPLITGFDPSTAA 61 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q E WID F SYHLGVDGIS+ VVLT +T +++ W+ I EN +Y+ +FL+ Sbjct: 62 LQFEENAIWIDRFNVSYHLGVDGISMWFVVLTALITVIVVVAGWEVITENVSQYLASFLM 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ ML Sbjct: 122 LSGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLMLI 181 Query: 181 AIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A++ + E T DL A +K + Q ++ AFF +FA+K+PM+P HTWLP+AHV+ Sbjct: 182 ALIYLYRETHT---FDLAAWQGAKLAMTPQLLLFGAFFLAFAVKVPMWPVHTWLPDAHVE 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV LA IMLK+G YG +RF LP+ P A+ Y APV+ LSLIA+IY LV+MVQTD Sbjct: 239 APTGGSVVLAAIMLKLGAYGFLRFSLPVTPDAAHYLAPVVIVLSLIAVIYIGLVAMVQTD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSSIAHMG+VT+G F + G+EGA+ QM+SHG VS A+F C+GV+YDRLHTR+ Sbjct: 299 MKKLVAYSSIAHMGFVTLGFFIFSQLGIEGAIVQMISHGFVSGAMFLCIGVLYDRLHTRN 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+V+ MP++A ++F MAN GLPGTSGF+GEF+VI++ + + +A A ++ Sbjct: 359 IAEYGGVVNVMPKFATFALLFAMANCGLPGTSGFVGEFMVILASVKFNFWIAFGAGLTLI 418 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A Y+LW+Y++V FG EKV LKD+ RE M+ +A T+ G+YP P D V Sbjct: 419 LGAGYTLWMYKRVYFGKVVNEKVTTLKDIGAREFSMLAVLAAFTLLMGLYPKPFTDVMHV 478 Query: 479 PLSSIIEN 486 + +++ + Sbjct: 479 SVENLLSH 486 >gi|262186696|ref|YP_003275955.1| NADH dehydrogenase subunit 4 [Pleurozia purpurea] gi|237780693|gb|ACR19339.1| NADH dehydrogenase subunit 4 [Pleurozia purpurea] Length = 495 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 227/454 (50%), Positives = 316/454 (69%), Gaps = 3/454 (0%) Query: 35 GVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTT 93 G+ + S I F++SLF W F+ + FQ +E W+ Y ++++G+DGIS+ V+LTT Sbjct: 39 GITIWTSLITFLYSLFFWIRFENDTAKFQFVETIRWLPYPNINFYIGIDGISLFFVILTT 98 Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 FLTP CIL + S++ +EYMIAF V ES I F SLD+L+FY+F E+ LIPMF+IIG Sbjct: 99 FLTPICILVGFYSVKSYKKEYMIAFFVCESFPIAVFCSLDLLIFYVFLESVLIPMFIIIG 158 Query: 154 VWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMW 212 VWG +R I AAY+FFLYT GS+FML AI+ + ++ T+ + + ++F Q +W Sbjct: 159 VWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTD-LQILLTTEFSERRQILLW 217 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 IAFF SF++K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +P+FP A+ Sbjct: 218 IAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATL 277 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 YF P I+ LS+IAIIY SL ++ Q D+KK+IAYSS+AHM +VTIG+FS G+EG++ Sbjct: 278 YFTPFIYVLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILL 337 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 MLSHGLVSSALF CVG +YDR TR + YGGLV MP ++ + + FT+ANM LPGTS F Sbjct: 338 MLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFSTIFLFFTLANMSLPGTSSF 397 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 IGEFL+++ FQ ++ VA LA+ G++L A YSLWLY +VVFG K + + DL+ RE Sbjct: 398 IGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKPNFILKFSDLNRREV 457 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P ++ G+YP + +S+++++ Sbjct: 458 LIFLPFIAGVIWMGVYPEVFLECMHTSVSNLVQH 491 >gi|239946835|ref|ZP_04698588.1| NADH-quinone oxidoreductase subunit M [Rickettsia endosymbiont of Ixodes scapularis] gi|239921111|gb|EER21135.1| NADH-quinone oxidoreductase subunit M [Rickettsia endosymbiont of Ixodes scapularis] Length = 493 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 232/495 (46%), Positives = 340/495 (68%), Gaps = 11/495 (2%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDK 57 + LP +SI FLP + V +++LF S + + VA+ S + FI ++++ FD Sbjct: 2 LELPIISISIFLPLISVLYILLFISQSKKADKPIYVMYVAVLSSVLTFISTIYILIEFDS 61 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++Q +E Y W+D +H+GVDGISI V LT+FLT CI+ S ++++ +EY++ Sbjct: 62 SNPAYQFVERYAWLDKIGLEFHVGVDGISIFFVALTSFLTLICIIGSLFTVKKYIKEYLV 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL++ES IGAF S+++LLFY+FFEA L+PM++IIG+WGG RIYAA KFFLYTFFGS+ Sbjct: 122 CFLLMESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGIWGGENRIYAALKFFLYTFFGSV 181 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTWL 232 F L +++ + + DL +S+ ++I Q +W A F +FA+KIPM PFHTWL Sbjct: 182 FFLLSLIYIYSNIHS---FDLTYISELTYNIPLFAQQILWWAIFIAFAVKIPMIPFHTWL 238 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHVQAPT+GSV LAGI+LK+GGYG +R LLPLFP SQ FA + +LS+I IIYASLV Sbjct: 239 PDAHVQAPTSGSVILAGILLKLGGYGFLRVLLPLFPSVSQEFAIYVIYLSVIIIIYASLV 298 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q D+KK+IAYSSIAHMGYVTIGIFS ++GV GA+FQMLSHG++SS LF VG +Y+ Sbjct: 299 AFAQKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLYE 358 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 RLHT++I YGG+ MP A M+ + ++GLPGTSGFIGEFL ++ +++ + + Sbjct: 359 RLHTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVIATFI 418 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ G++L A+Y L LY++V+ G +++ +DL E + P+ +L ++FG+ P I Sbjct: 419 AALGIILGAVYMLKLYKEVMLGEIINKEIMHFRDLYKYEIISITPLILLIIYFGLMPSSI 478 Query: 473 RDTFSVPLSSIIENY 487 + F + + +++ + Sbjct: 479 LNVFRLSVENLLVKF 493 >gi|67459650|ref|YP_247274.1| NADH dehydrogenase subunit M [Rickettsia felis URRWXCal2] gi|75535954|sp|Q4UK26|NUOM_RICFE RecName: Full=NADH-quinone oxidoreductase subunit M; AltName: Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1 subunit M gi|67005183|gb|AAY62109.1| NADH dehydrogenase I chain M [Rickettsia felis URRWXCal2] Length = 493 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 231/492 (46%), Positives = 338/492 (68%), Gaps = 5/492 (1%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDK 57 + LP +SI FLP + V +++LF S ++ + VA+ S + FI ++++ FD Sbjct: 2 LELPIISISIFLPLISVLYILLFISQSKKADKAIYVMYVAVLSSVLTFISTIYILIEFDS 61 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++Q IE Y W+D +H+GVDGISI V LT+FLT CI+ S ++++ +EY++ Sbjct: 62 SNPAYQFIERYAWLDKIGLEFHVGVDGISIFFVALTSFLTLICIIGSLFTVKKYIKEYLV 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL++ES IGAF S+++LLFY+FFEA L+PM++IIGVWGG RIYAA KFFLYTFFGS+ Sbjct: 122 CFLLMESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGENRIYAALKFFLYTFFGSV 181 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F L +++ + + + + ++ P Q +W A F +FA+KIP+ PFHTWLP+A Sbjct: 182 FFLLSLIYIYSKIHNFDLTYIPELTGNIPLFTQQILWWAIFIAFAVKIPIIPFHTWLPDA 241 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAPT+GSV LAGI+LK GGYG +R LLPLF SQ FA + +LS+IAIIYASLV++ Sbjct: 242 HVQAPTSGSVILAGILLKFGGYGFLRVLLPLFSSVSQEFAIYVIYLSVIAIIYASLVALA 301 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KK+IAYSSIAHMGYVTIGIFS ++GV GA+FQMLSHG++SS LF VG +Y+RLH Sbjct: 302 QKDMKKMIAYSSIAHMGYVTIGIFSFTEAGVSGAIFQMLSHGVISSCLFLIVGTLYERLH 361 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 T++I YGG+ MP A M+ + ++GLPGTSGFIGEFL ++ +++ + +A+ Sbjct: 362 TKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVIATFIAAL 421 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++L A+Y L LY++V+ G +++ +DL E + P+ +L ++FG+ P I + Sbjct: 422 GIILGAVYMLKLYKEVMLGEITNKEIMHFRDLYKYEIISIAPLILLIIYFGLMPSSILNV 481 Query: 476 FSVPLSSIIENY 487 F + + S++ + Sbjct: 482 FRLSVESLLVKF 493 >gi|289207905|ref|YP_003459971.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thioalkalivibrio sp. K90mix] gi|288943536|gb|ADC71235.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thioalkalivibrio sp. K90mix] Length = 504 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 228/498 (45%), Positives = 337/498 (67%), Gaps = 16/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P LS++ +LP LG F++L + G+A+ ++T F+ SL +W F++G + Sbjct: 4 DWPILSLLIWLPILGGFLVLAAGRDAPHVARRLGLAVAVAT--FVASLPLWFAFERGTAE 61 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q E WI F +YHLGVDGIS+ L++LTT +T I+++W+S+++ YM A LV Sbjct: 62 MQFQELASWIPAFNVNYHLGVDGISMPLILLTTLITVIVIIAAWESVKDRIAYYMSAMLV 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +E ++IG F ++D +LFY+FFEA LIPMF++IG+WGG R+YA KFFLYTF GS+FML Sbjct: 122 MEGLMIGMFAAMDAVLFYVFFEAMLIPMFLVIGIWGGPRRVYATIKFFLYTFLGSVFMLV 181 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ M + + I D +A+ + + Q +++AFF +FA+KIPMFP HTWLP+AHV+AP Sbjct: 182 ALIWMYIQSGSFLIQDFHAL-QIGMTAQILIFLAFFMAFAVKIPMFPVHTWLPDAHVEAP 240 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LA IMLK+GGYG +RF LP+ P AS ++ LSLIAI+Y LV+++Q+D+K Sbjct: 241 TGGSVILAAIMLKIGGYGFLRFSLPITPDASAVLDTLMIVLSLIAIVYIGLVALIQSDMK 300 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KLIAYSSIAHMG+VT+G F G G+ G M QM+SHG +S+A+F VG Sbjct: 301 KLIAYSSIAHMGFVTLGFFLAFYIYRNTGDWEGASLGIAGGMVQMISHGFISAAMFLAVG 360 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDRLH+R I YGG+V+ MP +A ++F MAN GLPGTSGF+GEF+VI++ F+ Sbjct: 361 VLYDRLHSRQISDYGGVVNTMPWFAAFFVLFAMANTGLPGTSGFVGEFMVILAAFKADFW 420 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 +A LA+ ++L+A Y+LWL ++V+FG + V L D++ RE ++ +A T+ G++ Sbjct: 421 IAFLAATTLILAAGYTLWLVKRVIFGAVANDNVAGLSDMNRREFFLMGVLAFFTLLLGVW 480 Query: 469 PVPIRDTFSVPLSSIIEN 486 P P+ D + + ++ + Sbjct: 481 PAPLLDVMNATIDHLVAH 498 >gi|21243420|ref|NP_643002.1| NADH dehydrogenase subunit M [Xanthomonas axonopodis pv. citri str. 306] gi|21108972|gb|AAM37538.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas axonopodis pv. citri str. 306] Length = 500 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 234/486 (48%), Positives = 323/486 (66%), Gaps = 19/486 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P LSI+ +LP +G +IL R + +L ++ F SL + +D + Sbjct: 3 NWPLLSILIWLPIIGGALILALRNAETARWA----SLAVAVATFALSLPLLG-YDTANDA 57 Query: 62 FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q IE + WI Y Y+LGVDGI++ L+VLTT +T ++ +W+SI + +Y+ AFL+ Sbjct: 58 MQFIELHAWIPAYNIGYNLGVDGIAVALIVLTTLVTVLALMGAWRSIDKRVNQYVAAFLI 117 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + +G F + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML Sbjct: 118 LEGVTVGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLV 177 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 +V + + + + DLYA+ + Q W++ AF +FA+K+PMFP HTWLP+AHV+AP Sbjct: 178 GLVYLYLKGGSFQLADLYAL-QLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAP 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I LK+GGYG +RF LP+ P AS FA ++ LSLIA+IY LV++VQ D+K Sbjct: 237 TAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMK 296 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KL+AYSSIAHMG+VT+G F + G++GAM QM+SHG VS A+F C+G Sbjct: 297 KLVAYSSIAHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIG 356 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDR+HTR I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ Sbjct: 357 VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPL 416 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 VA A+ +V++A Y+LWLY++V FG V +LKD++ RE ++ A + G+Y Sbjct: 417 VAFAAATTLVITAAYTLWLYKRVFFGEVANAHVAELKDINGREAFVLGVFAAGVLALGLY 476 Query: 469 PVPIRD 474 P P+ D Sbjct: 477 PKPLTD 482 >gi|58582846|ref|YP_201862.1| NADH dehydrogenase subunit M [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624712|ref|YP_452084.1| NADH dehydrogenase subunit M [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58427440|gb|AAW76477.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368652|dbj|BAE69810.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 500 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 234/486 (48%), Positives = 322/486 (66%), Gaps = 19/486 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P LSI+ +LP +G +IL R + +L ++ F SL + +D + Sbjct: 3 NWPLLSILIWLPIIGGALILALRNAETARWA----SLAVAVATFALSLPLLG-YDTANDA 57 Query: 62 FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q IE + WI Y Y+LGVDGI++ L+VLTT +T ++ +W+SI + +Y+ AFL+ Sbjct: 58 MQFIELHAWIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLI 117 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + +G F + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML Sbjct: 118 LEGVTVGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLV 177 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 +V + + + + DLYA+ + Q W++ AF +FA+K+PMFP HTWLP+AHV+AP Sbjct: 178 GLVYLYLKGGSFQLADLYAL-QLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAP 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I LK+GGYG +RF LP+ P AS FA ++ LSLIA+IY LV++VQ D+K Sbjct: 237 TAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVIALSLIAVIYVGLVALVQDDMK 296 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KL+AYSSIAHMG+VT+G F + G++GAM QM+SHG VS A+F C+G Sbjct: 297 KLVAYSSIAHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIG 356 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDR+HTR I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ Sbjct: 357 VLYDRMHTRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILASFQKHPL 416 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 VA A +V++A Y+LWLY++V FG V +LKD++ RE ++ A + G+Y Sbjct: 417 VAFAAGTTLVITAAYTLWLYKRVFFGEVANAHVAELKDINGREAFVLGVFAAGVLAMGLY 476 Query: 469 PVPIRD 474 P P+ D Sbjct: 477 PKPLTD 482 >gi|134296421|ref|YP_001120156.1| NADH dehydrogenase subunit M [Burkholderia vietnamiensis G4] gi|134139578|gb|ABO55321.1| NADH dehydrogenase subunit M [Burkholderia vietnamiensis G4] Length = 496 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 230/485 (47%), Positives = 331/485 (68%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS +LP + G+ V+ + G + +AL S + +L + + FD ++ Sbjct: 5 PILSTAIWLPIVFGLLVLAVGNDKNPGAARW--LALIGSLLGLAVTLPLITGFDSSTAAL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E WI+ F SYHLGVDGIS+ VVLT +T ++++W+ I EN +Y+ AFL+L Sbjct: 63 QFVEQSTWIERFNISYHLGVDGISMWFVVLTALITVIVVIAAWEVITENVAQYLAAFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + + S + + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LIYL-YTQTHSFDLATWQNAKIAMTPQIMLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F +GV+YDRLH+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLSIGVLYDRLHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A M+F+MAN GLPGTSGF+GEF+VI++ Q + + A+F ++L A Sbjct: 362 YGGVVNVMPKFAAFAMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIGFGAAFTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V +L D+ RE M+ +A T+ G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAVANDHVAKLTDIGRREFVMLAVLAAFTLLMGLYPKPFTDVMHVSVE 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLSH 486 >gi|209518503|ref|ZP_03267324.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. H160] gi|209501048|gb|EEA01083.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. H160] Length = 496 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 228/485 (47%), Positives = 333/485 (68%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LSI +LP + G+ V+ + + ++L S ++F+ +L + + FD + Sbjct: 5 PILSIAIWLPIVFGLLVLAIGNDENPAPARW--ISLIGSVLSFLVTLPLITSFDSSTADL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q E WID F +YHLGVDGIS+ VVLT +T ++++W+ I +N +Y+ AFL+L Sbjct: 63 QFEEQASWIDRFHITYHLGVDGISMWFVVLTALITVIVVIAAWEVITKNVGQYLAAFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 +++G F + D LLFY+FFEA+LIPM++IIGVWGG+ R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGVMVGVFSAADGLLFYVFFEATLIPMYIIIGVWGGANRVYAAFKFFLYTLAGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + E T + + ++ + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LIYLYNETGTFDLAT-WQHAQIAMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY V+MVQ D+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGFVAMVQADMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + G EGA+ QM+SHG VS A+F C+GV+YDR+H+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGAEGAIVQMISHGFVSGAMFLCIGVLYDRMHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A +M+F MAN GLPGTSGF+GEF+VI++ Q + +A A+ ++L A Sbjct: 362 YGGVVNVMPKFAAFVMLFAMANCGLPGTSGFVGEFMVILASVQYNFWIASGAAVTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V+ L D+ RE M+ +A LT+F G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAVANDHVKSLLDIDRREFFMLAVLAALTLFMGLYPKPFTDVMHVSVE 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLSH 486 >gi|194366592|ref|YP_002029202.1| NADH dehydrogenase subunit M [Stenotrophomonas maltophilia R551-3] gi|194349396|gb|ACF52519.1| proton-translocating NADH-quinone oxidoreductase, chain M [Stenotrophomonas maltophilia R551-3] Length = 502 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 231/488 (47%), Positives = 330/488 (67%), Gaps = 22/488 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P LS++ +LP +G +IL R + +LG++ + F+ SL + S ++ G Sbjct: 3 NWPLLSVLIWLPIIGGALILAIRDAQTARWA----SLGVAVLTFVASLSLLSGYNAGVDG 58 Query: 62 FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E + WI Y Y+LGVDGI++ L++LTT ++ ++ +W +I + +Y+ AFL+ Sbjct: 59 MQFVETHAWIPAYKIGYNLGVDGIAVALILLTTLVSVLALIGAWSAIDKRVNQYVAAFLI 118 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + +G F + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML Sbjct: 119 LEGVTVGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAALKFFLYTFLGSVLMLV 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A++ + + + + DLYA+ P S Q W++ AF +FA+K+PMFP HTWLP+AHV+ Sbjct: 179 ALIYLYMKGGSFQLADLYAL---PLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVE 235 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LA I LK+GGYG +RF LP+ P ASQ +A ++ LSLIA+IY LV++VQ D Sbjct: 236 APTAGSVILAAIALKIGGYGFLRFNLPIVPDASQEWAWLVIALSLIAVIYVGLVALVQDD 295 Query: 299 IKKLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFC 346 +KKLIAYSSIAHMG+VT+G F + G++GAM QM+SHG VS A+F Sbjct: 296 MKKLIAYSSIAHMGFVTLGTFIALWLVREAGNADAARLGLQGAMVQMISHGFVSGAMFSS 355 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 VGV+YDR+H+R I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ + Sbjct: 356 VGVLYDRMHSRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILAAFQRN 415 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 +A+ A+ +++ A Y+LWLY+++ FG V +LKD++ RE ++ A+ + G Sbjct: 416 PWIALGAATTLIIGAAYTLWLYKRIFFGEVANSHVAELKDINGREWLVLGVFAIGVLALG 475 Query: 467 IYPVPIRD 474 IYP P+ D Sbjct: 476 IYPKPLTD 483 >gi|314908396|gb|ADT62145.1| NADH dehydrogenase subunit 4 [Isoetes engelmannii] Length = 495 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 229/458 (50%), Positives = 314/458 (68%), Gaps = 3/458 (0%) Query: 31 RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLV 89 R + L S I F++SLF W FD + FQ +E W+ D ++ +G+DGIS+ V Sbjct: 35 RLIRSIGLCTSLITFLYSLFFWVRFDNSTAKFQFVETIRWLPDSNINFSIGIDGISLFFV 94 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 VLTTFL P CIL W SI+ +EYMIAFL+ ES++I F LD+LLFY+FFE+ LIPMF Sbjct: 95 VLTTFLIPICILVGWSSIESYEKEYMIAFLICESIMIAVFCMLDLLLFYVFFESVLIPMF 154 Query: 150 VIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ 208 +IIG+WG +R I AAY+FFLYT GS+FML AI+++ T+ + + + F Q Sbjct: 155 IIIGIWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLIFSGTGTTDV-QILLTTGFSERRQ 213 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 +WIAFF F++K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +P+ P Sbjct: 214 ILLWIAFFAFFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFNIPMCP 273 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 +A+ YF P+I+ LS+IAIIY SL ++ Q D+KK IAYSS+AHM + TIG+FS G+EG Sbjct: 274 VATLYFTPLIYTLSVIAIIYTSLTTIRQIDLKKNIAYSSVAHMNFGTIGMFSLNVQGIEG 333 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 ++ MLSHGLVSSALF CVG +YDR TR + YGGLV MP ++ + + F +ANM LPG Sbjct: 334 SILLMLSHGLVSSALFLCVGALYDRHRTRLVKYYGGLVSTMPIFSTIFLFFILANMSLPG 393 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 TS FIGEFLV++ F+ ++ VAVLA+ G++L A YSLWLY +VVFG K +Q+ DL+ Sbjct: 394 TSSFIGEFLVLVGAFERNSLVAVLAALGMILGAAYSLWLYNRVVFGNFKPNSLQKFSDLN 453 Query: 449 LRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 RE + P V ++ G+YP + + +++++ Sbjct: 454 RREVLIFLPFIVGVIWMGVYPEVFLECMHTSVGNLVQH 491 >gi|21231948|ref|NP_637865.1| NADH dehydrogenase subunit M [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767925|ref|YP_242687.1| NADH dehydrogenase subunit M [Xanthomonas campestris pv. campestris str. 8004] gi|188991041|ref|YP_001903051.1| NADH dehydrogenase subunit M [Xanthomonas campestris pv. campestris str. B100] gi|21113678|gb|AAM41789.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573257|gb|AAY48667.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas campestris pv. campestris str. 8004] gi|167732801|emb|CAP50995.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas campestris pv. campestris] Length = 500 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 231/486 (47%), Positives = 324/486 (66%), Gaps = 19/486 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P LS++ +LP +G +IL R + +L ++ F+ SL + +D + Sbjct: 3 NWPLLSLLIWLPIIGGALILALRNAETARWA----SLAVAVATFVLSLPLLG-YDTANDA 57 Query: 62 FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q IE + WI Y Y+LGVDGI++ L+VLTT +T ++ +W+SI + +Y+ AFL+ Sbjct: 58 MQFIEQHAWIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLI 117 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + +G F + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML Sbjct: 118 LEGVTVGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLV 177 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 ++ + + + + DLYA+ + Q W++ AF +FA+K+PMFP HTWLP+AHV+AP Sbjct: 178 GLIYLYLKGGSFQLADLYAL-QLTAKEQTWIFFAFMIAFAVKVPMFPVHTWLPDAHVEAP 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I LK+GGYG +RF LP+ P AS +A ++ LSLIA+IY LV++VQ D+K Sbjct: 237 TAGSVILAAIALKIGGYGFLRFNLPILPDASNQWAWLVIALSLIAVIYVGLVALVQDDMK 296 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KL+AYSSIAHMG+VT+G F + G++GAM QM+SHG VS A+F C+G Sbjct: 297 KLVAYSSIAHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIG 356 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDR+HTR I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ Sbjct: 357 VLYDRMHTRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILASFQKHPL 416 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 VA A+ +V++A Y+LWLY++V FG V +LKD++ RE ++ A + G+Y Sbjct: 417 VAFAAATTLVITAAYTLWLYKRVFFGEVANAHVAELKDINGREAFVLGVFAAGVLALGLY 476 Query: 469 PVPIRD 474 P P+ D Sbjct: 477 PKPLTD 482 >gi|295676049|ref|YP_003604573.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. CCGE1002] gi|295435892|gb|ADG15062.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. CCGE1002] Length = 496 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 228/485 (47%), Positives = 333/485 (68%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LSI +LP F G+ V+ + + ++L S ++F+ +L + + FD + Sbjct: 5 PILSIAIWLPIFFGLLVLAIGNDENPAPARW--ISLIGSVLSFLVTLPLITSFDSSTADL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E +WI F YHLGVDGIS+ V LT +T +++ W+ I +N +Y+ AFL+L Sbjct: 63 QFVEQANWIQRFHIMYHLGVDGISMWFVSLTALITVIVVIAGWEVITKNVGQYLAAFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 +++G F + D +LFY+FFEA+LIPM++IIGVWGG+ R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGIMVGVFSAADGMLFYVFFEATLIPMYIIIGVWGGANRVYAAFKFFLYTLAGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + + S I + ++ + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LIYL-YNETGSFDIATWQHAQIAMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APVI LSLIA+IY LV+MVQ D+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVIITLSLIAVIYIGLVAMVQADMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + G EGA+ QM+SHG VS A+F C+GV+YDR+H+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGAEGAIVQMISHGFVSGAMFLCIGVLYDRMHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A +M+F MAN GLPGTSGF+GEF+VI++ Q + +A A+ ++L A Sbjct: 362 YGGVVNVMPKFAAFVMLFAMANCGLPGTSGFVGEFMVILASVQYNFWIASGAAVTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V+ L D+ RE M+ +A LT+F G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAVANDHVKSLVDIDRREFFMLAVLAALTLFMGLYPKPFTDVMHVSVD 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLSH 486 >gi|294788055|ref|ZP_06753299.1| NADH dehydrogenase (ubiquinone), M subunit [Simonsiella muelleri ATCC 29453] gi|294484348|gb|EFG32031.1| NADH dehydrogenase (ubiquinone), M subunit [Simonsiella muelleri ATCC 29453] Length = 505 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 223/480 (46%), Positives = 328/480 (68%), Gaps = 18/480 (3%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGRSSF 62 LS+ +LP L ++L + G R+ L + + F+ +L +++ FD+ + Sbjct: 6 LLSLAIWLPILSGVLVLAT---GSDSRAPLARILALIGAAAGFLVTLPLFTQFDRSNGGY 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q E + WI +Y LGVDGIS+L ++L F+T +LS+W+ IQ +YM AFL++ Sbjct: 63 QFTELHSWIPTLNLNYALGVDGISVLFIILNAFITLMVVLSAWEVIQNRPAQYMAAFLIM 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ++ GAF + D +LFY+FFE LIP+++IIG+WGG R+YAA K FLYT GS+ ML A Sbjct: 123 SGLINGAFAAQDAILFYVFFEGMLIPLYLIIGMWGGPRRVYAAMKLFLYTLLGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + ++ + I DL A+ + P +Q ++IAFF SFA+K+PMFP HTWLP+AHV+APT Sbjct: 183 LIYLGYQANSFMISDLQAIKQIPLGVQQLLFIAFFLSFAVKVPMFPVHTWLPDAHVEAPT 242 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GS+ LA I LK+G YG +RF+LP+ P AS+YFAPV+ LSLIA+IY +V++VQTD+KK Sbjct: 243 GGSMVLAAITLKIGAYGFLRFVLPIVPDASRYFAPVVIVLSLIAVIYVGMVALVQTDMKK 302 Query: 302 LIAYSSIAHMGYVTIGI--FSGMKS----------GVEGAMFQMLSHGLVSSALFFCVGV 349 L+AYSSI+HMG+VT+GI FSGM S G++GA+ QM+SHG VS+A+F C+GV Sbjct: 303 LVAYSSISHMGFVTLGIFLFSGMFSGSLLGELNDWGLKGAIVQMISHGFVSAAMFMCIGV 362 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 +YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+VIM + + Sbjct: 363 MYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMVIMGAVHVNLWI 422 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 LA+ ++L A Y+LW+Y++ +FG V ++KD++ RE ++ +A+ + G+YP Sbjct: 423 GALAAITLILGASYTLWMYKRTIFGEITNPHVAEMKDINKREFAILTILAMAVLGMGLYP 482 >gi|78048397|ref|YP_364572.1| NADH dehydrogenase subunit M [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036827|emb|CAJ24520.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 500 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 234/486 (48%), Positives = 323/486 (66%), Gaps = 19/486 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P LSI+ +LP +G +IL R + +L ++ F SL + +D + Sbjct: 3 NWPLLSILIWLPIIGGALILALRNAETARWA----SLAVAVATFALSLPLLG-YDTANDA 57 Query: 62 FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q IE + WI Y Y+LGVDGI++ L+VLTT +T ++ +W+SI + +Y+ AFL+ Sbjct: 58 MQFIELHTWIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLI 117 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + +G F + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML Sbjct: 118 LEGVTVGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLV 177 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 +V + + + + DLYA+ + Q W++ AF +FA+K+PMFP HTWLP+AHV+AP Sbjct: 178 GLVYLYLKGGSFQLADLYAL-QLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAP 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I LK+GGYG +RF LP+ P AS FA ++ LSLIA+IY LV++VQ D+K Sbjct: 237 TAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMK 296 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KL+AYSSIAHMG+VT+G F + G++GAM QM+SHG VS A+F C+G Sbjct: 297 KLVAYSSIAHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIG 356 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDR+HTR I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ Sbjct: 357 VLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPL 416 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 VA A+ +V++A Y+LWLY++V FG V +LKD++ RE ++ A + G+Y Sbjct: 417 VAFGAATTLVITAAYTLWLYKRVFFGEVANAHVAELKDINGREAFVLGVFAAGVLALGLY 476 Query: 469 PVPIRD 474 P P+ D Sbjct: 477 PKPLTD 482 >gi|39995459|ref|NP_951410.1| NADH dehydrogenase I subunit M [Geobacter sulfurreducens PCA] gi|39982222|gb|AAR33683.1| NADH dehydrogenase I, M subunit [Geobacter sulfurreducens PCA] gi|298504458|gb|ADI83181.1| NADH dehydrogenase I, M subunit [Geobacter sulfurreducens KN400] Length = 522 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 228/493 (46%), Positives = 335/493 (67%), Gaps = 10/493 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P +S++TFLP LGV ++ F +AL +S + F+ S+ + + F + + FQ Sbjct: 5 PLISVMTFLPLLGVVLLFFVPKQSHSVHRM--LALLVSLVTFVVSIPLVTGF-QSNADFQ 61 Query: 64 MIEYYHWI---DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 +E WI + +YH+ +DGIS+ LV+LTTF+ P ILS+W +++E +EYMI L+ Sbjct: 62 FVEKMPWIAAGPFQMNYHVAIDGISLWLVLLTTFIMPIAILSTWTAVEEKVKEYMICLLL 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE ++GAF+SLD+ LFYIF+E LIPM+ IIG+WGG +IYAA KFF+YT GS+ ML Sbjct: 122 LEVGMLGAFVSLDLFLFYIFWEVMLIPMYFIIGIWGGKNKIYAAVKFFIYTMVGSMLMLV 181 Query: 181 AIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A+V + ++ +++ Y ++ P + Q WM++AF +FAIK+PMFP HTWLP+AH + Sbjct: 182 ALVTLYFKAGAGDFNVLRFYEVTLDP-ATQVWMFLAFALAFAIKVPMFPLHTWLPDAHTE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LA ++LKMG YG +RF +PLFP A+ F P+I LS+I IIYA+LV+MVQ D Sbjct: 241 APTAGSVILAAVLLKMGTYGFVRFAMPLFPDATDKFTPLIATLSVIGIIYAALVAMVQED 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSS+AH+GYV +G+F+ G+ G M QML+HG+ + ALF VG IY+R HTR Sbjct: 301 VKKLVAYSSVAHLGYVMLGVFALNLQGLSGGMLQMLNHGVSTGALFLIVGFIYERRHTRL 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-NTVAVLASFGV 417 I +GGL MP +A + M+ T++++GLPGT+GF+GEFLV++ F++ AV+ + GV Sbjct: 361 ITDFGGLAKQMPVFATIFMIVTLSSIGLPGTNGFVGEFLVLLGAFESELRWYAVIGTSGV 420 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +L+A+Y LW++++V+FG K Q L DL+ RE ++ P+ VL G+YP P + S Sbjct: 421 ILAAVYMLWMFQRVMFGELTNPKNQTLCDLNAREVGIMLPLLVLIFVMGVYPTPFIEKMS 480 Query: 478 VPLSSIIENYTLK 490 L +I + K Sbjct: 481 PSLEKLIVHVKTK 493 >gi|157804162|ref|YP_001492711.1| NADH dehydrogenase subunit M [Rickettsia canadensis str. McKiel] gi|157785425|gb|ABV73926.1| NADH dehydrogenase subunit M [Rickettsia canadensis str. McKiel] Length = 493 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 227/492 (46%), Positives = 340/492 (69%), Gaps = 5/492 (1%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDK 57 + LP +SI FLP + V +++LF S + + + + + S + FI + ++ FD Sbjct: 2 LELPIISISIFLPLISVLYILLFISQSKKTDKPIYVMYVVVLSSVLTFISTTYILVEFDS 61 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++Q +E+Y W+D +H+GVDGISI VVLT+FLT CI+ S ++++ +EY++ Sbjct: 62 SNPAYQFVEHYTWLDKIGLEFHVGVDGISIFFVVLTSFLTLICIIGSLFTVKKYIKEYLV 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL++ES IGAF S+++LLFY+FFEA L+PM++IIGVWGG RIYAA+KFFLYTFFGS+ Sbjct: 122 CFLLMESFCIGAFTSINLLLFYLFFEAILVPMYIIIGVWGGENRIYAAFKFFLYTFFGSV 181 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F L +++ + + + + + ++ P Q +W F +FA+KIPM PFHTWLP+A Sbjct: 182 FFLLSLIYIYSKIHSFDLTYIPELTGNIPLFAQKVLWWTIFIAFAVKIPMIPFHTWLPDA 241 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAPT+GSV LAGI+LK+GGYG +R LL L P SQ FA + +LS+IAIIYASLV++ Sbjct: 242 HVQAPTSGSVILAGILLKLGGYGFLRVLLTLLPTTSQAFAIYVIYLSVIAIIYASLVALA 301 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KK+IAYSSIAHMGYVTIG+FS ++G+ GA+FQMLSHG++SS LF VG +Y+RLH Sbjct: 302 QKDMKKMIAYSSIAHMGYVTIGMFSFTEAGISGAIFQMLSHGVISSCLFLIVGTLYERLH 361 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 T++I YGG+V+ MP A M+ +++GLPGTSGFIGEFL ++ +++ + +A+ Sbjct: 362 TKEIAKYGGVVNKMPVLATFFMMAIFSSIGLPGTSGFIGEFLSLLGIYKVNIAATFVAAL 421 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++L A Y L LY++V+ G +++ +DL E + P+ +L ++FGI P I + Sbjct: 422 GIILGAGYMLKLYKEVMLGEITNKEIMHFRDLYKYEIISIAPLILLIIYFGIMPNSILNI 481 Query: 476 FSVPLSSIIENY 487 F + + +++ + Sbjct: 482 FRLSIENLLVRF 493 >gi|149927553|ref|ZP_01915807.1| NADH dehydrogenase subunit M [Limnobacter sp. MED105] gi|149823826|gb|EDM83052.1| NADH dehydrogenase subunit M [Limnobacter sp. MED105] Length = 493 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 220/489 (44%), Positives = 333/489 (68%), Gaps = 9/489 (1%) Query: 2 NLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 N+P+LS+ +LP GV ++ + G G +L + I+F+ +L ++ FD + Sbjct: 4 NIPYLSLAIWLPIAFGVLIMALGNDKNAGAVR--GASLIAALISFVVTLPLYFGFDTSTA 61 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q +E WI+ F SY LGVDG+S+ V+LT +T F ++++W+ I E +YM AFL Sbjct: 62 QLQFVEKLPWIEAFGASYGLGVDGLSVWFVILTALITVFVVVAAWEVITEKVAQYMAAFL 121 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L +++G F + D LLFY+FFEA+LIPM++I+GVWGG RIYAA+KFFLYT GS+ L Sbjct: 122 ILSGLMVGVFTATDGLLFYVFFEATLIPMYIIVGVWGGPNRIYAAFKFFLYTLLGSLLTL 181 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 AI+ + ++ T ++ A K P + Q +++AF +FA+K+PM+P HTWLP+AHV Sbjct: 182 VAIIYLQFQSGT---FEIAAWHKLPLDMTEQILIFLAFLMAFAVKVPMWPVHTWLPDAHV 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APT GSV LA IMLK+G YG +RF +P+ P AS A + LSLIA++Y +V++VQ Sbjct: 239 EAPTGGSVVLAAIMLKLGAYGFLRFSMPIAPDASHELAGFMITLSLIAVVYIGVVALVQK 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KKL+AYSSIAHMG+VT+G F V+GA+ QM+SHG VS A+F C+GV+YDR+H+R Sbjct: 299 DMKKLVAYSSIAHMGFVTLGFFMFQDLAVQGAIIQMISHGFVSGAMFICIGVLYDRVHSR 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I AYGG+V+ MP++A ++F MAN GLP TSGF+GEF+VI+ + + + +LA+ + Sbjct: 359 EIAAYGGVVNTMPKFAAFFLLFAMANAGLPATSGFVGEFMVILGAVKYNFWIGLLAATTL 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 + A YSLW+Y++VVFG + V++L D++ RE M+ +A+L + G+YP P D Sbjct: 419 IFGAAYSLWMYKRVVFGEVANDNVKELTDVNTREFMMLGALAILVMAMGLYPKPFTDVLQ 478 Query: 478 VPLSSIIEN 486 V + +++++ Sbjct: 479 VSVDALLQH 487 >gi|186476752|ref|YP_001858222.1| NADH dehydrogenase subunit M [Burkholderia phymatum STM815] gi|184193211|gb|ACC71176.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia phymatum STM815] Length = 497 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 226/485 (46%), Positives = 341/485 (70%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LSI ++P + G+ V+ S G + +AL S ++FI ++ + + FD ++ Sbjct: 6 PILSIAIWMPIIFGLVVLAIGSDRNPGPARW--IALIGSVLSFIVTIPLITDFDTSTAAL 63 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q E +WI+ F +YHLG+DGI++ VVLT +T ++++W+ I +N +Y+ AFL+L Sbjct: 64 QFEEKANWIERFNITYHLGIDGIAMWFVVLTALITVIVVIAAWEVITKNVAQYLAAFLIL 123 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 +++G F + D +LFY+FFEA+LIPM++IIGVWGG+ R+YAA+KFFLYT GS+ ML Sbjct: 124 SGIMVGVFCAADGMLFYVFFEATLIPMYIIIGVWGGANRVYAAFKFFLYTLMGSLLMLVG 183 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + T + +A +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 184 LLYLYTQTGTFDLAAWHA-AKLSMTPQVLLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPT 242 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA++Y LV+MVQ D+KK Sbjct: 243 GGSVVLAAIMLKLGAYGFLRFSLPIAPDASHFLAPVVITLSLIAVVYIGLVAMVQADMKK 302 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + G EGA+ QM+SHG VS A+F C+GV+YDR+H+R I Sbjct: 303 LVAYSSIAHMGFVTLGFFIFNQLGTEGAIVQMISHGFVSGAMFLCIGVLYDRMHSRQIAD 362 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A ++M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+ ++L A Sbjct: 363 YGGVVNTMPKFAALVMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAFGAAVTLILGA 422 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V+ L D++ RE M+ +AVLT++ GIYP P + V + Sbjct: 423 AYTLWMYKRVYFGAVVNDHVKSLIDINRREFFMLGVLAVLTLYMGIYPKPFTEVMHVSVE 482 Query: 482 SIIEN 486 +++ + Sbjct: 483 NLLSH 487 >gi|114330937|ref|YP_747159.1| NADH dehydrogenase subunit M [Nitrosomonas eutropha C91] gi|114307951|gb|ABI59194.1| NADH dehydrogenase subunit M [Nitrosomonas eutropha C91] Length = 493 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/486 (48%), Positives = 330/486 (67%), Gaps = 7/486 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS++ +LP + G+ V L S ++ VAL S F+ +L ++S FD S Sbjct: 6 PLLSLIIWLPIVSGLIVFLMSDR---NTQAVRWVALAGSVAGFLVTLPLYSGFDTSMGSM 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q IE W + Y+LGVDGIS+ L++L +F TP +++ W+ I+E +YM AFL++ Sbjct: 63 QFIERNVWFERLNVYYYLGVDGISMPLILLNSFTTPLVVIAGWEVIREKVSQYMGAFLIM 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ++ G F SLD +LFY F+EASL+PMF+IIGVWGG RIYAA KFFLYTF GS+ ML A Sbjct: 123 SGVLNGVFASLDAILFYSFWEASLVPMFIIIGVWGGPNRIYAALKFFLYTFLGSLLMLVA 182 Query: 182 IVVMCWEKKTS-SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 ++ + S SI+D Y P + Q ++I F +FA+K+PM+P HTWLP+AHV+AP Sbjct: 183 LIYLYQASGGSFSILD-YHHLPIPMAAQILIFIGFMVAFAVKVPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LA I+LK+GGYG +RF LP+ P AS + ++ LSLIAI+Y +V+++Q D+K Sbjct: 242 TGGSVVLAAILLKLGGYGFLRFSLPITPDASHELSWILIALSLIAIVYIGIVALMQRDMK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS++HMG+VT+G F G+EGAM QM+SHG +S ALF CVGV+YDRLHTR I Sbjct: 302 KLIAYSSVSHMGFVTLGFFLFNPIGIEGAMVQMISHGFISGALFLCVGVLYDRLHTRMIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGG+V+ MP +A + M+F MAN GLPGTSGF+GEF+VIM + + A A+ ++L Sbjct: 362 DYGGVVNKMPVFAALFMLFAMANSGLPGTSGFVGEFMVIMGSMEVNFWYAFFAALTLILG 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A YSLWLY+KVVFG V+ +KD+S RE ++ +AV + GIYP+P+ + V + Sbjct: 422 ASYSLWLYKKVVFGAVANPNVEGMKDISAREFLVLAILAVAVLALGIYPLPLTEVMHVTV 481 Query: 481 SSIIEN 486 +++E+ Sbjct: 482 DNLLEH 487 >gi|197941020|gb|ACH78246.1| NADH dehydrogenase subunit 4 [Arabidopsis thaliana] Length = 495 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/483 (48%), Positives = 324/483 (67%), Gaps = 5/483 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + P LG ++LF R + L S I F++SL +W FD + FQ + Sbjct: 12 LSGLILCPVLGSIILLFIP--NSRIRLIRLIGLCASLITFLYSLVLWIQFDSSTAKFQFV 69 Query: 66 EYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E W+ Y +++LG+DGIS+ V+LTTFL P CIL W ++ +EY+IAFL+ E + Sbjct: 70 ESLRWLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFL 129 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIV 183 +I F LD+LLFY+FFE+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+ Sbjct: 130 MIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAIL 189 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 ++ ++ T+ + + ++F Q ++WIAFF SFA+K+PM P H WLP AHV+APTAG Sbjct: 190 LILFQTGTTDL-QILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAG 248 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI+LK G YG +RF +P+FP A+ F P I+ LS IAIIY SL ++ Q D+KK+I Sbjct: 249 SVILAGILLKFGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKII 308 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM VTIG+FS G+ G++ MLSHGLVSSALF CVGV+YDR TR + YG Sbjct: 309 AYSSVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYG 368 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GLV MP ++ + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A Y Sbjct: 369 GLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAY 428 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLWLY +VV G K + + + DL+ RE + P V V+ G+YP D +S++ Sbjct: 429 SLWLYNRVVSGNLKPDFLHKFSDLNGREVFIFIPFLVGLVWMGVYPKVFLDCMHTSVSNL 488 Query: 484 IEN 486 +++ Sbjct: 489 VQH 491 >gi|148244401|ref|YP_001219095.1| NADH dehydrogenase I chain M [Candidatus Vesicomyosocius okutanii HA] gi|146326228|dbj|BAF61371.1| NADH dehydrogenase I chain M [Candidatus Vesicomyosocius okutanii HA] Length = 501 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 228/486 (46%), Positives = 334/486 (68%), Gaps = 18/486 (3%) Query: 14 FLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID 72 F GV VI ++G GR + V+L +S F+ SL +++ FD Q +E WI Sbjct: 15 FSGVLVI----FIGNGRANIARWVSLILSIFIFVISLSLYTSFDSSTHLMQFVEKSSWIS 70 Query: 73 YF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLS 131 F +YH+GVDGIS+ L++LTTF T I++ W+ + + YM AFL++E ++IG F S Sbjct: 71 QFNINYHIGVDGISVPLIILTTFSTILVIIAGWEVVIKRCSHYMAAFLMMEGLIIGVFSS 130 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT 191 LD +LFY+F+EASLIPM +IIG+WGG R+YA+ KFFLYTF GS+FML +++ M + + Sbjct: 131 LDAILFYVFWEASLIPMLLIIGIWGGVNRVYASIKFFLYTFLGSVFMLLSLIYMYNKGGS 190 Query: 192 SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 SIID++ + K F+ Q +++ AFF +FA+K+PMFP HTWLP+AHVQAPT GSV LA IM Sbjct: 191 FSIIDMHNL-KLSFTEQSYIFWAFFMAFAVKVPMFPMHTWLPDAHVQAPTGGSVILAAIM 249 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LKMGGYG RF LP+ P AS F+ ++ LSLIAI+Y +++VQ DIKKLIAYSSI+HM Sbjct: 250 LKMGGYGFFRFSLPIIPDASLEFSEIMIILSLIAIVYIGFIALVQRDIKKLIAYSSISHM 309 Query: 312 GYVTIGIFS-----------GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 G+VT+GIF+ G G+EGAM QM+SHG +S+A+F VGV+YDRLH+R+I Sbjct: 310 GFVTLGIFTLFLSYKQNIIEGSLLGLEGAMVQMISHGFISAAMFLVVGVLYDRLHSREIS 369 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGG+++ MP++ +++F MAN+GLPGTSGF+GEF+VI+ Q + +L++ +++ Sbjct: 370 TYGGVINTMPKFTGFVILFAMANVGLPGTSGFVGEFMVILGAIQANIWYGILSASTLIIG 429 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LW+ ++V FGV V LKD++ RE ++ +A++ + G+YP P+ + + + Sbjct: 430 AAYTLWMVKRVFFGVITNPAVSMLKDINAREFSILAILAIVVLVIGLYPQPVIELMHISI 489 Query: 481 SSIIEN 486 ++ Sbjct: 490 EHLLHQ 495 >gi|28198183|ref|NP_778497.1| NADH dehydrogenase subunit M [Xylella fastidiosa Temecula1] gi|182680817|ref|YP_001828977.1| NADH dehydrogenase subunit M [Xylella fastidiosa M23] gi|28056253|gb|AAO28146.1| NADH-ubiquinone oxidoreductase NQO13 subunit [Xylella fastidiosa Temecula1] gi|182630927|gb|ACB91703.1| proton-translocating NADH-quinone oxidoreductase, chain M [Xylella fastidiosa M23] gi|307579284|gb|ADN63253.1| NADH dehydrogenase subunit M [Xylella fastidiosa subsp. fastidiosa GB514] Length = 501 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 243/500 (48%), Positives = 332/500 (66%), Gaps = 21/500 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P LS++ +LP +G +I+ R + AL ++ + F FSL + +D + + Sbjct: 3 NWPLLSVLIWLPIIGGLLIMGLRNAHVARWA----ALAVALVTFGFSLHLLGGYDIAKDA 58 Query: 62 FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E + WI Y Y+LGVDGI+I LV+LTT +T ++ SW SIQ+ +Y+ AFL+ Sbjct: 59 LQFVEQHVWIQTYSIGYNLGVDGIAIALVLLTTLVTVLVLIGSWGSIQQRVPQYVAAFLI 118 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + IG F + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML Sbjct: 119 LEGVTIGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLV 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 ++ + + + + DLYAM + Q W++ AF +FA+K+PMFP HTWLP+AHV+AP Sbjct: 179 GLIYLYLKGGSFQLADLYAM-QLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I LK+GGYG +RF LP+ P AS FA V+ LSLIA+IY LV++VQ D+K Sbjct: 238 TAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIALSLIAVIYVGLVALVQEDMK 297 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KLIAYSSIAHMG+VT+GIF + G++GAM QM+SHG VS A+F C+G Sbjct: 298 KLIAYSSIAHMGFVTLGIFIAFTLVRDFGNTDAARLGLQGAMVQMISHGFVSGAMFTCIG 357 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDR+HTR I YGG+V+ MP +A ++F MAN GLPGTSGF+GEF+VI++ FQ Sbjct: 358 VLYDRMHTRRIADYGGVVNVMPWFATFAILFYMANAGLPGTSGFVGEFMVILASFQKHPL 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 VA A +V++A Y+LWLY++V FG V LKD++ RE ++ A+ + G+Y Sbjct: 418 VAFGAGTTLVITAAYTLWLYKRVFFGEVANTHVAALKDINFREASVLVLFAIGVLVLGLY 477 Query: 469 PVPIRDTFSVPLSSIIENYT 488 P P+ D SSI++ T Sbjct: 478 PKPLIDLMD---SSIVKLTT 494 >gi|166712602|ref|ZP_02243809.1| NADH dehydrogenase subunit M [Xanthomonas oryzae pv. oryzicola BLS256] Length = 491 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 229/477 (48%), Positives = 318/477 (66%), Gaps = 19/477 (3%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 +LP +G +IL R + +L ++ F SL + +D + Q IE + W Sbjct: 3 WLPIIGGALILALRNAETARWA----SLAVAVATFALSLPLLG-YDTANDAMQFIELHAW 57 Query: 71 ID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAF 129 I Y Y+LGVDGI++ L+VLTT +T ++ +W+SI + +Y+ AFL+LE + +G F Sbjct: 58 IPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGIF 117 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML +V + + Sbjct: 118 AATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLYLKG 177 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + + DLY++ + Q W++ AF +FA+K+PMFP HTWLP+AHV+APTAGSV LA Sbjct: 178 GSFQLADLYSL-QLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAA 236 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I LK+GGYG +RF LP+ P AS FA ++ LSLIA+IY LV++VQ D+KKL+AYSSIA Sbjct: 237 IALKIGGYGFLRFNLPILPDASHEFAWLVIALSLIAVIYVGLVALVQDDMKKLVAYSSIA 296 Query: 310 HMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 HMG+VT+G F + G++GAM QM+SHG VS A+F C+GV+YDR+HTR Sbjct: 297 HMGFVTLGTFIAFTLLREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHTR 356 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ VA A+ + Sbjct: 357 RIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFAAATTL 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 V++A Y+LWLY++V FG V +LKD++ RE C++ A + G+YP P+ D Sbjct: 417 VITAAYTLWLYKRVFFGEVANAHVAELKDINGREACVLGVFAAGVLALGLYPKPLTD 473 >gi|307730328|ref|YP_003907552.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. CCGE1003] gi|307584863|gb|ADN58261.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. CCGE1003] Length = 496 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 229/485 (47%), Positives = 338/485 (69%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LSI +LP L G+ V+ S G + +AL S I+F+ ++ + + FD + Sbjct: 5 PILSIAIWLPILFGLLVLAIGSDRNPGPARW--IALIGSVISFVVTIPLITGFDSSTADL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E +WI+ F +YHLGVDGIS+ VVLT +T ++++W+ I +N +Y+ +FL+L Sbjct: 63 QFVEKANWIERFNITYHLGVDGISMWFVVLTALITVIVVIAAWEVITKNVGQYLASFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 +++G F + D +LFY+FFEA+LIPM++IIGVWGG+ R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGIMVGVFSAADGMLFYVFFEATLIPMYIIIGVWGGANRVYAAFKFFLYTLMGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + T + + ++ + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LLYLYIQTGTFDLAS-WQHAQIAMTPQVLLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F +GV+YDR+H+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLSIGVLYDRMHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A +M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+ ++L A Sbjct: 362 YGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAGGAAVTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V+ L D+ RE M+ +A LT+F G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAVANDHVKSLLDIGRREFFMLAVLAALTLFMGLYPKPFTDVMHVSVE 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLSH 486 >gi|220934174|ref|YP_002513073.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thioalkalivibrio sp. HL-EbGR7] gi|219995484|gb|ACL72086.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thioalkalivibrio sp. HL-EbGR7] Length = 504 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/499 (45%), Positives = 339/499 (67%), Gaps = 18/499 (3%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS+V + P +G + V++ + G R ++L S + F+ S+ ++ FD+G Sbjct: 4 DWPLLSLVIWTPIIGGILVLMAGDKMPDGARR---LSLFFSVLTFLISIPLFVHFDRGTH 60 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q +E WI F +YHLGVDGIS+ L++LTTF T ++++W+ IQ+ +YM AFL Sbjct: 61 EMQFVELLPWISTFNVNYHLGVDGISMPLILLTTFTTVLVVIAAWEVIQKRVSQYMAAFL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++E + G F +LD +LFY+FFE LIPMF++IG+WGG R+YA KFFLYTF GS+FML Sbjct: 121 IMEGFMNGVFAALDSVLFYVFFEGMLIPMFLVIGLWGGPNRVYATLKFFLYTFLGSVFML 180 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ M + +I+D + + + + Q +++AF +FA+KIPM+P HTWLP+AHV+A Sbjct: 181 VALIYMYTRSGSFAILDFHQL-QLGMTAQVLIFLAFLAAFAVKIPMWPVHTWLPDAHVEA 239 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT GSV LA IMLK+GGYG +RF LP+ P AS ++ +SLIA++Y V++VQ D+ Sbjct: 240 PTGGSVVLAAIMLKIGGYGFLRFSLPITPDASMALDWLLITMSLIAVVYIGFVALVQQDM 299 Query: 300 KKLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCV 347 KKLIAYSSIAHMG+VT+GIF G G+EGAM QM+SHG +S+A+F CV Sbjct: 300 KKLIAYSSIAHMGFVTLGIFIVFMIYNNTGNWQGAALGIEGAMVQMISHGFISAAMFLCV 359 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 GV+YDRLH+R I YGG+V+ MP ++ ++F MAN GLPGTSGF+GEF+VI++ F+ + Sbjct: 360 GVLYDRLHSRQIADYGGVVNTMPWFSAFFVLFAMANTGLPGTSGFVGEFMVILASFKANF 419 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 +A LA+ ++L+A Y+LWL ++VVFG + V +L+DL+ RE ++ +A + + G+ Sbjct: 420 WIAFLAATTLILAAGYTLWLVKRVVFGEIANDNVAKLQDLNRREFLVLGILAFVVLLLGV 479 Query: 468 YPVPIRDTFSVPLSSIIEN 486 +P P+ + + ++I++ Sbjct: 480 WPAPLLEVMHATVDNLIQH 498 >gi|325983277|ref|YP_004295679.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosomonas sp. AL212] gi|325532796|gb|ADZ27517.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosomonas sp. AL212] Length = 494 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/485 (46%), Positives = 331/485 (68%), Gaps = 4/485 (0%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS++ +LP L GV V F++ R +AL S + F+ ++ +++ FD + Sbjct: 6 PLLSLIIWLPILFGVAV--FATGGDHNARLARWIALIGSILGFLVAIPLYTNFDSTTGAM 63 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E + W + F +YH+GVDGIS+ L++L F+TP +++ W+ I+E +Y+ AFLV+ Sbjct: 64 QFLEDHVWFERFNVNYHIGVDGISMPLILLNCFITPLVVVAGWEVIKERVSQYLGAFLVM 123 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 +V G F SLD +LFY+F+EASLIPMF+IIG+WGG R+YAA KFFLYT GS+ ML A Sbjct: 124 SGIVNGVFSSLDAVLFYVFWEASLIPMFLIIGIWGGPNRVYAAIKFFLYTLLGSLLMLIA 183 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + + + S I+ Y P + Q ++IAF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 184 FIYLYHASEGSFSIEDYHKLAIPMTPQILIFIAFLLAFAVKVPMWPVHTWLPDAHVEAPT 243 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA I+LK+GGYG +RF LP+ P AS Y A ++ LSL+A++Y L++++Q D+KK Sbjct: 244 GGSVVLAAILLKLGGYGFLRFSLPIAPDASHYLAEMMIVLSLVAVVYIGLIALMQVDMKK 303 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+AHMG+VT+G F G+EG M QM+SHG +S A+F CVGV+YDRLH+R I Sbjct: 304 LIAYSSVAHMGFVTLGFFLLNAYGIEGGMVQMISHGFISGAMFLCVGVLYDRLHSRQIAD 363 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VIMS + + A LA+ ++ A Sbjct: 364 YGGVVNKMPVFAAFFMLFAMANAGLPGTSGFVGEFMVIMSAVKVNFWYAFLAATTLIFGA 423 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V+FGV V+ L+D+S RE ++ +A+ ++ GIYP P+ + + Sbjct: 424 AYTLWMYKRVIFGVVASPAVESLQDISKREFGLLAILAISVLWIGIYPFPLTEVMHATVD 483 Query: 482 SIIEN 486 ++ + Sbjct: 484 QLLTH 488 >gi|323525448|ref|YP_004227601.1| proton-translocating NADH-quinone oxidoreductase subunit M [Burkholderia sp. CCGE1001] gi|323382450|gb|ADX54541.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. CCGE1001] Length = 496 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 228/485 (47%), Positives = 338/485 (69%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LSI +LP L G+ V+ S G + +AL S ++F+ ++ + + FD + Sbjct: 5 PILSIAIWLPILFGLLVLAIGSDRNPGPARW--IALIGSIVSFLVTIPLITGFDSSTADL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E +WI+ F +YHLGVDGIS+ VVLT +T ++++W+ I +N +Y+ +FL+L Sbjct: 63 QFVEKANWIERFNITYHLGVDGISMWFVVLTALITVIVVIAAWEIITKNVGQYLASFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 +++G F + D +LFY+FFEA+LIPM++IIGVWGG+ R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGIMVGVFSAADGMLFYVFFEATLIPMYIIIGVWGGANRVYAAFKFFLYTLMGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + T + + ++ + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LLYLYIQTGTFDLAT-WQHAQIAMTPQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F +GV+YDR+H+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLSIGVLYDRMHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A +M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+ ++L A Sbjct: 362 YGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAAGAAVTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V+ L D+ RE M+ +A LT+F G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAVANDHVKSLLDIGRREFFMLAVLAALTLFMGLYPKPFTDVMHVSVE 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLSH 486 >gi|316996017|dbj|BAD83480.2| NADH dehydrogenase subunit 4 [Nicotiana tabacum] Length = 495 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 235/483 (48%), Positives = 324/483 (67%), Gaps = 5/483 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + P LG ++LF R + L S I F++SL +W FD + FQ + Sbjct: 12 LSGLILCPVLGSIILLFIP--NSRIRLIRLIGLCASLITFLYSLVLWIQFDPSTAKFQFV 69 Query: 66 EYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E W+ Y +++LG+DGIS+ V+LTTFL P CIL W ++ +EY+IAFL+ E + Sbjct: 70 ESLRWLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFI 129 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIV 183 +I F LD+LLFY+FFE+ LIPMF+IIGVWG +R I AAY+ FLYT GS+FML AI+ Sbjct: 130 MIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQLFLYTLLGSVFMLLAIL 189 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 ++ ++ T+ + + ++F Q ++WIAFF SFA+K+PM P H WLP AHV+APTAG Sbjct: 190 LILFQTGTTDL-QILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAG 248 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI+LK+G YG +RF +P+FP A+ F P I+ LS IAIIY SL ++ Q D+KK+I Sbjct: 249 SVILAGIVLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKII 308 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM VTIG+FS G+ G++ MLSHGLVSSALF CVGV+YDR TR + YG Sbjct: 309 AYSSVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYG 368 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GLV MP ++ + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A Y Sbjct: 369 GLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAY 428 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLWLY +VV G K + + + DL+ RE + P V V+ G+YP D +S++ Sbjct: 429 SLWLYNRVVSGNLKPDFLHKFSDLNGREVFIFIPFLVGVVWMGVYPKVFLDCMHTSVSNL 488 Query: 484 IEN 486 +++ Sbjct: 489 VQH 491 >gi|157826245|ref|YP_001493965.1| NADH dehydrogenase subunit M [Rickettsia akari str. Hartford] gi|157800203|gb|ABV75457.1| NADH dehydrogenase subunit M [Rickettsia akari str. Hartford] Length = 493 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 228/492 (46%), Positives = 336/492 (68%), Gaps = 5/492 (1%) Query: 1 MNLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDK 57 + LP +SI FLP + V +++LF S +S + VA+ S + FI ++++ F+ Sbjct: 2 LELPIISISIFLPLISVLYILLFMSQSKKTDKSIYVMYVAVLSSVLTFISTIYILIEFNS 61 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++Q +E Y W+D +H+GVDGISI V LT+FLT CI+ S +I++ +EY++ Sbjct: 62 SNPAYQFVERYAWLDKIGLEFHVGVDGISIFFVALTSFLTLVCIIGSLFTIKKYIKEYLV 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL++ES IGAF S+++LLFY+FFEA L+PM++IIGVWGG RIYAA KFFLYTFFGS+ Sbjct: 122 CFLLMESFCIGAFTSVNLLLFYLFFEAILVPMYIIIGVWGGENRIYAALKFFLYTFFGSV 181 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F L +++ + + + + + ++ P Q +W A F +FAIKIPM P HTWLP+A Sbjct: 182 FFLLSLIYIYSKIHSFDLTYIPELTDNIPLFAQQILWWAIFIAFAIKIPMIPVHTWLPDA 241 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAPT+GSV LAGI++K+GGYG +R LLPL P SQ FA + +LS+IAIIYASLV++ Sbjct: 242 HVQAPTSGSVILAGILIKLGGYGFLRVLLPLLPSVSQEFAIYVIYLSIIAIIYASLVALA 301 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KK+IAYSSIAHMGYVTIGIFS +GV GA+FQMLSHG++SS LF VG +Y+RLH Sbjct: 302 QKDMKKMIAYSSIAHMGYVTIGIFSFTDAGVNGAIFQMLSHGVISSCLFLIVGTLYERLH 361 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 T++I YGG+ M A M+ + ++GLPGTSGFIGEFL ++ ++ + +A+ Sbjct: 362 TKEIAKYGGVASKMHVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGTYKVNVAATCVAAL 421 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G+++ A+Y L LY++++ G +++ +DL E + P+ +L ++FG+ P I + Sbjct: 422 GIIIGAVYMLKLYKEIMLGEITNKEIMHFRDLYKYEIISIAPLILLIIYFGLMPSSILNV 481 Query: 476 FSVPLSSIIENY 487 FS + +++ + Sbjct: 482 FSFSVKNLLVKF 493 >gi|285017804|ref|YP_003375515.1| NADH-quinone oxidoreductase chain m (nadh dehydrogenaseI chain m) (ndh-1, chain m) (nuo13) oxidoreductase [Xanthomonas albilineans GPE PC73] gi|283473022|emb|CBA15527.1| probable nadh-quinone oxidoreductase chain m (nadh dehydrogenaseI chain m) (ndh-1, chain m) (nuo13) oxidoreductase protein [Xanthomonas albilineans] Length = 500 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 231/485 (47%), Positives = 322/485 (66%), Gaps = 17/485 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P LS++ +LP +G +IL R + VAL + F S+ + + FD + Sbjct: 3 NWPLLSLLIWLPIVGGALILALRDAHAARWASLLVAL----LTFALSVPLLTGFDYASDA 58 Query: 62 FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E + WI Y Y+LG DGI++ L+VLTT +T ++ +W SI + +Y+ AFL+ Sbjct: 59 LQFVETHAWIPAYNIGYNLGADGIAVALIVLTTLVTVLALIGAWTSIDKRVNQYVAAFLI 118 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + +G F + D +LFY+FFEA LIPMF+IIG+WGG RIYAA KFFLYTF GS+ ML Sbjct: 119 LEGVTVGIFSATDAMLFYVFFEAMLIPMFLIIGIWGGPRRIYAAVKFFLYTFLGSVLMLV 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 ++ + + + + DLY +S Q W++ AF +FA+K+PMFP HTWLP+AHV+AP Sbjct: 179 GLIYLYLKGGSFQLADLYHLS-LTAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I LK+GGYG +RF LP+ P AS +A ++ LSLIA++Y LV++VQ D+K Sbjct: 238 TAGSVILAAIALKIGGYGFLRFNLPILPDASNEWAWLVIALSLIAVVYVGLVALVQDDMK 297 Query: 301 KLIAYSSIAHMGYVTIGIF-----------SGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 KLIAYSSIAHMG+VT+G F + G++GAM QM+SHG VS A+F CVGV Sbjct: 298 KLIAYSSIAHMGFVTLGAFVAFALVGFGSVDAARLGLQGAMVQMISHGFVSGAMFSCVGV 357 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 +YDR+H+R I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VIM+ FQ + Sbjct: 358 LYDRMHSRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVIMASFQTHPLL 417 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A A+ +V++A Y+LWLYR+V FG V +LKD++ RE ++ A+ + G+YP Sbjct: 418 AFGAATTLVITAAYTLWLYRRVFFGEVANAHVAELKDINGREALVLGVFALGVLALGLYP 477 Query: 470 VPIRD 474 P+ D Sbjct: 478 KPLTD 482 >gi|238028131|ref|YP_002912362.1| NADH dehydrogenase subunit M [Burkholderia glumae BGR1] gi|237877325|gb|ACR29658.1| NADH dehydrogenase subunit M [Burkholderia glumae BGR1] Length = 497 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 238/486 (48%), Positives = 333/486 (68%), Gaps = 7/486 (1%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRS--FFGVALGISTINFIFSLFVWSVFDKGRSS 61 P LS +LP + VIL +G R+ VAL S + F ++ + + FD ++ Sbjct: 5 PILSTAIWLPIVFGLVIL---AIGTDRKPGVIRWVALLGSLLGFAVTIPLVTGFDPSTAA 61 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q E WI+ F SYHLGVDGIS+ VVLT +T ++++W+ I EN +Y+ AFL+ Sbjct: 62 LQFQENVSWIERFNVSYHLGVDGISMWFVVLTALITVIVVVAAWEVITENVSQYLAAFLI 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L ++IG F + D LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ ML Sbjct: 122 LSGIMIGVFSAADGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLMLV 181 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ + E T + ++ +K + Q ++ AFF +FA+K+PM+P HTWLP+AHV+AP Sbjct: 182 ALIYLYRETHTFDL-AVWQGAKLAMTPQLLLFAAFFLAFAVKVPMWPVHTWLPDAHVEAP 240 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LA IMLK+G YG +RF LP+ P AS Y APV+ LSL+A+IY LV+MVQTD+K Sbjct: 241 TGGSVVLAAIMLKLGAYGFLRFSLPVTPDASHYLAPVVIALSLVAVIYIGLVAMVQTDMK 300 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KL+AYSSIAHMG+VT+G F GVEGA+ QM+SHG VS A+F C+GV+YDRLHTR+I Sbjct: 301 KLVAYSSIAHMGFVTLGFFIFSPLGVEGAIVQMISHGFVSGAMFLCIGVLYDRLHTRNIA 360 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGG+V+ MP++A ++F MAN GLPGTSGF+GEF+VI++ + + +A A F ++L Sbjct: 361 DYGGVVNVMPKFATFALLFAMANCGLPGTSGFVGEFMVILASVKFNFWIAFGAGFTLILG 420 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LW+Y++V FG EKV +LKD+ RE M+ +A T+ G+YP P D V + Sbjct: 421 AGYTLWMYKRVYFGKVVNEKVTRLKDIGAREFSMLAVLAAFTLLMGLYPKPFTDVMHVSV 480 Query: 481 SSIIEN 486 +++ + Sbjct: 481 ENLLSH 486 >gi|325915551|ref|ZP_08177862.1| NADH dehydrogenase subunit M [Xanthomonas vesicatoria ATCC 35937] gi|325538267|gb|EGD09952.1| NADH dehydrogenase subunit M [Xanthomonas vesicatoria ATCC 35937] Length = 491 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 229/477 (48%), Positives = 319/477 (66%), Gaps = 19/477 (3%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 +LP +G +IL R + +L ++ F+ SL + +D G + Q IE + W Sbjct: 3 WLPIIGGALILALRNAETARWA----SLAVAVATFVLSLPLLG-YDTGNDAMQFIELHAW 57 Query: 71 ID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAF 129 I Y Y+LGVDGI++ L+VLTT +T ++ +W+SI + +Y+ AFL+LE + +G F Sbjct: 58 IPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGIF 117 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML +V + + Sbjct: 118 AATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLYLKG 177 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + + DLYA+ + Q W++ AF +FA+K+PMFP HTWLP+AHV+APTAGSV LA Sbjct: 178 GSFQLADLYAL-QLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAA 236 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I LK+GGYG +RF LP+ P AS FA ++ LSLIA++Y LV++VQ D+KKL+AYSSIA Sbjct: 237 IALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVVYVGLVALVQDDMKKLVAYSSIA 296 Query: 310 HMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 HMG+VT+G F + G++GAM QM+SHG VS A+F C+GV+YDR+HTR Sbjct: 297 HMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHTR 356 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ VA A+ + Sbjct: 357 RIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFAAATTL 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 V++A Y+LWLY++V FG V +LKD++ RE ++ A + G+YP P+ D Sbjct: 417 VITAAYTLWLYKRVFFGEVANAHVAELKDINGREAFVLGVFAAGVLALGLYPKPLTD 473 >gi|332285005|ref|YP_004416916.1| putative monovalent cation/H+ antiporter subunit A [Pusillimonas sp. T7-7] gi|330428958|gb|AEC20292.1| putative monovalent cation/H+ antiporter subunit A [Pusillimonas sp. T7-7] Length = 495 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 226/494 (45%), Positives = 329/494 (66%), Gaps = 10/494 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGR 59 LP+L++ F+P + ++L LG R L + S F+ +L ++ F+ Sbjct: 5 TLPWLTLSIFVPIVAGLIVLL---LGRDDRPGLTRVLSLLGSVAGFLVTLPLYFGFNPDT 61 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q +E WI+ F +YHLG+DGISI V+LT F+T +L+ W+ I +YM AF Sbjct: 62 ADMQFVEKASWIETFAVNYHLGIDGISIWFVLLTAFITIIVVLAGWEVITSRVSQYMAAF 121 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L +++G F SLD +LFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 122 LILSGLMVGVFSSLDGMLFYVFFEATLIPMYLIIGVWGGPNRVYAAFKFFLYTLMGSLLT 181 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A + + W S D+ + P + Q ++IA F +FA+K+PM+P HTWLP+AH Sbjct: 182 LIAFIYL-WHAADGSF-DIQTWHELPLGMTAQTLIFIALFAAFAVKVPMWPVHTWLPDAH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT GSV LA IMLK+G YG +RF LP+ P AS A ++ LSLIA+IY LV++VQ Sbjct: 240 VEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHSLAGIVIALSLIAVIYIGLVAIVQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+KKL+AYSS+AHMG+VT+G F +G+EGA+ QM+SHG VS A+F C+GV+YDRLHT Sbjct: 300 DDMKKLVAYSSVAHMGFVTLGFFIFNTAGMEGAIVQMISHGFVSGAMFLCIGVLYDRLHT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I YGG+++ MPR+A ++F+MAN GLP TSGF+GEF VIM Q + + +LA+ Sbjct: 360 RRIDDYGGVINVMPRFATFFLLFSMANAGLPATSGFVGEFTVIMGAVQYNYWIGLLAATA 419 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++L A YSLW+Y++V FG + V+ + DLS RE ++ +A+ ++ GIYP P D Sbjct: 420 LILGASYSLWMYKRVAFGAIANDNVRGMSDLSSREFFIMGLMAIAVLYMGIYPKPFTDVM 479 Query: 477 SVPLSSIIENYTLK 490 V + +++++ ++ Sbjct: 480 HVSVEALLQHVSIS 493 >gi|297181768|gb|ADI17949.1| NADH:ubiquinone oxidoreductase subunit 4 (chain m) [uncultured Desulfobacterales bacterium HF0200_07G10] Length = 533 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/489 (44%), Positives = 335/489 (68%), Gaps = 10/489 (2%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 FL+ +TFLPF G ++F + AL ++ +F+ SLF+W+ FD Q Sbjct: 2 FLTFITFLPFFGAVCLIFMP--KENESAIKQTALAVAVTDFLLSLFLWTNFDNTTHKMQF 59 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 WI+ + +YH+G+DGIS+LL V+TTFLT C+++SW ++++ REYMIA L L + Sbjct: 60 GFNIPWIEQWGINYHIGLDGISLLLYVMTTFLTMICVIASW-DVKKHIREYMIAMLALST 118 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++G F++LD+ +FY+F+E L+PM++I+GVWGG RIYA+ KFFL+T GS+ ML AI+ Sbjct: 119 GMLGVFIALDLFMFYVFWEFQLVPMYIIVGVWGGPRRIYASIKFFLFTAVGSLLMLVAIL 178 Query: 184 VMCWE-KKTSSIID---LYAMSKFPFSIQ--YWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + +KT+ + LY S+ W+W+AFF +FAIK+PMFPFHTWLP+AHV Sbjct: 179 WIYFHIQKTTGVATADILYITEHLDVSLDTSKWLWMAFFLAFAIKVPMFPFHTWLPDAHV 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAG++LKMG YG +RF LP FP AS F P++ +LS+I I+Y +LV+MVQ Sbjct: 239 EAPTAGSVILAGVLLKMGTYGFLRFNLPFFPQASYEFVPMVAWLSIIGIVYGALVAMVQE 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KKL+AYSS++H+G++ +GIF+ G++GA+ Q ++HG+ +SALF VG++YDR HTR Sbjct: 299 DLKKLVAYSSVSHLGFIMLGIFALNPYGIQGALIQNINHGISTSALFLLVGIVYDRRHTR 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I +GGL MP+Y V M+ ++++GLPG +GF+GEFLV++ +FQ + A A+ GV Sbjct: 359 MIAEFGGLAKIMPKYTVCFMIVALSSIGLPGMNGFVGEFLVLLGIFQVNGLWAACATSGV 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +L+A Y LW++++V+F K K + +KD++ RE + P+ +L + G+YP TF Sbjct: 419 ILAACYILWMFQRVMFLELKNPKNKVMKDMNTREMITIAPLVILIFWIGLYPNTFMKTFD 478 Query: 478 VPLSSIIEN 486 ++ ++ Sbjct: 479 SSVNHLVSK 487 >gi|22550342|ref|NP_689375.1| NADH dehydrogenase subunit 4 [Chaetosphaeridium globosum] gi|22417008|gb|AAM96607.1|AF494279_12 NADH dehydrogenase subunit 4 [Chaetosphaeridium globosum] Length = 485 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 230/455 (50%), Positives = 321/455 (70%), Gaps = 5/455 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTF 94 V L IS I F++SL W FD + FQ +E W+ + +++ G+DGIS+L ++LTTF Sbjct: 33 VGLSISLITFVYSLLFWICFDNSCTKFQFVEQIPWLSFSNINFYYGIDGISLLFLILTTF 92 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P C+L W SI + REY +AFLVLE+ ++ F LD+LLF++FFE+ LIPMF+IIGV Sbjct: 93 LVPSCLLVGWSSISKYQREYFVAFLVLEAFMLAVFCMLDVLLFFVFFESVLIPMFIIIGV 152 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+FFLYT FGS+FML AI+ + ++ T+ + LY+ +++ Q ++I Sbjct: 153 WGSRQRKIRAAYQFFLYTLFGSVFMLLAILFIYFQTGTTDVQILYS-TEWSTRRQILLFI 211 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF SFA+KIPM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +P+FP A+ Y Sbjct: 212 AFFASFAVKIPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGLLRFSMPMFPEATAY 271 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P I+ LS+IAIIY SL ++ Q D+KK+IAYSS+AHM +VTIG+FS G+EG++ M Sbjct: 272 FTPFIYTLSVIAIIYTSLTTLRQIDLKKIIAYSSVAHMNFVTIGMFSLNVQGIEGSILLM 331 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLVSSALF CVG +YDR HTR + YGGL MP ++++ + FT+ NM LPGTS F+ Sbjct: 332 LSHGLVSSALFLCVGALYDRHHTRLVKYYGGLCSTMPIFSLIFLFFTLGNMSLPGTSSFV 391 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+++ FQ++ ++A LA+ G+VL A YS+WLY +VVFG + + DL+ RE C Sbjct: 392 GEFLILVGAFQSNTSIATLAAIGMVLGAAYSIWLYNRVVFG--NWKHIHNFTDLNRRELC 449 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 ++ P + ++ GIYP D ++++I T Sbjct: 450 LIAPFVIGVLWMGIYPEIFLDCMHSSVNNLISMTT 484 >gi|325267333|ref|ZP_08133995.1| NADH-quinone oxidoreductase subunit M [Kingella denitrificans ATCC 33394] gi|324981270|gb|EGC16920.1| NADH-quinone oxidoreductase subunit M [Kingella denitrificans ATCC 33394] Length = 499 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 220/475 (46%), Positives = 322/475 (67%), Gaps = 12/475 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGRSSFQ 63 LS+ +LP L ++L + G R+ L + +F +L +++ FD+ +Q Sbjct: 7 LSLTIWLPILAGVLVLAT---GSDERAPLARILAFLGAAASFAVTLPLFTHFDRTSGGYQ 63 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E + WI +Y LGVDGIS+L ++L +F+T +L+ W+ IQ+ +YM AFL++ Sbjct: 64 FQELHAWIPALNLNYALGVDGISVLFIILNSFITLMVVLAGWQVIQKRAAQYMAAFLIMT 123 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++ GAF + D +LFY+FFE LIP+++IIG+WGG+ R+YAA K FLYT GS+ ML A+ Sbjct: 124 GLINGAFAARDAILFYVFFEGMLIPLYLIIGMWGGARRMYAAMKLFLYTLAGSLLMLIAL 183 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + + + ++ I DL + P +Q +++AFF SFA+K+PMFP HTWLP+AHV+APT Sbjct: 184 IYLGAQAESFMITDLQNLKNIPLGVQQLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTG 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA I LK+G YG +RF LP+ P AS+YFAP I LSLIA++Y LV++VQTD+KKL Sbjct: 244 GSMVLAAITLKVGAYGFLRFALPILPDASRYFAPAIIVLSLIAVVYIGLVALVQTDMKKL 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGV------EGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 +AYSSI+HMG+VT+G F M +G +GA+ QM+SHG VS+A+FFC+GV+YDRLHT Sbjct: 304 VAYSSISHMGFVTLGFFMFMANGQPEAWGFKGAIMQMISHGFVSAAMFFCIGVMYDRLHT 363 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+VIM V LA+ Sbjct: 364 RNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMVIMGATHYHLGVGALAAVT 423 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 ++L A Y+LW+Y++ +FG V ++KD++ RE ++ +AV + G+YP P Sbjct: 424 LILGASYTLWMYKRTIFGDITNPHVAEMKDINCREFAVLTILAVAVLGMGLYPEP 478 >gi|91782624|ref|YP_557830.1| NADH dehydrogenase subunit M [Burkholderia xenovorans LB400] gi|296160641|ref|ZP_06843456.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. Ch1-1] gi|91686578|gb|ABE29778.1| NADH dehydrogenase subunit M [Burkholderia xenovorans LB400] gi|295889167|gb|EFG68970.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. Ch1-1] Length = 496 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 228/485 (47%), Positives = 338/485 (69%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LSI +LP L G+ V+ S + +AL S ++F+ ++ + + FD + Sbjct: 5 PILSIAIWLPILVGLLVLAIGSDRNPAPARW--IALIGSVVSFLVTIPLITGFDSSTADL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E +WI+ F +YHLGVDGIS+ VVLT +T ++++W+ I +N +Y+ AFL+L Sbjct: 63 QFVEKANWIERFNITYHLGVDGISMWFVVLTALITVIVVIAAWEVITKNVAQYLAAFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 +++G F + D +LFY+FFEA+LIPM++IIGVWGG+ R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGIMVGVFSAADGMLFYVFFEATLIPMYIIIGVWGGANRVYAAFKFFLYTLMGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + T + + ++ + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LLYLYVQTGTFDLAT-WQHAQIAMTPQVLLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFLRFSLPITPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F +GV+YDR+H+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLSIGVLYDRMHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A +M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+ ++L A Sbjct: 362 YGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAGGAAVTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V+ L D++ RE M+ +A LT+F G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAIANDHVRSLLDINRREFFMLAVLAALTLFMGLYPKPFTDVMHVSVE 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLSH 486 >gi|329907894|ref|ZP_08274720.1| NADH-ubiquinone oxidoreductase chain M [Oxalobacteraceae bacterium IMCC9480] gi|327546876|gb|EGF31794.1| NADH-ubiquinone oxidoreductase chain M [Oxalobacteraceae bacterium IMCC9480] Length = 500 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/451 (48%), Positives = 318/451 (70%), Gaps = 1/451 (0%) Query: 41 STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFC 99 S ++F+ +L + FD Q E WI+ F Y LG+DGIS+ LVVLT+F+T Sbjct: 47 SVVSFLVTLPLIQRFDNAAHGMQFAEKMPWIERFNIQYFLGIDGISLWLVVLTSFITIIV 106 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 ++S+W+ IQ+ +YM AFL+L +++G F +LD +LFY+FFEA+LIPMF+IIGVWGG Sbjct: 107 VISAWEVIQKKVAQYMGAFLILSGLMVGVFCALDGMLFYVFFEATLIPMFIIIGVWGGGN 166 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF 219 R+YAA KFFLYTFFGS+ ML A++ + + S I + P ++Q +++AF +F Sbjct: 167 RVYAAIKFFLYTFFGSLLMLVALLYLYFASGGSFDITYWHDLPLPLNVQIPLFLAFLMAF 226 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 A+K+PM+P HTWLP+AHV+APT GSV LA IMLK+G YG +RF LP+ P AS Y AP++ Sbjct: 227 AVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHYLAPMMI 286 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 LSLIA+IY LV++VQTD+KKL+AYSSIAHMG+VT+G F+ V+G + QM+SHG V Sbjct: 287 TLSLIAVIYIGLVALVQTDMKKLVAYSSIAHMGFVTLGFFAFNDMAVQGGIVQMVSHGFV 346 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 S+A+F C+GV+YDR+HTR I YGG+V+ MP++A ++F++AN GLP TSGF+GEF+VI Sbjct: 347 SAAMFLCIGVLYDRMHTRAIADYGGVVNTMPKFAAFFVLFSLANCGLPATSGFVGEFMVI 406 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIA 459 + + + + +LA ++ A YSLWL ++V+FG +V +LKDLSLRE M+ +A Sbjct: 407 LGAIKFNFWIGLLAGTALIFGAAYSLWLVKRVIFGAVANPQVAKLKDLSLREFGMLGVLA 466 Query: 460 VLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 + + G+YP PI D ++ ++++ ++ Sbjct: 467 IAVLVMGVYPAPITDAMQTSVADLLQHVSIS 497 >gi|112253904|ref|YP_717159.1| NADH dehydrogenase subunit 4 [Brassica napus] gi|37591106|dbj|BAC98908.1| NADH dehydrogenase subunit 4 [Brassica napus] Length = 495 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 235/483 (48%), Positives = 323/483 (66%), Gaps = 5/483 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + P LG ++LF R + L S I F++SL +W FD + FQ + Sbjct: 12 LSGLILCPVLGSIILLFIP--NSRIRLIRLIGLCASLITFLYSLVLWIQFDSSTAKFQFV 69 Query: 66 EYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E W+ Y +++LG+DGIS+ V+LTTFL P CIL W ++ +EY+IAFL+ E + Sbjct: 70 ESLRWLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFL 129 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIV 183 +I F LD+LLFY+FFE+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+ Sbjct: 130 MIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAIL 189 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 ++ ++ T+ + + ++F Q ++WIAFF FA+K+PM P H WLP AHV+APTAG Sbjct: 190 LILFQTGTTDL-QILLTTEFSERRQIFLWIAFFAFFAVKVPMVPVHIWLPEAHVEAPTAG 248 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI+LK G YG +RF +P+FP A+ F P I+ LS IAIIY SL ++ Q D+KK+I Sbjct: 249 SVILAGILLKFGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKII 308 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM VTIG+FS G+ G++ MLSHGLVSSALF CVGV+YDR TR + YG Sbjct: 309 AYSSVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYG 368 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GLV MP ++ + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A Y Sbjct: 369 GLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAY 428 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLWLY +VV G K + + + DL+ RE + P V V+ G+YP D +S++ Sbjct: 429 SLWLYNRVVSGNLKPDFLHKFSDLNGREVFIFIPFLVGLVWMGVYPKVFLDCMHTSVSNL 488 Query: 484 IEN 486 +++ Sbjct: 489 VQH 491 >gi|255019919|ref|ZP_05291994.1| NADH-ubiquinone oxidoreductase chain M [Acidithiobacillus caldus ATCC 51756] gi|254970699|gb|EET28186.1| NADH-ubiquinone oxidoreductase chain M [Acidithiobacillus caldus ATCC 51756] Length = 494 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 215/440 (48%), Positives = 313/440 (71%), Gaps = 1/440 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 VAL S + F +L + + FD ++ Q +E WI YHLGVDGIS+ V+LT+F Sbjct: 35 VALLGSVVTFAITLEILAGFDTRTAAMQFVERIPWIPALNIDYHLGVDGISLWFVLLTSF 94 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 LT ++SSW +++ +++ AFL+++ ++IG F +LD +LFY F+EA+LIPMF+IIGV Sbjct: 95 LTILVVISSWTNVERRLAQFLGAFLIMDGLMIGVFCALDAILFYFFWEATLIPMFLIIGV 154 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 WGG R+YA KFFLYTF GS+ ML A++ + + S + + + Q W+++A Sbjct: 155 WGGPRRVYATIKFFLYTFLGSVLMLVALLYLHFHSGGSFNLLTFQNTPLGMVAQIWIFLA 214 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF +FA+KIPM+P HTWLP+AHV+APTAGSV LA +MLKMG YG +R LP+ P AS + Sbjct: 215 FFLAFAVKIPMWPVHTWLPDAHVEAPTAGSVILAAVMLKMGAYGFLRLSLPITPDASHHL 274 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 A ++ LSLIAI+Y +LV++VQ D+KKL+AYSSIAHMG+VT+G F + +EG + QML Sbjct: 275 AWLMVLLSLIAIVYIALVAIVQQDMKKLVAYSSIAHMGFVTLGFFVFDATAMEGGIIQML 334 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHG +S+A+F C+GV+YDR+HTRDI AYGG+ + MP +A MM+F M N+GLPGTSGF+G Sbjct: 335 SHGFISAAMFLCIGVLYDRMHTRDIHAYGGVANVMPIFASFMMLFAMGNVGLPGTSGFVG 394 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EF+V++ +Q A++A+ G++ A Y+LWL+++V+FG +V L+DL+L+E + Sbjct: 395 EFMVVLGTYQVQPWAAIVAATGLITGAGYTLWLFKRVIFGPVIHPQVAALQDLNLQEFLV 454 Query: 455 VYPIAVLTVFFGIYPVPIRD 474 + +AVLT+ G++P P D Sbjct: 455 LGSLAVLTLLMGVWPAPFLD 474 >gi|71275678|ref|ZP_00651963.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Xylella fastidiosa Dixon] gi|71897778|ref|ZP_00680004.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Xylella fastidiosa Ann-1] gi|71163569|gb|EAO13286.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Xylella fastidiosa Dixon] gi|71732333|gb|EAO34387.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Xylella fastidiosa Ann-1] Length = 501 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 239/486 (49%), Positives = 325/486 (66%), Gaps = 18/486 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P LS++ +LP +G +I+ + R + VAL F FSL + +D + + Sbjct: 3 NWPLLSVLIWLPIIGGLLIMGLRNVHVARWAALAVALA----TFGFSLHLLGGYDIAKDA 58 Query: 62 FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E + WI Y Y+LGVDGI++ LV+LTT +T ++ SW +I + +Y+ AFL+ Sbjct: 59 LQFVEQHVWIQTYSIGYNLGVDGIAVALVLLTTLVTVLVLIGSWGAINQRVPQYVAAFLI 118 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + IG F + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML Sbjct: 119 LEGVTIGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLV 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 ++ + + + + DLYAM + Q W++ AF +FA+K+PMFP HTWLP+AHV+AP Sbjct: 179 GLIYLYLKGGSFQLADLYAM-QLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I LK+GGYG +RF LP+ P AS FA V+ LSLIA+IY LV++VQ D+K Sbjct: 238 TAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIALSLIAVIYVGLVALVQEDMK 297 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KLIAYSSIAHMG+VT+GIF + G++GAM QM+SHG VS A+F C+G Sbjct: 298 KLIAYSSIAHMGFVTLGIFISFTLARDFGNTDAARLGLQGAMVQMISHGFVSGAMFTCIG 357 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDRLHTR I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ Sbjct: 358 VLYDRLHTRRIADYGGVVNVMPWFATFAMLFYMANAGLPGTSGFVGEFMVILASFQKHPL 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 VA A +V++A Y+LWLY++V FG V LKD+++RE ++ A+ + G+Y Sbjct: 418 VAFGAGATLVITAAYTLWLYKRVFFGEVANTHVAALKDINIREASVLVLFAIGVLVLGLY 477 Query: 469 PVPIRD 474 P P+ D Sbjct: 478 PKPLID 483 >gi|44888246|sp|P93313|NU4M_ARATH RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 Length = 495 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 235/483 (48%), Positives = 323/483 (66%), Gaps = 5/483 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + P LG ++LF R + L S I F++SL +W FD + FQ + Sbjct: 12 LSGLILCPVLGSIILLFIP--NSRIRLIRLIGLCASLITFLYSLVLWIQFDSSTAKFQFV 69 Query: 66 EYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E W+ Y +++LG+DGIS+ V+LTTFL P CIL W ++ +EY+IAFL+ E + Sbjct: 70 ESLRWLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFL 129 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIV 183 +I F LD+LLFY+F E+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+ Sbjct: 130 MIAVFCMLDLLLFYVFPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAIL 189 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 ++ ++ T+ + + ++F Q ++WIAFF SFA+K+PM P H WLP AHV+APTAG Sbjct: 190 LILFQTGTTDL-QILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAG 248 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI+LK G YG +RF +P+FP A+ F P I+ LS IAIIY SL ++ Q D+KK+I Sbjct: 249 SVILAGILLKFGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKII 308 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM VTIG+FS G+ G++ MLSHGLVSSALF CVGV+YDR TR + YG Sbjct: 309 AYSSVAHMNLVTIGMFSPNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYG 368 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GLV MP ++ + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A Y Sbjct: 369 GLVSTMPNFSTIFFSFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAY 428 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLWLY +VV G K + + + DL+ RE + P V V+ G+YP D +S++ Sbjct: 429 SLWLYNRVVSGNLKPDFLHKFSDLNGREVFIFIPFLVGLVWMGVYPKVFLDCMHTSVSNL 488 Query: 484 IEN 486 +++ Sbjct: 489 VQH 491 >gi|118340557|gb|ABK80607.1| putative NADH:ubiquinone oxidoreductase subunit M [uncultured marine Nitrospinaceae bacterium] Length = 533 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 220/489 (44%), Positives = 333/489 (68%), Gaps = 10/489 (2%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 FL+ +TFLPFLG + F + AL ++ +F+ SL +W+ FD Q Sbjct: 2 FLTFITFLPFLGAVCLAFMPKENVS--AIKQTALAVAVADFLLSLLLWTNFDNTTHKMQF 59 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 WI+ + +YH+G+DGIS+LL V+TTFLT C+++SW ++++ REYMIA L L + Sbjct: 60 GLNIPWIEQWGINYHIGLDGISLLLYVMTTFLTMICVIASW-DVKKHIREYMIAMLSLST 118 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++G F++LD+ +FY+F+E L+PM++I+GVWGG RIYA+ KFFL+T GS+ ML AI+ Sbjct: 119 GMLGVFIALDLFMFYVFWEFQLVPMYIIVGVWGGPRRIYASIKFFLFTAVGSLLMLVAIL 178 Query: 184 VMCWE-KKTSSIID---LYAMSKFPFSIQ--YWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + ++T+ + LY S+ W+W+AFF +FAIK+PMFPFHTWLP+AHV Sbjct: 179 WIYFHIQQTTGVATADILYITEHLDVSLDASKWLWLAFFLAFAIKVPMFPFHTWLPDAHV 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAG++LKMG YG +RF LP FP AS F P++ +LS+I IIY +LV+MVQ Sbjct: 239 EAPTAGSVILAGVLLKMGTYGFLRFNLPFFPQASYEFVPIVAWLSIIGIIYGALVAMVQE 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KKL+AYSS++H+G++ +GIF+ G++GA+ Q ++HG+ +SALF VG++YDR HTR Sbjct: 299 DLKKLVAYSSVSHLGFIMLGIFALNPYGIQGALIQNINHGISTSALFLLVGIVYDRRHTR 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I +GGL MP+Y V M+ ++++GLPG +GF+GEFLV++ +FQ + A A+ GV Sbjct: 359 LISEFGGLAKIMPKYTVCFMIVALSSIGLPGMNGFVGEFLVLLGIFQVNGLWAACATSGV 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +L+A Y LW++++V+F K K +KD++ RE + P+ VL + G+YP TF Sbjct: 419 ILAACYILWMFQRVMFLELKNPKNMDMKDMNTREMITIAPLIVLIFWIGLYPNTFMKTFD 478 Query: 478 VPLSSIIEN 486 ++ ++ Sbjct: 479 ASVNHLVSK 487 >gi|187923352|ref|YP_001894994.1| NADH dehydrogenase subunit M [Burkholderia phytofirmans PsJN] gi|187714546|gb|ACD15770.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia phytofirmans PsJN] Length = 496 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 230/485 (47%), Positives = 337/485 (69%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LSI +LP L G+ V+ S + +AL S ++F+ ++ + + FD + Sbjct: 5 PILSIAIWLPILVGLLVLAIGSDQNPAPARW--IALIGSVVSFLVTIPLITGFDSSTADL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E +WI+ F +YHLGVDGIS+ VVLT +T ++++W+ I + +Y+ AFL+L Sbjct: 63 QFVEKANWIERFNITYHLGVDGISMWFVVLTALITVIVVIAAWEVITKKVGQYLAAFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 +++G F S D +LFY+FFEA+LIPM++IIGVWGG+ R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGIMVGVFSSADGMLFYVFFEATLIPMYIIIGVWGGANRVYAAFKFFLYTLMGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + T + + ++ + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LLYLYIQTGTFDLAT-WQHAQIAMTPQVLIFIAFFMAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APVI LSLIA+IY LV+MVQTD+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFVRFSLPIAPDASHFLAPVIVTLSLIAVIYIGLVAMVQTDMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F +GV+YDR+H+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLSIGVLYDRMHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A +M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+ ++L A Sbjct: 362 YGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAGGAAVTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG V+ L D++ RE M+ +A LT+F G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAIANNHVKGLLDINRREFFMLAVLAALTLFMGLYPKPFTDVMHVSVE 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLAH 486 >gi|170729501|ref|YP_001774934.1| NADH dehydrogenase subunit M [Xylella fastidiosa M12] gi|167964294|gb|ACA11304.1| NADH dehydrogenase (quinone) [Xylella fastidiosa M12] Length = 501 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 239/486 (49%), Positives = 324/486 (66%), Gaps = 18/486 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P LS++ +LP +G +I+ R + VAL F FSL + +D + + Sbjct: 3 NWPLLSVLIWLPIIGGLLIMGLRNAHVARWAALAVALA----TFGFSLHLLGGYDIAKDA 58 Query: 62 FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E + WI Y Y+LGVDGI++ LV+LTT +T ++ SW +I + +Y+ AFL+ Sbjct: 59 LQFVEQHVWIQTYSIGYNLGVDGIAVALVLLTTLVTVLVLIGSWGAINQRVPQYVAAFLI 118 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + IG F + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML Sbjct: 119 LEGVTIGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLV 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 ++ + + + + DLYAM + Q W++ AF +FA+K+PMFP HTWLP+AHV+AP Sbjct: 179 GLIYLYLKGGSFQLADLYAM-QLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I LK+GGYG +RF LP+ P AS FA V+ LSLIA+IY LV++VQ D+K Sbjct: 238 TAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIALSLIAVIYVGLVALVQEDMK 297 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KLIAYSSIAHMG+VT+GIF + G++GAM QM+SHG VS A+F C+G Sbjct: 298 KLIAYSSIAHMGFVTLGIFISFTLARDFGNTDAARLGLQGAMVQMISHGFVSGAMFTCIG 357 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDRLHTR I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ Sbjct: 358 VLYDRLHTRRIADYGGVVNVMPWFATFAMLFYMANAGLPGTSGFVGEFMVILASFQKHPL 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 VA A +V++A Y+LWLY++V FG V LKD+++RE ++ A+ + G+Y Sbjct: 418 VAFGAGATLVITAAYTLWLYKRVFFGEVANTHVAALKDINIREASILVLFAIGVLVLGLY 477 Query: 469 PVPIRD 474 P P+ D Sbjct: 478 PKPLID 483 >gi|71897866|ref|ZP_00680092.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Xylella fastidiosa Ann-1] gi|71732421|gb|EAO34475.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Xylella fastidiosa Ann-1] Length = 501 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 239/486 (49%), Positives = 324/486 (66%), Gaps = 18/486 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P LS++ +LP +G +I+ R + VAL F FSL + +D + + Sbjct: 3 NWPLLSVLIWLPIIGGLLIMGLRNAHVARWAALAVALA----TFGFSLHLLGGYDIAKDA 58 Query: 62 FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E + WI Y Y+LGVDGI++ LV+LTT +T ++ SW +I + +Y+ AFL+ Sbjct: 59 LQFVEQHVWIQTYSIGYNLGVDGIAVALVLLTTLVTVLVLIGSWGAINQRVPQYVAAFLI 118 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + IG F + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML Sbjct: 119 LEGVTIGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLV 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 ++ + + + + DLYAM + Q W++ AF +FA+K+PMFP HTWLP+AHV+AP Sbjct: 179 GLIYLYLKGGSFQLADLYAM-QLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I LK+GGYG +RF LP+ P AS FA V+ LSLIA+IY LV++VQ D+K Sbjct: 238 TAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIALSLIAVIYVGLVALVQEDMK 297 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KLIAYSSIAHMG+VT+GIF + G++GAM QM+SHG VS A+F C+G Sbjct: 298 KLIAYSSIAHMGFVTLGIFIAFTLARDFGNTDAARLGLQGAMVQMISHGFVSGAMFTCIG 357 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDRLHTR I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ Sbjct: 358 VLYDRLHTRRIADYGGVVNVMPWFATFAMLFYMANAGLPGTSGFVGEFMVILASFQKHPL 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 VA A +V++A Y+LWLY++V FG V LKD+++RE ++ A+ + G+Y Sbjct: 418 VAFGAGATLVITAAYTLWLYKRVFFGEVANTHVAALKDINIREASVLVLFAIGVLVLGLY 477 Query: 469 PVPIRD 474 P P+ D Sbjct: 478 PKPLID 483 >gi|33597899|ref|NP_885542.1| NADH dehydrogenase subunit M [Bordetella parapertussis 12822] gi|33602804|ref|NP_890364.1| NADH dehydrogenase subunit M [Bordetella bronchiseptica RB50] gi|33574328|emb|CAE38664.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella parapertussis] gi|33577246|emb|CAE35803.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella bronchiseptica RB50] Length = 500 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 223/490 (45%), Positives = 330/490 (67%), Gaps = 10/490 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTIN----FIFSLFVWSVFDK 57 N P+L++ F+P VF +L L GR G+ G+S I F+ ++ +++ FD Sbjct: 10 NFPWLTLAIFVPI--VFGLLV---LALGRDDRPGLTRGLSLIGALAGFLVTIPLYTGFDA 64 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 G + Q +E WI+ F +YHLG+DGIS+ V+LT F+T + + W+ I +YM Sbjct: 65 GTAQMQFVEKASWIEAFNVNYHLGIDGISLWFVLLTAFITIIVVGAGWQVITSRVAQYMA 124 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 AFL+L +++G F +LD +LFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 125 AFLILSGLMVGVFAALDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSL 184 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A V + S I + +K ++ Q +++A +FA+K+PM+P HTWLP+AH Sbjct: 185 LTLVAFVYLWNVSGGSFDIQTWHQTKLGYTPQVLIFVALLAAFAVKVPMWPVHTWLPDAH 244 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT GSV LA IMLK+G YG +RF LP+ P AS A ++ LSLIA+IY LV++VQ Sbjct: 245 VEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHGLAGLMIALSLIAVIYIGLVAIVQ 304 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+KKL+AYSS+AHMG+VT+G F +G+EGA+ QM+SHG VS A+F C+GV+YDR+H+ Sbjct: 305 DDMKKLVAYSSVAHMGFVTLGFFIFNTAGLEGAIVQMISHGFVSGAMFLCIGVLYDRMHS 364 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I YGG+V+ MPR+ ++F+MAN GLP TSGF+GEFLVIM + + + +L + Sbjct: 365 RRIADYGGVVNVMPRFVTFFVLFSMANSGLPATSGFVGEFLVIMGAVEYNFWIGLLTATA 424 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++L A YSLW+ ++V FG ++V+++ DLS RE ++ +A+ +F GIYP P D Sbjct: 425 LILGASYSLWMLKRVAFGDIGNDRVREMTDLSGREFLILGVMAIAVLFMGIYPKPFTDVM 484 Query: 477 SVPLSSIIEN 486 V + +++++ Sbjct: 485 HVSVEALLQH 494 >gi|255067303|ref|ZP_05319158.1| NADH dehydrogenase, M subunit [Neisseria sicca ATCC 29256] gi|255048454|gb|EET43918.1| NADH dehydrogenase, M subunit [Neisseria sicca ATCC 29256] Length = 498 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/432 (49%), Positives = 308/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L V+L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLRINYSLGVDGISVLFVILNAFITLMVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D LLFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLIMSGLINGAFSARDALLFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML AIV + ++ SI D + + P +Q +++AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAIVYLSYQAGGFSIEDFQNIKQIPLGVQQLLFVAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P AS+YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILPDASRYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA++Y +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFINGQLNDWALKGAVIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFAMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V +KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAALTLIYGASYTLWMYKRVIFGAVGNPHVADMKDINCREFAILAI 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|313672290|ref|YP_004050401.1| NADH dehydrogenase subunit m [Calditerrivibrio nitroreducens DSM 19672] gi|312939046|gb|ADR18238.1| NADH dehydrogenase subunit M [Calditerrivibrio nitroreducens DSM 19672] Length = 498 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 232/490 (47%), Positives = 338/490 (68%), Gaps = 14/490 (2%) Query: 6 LSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LSI+ F P + VF+++FS G+ + + + S I FI ++ + + FDKG + Q Sbjct: 5 LSILIFFPVVAAVFIMIFSK---SGKFAMWSAFIA-SVIEFILTIPLMTNFDKGSAGMQF 60 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E Y+WI Y+LGVDGISIL+V LTTFL+ IL S+ IQ+ +E+ ++ LVLE+ Sbjct: 61 VERYYWIRSLNIDYYLGVDGISILMVFLTTFLSAIAILGSFTYIQKRQKEFYVSMLVLEA 120 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++G F +LD LFYIF+EA LIPM++IIGVWGG RIYAA KFFLYT GS+FM+ AI+ Sbjct: 121 AMVGVFCALDFFLFYIFWEAMLIPMYLIIGVWGGQRRIYAAVKFFLYTLAGSVFMMLAII 180 Query: 184 VMCWE------KKTSSIIDLYAM-SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + ++ + T I+ + AM ++FP Q +++AFF FAIK+PMFPFHTWLP+AH Sbjct: 181 ALYFKYGSMTGEYTFDILKISAMGAQFPLGFQIIVFLAFFFGFAIKVPMFPFHTWLPDAH 240 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APTAGSV LAG++LKMG YG +RF LP+ P+AS F P++ LS+IAIIY LV+MVQ Sbjct: 241 VEAPTAGSVILAGVLLKMGTYGFLRFCLPITPIASIKFVPLVAILSVIAIIYGGLVAMVQ 300 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+KKL+AYSS++HMG+VT+GI++ +SG+EG + QM +HG+++ ALF +G+IY+R HT Sbjct: 301 EDVKKLVAYSSVSHMGFVTLGIYAFNQSGIEGGILQMFNHGIITGALFLLIGLIYERTHT 360 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I YGG+ +P YA V ++FTMA++ LP GFIGEFLV++ F+ T A LA+ G Sbjct: 361 RLIADYGGIAAKVPVYATVFLIFTMASVALPSMGGFIGEFLVLVGAFKAFPTYAGLAALG 420 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 V++SA+Y LW+Y++V F S + L D+++RE + P+ ++ + G+YP Sbjct: 421 VIVSAVYMLWMYQRVFFQ-SVNPNLHHLDDMTVREVFYMIPLIIVVFWTGMYPETFTSYM 479 Query: 477 SVPLSSIIEN 486 + +++E Sbjct: 480 HESVKALVEQ 489 >gi|225024107|ref|ZP_03713299.1| hypothetical protein EIKCOROL_00975 [Eikenella corrodens ATCC 23834] gi|224943132|gb|EEG24341.1| hypothetical protein EIKCOROL_00975 [Eikenella corrodens ATCC 23834] Length = 500 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 221/476 (46%), Positives = 320/476 (67%), Gaps = 13/476 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGRSSFQ 63 LS+ +LP ++L + GC RR+ L + F+ +L +++ FD+ FQ Sbjct: 7 LSLAIWLPIAAGLLVLAT---GCDRRAPLARILAFVGALAGFLVTLPLFTQFDRLSGGFQ 63 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E+Y WI +Y LGVDGIS+L V+L F+T +L+ W+ IQ+ +YM AFL++ Sbjct: 64 FAEFYAWIPALNINYALGVDGISVLFVILNAFITLMVVLAGWEVIQKKVAQYMAAFLIMS 123 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++ GAF++ D +LFYIFFE LIP+++IIGVWGG R+YA+ K FLYT GS+ ML A+ Sbjct: 124 GLINGAFVARDAMLFYIFFEGMLIPLYLIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAL 183 Query: 183 VVMCWEKKTS-SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 V + + S +I D + + P Q ++ AFF SFA+K+PMFP HTWLP+AHV+APT Sbjct: 184 VYLSLQTGGSFAIEDFQNIKQIPLFTQQILFAAFFLSFAVKVPMFPVHTWLPDAHVEAPT 243 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GS+ LA I LK+G YG +RF+LP+ P AS+YFAP I LSLIA+IY +V++ QTD+KK Sbjct: 244 GGSMVLAAITLKLGAYGFLRFILPILPDASRYFAPAIIVLSLIAVIYIGMVALAQTDMKK 303 Query: 302 LIAYSSIAHMGYVTIGIFSGMKS------GVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 L+AYSSI+HMG+VT+G+F ++GA+ QM+SHG VS+A+FFC+GV+YDRLH Sbjct: 304 LVAYSSISHMGFVTLGMFLFTNQVQLQPWALKGAIMQMISHGFVSAAMFFCIGVMYDRLH 363 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 +R+I YGG+V MP++A MM+F MAN GLP TSGF+GEF+VIM + V LA+ Sbjct: 364 SRNIADYGGVVTVMPKFAAFMMLFAMANAGLPATSGFVGEFMVIMGAVNYNLFVGALAAL 423 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 ++L A Y+LW+Y++V+FG V ++KD++ RE ++ +A + G++P P Sbjct: 424 TLILGAAYTLWMYKRVIFGTVTNPHVAEMKDINRREFAILAILAATVLGMGLWPEP 479 >gi|170696387|ref|ZP_02887516.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia graminis C4D1M] gi|170138715|gb|EDT06914.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia graminis C4D1M] Length = 496 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 229/485 (47%), Positives = 338/485 (69%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS+ +LP L G+ V+ S G + VAL S ++FI ++ + + FD + Sbjct: 5 PILSLAIWLPILCGLLVLAIGSDRNPGPARW--VALIGSIVSFIVTIPLITGFDSSSADL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E +WI+ F +YHLGVDGIS+ VVLT +T +++ W+ I +N +Y+ +FL+L Sbjct: 63 QFVEQANWIERFNITYHLGVDGISMWFVVLTALITVIVVIAGWEVITKNVGQYLASFLIL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 +++G F + D +LFY+FFEA+LIPM++IIGVWGG+ R+YAA+KFFLYT GS+ ML A Sbjct: 123 SGIMVGVFSAADGMLFYVFFEATLIPMYIIIGVWGGANRVYAAFKFFLYTLMGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + T + + ++ + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 183 LLYLYVQTGTFDLAT-WQHAQIAMTPQVLLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS + APV+ LSLIA+IY LV+MVQ D+KK Sbjct: 242 GGSVVLAAIMLKLGAYGFLRFSLPIAPDASHFLAPVVITLSLIAVIYIGLVAMVQADMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + GVEGA+ QM+SHG VS A+F +GV+YDR+H+R I Sbjct: 302 LVAYSSIAHMGFVTLGFFIFNQLGVEGAIVQMISHGFVSGAMFLSIGVLYDRMHSRQIAD 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A +M+F+MAN GLPGTSGF+GEF+VI++ Q + +A A+ ++L A Sbjct: 362 YGGVVNVMPKFAAFVMLFSMANCGLPGTSGFVGEFMVILAAVQYNFWIAGGAAVTLILGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y++V FG + V+ L D++ RE M+ +A LT+F G+YP P D V + Sbjct: 422 AYTLWMYKRVYFGAVANDHVKGLFDINRREFFMLAVLAALTLFMGLYPKPFTDVMHVSVE 481 Query: 482 SIIEN 486 +++ + Sbjct: 482 NLLSH 486 >gi|91203932|emb|CAJ71585.1| similar to NADH:ubiquinone oxidoreductase subunit M [Candidatus Kuenenia stuttgartiensis] Length = 525 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/495 (45%), Positives = 345/495 (69%), Gaps = 11/495 (2%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 +P L+++TFLP +GV +IL S+ + +L +S + F+ S+ ++ FD Sbjct: 1 MPILTLITFLPIVGVLLIL--SFDSRHKELIRVTSLLVSVVTFLISVPLYFAFDANTYDM 58 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E WI F SYHLG+DGIS+ +V+LTTF+TP I +SW +++ N +EYMIA LVL Sbjct: 59 QFVEKLRWIPSFGVSYHLGIDGISLFMVLLTTFITPIAIFASW-NVKRNVKEYMIAMLVL 117 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 E+ ++G F+SLD+ LFY+F+E LIPM++IIG+WGG RIYAA KFF+YT GS+FML A Sbjct: 118 ETGMVGVFVSLDVFLFYVFWELMLIPMYLIIGIWGGQRRIYAAIKFFVYTMAGSVFMLLA 177 Query: 182 IVVM------CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 I+ + + T ++++ Y + +++Q+W+++AFF +FAIK+PMFP HTWLP+A Sbjct: 178 IIGLFFLNHKATGEYTFNLLEFYRLD-ISYAVQFWLFLAFFLAFAIKVPMFPLHTWLPDA 236 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+APTAGSV LAG++LKMG YG IRF LPLFP S F PVI +++++ IIY +LV+MV Sbjct: 237 HVEAPTAGSVILAGVLLKMGTYGFIRFCLPLFPEVSHSFIPVISWMAIVGIIYGALVAMV 296 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KKL+AYSS++H+G+V +GIF+ G+EG + QM++HGL + ALF VG++YDR H Sbjct: 297 QDDLKKLVAYSSVSHLGFVMLGIFAFNIQGIEGGITQMINHGLSTGALFLIVGMLYDRRH 356 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR I YGGL +P +A++ M+ T +++GLPG +GF+GEFL+++ VF++ A +A+ Sbjct: 357 TRLISDYGGLTKQIPVFAILFMIVTFSSIGLPGLNGFVGEFLILVGVFKSRILYASIATS 416 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++L+A+Y LW++++V+F E+ + LKD+S RE ++ PI ++ + GIYP Sbjct: 417 GIILAAIYMLWMFQRVMFHNITHEENKTLKDVSSRELAIMIPIVLMIFWIGIYPNSFLRK 476 Query: 476 FSVPLSSIIENYTLK 490 + ++E K Sbjct: 477 MDSSVKHLLEQVERK 491 >gi|110225712|ref|YP_665717.1| NADH dehydrogenase subunit 4 [Mesostigma viride] gi|17222583|gb|AAL36756.1|AF353999_36 NADH dehydrogenase subunit 4 [Mesostigma viride] Length = 484 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 239/491 (48%), Positives = 330/491 (67%), Gaps = 16/491 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV-ALGISTINFIFSLFVWSVFDKGR 59 MN L V P LG +F S++ + + + A S I ++ SLF+W F Sbjct: 1 MNSKLLLFVWLFPILGA---IFLSFIPESKIRWIRLGAFWFSCITWLVSLFLWVGFQNLT 57 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + FQ ++ ID F ++ +GVDGIS+ ++LTTFL P C+L SW +I + Y IAF Sbjct: 58 ADFQFLQK---IDIFPFTFFVGVDGISLFFILLTTFLIPVCLLVSWSNIHHYRKAYFIAF 114 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIF 177 L +ES++I F LD+LLFYIFFE+ LIPMF+IIGVWG ER I AAY+FF+YT FGS+F Sbjct: 115 LAMESLLISVFCLLDLLLFYIFFESVLIPMFLIIGVWGSRERKIRAAYQFFIYTLFGSVF 174 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML I+ + +E T+ + L ++ +Q W+AFF SFA+K+PM P H WLP AHV Sbjct: 175 MLLGILFLHFEIGTTDFLVLQT-TEISEKVQLICWLAFFASFAVKVPMVPVHIWLPEAHV 233 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAGI+LK+G YG +RF + LFP+AS YF P+++ +S+IAI+Y SL ++ Q Sbjct: 234 EAPTAGSVLLAGILLKLGTYGLLRFSITLFPMASIYFTPLVYTMSVIAILYTSLTTLRQI 293 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KK+IAYSS+AHM +VTIG+FS G+EG++F MLSHGLVSSALF CVGV+Y+R TR Sbjct: 294 DLKKIIAYSSVAHMNFVTIGLFSQNVQGIEGSIFLMLSHGLVSSALFLCVGVLYERHKTR 353 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 + YGG VH MP +A+ ++FT+A + PGTS F+GEFL+++ FQN+ + A+LAS G+ Sbjct: 354 LLKYYGGSVHTMPLFAIFFLIFTLAGLSFPGTSSFVGEFLILVGAFQNNISTAILASIGM 413 Query: 418 VLSALYSLWLYRKVVFGVSKCE--KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 VL A YS+WLY +VVFG K K Q DL+ RE ++ P + +F GIYP D Sbjct: 414 VLGAAYSIWLYNRVVFGNLKSHYSKTFQWSDLNRREVAIMTPFVIGIIFMGIYP----DI 469 Query: 476 FSVPLSSIIEN 486 F P+ + + + Sbjct: 470 FLNPMHASVSH 480 >gi|254805700|ref|YP_003083921.1| nuoM; NADH dehydrogenase I chain M [Neisseria meningitidis alpha14] gi|254669242|emb|CBA08106.1| nuoM; NADH dehydrogenase I chain M [Neisseria meningitidis alpha14] Length = 498 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 210/432 (48%), Positives = 311/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA IMLK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAIMLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFTILAV 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|238023179|ref|ZP_04603605.1| hypothetical protein GCWU000324_03105 [Kingella oralis ATCC 51147] gi|237865562|gb|EEP66702.1| hypothetical protein GCWU000324_03105 [Kingella oralis ATCC 51147] Length = 500 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 219/477 (45%), Positives = 326/477 (68%), Gaps = 13/477 (2%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGRSSF 62 LS+ +LP L ++L + G ++ L + + +F+ +L +++ FD+ + Sbjct: 6 LLSLAIWLPILAGVLVLAT---GSDEKAPLARILALVGAAASFVITLPLFTQFDRASGGY 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q E + WI +Y LGVDGIS+L ++L F+T +L+ W+ IQ+ +YM AFL++ Sbjct: 63 QFTELHAWIPALNLNYALGVDGISVLFIILNAFITLMVVLAGWEVIQKRPAQYMAAFLIM 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ++ GAF + D +LFY FFE LIP+++IIG+WGG R+YAA K FLYT GS+ ML A Sbjct: 123 SGLINGAFAAQDAILFYTFFEGMLIPLYLIIGMWGGQRRMYAAMKLFLYTLLGSLLMLVA 182 Query: 182 IVVMCWEKKTS-SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 ++ + ++ S +I DL A+ P +Q ++IAFF SFA+K+PMFP HTWLP+AHV+AP Sbjct: 183 LIYLSYQAGGSFAIADLQAIKNIPLGVQQLLFIAFFLSFAVKVPMFPVHTWLPDAHVEAP 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GS+ LA I LK+G YG +RF+LP+ P AS+YFAPV+ LSLIA++Y LV++VQTD+K Sbjct: 243 TGGSMVLAAITLKVGAYGFLRFILPILPDASRYFAPVVIVLSLIAVVYIGLVALVQTDMK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGV------EGAMFQMLSHGLVSSALFFCVGVIYDRL 354 KL+AYSSI+HMG+VT+G F M++G +GA+ QM+SHG VS+A+F C+GV+YDRL Sbjct: 303 KLVAYSSISHMGFVTLGFFLFMQNGQPESWAFKGAIMQMISHGFVSAAMFMCIGVMYDRL 362 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 HTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+VIM S + +A+ Sbjct: 363 HTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMVIMGATHYSLWIGAIAA 422 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 ++ A Y+LW+Y++V+FG V+++KD++ RE ++ +AV + G+ P P Sbjct: 423 TTLIWGASYTLWMYKRVIFGDILHPAVKEMKDINAREFVILAILAVAVLGMGLLPEP 479 >gi|332968219|gb|EGK07296.1| NADH-quinone oxidoreductase subunit M [Kingella kingae ATCC 23330] Length = 505 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 220/480 (45%), Positives = 328/480 (68%), Gaps = 18/480 (3%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGRSSF 62 LS+ ++P L ++L + G R+ L + + F+ +L +++ FD+ + + Sbjct: 6 LLSLAIWVPILAGVLVLAT---GTDSRAPLARILALIGAVAGFLVTLPLFTHFDRANAGY 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q E + WI +Y LGVDGIS+L V+L F+T +L+ W+ IQ+ +YM AFL++ Sbjct: 63 QFTELHAWIPALNLNYALGVDGISVLFVILNAFITLMVVLAGWEVIQKRPAQYMAAFLIM 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ++ GAF + D +LFY+FFEA LIP+++I+G+WGG R+YAA K FLYT GS+ ML A Sbjct: 123 SGLINGAFAAQDAILFYVFFEAMLIPLYLIVGMWGGPRRVYAAMKLFLYTLLGSLLMLVA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + + +I DL + + P +Q ++IAFF SFA+K+PMFP HTWLP+AHV+APT Sbjct: 183 LIYLGAQANSFAITDLQNLKQIPMGVQQLVFIAFFLSFAVKVPMFPVHTWLPDAHVEAPT 242 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GS+ LA I LK+G YG +RF+LP+ P AS+YFAPVI LSLIA+IY +V++VQTD+KK Sbjct: 243 GGSMVLAAITLKIGAYGFLRFVLPIVPDASRYFAPVIIVLSLIAVIYIGMVALVQTDMKK 302 Query: 302 LIAYSSIAHMGYVTIGI--FSGMKS----------GVEGAMFQMLSHGLVSSALFFCVGV 349 L+AYSSI+HMG+VT+GI FSG+ S G++GA+ QM+SHG VS+A+F C+GV Sbjct: 303 LVAYSSISHMGFVTLGIFLFSGLFSGNPLGELNAWGLKGAIIQMISHGFVSAAMFMCIGV 362 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 +YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+VIM + + + Sbjct: 363 MYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMVIMGAVEVNLWI 422 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 LA+ ++ A Y+LW+Y++ +FG V ++KD++ RE ++ +A + G+YP Sbjct: 423 GALAALTLIYGASYTLWMYKRTIFGEVTNPHVAEMKDINCREFAILAILAAAVLGMGLYP 482 >gi|289665185|ref|ZP_06486766.1| NADH dehydrogenase subunit M [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 491 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 229/477 (48%), Positives = 317/477 (66%), Gaps = 19/477 (3%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 +LP +G +IL R + +L ++ F SL + +D + Q IE + W Sbjct: 3 WLPIIGGALILALRNAETARWA----SLAVAVATFALSLPLLG-YDTANDAMQFIELHAW 57 Query: 71 ID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAF 129 I Y Y+LGVDGI++ L+VLTT +T ++ +W+SI + +Y+ AFL+LE + +G F Sbjct: 58 IPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGIF 117 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML +V + + Sbjct: 118 AATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLYLKG 177 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + + DLYA+ + Q W++ AF +FA+K+PMFP HTWLP+AHV+APTAGSV LA Sbjct: 178 GSFQLADLYAL-QLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAA 236 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I LK+GGYG +RF LP+ P AS FA ++ LSLIA+IY LV++VQ D+KKL+AYSSIA Sbjct: 237 IALKIGGYGFLRFNLPIVPDASHEFAWLVIALSLIAVIYVGLVALVQEDMKKLVAYSSIA 296 Query: 310 HMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 HMG+VT+G F + G++GAM QM+SHG VS A+F C+GV+YDR+HTR Sbjct: 297 HMGFVTLGTFIAFTLVRDYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHTR 356 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ VA A+ + Sbjct: 357 RIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFAAATTL 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 V++A Y+LWLY++V FG V +LKD++ RE ++ A + G+YP P+ D Sbjct: 417 VITAAYTLWLYKRVFFGEVANAHVAELKDINGREAFVLGVFAAGVLALGLYPKPLTD 473 >gi|261378527|ref|ZP_05983100.1| NADH dehydrogenase, M subunit [Neisseria cinerea ATCC 14685] gi|269145077|gb|EEZ71495.1| NADH dehydrogenase, M subunit [Neisseria cinerea ATCC 14685] Length = 498 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 210/432 (48%), Positives = 311/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ S +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSSGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAI 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|289667367|ref|ZP_06488442.1| NADH dehydrogenase subunit M [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 491 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 229/477 (48%), Positives = 317/477 (66%), Gaps = 19/477 (3%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 +LP +G +IL R + +L ++ F SL + +D + Q IE + W Sbjct: 3 WLPIIGGALILALRNAETARWA----SLAVAVATFALSLPLLG-YDTANDAMQFIELHAW 57 Query: 71 ID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAF 129 I Y Y+LGVDGI++ L+VLTT +T ++ +W+SI + +Y+ AFL+LE + +G F Sbjct: 58 IPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGIF 117 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML +V + + Sbjct: 118 AATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLYLKG 177 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + + DLYA+ + Q W++ AF +FA+K+PMFP HTWLP+AHV+APTAGSV LA Sbjct: 178 GSFQLADLYAL-QLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAA 236 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I LK+GGYG +RF LP+ P AS FA ++ LSLIA+IY LV++VQ D+KKL+AYSSIA Sbjct: 237 IALKIGGYGFLRFNLPIVPDASHEFAWLVIALSLIAVIYVGLVALVQEDMKKLVAYSSIA 296 Query: 310 HMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 HMG+VT+G F + G++GAM QM+SHG VS A+F C+GV+YDR+HTR Sbjct: 297 HMGFVTLGTFIAFTLVRDYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHTR 356 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ VA A+ + Sbjct: 357 RIADYGGVVNVMPWFATFSMLFFMANSGLPGTSGFVGEFMVILASFQKHPLVAFAAATTL 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 V++A Y+LWLY++V FG V +LKD++ RE ++ A + G+YP P+ D Sbjct: 417 VITAAYTLWLYKRVFFGEVANAHVAELKDINGREAFVLGVFAAGVLALGLYPKPLTD 473 >gi|294624666|ref|ZP_06703336.1| NADH dehydrogenase subunit M [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601022|gb|EFF45089.1| NADH dehydrogenase subunit M [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 477 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 223/451 (49%), Positives = 307/451 (68%), Gaps = 15/451 (3%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFL 95 +L ++ F SL + +D + Q IE + WI Y Y+LGVDGI++ L+VLTT + Sbjct: 11 SLAVAVATFALSLPLLG-YDTANDAMQFIELHAWIPAYNIGYNLGVDGIAVALIVLTTLV 69 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 T ++ +W+SI + +Y+ AFL+LE + +G F + D +LFY+FFEA LIPMF+IIGVW Sbjct: 70 TVLALIGAWRSIDKRVNQYVAAFLILEGVTVGIFAATDAMLFYVFFEAMLIPMFLIIGVW 129 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF 215 GG RIYAA KFFLYTF GS+ ML +V + + + + DLYA+ + Q W++ AF Sbjct: 130 GGPRRIYAAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLYAL-QLTAKEQTWIFFAF 188 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 +FA+K+PMFP HTWLP+AHV+APTAGSV LA I LK+GGYG +RF LP+ P AS FA Sbjct: 189 LIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFA 248 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF------------SGMK 323 ++ LSLIA+IY LV++VQ D+KKL+AYSSIAHMG+VT+G F + Sbjct: 249 WLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFIAFTLVREYGSTDAAR 308 Query: 324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMAN 383 G++GAM QM+SHG VS A+F C+GV+YDR+HTR I YGG+V+ MP +A M+F MAN Sbjct: 309 LGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHTRRIADYGGVVNVMPWFATFSMLFFMAN 368 Query: 384 MGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ 443 GLPGTSGF+GEF+VI++ FQ VA A+ +V++A Y+LWLY++V FG V + Sbjct: 369 AGLPGTSGFVGEFMVILASFQKHPLVAFAAATTLVITAAYTLWLYKRVFFGEVANAHVAE 428 Query: 444 LKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 LKD++ RE ++ A + G+YP P+ D Sbjct: 429 LKDINGREAFVLGVFAAGVLALGLYPKPLTD 459 >gi|325921399|ref|ZP_08183256.1| NADH dehydrogenase subunit M [Xanthomonas gardneri ATCC 19865] gi|325548157|gb|EGD19154.1| NADH dehydrogenase subunit M [Xanthomonas gardneri ATCC 19865] Length = 491 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/477 (47%), Positives = 318/477 (66%), Gaps = 19/477 (3%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 +LP +G +IL R + +L ++ F+ SL + +D + Q +E + W Sbjct: 3 WLPIIGGALILALRNAETARWA----SLAVAVATFVLSLPLLG-YDTANDALQFVELHAW 57 Query: 71 ID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAF 129 I Y Y+LGVDGI++ L+VLTT +T ++ +W+SI + +Y+ AFL+LE + +G F Sbjct: 58 IPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTLGIF 117 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML +V + + Sbjct: 118 AATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLYLKG 177 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + + DLYA+ + Q W++ AF +FA+K+PMFP HTWLP+AHV+APTAGSV LA Sbjct: 178 GSFQLADLYAL-QLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAA 236 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I LK+GGYG +RF LP+ P AS FA ++ LSLIA+IY LV++VQ D+KKL+AYSSIA Sbjct: 237 IALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIA 296 Query: 310 HMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 HMG+VT+G F + G++GAM QM+SHG VS A+F C+GV+YDR+HTR Sbjct: 297 HMGFVTLGTFIAFTLVRDYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHTR 356 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ +A A+ + Sbjct: 357 RIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILASFQKHPLIAFGAATTL 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 V++A Y+LWLY++V FG V +LKD++ RE ++ A + G+YP P+ D Sbjct: 417 VITAAYTLWLYKRVFFGEVANAHVAELKDINGREAFVLGVFAAGVLALGLYPKPLTD 473 >gi|317402000|gb|EFV82600.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54] Length = 495 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 221/488 (45%), Positives = 332/488 (68%), Gaps = 10/488 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTIN----FIFSLFVWSVFDKGR 59 P+L++ F+P VF +L L GR G+ G+S I F+ ++ +++ FD Sbjct: 7 PWLTLAIFVPI--VFGLLV---LAVGRDDRPGLTRGLSLIGSIAGFLVTIPLYTGFDSKT 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 ++ Q +E WI+ F +YHLGVDGIS+ V+LT F+T +L+ W+ I +YM AF Sbjct: 62 AAMQFVEKTSWIEAFNVNYHLGVDGISLWFVLLTAFITIIVVLAGWEVITSRVSQYMAAF 121 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L +++G F +LD +LFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 122 LILSGLMVGVFCALDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLMGSLLT 181 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A V + S I + +K ++ Q +++A +FA+K+PM+P HTWLP+AHV+ Sbjct: 182 LVAFVYLWNASGGSFDILTWQQTKLGYTPQILIFVALLAAFAVKVPMWPVHTWLPDAHVE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GS+ LA IMLK+G YG +RF LP+ P AS A ++ LSLIA+IY LV++VQ D Sbjct: 242 APTGGSIVLAAIMLKLGAYGFLRFSLPIAPDASHSLAGLMITLSLIAVIYIGLVAIVQDD 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSS+AHMG+VT+G F +GVEGA+ QM+SHG VS A+F C+GV+YDR+H+R Sbjct: 302 MKKLVAYSSVAHMGFVTLGFFIFNTAGVEGAIVQMISHGFVSGAMFMCIGVLYDRMHSRR 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+V+ MPR+A ++F+MAN GLP TSGF+GEF+VIM +++ + +LA+ ++ Sbjct: 362 IADYGGVVNVMPRFATFFILFSMANSGLPATSGFVGEFMVIMGAVEHNFWIGLLAATALI 421 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A YSLW+ ++VV G + V++L D++ RE ++ +A+ ++ GI+P P D V Sbjct: 422 LGASYSLWMVKRVVLGDVANDHVRELTDINRREFVILGVMAIAVLYMGIHPKPFTDVMHV 481 Query: 479 PLSSIIEN 486 + +++++ Sbjct: 482 SVEALLQH 489 >gi|241760716|ref|ZP_04758808.1| NADH dehydrogenase subunit M [Neisseria flavescens SK114] gi|241318897|gb|EER55423.1| NADH dehydrogenase subunit M [Neisseria flavescens SK114] Length = 498 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 311/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTQFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q +++AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFVAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAI 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|188577684|ref|YP_001914613.1| NADH dehydrogenase subunit M [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522136|gb|ACD60081.1| NADH-ubiquinone oxidoreductase Nqo13 subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 491 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 229/477 (48%), Positives = 316/477 (66%), Gaps = 19/477 (3%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 +LP +G +IL R + +L ++ F SL + +D + Q IE + W Sbjct: 3 WLPIIGGALILALRNAETARWA----SLAVAVATFALSLPLLG-YDTANDAMQFIELHAW 57 Query: 71 ID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAF 129 I Y Y+LGVDGI++ L+VLTT +T ++ +W+SI + +Y+ AFL+LE + +G F Sbjct: 58 IPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGIF 117 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML +V + + Sbjct: 118 AATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLYLKG 177 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + + DLYA+ + Q W++ AF +FA+K+PMFP HTWLP+AHV+APTAGSV LA Sbjct: 178 GSFQLADLYAL-QLSAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAA 236 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I LK+GGYG +RF LP+ P AS FA ++ LSLIA+IY LV++VQ D+KKL+AYSSIA Sbjct: 237 IALKIGGYGFLRFNLPIVPDASHEFAWLVIALSLIAVIYVGLVALVQDDMKKLVAYSSIA 296 Query: 310 HMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 HMG+VT+G F + G++GAM QM+SHG VS A+F C+GV+YDR+HTR Sbjct: 297 HMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHTR 356 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ VA A + Sbjct: 357 RIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFAAGTTL 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 V++A Y+LWLY++V FG V +LKD++ RE ++ A + G+YP P+ D Sbjct: 417 VITAAYTLWLYKRVFFGEVANAHVAELKDINGREAFVLGVFAAGVLAMGLYPKPLTD 473 >gi|163855999|ref|YP_001630297.1| NADH dehydrogenase subunit M [Bordetella petrii DSM 12804] gi|163259727|emb|CAP42028.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella petrii] Length = 500 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 219/488 (44%), Positives = 330/488 (67%), Gaps = 10/488 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTIN----FIFSLFVWSVFDKGR 59 P+L++ F+P VF +L L GR G+ G+S + F+ ++ +++ FD Sbjct: 12 PWLTLAIFVPI--VFGLLV---LALGRDDRPGLTRGLSLVGALAGFVVTIPLYTGFDAST 66 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 ++ Q +E WI+ F +YHLG+DGIS+ V+LT F+T +L+ W+ I +YM AF Sbjct: 67 AAMQFVEKASWIEAFNVNYHLGIDGISLWFVLLTAFITIIVVLAGWEVITSRVAQYMAAF 126 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L +++G F +LD LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 127 LILSGLMVGVFAALDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLT 186 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A + + S I + K ++ Q +++A +FA+K+PM+P HTWLP+AHV+ Sbjct: 187 LVAFIYLWNASGGSFDIQTWHQVKLGYTPQVLIFVALLAAFAVKVPMWPVHTWLPDAHVE 246 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV LA IMLK+G YG +RF LP+ P AS A ++ LSLIA+IY LV++VQ D Sbjct: 247 APTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHSLAGLMIALSLIAVIYIGLVAIVQDD 306 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSS+AHMG+VT+G F +GVEGA+ QM+SHG VS A+FFC+GV+YDR+H+R Sbjct: 307 MKKLVAYSSVAHMGFVTLGFFIFNTAGVEGAIVQMISHGFVSGAMFFCIGVLYDRMHSRR 366 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+++ MPR+ ++F+MAN GLP TSGF+GEF+VIM +++ + +LA+ ++ Sbjct: 367 IADYGGVINVMPRFVTFFVLFSMANSGLPATSGFVGEFMVIMGAVEHNFWIGLLAATALI 426 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A YSLW+ ++V FG + V++L D++ RE ++ +A+ ++ GIYP P D Sbjct: 427 LGASYSLWMVKRVAFGDIANDHVRELSDVNRREFLILGVMAIAVLYMGIYPKPFTDVMHA 486 Query: 479 PLSSIIEN 486 + +++++ Sbjct: 487 SVQALLQH 494 >gi|309379788|emb|CBX21564.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 498 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/432 (48%), Positives = 311/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q +++AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFVAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIVPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLDDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG + V ++KD++ RE ++ Sbjct: 404 VIMGTVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIRNPHVAEMKDINCREFAILAV 463 Query: 458 IAVLTVFFGIYP 469 +A+ + G+YP Sbjct: 464 LAIAVLGMGLYP 475 >gi|296040775|gb|ADG85355.1| NADH dehydrogenase subunit 4 [Silene noctiflora] Length = 495 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/484 (48%), Positives = 329/484 (67%), Gaps = 7/484 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGR-RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS + P LG ++LF L R R + L S I F++S+ +W FD + FQ Sbjct: 12 LSGLLLCPVLGSMILLF---LPNSRIRLIRLIGLSASLITFLYSILLWIQFDPSTAKFQF 68 Query: 65 IEYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E W+ Y +++LG+DGIS+ V+LTTFL P CIL W +I+ +EY+IAFL+ E Sbjct: 69 VESIRWLPYENINFYLGIDGISLFFVLLTTFLIPICILVGWANIRSYGKEYIIAFLICEF 128 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAI 182 ++I F LD+LLFY+FFE+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML I Sbjct: 129 LMIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLGI 188 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 +++ E T+ + L + ++F Q ++W+AFF SFA+K+PM P H WLP AHV+APTA Sbjct: 189 LLILLETGTTDLQILLS-TEFSERRQLFLWLAFFASFAVKVPMVPVHIWLPEAHVEAPTA 247 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LAGI+LK+G YG +RF +P+FP A+ F P I+ LS IAIIY SL ++ Q D+KK+ Sbjct: 248 GSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKI 307 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHM +VTIG+FS G+ G++ MLSHGLVSSALF CVGV+YDR TR + Y Sbjct: 308 IAYSSVAHMNFVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLLRYY 367 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGLV MP ++ + + FT+ANM LPGTS F+GEFL+++ FQ ++ VA LA+ G++L A Sbjct: 368 GGLVSTMPNFSTIFLFFTLANMSLPGTSSFVGEFLILVGAFQRNSLVATLAAIGMILGAA 427 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 YSLWLY +VV G K + + + D++ RE + P + ++ G+YP D +S+ Sbjct: 428 YSLWLYNRVVSGNLKPDFIHKFSDINRRECFIFIPFLLGVLWMGVYPKVFLDCMHTSVSN 487 Query: 483 IIEN 486 ++++ Sbjct: 488 LVQH 491 >gi|261379566|ref|ZP_05984139.1| NADH dehydrogenase, M subunit [Neisseria subflava NJ9703] gi|284798040|gb|EFC53387.1| NADH dehydrogenase, M subunit [Neisseria subflava NJ9703] Length = 498 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 311/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q +++AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLHYQTGSFSIVDFQNIKQIPLGVQQLLFVAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAI 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|325143097|gb|EGC65444.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis 961-5945] gi|325143167|gb|EGC65513.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis 961-5945] Length = 498 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 310/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q +++AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFVAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F G ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILVI 463 Query: 458 IAVLTVFFGIYP 469 +AV+ + G+YP Sbjct: 464 LAVVVLGMGLYP 475 >gi|33592019|ref|NP_879663.1| NADH dehydrogenase subunit M [Bordetella pertussis Tohama I] gi|33571663|emb|CAE41156.1| NADH-ubiquinone oxidoreductase, chain M [Bordetella pertussis Tohama I] gi|332381435|gb|AEE66282.1| NADH dehydrogenase subunit M [Bordetella pertussis CS] Length = 499 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 222/490 (45%), Positives = 330/490 (67%), Gaps = 10/490 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTIN----FIFSLFVWSVFDK 57 N P+L++ F+P VF +L L GR G+ G+S I F+ ++ +++ F+ Sbjct: 9 NFPWLTLAIFVPI--VFGLLV---LALGRDDRPGLTRGLSLIGALAGFLVTIPLYTGFEA 63 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 G + Q +E WI+ F +YHLG+DGIS+ V+LT F+T + + W+ I +YM Sbjct: 64 GTAQMQFVEKASWIEAFNVNYHLGIDGISLWFVLLTAFITIIVVGAGWQVITSRVAQYMA 123 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 AFL+L +++G F +LD +LFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 124 AFLILSGLMVGVFAALDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSL 183 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A V + S I + +K ++ Q +++A +FA+K+PM+P HTWLP+AH Sbjct: 184 LTLVAFVYLWNVSGGSFDIQTWHQTKLGYTPQVLIFVALLAAFAVKVPMWPVHTWLPDAH 243 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT GSV LA IMLK+G YG +RF LP+ P AS A ++ LSLIA+IY LV++VQ Sbjct: 244 VEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHGLAGLMIALSLIAVIYIGLVAIVQ 303 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+KKL+AYSS+AHMG+VT+G F +G+EGA+ QM+SHG VS A+F C+GV+YDR+H+ Sbjct: 304 DDMKKLVAYSSVAHMGFVTLGFFIFNTAGLEGAIVQMISHGFVSGAMFLCIGVLYDRMHS 363 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I YGG+V+ MPR+ ++F+MAN GLP TSGF+GEFLVIM + + + +L + Sbjct: 364 RRIADYGGVVNVMPRFVTFFVLFSMANSGLPATSGFVGEFLVIMGAVEYNFWIGLLTATA 423 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++L A YSLW+ ++V FG ++V+++ DLS RE ++ +A+ +F GIYP P D Sbjct: 424 LILGASYSLWMLKRVAFGDIGNDRVREMTDLSGREFLILGVMAIAVLFMGIYPKPFTDVM 483 Query: 477 SVPLSSIIEN 486 V + +++++ Sbjct: 484 HVSVEALLQH 493 >gi|325135061|gb|EGC57689.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis M13399] Length = 498 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 216/472 (45%), Positives = 326/472 (69%), Gaps = 11/472 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGRSSFQ 63 LS+ ++P ++L + G R+ F L + F+ +L +++ FD+ +Q Sbjct: 7 LSLAIWIPIAAGVLVLAT---GSDSRAPFARVLAFMGALAGFLVTLPLFTGFDRLSGGYQ 63 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E++ WI +Y LGVDGIS+L ++L F+T +L+ W+ IQ+ +YM AFL++ Sbjct: 64 FTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLAGWEVIQKRPAQYMAAFLIMS 123 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+YA+ K FLYT GS+ ML A+ Sbjct: 124 GLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAM 183 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 V + ++ + SI+D + + P +Q +++AFF SFA+K+PMFP HTWLP+AHV+APT Sbjct: 184 VYLYYQTGSFSIVDFQNIEQIPLGVQQLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTG 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LSLIA+IY +V++VQTD+KKL Sbjct: 244 GSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKL 303 Query: 303 IAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 +AYSSI+HMG+VT+G+F G ++GA+ QM+SHG VS+A+F C+GV+YDRLHTR Sbjct: 304 VAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISHGFVSAAMFMCIGVMYDRLHTR 363 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+VIM + + V LA+ + Sbjct: 364 NIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTL 423 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + A Y+LW+Y++V++G V ++KD++ RE ++ +AV+ + G+YP Sbjct: 424 IYGASYTLWMYKRVIYGAIHNPHVAEMKDINCREFAILAILAVVVLGMGLYP 475 >gi|261364364|ref|ZP_05977247.1| NADH dehydrogenase, M subunit [Neisseria mucosa ATCC 25996] gi|288567630|gb|EFC89190.1| NADH dehydrogenase, M subunit [Neisseria mucosa ATCC 25996] Length = 498 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 211/432 (48%), Positives = 308/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L V+L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLRINYSLGVDGISVLFVILNAFITLMVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D LLFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLIMSGLINGAFSARDALLFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML AIV + ++ +I D + + P +Q +++AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAIVYLSYQVGGFAIEDFQNIKQIPLGVQQLLFVAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P AS+YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILPDASRYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA++Y +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAVIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFAMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V +KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAALTLIYGASYTLWMYKRVIFGAVGNPHVADMKDINCREFAILAI 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|325197542|gb|ADY92998.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis G2136] Length = 498 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 310/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q +++AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFVAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F G ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAI 463 Query: 458 IAVLTVFFGIYP 469 +AV+ + G+YP Sbjct: 464 LAVVVLGMGLYP 475 >gi|298370363|ref|ZP_06981679.1| NADH dehydrogenase (ubiquinone), M subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281823|gb|EFI23312.1| NADH dehydrogenase (ubiquinone), M subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 498 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 211/432 (48%), Positives = 307/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L V+L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLRINYSLGVDGISVLFVILNAFITLMVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D LLFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLIMSGLINGAFSARDALLFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML AIV + ++ SI D + + P +Q +++AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAIVYLSYQAGGFSIEDFQNIKQIPLGVQQLLFVAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P AS+YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPILPDASRYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA++Y +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVVYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFINGQLNDWALKGAVIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+ + MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVANVMPKFAAFMMLFAMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V +KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAALTLIYGASYTLWMYKRVIFGAVGNPHVADMKDINCREFAILAI 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|307101734|ref|YP_003875493.1| NADH dehydrogenase subunit 4 [Silene latifolia] gi|296040773|gb|ADG85354.1| NADH dehydrogenase subunit 4 [Silene latifolia] gi|301338029|gb|ADK73321.1| NADH dehydrogenase subunit 4 [Silene latifolia] Length = 495 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 236/483 (48%), Positives = 325/483 (67%), Gaps = 5/483 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + P LG ++LF R + L S I F++SL +W FD + FQ + Sbjct: 12 LSGLILCPVLGSIILLFIP--NSRIRLIRLIGLCASLITFLYSLVLWIQFDPSTAKFQFV 69 Query: 66 EYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E W+ Y +++LG+DGIS+ V+LTTFL P CIL W ++ +EY+IAFL+ E + Sbjct: 70 ESLRWLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFL 129 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIV 183 +I F LD+LLFY+FFE+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+ Sbjct: 130 MIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAIL 189 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 ++ + T+ + + ++F Q ++WIAFF SFA+K+PM P H WLP AHV+APTAG Sbjct: 190 LILLQTGTTDL-QILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAG 248 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI+LK+G YG +RF +P+FP A+ F P I+ LS IAIIY SL ++ Q D+KK+I Sbjct: 249 SVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKII 308 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM +VTIG+FS G+ G++ MLSHGLVSSALF CVGV+YDR TR + YG Sbjct: 309 AYSSVAHMNFVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYG 368 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GLV MP ++ + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A Y Sbjct: 369 GLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAY 428 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLWLY +VV G K + + + DL+ RE + P V V+ G+YP D +S++ Sbjct: 429 SLWLYNRVVSGNLKPDFLHKFSDLNGREIFIFIPFLVGVVWMGVYPKVFLDCMHTSVSNL 488 Query: 484 IEN 486 +++ Sbjct: 489 VQH 491 >gi|218768959|ref|YP_002343471.1| NADH dehydrogenase subunit M [Neisseria meningitidis Z2491] gi|121052967|emb|CAM09321.1| NADH dehydrogenase chain M [Neisseria meningitidis Z2491] gi|319411257|emb|CBY91664.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M; NDH-1, chain M) [Neisseria meningitidis WUE 2594] Length = 498 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 310/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNSHVAEMKDINCREFAILAV 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|325129052|gb|EGC51902.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis N1568] Length = 498 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 310/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAV 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|261400486|ref|ZP_05986611.1| NADH dehydrogenase, M subunit [Neisseria lactamica ATCC 23970] gi|269209745|gb|EEZ76200.1| NADH dehydrogenase, M subunit [Neisseria lactamica ATCC 23970] Length = 498 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/432 (48%), Positives = 311/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFAGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG + V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIRNPHVAEMKDINCREFAILAV 463 Query: 458 IAVLTVFFGIYP 469 +A+ + G+YP Sbjct: 464 LAIAVLGMGLYP 475 >gi|304389084|ref|ZP_07371128.1| NADH-quinone oxidoreductase subunit M [Neisseria meningitidis ATCC 13091] gi|304336957|gb|EFM03147.1| NADH-quinone oxidoreductase subunit M [Neisseria meningitidis ATCC 13091] Length = 498 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 210/432 (48%), Positives = 310/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L V+L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFVILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFTILAV 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|311104670|ref|YP_003977523.1| NADH-quinone oxidoreductase subunit M [Achromobacter xylosoxidans A8] gi|310759359|gb|ADP14808.1| NADH-quinone oxidoreductase subunit M [Achromobacter xylosoxidans A8] Length = 500 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 220/488 (45%), Positives = 331/488 (67%), Gaps = 10/488 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTIN----FIFSLFVWSVFDKGR 59 P+L++ F+P VF +L L GR G+ G+S + F+ ++ +++ FD Sbjct: 12 PWLTLAIFVPI--VFGLLV---LAVGRDDRPGLTRGLSLVGAIAGFLVTIPLYTGFDSTT 66 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q +E WI+ F +YHLG+DGIS+ V+LT F+T +L+ W+ I +YM AF Sbjct: 67 AKMQFVEKTSWIEAFNVNYHLGIDGISMWFVLLTAFITIIVVLAGWEVITSRVAQYMAAF 126 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L +++G F +LD +LFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 127 LILSGLMVGVFCALDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLMGSLLT 186 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A V + S I + +K ++ Q +++A +FA+K+PM+P HTWLP+AHV+ Sbjct: 187 LVAFVYLWNVSGGSFDILTWQQTKLGYTPQILIFVALLAAFAVKVPMWPVHTWLPDAHVE 246 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GS+ LA IMLK+G YG +RF LP+ P AS A ++ LSLIA+IY LV++VQ D Sbjct: 247 APTGGSIVLAAIMLKLGAYGFLRFSLPIAPDASHSLAGMMITLSLIAVIYIGLVAIVQDD 306 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSS+AHMG+VT+G F +GVEGA+ QM+SHG VS A+F C+GV+YDR+H+R Sbjct: 307 MKKLVAYSSVAHMGFVTLGFFIFNTAGVEGAIVQMISHGFVSGAMFMCIGVLYDRMHSRR 366 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+V+ MPR+A ++F+MAN GLP TSGF+GEF+VIM +++ + +LA+ ++ Sbjct: 367 IADYGGVVNVMPRFATFFILFSMANSGLPATSGFVGEFMVIMGAVEHNFWIGLLAATALI 426 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A YSLW+ ++VV G + V++L D++ RE ++ +A+ ++ GIYP P D V Sbjct: 427 LGASYSLWMVKRVVLGDVANDHVRELTDINRREFVILGVMAIAVLYMGIYPKPFTDVMHV 486 Query: 479 PLSSIIEN 486 + +++++ Sbjct: 487 SVEALLQH 494 >gi|121634128|ref|YP_974373.1| NADH dehydrogenase subunit M [Neisseria meningitidis FAM18] gi|120865834|emb|CAM09566.1| NADH dehydrogenase chain M [Neisseria meningitidis FAM18] Length = 498 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 311/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAI 463 Query: 458 IAVLTVFFGIYP 469 +AV+ + G+YP Sbjct: 464 LAVVVLGMGLYP 475 >gi|162279932|ref|NP_064080.2| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. vulgaris] gi|323435100|ref|YP_004222318.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. maritima] gi|20429167|dbj|BAB91330.1| NADH dehydrogenase subunit 4 [Beta vulgaris] gi|148491436|dbj|BAA99473.2| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. vulgaris] gi|317905655|emb|CBJ14051.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. maritima] gi|319439833|emb|CBJ17542.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. maritima] gi|320148081|emb|CBJ20743.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. maritima] Length = 495 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 236/483 (48%), Positives = 324/483 (67%), Gaps = 5/483 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + P LG ++LF R + L S I F++SL +W FD + FQ + Sbjct: 12 LSGLILCPVLGSIILLFIP--NSRIRLIRLIGLCASLITFLYSLVLWIQFDPSTAKFQFV 69 Query: 66 EYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E W+ Y ++LG+DGIS+ V+LTTFL P CIL W ++ +EY+IAFL+ E + Sbjct: 70 ESLRWLPYENIHFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFL 129 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIV 183 +I F LD+LLFY+FFE+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+ Sbjct: 130 MIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAIL 189 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 ++ + T+ + + ++F Q ++WIAFF SFA+K+PM P H WLP AHV+APTAG Sbjct: 190 LILLQTGTTDL-QILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAG 248 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI+LK+G YG +RF +P+FP A+ F P I+ LS IAIIY SL ++ Q D+KK+I Sbjct: 249 SVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKII 308 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM +VTIG+FS G+ G++ MLSHGLVSSALF CVGV+YDR TR + YG Sbjct: 309 AYSSVAHMNFVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYG 368 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GLV MP ++ + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A Y Sbjct: 369 GLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAY 428 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLWLY +VV G K + + + DL+ RE + P V V+ G+YP D +S++ Sbjct: 429 SLWLYNRVVSGNLKPDFLHKFSDLNGREVFIFIPFLVGVVWMGVYPKVFLDCMHTSVSNL 488 Query: 484 IEN 486 +++ Sbjct: 489 VQH 491 >gi|294670445|ref|ZP_06735327.1| hypothetical protein NEIELOOT_02164 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307909|gb|EFE49152.1| hypothetical protein NEIELOOT_02164 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 500 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 219/476 (46%), Positives = 320/476 (67%), Gaps = 13/476 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGRSSFQ 63 LS+ +LP ++L + GC RR+ L + F+ +L +++ FD+ FQ Sbjct: 7 LSLAIWLPIAAGLLVLAT---GCDRRAPLARILAFVGALAGFLVTLPLFTQFDRLSGGFQ 63 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E+Y W+ +Y LGVDGIS+L V+L F+T +L+ W+ IQ+ +YM AFL++ Sbjct: 64 FAEFYAWVPALNINYALGVDGISVLFVILNAFITLMVVLAGWEVIQKKVAQYMAAFLIMS 123 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++ GAF + D +LFYIFFE LIP+++IIGVWGG R+YA+ K FLYT GS+ ML A+ Sbjct: 124 GLINGAFAARDAMLFYIFFEGMLIPLYLIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAM 183 Query: 183 VVMCWEKKTS-SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 V + + S +I D + + P IQ +++AFF SFA+K+ M+P HTWLP+AHV+APT Sbjct: 184 VYLSHQAGGSFAIADFQNLKQIPLGIQQILFVAFFLSFAVKMSMWPVHTWLPDAHVEAPT 243 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GS+ LA I LK+G YG +RF+LP+ P AS+YFAP I LSLIA+IY +V++ QTD+KK Sbjct: 244 GGSMALAAITLKLGAYGFLRFILPILPDASRYFAPAIIVLSLIAVIYIGMVALAQTDMKK 303 Query: 302 LIAYSSIAHMGYVTIGIFSGMKS------GVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 L+AYSSI+HMG+VT+G+F ++GA+ QM+SHG VS+A+FFC+GV+YDRLH Sbjct: 304 LVAYSSISHMGFVTLGMFLFTNQVQLQPWALKGAIMQMISHGFVSAAMFFCIGVMYDRLH 363 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 +R+I YGG+V MP++A MM+F MAN GLP TSGF+GEF+VIM + V LA+ Sbjct: 364 SRNIADYGGVVTVMPKFAAFMMLFAMANAGLPATSGFVGEFMVIMGAVNYNLFVGALAAL 423 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 ++L A Y+LW+Y++V+FG V ++KD++ RE ++ +A + G++P P Sbjct: 424 TLILGAAYTLWMYKRVIFGAVNNPHVAEMKDINRREFAILAILAATVLGMGLWPEP 479 >gi|319638831|ref|ZP_07993589.1| NADH dehydrogenase chain M [Neisseria mucosa C102] gi|317399735|gb|EFV80398.1| NADH dehydrogenase chain M [Neisseria mucosa C102] Length = 498 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 310/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIVQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAI 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|187477553|ref|YP_785577.1| NADH dehydrogenase subunit M [Bordetella avium 197N] gi|115422139|emb|CAJ48663.1| NADH dehydrogenase I chain M [Bordetella avium 197N] Length = 500 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 225/490 (45%), Positives = 331/490 (67%), Gaps = 10/490 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTIN----FIFSLFVWSVFDK 57 N P+L++ F+P VF +L L GR + G+S I F+ ++ +++ FDK Sbjct: 10 NFPWLTLAIFVPI--VFGLLV---LALGRDDRPCLTRGLSLIGAVAGFLVTIPLYTGFDK 64 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++ Q +E WI+ F +YHLGVDGIS+ V+LT F+T + + W+ I +YM Sbjct: 65 TTAAMQFVEKASWIESFNVNYHLGVDGISVWFVLLTAFITIIVVAAGWEVITNRVPQYMA 124 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 AFL+L +++G F +LD LLFY+FFEA+LIPM++I+GVWGG R+YAA+KFFLYT GS+ Sbjct: 125 AFLILSGLMVGVFSALDGLLFYVFFEATLIPMYIIVGVWGGPNRVYAAFKFFLYTLMGSL 184 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A V + S I + +K ++ Q ++IA +FA+K+PM+P HTWLP+AH Sbjct: 185 LTLVAFVYLWNVSGGSFDILTWQQTKLGYTPQILIFIALLAAFAVKVPMWPVHTWLPDAH 244 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT GSV LA IMLK+G YG +RF LP+ P AS + ++ LSLIA+IY LV++VQ Sbjct: 245 VEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHSLSGLMIALSLIAVIYIGLVAIVQ 304 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+KKL+AYSS+AHMG+VT+G F +GVEGA+ QM+SHG VS A+F C+GV+YDR+H+ Sbjct: 305 EDMKKLVAYSSVAHMGFVTLGFFIFNTAGVEGAIVQMISHGFVSGAMFLCIGVLYDRMHS 364 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I YGG+V+ MPR+A ++F+MAN GLP TSGF+GEF+VIM +++ V +LA+ Sbjct: 365 RRIADYGGVVNVMPRFATFFVLFSMANSGLPATSGFVGEFMVIMGAVEHNFWVGLLAATA 424 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++L A YSLW+ ++VVFG V ++ DL+ RE ++ +A+ ++ GIYP P D Sbjct: 425 LILGASYSLWMVKRVVFGDITNPHVSEMSDLNRREFWILGVMAIAVLYMGIYPKPFTDVM 484 Query: 477 SVPLSSIIEN 486 V + +++++ Sbjct: 485 HVSVEALLQH 494 >gi|254491642|ref|ZP_05104821.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Methylophaga thiooxidans DMS010] gi|224463120|gb|EEF79390.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Methylophaga thiooxydans DMS010] Length = 503 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 225/499 (45%), Positives = 332/499 (66%), Gaps = 19/499 (3%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 +LP LS+V +LP LG V IL +G R AL I+T+ + S ++ FD Sbjct: 4 DLPLLSLVIWLPILGGVIAIL----IGDERPILKPFALAIATLTMLLSFGLYIGFDNTTY 59 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q +E + WI+ F +YHLGVDG S+ L++LTT T ++++W+ I++ +Y+ AFL Sbjct: 60 QMQFVERHSWIETFAINYHLGVDGFSMPLIILTTISTLLVVVAAWEVIKDRLSQYLAAFL 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++E +++ F +LD +LFY+FFEA LIP+F++IG+WGG R+YA KFFLYTFFGS+F+L Sbjct: 120 IMEGLMLAVFSALDAILFYVFFEAMLIPLFLVIGIWGGPNRVYATIKFFLYTFFGSVFLL 179 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ + + +I+D + + Q W+ +AF +FA+K+PM+P HTWLP+AHV+A Sbjct: 180 VALLYLRHVSDSFAILDFHNVG-LSLKEQTWLLLAFLIAFAVKVPMWPVHTWLPDAHVEA 238 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT GSV LA I LK+GGYG +RF LP+ P AS I LSLIAI+Y V++ Q+D+ Sbjct: 239 PTGGSVILAAITLKIGGYGFLRFALPIAPDASLVLDWFIISLSLIAIVYIGFVALAQSDL 298 Query: 300 KKLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCV 347 KKLIAYSSIAHMG+VT+G+F +G +EGAM QM+SHG +S+A+F V Sbjct: 299 KKLIAYSSIAHMGFVTLGLFIIFRIFANASTGTGAVLAIEGAMVQMISHGFISAAMFLAV 358 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 GV+YDR+HTR+I AYGG+V+ MP +A + F MAN GLPGTSGF+GEF+VI++ FQ + Sbjct: 359 GVLYDRMHTREISAYGGVVNTMPVFAAFAVFFAMANAGLPGTSGFVGEFMVILAAFQANF 418 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 A LA+ ++L A Y+LW+ ++V +G ++V LKD++ RE M+ +AV+ +F G+ Sbjct: 419 WFAFLAATTLILGAAYTLWMVKRVFYGEVANQEVAALKDINRREFAMLASLAVIVLFIGV 478 Query: 468 YPVPIRDTFSVPLSSIIEN 486 +P P+ D + ++ Sbjct: 479 WPDPLLDVMHASVEHLLTQ 497 >gi|15676182|ref|NP_273314.1| NADH dehydrogenase subunit M [Neisseria meningitidis MC58] gi|7225481|gb|AAF40712.1| NADH dehydrogenase I, M subunit [Neisseria meningitidis MC58] gi|316985186|gb|EFV64138.1| NADH-quinone oxidoreductase subunit M [Neisseria meningitidis H44/76] gi|325141094|gb|EGC63597.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis CU385] gi|325145251|gb|EGC67530.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis M01-240013] gi|325199461|gb|ADY94916.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis H44/76] Length = 498 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 216/472 (45%), Positives = 325/472 (68%), Gaps = 11/472 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGRSSFQ 63 LS+ ++P ++L + G R+ F L + F+ +L +++ FD+ +Q Sbjct: 7 LSLAIWIPIAAGVLVLAT---GSDSRAPFARVLAFMGALAGFLVTLPLFTGFDRLSGGYQ 63 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E++ WI +Y LGVDGIS+L ++L F+T +L+ W+ IQ+ +YM AFL++ Sbjct: 64 FTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLAGWEVIQKRPAQYMAAFLIMS 123 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+YA+ K FLYT GS+ ML A+ Sbjct: 124 GLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAM 183 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 V + ++ + SI+D + + P +Q +++AFF SFA+K+PMFP HTWLP+AHV+APT Sbjct: 184 VYLYYQTGSFSIVDFQNIEQIPLGVQQLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTG 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LSLIA+IY +V++VQTD+KKL Sbjct: 244 GSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLSLIAVIYIGMVALVQTDMKKL 303 Query: 303 IAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 +AYSSI+HMG+VT+G+F G ++GA+ QM+SHG VS+A+F C+GV+YDRLHTR Sbjct: 304 VAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTR 363 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+VIM + + V LA+ + Sbjct: 364 NIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTL 423 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + A Y+LW+Y++V+FG V +++D++ RE ++ +AV + G+YP Sbjct: 424 IYGASYTLWMYKRVIFGAIHNPHVAEMQDINCREFAILAILAVAVLGMGLYP 475 >gi|325137083|gb|EGC59679.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis M0579] Length = 498 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 309/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F G ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAI 463 Query: 458 IAVLTVFFGIYP 469 +AV+ + G+YP Sbjct: 464 LAVVVLGMGLYP 475 >gi|294666765|ref|ZP_06731999.1| NADH dehydrogenase subunit M [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603426|gb|EFF46843.1| NADH dehydrogenase subunit M [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 477 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 222/451 (49%), Positives = 306/451 (67%), Gaps = 15/451 (3%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFL 95 +L ++ F SL + +D + Q IE + WI Y Y+LGVDGI++ L+VLTT + Sbjct: 11 SLAVAVATFALSLPLLG-YDTANDAMQFIELHAWIPAYNIGYNLGVDGIAVALIVLTTLV 69 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 T ++ +W+SI + +Y+ AFL+LE + +G F + D +LFY+FFEA LIPMF+IIGVW Sbjct: 70 TVLALIGAWRSIDKRVNQYVAAFLILEGVTVGIFAATDAMLFYVFFEAMLIPMFLIIGVW 129 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF 215 GG RIYAA KFFLYTF GS+ ML +V + + + + DLYA+ + Q W++ AF Sbjct: 130 GGPRRIYAAMKFFLYTFLGSVLMLVGLVYLYLKGGSFQLADLYAL-QLTAKEQTWIFFAF 188 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 +FA+K+PMFP HTWLP+AHV+APTAGSV LA I LK+GGYG +RF LP+ P AS FA Sbjct: 189 LIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFA 248 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF------------SGMK 323 ++ LSLIA+IY LV++VQ D+KKL+AYSSIAHMG+VT+G F + Sbjct: 249 WLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIAHMGFVTLGTFIAFTLVREYGSTDAAR 308 Query: 324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMAN 383 G++GAM QM+SHG VS A+F C+GV+YDR+HTR I YGG+V+ MP +A M+F AN Sbjct: 309 LGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHTRRIADYGGVVNVMPWFATFSMLFFTAN 368 Query: 384 MGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ 443 GLPGTSGF+GEF+VI++ FQ VA A+ +V++A Y+LWLY++V FG V + Sbjct: 369 AGLPGTSGFVGEFMVILASFQKHPLVAFAAATTLVITAAYTLWLYKRVFFGEVANAHVAE 428 Query: 444 LKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 LKD++ RE ++ A + G+YP P+ D Sbjct: 429 LKDINGREAFVLGVFAAGVLALGLYPKPLTD 459 >gi|308388476|gb|ADO30796.1| NADH dehydrogenase chain M [Neisseria meningitidis alpha710] gi|325202915|gb|ADY98369.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis M01-240149] gi|325207286|gb|ADZ02738.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis NZ-05/33] Length = 498 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 310/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFTILAV 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|253702583|ref|YP_003023772.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter sp. M21] gi|251777433|gb|ACT20014.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter sp. M21] Length = 535 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 233/496 (46%), Positives = 333/496 (67%), Gaps = 8/496 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRS 60 LP LSI+TF P +G ++LF + G +A+ + T L ++ Sbjct: 3 QLPLLSILTFTPLIGAILLLFVNKNSHGVLRTVTMAVTVVTFVLSLPLITGYNAPGTDIG 62 Query: 61 SFQMIEYYHWI---DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 FQ IE WI + SYHLG+DGIS+ LV+LTTF+ P ILS++ +++E +EYMI Sbjct: 63 GFQFIENVPWIAAGPFQMSYHLGIDGISLWLVILTTFIMPIAILSTYTAVEEKVKEYMIC 122 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L+LE +IG F+S+D+ LFYI++E LIPM+ +IG+WGG RIYAA KFF+YT GS+ Sbjct: 123 LLLLEVGMIGTFISIDLFLFYIYWEVMLIPMYFMIGIWGGKNRIYAAVKFFIYTAVGSLL 182 Query: 178 MLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 ML A++ + ++ SII + ++ P + Q WM++AF +FAIK+PMFP HTWLP+A Sbjct: 183 MLVALISLYFKAGGGDFSIIRFWELNLDP-ATQVWMFLAFALAFAIKVPMFPLHTWLPDA 241 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +APTAGSV LA +MLK G YG IRF +PLFP AS F P+I LS+I IIYASLV+MV Sbjct: 242 HTEAPTAGSVILAAVMLKCGTYGYIRFAMPLFPEASAQFTPLIATLSVIGIIYASLVAMV 301 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KKL+AYSS+AH+G+V +G+++ GV G M QML+HG+ + ALF VG IY+R H Sbjct: 302 QQDVKKLVAYSSVAHLGFVMLGLYALNTQGVTGGMLQMLNHGVSTGALFLIVGFIYERRH 361 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-NTVAVLAS 414 TR I +GGL MP +A + M+ T +++GLPGT+GF+GEFLV++ F++ A++A+ Sbjct: 362 TRQISDFGGLAKQMPVFATMFMIVTFSSIGLPGTNGFVGEFLVLLGSFESELRWYAIIAT 421 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 GV+LSA+Y LW++++V+FG K K Q LKDL+ RE ++ P+ L F G+YP PI D Sbjct: 422 SGVILSAVYMLWMFQRVMFGELKNPKNQTLKDLNAREVAIMLPLLFLIFFLGVYPRPIID 481 Query: 475 TFSVPLSSIIENYTLK 490 + + + +I ++ Sbjct: 482 SMAPSIDRLIAQTKVQ 497 >gi|329118920|ref|ZP_08247615.1| NADH-quinone oxidoreductase subunit M [Neisseria bacilliformis ATCC BAA-1200] gi|327464948|gb|EGF11238.1| NADH-quinone oxidoreductase subunit M [Neisseria bacilliformis ATCC BAA-1200] Length = 499 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 213/435 (48%), Positives = 310/435 (71%), Gaps = 7/435 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L V+L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLRINYSLGVDGISVLFVILNAFITLMVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D LLFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLIMSGLINGAFAAQDALLFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII-DLYAMSKFPFSIQYWMWIAFFCSFAI 221 A+ K FLYT GS+ ML A+V + ++ S +I D + + P IQ +++AFF SFA+ Sbjct: 164 ASVKLFLYTLMGSLLMLVALVYLSYQAGGSFMIADFQNLKQIPLGIQQLLFVAFFLSFAV 223 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+PM+P HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P AS+YFAPVI L Sbjct: 224 KVPMWPVHTWLPDAHVEAPTGGSMVLAAITLKVGAYGFLRFILPILPDASRYFAPVIVVL 283 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS-----GVEGAMFQMLSH 336 SLIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F + V+GA+ QM+SH Sbjct: 284 SLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFLDGRLNDWAVKGAIMQMISH 343 Query: 337 GLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEF 396 G VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF Sbjct: 344 GFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEF 403 Query: 397 LVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 +VIM + V +LA+ ++L A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 MVIMGSVAVNFWVGLLAAITLILGASYTLWMYKRVIFGAITNPHVAEMKDINAREFLILA 463 Query: 457 PIAVLTVFFGIYPVP 471 +AV + G++P P Sbjct: 464 VLAVTVLGMGLWPEP 478 >gi|240113855|ref|ZP_04728345.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae MS11] gi|254494612|ref|ZP_05107783.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae 1291] gi|268599923|ref|ZP_06134090.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae MS11] gi|226513652|gb|EEH62997.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae 1291] gi|268584054|gb|EEZ48730.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae MS11] Length = 498 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 309/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q +++AFF SFA+K Sbjct: 164 ASVKLFLYTLTGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFVAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F G ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F CVGV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCVGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 V+M + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VVMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAV 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|325131598|gb|EGC54305.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis M6190] Length = 498 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 309/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F G ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAI 463 Query: 458 IAVLTVFFGIYP 469 +AV+ + G+YP Sbjct: 464 LAVVVLGMGLYP 475 >gi|296313732|ref|ZP_06863673.1| NADH dehydrogenase, M subunit [Neisseria polysaccharea ATCC 43768] gi|296839655|gb|EFH23593.1| NADH dehydrogenase, M subunit [Neisseria polysaccharea ATCC 43768] Length = 498 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 308/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIVPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F G ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAI 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|325130984|gb|EGC53711.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis OX99.30304] gi|325139147|gb|EGC61693.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis ES14902] Length = 498 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/432 (48%), Positives = 309/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q +++AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFVAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F G ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V++G V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIYGAIHNPHVAEMKDINCREFAILAV 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|161870806|ref|YP_001599979.1| NADH dehydrogenase subunit M [Neisseria meningitidis 053442] gi|161596359|gb|ABX74019.1| NADH dehydrogenase chain M [Neisseria meningitidis 053442] Length = 477 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 308/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 23 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 82 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 83 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 142 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 143 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 202 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 203 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 262 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F G ++GA+ QM+SHG Sbjct: 263 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISHG 322 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 323 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 382 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 383 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAV 442 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 443 LAVAVLGMGLYP 454 >gi|325205342|gb|ADZ00795.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis M04-240196] Length = 498 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 308/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F G ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFTILAV 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|59802059|ref|YP_208771.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae FA 1090] gi|194099631|ref|YP_002002762.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae NCCP11945] gi|239999830|ref|ZP_04719754.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae 35/02] gi|240014986|ref|ZP_04721899.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae DGI18] gi|240017434|ref|ZP_04723974.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae FA6140] gi|240081576|ref|ZP_04726119.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae FA19] gi|240116589|ref|ZP_04730651.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID18] gi|240118813|ref|ZP_04732875.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID1] gi|240122055|ref|ZP_04735017.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID24-1] gi|240124352|ref|ZP_04737308.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID332] gi|240126564|ref|ZP_04739450.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae SK-92-679] gi|240129026|ref|ZP_04741687.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae SK-93-1035] gi|260439650|ref|ZP_05793466.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae DGI2] gi|268595640|ref|ZP_06129807.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae 35/02] gi|268597672|ref|ZP_06131839.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae FA19] gi|268602258|ref|ZP_06136425.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID18] gi|268604524|ref|ZP_06138691.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID1] gi|268682979|ref|ZP_06149841.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID332] gi|268685144|ref|ZP_06152006.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae SK-92-679] gi|268687406|ref|ZP_06154268.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae SK-93-1035] gi|291042891|ref|ZP_06568632.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae DGI2] gi|293398099|ref|ZP_06642304.1| NADH dehydrogenase I subunit M [Neisseria gonorrhoeae F62] gi|59718954|gb|AAW90359.1| putative NADH dehydrogenase I chain M [Neisseria gonorrhoeae FA 1090] gi|193934921|gb|ACF30745.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae NCCP11945] gi|268549029|gb|EEZ44447.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae 35/02] gi|268551460|gb|EEZ46479.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae FA19] gi|268586389|gb|EEZ51065.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID18] gi|268588655|gb|EEZ53331.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID1] gi|268623263|gb|EEZ55663.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae PID332] gi|268625428|gb|EEZ57828.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae SK-92-679] gi|268627690|gb|EEZ60090.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae SK-93-1035] gi|291013325|gb|EFE05291.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae DGI2] gi|291611362|gb|EFF40432.1| NADH dehydrogenase I subunit M [Neisseria gonorrhoeae F62] gi|317165119|gb|ADV08660.1| NADH dehydrogenase subunit M [Neisseria gonorrhoeae TCDC-NG08107] Length = 498 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/432 (48%), Positives = 309/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q +++AFF SFA+K Sbjct: 164 ASVKLFLYTLTGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFVAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F G ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 V+M + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VVMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAV 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|269468287|gb|EEZ79969.1| NADH:ubiquinone oxidoreductase, chain M [uncultured SUP05 cluster bacterium] Length = 510 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 230/508 (45%), Positives = 335/508 (65%), Gaps = 28/508 (5%) Query: 3 LPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + LS++ +LP LG VIL + R V++ IS + F+ SL +++ FD Sbjct: 1 MELLSLLIWLPILGGALVILIGNERADTARW---VSVAISILVFVMSLSLYTEFDSSTHL 57 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E WI F +YH+GVDGIS+ L++LTTF T +++ W+ IQ YM AFL+ Sbjct: 58 MQFVEKTSWISQFDINYHIGVDGISMPLIILTTFSTILVLIAGWEVIQRRTAHYMAAFLM 117 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +E ++IG F +LD +LFY F+EASLIPM +IIGVWGG R+YAA KFFLYTF GS+ ML Sbjct: 118 MEGLIIGVFSALDGILFYAFWEASLIPMLLIIGVWGGDNRVYAAIKFFLYTFLGSVMMLV 177 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 +++ M + + SI+D++ + + + Q +++ AFF +FA+K+PMFP HTWLP+AHVQAP Sbjct: 178 SLIYMYNKGGSFSILDMHNL-ELTLAEQSYIFWAFFVAFAVKVPMFPVHTWLPDAHVQAP 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LA IMLKMGGYG RF LP+ P AS F+ V+ LSLIAI+Y V++VQ D+K Sbjct: 237 TGGSVILAAIMLKMGGYGFFRFSLPITPDASLQFSDVVIALSLIAIVYIGFVALVQRDMK 296 Query: 301 KLIAYSSIAHMGYVTIGIFS----------------------GMKSGVEGAMFQMLSHGL 338 KLIAYSSI+HMG+VT+G+F+ G G+EGAM QM+SHG Sbjct: 297 KLIAYSSISHMGFVTLGVFALFSILKMGADGNLVSLNGGSIDGALLGLEGAMVQMISHGF 356 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 +S+A+F VGV+YDRLH+R+I YGG++++MP++ ++F MAN GLPGTSGF+GEF+V Sbjct: 357 ISAAMFLVVGVLYDRLHSREISTYGGVINSMPKFTGFAVLFAMANAGLPGTSGFVGEFMV 416 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 I+ Q + AVLA+ +++ A Y+LW+ ++V +G + V+ LKD++ RE ++ + Sbjct: 417 ILGAVQANIWYAVLAATTLIVGASYTLWMVKRVFWGPITNDAVKTLKDINGREFFILAIL 476 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 A+ + G+YP PI + + ++ Sbjct: 477 ALAVLIVGLYPQPIIEVMHASIDHLLNQ 504 >gi|313669272|ref|YP_004049556.1| NADH dehydrogenase chain M [Neisseria lactamica ST-640] gi|313006734|emb|CBN88204.1| NADH dehydrogenase chain M [Neisseria lactamica 020-06] Length = 498 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/432 (47%), Positives = 311/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFAGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ I++ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIRKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIILS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG + V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIRNPHVAEMKDINCREFAILAV 463 Query: 458 IAVLTVFFGIYP 469 +A+ + G+YP Sbjct: 464 LAIAVLGMGLYP 475 >gi|325203373|gb|ADY98826.1| NADH:ubiquinone dehydrogenase, M subunit [Neisseria meningitidis M01-240355] Length = 498 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/432 (48%), Positives = 308/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F G ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEMKDINCREFAILAV 463 Query: 458 IAVLTVFFGIYP 469 +AV + G+YP Sbjct: 464 LAVAVLGMGLYP 475 >gi|300691037|ref|YP_003752032.1| NADH-quinone oxidoreductase subunit M [Ralstonia solanacearum PSI07] gi|299078097|emb|CBJ50740.1| NADH-quinone oxidoreductase subunit M [Ralstonia solanacearum PSI07] Length = 488 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 227/483 (46%), Positives = 329/483 (68%), Gaps = 5/483 (1%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS +LP F GV V+ S G + ++L S I+F+ +L + + FDK ++ Q Sbjct: 3 LSFAIWLPIFFGVLVLASGSDRNPGYVRW--MSLIGSLISFVITLPLITRFDKSTAAMQF 60 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI+ F SY+LGVDGIS+ VVLT F+T ++S+W+ I E +YM AFL+L Sbjct: 61 VEKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAQYMAAFLILSG 120 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F +LD LLFY+FFEA+LIPM++IIGVWGG R+YAA KFFLYT GS+ L A + Sbjct: 121 LMIGVFAALDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAIKFFLYTLLGSLLTLVAFL 180 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + + T I+ + + K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT G Sbjct: 181 YLYFHSGTFEILQWHQV-KLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGG 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LA IMLK+G YG +RF LP+ P AS A + +SLIA+IY LV++VQ D+KKL+ Sbjct: 240 SVVLAAIMLKLGAYGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSIAHMG+VT+G F + GVEG + QM+SHG +S A+F C+GV+YDR+H+R I YG Sbjct: 300 AYSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYG 359 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+V+ MP++A + + F MAN GLP TSGF+GEF+VI+ Q + + +LA+ ++ A Y Sbjct: 360 GVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVQFNFWIGLLAATALIFGAAY 419 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLW+ ++V+FG + V +L+DL+ RE M+ +A+ T++ G+YP P D + ++ Sbjct: 420 SLWMVKRVIFGDVANKHVAELQDLNAREFFMLGVLAIATLYMGLYPKPFTDVMHASVVNL 479 Query: 484 IEN 486 + + Sbjct: 480 LTH 482 >gi|293603931|ref|ZP_06686346.1| NADH-quinone oxidoreductase subunit M [Achromobacter piechaudii ATCC 43553] gi|292817768|gb|EFF76834.1| NADH-quinone oxidoreductase subunit M [Achromobacter piechaudii ATCC 43553] Length = 500 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 218/488 (44%), Positives = 330/488 (67%), Gaps = 10/488 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTIN----FIFSLFVWSVFDKGR 59 P+L++ F+P VF +L L GR G+ G+S + F+ ++ +++ FD Sbjct: 12 PWLTLAIFVPI--VFGLLV---LAVGRDDRPGLTRGLSLVGAFAGFLVTIPLYTGFDNTT 66 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 ++ Q +E WI+ F +YHLG+DGIS+ V+LT F+T +L+ W+ I +YM AF Sbjct: 67 AAMQFVEKASWIEAFNVNYHLGIDGISLWFVLLTAFITIIVVLAGWEVITSRVAQYMAAF 126 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L +++G F +LD +LFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 127 LILSGLMVGVFAALDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLMGSLLT 186 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A + + S I + K + Q +++A +FA+K+PM+P HTWLP+AHV+ Sbjct: 187 LIAFIYLWHASGGSFDILTWHQVKLGQTPQILIFVALLAAFAVKVPMWPVHTWLPDAHVE 246 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GS+ LA IMLK+G YG +RF LP+ P AS A ++ LSLIA+IY LV+++Q D Sbjct: 247 APTGGSIVLAAIMLKLGAYGFLRFSLPITPDASHSLAGLMITLSLIAVIYIGLVAIIQED 306 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSS+AHMG+VT+G F +GVEGA+ QM+SHG VS A+F C+GV+YDR+H+R Sbjct: 307 MKKLVAYSSVAHMGFVTLGFFIFNTAGVEGAIVQMISHGFVSGAMFMCIGVLYDRMHSRR 366 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+V+ MPR+A ++F+MAN GLP TSGF+GEF+VIM +++ + +LA+ ++ Sbjct: 367 IADYGGVVNVMPRFATFFILFSMANSGLPATSGFVGEFMVIMGAVEHNFWIGLLAATALI 426 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A YSLW+ ++VV G + V++L D++ RE ++ +A+ ++ GIYP P D V Sbjct: 427 LGASYSLWMVKRVVLGDIANDHVRELTDINRREFVILGVMAIAVLYMGIYPKPFTDVMHV 486 Query: 479 PLSSIIEN 486 + +++++ Sbjct: 487 SVEALLQH 494 >gi|254671581|emb|CBA09240.1| NADH-ubiquinone oxidoreductase, chain M [Neisseria meningitidis alpha153] gi|261391789|emb|CAX49244.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M; NDH-1, chain M) [Neisseria meningitidis 8013] Length = 498 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/432 (48%), Positives = 309/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIGVWGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F G ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAVIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V++G V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIYGAIHNPHVAEMKDINCREFAILAI 463 Query: 458 IAVLTVFFGIYP 469 +AV+ + G+YP Sbjct: 464 LAVVVLGMGLYP 475 >gi|325924687|ref|ZP_08186125.1| NADH dehydrogenase subunit M [Xanthomonas perforans 91-118] gi|325544893|gb|EGD16238.1| NADH dehydrogenase subunit M [Xanthomonas perforans 91-118] Length = 491 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 228/477 (47%), Positives = 316/477 (66%), Gaps = 19/477 (3%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 +LP +G +IL R + +L ++ F SL + +D + Q IE + W Sbjct: 3 WLPIIGGALILALRNAETARWA----SLAVAVATFALSLPLLG-YDTANDAMQFIELHAW 57 Query: 71 ID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAF 129 I Y Y+LGV GI++ L+VLTT +T ++ +W+SI + +Y+ AFL+LE + +G F Sbjct: 58 IPAYNIGYNLGVGGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLILEGVTVGIF 117 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML +V + + Sbjct: 118 AATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVGLVYLYLKG 177 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + + DLYA+ + Q W++ AF +FA+K+PMFP HTWLP+AHV+APTAGSV LA Sbjct: 178 GSFQLADLYAL-QLTAKEQTWIFFAFLIAFAVKVPMFPVHTWLPDAHVEAPTAGSVILAA 236 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I LK+GGYG +RF LP+ P AS FA ++ LSLIA+IY LV++VQ D+KKL+AYSSIA Sbjct: 237 IALKIGGYGFLRFNLPIVPDASHEFAWLVITLSLIAVIYVGLVALVQDDMKKLVAYSSIA 296 Query: 310 HMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 HMG+VT+G F + G++GAM QM+SHG VS A+F C+GV+YDR+HTR Sbjct: 297 HMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVLYDRMHTR 356 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI++ FQ VA A+ + Sbjct: 357 RIADYGGVVNVMPWFATFSMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVAFGAATTL 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 V++A Y+LWLY++V FG V +LKD++ RE ++ A + G+YP P+ D Sbjct: 417 VITAAYTLWLYKRVFFGEVANAHVAELKDINGREAFVLGVFAAGVLALGLYPKPLTD 473 >gi|83746309|ref|ZP_00943362.1| NADH-quinone oxidoreductase chain M [Ralstonia solanacearum UW551] gi|207723885|ref|YP_002254283.1| transmembrane nadh dehydrogenaseI(chain m) protein [Ralstonia solanacearum MolK2] gi|207742747|ref|YP_002259139.1| transmembrane nadh dehydrogenaseI(chain m) protein [Ralstonia solanacearum IPO1609] gi|83727059|gb|EAP74184.1| NADH-quinone oxidoreductase chain M [Ralstonia solanacearum UW551] gi|206589090|emb|CAQ36052.1| transmembrane nadh dehydrogenaseI(chain m) protein [Ralstonia solanacearum MolK2] gi|206594141|emb|CAQ61068.1| transmembrane nadh dehydrogenaseI(chain m) protein [Ralstonia solanacearum IPO1609] Length = 488 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 226/483 (46%), Positives = 328/483 (67%), Gaps = 5/483 (1%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS +LP F GV V+ S G + ++L S I+F+ +L + + FDK ++ Q Sbjct: 3 LSFAIWLPIFFGVLVLASGSDRNPGYVRW--MSLIGSLISFVITLPLITRFDKSTAAMQF 60 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI+ F SY+LGVDGIS+ VVLT F+T ++S+W+ I E +YM AFL+L Sbjct: 61 VEKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAQYMAAFLILSG 120 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F +LD LLFY+FFEA+LIPM++IIGVWGG R+YAA KFFLYT GS+ L A + Sbjct: 121 LMIGVFAALDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAIKFFLYTLLGSLLTLVAFL 180 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + T I+ + + K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT G Sbjct: 181 YLYLHSGTFEILQWHQL-KLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGG 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LA IMLK+G YG +RF LP+ P AS A + +SLIA+IY LV++VQ D+KKL+ Sbjct: 240 SVVLAAIMLKLGAYGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSIAHMG+VT+G F + GVEG + QM+SHG +S A+F C+GV+YDR+H+R I YG Sbjct: 300 AYSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYG 359 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+V+ MP++A + + F MAN GLP TSGF+GEF+VI+ + + + +LA+ ++ A Y Sbjct: 360 GVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAY 419 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLW+ ++V+FG + V +L+DL+ RE M+ +A+ T++ G+YP P D + ++ Sbjct: 420 SLWMVKRVIFGDVANQHVAELQDLNAREFFMLGVLAIATLYMGLYPKPFTDVMHASVVNL 479 Query: 484 IEN 486 + + Sbjct: 480 LTH 482 >gi|95928434|ref|ZP_01311182.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfuromonas acetoxidans DSM 684] gi|95135705|gb|EAT17356.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfuromonas acetoxidans DSM 684] Length = 528 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 227/503 (45%), Positives = 337/503 (66%), Gaps = 16/503 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSL-FVWSVFDKGR 59 M+ LS++TF P LG+F++L G G L + I F+ SL K Sbjct: 1 MSEHLLSLMTFFPLLGMFIVLMLPKNNGGLLK--GATLVFTLITFVISLPLALDPVFKTS 58 Query: 60 SSFQMIEYYHWI---DYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 E+ WI +YF +Y +G+DGIS+ LV+LTTF+ P +LS+W+++ +N + YM Sbjct: 59 GGMHYTEFAEWISVTNYFQMNYSVGIDGISLWLVMLTTFIMPIAVLSTWQAVTKNVKGYM 118 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L+LE+ ++GAF++LD+ LFYIF+E LIPM+ +IG+WGG+ RIYAA KFF+YT GS Sbjct: 119 ALMLLLETAMLGAFIALDLFLFYIFWELMLIPMYFMIGIWGGANRIYAAVKFFIYTAVGS 178 Query: 176 IFMLFAIVVMCWEKKTS-------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 + ML AI+ + + S SI D Y +S P ++Q W+++AF SFAIK+PMFP Sbjct: 179 LLMLVAILFIYYAAVNSGMDISGFSIADFYNLSLDP-ALQKWLFLAFAFSFAIKVPMFPV 237 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 HTWLP+AH +APTAGSV LA +MLKMG YG +RF +PLFP A+Q F P + L++I I+Y Sbjct: 238 HTWLPDAHTEAPTAGSVILAAVMLKMGTYGYVRFAMPLFPEATQTFLPYMTALAVIGIVY 297 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 +LV+M+Q D+KKL+AYSS++H+G+V +GIF+ GV GA+ QM++HG+ + ALF VG Sbjct: 298 GALVAMMQKDVKKLVAYSSVSHLGFVMLGIFALNTVGVSGAVLQMINHGISTGALFLIVG 357 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-N 407 IY+R HTR I +GGL MP +AV+ M+ T++++GLP T+GF+GEF++++ FQ+ Sbjct: 358 FIYERRHTRLISEFGGLSKQMPVFAVIFMIVTLSSIGLPATNGFVGEFMILLGAFQSELR 417 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 AV+A+ GV+L+A+Y LW++++V+FG K Q LKDL+LRE C++ P+ V + G+ Sbjct: 418 WFAVVATSGVILAAVYMLWMFQRVMFGKLDNPKNQVLKDLNLRELCVILPLLVFVFWIGV 477 Query: 468 YPVPIRDTFSVPLSSIIENYTLK 490 YP + + + +IE + K Sbjct: 478 YPNTFLEKMTPAIDQMIEQVSGK 500 >gi|291613550|ref|YP_003523707.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sideroxydans lithotrophicus ES-1] gi|291583662|gb|ADE11320.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sideroxydans lithotrophicus ES-1] Length = 497 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 226/486 (46%), Positives = 328/486 (67%), Gaps = 9/486 (1%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGRS 60 P LS +LP L GV V+ G R + +AL + ++F+ ++ +++ FD+ S Sbjct: 6 PLLSAAIWLPILFGVLVLA----TGNDRNARLARTIALVGAILSFLVTIPLYTGFDRMTS 61 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q + WI F YHLGVDGIS+L V+L +F TP +++ W+ I++ +YM AFL Sbjct: 62 DMQFVVLKDWIPRFNIHYHLGVDGISLLFVLLNSFFTPLVVIAGWQVIEKRVAQYMAAFL 121 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++ +V G F+SLD +LFY+F+EA LIPMF+IIGVWGG R+YAA KFFLYT GS+ ML Sbjct: 122 IMSGLVNGVFVSLDAMLFYVFWEAMLIPMFIIIGVWGGPNRVYAALKFFLYTLLGSLLML 181 Query: 180 FAIVVMCWEKKTS-SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A++ + + S I+D + M+ + Q ++IAFF +F++K+PMFP HTWLP+AHV+ Sbjct: 182 VALLYLYHQSGGSFDILDYHRMAIPSLTAQILVFIAFFMAFSVKVPMFPVHTWLPDAHVE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV LA IMLK+G YG IRF LP+ P AS Y APV+ LSLIA++Y LV++ Q+D Sbjct: 242 APTGGSVILAAIMLKVGAYGFIRFSLPIVPDASHYLAPVMIALSLIAVVYIGLVALTQSD 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSSI+HMG+VT+G F G+EGA+ QM+SHG +S ALF C+GV+YDR+H+R Sbjct: 302 MKKLVAYSSISHMGFVTLGFFIFNSYGMEGALLQMISHGFISGALFLCIGVLYDRVHSRQ 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+ + MP +A M+F MAN GLPGTSGF+GEF+VIM + + A A+ ++ Sbjct: 362 IVDYGGVANKMPVFAAFFMLFAMANSGLPGTSGFVGEFMVIMGAVKANFWFAFAAASTLI 421 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 A Y+LW+Y++V+FG + V L+D+S RE+ + +A+ + G+YP+P D Sbjct: 422 FGAAYTLWMYKRVIFGAVANDHVAHLRDISGREKIVFIILAITVLGMGLYPLPFADIMHT 481 Query: 479 PLSSII 484 ++ ++ Sbjct: 482 SVTDLL 487 >gi|225077036|ref|ZP_03720235.1| hypothetical protein NEIFLAOT_02088 [Neisseria flavescens NRL30031/H210] gi|224951593|gb|EEG32802.1| hypothetical protein NEIFLAOT_02088 [Neisseria flavescens NRL30031/H210] Length = 498 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/432 (47%), Positives = 309/432 (71%), Gaps = 6/432 (1%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 F+ +L +++ FD+ +Q E++ WI +Y LGVDGIS+L ++L F+T +L+ Sbjct: 44 GFLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVLA 103 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 W+ IQ+ +YM AFL++ ++ GAF + D +LFY+FFE LIP+++IIG WGG R+Y Sbjct: 104 GWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGGWGGPRRVY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+ K FLYT GS+ ML A+V + ++ + SI+D + + P +Q ++ AFF SFA+K Sbjct: 164 ASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVK 223 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LS Sbjct: 224 VPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLS 283 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHG 337 LIA+IY +V++VQTD+KKL+AYSSI+HMG+VT+G+F +G ++GA+ QM+SHG Sbjct: 284 LIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLDDWALKGAIIQMISHG 343 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VS+A+F C+GV+YDRLHTR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+ Sbjct: 344 FVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFM 403 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 VIM + + V LA+ ++ A Y+LW+Y++V+FG + V ++KD++ RE ++ Sbjct: 404 VIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIRNPHVAEMKDINCREFAILAV 463 Query: 458 IAVLTVFFGIYP 469 +A+ + G+YP Sbjct: 464 LAIAVLGMGLYP 475 >gi|77166011|ref|YP_344536.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus oceani ATCC 19707] gi|254436371|ref|ZP_05049877.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Nitrosococcus oceani AFC27] gi|76884325|gb|ABA59006.1| NADH dehydrogenase subunit M [Nitrosococcus oceani ATCC 19707] gi|207088061|gb|EDZ65334.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Nitrosococcus oceani AFC27] Length = 504 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 227/498 (45%), Positives = 328/498 (65%), Gaps = 17/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 LP LS+V +LP LG F++L +G ++LG+S + F+ S +++ FD ++ Sbjct: 4 GLPLLSLVIWLPILGGFLVL---AVGNHVERVRWLSLGVSGLTFVVSWSLYTGFDISTAT 60 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q E W++ F YHLG+DGIS+ L++LTTF T +++ W+ I+ +YM +FL+ Sbjct: 61 MQFQEKLSWVEAFDVYYHLGIDGISMPLIILTTFSTVLVVIAGWRVIEHKLAQYMASFLI 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +E ++ G F +LD +LFY FFE LIP+F+IIG+WGG RIYA KFFLYTF GS+F L Sbjct: 121 MEGLMNGVFAALDAVLFYFFFEGMLIPLFLIIGIWGGPNRIYATLKFFLYTFLGSVFFLL 180 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ + SI++ + + Q +++AF +FA+K+PM+P HTWLP+AHV+AP Sbjct: 181 ALLYLRSVTGGFSILEFHQV-PLDMQAQIGIFLAFLLAFAVKVPMWPVHTWLPDAHVEAP 239 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LA I LK+G YG +RF LP+ P AS +I LSLIA++Y LV++VQ D+K Sbjct: 240 TGGSVILAAITLKIGAYGFMRFSLPITPDASMALNWLIITLSLIAVVYIGLVAIVQEDLK 299 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KLIAYSSIAHMG+VT+G+F G G+EGA+ QM+SHGLVS+A+F CVG Sbjct: 300 KLIAYSSIAHMGFVTLGLFIAFAIFSQGVEGDGALLGLEGALVQMISHGLVSAAMFLCVG 359 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDRLHTR I YGG+V+ MP +A M++F MAN+GLPGTSGF+GEFLVI+ FQ Sbjct: 360 VLYDRLHTRLIKDYGGVVNKMPIFASFMVLFAMANVGLPGTSGFVGEFLVILGAFQADFW 419 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 A AS ++L A Y+LW+ ++VVFG +KV ++DL+ RE ++ +A + G++ Sbjct: 420 YAFFASMTLILGATYTLWMVKRVVFGDIANDKVATMEDLNSREFLVLGTLAAAVLLLGVW 479 Query: 469 PVPIRDTFSVPLSSIIEN 486 P P+ + L +++ Sbjct: 480 PQPLLEVMHTSLENLLSQ 497 >gi|269836333|ref|YP_003318561.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphaerobacter thermophilus DSM 20745] gi|269785596|gb|ACZ37739.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphaerobacter thermophilus DSM 20745] Length = 527 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 237/502 (47%), Positives = 330/502 (65%), Gaps = 38/502 (7%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS +T++P +G +I F + ++ VALG S ++ SL + + FD S Q Sbjct: 5 PILSALTYVPLVGAAIIFF--WPKASPQAARWVALGASLVSLALSLVMLAGFDTSASGMQ 62 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E + W+ SYH GVDGIS+LL+VL+T LT I++SW SIQ REYMI L+LE Sbjct: 63 FVERFEWLPALGVSYHFGVDGISVLLIVLSTLLTTIGIVASWSSIQHRVREYMITMLMLE 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + ++G F+SLD+ LFYIF+E LIPM ++IGVWG + R+YAA KFFLYT GS+ ML I Sbjct: 123 TGMLGVFVSLDLFLFYIFWEVMLIPMALLIGVWGSANRVYAAVKFFLYTLAGSLLMLVGI 182 Query: 183 VVMC---WEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + +E+ +D+ + + + ++ Q W++ AFF +FAIK+PM+PFHTWLP+AHV Sbjct: 183 IALYQSYFEQTGIRTLDVLQLQQGNYGYTFQMWVFAAFFIAFAIKVPMWPFHTWLPDAHV 242 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAG++LKMGGYG +RF LPLFP A++ +APVI LS+I IIY +LV++VQ Sbjct: 243 EAPTAGSVLLAGVLLKMGGYGLLRFNLPLFPDAARDWAPVIIVLSVIGIIYGALVALVQP 302 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KKL+AYSS++HMG+VT+GIF+ G+ GAM MLSHGLV+SALF CVGVIYDR HTR Sbjct: 303 DLKKLVAYSSVSHMGFVTLGIFAFNAQGLYGAMIVMLSHGLVTSALFLCVGVIYDRGHTR 362 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I +GGL NMP YA + +FT A++GLPG SGF+GEFL I+ F+ V+A V Sbjct: 363 LISRFGGLATNMPVYASFLGLFTFASLGLPGLSGFVGEFLSILGAFRAERAAGVIAFLVV 422 Query: 418 VLSALYSLWLYRKVVFGVSKCE------------------------------KVQQLKDL 447 + SA Y LW+Y++V + + E + +D+ Sbjct: 423 IFSAWYMLWMYQRVAWQRAPGEPPDANDPEAKLAGDEPRPVMGGAEHGGDVVDPRTFRDV 482 Query: 448 SLRERCMVYPIAVLTVFFGIYP 469 + RE + P+AVLT++ G+YP Sbjct: 483 TWREAMTLAPLAVLTIWMGVYP 504 >gi|150406469|ref|YP_001315113.1| NADH dehydrogenase subunit 4 [Chlorokybus atmophyticus] gi|126507706|gb|ABO15103.1| NADH dehydrogenase subunit 4 [Chlorokybus atmophyticus] Length = 502 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 232/480 (48%), Positives = 329/480 (68%), Gaps = 5/480 (1%) Query: 9 VTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYY 68 V F P +G ++ F R +A S I F+FSL +W FD + FQ + Sbjct: 23 VAFTPLVGAIILFFIP--NEKIRLIRSIAFTTSLITFLFSLLLWLEFDYSTAKFQFVNNV 80 Query: 69 HWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 +W+ + ++++GVDGISI ++LTTFL P CIL W +++ ++Y+IAFLVLE+++I Sbjct: 81 NWLPFSNINFYIGVDGISIFFIILTTFLIPVCILVGWSTVKNYLKQYLIAFLVLETLMIF 140 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMC 186 F +LD+LLFY+FFE+ LIPMF+IIG+WG ER I AAY+FFLYT FGS+FML AI+ + Sbjct: 141 VFCTLDLLLFYLFFESVLIPMFLIIGIWGSRERKIRAAYQFFLYTLFGSVFMLLAILFIY 200 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ T+ + LY ++F Q +W+AFF SFA+K+PM P H WLP AHV+APTAGSV Sbjct: 201 FQTGTTDLQILYT-TEFTVQRQIILWLAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVI 259 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAGI+LK+G YG +RF +P+FP A+ YF P+I+ +S+IAIIY SL ++ Q D+KK+IAYS Sbjct: 260 LAGILLKLGSYGFLRFSIPIFPEATLYFTPLIYTMSVIAIIYTSLTTLSQIDLKKIIAYS 319 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+AHM +VTIG+FS G+EG++ MLSHGLVSSALF CVG +YDR TR I YGG V Sbjct: 320 SVAHMNFVTIGLFSLNIQGIEGSLLLMLSHGLVSSALFLCVGALYDRHKTRLIQYYGGCV 379 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP +++ ++FT+ N+ LPGTS F+GEFL+++ FQ++ + LA+ G+VL A YSLW Sbjct: 380 QTMPLFSLFFLIFTLGNLSLPGTSSFVGEFLILVGSFQSNTMITTLAATGMVLGAAYSLW 439 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 LY +V+FG K + + DL+ RE M P + + GIYP + +S++I++ Sbjct: 440 LYNRVIFGPFKPNFINRFSDLNRREVMMFLPFIIGIFWIGIYPEIFLRVMHISVSALIQH 499 >gi|17546769|ref|NP_520171.1| NADH dehydrogenase subunit M [Ralstonia solanacearum GMI1000] gi|17429069|emb|CAD15757.1| probable transmembrane nadh dehydrogenaseI(chain m) oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 488 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 225/483 (46%), Positives = 329/483 (68%), Gaps = 5/483 (1%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS +LP F GV V+ S G + ++L S ++F+ +L + + FDK ++ Q Sbjct: 3 LSFAIWLPIFFGVLVLASGSDRNPGYVRW--MSLIGSLVSFVITLPLITRFDKSTAAMQF 60 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI+ F SY+LGVDGIS+ VVLT F+T ++S+W+ I E +YM AFL+L Sbjct: 61 VEKSTWIERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAQYMAAFLILSG 120 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F +LD LLFY+FFEA+LIPM++IIGVWGG R+YAA KFFLYT GS+ L A + Sbjct: 121 LMIGVFAALDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAIKFFLYTLLGSLLTLVAFL 180 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + + T I+ + + K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT G Sbjct: 181 YLYFHSGTFEILQWHQL-KLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGG 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LA IMLK+G YG +RF LP+ P AS A + +SLIA+IY LV++VQ D+KKL+ Sbjct: 240 SVVLAAIMLKLGAYGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSIAHMG+VT+G F + GVEG + QM+SHG +S A+F C+GV+YDR+H+R I YG Sbjct: 300 AYSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYG 359 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+V+ MP++A + + F MAN GLP TSGF+GEF+VI+ + + + +LA+ ++ A Y Sbjct: 360 GVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAY 419 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLW+ ++V+FG + V +L+DL+ RE M+ +A+ T++ G+YP P D + ++ Sbjct: 420 SLWMVKRVIFGDVANKHVAELQDLNAREFFMLGVLAIATLYMGLYPKPFTDVMHASVVNL 479 Query: 484 IEN 486 + + Sbjct: 480 LTH 482 >gi|217970168|ref|YP_002355402.1| NADH dehydrogenase subunit M [Thauera sp. MZ1T] gi|217507495|gb|ACK54506.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thauera sp. MZ1T] Length = 493 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 218/489 (44%), Positives = 330/489 (67%), Gaps = 8/489 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGR 59 ++P LS+ ++P +G ++L + G R + +AL ++ F+ ++ +++ FD G Sbjct: 3 DIPLLSLAIWVPIIGGLLVLAT---GSDRNAPLARMLALAVAVAGFVVTIPLYTGFDVGT 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S+ Q +E W+ F +YHLGVDGIS+L V+L F+T + + W+ IQ +YM AF Sbjct: 60 SAMQFVELQSWVPRFNINYHLGVDGISVLFVLLNAFITIIVVAAGWQVIQTKVAQYMAAF 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L++ ++ G F +LD +LFY+FFEASLIP+++IIG+WGG+ R+YAA KFFLYT FGS+ M Sbjct: 120 LIMSGLMNGIFSALDAVLFYVFFEASLIPLYLIIGIWGGANRVYAAIKFFLYTLFGSLLM 179 Query: 179 LFAIVVMCWEKKTS-SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L A++ + + S SI+D + + P Q +++AF +F +K+PM+P HTWLP+AHV Sbjct: 180 LIALLYLFMQSGGSFSILDWHQL-PLPIEPQILIFLAFLIAFGVKVPMWPVHTWLPDAHV 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APT GSV LA I LK+G YG +RF LP+ P A+ AP++ LSLIA++Y V++VQ Sbjct: 239 EAPTGGSVVLAAIALKLGAYGFLRFSLPIVPDAANELAPLVITLSLIAVVYIGFVALVQA 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KKL+AYSSI+HMG+VT+G F GVEGA+ QM+SHG VS A+F C+GV+YDRLH+R Sbjct: 299 DMKKLVAYSSISHMGFVTLGFFMFNSLGVEGALVQMISHGFVSGAMFLCIGVLYDRLHSR 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG+VH MP++A M+FTMAN GLP TSGF+GEF+V++ Q + + +A+ + Sbjct: 359 QIADYGGVVHTMPKFAAFFMLFTMANSGLPATSGFVGEFMVVLGAVQYNFWIGFVAATTL 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +L A YSLW+Y++VVFG V +L+D++ RE + +A + G+YP P + Sbjct: 419 ILGAAYSLWMYKRVVFGKVANPHVAELEDINGREFAFLAVLAACVLAMGLYPFPFTEVMH 478 Query: 478 VPLSSIIEN 486 ++ ++ + Sbjct: 479 ASVNELLRH 487 >gi|300703654|ref|YP_003745256.1| NADH-quinone oxidoreductase subunit m [Ralstonia solanacearum CFBP2957] gi|299071317|emb|CBJ42635.1| NADH-quinone oxidoreductase subunit M [Ralstonia solanacearum CFBP2957] Length = 488 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 225/483 (46%), Positives = 328/483 (67%), Gaps = 5/483 (1%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS +LP F GV V+ S G + ++L S I+F+ +L + + FDK ++ Q Sbjct: 3 LSFAIWLPIFFGVLVLASGSDRNPGYVRW--MSLIGSLISFVITLPLITRFDKSTAAMQF 60 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E W++ F SY+LGVDGIS+ VVLT F+T ++S+W+ I E +YM AFL+L Sbjct: 61 VEKSSWVERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAQYMAAFLILSG 120 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F +LD LLFY+FFEA+LIPM++IIGVWGG R+YAA KFFLYT GS+ L A + Sbjct: 121 LMIGVFAALDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAIKFFLYTLLGSLLTLVAFL 180 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + T I+ + + K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT G Sbjct: 181 YLYLHSGTFEILQWHQL-KLSLNEQILLFIAFFMAFAVKVPMWPVHTWLPDAHVEAPTGG 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LA IMLK+G YG +RF LP+ P AS A + +SLIA+IY LV++VQ D+KKL+ Sbjct: 240 SVVLAAIMLKLGAYGFLRFSLPIAPDASHSLAAFVIAISLIAVIYIGLVALVQADMKKLV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSIAHMG+VT+G F + GVEG + QM+SHG +S A+F C+GV+YDR+H+R I YG Sbjct: 300 AYSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYG 359 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+V+ MP++A + + F MAN GLP TSGF+GEF+VI+ + + + +LA+ ++ A Y Sbjct: 360 GVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAY 419 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLW+ ++V+FG + V +L+DL+ RE M+ +A+ T++ G+YP P D + ++ Sbjct: 420 SLWMVKRVIFGDVGNQHVAELQDLNAREFFMLGVLAIATLYMGLYPKPFTDVMHASVVNL 479 Query: 484 IEN 486 + + Sbjct: 480 LTH 482 >gi|295311648|ref|YP_003587245.1| NADH dehydrogenase subunit 4 [Citrullus lanatus] gi|259156776|gb|ACV96638.1| NADH dehydrogenase subunit 4 [Citrullus lanatus] Length = 495 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 235/483 (48%), Positives = 323/483 (66%), Gaps = 5/483 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + P LG ++LF R + L S I F++SL +W FD + FQ + Sbjct: 12 LSGLILCPVLGSIILLFIP--NSRIRLIRLIGLCASLITFLYSLVLWIQFDPSTAKFQFV 69 Query: 66 EYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E W+ Y +++LG+DGIS+ V+LTTFL P CIL W ++ +EY+IAFL+ E + Sbjct: 70 ESLRWLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFL 129 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIV 183 +I F LD+LLFY+FFE+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+ Sbjct: 130 MIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAIL 189 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 ++ + T+ + + ++F Q ++WIAFF SFA+K+PM P H WLP AHV+APTAG Sbjct: 190 LILLQTGTTDL-QILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAG 248 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI+LK+G YG +RF +P+FP A+ P I+ LS IAIIY SL ++ Q D+KK+I Sbjct: 249 SVILAGILLKLGTYGFLRFSIPMFPEATLCATPFIYTLSAIAIIYTSLTTLRQIDLKKII 308 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM VTIG+FS G+ G++ MLSHGLVSSALF CVGV+YDR TR + YG Sbjct: 309 AYSSVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYG 368 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GLV MP ++ + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A Y Sbjct: 369 GLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAY 428 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLWLY +VV G K + + + DL+ RE + P V V+ G+YP D +S++ Sbjct: 429 SLWLYNRVVSGNLKPDFLHKFSDLNGREVFIFIPFLVGVVWMGVYPKVFLDYMHTSVSNL 488 Query: 484 IEN 486 +++ Sbjct: 489 VQH 491 >gi|167375203|gb|ABZ79355.1| NADH dehydrogenase subunit 4 [Bambusa oldhamii] gi|196052308|gb|ABZ79357.2| NADH dehydrogenase subunit 4 [Phyllostachys edulis] Length = 495 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 234/483 (48%), Positives = 323/483 (66%), Gaps = 5/483 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + P LG ++LF R + L +S I F++SL +W FD + FQ + Sbjct: 12 LSGLILCPVLGSIILLFIP--NSSIRLIRLIGLCVSLITFLYSLVLWIQFDPSTAKFQFV 69 Query: 66 EYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E W+ Y + ++G+DG+S+ V+LTTFL P CIL W ++ +EY+IAFL+ E + Sbjct: 70 ESLRWLPYENIHLYMGIDGLSLFFVILTTFLIPICILVGWSGMRSFGKEYIIAFLICEFL 129 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIV 183 +I F LD+LLFY+FFE+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+ Sbjct: 130 MIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAIL 189 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 ++ + T+ + + ++F Q +WIAFF SFA+K+PM P H WLP AHV+APTAG Sbjct: 190 LILLQTGTTDL-QILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAG 248 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI+LK+G YG +RF +P+FP A+ F P I+ LS IAIIY SL ++ Q D+KK+I Sbjct: 249 SVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKII 308 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM VTIG+FS G+ G++ MLSHGLVSSALF CVGV+YDR TR + YG Sbjct: 309 AYSSVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYG 368 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GLV MP ++ + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A Y Sbjct: 369 GLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAY 428 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLWLY +VV G K + + + DL+ RE + P V V+ G+YP D +S++ Sbjct: 429 SLWLYNRVVSGNLKPDFLYKFSDLNGREVFIFLPFLVGVVWMGVYPKVFLDCMHTSVSNL 488 Query: 484 IEN 486 +++ Sbjct: 489 VQH 491 >gi|152980305|ref|YP_001353164.1| NADH dehydrogenase I chain M [Janthinobacterium sp. Marseille] gi|151280382|gb|ABR88792.1| NADH dehydrogenase I chain M [Janthinobacterium sp. Marseille] Length = 496 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 226/494 (45%), Positives = 330/494 (66%), Gaps = 22/494 (4%) Query: 4 PFLSIVTFLPF-LGVFVILFSSYLGCGRR---------SFFGVALGISTINFIFSLFVWS 53 P LS+ +LP GVF+ L GR S FG S ++F+ +L + + Sbjct: 7 PLLSLAIWLPIAFGVFI------LAVGRDTNPNAVRVLSLFG-----SIVSFLVTLPIVA 55 Query: 54 VFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 FD Q +E WID F +Y LGVDG+S+ V+LT F+T F ++++W+ I++ Sbjct: 56 KFDNAAHGMQFVEKMKWIDIFNINYSLGVDGLSMWFVILTAFITIFVVIAAWEVIEKRVA 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF 172 +YM AFL+L ++IG F +LD LLFY+FFE++LIPMF+IIGVWGG+ R+YA+ KFFLYTF Sbjct: 116 QYMGAFLILSGLMIGVFCALDGLLFYVFFESTLIPMFIIIGVWGGANRVYASIKFFLYTF 175 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 FGS+ ML A++ + ++ S I + P Q +++AF +FA+K+PM+P HTWL Sbjct: 176 FGSLLMLVALLYLYFKSGHSFDILAWHTLPLPMDAQILIFLAFLMAFAVKVPMWPVHTWL 235 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHV+APT GSV LA IMLK+G YG +RF LP+ P AS Y + + LSLIA+IY LV Sbjct: 236 PDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHYLSGFMITLSLIAVIYIGLV 295 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++VQTD+KKL+AYSSIAHMG+VT+G F V+G + QM+SHG VS A+F C+GV+YD Sbjct: 296 ALVQTDMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFLCIGVLYD 355 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+HTR+I YGG+V+ MP++A ++F+M N GLP TSGF+GEF+VI+ + + + +L Sbjct: 356 RMHTRNIADYGGVVNVMPKFAAFFVLFSMGNAGLPATSGFVGEFMVILGAVKFNFWIGLL 415 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ ++L A YSLWL ++V+FG V ++KDL+ RE M+ +A+ + G+YP P Sbjct: 416 AATALILGAAYSLWLAKRVIFGAITNHHVSEMKDLNKREFLMLGLLAIAVLAMGLYPAPF 475 Query: 473 RDTFSVPLSSIIEN 486 D ++ ++++ Sbjct: 476 TDAMQTSVTDLLKH 489 >gi|134095019|ref|YP_001100094.1| NADH dehydrogenase I subunit M [Herminiimonas arsenicoxydans] gi|133738922|emb|CAL61969.1| NADH-quinone oxidoreductase subunit M [Herminiimonas arsenicoxydans] Length = 496 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 225/493 (45%), Positives = 328/493 (66%), Gaps = 12/493 (2%) Query: 4 PFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGIS----TINFIFSLFVWSVFDKG 58 P LS+ +LP G+ VI GR VA +S ++F+ +L + FD Sbjct: 7 PLLSLAIWLPIAFGIVVI------ALGRDDNPNVARSVSLVGAIVSFLVTLPLIQKFDNA 60 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 Q +E + WID F +Y LGVDG+S+ VVLT F+T F +++ W+ I++ +YM A Sbjct: 61 AHGMQFVEKFKWIDIFNINYSLGVDGLSMWFVVLTAFITIFVVIAGWEVIEKRVGQYMGA 120 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL+L ++IG F +LD LLFY+FFE++LIPMF+IIGVWGG+ R+YA+ KFFLYTFFGS+ Sbjct: 121 FLILSGLMIGVFCALDGLLFYVFFESTLIPMFIIIGVWGGANRVYASIKFFLYTFFGSLL 180 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML A++ + ++ S I + P Q +++AF +FA+K+PM+P HTWLP+AHV Sbjct: 181 MLVALLYLYFKSGHSFDILAWHTLPLPMDAQILIFLAFLMAFAVKVPMWPVHTWLPDAHV 240 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APT GSV LA IMLK+G YG +RF LP+ P AS Y + + LSLIA+IY LV++VQ Sbjct: 241 EAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHYLSGFMITLSLIAVIYIGLVALVQK 300 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KKL+AYSSIAHMG+VT+G F V+G + QM+SHG VS A+F C+GV+YDR+HTR Sbjct: 301 DMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIAQMISHGFVSGAMFLCIGVLYDRMHTR 360 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I YGG+V+ MP++A ++F+M N GLP TSGF+GEF+VI+ Q + + +LA+ + Sbjct: 361 NIADYGGVVNTMPKFAAFFVLFSMGNAGLPATSGFVGEFMVILGAVQYNFWIGLLAATAL 420 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +L A YSLWL ++V+FG V +LKD++ RE M+ +A+ + G+YP P D Sbjct: 421 ILGAAYSLWLAKRVLFGAVANHHVAELKDINKREFLMLGLLAIAVLAMGLYPAPFTDVMQ 480 Query: 478 VPLSSIIENYTLK 490 ++ ++++ + Sbjct: 481 TSVADLLKHVAIS 493 >gi|30249725|ref|NP_841795.1| NADH dehydrogenase subunit M [Nitrosomonas europaea ATCC 19718] gi|30180762|emb|CAD85676.1| possible nuoM; transmembrane NADH dehydrogenase I (chain M) oxidoreductase protein [Nitrosomonas europaea ATCC 19718] Length = 493 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 222/485 (45%), Positives = 326/485 (67%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS++ +LP + ++L +F + ++ F+ +L ++S FD S+ Q Sbjct: 6 PLLSLIIWLPIIFGLIVLVMGDRNVRAVRWFSLVGAVA--GFLVALPLYSGFDPSTSAMQ 63 Query: 64 MIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E+ W + Y LGVDGIS+ L++L F+TP +++ W+ I+E +YM AFL++ Sbjct: 64 FTEHLVWFERLNVFYSLGVDGISMPLIILNCFITPIVVIAGWEVIRERVSQYMGAFLIMS 123 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +V G F SLD +LFY F+E SLIPMF+IIGVWGG RIYAA KFFLYT GS+ ML A+ Sbjct: 124 GVVNGVFSSLDAVLFYSFWETSLIPMFIIIGVWGGPNRIYAAIKFFLYTLLGSLLMLVAL 183 Query: 183 VVMCWEKKTS-SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + + S SI+D Y P + Q ++IAF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 184 IYLYQTSGGSFSILD-YHHLPLPMTAQILIFIAFMLAFAVKVPMWPVHTWLPDAHVEAPT 242 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA I+LK+GGYG +RF LP+ P AS + ++ LSLIA++Y +V+++Q D+KK Sbjct: 243 GGSVVLAAILLKLGGYGFLRFSLPVAPDASHELSGILIVLSLIAVVYIGIVALMQQDMKK 302 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG+VT+G F G+EGAM QM+SHG +S A+F CVGV+YDRLH+R I Sbjct: 303 LIAYSSVSHMGFVTLGFFLFNAYGIEGAMVQMISHGFISGAMFLCVGVLYDRLHSRQIAD 362 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP +A + M+F MAN GLPGTSGF+GEF+VIM + + A+ ++L A Sbjct: 363 YGGVVNRMPVFAALFMLFAMANAGLPGTSGFVGEFMVIMGSIEVNFWYGFFAALTLILGA 422 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LW+Y+KV+FG V+ ++D+S RE ++ +AV+ + GIYP+P+ + V + Sbjct: 423 SYTLWMYKKVIFGEVTNSNVEGMQDISSREFLILAILAVMVLGLGIYPLPLTEVMHVTVD 482 Query: 482 SIIEN 486 +++E+ Sbjct: 483 NLLEH 487 >gi|15836920|ref|NP_297608.1| NADH dehydrogenase subunit M [Xylella fastidiosa 9a5c] gi|9105140|gb|AAF83128.1|AE003884_13 NADH-ubiquinone oxidoreductase, NQO13 subunit [Xylella fastidiosa 9a5c] Length = 501 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 239/486 (49%), Positives = 325/486 (66%), Gaps = 18/486 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P LS++ +LP +G +IL + R + VAL F FSL++ +D + + Sbjct: 3 NWPLLSLLIWLPIIGGLLILGLRNVHVARWAALAVALA----TFGFSLYLLGGYDIAKDA 58 Query: 62 FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E + WI Y Y+LGVDGI++ LV+LTT +T ++ SW +I + +Y+ AFL+ Sbjct: 59 LQFVEQHVWIQTYSIGYNLGVDGIAVALVLLTTLVTVLVLIGSWGAINQRVPQYVAAFLI 118 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + IG F + D +LFY+FFEA LIPMF+IIGVWGG RIYAA KFFLYTF GS+ ML Sbjct: 119 LEGVTIGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLV 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 ++ + + + + DLYAM + Q W++ AF +FA+K+PMFP HTWLP+AHV+AP Sbjct: 179 GLIYLYLKGGSFQLADLYAM-QLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPDAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I LK+GGYG +RF LP+ P AS FA V+ LSLIA+IY LV++VQ D+K Sbjct: 238 TAGSVILAAIALKIGGYGFLRFNLPIVPDASHEFAWVVIALSLIAVIYVGLVALVQEDMK 297 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KLIAYSSIAHMG+VT+GIF + G++GAM QM+SHG VS A+F C+G Sbjct: 298 KLIAYSSIAHMGFVTLGIFISFTLVRDFGNTDAARLGLQGAMVQMISHGFVSGAMFTCIG 357 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDR+HTR I YGG+V+ MP +A M F MAN GLPGTSGF+GEF+VI++ FQ Sbjct: 358 VLYDRMHTRCIADYGGVVNVMPWFATFAMFFYMANAGLPGTSGFVGEFMVILASFQKHPL 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 VA A +V++A Y+LWLY++V FG V LKD+++RE ++ A+ + G+Y Sbjct: 418 VAFGAGATLVITAAYTLWLYKRVFFGEVANTHVAALKDINIREASVLALFAIGVLVLGLY 477 Query: 469 PVPIRD 474 P P+ D Sbjct: 478 PKPLID 483 >gi|295311691|ref|YP_003587350.1| NADH dehydrogenase subunit 4 [Cucurbita pepo] gi|259156819|gb|ACV96680.1| NADH dehydrogenase subunit 4 [Cucurbita pepo] Length = 495 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 237/484 (48%), Positives = 323/484 (66%), Gaps = 7/484 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGR-RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS + P LG V+LF + R R + L S I F++SL +W FD + FQ Sbjct: 12 LSGLILCPVLGSIVLLF---IPNERIRLIRLIGLCASLITFLYSLVLWIQFDPSTAKFQF 68 Query: 65 IEYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E W+ Y ++ LG+DGIS+ V+LTTFL P CIL W ++ +EY+IAFL+ E Sbjct: 69 VESLRWLPYENINFSLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEF 128 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAI 182 ++I F LD+LLFY+FFE+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI Sbjct: 129 LMIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAI 188 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 +++ + T+ + + ++F Q ++WIAFF SFA+K+PM P H WLP AHV+APTA Sbjct: 189 LLILLQTGTTDL-QILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTA 247 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LAGI+LK+G YG +RF +P+FP A+ P I+ LS IAIIY SL ++ Q D+KK+ Sbjct: 248 GSVILAGILLKLGTYGFLRFSIPMFPEATLCATPFIYTLSAIAIIYTSLTTLRQIDLKKI 307 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHM VTIGIFS G+ G++ MLSHGLVSSALF CVGV+YDR TR + Y Sbjct: 308 IAYSSVAHMNLVTIGIFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYY 367 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGLV MP ++ + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A Sbjct: 368 GGLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAA 427 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 YSLWLY +VV G K + + + DL+ RE + P V V G++P D +S+ Sbjct: 428 YSLWLYNRVVSGNLKTDFLHKFSDLNGREVFIFIPFLVGVVRMGVHPKVFPDYMHTSVSN 487 Query: 483 IIEN 486 ++++ Sbjct: 488 LVQH 491 >gi|94309884|ref|YP_583094.1| NADH dehydrogenase subunit M [Cupriavidus metallidurans CH34] gi|93353736|gb|ABF07825.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Cupriavidus metallidurans CH34] Length = 488 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 228/485 (47%), Positives = 330/485 (68%), Gaps = 9/485 (1%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCGRRSFF--GVALGISTINFIFSLFVWSVFDKGRSSF 62 LS +LP F G+ V++F G R F +AL + ++F +L + FD ++ Sbjct: 3 LSFAIWLPIFFGLVVLMF----GSDRSKCFVRWMALFGAIVSFAVTLPLIFHFDTASAAM 58 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E WI+ F YHLGVDGIS+ VVLT F+T ++S+W+ I E EYM +FL+L Sbjct: 59 QFVEQATWIERFNIQYHLGVDGISMWFVVLTAFITVIVVISAWEVITERVAEYMASFLIL 118 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 +++G F SLD LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ L Sbjct: 119 SGLMVGVFSSLDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTL-V 177 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + K S I + +K + Q +++AFF +FA+K+PM+P HTWLP+AHV+APT Sbjct: 178 ALLYLYNKTGSFDILTWHQAKLTMNEQIAIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPT 237 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA IMLK+G YG +RF LP+ P AS Y AP I +SLIA+IY LV++VQ D+KK Sbjct: 238 GGSVVLAAIMLKLGAYGFLRFSLPIAPDASHYLAPFIITISLIAVIYIGLVALVQADMKK 297 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMG+VT+G F + G+EG + QM+SHG VS A+F C+GV+YDR+H+R I Sbjct: 298 LVAYSSIAHMGFVTLGFFIFNEIGIEGGIIQMISHGFVSGAMFLCIGVLYDRVHSRQIAD 357 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+V+ MP++A + + F MAN GLP TSGF+GEF+VI+ + + + +LA+ ++ A Sbjct: 358 YGGVVNVMPKFAALSVFFAMANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALIFGA 417 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 YSLW+ ++V+FG E V++L DL+ RE M+ +A++T++ G+YP P D + Sbjct: 418 AYSLWMVKRVIFGDIVHEHVRELVDLNKREFFMLGLLAIMTLYMGLYPKPFTDVMHASVV 477 Query: 482 SIIEN 486 +++ + Sbjct: 478 NLLSH 482 >gi|82702232|ref|YP_411798.1| NADH dehydrogenase subunit M [Nitrosospira multiformis ATCC 25196] gi|82410297|gb|ABB74406.1| NADH dehydrogenase subunit M [Nitrosospira multiformis ATCC 25196] Length = 495 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 228/489 (46%), Positives = 330/489 (67%), Gaps = 12/489 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGRSS 61 P LS+V +LP L +L + G R + +AL S F+ ++ +++ FD S+ Sbjct: 6 PLLSLVIWLPILAGVAVLAT---GGDRNAPLARMIALVGSIAGFLVAIPLYTSFDPSTST 62 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E + WI+ F YHLGVDGI++ L++L F TP +++ W+ I +YM AFL+ Sbjct: 63 MQFVESHVWIERFNVHYHLGVDGIAMPLILLNAFTTPLVVIAGWEVITRRVSQYMGAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + +V G F SLD +LFY+F+EASLIPMF+IIGVWGG R+YAA KFFLYT GS+ ML Sbjct: 123 MSGIVNGVFSSLDAILFYVFWEASLIPMFLIIGVWGGPNRVYAAIKFFLYTLLGSLLMLV 182 Query: 181 AIVVMCWEKKTS-SIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A + + + S SI++ + K P S+ Q ++IAF +FA+K+PM+P HTWLP+AHV Sbjct: 183 AFIYLYQVSEGSFSILEYH---KLPLSMASQILIFIAFLLAFAVKVPMWPVHTWLPDAHV 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APT GSV LA I+LKMGGYG +RF LP+ P AS A ++ LSLIA++Y LV++VQ Sbjct: 240 EAPTGGSVVLAAILLKMGGYGFLRFSLPILPDASHQLAGMMIALSLIAVVYIGLVALVQA 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KKLIAYSS+AHMG+VT+G F G+EGAM QM+SHG +S+A+F C+GV+YDRLH+R Sbjct: 300 DMKKLIAYSSVAHMGFVTLGFFLFNNYGLEGAMVQMVSHGFISAAMFLCIGVMYDRLHSR 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG+ H MP +A M+F MAN GLPGTSGF+GEF+VIM+ + + A LA+ + Sbjct: 360 QIVDYGGVAHRMPAFAAFFMLFAMANSGLPGTSGFVGEFMVIMASMKVNFWYAFLAATTL 419 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 + A Y+LW+Y++V+FG V+++KD+ RE ++ +AV + G+YP+P+ + Sbjct: 420 ITGAAYTLWMYKRVIFGAVVHPAVEEMKDIGAREILVLTVLAVAVLGMGLYPLPLTEVMH 479 Query: 478 VPLSSIIEN 486 + ++ + Sbjct: 480 TTVDDLLAH 488 >gi|38605710|sp|P27572|NU4M_WHEAT RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 Length = 495 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 233/483 (48%), Positives = 322/483 (66%), Gaps = 5/483 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + P LG ++LF R + L +S I F++SL +W FD + FQ + Sbjct: 12 LSGLILCPVLGSIILLFIP--NSSIRLIRLIGLCVSLITFLYSLVLWIQFDPSTAKFQFV 69 Query: 66 EYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E W+ Y + ++G+DG+S+ V+LTTFL P CIL W ++ +EY+IAFL+ E + Sbjct: 70 ESLRWLPYENIHLYMGIDGLSLFFVILTTFLIPICILVGWSGMRSFGKEYIIAFLICEFL 129 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIV 183 +I F LD+LLFY+FFE+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+ Sbjct: 130 MIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAIL 189 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 ++ + T+ + + ++F Q +WIAFF SFA+K+PM P H WLP AHV+APTAG Sbjct: 190 LILLQTGTTDL-QILLTTEFSERRQILLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAG 248 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI+LK+G YG +RF +P+FP A+ F P I+ LS IAIIY SL ++ Q D+KK+I Sbjct: 249 SVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKII 308 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHM VTIG+FS G+ G++ MLSHGLVSSALF CVGV+YDR TR + YG Sbjct: 309 AYSSVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYG 368 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GLV MP ++ + FT+ANM LPGTS FIGEFL+++ FQ ++ VA L + G++L A Y Sbjct: 369 GLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLRALGMILGAAY 428 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLWLY +VV G K + + + DL+ RE + P V V+ G+YP D +S++ Sbjct: 429 SLWLYNRVVSGNLKPDFLYKFSDLNGREVFIFLPFLVGVVWMGVYPKVFLDCMHTSVSNL 488 Query: 484 IEN 486 +++ Sbjct: 489 VQH 491 >gi|56478188|ref|YP_159777.1| NADH dehydrogenase subunit M [Aromatoleum aromaticum EbN1] gi|56314231|emb|CAI08876.1| NADH dehydrogenase I, chain M [Aromatoleum aromaticum EbN1] Length = 493 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 224/491 (45%), Positives = 334/491 (68%), Gaps = 12/491 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGR 59 LPFLS+ ++P LG ++L + G R + +A+ ++ F+ +L ++S FD Sbjct: 3 GLPFLSLAIWVPILGGLLVLAT---GSDRNAPLARFLAMLVAIAGFLVTLPLYSQFDAST 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S+ Q +E WI F +YHLGVDGIS+L ++L F+T +++ W+ I+E +YM AF Sbjct: 60 SAMQFVEILPWIPRFNINYHLGVDGISVLFILLNAFITIVVVIAGWQVIREKVAQYMAAF 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L++ ++ G F +LD +LFY FFEASLIP++++IG+WGG+ R+YAA KFFLYT GS+ M Sbjct: 120 LIMSGLMNGIFSALDAILFYTFFEASLIPLYLVIGIWGGTNRVYAAIKFFLYTLLGSLLM 179 Query: 179 LFAIVVMCWEKKTS-SIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L A++ + E S +I+D + + P ++ +W AF +FA+K+PM+P HTWLP+A Sbjct: 180 LVALLYLFMEAGGSFNILDWHQLPLGMGPQTLIFW---AFLIAFAVKVPMWPVHTWLPDA 236 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+APT GSV LA I LK+G YG +RF LP+ P A+Q AP++ LSLIA+IY V++V Sbjct: 237 HVEAPTGGSVVLAAIALKLGAYGFLRFSLPIVPDAAQAMAPMMIALSLIAVIYIGFVAIV 296 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTD+KKL+AYSSIAHMG+VT+G F G+EGA+ QM+SHG VS A+F C+GV+YDR+H Sbjct: 297 QTDMKKLVAYSSIAHMGFVTLGFFMFNTLGLEGALVQMVSHGFVSGAMFLCIGVLYDRMH 356 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR+I YGG+V MP++A M+F+MAN GLPGTSGF+GEF+V++ Q + VA A+ Sbjct: 357 TRNIADYGGVVKVMPKFAAFFMLFSMANAGLPGTSGFVGEFMVVLGAVQFNFWVAFGAAI 416 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 ++L A Y+LW+Y++V+FGV V QL D++ RE + +A+ + G+YP P + Sbjct: 417 TLILGAAYTLWMYKRVMFGVVGNSHVAQLNDINGREFAFLGVLALCVLAMGLYPYPFTEV 476 Query: 476 FSVPLSSIIEN 486 ++ ++ + Sbjct: 477 MHASVNELLRH 487 >gi|226348829|gb|ACO50733.1| NADH dehydrogenase subunit 4 [Micromonas pusilla CCMP1545] Length = 487 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 239/485 (49%), Positives = 325/485 (67%), Gaps = 5/485 (1%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 PFL + P +G V+ S VAL ++ +NF+ ++ +W VFD + FQ Sbjct: 3 PFLPFLVLCPLVGAGVVALLPR--KATTSIQAVALSVALVNFVVAVALWMVFDTTTAKFQ 60 Query: 64 MIEYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + W+ + LGVDGIS+L +VLTTFL P C+L W +I +EY IAFL+LE Sbjct: 61 FVSTLSWLPLGNMTVSLGVDGISLLFLVLTTFLVPVCLLVGWVNIHTKVKEYCIAFLLLE 120 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFA 181 +I F LD+LLFY+FFE+ L+PMFVIIGVWG ER I AAY+FFLYT GS+ ML A Sbjct: 121 VGMIAVFCLLDLLLFYVFFESVLLPMFVIIGVWGSRERKIRAAYQFFLYTLIGSVLMLVA 180 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 +++M ++ T+ + + +S F Q +W+AFF SFA+K+PM P H WLP AHV+APT Sbjct: 181 LLLMYFQVGTTD-LQVLLVSHFSDKRQVLLWLAFFASFAVKVPMVPVHIWLPEAHVEAPT 239 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LAGI+LK+G YG +RF +PLFP+AS YF P+++ LSLI IIYASL ++ Q D+KK Sbjct: 240 AGSVILAGILLKLGTYGFLRFSIPLFPMASLYFMPLVYTLSLIGIIYASLTTLRQIDLKK 299 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 +IAYSS+AHMG+VT+G+FS G+EGA+ MLSHG V+SALF C+G +YDR HTR + Sbjct: 300 IIAYSSVAHMGFVTLGLFSLNLQGIEGALILMLSHGFVASALFLCIGCVYDRTHTRVLQY 359 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGGLVH MP +A +VFTM N+ LPGTS F+GEFL+++ FQ + A LA+ G+VL Sbjct: 360 YGGLVHVMPLFAFFFLVFTMGNLSLPGTSSFVGEFLILVGTFQTNTLAATLAATGMVLGG 419 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 YS+WLY +VVFG K + DLS RE + P V ++ G +P DT + +S Sbjct: 420 AYSVWLYNRVVFGSLKPMYLASAADLSRREFWLFLPFVVAILWMGFFPGVFLDTMHLSVS 479 Query: 482 SIIEN 486 ++I++ Sbjct: 480 NLIQH 484 >gi|237746739|ref|ZP_04577219.1| NADH-quinone oxidoreductase subunit M [Oxalobacter formigenes HOxBLS] gi|229378090|gb|EEO28181.1| NADH-quinone oxidoreductase subunit M [Oxalobacter formigenes HOxBLS] Length = 497 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 230/487 (47%), Positives = 325/487 (66%), Gaps = 9/487 (1%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGRS 60 P LS+ + P F G+ ++L G R+ F +AL + +F+ +L + FD+ Sbjct: 10 PILSLAIWCPVFFGLLILL----TGKDERATFVRYLALLGAAASFVVTLPLAFHFDRSAH 65 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q +E + WI F Y LGVDGIS+ V+LT +T +L+ WK IQ +YM AFL Sbjct: 66 GLQFVERHSWIRLFRVEYALGVDGISMWFVLLTALITLIVVLAGWKVIQTQVAQYMGAFL 125 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L ++IG F + D LLFY+FFEA+LIPMFVIIG+WGG R+YAA+KFFLYTFFGS+ ML Sbjct: 126 ILSGLMIGVFSTFDGLLFYVFFEATLIPMFVIIGIWGGERRVYAAFKFFLYTFFGSLPML 185 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI+ + + + +I Y + P +Q W++IAF +FA+K+PM+P HTWLP+AHV+A Sbjct: 186 IAILYLYLQTNSFNIFVWYK-APLPLYVQIWLFIAFLTAFAVKVPMWPVHTWLPDAHVEA 244 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT GSV LA IMLK+G YG IRF LP+ P AS+Y A ++ LSL+A+ Y LV++VQ D+ Sbjct: 245 PTGGSVILAAIMLKLGAYGFIRFSLPILPDASRYLAWLMIVLSLVAVTYIGLVALVQKDM 304 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSSIAHMG+VT+G F V+GA+ QM+SHG VS+A+F CVGV+YDR+HTR I Sbjct: 305 KKLIAYSSIAHMGFVTLGFFLFENITVDGALVQMISHGFVSAAMFLCVGVLYDRMHTRHI 364 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGG+VH MPR+A ++F AN GLPGTSGF+GE +VI+ + VA + + ++L Sbjct: 365 GDYGGVVHVMPRFAAFFVLFAFANCGLPGTSGFVGEVMVILGAVSVNVWVAAVGALALIL 424 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 A Y+LW+ ++V++G + E+V LKD+ RE ++ + + GIYP + D V Sbjct: 425 GASYTLWMIKRVLYGPIESEEVASLKDIGAREFFILAVLGAFVLAIGIYPAWVTDVMQVS 484 Query: 480 LSSIIEN 486 +S ++ + Sbjct: 485 VSDLLAH 491 >gi|300113277|ref|YP_003759852.1| proton-translocating NADH-quinone oxidoreductase subunit M [Nitrosococcus watsonii C-113] gi|299539214|gb|ADJ27531.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus watsonii C-113] Length = 504 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 226/498 (45%), Positives = 326/498 (65%), Gaps = 17/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 L LS+V +LP LG F++L + G ++LGIS + F+ S +++ FD ++ Sbjct: 4 GLSLLSLVIWLPILGGFLVLAA---GNHVERVRWLSLGISGLTFVVSWSLYTGFDTSTAA 60 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q E W++ F YHLG+DGIS+ L++LTTF T +++ W+ I+ +YM +FL+ Sbjct: 61 MQFQEKLSWVETFDVYYHLGIDGISMPLIILTTFSTVLVVVAGWRVIEHKLAQYMASFLI 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +E ++ G F +LD +LFY FFE LIP+F+IIG+WGG RIYA KFFLYTF GS+F L Sbjct: 121 MEGLMNGVFAALDAVLFYFFFEGMLIPLFLIIGIWGGPNRIYATLKFFLYTFLGSVFFLL 180 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ + SI++ + + Q +++AF +FA+K+PM+P HTWLP+AHV+AP Sbjct: 181 ALLYLRSVTGGFSILEFHQV-PLDMQAQIGIFLAFLLAFAVKVPMWPVHTWLPDAHVEAP 239 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LA I LK+G YG +RF LP+ P AS +I LSLIA++Y LV++VQ D+K Sbjct: 240 TGGSVILAAITLKIGAYGFMRFSLPITPDASMALNWLIITLSLIAVVYIGLVAIVQEDLK 299 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KLIAYSSIAHMG+VT+G+F G G+EGA+ QM+SHGLVS+A+F CVG Sbjct: 300 KLIAYSSIAHMGFVTLGLFIAFAIFSQSIEGDGALLGLEGALVQMISHGLVSAAMFLCVG 359 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDRL TR I YGG+V+ MP +A +M++F MAN+GLPGTSGF+GEFLVI+ FQ Sbjct: 360 VLYDRLRTRLIKDYGGVVNRMPIFASLMVLFAMANVGLPGTSGFVGEFLVILGAFQADFW 419 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 A AS ++L A Y+LW+ ++VVFG +KV ++DL+ RE ++ +A + G++ Sbjct: 420 YAFFASMTLILGATYTLWMIKRVVFGDIANDKVATMEDLNSREFLVLGTLAAAVLLLGVW 479 Query: 469 PVPIRDTFSVPLSSIIEN 486 P P+ + L ++ Sbjct: 480 PQPLLEVMHTSLEHLLSQ 497 >gi|299066345|emb|CBJ37529.1| NADH-quinone oxidoreductase subunit M [Ralstonia solanacearum CMR15] Length = 488 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 225/483 (46%), Positives = 331/483 (68%), Gaps = 5/483 (1%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS +LP F GV V+ S G + ++L S ++F+ +L + + FDK ++ Q Sbjct: 3 LSFAIWLPIFFGVLVLASGSDRNPGYVRW--MSLIGSLVSFVITLPLITRFDKSTAAMQF 60 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI+ F SY+LGVDGIS+ VVLT F+T ++S+W+ I E +YM AFL+L Sbjct: 61 VEKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAQYMAAFLILSG 120 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F +LD LLFY+FFEA+LIPM++IIGVWGG R+YAA KFFLYT GS+ L A++ Sbjct: 121 LMIGVFAALDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAIKFFLYTLLGSLLTLVALL 180 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + + T I+ + + K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+APT G Sbjct: 181 YLYFHSGTFEILQWHQV-KLSMNEQILLFIAFFLAFAVKVPMWPVHTWLPDAHVEAPTGG 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LA IMLK+G YG +RF LP+ P AS + I +SLIA+IY LV++VQ D+KKL+ Sbjct: 240 SVVLAAIMLKLGAYGFLRFSLPIAPGASHSLSAFIIAISLIAVIYIGLVALVQADMKKLV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSIAHMG+VT+G F + GVEG + QM+SHG +S A+F C+GV+YDR+H+R I YG Sbjct: 300 AYSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIVDYG 359 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+V+ MP++A + + F MAN GLP TSGF+GEF+VI+ + + + +LA+ ++ A Y Sbjct: 360 GVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALIFGAAY 419 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLW+ ++V+FG + V +L+DL++RE M+ +A+ T++ G+YP P D + ++ Sbjct: 420 SLWMVKRVIFGDVAHKHVAELQDLNVREFFMLGVLAIATLYMGLYPKPFTDVMHASVVNL 479 Query: 484 IEN 486 + + Sbjct: 480 LTH 482 >gi|114321107|ref|YP_742790.1| proton-translocating NADH-quinone oxidoreductase, chain M [Alkalilimnicola ehrlichii MLHE-1] gi|114227501|gb|ABI57300.1| NADH dehydrogenase subunit M [Alkalilimnicola ehrlichii MLHE-1] Length = 501 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 219/497 (44%), Positives = 328/497 (65%), Gaps = 16/497 (3%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS++ +LP LG ++ R + ALGI+ + F+ SL ++ F+ G Q Sbjct: 6 LLSLLIWLPILGGVAVMVLGDSAPDRVRW--TALGIALVTFLASLPLYFGFEPGTHEMQF 63 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E W+ YHLGVDGIS+ L++LTTF T +++ W+ I+ +Y+ AFL++E Sbjct: 64 VEQREWVSALQVYYHLGVDGISMPLIILTTFCTLLVVIAGWEVIKYRPSQYLAAFLIMEG 123 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +++G F +LD +LFY+FFEA L+PMF+IIG+WGG+ RIYA KFFLYTF GS+ ML A++ Sbjct: 124 IMVGVFSALDAILFYVFFEAMLVPMFLIIGIWGGANRIYATIKFFLYTFLGSVLMLVAVI 183 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + + + I+D++ + + Q +++AF +FA+K+PM+P HTWLP+AHV+APT G Sbjct: 184 YLRLQAGSFGILDMHGLD-LGLTAQVLIFLAFLGAFAVKVPMWPVHTWLPDAHVEAPTGG 242 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LA IMLK+GGYG +RF LP+ P AS +I +SL+A+ Y LV+MVQ D+KKLI Sbjct: 243 SVILAAIMLKIGGYGFLRFSLPITPEASMTLDWLIILMSLVAVAYIGLVAMVQKDMKKLI 302 Query: 304 AYSSIAHMGYVTIG---IFSGMKSG---------VEGAMFQMLSHGLVSSALFFCVGVIY 351 AYSSIAHMG+VT+G IF M +G ++G M QM+SHG +S+A+F CVGV+Y Sbjct: 303 AYSSIAHMGFVTLGFFLIFQIMANGGGEQGGMLALQGGMVQMISHGFISAAMFLCVGVLY 362 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+H+R I YGG+++ MP + ++F MAN GLPGTSGF+GEF+VI++ FQ + A Sbjct: 363 DRMHSRQIADYGGVINTMPWFGAFFVLFAMANAGLPGTSGFVGEFMVILAAFQANFWYAF 422 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A +VL A YSLW+ ++V+FG E V +L+D++ RE ++ +A + + G++P P Sbjct: 423 VAGTTLVLGAAYSLWMVKRVIFGEVANENVAKLEDVNRREVLVLGLLAAMVLLLGLWPAP 482 Query: 472 IRDTFSVPLSSIIENYT 488 + + L ++ T Sbjct: 483 LVEVMEPSLLHLLNQVT 499 >gi|323398660|ref|YP_004222735.1| NADH dehydrogenase subunit 4 [Glaucocystis nostochinearum] gi|321401353|gb|ADW83107.1| NADH dehydrogenase subunit 4 [Glaucocystis nostochinearum] Length = 488 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 225/468 (48%), Positives = 319/468 (68%), Gaps = 13/468 (2%) Query: 12 LPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 +PFLG +I F ++ L + S F I + F SLF W FD FQ + +W Sbjct: 14 IPFLGAVIIFFINNDLFIKKLSLF-----IFFVTFQLSLFFWIFFDNSVYQFQFLNSINW 68 Query: 71 IDYFCSYH-LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAF 129 I Y+ +G+DGIS+ ++LTTFL P C+L+SW SI++NF+E++I FL+LES++I +F Sbjct: 69 IPSENFYYTVGIDGISLFFIILTTFLIPICVLASWDSIKKNFKEFVICFLILESILILSF 128 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 LD+LLFYIFFE+ LIPMF+IIG+WG ER I AAY FFLYT GS+FML I+++ +E Sbjct: 129 SVLDILLFYIFFESILIPMFLIIGIWGSRERKIRAAYYFFLYTLVGSLFMLLGILLIYFE 188 Query: 189 KKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T+ DL +S KF Q +W+AFF SF++K+PM PFH WLP AHV++PTAGS+ Sbjct: 189 TGTT---DLQTLSFIKFSEKRQLLLWLAFFASFSVKVPMIPFHIWLPEAHVESPTAGSLV 245 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAGI+LK+G YG +RF L LFP A+ YF P++F + +I I+Y SL ++ Q D+KK+IAYS Sbjct: 246 LAGILLKLGTYGFLRFSLNLFPWATIYFTPLVFTMGVIGIVYGSLTTLRQIDLKKIIAYS 305 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+AHM +V +GIF+ G+EG++ MLSHG+VS ALF +GV+YDR +R + Y GLV Sbjct: 306 SVAHMNFVVLGIFALNLQGIEGSILLMLSHGIVSPALFLAIGVLYDRYKSRILNYYSGLV 365 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP +A+ FT+AN+ LP TS F+GEFLV++ F+ + A +A+ G++L A YSLW Sbjct: 366 QVMPLFAIFFGFFTLANISLPTTSSFVGEFLVLLGAFRYNTIAAFIATLGIILGASYSLW 425 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 LY +V+FG K + DL+ RE + P+ +++++ GIYP P + Sbjct: 426 LYNRVIFGNIKVYYLSYFYDLNRRETFLFIPLVLISLWMGIYPTPFLN 473 >gi|291285969|ref|YP_003502785.1| proton-translocating NADH-quinone oxidoreductase, chain M [Denitrovibrio acetiphilus DSM 12809] gi|290883129|gb|ADD66829.1| proton-translocating NADH-quinone oxidoreductase, chain M [Denitrovibrio acetiphilus DSM 12809] Length = 499 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 225/490 (45%), Positives = 331/490 (67%), Gaps = 14/490 (2%) Query: 6 LSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LSI+ F P + +F+++F G +S A S I FI +L + + FDK Q Sbjct: 6 LSILIFFPLVAALFILIFFR----GGKSTMWAAFVASVIEFIITLPLMANFDKSNPGMQF 61 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI Y +GVDGISIL++ LTT LT IL S+ IQ+ +E+ IA LVLE+ Sbjct: 62 VEKLDWIPALGIQYSVGVDGISILMIFLTTLLTAIAILGSFTYIQKRQKEFYIAMLVLET 121 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++G FL+LD LFYI +EA LIPM++IIGVWGG RIYAA KFFLYTF GS+ M+ AI+ Sbjct: 122 GMVGVFLALDFFLFYILWEAMLIPMYLIIGVWGGKRRIYAAVKFFLYTFAGSVLMMIAII 181 Query: 184 VMCWE------KKTSSIIDLYAM-SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + ++ + T I+ + A + + S Q ++ AFF FAIK+PMFP HTWLP+AH Sbjct: 182 ALYFKHGSITGEYTFDILKITAQHASYGMSFQMLIFAAFFLGFAIKVPMFPLHTWLPDAH 241 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APTAGSV LAG++LKMG YG +RF LP+ PLAS P + +S+IAIIY +LV+MVQ Sbjct: 242 VEAPTAGSVILAGVLLKMGTYGMLRFCLPMTPLASIKLMPFVAVMSVIAIIYGALVAMVQ 301 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 DIKKL+AYSS++HMG+VT+GI++ +SG+EG + QM +HG+++ ALF +G++Y+R HT Sbjct: 302 KDIKKLVAYSSVSHMGFVTLGIYALNQSGIEGGILQMFNHGIITGALFLLIGLVYERTHT 361 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R+I YGG+ ++P +A + ++FTM ++GLP FIGEFLV++ FQ + A+LA+ G Sbjct: 362 REIADYGGIAKSVPVFATIFLIFTMGSIGLPSMGAFIGEFLVLVGAFQAFSDWAILAAIG 421 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 V+ SA+Y LW++++ VF S K ++LKD++LRE ++P+ ++ + G+YP + Sbjct: 422 VIFSAVYMLWVFQR-VFYQSLNTKWEKLKDMNLREVIYIFPLLIIVFWVGMYPETFTNYM 480 Query: 477 SVPLSSIIEN 486 + ++++ Sbjct: 481 HASVQHLVDH 490 >gi|71906600|ref|YP_284187.1| NADH dehydrogenase subunit M [Dechloromonas aromatica RCB] gi|71846221|gb|AAZ45717.1| NADH dehydrogenase subunit M [Dechloromonas aromatica RCB] Length = 494 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 219/493 (44%), Positives = 329/493 (66%), Gaps = 12/493 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGRSS 61 P LS+ ++P V+L + G R + L + + F+ ++ +W+ FD Sbjct: 5 PLLSLAIWIPIFAGLVVLTT---GGDRNAPLARMLSLVGAVAAFLITIPLWTGFDVANGG 61 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E WI F +YHLGVDGIS+L VVL F+T + + W+ IQ +Y AFL+ Sbjct: 62 MQFVELKTWIPRFNINYHLGVDGISMLFVVLNAFITIIVVAAGWEVIQNKVAQYNAAFLI 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + ++ G F SLD +LFY+FFEASLIP+++IIGVWGG R+YAA+KFFLYT FGS+ L Sbjct: 122 MSGLMNGIFTSLDGVLFYVFFEASLIPLYLIIGVWGGPNRVYAAFKFFLYTLFGSLLFLL 181 Query: 181 AIVVMCWEKKTS-SIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A++ + + S SI++ + K P ++ Q W+++AF +FA+K+PM+P HTWLP+AHV Sbjct: 182 ALMYLFIQSGGSFSILEWH---KLPIALGPQIWLFLAFLIAFAVKVPMWPVHTWLPDAHV 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APT GS+ LA I LK+G YG +RF LP+ P AS + ++ LSLIA++Y V++VQ Sbjct: 239 EAPTGGSIVLAAIALKLGAYGFLRFSLPIAPDASHELSGLVVALSLIAVVYIGFVALVQE 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KKL+AYSSIAHMG+VT+G F G+EGA+ QM+SHG VS A+FFC+GV+YDR+H+R Sbjct: 299 DMKKLVAYSSIAHMGFVTLGFFMFSAMGIEGALVQMVSHGFVSGAMFFCIGVMYDRVHSR 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG+V+ MP++A + M+FTMAN GLP TSGF+GEF+VI+ + + VA A+ + Sbjct: 359 QIADYGGVVNTMPKFAALFMLFTMANSGLPATSGFVGEFMVILGAVKFNFWVAFAAASSM 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 ++ A YSLW+Y++V+FG V +L D+++RE ++ +AV T++ G+YP P + Sbjct: 419 IVGAAYSLWMYKRVIFGDVANHHVAELSDINMREFAILAVLAVATLWMGVYPQPFTEVMH 478 Query: 478 VPLSSIIENYTLK 490 ++ ++ + + Sbjct: 479 ASVNDLLHHVAIS 491 >gi|84872473|gb|ABC67282.1| NADH dehydrogenase subunit 4 [Sphagnum fallax] Length = 418 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 217/403 (53%), Positives = 290/403 (71%), Gaps = 3/403 (0%) Query: 69 HWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 W+ Y +++G+DGIS+ VVLTTFL P CIL SI+ REYMIAFL+ ES +I Sbjct: 3 RWLPYPNIHFYIGIDGISLFFVVLTTFLIPICILVGRSSIKSYKREYMIAFLICESFMIA 62 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMC 186 F LD+LLFY+FFE+ LIPM +IIGVWG +R I AAY+FFLYT GS+FML AI+ + Sbjct: 63 VFCMLDLLLFYVFFESVLIPMSIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIP 122 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + S+ + + ++F Q +WIAFF SF++K+PM PFH WLP AHV+APTAGSV Sbjct: 123 -SQTGSTDLQILLTTEFSERRQILLWIAFFASFSVKVPMIPFHIWLPEAHVEAPTAGSVI 181 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAGI+LK+G YG +RF +P+FP A+ YF P ++ LS+IAIIY SL ++ Q D+KK+IAYS Sbjct: 182 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFVYALSVIAIIYTSLTTIRQIDLKKIIAYS 241 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+AHM +VTIG+FS G+EG++ MLSHGLVSSALF CVG +YDR TR + YGGLV Sbjct: 242 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRLVKYYGGLV 301 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP ++ + + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A YSLW Sbjct: 302 STMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 LY +V+FG K + +Q+ DL+ RE + P V ++ G+YP Sbjct: 362 LYNRVIFGNFKPKFLQKFSDLNRREVLIFLPFVVGIIWMGVYP 404 >gi|118602287|ref|YP_903502.1| proton-translocating NADH-quinone oxidoreductase, chain M [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567226|gb|ABL02031.1| NADH dehydrogenase subunit M [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 501 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 225/499 (45%), Positives = 330/499 (66%), Gaps = 17/499 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGR-RSFFGVALGISTINFIFSLFVWSVFDKGR 59 M LS++ +LP +++F +G R + V++ IS + F+ SL +++ FD Sbjct: 1 MQNSLLSLLIWLPIFSSVLVIF---IGNNRVNTARWVSVIISILVFMISLSLYTGFDSST 57 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q +E WI YH+GVDGIS+ L++LTTF T I++ W+ I + YM AF Sbjct: 58 HLMQFVEKESWILQLNIHYHIGVDGISMPLIILTTFSTILVIVAGWEVIAKRCAHYMAAF 117 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L++E ++IG F SLD +LFY F+EASLIPM +IIG+WGG R+YA+ KFFLYTF GS+FM Sbjct: 118 LMMEGLIIGVFSSLDAILFYAFWEASLIPMLLIIGIWGGDNRVYASIKFFLYTFLGSVFM 177 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L + + M + + I+D++ + + Q +++ AFF +FA+K+PMFP HTWLP+AHVQ Sbjct: 178 LVSFIYMHNKGGSFLILDMHNL-ELSLEEQSYIFWAFFMAFAVKVPMFPVHTWLPDAHVQ 236 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV LA IMLKMGGYG RF LP+ P AS F+ +I LSLIAI+Y V++VQ D Sbjct: 237 APTGGSVILAAIMLKMGGYGFFRFSLPITPDASLEFSEIIIVLSLIAIVYIGFVALVQRD 296 Query: 299 IKKLIAYSSIAHMGYVTIGIFS-----------GMKSGVEGAMFQMLSHGLVSSALFFCV 347 +KKLIAYSSI+HMG+VT+G+F+ G G+EGAM QM+SHG +S+A+F V Sbjct: 297 MKKLIAYSSISHMGFVTLGVFTLFLTYKPDTIEGALLGLEGAMVQMISHGFISAAMFLVV 356 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 GV+YDRLH+R+I YGG++++MP++ ++F MAN+GLPGTSGF+GEF+VI+ Q + Sbjct: 357 GVLYDRLHSREISTYGGVINSMPKFTGFALLFAMANVGLPGTSGFVGEFMVILGAIQANI 416 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 VL + +++ A Y+LW+ ++V +GV V LKD++ RE M+ + V + G+ Sbjct: 417 WYGVLVASTLIVGAAYTLWMVKRVFWGVVSNPAVATLKDINAREFSMLAILVVAVLIMGL 476 Query: 468 YPVPIRDTFSVPLSSIIEN 486 YP P+ + + + ++ Sbjct: 477 YPQPVLELMYISIEHLLHQ 495 >gi|187929281|ref|YP_001899768.1| NADH dehydrogenase subunit M [Ralstonia pickettii 12J] gi|187726171|gb|ACD27336.1| proton-translocating NADH-quinone oxidoreductase, chain M [Ralstonia pickettii 12J] Length = 488 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 225/483 (46%), Positives = 331/483 (68%), Gaps = 5/483 (1%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS +LP F GV V+ S G + ++L S I+F+ +L + + FDK ++ Q Sbjct: 3 LSFAIWLPIFFGVLVLASGSDRNPGYVRW--MSLIGSVISFVMTLPLITRFDKTTAAMQF 60 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI+ F SY+LGVDGIS+ VVLT F+T ++++W+ I E +YM AFL+L Sbjct: 61 VEKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVIAAWEVITERVAQYMAAFLILSG 120 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F SLD LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ L A++ Sbjct: 121 LMIGVFASLDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLVALL 180 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + + T I+ + + K + Q +++AFF +FA+K+PM+P HTWLP+AHV+APT G Sbjct: 181 YLYFHSGTFEILQWHQV-KLSMNEQVLIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGG 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LA IMLK+G YG +RF LP+ P AS + I +SL+A+IY LV++VQ D+KKL+ Sbjct: 240 SVVLAAIMLKLGAYGFLRFSLPIAPDASHSLSAFIIAISLVAVIYIGLVALVQADMKKLV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSIAHMG+VT+G F + GVEG + QM+SHG +S A+F C+GV+YDR+H+R I YG Sbjct: 300 AYSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYG 359 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+V+ MP++A + + F MAN GLP TSGF+GEF+VI+ + + + +LA+ ++ A Y Sbjct: 360 GVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAY 419 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLW+ ++V+FG + V +LKDL+ RE M+ +A+ T++ G+YP P D + ++ Sbjct: 420 SLWMVKRVIFGDVTHKHVAELKDLNCREFFMLGVLAIATLYMGLYPKPFTDVMHASVVNL 479 Query: 484 IEN 486 + + Sbjct: 480 LTH 482 >gi|319787431|ref|YP_004146906.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pseudoxanthomonas suwonensis 11-1] gi|317465943|gb|ADV27675.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pseudoxanthomonas suwonensis 11-1] Length = 501 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 230/486 (47%), Positives = 326/486 (67%), Gaps = 23/486 (4%) Query: 5 FLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS++ +LP +G V+ R S ALG++ + + S+ + + FD Q Sbjct: 5 LLSVLIWLPIIGGALVLALGDRPAAARWS----ALGVALLTLVLSVGLVTGFDYAAPGLQ 60 Query: 64 MIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E + WI Y Y+LG DGI++ L++LTT +TP ++ +W+SIQ+ +Y+ AFL+LE Sbjct: 61 FVEAHAWIPAYDIHYNLGADGIAVALILLTTIVTPLALIGAWESIQKRVNQYVAAFLILE 120 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + +G F + D +LFY+FFEA LIPMF+IIG+WGG RIYAA KFFLYTF GS+ ML A+ Sbjct: 121 GVTVGIFAATDAILFYVFFEAMLIPMFLIIGIWGGPRRIYAAMKFFLYTFLGSVLMLVAL 180 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + + + DLYA+ P S Q W++ AF +FA+K+PMFP HTWLP+AHV+AP Sbjct: 181 IYLYLKGGSFQLADLYAL---PLSAKEQTWIFFAFAIAFAVKVPMFPVHTWLPDAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA I LK+GGYG +RF LP+ P A +A +I LSLIA+IY LV++VQ D+K Sbjct: 238 TAGSVILAAIALKIGGYGFLRFNLPITPDAGHEWAWLIIALSLIAVIYVGLVALVQDDMK 297 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KL+AYSS+AHMG+VT+G F + G++GAM QM+SHG VS A+F C+G Sbjct: 298 KLVAYSSVAHMGFVTLGSFIAFTLVRDYGSVDAARLGLQGAMVQMISHGFVSGAMFSCIG 357 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDR+HTR I YGG+ + MP +A M+F MAN GLPGTSGF+GEF++I++ FQ Sbjct: 358 VLYDRMHTRRIADYGGVANVMPWFATFSMLFFMANAGLPGTSGFVGEFMIILASFQKHPV 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 +AVLA+ ++ +A Y+LWLYR+V FG V +LKD++ RE ++ A T+ FG++ Sbjct: 418 IAVLAATTLITAAAYTLWLYRRVFFGEVANAHVAELKDINAREVLVLGVFAAGTLLFGLW 477 Query: 469 PVPIRD 474 P P+ D Sbjct: 478 PKPLTD 483 >gi|14272190|emb|CAC39487.1| NADH dehydrogenase subunit 4 [Riccia fluitans] Length = 418 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 215/403 (53%), Positives = 292/403 (72%), Gaps = 3/403 (0%) Query: 69 HWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 W+ Y ++++G+DGIS+ V+LTTFLTP CIL + S++ +EYMIAF + ES +I Sbjct: 3 RWLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIA 62 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMC 186 F SLD+L+FY+FFE+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+ + Sbjct: 63 VFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIF 122 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ T+ + + ++F Q +WIAFF SF++K+PM P H WLP AHV+APTAGSV Sbjct: 123 FQTGTTD-LQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAGI+LK+G YG +RF +P+FP A+ YF P I+ LS+IAIIY SL ++ Q D+KK+IAYS Sbjct: 182 LAGILLKLGTYGFLRFSIPIFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 241 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+AHM +VTIG+FS G+EG++ MLSHGLVSSALF CVG +YDR TR + YGGLV Sbjct: 242 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 301 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP ++ + + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A YSLW Sbjct: 302 STMPIFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 LY +VVFG K + + DL+ RE + P V ++ G+YP Sbjct: 362 LYNRVVFGNFKPNFILKFSDLNRREVLIFLPFIVGVIWMGVYP 404 >gi|15131109|emb|CAC48230.1| NADH dehydrogenase subunit 4 [Timmia megapolitana subsp. bavarica] Length = 415 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 215/403 (53%), Positives = 291/403 (72%), Gaps = 3/403 (0%) Query: 69 HWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 W+ Y ++++G+DGIS+ VVLTTFL P CIL W SI+ +EYMIAFL+ ES +I Sbjct: 3 RWLPYSNINFYIGIDGISLFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLICESFMIA 62 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMC 186 F LD+LLFY+FFE+ IPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+ + Sbjct: 63 VFCMLDLLLFYVFFESVSIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIF 122 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ T+ + + ++F Q +WIAFF SF++K+PM P H WLP AHV+APTAGSV Sbjct: 123 FQTGTTDL-QILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAGI+LK+G YG +RF +P+FP A+ YF P I+ LS+IAIIY SL ++ Q D+KK+IAY Sbjct: 182 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYP 241 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+AHM +VTIG+FS G+EG++ MLSHG VSSALF CVGV+YDR TR + YGGLV Sbjct: 242 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVSSALFLCVGVLYDRHKTRLVKYYGGLV 301 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP ++ + + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A YSLW Sbjct: 302 STMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Y +V+FG K + +Q+ DL+ RE + +P V ++ G+YP Sbjct: 362 PYNRVIFGNFKPKFLQKFSDLNRREVLIFFPFIVGVIWMGVYP 404 >gi|14272192|emb|CAC39486.1| NADH dehydrogenase subunit 4 [Lunularia cruciata] Length = 418 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 215/403 (53%), Positives = 291/403 (72%), Gaps = 3/403 (0%) Query: 69 HWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 W+ Y ++++G+DGIS+ V+LTTFLTP CIL + S++ +EYMIAF + ES +I Sbjct: 3 RWLPYSNINFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLIA 62 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMC 186 F SLD+L+FY+FFE+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+ + Sbjct: 63 VFCSLDLLIFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIF 122 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ T+ + + ++F Q +WIAFF SF++K+PM P H WLP AHV+APTAGSV Sbjct: 123 FQTGTTD-LQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAGI+LK+G YG +RF +P+FP A+ YF P I+ LS+IAIIY SL ++ Q D+KK+IAYS Sbjct: 182 LAGILLKLGTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYS 241 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+AHM +VTIG+FS G+EG++ MLSHGLVSSALF CVG +YDR TR + YGGLV Sbjct: 242 SVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLV 301 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP + + + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A YSLW Sbjct: 302 STMPIFPTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 LY +VVFG K + + DL+ RE + P V ++ G+YP Sbjct: 362 LYNRVVFGNFKPNFILKFSDLNRREVLIFLPFIVGVIWMGVYP 404 >gi|194289171|ref|YP_002005078.1| NADH dehydrogenase subunit m [Cupriavidus taiwanensis LMG 19424] gi|193223006|emb|CAQ69011.1| NADH:ubiquinone oxidoreductase complex I, chain M [Cupriavidus taiwanensis LMG 19424] Length = 488 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 223/486 (45%), Positives = 331/486 (68%), Gaps = 11/486 (2%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCG---RRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 LS +LP F G+ ++ F S G S FG S +F+ +L + FD+ ++ Sbjct: 3 LSFSIWLPVFFGLLILAFGSDRSPGFVRWMSLFG-----SIASFVVTLPLVFHFDRATAA 57 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E WI+ F Y LGVDG+S+ VVLT F+T ++S+W+ I E EYM +FL+ Sbjct: 58 MQFVEKASWIERFNIHYLLGVDGLSMWFVVLTAFITVIVVISAWEVITERVAEYMASFLI 117 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L +++G F +LD +LFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ L Sbjct: 118 LSGLMVGVFCALDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLV 177 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ + + T I+ + +K + Q +++AFF +FA+K+PM+P HTWLP+AHV+AP Sbjct: 178 ALLYLYNKTGTFDILQ-WHQAKLSMNEQIALFLAFFVAFAVKVPMWPVHTWLPDAHVEAP 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LA IMLK+G YG +RF LP+ P AS Y AP I +SLIA+IY LV++VQ D+K Sbjct: 237 TGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHYLAPFIITISLIAVIYIGLVALVQADMK 296 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KL+AYSSIAHMG+VT+G F GVEG + QM+SHG +S A+F C+GV+YDR+H+R I Sbjct: 297 KLVAYSSIAHMGFVTLGFFIFSDIGVEGGIIQMISHGFISGAMFLCIGVLYDRVHSRQIA 356 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGG+V+ MP++A + + F MAN GLP TSGF+GEF+VI+ + + + +LA+ ++L Sbjct: 357 DYGGVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALILG 416 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A YSLW+ ++V+FG + V++L DL+ RE M+ +A++T++ G++P P D + Sbjct: 417 AAYSLWMVKRVIFGDVVHQHVRELADLNKREFVMLGLLAIMTLYMGLHPKPFTDVMHPSV 476 Query: 481 SSIIEN 486 +++++ Sbjct: 477 VNLLQH 482 >gi|119897699|ref|YP_932912.1| NADH dehydrogenase subunit M [Azoarcus sp. BH72] gi|119670112|emb|CAL94025.1| putative NADH-ubiquinone oxidoreductase, chain M [Azoarcus sp. BH72] Length = 493 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 218/491 (44%), Positives = 332/491 (67%), Gaps = 12/491 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGR 59 ++P+LS+ ++P +G ++L + G R + +AL S F+ +L +++ FD Sbjct: 3 DIPYLSLAIWVPIIGGLLVLAT---GSDRNAPMARVLALLASIAGFVVTLPLYTGFDVSS 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 ++ Q +E W+ F +YHLGVDGIS+L V+L F+T +++ W+ I+E +YM AF Sbjct: 60 AAMQFVEIAPWVPRFNINYHLGVDGISVLFVLLNAFITIMVVIAGWQVIEEKVAQYMAAF 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L++ ++ G F +LD +LFY+FFEASLIP++++IG+WGG R+YAA KFFLYT GS+ M Sbjct: 120 LIMSGLMNGIFSALDGILFYVFFEASLIPLYLVIGIWGGPNRVYAAIKFFLYTLLGSLLM 179 Query: 179 LFAIVVMCWEKKTS-SIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L A++ + E S SI+D + + P +I Q ++ AF +F +K+PM+P HTWLP+A Sbjct: 180 LIALLYLYMEAGGSFSILDWH---QLPLAIEPQTLIFFAFLIAFGVKVPMWPVHTWLPDA 236 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+APT GSV LA I LK+G YG +RF LP+ P A+Q APV+ LSLIA++Y V++V Sbjct: 237 HVEAPTGGSVVLAAIGLKLGAYGFLRFSLPILPDAAQQLAPVVITLSLIAVVYIGFVALV 296 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KKL+AYSSI+HMG+VT+G F VEGA+ QM+SHG VS A+F C+GV+YDR+H Sbjct: 297 QADMKKLVAYSSISHMGFVTLGFFMFNPLAVEGALVQMISHGFVSGAMFLCIGVLYDRMH 356 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 +R I YGG+VH+MP++A M+F MAN GLP TSGF+GEF+V++ Q + +A LA+ Sbjct: 357 SRQIADYGGVVHSMPKFAAFFMLFAMANAGLPATSGFVGEFMVVLGAVQYNFWIAFLAAT 416 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 ++L A Y+LW+Y++VVFG + V +L+D++ RE + +A + G+YP P + Sbjct: 417 TLILGAAYTLWMYKRVVFGAIGNKHVAELEDINAREFAFLGILAACVLAMGLYPFPFTEV 476 Query: 476 FSVPLSSIIEN 486 ++ ++ + Sbjct: 477 MHASVNELLRH 487 >gi|198284334|ref|YP_002220655.1| proton-translocating NADH-quinone oxidoreductase subunit M [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667047|ref|YP_002426996.1| NADH-quinone oxidoreductase, M subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248855|gb|ACH84448.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519260|gb|ACK79846.1| NADH-quinone oxidoreductase, M subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 494 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 226/489 (46%), Positives = 330/489 (67%), Gaps = 5/489 (1%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGR-RSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P LS ++P +G ++L +G R + +AL S + F ++ +++ FD ++ Sbjct: 5 PLLSYAIWVPIIGGLLVL---AVGDRRPEAARWLALVASLVAFAVTIPLFTGFDTHTAAM 61 Query: 63 QMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q E WI YHLG+DGIS+ ++LT+FLT ++SSWK++QE ++M AFL++ Sbjct: 62 QYSERVAWIPSLNIFYHLGIDGISLWFILLTSFLTVLVVISSWKNVQERVAQFMAAFLIM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 E ++IG F +LD +LFY+F+EA LIPMF+IIGVWGG R+YA KFFLYTF GS+ ML A Sbjct: 122 EGLMIGVFCALDAILFYVFWEAMLIPMFLIIGVWGGPRRVYATIKFFLYTFLGSVLMLVA 181 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ + + S + + + S Q +++AFF +FA+KIPM+P HTWLP+AHV+APT Sbjct: 182 LLYLYFHSGDSFSLLEFQKTPLGMSAQTLIFLAFFFAFAVKIPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA +MLKMG YG +R LP+ P AS A ++ LSLIAIIY +LV++VQ D+KK Sbjct: 242 GGSVILAAVMLKMGAYGFLRLSLPIVPDASHKLAWLMIVLSLIAIIYVALVAIVQEDMKK 301 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSSIAHMG+VT+G F +EG + QMLSHG VS+A+F CVGV+YDR+HTR I A Sbjct: 302 LIAYSSIAHMGFVTLGFFVFNSVAIEGGIIQMLSHGFVSAAMFLCVGVLYDRMHTRSIKA 361 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGG+ + MP +A +MM+F M N+GLPGTSGF+GEF+V++ +Q + +A+LA+ ++ A Sbjct: 362 YGGVANVMPVFAALMMLFAMGNVGLPGTSGFVGEFMVVLGTYQVNPWLAILAATSLITGA 421 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+LWL+++V+FG +V +LKDL RE ++ +A T+ G++P P D + Sbjct: 422 GYTLWLFKRVIFGSVVQPEVARLKDLDGREVLVLGTLAAFTLLLGLWPAPFLDIVHSSVQ 481 Query: 482 SIIENYTLK 490 ++ +L Sbjct: 482 HLVTQVSLS 490 >gi|237748879|ref|ZP_04579359.1| NADH-quinone oxidoreductase subunit M [Oxalobacter formigenes OXCC13] gi|229380241|gb|EEO30332.1| NADH-quinone oxidoreductase subunit M [Oxalobacter formigenes OXCC13] Length = 497 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 222/485 (45%), Positives = 321/485 (66%), Gaps = 9/485 (1%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGRS 60 P LS+ + P F G+ V++ G R+ F L + + ++F +L + FD+ Sbjct: 10 PVLSLAIWCPVFFGLLVLV----TGKDERALFVRWLSLLGAVVSFAVTLPLAIHFDRSAH 65 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q +E + WI F Y LGVDGIS+ V+L+ +T +++ W IQ+ +YM AFL Sbjct: 66 GMQFVERHSWIKLFHVEYALGVDGISMWFVLLSALITLIVVIAGWNVIQKQIAQYMGAFL 125 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L ++IG F + D LLFY+FFEA+LIPMFVIIGVWGG R+YAA+KFFLYTFFGS+ ML Sbjct: 126 ILSGLMIGVFSTFDGLLFYVFFEATLIPMFVIIGVWGGERRVYAAFKFFLYTFFGSLPML 185 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 I+ + + + +I Y + P ++Q W++IAF +FA+K+PM+P HTWLP+AHV+A Sbjct: 186 IGILYLYLQTNSFNIFTWYN-APIPLNVQIWLFIAFLTAFAVKVPMWPVHTWLPDAHVEA 244 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT GSV LA +MLK+G YG IRF LP+ P AS+ A ++ LSLIA+IY LV++VQ D+ Sbjct: 245 PTGGSVILAALMLKLGAYGFIRFSLPILPDASRTLAWLMIALSLIAVIYIGLVALVQKDM 304 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSSIAHMG+VT+G F V+GA+ QM+SHG VS+A+F CVGV+YDR+HTR I Sbjct: 305 KKLIAYSSIAHMGFVTLGFFLFENITVDGALVQMISHGFVSAAMFLCVGVLYDRMHTRQI 364 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGG+ MPR+A ++F +AN GLPGTSGF+GE +VI+ + + + + ++L Sbjct: 365 ADYGGVAFVMPRFAAFFVLFALANCGLPGTSGFVGEVMVILGAVKVNVWIGAAGALALIL 424 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 A Y+LW+ ++V++G + E+V LKD+S RE M+ + + GIYP + D Sbjct: 425 GAAYTLWMIKRVLYGPIENEQVAALKDISAREFFMLVVLGAFVLAIGIYPAWVTDVMQTS 484 Query: 480 LSSII 484 ++ ++ Sbjct: 485 VADLL 489 >gi|121998532|ref|YP_001003319.1| proton-translocating NADH-quinone oxidoreductase subunit M [Halorhodospira halophila SL1] gi|121589937|gb|ABM62517.1| NADH dehydrogenase subunit M [Halorhodospira halophila SL1] Length = 505 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 228/481 (47%), Positives = 319/481 (66%), Gaps = 23/481 (4%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV---ALGISTINFIFSLFVWSVFDKGRSS 61 LS++ +LP LG ++ L GRRS V A G++ + F+FSL +W F+ G Sbjct: 6 LLSLIIWLPILG-----GAAVLAVGRRSEVAVRELATGVAGLTFLFSLVLWFAFEPG-GG 59 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E W+ F YHLGVDGIS+ LVVLT F T +++ I +YM AFLV Sbjct: 60 MQFVEKRDWVPTFDIHYHLGVDGISMPLVVLTAFATLLVVIAGRSGITYRPAQYMGAFLV 119 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +E ++IG F +LD +LFY+F+EA L+PMF++IG+WGG+ RIYA KFFLYTF GS+ ML Sbjct: 120 MEGLMIGVFAALDAILFYVFWEAMLVPMFLLIGMWGGANRIYATIKFFLYTFLGSVLMLI 179 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A + + WE + ++D + +S Q +++A +FA+K+PM+P HTWLP+AH +AP Sbjct: 180 AFLYLRWEAGSFGVLDFHGLS-IGLEAQILIFLALLAAFAVKVPMWPVHTWLPDAHTEAP 238 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LA I LKMG YG +RF LP+ P ASQ A ++ +SLIAI+Y LV+MVQ D+K Sbjct: 239 TGGSVILAAITLKMGAYGFLRFALPIAPEASQELAWLVIAMSLIAIVYIGLVAMVQEDMK 298 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGV-----EGAMF-------QMLSHGLVSSALFFCVG 348 +LIAYSSIAHMG+ T+G F ++G+ +GA+ Q++SHG +S+ALF CVG Sbjct: 299 RLIAYSSIAHMGFATLGFFVIFQAGLGAEAGDGALMAMTGGYVQLISHGFISAALFLCVG 358 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDR+HTR+I YGG+++ MP + + +VF MAN GLPGTSGF+GEFLVI+ +Q S Sbjct: 359 VLYDRMHTRNIADYGGVINRMPIFGALFVVFAMANAGLPGTSGFVGEFLVILGSYQASFW 418 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 A +A +++ A YSLWL ++VVFG E+V L DL RE ++ +AVL + G+Y Sbjct: 419 YAAIAGLTLIVGAAYSLWLVKRVVFGPVANERVAALNDLDRREFLLLGVLAVLVIGVGVY 478 Query: 469 P 469 P Sbjct: 479 P 479 >gi|241663472|ref|YP_002981832.1| NADH dehydrogenase subunit M [Ralstonia pickettii 12D] gi|240865499|gb|ACS63160.1| proton-translocating NADH-quinone oxidoreductase, chain M [Ralstonia pickettii 12D] Length = 488 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 224/483 (46%), Positives = 331/483 (68%), Gaps = 5/483 (1%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS +LP F GV V+ S G + ++L S I+F+ +L + + FDK ++ Q Sbjct: 3 LSFAIWLPIFFGVLVLASGSDRNPGYVRW--MSLIGSLISFVITLPLITRFDKTTAAMQF 60 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI+ F SY+LGVDGIS+ VVLT F+T ++++W+ I E +YM AF++L Sbjct: 61 VEKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVIAAWEVITERVAQYMAAFMILSG 120 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F SLD LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ L A++ Sbjct: 121 LMIGVFASLDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLVALL 180 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + + T I+ + + K + Q +++AFF +FA+K+PM+P HTWLP+AHV+APT G Sbjct: 181 YLYFHSGTFEILQWHQV-KLSMNEQILIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGG 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LA IMLK+G YG +RF LP+ P AS + I +SL+A+IY LV++VQ D+KKL+ Sbjct: 240 SVVLAAIMLKLGAYGFLRFSLPIAPDASHSLSAFIIAISLVAVIYIGLVALVQADMKKLV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSIAHMG+VT+G F + GVEG + QM+SHG +S A+F C+GV+YDR+H+R I YG Sbjct: 300 AYSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYG 359 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+V+ MP++A + + F MAN GLP TSGF+GEF+VI+ + + + +LA+ ++ A Y Sbjct: 360 GVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAY 419 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLW+ ++V+FG + V +LKDL+ RE M+ +A+ T++ G+YP P D + ++ Sbjct: 420 SLWMVKRVIFGDVTHKHVAELKDLNCREFFMLGVLAIATLYMGLYPKPFTDVMHASVVNL 479 Query: 484 IEN 486 + + Sbjct: 480 LTH 482 >gi|113867082|ref|YP_725571.1| NADH dehydrogenase subunit M [Ralstonia eutropha H16] gi|113525858|emb|CAJ92203.1| NADH dehydrogenase chain M [Ralstonia eutropha H16] Length = 488 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 224/486 (46%), Positives = 329/486 (67%), Gaps = 11/486 (2%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCG---RRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 LS +LP F G+ ++ F S G S FG S +F+ +L + FD+ ++ Sbjct: 3 LSFSIWLPVFFGLLILAFGSDRSPGFVRWMSLFG-----SIASFVVTLPLVFGFDRASAA 57 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E WI+ F +Y LGVDGIS+ VVLT F+T ++S+W+ I E EYM +FL+ Sbjct: 58 MQFVEKASWIERFNINYLLGVDGISMWFVVLTAFITVIVVISAWEVITERVAEYMASFLI 117 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L +++G F +LD +LFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ L Sbjct: 118 LSGLMVGVFCTLDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLAGSLLTLI 177 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ + + T I+ + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+AP Sbjct: 178 ALLYLYNKTGTFDILQ-WHQAKLSMNEQIALFIAFFVAFAVKVPMWPVHTWLPDAHVEAP 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LA IMLK+G YG +RF LP+ P AS Y AP I +SLIA+IY LV++VQ D+K Sbjct: 237 TGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHYLAPFIITISLIAVIYIGLVALVQADMK 296 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KL+AYSSIAHMG+VT+G F GVEG + QM+SHG +S A+F C+GV+YDR+H+R I Sbjct: 297 KLVAYSSIAHMGFVTLGFFIFSDIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIA 356 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGG+V+ MP++A + + F MAN GLP TSGF+GEF+VI+ + + +LA+ ++ Sbjct: 357 DYGGVVNTMPKFAALAVFFAMANCGLPATSGFVGEFMVILGAVKFDFWIGLLAATALIFG 416 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A YSLW+ ++V+FG + V++L DL+ RE M+ +A++T++ G++P P D + Sbjct: 417 AAYSLWMVKRVIFGDIVHQHVRELVDLNKREFVMLGLLAIMTLYMGLHPKPFTDVMHASV 476 Query: 481 SSIIEN 486 +++ + Sbjct: 477 VNLLSH 482 >gi|312796889|ref|YP_004029811.1| NADH-quinone oxidoreductase chain M [Burkholderia rhizoxinica HKI 454] gi|312168664|emb|CBW75667.1| NADH-quinone oxidoreductase chain M (EC 1.6.5.3) [Burkholderia rhizoxinica HKI 454] Length = 498 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 222/477 (46%), Positives = 327/477 (68%), Gaps = 9/477 (1%) Query: 2 NLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P L+ +LP G+ V+ S G + AL + I+FI +L + S FD S Sbjct: 4 HFPVLTFAIWLPIAFGIAVLAVGSDKTPGVARW--TALIGAVISFIVTLPLISGFDASTS 61 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q +E WI+ F +YHLGVDG+S+ VVLT F+T +++ W+ I + +YM AFL Sbjct: 62 ALQFVEVAPWIERFNITYHLGVDGLSMWFVVLTAFITVIVVIAGWEVITDRVAQYMAAFL 121 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L +++G F + D +LFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ ML Sbjct: 122 ILSGLMVGVFSAADGMLFYVFFEATLIPMYLIIGVWGGPNRVYAAFKFFLYTLAGSLLML 181 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A++ + + ++ +L A P + Q +++AFF +FA+K+PM+P HTWLP+AHV Sbjct: 182 VALIYLYTQSQS---FELSAWHALPLGMTPQVLLFVAFFLAFAVKVPMWPVHTWLPDAHV 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APT GSV LA IMLK+G YG +RF LP+ P AS AP + LSL+A+IY V++VQ Sbjct: 239 EAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHMLAPAVITLSLVAVIYIGFVALVQA 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KKL+AYSSI HMG+VT+G F + GVEGA+ QM+SHG VS A+F C+GV+YDR+H+R Sbjct: 299 DMKKLVAYSSITHMGFVTLGFFLFSQLGVEGAIVQMISHGFVSGAMFLCIGVLYDRMHSR 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG+V+ MP++A + ++F+MAN GLPGTSGF+GEF+VI++ + + + +LA+ + Sbjct: 359 QIADYGGVVNTMPKFAALAILFSMANCGLPGTSGFVGEFMVILAAVKFNFWIGLLAAITL 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 +L A Y+LW+ ++V FG + V +L D+S RE M+ +A+L ++ GIYP P + Sbjct: 419 ILGAAYTLWMVKRVYFGAVANDHVAKLVDVSRREFWMLMVLALLVLYMGIYPKPFTN 475 >gi|114777373|ref|ZP_01452370.1| NADH dehydrogenase subunit M [Mariprofundus ferrooxydans PV-1] gi|114552155|gb|EAU54657.1| NADH dehydrogenase subunit M [Mariprofundus ferrooxydans PV-1] Length = 420 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 216/408 (52%), Positives = 290/408 (71%), Gaps = 6/408 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 + P LS+ FLP G VI LF G R+ AL +S FI +L + +FDK Sbjct: 7 LGFPILSLSIFLPMFGALVIWLFVR----GDRAVRWAALAVSVATFIVTLPLAFMFDKNT 62 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q E + WI F +Y LGVDGIS+ ++LT+ LT CI+S+W+ IQ +EYM+AF Sbjct: 63 AHMQFEELHPWISTFHVNYQLGVDGISMPFIILTSLLTIICIISAWECIQTRVKEYMLAF 122 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LVLE+ +IG F +LD +LFY F+EA LIPM++IIGVWGG R+YA KFFLYT GS+ M Sbjct: 123 LVLETTLIGVFCALDAILFYFFWEAMLIPMYLIIGVWGGKNRVYATLKFFLYTLAGSVLM 182 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A++ M ++ + + Y F F+ Q+W+WIAFF +FA+K+PM+P HTWLP+AH + Sbjct: 183 LIAVLAMYFKAGHTFSLLAYMDYPFDFTWQFWIWIAFFIAFAVKVPMWPVHTWLPDAHTE 242 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LKMG YG +RF LP+ P ASQYF P + LSL+AI+Y SLV+M+QTD Sbjct: 243 APTAGSVILAGILLKMGAYGFLRFSLPILPDASQYFVPFMVILSLVAIVYISLVAMMQTD 302 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+LIAYSSIAHMG+VT+G F + +EGA+F M+SHG V++ALF CVGV+YDRLHTR+ Sbjct: 303 MKRLIAYSSIAHMGFVTLGTFMFTQVALEGALFGMISHGFVAAALFLCVGVMYDRLHTRE 362 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 I AYGG+ + MP +A V+++F MAN+ LPG S F+ E +V++ F S Sbjct: 363 IAAYGGVANVMPIFAAVIILFAMANVALPGASSFVAEIMVLIGTFDAS 410 >gi|319789719|ref|YP_004151352.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermovibrio ammonificans HB-1] gi|317114221|gb|ADU96711.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermovibrio ammonificans HB-1] Length = 482 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 219/423 (51%), Positives = 299/423 (70%), Gaps = 11/423 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTF 94 +ALG + + + SL +W FD + FQ +E +W+ + Y +GVDG+S+++VV+TT Sbjct: 28 IALGFTAVELLISLVMWWKFDLSKPGFQFVEVANWLPNLSVKYKVGVDGLSLIMVVMTTL 87 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 LT + S+W I+ + + L+LE+ ++G F+SLD+LLFYIF+EA LIPM +IIG+ Sbjct: 88 LTFVAVASAWSYIERRRKLFYALLLMLETAMVGVFVSLDLLLFYIFWEAMLIPMALIIGI 147 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC------WEKKTSSIIDLYAMSKFPFSIQ 208 WGG RIY+A KFF+YTF GSIF+L +VV+ + T I L A+ K P +Q Sbjct: 148 WGGERRIYSALKFFIYTFAGSIFLLIGMVVLVIVYGGLTGQYTFDIQQLTAV-KLPVELQ 206 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 W++ AFF +FA+K+P+FPFHTWLP+AHV+APT GSV LAG++LKMG YG +RF LPLFP Sbjct: 207 KWLFWAFFLAFAVKVPVFPFHTWLPDAHVEAPTPGSVILAGVLLKMGTYGFLRFSLPLFP 266 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 A + FAPVIF L ++AIIY +LV++VQ D+KK++AYSS++HMG+V IG+FS G+EG Sbjct: 267 DAYREFAPVIFALGVVAIIYTALVALVQDDVKKVVAYSSVSHMGFVMIGLFSLNVQGIEG 326 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 A+FQML+HGLVS+ALFF VG IY+RLHTR I GGL P+ A + M+FTMAN+GLPG Sbjct: 327 AVFQMLNHGLVSAALFFLVGAIYERLHTRSIRKMGGLAEFAPKLATLAMLFTMANVGLPG 386 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 TS FIGEFL I+ F+ + V VL + GV+ A Y L++YR V F K+ KDL+ Sbjct: 387 TSSFIGEFLTILGGFKAATWVGVLMALGVIFGAAYMLYMYRNVFF---LEPKILSFKDLN 443 Query: 449 LRE 451 RE Sbjct: 444 RRE 446 >gi|309781864|ref|ZP_07676597.1| NADH dehydrogenase (ubiquinone), M subunit [Ralstonia sp. 5_7_47FAA] gi|308919505|gb|EFP65169.1| NADH dehydrogenase (ubiquinone), M subunit [Ralstonia sp. 5_7_47FAA] Length = 488 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 225/483 (46%), Positives = 330/483 (68%), Gaps = 5/483 (1%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS +LP F GV V+ S G + ++L S I+F+ +L + + FDK ++ Q Sbjct: 3 LSFAIWLPIFFGVLVLASGSDRNPGYVRW--MSLIGSVISFVMTLPLITRFDKTTAAMQF 60 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E WI+ F SY+LGVDGIS+ VVLT F+T ++S+W+ I +YM AFL+L Sbjct: 61 VEKSSWIERFHISYYLGVDGISMWFVVLTAFITVIVVISAWEVITVRVAQYMAAFLILSG 120 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F SLD LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ L A++ Sbjct: 121 LMIGVFASLDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLVALL 180 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + + T I+ + + K + Q +++AFF +FA+K+PM+P HTWLP+AHV+APT G Sbjct: 181 YLYFHSGTFEILQWHQV-KLSMNEQILIFLAFFMAFAVKVPMWPVHTWLPDAHVEAPTGG 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LA IMLK+G YG +RF LP+ P AS + I +SL+A+IY LV++VQ D+KKL+ Sbjct: 240 SVVLAAIMLKLGAYGFLRFSLPIAPDASHSLSAFIIAISLVAVIYIGLVALVQADMKKLV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSIAHMG+VT+G F + GVEG + QM+SHG +S A+F C+GV+YDR+H+R I YG Sbjct: 300 AYSSIAHMGFVTLGFFIFNEIGVEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIADYG 359 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+V+ MP++A + + F MAN GLP TSGF+GEF+VI+ + + + +LA+ ++ A Y Sbjct: 360 GVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVKFNFWIGLLAATALIFGAAY 419 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 SLW+ ++V+FG + V +LKDL+ RE M+ +A+ T++ G+YP P D + ++ Sbjct: 420 SLWMVKRVIFGDVTHKHVAELKDLNCREFFMLGVLAIATLYMGLYPKPFTDVMHASVVNL 479 Query: 484 IEN 486 + + Sbjct: 480 LTH 482 >gi|256821527|ref|YP_003145490.1| proton-translocating NADH-quinone oxidoreductase subunit M [Kangiella koreensis DSM 16069] gi|256795066|gb|ACV25722.1| proton-translocating NADH-quinone oxidoreductase, chain M [Kangiella koreensis DSM 16069] Length = 505 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 231/504 (45%), Positives = 329/504 (65%), Gaps = 18/504 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILF---SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 LP LS++ ++P +G VI+F L +R + + ++ W+ F Sbjct: 4 QLPILSLLIWIPIIGGLVIMFGPGDRLLAVSQRIGILLGIITLLLS---CWLTWA-FATD 59 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + Q E WI Y L +DGIS+ L+VLT+ + ++S+ SI++ +Y A Sbjct: 60 TAEMQFAETARWIPSLNIRYDLAIDGISLPLIVLTSLIGLLVLISATGSIKKRQSQYFAA 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L++ ++ G F + D +LFY+ +EA LIPMF++IGVWGG RIYA KFFL+TFFGSIF Sbjct: 120 VLMMTGLMNGVFAAQDSILFYVLWEAMLIPMFLMIGVWGGENRIYATVKFFLFTFFGSIF 179 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML A++ M E + +I L +S + Q W++ AF +FA+KIPMFP HTWLP+AHV Sbjct: 180 MLVALIYMGREADSFAISKLQQLS-LSLTEQKWIFFAFLAAFAVKIPMFPVHTWLPDAHV 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APT GSV LA IMLKMGGYG +RF LP+ P A +A + SLIAI+Y LV++ Q Sbjct: 239 EAPTGGSVILAAIMLKMGGYGFLRFSLPITPDAVAEYAYWLILFSLIAIVYIGLVALAQK 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIF--------SGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 D+KKL+AYSSIAHMG+VT+G F ++GAM QM+SHGLVS ALFF +GV Sbjct: 299 DMKKLVAYSSIAHMGFVTLGTFIIVFLTATQAQSMALQGAMIQMISHGLVSGALFFSIGV 358 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 +YDR+H+RDI YGG+V++MP +A ++M+F +AN GLPGTSGF+GEF VI++ FQ + Sbjct: 359 LYDRMHSRDIADYGGVVNSMPIFAALLMLFILANAGLPGTSGFVGEFFVIIASFQADWRI 418 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A++A ++L+A YSLW+Y++V+FG S E V +L D++ RER +++ +A+L + GIYP Sbjct: 419 ALVAGLTLILAAAYSLWVYKRVIFGKSANESVARLDDVTKRERLVLFTLAILILALGIYP 478 Query: 470 VPIRDTFSVPLSSIIENYTL-KTG 492 P+ + L IIE+ TL KTG Sbjct: 479 QPLIEIMQPSLEKIIESATLSKTG 502 >gi|189426175|ref|YP_001953352.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter lovleyi SZ] gi|189422434|gb|ACD96832.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter lovleyi SZ] Length = 535 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 221/493 (44%), Positives = 334/493 (67%), Gaps = 11/493 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++TFLP +GV ++LF G + VAL + + FI SL + + + + + +Q + Sbjct: 5 LSVMTFLPIVGVLLLLFIPKGSNG--ALRSVALVTTVVTFIASLPILTGY-QTNAEYQFV 61 Query: 66 EYYHWI---DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E WI + Y++G+DGIS+ LV+LTTF+ P +LS+W ++++ +EYMI L+LE Sbjct: 62 ENVPWIAAGPFAMRYNIGIDGISLWLVILTTFIMPIAVLSTWTAVEDKVKEYMICLLILE 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + ++GAF+SLD+ LFYIF+E LIPM+ +IG+WGG R+YA KFF+YT GS+ ML A+ Sbjct: 122 TAMLGAFISLDLFLFYIFWELMLIPMYFMIGIWGGKNRLYATVKFFIYTLVGSLLMLVAL 181 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + I D + F I Q W++ AF +FAIK+PMFP HTWLP+AH + Sbjct: 182 IYLYFLGTKTGITDFSLVHFFDLKIDPATQTWLFAAFALAFAIKVPMFPVHTWLPDAHTE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LA IMLKMG YG IRF +PLFP A+ F P+I L++I IIYA+LV+MVQ D Sbjct: 242 APTAGSVILAAIMLKMGTYGFIRFAMPLFPEATHQFTPLIATLAVIGIIYAALVAMVQED 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSS+AH+G+V +G+F+ + GV GA+ Q L+HG+ + ALF VG IY+R HTR Sbjct: 302 VKKLVAYSSVAHLGFVMLGLFALNEQGVTGALLQNLNHGISTGALFLIVGFIYERRHTRL 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-NTVAVLASFGV 417 I +GGL MP +AV+ M+ T++++ LPGT+GF+GEFL+++ F++S ++AS GV Sbjct: 362 ITDFGGLSKQMPIFAVIFMIVTLSSVALPGTNGFVGEFLILVGGFESSLRWWTIVASSGV 421 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 + +A+Y LW++++V+FG K Q L DL+ RE ++ P+ V+ G+YP P + + Sbjct: 422 IFAAVYMLWMFQRVMFGELDNPKNQALLDLNAREIAIMVPLLVMIFVLGVYPNPFIEKMT 481 Query: 478 VPLSSIIENYTLK 490 + +I + ++ Sbjct: 482 PSIKKVIAHTRIE 494 >gi|11465635|ref|NP_049306.1| NADH dehydrogenase subunit 4 [Porphyra purpurea] gi|4106942|gb|AAD03109.1| NADH dehydrogenase subunit 4 [Porphyra purpurea] Length = 488 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 213/437 (48%), Positives = 307/437 (70%), Gaps = 3/437 (0%) Query: 35 GVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTT 93 +A G + + FI S+ +W FD S FQ + +W Y Y +G+DGIS+ ++LTT Sbjct: 34 NIAFGTAQLTFISSILLWICFDPTISLFQFVCTINWFPSYNIYYTIGIDGISLFFIILTT 93 Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 +L C+L SW I +EY+I FL LE ++I F LD++ FYIFFE+ LIPMF+IIG Sbjct: 94 WLVTTCVLISWTMINTQIKEYLICFLTLEFILIQVFCVLDVIFFYIFFESVLIPMFLIIG 153 Query: 154 VWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMW 212 +WG +R I AAY+FF+YT GS+ ML AI+V+ +++ T+ I L+ +S F Q +W Sbjct: 154 IWGSRQRKIRAAYQFFIYTLAGSLLMLLAILVIYFQQGTTDIQILWNVS-FDTRTQILLW 212 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 ++FF S A+KIPM PFH WLP AH +APTAGSV LAG++LKMGGYG +RF LP+ P AS Sbjct: 213 LSFFSSLAVKIPMIPFHIWLPEAHAEAPTAGSVILAGVLLKMGGYGFLRFSLPMLPEASL 272 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 YF+P+I+ LS++A +YASL ++ Q D+KK+IAYSS++HMG+VT+G+FS G+EG++ Sbjct: 273 YFSPLIYLLSIVAAVYASLTTIRQVDLKKIIAYSSVSHMGFVTLGLFSFNLQGLEGSIIL 332 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 MLSHGLVSSALF CVG++YDR TR + YGGLV MP ++++++ FT +N+G PGTS F Sbjct: 333 MLSHGLVSSALFLCVGILYDRHKTRILKYYGGLVQVMPIFSILLLFFTFSNIGFPGTSSF 392 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 +GEFLV+ +F+ S+ L++F ++L A YS+WL+ ++ FG K + V +D+S RE Sbjct: 393 VGEFLVLTGLFKVSSISTFLSAFSMILGAGYSIWLFNRICFGSLKLQYVTNFQDISRREF 452 Query: 453 CMVYPIAVLTVFFGIYP 469 ++ P+AV + G+ P Sbjct: 453 YILLPLAVSILLMGVCP 469 >gi|91776401|ref|YP_546157.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacillus flagellatus KT] gi|91710388|gb|ABE50316.1| NADH dehydrogenase subunit M [Methylobacillus flagellatus KT] Length = 495 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 222/490 (45%), Positives = 327/490 (66%), Gaps = 3/490 (0%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 +LPFLS+ ++P L ++LF+ + + LG S F ++ ++ FD Sbjct: 3 DLPFLSLSIWVPILAGVLVLFTGGDKHASAARWLALLG-SIAGFAVTVPLYLGFDTQYGG 61 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ +E WI F YHLGVDGI++ L++LT+F T +++ W+ I++ +YM AFL+ Sbjct: 62 FQFVERLQWIPAFNIQYHLGVDGIAVPLILLTSFTTFIVVIAGWEVIEKRVAQYMAAFLI 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + ++IG F +LD +L+YIF+EA LIPMF++IG+WGG R+YA KFFLYT GS+ ML Sbjct: 122 MSGIMIGVFSALDAILYYIFWEAMLIPMFLVIGIWGGPNRVYATIKFFLYTLLGSLLMLV 181 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A + + + + I D Y M +Q W+++AFF +FA+KIPM+P HTWLP+AHV+AP Sbjct: 182 AFIYLYHQSGSFDITDYYRM-PLALDVQIWLFVAFFMAFAVKIPMWPVHTWLPDAHVEAP 240 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LA I LK+GGY +RF +P+ P AS Y A + LSLIA++Y +LV++VQ D+K Sbjct: 241 TGGSVVLAAIALKLGGYSFLRFAMPIAPDASHYLAGFMITLSLIAVVYIALVALVQKDMK 300 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSSI+HMG+VT+G F G+EGA+ QM+SHG +S+A+F CVGV+YDR+H+R I Sbjct: 301 KLIAYSSISHMGFVTLGFFLFNPLGLEGAIVQMISHGFISAAMFLCVGVLYDRMHSRQIA 360 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGG+V+ MP + ++F MAN GLPGTSGF+GEF+VI+ Q + A LA+ ++ Sbjct: 361 DYGGVVNTMPVFTAFAVLFAMANAGLPGTSGFVGEFMVILGTVQVNFWYAFLAATTLIFG 420 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LW+ ++V +G +V LKD++ RE ++ +A+L + FGIYP PI + + Sbjct: 421 AAYTLWMVKRVYYGEIANPQVAALKDINRREFFILGLLALLVLGFGIYPQPITEMTHATV 480 Query: 481 SSIIENYTLK 490 S ++E+ L Sbjct: 481 SQLLEHMALS 490 >gi|14272171|emb|CAC39485.1| NADH dehydrogenase subunit 4 [Corsinia coriandra] Length = 418 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/395 (53%), Positives = 288/395 (72%), Gaps = 2/395 (0%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++++G+DGIS+ V+LTTFLTP CIL + S++ +EYMIAF + ES ++ F SLD+L Sbjct: 11 NFYIGIDGISLFFVILTTFLTPICILVGFYSVKSYKKEYMIAFFICESFLVAVFCSLDLL 70 Query: 136 LFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FY+FFE+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+ + ++ T+ Sbjct: 71 IFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIFFQTGTTD- 129 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + + ++F Q +WIAFF SF++K+PM P H WLP AHV+APTAGSV LAGI+L++ Sbjct: 130 LQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLRL 189 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG +RF +P+FP A+ YF P I+ LS+IAIIY SL ++ Q D+KK+IAYSS+AHM +V Sbjct: 190 GTYGFLRFSIPMFPEATLYFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFV 249 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 TIG+FS G+EG++ MLSHGLVSSALF CVG +YDR TR + YGGLV MP ++ Sbjct: 250 TIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGALYDRHKTRIVKYYGGLVSTMPIFST 309 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + + FT+ANM LPGTS IGEFL+++ FQ ++ VA LA+ G++L A YSLWLY +VVFG Sbjct: 310 IFLFFTLANMSLPGTSSLIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFG 369 Query: 435 VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K + + DL+ RE + P V ++ G+YP Sbjct: 370 NFKPNFILKFSDLNRREVLIFLPFIVGVIWMGVYP 404 >gi|34496408|ref|NP_900623.1| NADH dehydrogenase subunit M [Chromobacterium violaceum ATCC 12472] gi|34102261|gb|AAQ58627.1| NADH-ubiquinone oxidoreductase, chain M [Chromobacterium violaceum ATCC 12472] Length = 499 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 216/478 (45%), Positives = 325/478 (67%), Gaps = 12/478 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKG 58 M+ LS+V + P L +L + G +R+ +A+ + F+ S+ +++ F+ Sbjct: 1 MSTNLLSLVIWTPILAGLAVLAT---GGDQRAPLARWLAVAGALAGFLLSIPLFTEFNNL 57 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 Q E WI +YHLGVDGIS+L VVL +F T +++ W+ IQ+ +YM A Sbjct: 58 SGGMQFEEMKPWIASLNINYHLGVDGISMLFVVLNSFTTLLVVIAGWEVIQKRVSQYMAA 117 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL++ ++ GAF +LD +LFY+FFE LIPM++IIGVWGG R+YA+ KFFLYT GS+ Sbjct: 118 FLIMSGLINGAFAALDAILFYVFFEGMLIPMYLIIGVWGGPRRVYASIKFFLYTLLGSLL 177 Query: 178 MLFAIVVMCWEK-KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML A++ + ++ K+ I+ + ++K + Q +++AFF SFA+K+PM+P HTWLP+AH Sbjct: 178 MLVALIYLYFQAGKSFEILAFHDIAKITLTAQILLFVAFFLSFAVKVPMWPVHTWLPDAH 237 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT GS+ LA I LK+G YG +RF LP+ P AS+ +P+I LSL+A++Y LV++VQ Sbjct: 238 VEAPTGGSMVLAAITLKIGAYGFLRFALPILPDASRELSPIIIGLSLVAVVYIGLVALVQ 297 Query: 297 TDIKKLIAYSSIAHMGYVTIGIF----SGMKS-GVEGAMFQMLSHGLVSSALFFCVGVIY 351 +D+KKL+AYSSI+HMG+VT+G+F S M VEGA+ QM+SHG VS+A+FFC+GV+Y Sbjct: 298 SDMKKLVAYSSISHMGFVTLGLFLFAGSEMNQWAVEGALVQMVSHGFVSAAMFFCIGVMY 357 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+H+R+I YGG+ + MP +A MM+F MAN GLP TSGF+GEF+VIM Q + A Sbjct: 358 DRVHSRNIADYGGVANKMPIFAAFMMLFAMANSGLPATSGFVGEFMVIMGSVQVNFWYAA 417 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 LA+ ++ A Y+LW+Y++V+FG V +L D++ RE ++ +A++ + G+YP Sbjct: 418 LAATTLIFGAAYTLWMYKRVIFGDVANPHVAELSDVNKREFLVLAILALMVLGMGLYP 475 >gi|221633761|ref|YP_002522987.1| NADH-quinone oxidoreductase subunit m [Thermomicrobium roseum DSM 5159] gi|221157040|gb|ACM06167.1| nadh-quinone oxidoreductase chain m [Thermomicrobium roseum DSM 5159] Length = 524 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 229/521 (43%), Positives = 335/521 (64%), Gaps = 41/521 (7%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 NLP LS++T+ P +G ++ + G R+ +AL S+++F+ S+ + FD+ +S+ Sbjct: 3 NLPILSLITYSPLVGAAILFL--WGGASPRAARWIALLASSVSFLLSVVMLVAFDRDQST 60 Query: 62 FQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q E + W+ + +Y LGVDGIS LV LTT LT +L+SW I+ REY I L+ Sbjct: 61 LQFTETFDWLPELGIAYRLGVDGISAPLVGLTTLLTLIAVLASWDPIRHRVREYYITLLL 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L + ++G F+SLD+ LFY+F+E LIPM +IIGVWG + R+YAA KFFLYT GS+ ML Sbjct: 121 LATGMLGVFVSLDLFLFYVFWEIVLIPMALIIGVWGSANRVYAAVKFFLYTLAGSLLMLV 180 Query: 181 AIVVMCWEK------KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 IV + E +T ++ L A ++ + Q+W ++AFF +FAIK+PM+PFHTWLP+ Sbjct: 181 GIVAIYQEYFRQTGIRTLDVLQL-AQGQYSEAFQFWTFLAFFLAFAIKVPMWPFHTWLPD 239 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+APTAGSV LAG++LKMGGYG +RF LPLFP A++ +AP I LS+IAI+Y +L+++ Sbjct: 240 AHVEAPTAGSVILAGVLLKMGGYGFLRFNLPLFPDATRMWAPAIVVLSVIAILYGALMAL 299 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 VQ D KKL+AYSS++HMG+VT+GIF + G+ GAM MLSHG V+SALF VGV+Y+R Sbjct: 300 VQQDFKKLVAYSSVSHMGFVTLGIFVLNQPGLSGAMVVMLSHGFVTSALFLIVGVLYERA 359 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 HTRD+ A+GGL NMP +A +FT+A++GLPG SGF+GEFL ++ F+ VL + Sbjct: 360 HTRDLAAFGGLARNMPVFAAFFGLFTLASLGLPGLSGFVGEFLALLGGFRAYRWAGVLGT 419 Query: 415 FGVVLSALYSLWLYRKVVF-------------------------------GVSKCEKVQQ 443 V+L+A Y L +Y++V G + Sbjct: 420 IVVILAAWYMLRVYQRVALVRAPGEPPDPDDPERRLALAHGLPPIAGGSDGPHAYPDPRT 479 Query: 444 LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 DL+ RE + P+A+LT++ G+YP+P+ + L++++ Sbjct: 480 FPDLTWREAVSLLPLALLTIWIGVYPLPLLEMLEPALAALL 520 >gi|254469064|ref|ZP_05082470.1| NADH dehydrogenase i, chain m [beta proteobacterium KB13] gi|207087874|gb|EDZ65157.1| NADH dehydrogenase i, chain m [beta proteobacterium KB13] Length = 491 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 224/471 (47%), Positives = 322/471 (68%), Gaps = 5/471 (1%) Query: 6 LSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LSI + P + G+ ++L L G G I+F+ +L ++ FDKG S FQ Sbjct: 5 LSIAIWTPIIFGIILLLVQDKLSTTLTYRLGNLFGF--ISFLVTLPLYIYFDKGFSGFQF 62 Query: 65 IEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 E Y WI++F +YHLG+DGIS+ LV+LT+F++ I S SIQ Y+ AFL+L Sbjct: 63 QEIYPWINHFSINYHLGLDGISLPLVLLTSFISWLVIFISSNSIQRAIGFYISAFLILSG 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG FL+LD +L+Y+F+EA LIPMF++IG+WGG R+YA KFFLYT GS+ ML A + Sbjct: 123 LMIGVFLALDAILYYVFWEAMLIPMFLLIGIWGGPNRVYATIKFFLYTVLGSLLMLVAFL 182 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + + + +I+D Y +IQ +++AFF +FA+KIPM+P HTWLP+AHV+APT G Sbjct: 183 YLYNQTASFAILDFYT-KPLSLNIQVLIFLAFFMAFAVKIPMWPVHTWLPDAHVEAPTGG 241 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LA IMLK+GGY IRF +P+ P A + P + LSLIAI+Y + V++VQTD+KKLI Sbjct: 242 SVILAAIMLKLGGYSFIRFAMPISPDALIFLKPFLIGLSLIAIVYIAFVAIVQTDMKKLI 301 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI+HMG+VT+G+F G EG QM+SHG +S+ALFF +GV+Y+R+H+R+I Y Sbjct: 302 AYSSISHMGFVTLGLFILNPLGFEGGYVQMISHGFISAALFFAIGVLYERMHSRNISDYK 361 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G++++MP + ++F MAN GLPGTSGF+GEFLVI+ Q+ +A AS ++ A Y Sbjct: 362 GVINSMPIFGSFFVLFAMANSGLPGTSGFVGEFLVILGAMQDHFWIAFFASLTLIFGATY 421 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 SLWL ++++FG K +K+ LKDL+ +E ++ +A++T+ GIYP I D Sbjct: 422 SLWLVKRIIFGEVKNKKIAALKDLNGKEFFVMSVLALMTLAIGIYPALITD 472 >gi|73540676|ref|YP_295196.1| NADH dehydrogenase subunit M [Ralstonia eutropha JMP134] gi|72118089|gb|AAZ60352.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Ralstonia eutropha JMP134] Length = 488 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 223/486 (45%), Positives = 328/486 (67%), Gaps = 11/486 (2%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCGR---RSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 LS +LP F G+ V+ S G S FG S +FI +L + FDK ++ Sbjct: 3 LSFAIWLPIFFGLLVLASGSDRSAGYVRWMSLFG-----SIASFIVTLPLVFHFDKSTAA 57 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E WI+ F Y+LGVDGIS+ VVLT F+T ++S+W+ I E EYM +FL+ Sbjct: 58 MQFVEKSSWIERFNIQYYLGVDGISMWFVVLTAFITVIVVISAWEVITERVAEYMASFLI 117 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L +++G F +LD +LFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ L Sbjct: 118 LSGVMVGVFCALDGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLLTLV 177 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ + + T I+ + +K + Q ++IAFF +FA+K+PM+P HTWLP+AHV+AP Sbjct: 178 ALLYLYSKTGTFEILQ-WHQAKLSLNEQIALFIAFFMAFAVKVPMWPVHTWLPDAHVEAP 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LA IMLK+G YG +RF LP+ P AS A I +SLIA+IY LV++VQ D+K Sbjct: 237 TGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHSLAAFIITISLIAVIYIGLVALVQADMK 296 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KL+AYSSIAHMG+VT+G F + G+EG + QM+SHG +S A+F C+GV+YDR+H+R I Sbjct: 297 KLVAYSSIAHMGFVTLGFFIFNEIGIEGGIVQMISHGFISGAMFLCIGVLYDRVHSRQIA 356 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGG+V+ MP++A + + F MAN GLP TSGF+GEF+VI+ + + + +LA+ ++ Sbjct: 357 DYGGVVNTMPKFAALSVFFAMANCGLPATSGFVGEFMVILGSVEFNFWIGLLAATALIFG 416 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A YSLW+ ++V+FG + V++L DL+ RE M+ +A++T++ G++P P D + Sbjct: 417 AAYSLWMVKRVIFGDIVHQHVRELVDLNKREFLMLGLLAIMTLYMGLHPKPFTDVMHASV 476 Query: 481 SSIIEN 486 +++ + Sbjct: 477 VNLLSH 482 >gi|84508542|ref|YP_448706.1| NADH dehydrogenase subunit 4 [Dictyota dichotoma] gi|45925710|gb|AAS79091.1| NADH dehydrogenase subunit 4 [Dictyota dichotoma] Length = 480 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 221/453 (48%), Positives = 310/453 (68%), Gaps = 11/453 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 V+LG +++ F+ SL +W FD+ S FQ + W+ + LGVDGIS+ V+LTT Sbjct: 31 VSLGCTSVVFVISLLLWVGFDQSTSKFQFVVDGLWLPVANINVILGVDGISLFFVILTTL 90 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 + P CILSSW SI + ++I+F+++E ++I F SLD++LFYIFFE LIPMF++IGV Sbjct: 91 IFPLCILSSWFSINVGVKSFLISFMLMEFVLILVFTSLDLVLFYIFFETVLIPMFLVIGV 150 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R + AAY FFLYT FGS+ ML A++ + TS+ ++ + +F Q W+W+ Sbjct: 151 WGSRQRKVRAAYLFFLYTLFGSLLMLIAVIYIYHFSGTSNY-EILSTIEFSEYSQRWLWL 209 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF SFA K+PM PFH WLP AHV+APTAGSV LAGI+LK+G YG +RF LFP AS Y Sbjct: 210 AFFASFAAKVPMLPFHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSWGLFPEASVY 269 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P IF LSL+ ++Y SL ++ QTD+K+L+AY+S+AHM V IG+F+G GVE A+ Q Sbjct: 270 FTPFIFSLSLLGVVYTSLTAIRQTDLKRLVAYTSVAHMNLVVIGLFTGSILGVEAALLQS 329 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHG VSSALF +GV+YDR H+R + Y GLVH+MP + +V + FTMAN+GLPGTS F+ Sbjct: 330 LSHGFVSSALFLIIGVLYDRWHSRVVKYYSGLVHSMPVFIIVFLFFTMANLGLPGTSSFV 389 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+++S F+ ++T A+ +VL YSLWL+ +V +G +K + D+SLRE Sbjct: 390 GEFLLLLSAFEANSTACFFAATSMVLGGAYSLWLFNRVAYGNAKLIGL----DISLREFV 445 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P+ + T+ GIYP + F P+ + + N Sbjct: 446 LFLPLILGTLIMGIYP----NVFLQPMHAAVSN 474 >gi|332526759|ref|ZP_08402861.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2] gi|332111162|gb|EGJ11194.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2] Length = 491 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 214/466 (45%), Positives = 320/466 (68%), Gaps = 5/466 (1%) Query: 26 LGCGRRSFFGVALGISTINFIFSLFVW----SVFDKGRSSFQMIEYYHWIDYF-CSYHLG 80 L GR S +A I+ + + S V + FD G ++ Q E WI+ F +YHLG Sbjct: 19 LAVGRDSNPHLARWIALVGAVASFLVTIPLITGFDAGTAALQYQELVPWIERFNVNYHLG 78 Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIF 140 VDG+S+ V LT F+T +++ W+ I + Y+ AFLVL +++G F + D LLFY+F Sbjct: 79 VDGLSVWFVPLTAFITVIVVIAGWQVITDRVPLYLGAFLVLSGLMVGVFSAADGLLFYVF 138 Query: 141 FEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM 200 FEA+LIPM++IIGVWGG+ R+YAA+KFFLYT GS+ ML A+V + ++ S I + Sbjct: 139 FEATLIPMYIIIGVWGGARRVYAAFKFFLYTLLGSLLMLVAVVYLYYQSGGSFEIQDWHK 198 Query: 201 SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCI 260 + Q +++AFF +F++K+PM+P HTWLP+AHV+APT GSV LA IMLK+G YG + Sbjct: 199 LPLTLTAQTLLFVAFFAAFSVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 258 Query: 261 RFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS 320 RF LP+ P A++ +A VI LSLIA++Y LV++VQ D+KKL+AYSSIAHMG+VT+G F Sbjct: 259 RFSLPIAPDAAREYAWVIITLSLIAVVYIGLVALVQRDMKKLVAYSSIAHMGFVTLGFFI 318 Query: 321 GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFT 380 + GV GA+ QM+SHG VS A+F C+GV+YDR+H+R+I AYGG+V+ MP++A ++F Sbjct: 319 FNELGVTGAIVQMISHGFVSGAMFLCIGVLYDRVHSREISAYGGVVNTMPKFAAFAVLFA 378 Query: 381 MANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK 440 MAN GLPGT+GF+GE++VI+ +++ VA LA+ ++ A Y+LW+ ++V FG + Sbjct: 379 MANCGLPGTAGFVGEWMVILGAVKHNFWVAGLAATTLIFGAAYTLWMVKRVYFGPVANDH 438 Query: 441 VQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 V++L+D+ RE M+ +A ++ G+YP P + V +S ++++ Sbjct: 439 VKELQDIDAREFLMLALLAAAVLWMGLYPKPFTEVMDVSVSELLKH 484 >gi|291280345|ref|YP_003497180.1| NADH-quinone oxidoreductase subunit M [Deferribacter desulfuricans SSM1] gi|290755047|dbj|BAI81424.1| NADH-quinone oxidoreductase, M subunit [Deferribacter desulfuricans SSM1] Length = 499 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 222/489 (45%), Positives = 336/489 (68%), Gaps = 11/489 (2%) Query: 7 SIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSL-FVWSVFDKGRSSFQMI 65 +I+T L F VF L L ++ A S I FI ++ +W+ FDK ++ Q + Sbjct: 4 NILTILIFFPVFAALVIFALWRSGKATMWAAFVASVIEFILTMPLMWN-FDKSTAAMQFV 62 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E Y W+ + SY++GVDGISIL+V LTT LT IL+S+K I + RE+ +A L+LE+ Sbjct: 63 EKYSWVKAWGISYYVGVDGISILMVFLTTLLTMISILASFKYIGKRQREFYLAMLILEAA 122 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F++LD LFYIF+EA LIPM++IIGVWGG RIYAA KFFLYT GS+ M+ AI+ Sbjct: 123 IVGVFVALDFFLFYIFWEAMLIPMYLIIGVWGGQRRIYAAIKFFLYTLAGSVLMMLAIIA 182 Query: 185 MCWE------KKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + ++ + T I+ + A S ++ Q +++AFF FAIK+PMFPFHTWLP+AHV Sbjct: 183 LYFKHGQLTGEYTFDILKITAASAQYSVGFQTIVFLAFFLGFAIKVPMFPFHTWLPDAHV 242 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAG++LKMG YG +RF LP+ P+AS F P+I LS+IAIIY +LV+MVQ Sbjct: 243 EAPTAGSVILAGVLLKMGTYGFLRFCLPITPVASVKFVPLIAALSVIAIIYGALVAMVQE 302 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KKL+AYSS++HMG+VT+GI++ ++G+EG + QM +HG+++ ALF +G+IY+R HTR Sbjct: 303 DVKKLVAYSSVSHMGFVTLGIYALNQAGIEGGILQMFNHGIITGALFLLIGLIYERTHTR 362 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG+ +P YA + +F+ ++GLP GFIGEFLV++ F++ + A++A+ GV Sbjct: 363 LIADYGGIAKYVPVYATIFAIFSFGSIGLPSMGGFIGEFLVLVGSFKSLSNYAIVAASGV 422 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 + +A+Y LW+Y++V F + + + ++D+++RE ++P+ +L + G+YP Sbjct: 423 IFAAVYMLWMYQRVFFQ-TPNSRWEGIEDVNVREFIYLFPLIILVFWTGLYPETFTSYMH 481 Query: 478 VPLSSIIEN 486 + S++E+ Sbjct: 482 ESVRSLLEH 490 >gi|253998395|ref|YP_003050458.1| proton-translocating NADH-quinone oxidoreductase subunit M [Methylovorus sp. SIP3-4] gi|253985074|gb|ACT49931.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylovorus sp. SIP3-4] Length = 492 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 216/487 (44%), Positives = 329/487 (67%), Gaps = 3/487 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P LS+ ++P ++L + R + + +AL S F+ +L +++ F+ Sbjct: 1 MDWPILSLSIWVPIFAGVLVLCTGGDQNARLARW-LALFGSIAAFLVTLPLYTHFNMMDG 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ E + WI F +YHLGVDG+++ L++LT+F T +++ W+ I++ +YM AFL Sbjct: 60 GFQFQEGHRWITSFNINYHLGVDGLAVPLIILTSFTTVIVVIAGWEVIEKRVAQYMAAFL 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++ ++IG F +LD +L+Y+F+EA LIPMF++IG+WGG R+YA KFFLYTF GS+ ML Sbjct: 120 IMSGLMIGVFAALDAILYYMFWEAMLIPMFLVIGIWGGPNRVYATIKFFLYTFIGSLLML 179 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A + + + + ++D Y + F Q +++AFF +FA+K+PM+P HTWLP+AHV+A Sbjct: 180 VAFIYLYHQSNSFELVDYYQL-PLSFKAQILIFLAFFMAFAVKVPMWPVHTWLPDAHVEA 238 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT GSV LA I LK+GGY +RF +P+ P A+ Y + + LSLIA++Y +LV++VQ D+ Sbjct: 239 PTGGSVVLAAIALKLGGYSFLRFAMPIAPDAAHYLSGFMITLSLIAVVYIALVALVQKDM 298 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSSI+HMG+VT+G F G+EGA+ QM+SHG VSSA+F VGV+YDR+H+R I Sbjct: 299 KKLIAYSSISHMGFVTLGFFIFNPLGMEGAIVQMISHGFVSSAMFLSVGVLYDRMHSRQI 358 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGG+V+ MP +A ++F MAN GLPGTSGF+GEF+VI+ Q + A LAS ++L Sbjct: 359 ADYGGVVNTMPTFAAFAVLFGMANAGLPGTSGFVGEFMVILGALQANFWFAFLASTTLIL 418 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 A Y+LW+ ++V +G V LKDL+ RE ++ +AVL + FG+YP PI + Sbjct: 419 GAAYTLWMVKRVFYGEIGNAHVAALKDLNRREFFILSVLAVLVIGFGVYPHPITEMTHAT 478 Query: 480 LSSIIEN 486 +++++ + Sbjct: 479 VNNLLAH 485 >gi|224824811|ref|ZP_03697918.1| proton-translocating NADH-quinone oxidoreductase, chain M [Lutiella nitroferrum 2002] gi|224603304|gb|EEG09480.1| proton-translocating NADH-quinone oxidoreductase, chain M [Lutiella nitroferrum 2002] Length = 497 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 221/490 (45%), Positives = 328/490 (66%), Gaps = 13/490 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS+V + P + ++L + G +R+ +AL S F+ SL +++ F+ Q Sbjct: 6 LSLVIWTPIVAGLLVLTT---GGDQRAPLARWLALAGSLAGFLVSLPLYTGFNDLNGGMQ 62 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E WI +YHLGVDGIS+L +VL +F T +L+ W+ I++ +YM AFL++ Sbjct: 63 FEEMRPWIQALNINYHLGVDGISMLFIVLNSFTTLMVVLAGWEVIEKRVAQYMAAFLIMS 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++ G+F SLD +LFY+FFEA LIPM++IIGVWGG R+YA+ KFFLYT GS+ ML A Sbjct: 123 GLINGSFASLDAMLFYVFFEAMLIPMYLIIGVWGGPRRVYASVKFFLYTLLGSLLMLVAF 182 Query: 183 VVMCWEK-KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + M + KT I+ + M K S+Q +++AFF SFA+K+PM+P HTWLP+AHV+APT Sbjct: 183 IYMYFHAGKTFEILAFHDM-KIALSVQMLLFVAFFLSFAVKVPMWPVHTWLPDAHVEAPT 241 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GS+ LA I LK+G YG +RF LP+ P AS+ A V+ LSL+A++Y LV++VQ+D+KK Sbjct: 242 GGSMVLAAITLKLGAYGFLRFALPILPDASRELAWVMVALSLVAVVYIGLVALVQSDMKK 301 Query: 302 LIAYSSIAHMGYVTIGIF----SGMKS-GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 L+AYSSI+HMG+VT+G+F + M VEGA+ QM+SHG VS+A+FFC+GV+YDRLH+ Sbjct: 302 LVAYSSISHMGFVTLGMFMFLGTNMNQWAVEGALVQMVSHGFVSAAMFFCIGVMYDRLHS 361 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R+I YGG+ + MP +A MM+F MAN GLP TSGF+GEF+VI+ Q + A LA+ Sbjct: 362 RNIADYGGVANKMPIFAAFMMLFGMANSGLPATSGFVGEFMVILGAVQVNFWYAALAATT 421 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++ A Y+LW+Y++V+FG V ++KD++ RE ++ +A+ + G+YP Sbjct: 422 LIFGAAYTLWMYKRVIFGDIGNSHVAEMKDVNKREFLVLAILAITVLGMGLYPQAFVSKM 481 Query: 477 SVPLSSIIEN 486 + ++ +I + Sbjct: 482 HLSVNDLIAH 491 >gi|313200472|ref|YP_004039130.1| proton-translocating NADH-quinone oxidoreductase subunit m [Methylovorus sp. MP688] gi|312439788|gb|ADQ83894.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylovorus sp. MP688] Length = 492 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 215/487 (44%), Positives = 329/487 (67%), Gaps = 3/487 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P LS+ ++P ++L + R + + +AL S F+ +L +++ F+ Sbjct: 1 MDWPILSLSIWVPIFAGVLVLCTGGDQNARLARW-LALFGSIAAFLVTLPLYTHFNMMDG 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ E + WI F +YHLGVDG+++ L++LT+F T +++ W+ I++ +YM AFL Sbjct: 60 GFQFQEGHRWITSFNINYHLGVDGLAVPLIILTSFTTVIVVIAGWEVIEKRVAQYMAAFL 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++ ++IG F +LD +L+Y+F+EA LIPMF++IG+WGG R+YA KFFLYTF GS+ ML Sbjct: 120 IMSGLMIGVFAALDAILYYMFWEAMLIPMFLVIGIWGGPNRVYATIKFFLYTFIGSLLML 179 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A + + + + ++D Y + F Q +++AFF +FA+K+PM+P HTWLP+AHV+A Sbjct: 180 VAFIYLYHQSNSFELVDYYQL-PLSFKAQILIFLAFFMAFAVKVPMWPVHTWLPDAHVEA 238 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT GSV LA I LK+GGY +RF +P+ P A+ Y + + LSLIA++Y +LV++VQ D+ Sbjct: 239 PTGGSVVLAAIALKLGGYSFLRFAMPIAPDAAHYLSGFMITLSLIAVVYIALVALVQKDM 298 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSSI+HMG+VT+G F G+EGA+ QM+SHG VSSA+F VGV+YDR+H+R I Sbjct: 299 KKLIAYSSISHMGFVTLGFFIFNPLGMEGAIVQMISHGFVSSAMFLSVGVLYDRMHSRQI 358 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGG+V+ MP +A ++F MAN GLPGTSGF+GEF+VI+ Q + A LAS ++L Sbjct: 359 ADYGGVVNTMPTFAAFAVLFGMANAGLPGTSGFVGEFMVILGALQANFWFAFLASTTLIL 418 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 A Y+LW+ ++V +G V LKDL+ RE ++ +A+L + FG+YP PI + Sbjct: 419 GAAYTLWMVKRVFYGEIGNAHVAALKDLNRREFFILSVLALLVIGFGVYPHPITEMTHAT 478 Query: 480 LSSIIEN 486 +++++ + Sbjct: 479 VNNLLAH 485 >gi|292493656|ref|YP_003529095.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus halophilus Nc4] gi|291582251|gb|ADE16708.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus halophilus Nc4] Length = 504 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 231/498 (46%), Positives = 328/498 (65%), Gaps = 17/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 LP LS+V ++P LG ++L +G +AL +S ++F+ S +++ FD ++ Sbjct: 4 GLPLLSLVIWMPILGGLLVL---AMGNRVDRVRWLALLVSGLSFVVSWSLYTGFDTTTAA 60 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q E WI+ F YHLGVDGIS+ L++LTTF T +++ W+ IQ +YM AFL+ Sbjct: 61 MQFQEKAAWIEIFKVYYHLGVDGISMPLIILTTFSTVLVVIAGWQVIQHKLGQYMAAFLI 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +E ++ G F +LD +LFY+FFE LIP+F+IIG+WGG RIYA KFFLYTF GS+F+L Sbjct: 121 MEGLMNGVFAALDAVLFYVFFEGMLIPLFLIIGIWGGPNRIYATLKFFLYTFLGSVFLLL 180 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ + SI++ + + Q +++AF +FA+K+PM+P HTWLP+AHV+AP Sbjct: 181 ALLYLRSITDGFSILEFH-QAPLGMQAQVALFLAFLLAFAVKVPMWPVHTWLPDAHVEAP 239 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LA I LK+G YG +RF LP+ P AS +I LSLIA++Y LV+MVQ D+K Sbjct: 240 TGGSVILAAITLKIGAYGFMRFSLPIAPDASLALNWLIITLSLIAVVYIGLVAMVQEDLK 299 Query: 301 KLIAYSSIAHMGYVTIGIF------------SGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 KLIAYSSIAHMG+VT+G+F G G+EGA+ QM+SHGLVS+A+F CVG Sbjct: 300 KLIAYSSIAHMGFVTLGLFIAFVIFARGVEGEGAVMGLEGALVQMISHGLVSAAMFLCVG 359 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+YDR+HTR I YGG+V+ MP +A M++F+MAN GLPGTSGF+GEFLVI+ FQ Sbjct: 360 VLYDRMHTRMIKDYGGVVNTMPVFASFMVLFSMANAGLPGTSGFVGEFLVILGAFQADFW 419 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 A LAS ++L A YSLW+ ++VVFG + V LKDL+ RE ++ +A + G++ Sbjct: 420 YAFLASMTLILGAAYSLWMVKRVVFGEVANDNVAALKDLNSREFLVLGSLAAAVLLLGVW 479 Query: 469 PVPIRDTFSVPLSSIIEN 486 P P+ + + ++ Sbjct: 480 PQPLLEVMHASIEHLLSQ 497 >gi|11497457|ref|NP_042247.1| NADH dehydrogenase (ubiquinone), subunit 4 [Prototheca wickerhamii] gi|3122533|sp|Q37617|NU4M_PROWI RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|467848|gb|AAD12635.1| NADH dehydrogenase (ubiquinone), subunit 4 [Prototheca wickerhamii] Length = 523 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 233/495 (47%), Positives = 321/495 (64%), Gaps = 32/495 (6%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 + ++ +V +P LG +LF ++ +AL S + F+ SL +W FD + F Sbjct: 25 MSYIEMVLAIPLLGAIALLFVP--SWKTQTIRNIALNSSLLTFLISLLLWIEFDSSSALF 82 Query: 63 QMIEYYHWIDYFCS----------------------YHLGVDGISILLVVLTTFLTPFCI 100 Q + D CS + LGVDGIS+ ++LTT L P CI Sbjct: 83 Q------FTDGVCSPNVYSDVTLAKAASSSSFSALNFALGVDGISLFFIILTTLLVPICI 136 Query: 101 LSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER 160 L SW +I+ +EY IAFLVLE++++ F LD+LLFYIFFE+ LIPMF+IIGVWG ER Sbjct: 137 LVSWNNIEVYVKEYCIAFLVLETLMLTVFSVLDLLLFYIFFESVLIPMFIIIGVWGSRER 196 Query: 161 -IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF 219 I AAY+FFLYT FGS+ ML AI+++ ++ T I LY +S F + Q +W+AFF SF Sbjct: 197 KIRAAYQFFLYTLFGSVLMLLAILLIYFQTGTLDIEMLY-LSDFSETRQCILWLAFFASF 255 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 A+K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +PLFP A YF P+I+ Sbjct: 256 AVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPLFPYACIYFTPLIY 315 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 +S+IAI+Y S ++ Q D+KK+IAYSS+AHM +VTIG+FS G+EG++ M+SHGLV Sbjct: 316 TMSVIAIVYTSCTTIRQIDLKKIIAYSSVAHMNFVTIGLFSQNTQGIEGSILLMISHGLV 375 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 S ALF CVGV+YDR TR + Y G MP +A++ + FTMAN+ LPGTS F GEFLV Sbjct: 376 SPALFLCVGVLYDRHKTRLLRYYSGCGQTMPIFALLFVFFTMANISLPGTSSFPGEFLVF 435 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIA 459 + +QN++ VA A+ G+VL A Y+LWL ++++GVSK + + D++ RE M P+ Sbjct: 436 IGSYQNNSFVAFCAATGMVLGAAYALWLCNRLIYGVSKPDFINTWSDVNRREFFMFAPLI 495 Query: 460 VLTVFFGIYPVPIRD 474 ++ G+YP P D Sbjct: 496 AGILWIGVYPEPFLD 510 >gi|227822755|ref|YP_002826727.1| NADH-ubiquinone oxidoreductase chain M3 [Sinorhizobium fredii NGR234] gi|227341756|gb|ACP25974.1| NADH-ubiquinone oxidoreductase chain M3 [Sinorhizobium fredii NGR234] Length = 491 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 213/490 (43%), Positives = 314/490 (64%), Gaps = 11/490 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRR--SFFGVALGISTINFIFSLFVWSVFDKG 58 M P LS++ FLP G V++ C R + ALG + +F F++ + + FD Sbjct: 1 MTFPLLSLIVFLPVAGAAVLM------CLRNDDAVRWTALGFTMADFAFAVAMLAGFDTT 54 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 Q E Y W+ +Y LGVDGIS L V LT L C+L+SW +I +E+M+A Sbjct: 55 THEMQFTERYPWVPAIGITYALGVDGISALFVFLTALLGWICVLASWVAIDRKVKEFMVA 114 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L ++++++G F +LD+ LFY+ +EA LIPM++IIGVWGG+ R+YAA+KFFLYT GS+ Sbjct: 115 LLSMQALMLGVFSALDLFLFYVCWEAMLIPMYLIIGVWGGAGRVYAAFKFFLYTLAGSLL 174 Query: 178 MLFAIVVMCWEK-KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L ++V+ + +T I+ L A PF +Q W++ AF +FA+K+PM P HTWLP+AH Sbjct: 175 FLIGVIVLYFHGGQTFDILALTA-QDLPFDVQSWLFFAFLIAFAVKVPMVPVHTWLPDAH 233 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 VQAPTAGS+ LAG++LKMG YG +RF LP+ P AS Y++ ++ LS +AI+Y L+++ Q Sbjct: 234 VQAPTAGSIILAGVLLKMGAYGFLRFSLPMLPEASVYYSTLMLALSALAIVYGGLLALAQ 293 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+KKL+AYSSI+HMG+VT+GIFS G+EG + QM +HG+ + ALF VGVIY+R HT Sbjct: 294 DDLKKLVAYSSISHMGFVTMGIFSLNLRGLEGGILQMFNHGVTTGALFLFVGVIYERTHT 353 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I YGGL+ P Y + +FT+++M LPGT+ F+GE LV+ F + V A G Sbjct: 354 RSIADYGGLMKVAPVYTGFLALFTLSSMALPGTNSFVGELLVLSGGFAANMAVGTAAVLG 413 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 +LSA Y L +YRKV G + +++D+++RE + P+AV ++ G YP P + Sbjct: 414 ALLSAAYLLGMYRKVALGPASVGARYEIRDVNVREMAAILPLAVFVLWVGFYPKPFLNVI 473 Query: 477 SVPLSSIIEN 486 + +++ Sbjct: 474 DASVKNLLTE 483 >gi|302035980|ref|YP_003796302.1| NADH-quinone oxidoreductase membrane subunit M [Candidatus Nitrospira defluvii] gi|300604044|emb|CBK40376.1| NADH-quinone oxidoreductase, membrane subunit M [Candidatus Nitrospira defluvii] Length = 522 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 222/491 (45%), Positives = 324/491 (65%), Gaps = 10/491 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+LS++ FLP G + L S +ALG++ +F+ SL +W +FD + Q Sbjct: 5 PWLSLIVFLPLAGALLCLL-----VKPESARWLALGVTVADFVLSLPLWWLFDSSTAGMQ 59 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E WI Y LG+DGIS LV++TTFL PFC+ SW +I + + +M LV+E Sbjct: 60 FVERASWITAPPVQYSLGLDGISFPLVLMTTFLMPFCVTVSWTAIDKRVQLFMSMLLVME 119 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + ++G F++LD +LFY+F+EA LIPM+++IGVWGG R+YAA KFFLYT GS+ +L AI Sbjct: 120 TAMLGVFVALDFVLFYVFWEAMLIPMYLLIGVWGGPNRLYAAIKFFLYTLAGSVLLLVAI 179 Query: 183 VVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ + D+ A+S+ + S+Q W+++AFF +FA+K+PMFPFHTWLP+AHV+AP Sbjct: 180 LALYFQGGHT--FDILALSRGTYSTSLQMWLFLAFFAAFAVKVPMFPFHTWLPDAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA ++LKMG YG +RF LP+ P A+ F + LS+IAIIY + +++ QTDIK Sbjct: 238 TAGSVILASVLLKMGTYGFLRFTLPMLPDATVTFTKPMIALSIIAIIYGAYMALAQTDIK 297 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS++HMG+VT+GIF G+EGA+ QM++HG+ + LF CVG+IY+R H+R I Sbjct: 298 KLIAYSSVSHMGFVTLGIFVLNIQGIEGAVMQMVNHGITTGGLFLCVGIIYERTHSRQIQ 357 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL MPRYA+ +M+F ++++GLPGT+ F+GEFLV+ F S LA+ GV+L+ Sbjct: 358 DNTGLAGPMPRYALFLMIFALSSLGLPGTNSFVGEFLVLAGTFVWSQFATALAALGVILA 417 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y LWL ++VVFG L DL+ RE + P+ VL GI+P P+ + Sbjct: 418 AAYILWLMQRVVFGTPAPAHRAHLLDLNARETATLVPLIVLVFALGIFPNPLLSRMHASV 477 Query: 481 SSIIENYTLKT 491 + ++ T Sbjct: 478 TQLLAGQKAPT 488 >gi|313768558|ref|YP_004062232.1| NADH dehydrogenase subunit 4 [Plocamiocolax pulvinata] gi|312844685|gb|ADR03248.1| NADH dehydrogenase subunit 4 [Plocamiocolax pulvinata] Length = 490 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 236/489 (48%), Positives = 336/489 (68%), Gaps = 15/489 (3%) Query: 6 LSIVTFLPFLGVFVIL---FSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 L +V+ +P +G+FV+L S+Y C + +AL S ++F+FSL +W FD+ S F Sbjct: 10 LIVVSLIPLIGIFVMLPISSSNYFLCRQ-----IALITSCLSFLFSLLIWVKFDESSSFF 64 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q ++ + YF Y +G+DGIS+ V+LTT L CIL SW SI F+EY+I+FL+L Sbjct: 65 QFVDTFILFPYFNLHYIIGIDGISLFFVILTTLLILLCILVSWGSINYFFKEYLISFLIL 124 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLF 180 E ++I F+ LD+LLFY+FFE+ LIPMF+IIGVWG +R I AAY+ FLYT GS+ ML Sbjct: 125 EFILIQVFIVLDLLLFYVFFESVLIPMFLIIGVWGSKKRKIRAAYQLFLYTLVGSLLMLL 184 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A++ + + ++ DL + ++ F+ +Q +WIAFF SFA+KIPM PFH WLP AH + Sbjct: 185 ALLYIYYLAGST---DLQILWEYNFTEKMQIVLWIAFFASFAVKIPMIPFHIWLPEAHAE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK+GGYG +RF LP+FPLA YF+P+IF LS++AIIYAS ++ Q D Sbjct: 242 APTAGSVVLAGILLKIGGYGFLRFSLPMFPLACIYFSPLIFMLSVVAIIYASFTTLRQID 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK+IAYSSI+HMG+VTIGI++ G+EG++ MLSHG +SSALFFCVGV+YDR TR Sbjct: 302 LKKIIAYSSISHMGFVTIGIYTLNIEGIEGSLLLMLSHGFISSALFFCVGVLYDRYQTRI 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + Y GL+ MP + V +FT AN+ PGTS FIGE L+++ +FQ + + + +FG+V Sbjct: 362 LKYYSGLIQVMPLFGVYFFIFTFANISFPGTSSFIGELLILIGIFQLNFLLTFIMAFGMV 421 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 LSA YS+WL+ ++ F K + +D+S RE +++P+ L + G YP P + Sbjct: 422 LSAAYSVWLFNRLHFYTLKLHYFLKFQDISRREFWIIFPLLFLLFWMGFYPNPFLNVVHF 481 Query: 479 PLSSIIENY 487 + S+IE + Sbjct: 482 SVISLIEQF 490 >gi|319779210|ref|YP_004130123.1| NADH-ubiquinone oxidoreductase chain M [Taylorella equigenitalis MCE9] gi|317109234|gb|ADU91980.1| NADH-ubiquinone oxidoreductase chain M [Taylorella equigenitalis MCE9] Length = 493 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 220/491 (44%), Positives = 331/491 (67%), Gaps = 13/491 (2%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKG 58 ++P+L++ F+P + G+FV+ F G R+ + + + + ++F+ ++ + + FD Sbjct: 4 SIPWLTLSIFVPVIAGLFVLFF----GSDERAEYTRRMALIGAIVSFVVTIPLIAGFDAS 59 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 S+FQ E WI F YHLGVDGIS+ ++LT I++ W+ I+ +YM A Sbjct: 60 TSNFQFEENIAWISAFNAHYHLGVDGISVWFILLTAITNILVIVAGWEVIKSRISQYMAA 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL+L ++IG F SLD LLFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 120 FLILSGLMIGVFASLDGLLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLL 179 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L A + + + T D+ P ++ Q +++ A F +FA+K+PM+P HTWLP+A Sbjct: 180 TLVAFIYLYSQSGT---FDIAQWQDLPLALTPQLFIFFALFAAFAVKVPMWPVHTWLPDA 236 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+APT GS+ LA IMLK+G YG +RF LP+ P ASQ A ++ LSL AIIY SLV++V Sbjct: 237 HVEAPTGGSMVLAAIMLKLGAYGFLRFSLPITPDASQEMAWLMITLSLAAIIYISLVAIV 296 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KKLIAYSS+AHMG+VT+G F G+EGA+ QM+SHG VS+A+F C+GV+YDRLH Sbjct: 297 QEDMKKLIAYSSVAHMGFVTLGTFLFTSIGLEGAIIQMISHGFVSAAMFMCIGVMYDRLH 356 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 +R I YGG+++ MP++ ++F+MAN GLPGTSGFIGEF VI++ Q++ + +LA+ Sbjct: 357 SRQIKDYGGVINVMPKFVTFFVLFSMANSGLPGTSGFIGEFYVILAAVQHNFWIGLLAAT 416 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 ++L A YSLW+ ++V +G + V+ + D+ RE ++ +A+ T+F G+YP D Sbjct: 417 SLILGAAYSLWMVKRVAYGPIRNVHVRDMFDIDSREFAILAILALFTIFMGVYPQAFTDV 476 Query: 476 FSVPLSSIIEN 486 + +++E+ Sbjct: 477 MHASVQNLLEH 487 >gi|319943360|ref|ZP_08017642.1| NADH-quinone oxidoreductase subunit M [Lautropia mirabilis ATCC 51599] gi|319743175|gb|EFV95580.1| NADH-quinone oxidoreductase subunit M [Lautropia mirabilis ATCC 51599] Length = 499 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 213/491 (43%), Positives = 333/491 (67%), Gaps = 11/491 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKG 58 +++ +LS ++P + ++L LG +R+ +AL S + F ++ +++ FD+ Sbjct: 8 LSMGWLSAAIWVPIISGIIVL---ALGNEQRATLSRWLALLGSLVGFAVTIPLYTGFDRT 64 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 ++ Q +E WI+ Y LG+DG+S+ LV+LT F+T +++ W+ I++ +Y+ A Sbjct: 65 TAALQFVERKPWIESLGIEYSLGIDGLSVWLVLLTAFITIVVVIAGWEVIKDRVHQYLGA 124 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL+L ++IG F + D +LFY+FFEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ Sbjct: 125 FLILSGLMIGVFAAADGMLFYVFFEATLIPMYIIIGVWGGPNRVYAAFKFFLYTLLGSLL 184 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 + AI+ + + + I+ A + P ++ Q +++AF +FA+KIPM+P HTWLP+A Sbjct: 185 TMVAIIYLYLQSGSFEIL---AWHRLPLTLHEQVLIFVAFLLAFAVKIPMWPVHTWLPDA 241 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+APT GSV LA IMLK+G Y +R LP+ P AS A ++ LSL+A+IY LV++V Sbjct: 242 HVEAPTGGSVVLAAIMLKLGAYAFLRLSLPIAPDASHELAWLMITLSLVAVIYIGLVALV 301 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTD+KKL+AYSSIAHMG+VT+G F ++G++GA+ QM+SHG V+ A+F C+GV+YDRLH Sbjct: 302 QTDMKKLVAYSSIAHMGFVTLGFFMFNETGMQGAVVQMVSHGFVAGAMFLCIGVLYDRLH 361 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR I YGG+++ MP++A + ++F+MAN GLP TSGF+GEFLVI+ Q + +LA+ Sbjct: 362 TRQIADYGGVINRMPKFAALFLLFSMANAGLPATSGFVGEFLVILGAVQFDFWIGLLAAT 421 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 ++ A YSLW+Y++VVFG V +++D++ RE ++ +A L +F GIYP D Sbjct: 422 ALIWGAGYSLWMYKRVVFGPVANPNVDKMEDVNRREFWLLMLMAALVLFMGIYPKFFTDL 481 Query: 476 FSVPLSSIIEN 486 V + ++ + Sbjct: 482 IQVSVEQLLTH 492 >gi|124266608|ref|YP_001020612.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] gi|124259383|gb|ABM94377.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] Length = 491 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 212/466 (45%), Positives = 318/466 (68%), Gaps = 5/466 (1%) Query: 26 LGCGRRSFFGV----ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLG 80 L GR GV AL + ++F +L + + FD +S Q E WID F YHLG Sbjct: 19 LAAGRDEHAGVVRWIALVAAVLSFAVTLPLVTGFDTATASMQFSENLAWIDRFNVRYHLG 78 Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIF 140 VDGIS+ V+LT F+T ++++W+ + E +YM AFL+L +++G F +LD LLFY+F Sbjct: 79 VDGISVWFVLLTAFITVIVVIAAWEVVTERVNQYMGAFLILSGLMVGVFSALDGLLFYVF 138 Query: 141 FEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM 200 FEA+LIPM++IIGVWGG R+YAA+KFFLYT GS+ ML A++ + ++ S I + Sbjct: 139 FEATLIPMYIIIGVWGGPRRVYAAFKFFLYTLLGSLLMLIALIYLYYKSGGSFEILEWHT 198 Query: 201 SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCI 260 P + Q ++ AFF +FA+K+PM+P HTWLP+AHV+APT GSV LA IMLK+G YG + Sbjct: 199 LPLPMTAQTLLFFAFFAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFL 258 Query: 261 RFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS 320 RF +P+ P AS +A + LSLIA++Y LV++VQ D+KKL+AYSSIAHMG+VT+G F Sbjct: 259 RFSMPIAPDASHEWAFFVIALSLIAVLYIGLVALVQQDMKKLVAYSSIAHMGFVTLGFFI 318 Query: 321 GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFT 380 + GV G + QM+SHG VS A+F C+GV+YDR+H+R+I +YGG+V+ MP++ + + F Sbjct: 319 FNELGVSGGIVQMISHGFVSGAMFLCIGVLYDRVHSREIASYGGVVNTMPKFTALAVFFA 378 Query: 381 MANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK 440 MAN GLPGT+GF+GE++VI+ + + + +LA+ ++ A Y+LW+ ++V FG + Sbjct: 379 MANCGLPGTAGFVGEWMVILGAVKFNFWIGLLAATTLIFGAAYTLWMVKRVYFGAVANDH 438 Query: 441 VQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 V++L D++ RE M+ +A ++ G+YP P D V ++ ++++ Sbjct: 439 VRELTDINGREFFMLSLLAAAVLWMGVYPKPFTDVMQVSVTELLKH 484 >gi|186920129|ref|YP_001874783.1| NADH dehydrogenase subunit 4 [Hemiselmis andersenii] gi|186461075|gb|ACC78237.1| NADH dehydrogenase subunit 4 [Hemiselmis andersenii] Length = 486 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 232/486 (47%), Positives = 333/486 (68%), Gaps = 9/486 (1%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 F+S++ +P G+F++ F + AL S I F +SLF+W +FD + FQ Sbjct: 5 FISVLIIIPLCGIFLLFFIH--ETNAVAIKMTALVFSLITFFYSLFLWILFDHSTARFQF 62 Query: 65 IEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 EY W+ Y + +GVDGIS+L ++LTT L P CILSSW S++++ +EY FL++ES Sbjct: 63 TEYVEWLWSYNLYFFIGVDGISLLFILLTTLLIPLCILSSWSSVKKSIKEYYSYFLLMES 122 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAI 182 ++I F SLD+++F+IFFE+ LIPM++IIG WG R I A ++FFLYT GS+ ML AI Sbjct: 123 LLICVFSSLDLIIFFIFFESILIPMYLIIGFWGSRTRKIKAGFQFFLYTLIGSVLMLLAI 182 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V+ +E T+ D +S F FS Q +W+AFF SFAIK+PM PFH WLP AHV+AP Sbjct: 183 FVIYFETGTT---DYQLVSNFTFSDRRQILLWLAFFMSFAIKVPMMPFHIWLPEAHVEAP 239 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T+GSV LAG++LKMG YG +RF + LFP S YF P+++ +S+IA+IY SL ++ Q D+K Sbjct: 240 TSGSVILAGVLLKMGTYGLLRFSIALFPQGSFYFTPLVYTMSVIAVIYTSLTTLRQIDLK 299 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K+IAYSS+AHMG+VTIG+FS G+EG++ MLSHG VSSALF C+GV+Y+R HTR I Sbjct: 300 KIIAYSSVAHMGFVTIGLFSLNVQGLEGSIVIMLSHGFVSSALFLCIGVLYERHHTRLIK 359 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 Y G+ +P +++ F+MAN+G PGTS F+GEFL ++ VF+++ V LA+ G+VL Sbjct: 360 YYTGVAQIIPLFSIFFFFFSMANLGFPGTSSFVGEFLTLVGVFESNTCVTFLAATGMVLG 419 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A YSLWL +++FG E + Q +++ RE M+ P+A T+FFG+YP I D+ + + Sbjct: 420 AAYSLWLCNRILFGKLNTEYISQYTEINRREFAMLIPLAFCTLFFGVYPELILDSLHMSV 479 Query: 481 SSIIEN 486 ++I+ Sbjct: 480 TNILTK 485 >gi|297538944|ref|YP_003674713.1| proton-translocating NADH-quinone oxidoreductase subunit M [Methylotenera sp. 301] gi|297258291|gb|ADI30136.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylotenera sp. 301] Length = 508 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 218/482 (45%), Positives = 327/482 (67%), Gaps = 3/482 (0%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS ++P L +LF+S + + VAL F+ ++ +++ F+ FQ Sbjct: 15 LSFSIWVPVLAGIAVLFTSNDNKPDTTRW-VALIGGLAAFLVTIPLYTHFNFADGGFQFQ 73 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E ++WI F +YHLG DGI+I L++LT+F T I+S+W+ I++ +YM +FL++ + Sbjct: 74 EGFNWIPAFHINYHLGADGIAIPLILLTSFTTVIVIISAWEVIEKRVAQYMASFLIMSGL 133 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 +IG F +LD +L+Y+F+EA LIPMF++IG+WGG R+YA KFFLYT GS+ ML A + Sbjct: 134 MIGVFSALDAILYYVFWEAMLIPMFLVIGIWGGPNRVYATVKFFLYTLLGSLLMLVAFIY 193 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + + I+D Y + P ++Q +++AFF +FA+KIPM+P HTWLP+AHV+APT GS Sbjct: 194 LYMNTNSFEIVDFYNY-QMPLNVQVLIFLAFFAAFAVKIPMWPVHTWLPDAHVEAPTGGS 252 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 V LA I LK+GGY +RF +P+ P A+ Y + + LSLIAI+Y +LV++VQ D+KKLIA Sbjct: 253 VVLAAIALKLGGYSFLRFAMPIAPDAAHYLSGFMITLSLIAIVYIALVALVQKDMKKLIA 312 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSSI+HMG+VT+G F G+EGA+ QM+SHG +S+A+F CVGV+YDR+H+R+I +YGG Sbjct: 313 YSSISHMGFVTLGFFIFNNLGLEGAIVQMVSHGFISAAMFLCVGVLYDRVHSREIKSYGG 372 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + + MP +A ++F MAN GLPGTSGF+GEF+VI+ Q + A LASF ++ A Y+ Sbjct: 373 VANTMPTFAAFAVLFAMANSGLPGTSGFVGEFMVILGAIQENFWYAFLASFTLIFGAAYT 432 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 LW+ ++V +G KV LKDL RE ++ +AVL + GIYP P+ D + ++ ++ Sbjct: 433 LWMVKRVFYGEIANAKVAALKDLCQREFLILAILAVLVLALGIYPQPLTDMTNATVTQLL 492 Query: 485 EN 486 + Sbjct: 493 SH 494 >gi|23464596|ref|NP_696964.1| NADH dehydrogenase subunit 4L [Monosiga brevicollis ATCC 50154] gi|23344059|gb|AAN28335.1| NADH dehydrogenase subunit 4L [Monosiga brevicollis] Length = 498 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 213/455 (46%), Positives = 310/455 (68%), Gaps = 13/455 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH-----LGVDGISILLVV 90 +ALG S + + SL +W FD S FQ I +WI+ + + LG+DGIS++ ++ Sbjct: 36 IALGTSILTLLESLRLWFHFDYSTSKFQYILKLNWINDELTSNSWNIVLGIDGISLVFII 95 Query: 91 LTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 LTT L P CILSSW S++ + Y+I+FLV+E ++IG F LD+ FYI FE LIPM++ Sbjct: 96 LTTLLIPICILSSWDSVKILVKGYLISFLVIEILLIGVFTILDIFGFYILFEGVLIPMYL 155 Query: 151 IIGVWGGSE-RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 IIG+WG E +I A Y FF YT GS+ ML I+ + T+ + L P + Q Sbjct: 156 IIGIWGSREQKITAGYYFFFYTLIGSVLMLIGILYLYSISGTTDYLTLLGYEIDP-TAQK 214 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 ++++AFF S A+KIP FPFH WLP AHV+AP AGSV LAGI++K+GGYG IRF +PL P Sbjct: 215 YLFLAFFASLAVKIPKFPFHIWLPQAHVEAPVAGSVILAGILIKLGGYGFIRFTIPLLPD 274 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 AS YFAP++F L ++A+IYASL ++ QTD+K++IAYSS++HMG V++GIF+ +G+ G+ Sbjct: 275 ASHYFAPLVFILGVLAVIYASLTTLRQTDLKRIIAYSSVSHMGLVSLGIFTLTANGIMGS 334 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F L+HGLVSSALF V V+YDR HTR + Y G+ MP Y+ + + FT+AN+ +P + Sbjct: 335 IFLQLAHGLVSSALFIIVTVLYDRHHTRLVKYYRGMTVTMPIYSFLFLFFTLANIAVPLS 394 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG------VSKCEKVQQ 443 F+GEFL ++++F+ + TVA+LAS G++LSA YSL+LY +V FG + + Sbjct: 395 CNFVGEFLCLLAIFEVNTTVAILASLGIILSACYSLFLYNRVCFGSFSTYLSNNSYHLLS 454 Query: 444 LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +KD+S RE +++P+ +LT+ G+YP PI D ++ Sbjct: 455 IKDVSRREFFVLFPLVILTIILGVYPHPIFDLLNI 489 >gi|284106857|ref|ZP_06386300.1| NADH dehydrogenase subunit M [Candidatus Poribacteria sp. WGA-A3] gi|283830036|gb|EFC34312.1| NADH dehydrogenase subunit M [Candidatus Poribacteria sp. WGA-A3] Length = 520 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 222/486 (45%), Positives = 334/486 (68%), Gaps = 9/486 (1%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L++V FLP LGV IL VALG+S++ F+ SL W++FD+ + Q Sbjct: 7 PWLTLVVFLPLLGVAAILLVEEALAKW-----VALGVSSLGFLVSLAPWALFDESTPAMQ 61 Query: 64 MIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E + WI +Y +GVDGIS+ LV+LTT LTP C++ SW +IQ RE+MI+ LV+E Sbjct: 62 FVETHQWIASPSINYAVGVDGISLPLVLLTTLLTPLCVVVSWTAIQTRVREFMISLLVME 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + +G F+SLD +LFY+F+E LIPM+++IG+WGG R+YAA KFFLYT GS+ +L AI Sbjct: 122 TATLGVFVSLDFVLFYVFWETMLIPMYLLIGIWGGPNRVYAAIKFFLYTLAGSVLLLVAI 181 Query: 183 VVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 +V+ + S D+ +S ++P +Q W++ AFF +FA+K+PMFPFHTWLP+AHV+AP Sbjct: 182 IVLYFYAGAESF-DILTLSDAEYPPWLQAWLFWAFFAAFAVKVPMFPFHTWLPDAHVEAP 240 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA ++LK+G YG +RF LP+ P A+Q F V+ FLS++AIIY + ++ Q D+K Sbjct: 241 TAGSVMLASVLLKLGAYGFLRFSLPMLPDATQQFTSVVLFLSVVAIIYGAYMAFAQADLK 300 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS++HMG+VT+GIF G+EGA+ QM++HG+ + ALF CVG++Y+R H+R+I Sbjct: 301 KLIAYSSVSHMGFVTLGIFVLNAQGIEGAILQMVNHGITTGALFLCVGIVYERTHSREIV 360 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL +MP YA +++F ++++GLPG + F+GEF V++ F + VA +A+ GV+L+ Sbjct: 361 DNSGLATSMPVYATFLVIFALSSVGLPGMNSFVGEFFVLVGAFMWNKAVAAVAALGVILA 420 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y LW+ ++VV+G +L D++ E M+ P+A L + G+YP P+ D + Sbjct: 421 AAYILWMLQRVVYGTPAKHMSSKLYDMNWCEIGMLAPLAFLVFWIGLYPKPLLDVMHASV 480 Query: 481 SSIIEN 486 +++ Sbjct: 481 DHLVQK 486 >gi|88812964|ref|ZP_01128207.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Nitrococcus mobilis Nb-231] gi|88789742|gb|EAR20866.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Nitrococcus mobilis Nb-231] Length = 501 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 223/499 (44%), Positives = 328/499 (65%), Gaps = 18/499 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ +LP LG ++L + G + + +ALG + F+ S ++ F+ G + Q + Sbjct: 2 LSLLIWLPILGGILVLAAGERSQGTTARW-LALGTGGVVFLLSSALYFGFEIGTPAMQFV 60 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E WI F YHLGVDGIS+ L++LTTF T I++ W+ IQ +Y+ AFL++E + Sbjct: 61 ERLAWIPAFEVYYHLGVDGISMPLILLTTFATVLVIIAGWEVIQYKQTQYLAAFLIMEGL 120 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F +LD +LFY+F+EA L+PMF+IIG+WGG RIYA KFFLYTF GS+ ML A++ Sbjct: 121 MVGVFSALDAILFYVFWEAMLVPMFLIIGIWGGPNRIYATIKFFLYTFMGSVLMLVALIY 180 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + ++ + I+D + + S Q +++AF +FA+K+PM+P HTWLP+AHV+APT GS Sbjct: 181 LRYQTDSFGILDFHG-TALALSQQVLIFLAFLVAFAVKVPMWPVHTWLPDAHVEAPTGGS 239 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 V LA IMLK+G YG +RF LP+ P AS A ++ LSLIA++Y LV++VQ D+KKLIA Sbjct: 240 VILAAIMLKIGAYGFLRFSLPITPAASMELAWLLIALSLIAVVYIGLVAIVQEDMKKLIA 299 Query: 305 YSSIAHMGYVTIGIFS---------------GMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 YSS+AHMG+VT+G F+ G +EG + QM+SHG VS ALF CVGV Sbjct: 300 YSSVAHMGFVTLGFFAIFDIFAHTGGVEGSGGAVMALEGGVVQMISHGFVSGALFLCVGV 359 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 +YDR+H+R I YGG+ + MP +A ++F MAN+GLPGTSGF+GEF+VI++ FQ + Sbjct: 360 LYDRVHSRLIKDYGGVANRMPIFAAFFVLFAMANVGLPGTSGFVGEFMVILASFQANFWY 419 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A LA+ ++L A Y+LWL ++VV+G +V L DL+ RE ++ +A + GI+P Sbjct: 420 AALAALTLILGAAYTLWLIKRVVYGEVANAQVAALTDLNAREFIVLGVLAGAVLLLGIWP 479 Query: 470 VPIRDTFSVPLSSIIENYT 488 P+ + L +++ T Sbjct: 480 APLIEVMEPSLQHLLQQVT 498 >gi|84508619|ref|YP_448666.1| NADH dehydrogenase subunit 4 [Desmarestia viridis] gi|45925651|gb|AAS79052.1| NADH dehydrogenase subunit 4 [Desmarestia viridis] Length = 482 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 218/454 (48%), Positives = 301/454 (66%), Gaps = 15/454 (3%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 ALGI++ F+FSLF+W FD+ S FQ + W+ + LGVDGIS+ ++LTT + Sbjct: 32 ALGITSAVFVFSLFLWLGFDQSTSKFQFVIDSLWLPLANINLILGVDGISLFFIILTTLI 91 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P C+L+SW + + + Y+I+FL +E +++ F +LD+L FYIFFE LIPMF++IG+W Sbjct: 92 FPLCLLASWSFDKGSVKSYLISFLSMELVLLLVFTNLDLLFFYIFFETVLIPMFLVIGIW 151 Query: 156 GGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMW 212 G +R I AAY FFLYT GS+FML +V + T+ D A+S FS Q W+W Sbjct: 152 GSRQRKIRAAYMFFLYTLLGSLFMLIGVVYIYLFAGTT---DYEALSVVGFSSYDQKWLW 208 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 +AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L L PLAS Sbjct: 209 LAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLLPLASV 268 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 YF P++F LSL ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G G+E A+ Q Sbjct: 269 YFTPLVFSLSLFGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGIEAALLQ 328 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 LSHG VSSALF +GV+YDR H+R + YGGL H MP + + + FTMAN+GLPGTS F Sbjct: 329 SLSHGFVSSALFLIIGVLYDRWHSRVVKYYGGLTHTMPIFITIFLFFTMANLGLPGTSSF 388 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 +GEFL+++S F+ + T A+ ++L YSLWL+ ++ +G K DLS RE Sbjct: 389 VGEFLLLVSAFEANTTACFFAATSMILGGGYSLWLFNRIAYGNVKIVGF----DLSFREF 444 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P+ + T+ GIYP F P+ + + N Sbjct: 445 VLFLPLVIGTLVMGIYP----HIFFSPMHATVSN 474 >gi|976350|gb|AAA75278.1| NADH dehydrogenase subunit 4 [Lactuca sativa] Length = 495 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 218/453 (48%), Positives = 302/453 (66%), Gaps = 3/453 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTF 94 + L S I F++S + FD + Q +E W+ Y ++LG+DGIS+ V+LTTF Sbjct: 40 IGLCASLITFLYSPVLRIQFDPSTAKSQFVESLRWLPYENIHFYLGIDGISLFFVILTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CIL W ++ +EY+ A L+ E ++I F LD LLFY+ E+ LIPMF+IIGV Sbjct: 100 LIPICILVGWSGMRSYGKEYITASLIREFLMIAVFRMLDPLLFYVLPESVLIPMFIIIGV 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+ FLYT GS+FML AI+++ ++ T+ + + ++F Q ++WI Sbjct: 160 WGSRQRKIKAAYQLFLYTLLGSVFMLLAILLILFQTGTTDL-QILLTTEFSERRQIFLWI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF SFA+K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +P+FP A+ Sbjct: 219 AFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLC 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P I+ LS IAIIY SL ++ Q D+KK+IAYSS+AHM VTIG+FS G+ G++ M Sbjct: 279 FTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSLNIQGIGGSILLM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLVSSALF CVGV+Y R TR + YGGLV MP ++ + FT+ANM LPGTS FI Sbjct: 339 LSHGLVSSALFLCVGVLYVRHKTRLVRYYGGLVSTMPNFSTIFFFFTLANMSLPGTSSFI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+++ FQ ++ VA LA+ G++L A YSLWLY +VV G K + + + DL+ E Sbjct: 399 GEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLHKFSDLNGTEVF 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V V+ G+YP D +S+++++ Sbjct: 459 IFIPFLVGVVWMGVYPKVFPDCMHTSVSNLVQH 491 >gi|9653250|ref|NP_062496.1| NADH dehydrogenase subunit 4 [Chondrus crispus] gi|1352567|sp|P48915|NU4M_CHOCR RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|1334501|emb|CAA87623.1| NADH dehydrogenase (ubiquinone), subunit 4 [Chondrus crispus] Length = 492 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 238/474 (50%), Positives = 328/474 (69%), Gaps = 8/474 (1%) Query: 1 MNLPF---LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 MNL L + + P +GVF++L + AL IS + F+FSL +W F+ Sbjct: 1 MNLKLFNPLILTSLTPLIGVFILLLIP--SAKEKLCRNFALWISCLTFLFSLLLWIQFNS 58 Query: 58 GRSSFQMIEYYHWIDYFCSYH-LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 G S FQ + W +F Y+ +G+DGIS+ ++LTT L CIL SW SIQ N ++Y+I Sbjct: 59 GTSFFQFSTTFLWFPFFNLYYTIGIDGISLFFILLTTLLIISCILVSWSSIQTNLKDYLI 118 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGS 175 FL+LE ++I F LD+LLFYI+FE+ LIPMF+I+GVWG +R I AAY+FFLYT GS Sbjct: 119 CFLILEFLLIQVFSVLDLLLFYIYFESVLIPMFLIVGVWGSRQRKIRAAYQFFLYTLIGS 178 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 + ML A++ + ++ T+ + L+ + +F Q ++W++FF SFA+KIPM PFH WLP A Sbjct: 179 LLMLLALLNIYFQTGTTDLQILWYI-QFSEISQIFLWLSFFASFAVKIPMIPFHIWLPEA 237 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +APTAGSV LAGI+LKMGGYG +RF LP+FP+AS +F P IF LSL+AIIYASL ++ Sbjct: 238 HAEAPTAGSVILAGILLKMGGYGFLRFSLPMFPVASIFFTPFIFTLSLVAIIYASLTTLR 297 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+KK+IAYSS++HMG+VTIGIFS G+EG++ MLSHGLVSSALF C+GV+YDR Sbjct: 298 QIDLKKIIAYSSVSHMGFVTIGIFSLNIQGIEGSILLMLSHGLVSSALFLCIGVLYDRYK 357 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR I Y GL+ MP + V + FT AN+G PGTS FIGE LV++S FQ + T+ + AS Sbjct: 358 TRVIKYYSGLIQVMPLFGVFFLFFTFANLGFPGTSSFIGEVLVLLSSFQINKTLTLFASL 417 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G++ A YS+WL+ +++FG K +D+S RE ++ P+A+L ++ GIYP Sbjct: 418 GMIFGAAYSIWLFNRIIFGSLKLGYFSSFQDISRREFWILIPLAILILWMGIYP 471 >gi|149909807|ref|ZP_01898458.1| NuoM2 NADH-Ubiquinone/plastoquinone (complex I) oxidoreductase [Moritella sp. PE36] gi|149807139|gb|EDM67095.1| NuoM2 NADH-Ubiquinone/plastoquinone (complex I) oxidoreductase [Moritella sp. PE36] Length = 500 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 209/493 (42%), Positives = 322/493 (65%), Gaps = 8/493 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 ++P LSI+ FLP + ++ F S G ++ + ++F+ + ++ +FD + Sbjct: 13 SVPILSILIFLPAIAALLVPFLS----GNKTVRWFTFTVLFVDFLIATWLLVIFDNSTAQ 68 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E W+ +Y LGVDG+S+L + LT+ L C+L+SW +I + +E+MI L Sbjct: 69 MQFVESKPWVPSLGITYKLGVDGVSVLFLFLTSLLGWICVLASWTAIAKRIKEFMICLLA 128 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 ++S+++G F +LD+LLFY+F+EA L+PM+++IG+WGG +RIYAA+KFFLYT GS+ L Sbjct: 129 IQSLMLGVFCALDLLLFYVFWEAMLVPMYLMIGIWGGEDRIYAAFKFFLYTLAGSLIFLV 188 Query: 181 AIVVMCWEK-KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 I+V+ + +T I+ L +S + F +Q ++IAF +FA+K+PM PFHTWLP+AHVQA Sbjct: 189 GILVLYFAGGRTFDILTLMDVS-YDFELQRGVFIAFLIAFAVKVPMVPFHTWLPDAHVQA 247 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGS+ LAG++LKMG YG IRF LP+ P AS YFAP++ LS +AI+Y +++ Q DI Sbjct: 248 PTAGSIILAGVLLKMGAYGFIRFSLPMLPDASHYFAPLMQGLSAVAIVYGGFLALAQQDI 307 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSSI+HMG++T+G+F+ +G GA+ QM +HG+ + ALF +G++Y+R H+RDI Sbjct: 308 KKLIAYSSISHMGFITLGLFTFTINGTTGAVIQMFNHGITTGALFLFIGLVYERTHSRDI 367 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGGL+ +P Y + +F +++M +PGT+GFIGE LV+ F +N A G +L Sbjct: 368 PAYGGLLKAVPFYGIFFALFLLSSMAVPGTNGFIGEILVLSGTFGVNNWAATAGVLGALL 427 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 A Y L +YR+++ G + ++ DL+ RE C P+ + + G YP P Sbjct: 428 GAAYLLGIYRQMLLGPIRIPDAAKMWDLNKRELCCALPLLIFVFWIGFYPKPFLSILQPT 487 Query: 480 LSSIIENYTLKTG 492 L ++E TL G Sbjct: 488 LKHLLEQ-TLGAG 499 >gi|258593439|emb|CBE69778.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M) (NDH-1, chain M) [NC10 bacterium 'Dutch sediment'] Length = 554 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 216/489 (44%), Positives = 312/489 (63%), Gaps = 21/489 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 + P LS++T+LP +G+ V+ L G R AL + + + SL++ + FD Sbjct: 4 LEFPILSLMTYLPLVGMVVLALLPKESKNGIR---WTALAFTVADLLVSLWIPAYFDSTT 60 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q +E WI +Y G+DGI++ LV+LTT L+ ++ SW+S+ +EY Sbjct: 61 AEMQFVEKVSWIPSIGVTYFFGLDGITLWLVMLTTSLSVITVVCSWESVSMRLKEYYAFM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+LE+ ++G F S+D LFYIF+E L+PM+ +IG+WG R+Y+A KFFLYT FG + M Sbjct: 121 LMLETGMLGVFFSMDFFLFYIFWEVMLVPMYFLIGIWGSDRRLYSAIKFFLYTLFGGVIM 180 Query: 179 LFAIVVMCW---EKKTSSIIDLYAMSK-------------FPFSIQYWMWIAFFCSFAIK 222 L I+ + + + + D++ + K P S Q +W+AFF FAIK Sbjct: 181 LLGILAVYFYHGAETGTYTFDIFELMKVSYPSTPVVTLLGIPLSFQDLVWLAFFLGFAIK 240 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFPFHTWLP+AH APTAGSV LAG++LKMG YG IRF LP+ P A+Q+F P+I LS Sbjct: 241 VPMFPFHTWLPDAHTDAPTAGSVILAGVLLKMGTYGFIRFNLPMLPEATQHFVPMIMTLS 300 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 +IAIIY +LV MVQTD+K+LIAYSS++HMG+V +G+F+ GV+GA+ QM++HGL + A Sbjct: 301 IIAIIYGALVCMVQTDMKRLIAYSSVSHMGFVMLGMFALNFQGVQGAIIQMINHGLSTGA 360 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF VG+IYDR HTR I +GGL MP Y+ + + ++MGLPG +GFIGEFL+++ Sbjct: 361 LFLIVGLIYDRRHTRQISEFGGLSKQMPVYSTLFAIIMFSSMGLPGLNGFIGEFLILVGA 420 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 F+ + A A G+VL A Y LWL+++ +FG + K L DLS RE + PI ++ Sbjct: 421 FKVNYVYAAFAVTGIVLGAAYMLWLFQRTMFGALENPKNANLPDLSARELTTLVPIVIMC 480 Query: 463 VFFGIYPVP 471 + G+YP P Sbjct: 481 FWIGLYPSP 489 >gi|74317172|ref|YP_314912.1| NADH dehydrogenase subunit M [Thiobacillus denitrificans ATCC 25259] gi|74056667|gb|AAZ97107.1| NADH dehydrogenase I chain M [Thiobacillus denitrificans ATCC 25259] Length = 494 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 203/433 (46%), Positives = 295/433 (68%), Gaps = 1/433 (0%) Query: 55 FDKGRSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD S+ Q +E WI F YHLGVDGIS+ L++L +F+T +++ W+ IQ+ + Sbjct: 55 FDNATSAMQFVEKKSWIPAFNVFYHLGVDGISMPLILLNSFVTVLVVIAGWQVIQDKVAQ 114 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 YM AFL++ ++ GAF +LD +LFY+FFE LIP+++I+GVWGG R+YAA+KFFLYT Sbjct: 115 YMAAFLIMSGLINGAFAALDGILFYVFFEGMLIPLYLIVGVWGGPNRVYAAFKFFLYTLL 174 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 GS+ ML +++ + ++ S I + + + Q M+ AF +F +K+PM+P HTWLP Sbjct: 175 GSLLMLVSLIYLYFQSGGSFDIQSWYTTPLSMTAQTLMFFAFLLAFGVKVPMWPVHTWLP 234 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AHV+APT GSV LA I LK+G YG +RFLLP+ P A+ +A + LSLIA+ Y LV+ Sbjct: 235 DAHVEAPTGGSVVLAAITLKVGAYGLVRFLLPIVPDAAHEYAWFVITLSLIAVAYIGLVA 294 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 +VQ D+KKLIAYSSIAHMG+VT+G F G EG + QM+SHG VS+ALF C+GV+YDR Sbjct: 295 LVQADMKKLIAYSSIAHMGFVTLGFFLFNPLGWEGGLVQMISHGFVSAALFLCIGVMYDR 354 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 LH+R I YGGLV+ MP +A M+F MAN GLP TSGF+GEF+VIM+ + + A +A Sbjct: 355 LHSRQIKDYGGLVNRMPVFAAFFMLFAMANSGLPATSGFVGEFMVIMAATEVNFWFAFVA 414 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 + ++ A Y+LW+Y++VVFG +V Q++D++ RE ++ +A+ + G+YP P Sbjct: 415 ATTLIFGAAYTLWMYKRVVFGSVTNSRVAQMRDVNAREILLLGLLALFVLGMGLYPKPFT 474 Query: 474 DTFSVPLSSIIEN 486 D + ++ + Sbjct: 475 DVMHASVVDLLAH 487 >gi|302879329|ref|YP_003847893.1| proton-translocating NADH-quinone oxidoreductase, chain M [Gallionella capsiferriformans ES-2] gi|302582118|gb|ADL56129.1| proton-translocating NADH-quinone oxidoreductase, chain M [Gallionella capsiferriformans ES-2] Length = 496 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 221/488 (45%), Positives = 326/488 (66%), Gaps = 10/488 (2%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKG 58 LP +S+ +LP L G+ V+ G + + L + S + + ++ +++ FD Sbjct: 4 GLPVISVTIWLPILFGILVL----ATGDDKNAPLARLLALVGSVLGCLVTIPLYTGFDIS 59 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 S+ Q +E + WI F YHLGVDGIS+L ++L +F T +L+ WK I++ YM A Sbjct: 60 TSNMQFVELHDWITRFNIHYHLGVDGISMLFILLNSFFTVIVVLAGWKVIEKRVAMYMAA 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FLV+ +V G F +LD +LFY+F+EA LIPMF+IIG+WGG RIYA KFFLYT GS+ Sbjct: 120 FLVMSGIVNGVFAALDSILFYVFWEAMLIPMFIIIGIWGGPNRIYATMKFFLYTLLGSLL 179 Query: 178 MLFAIVVMCWEKKTS-SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML A++ + S +I+D + ++ P + Q ++IAFF +FA+K+PMFP HTWLP+AH Sbjct: 180 MLVALIYLYNLSGGSFAILDFHHLA-IPMTAQILIFIAFFFAFAVKVPMFPVHTWLPDAH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT GSV LA IMLK+G YG +RF +P+ P AS A V+ LSLIAI+Y LV+++Q Sbjct: 239 VEAPTGGSVVLAAIMLKVGAYGFLRFSMPITPDASHKLAGVMIALSLIAIVYIGLVALMQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 +D+KKL+AYSSI+HMG+VT+G+F G+EGA+ QMLSHG V+ ALF C+GV+YDR+H+ Sbjct: 299 SDMKKLVAYSSISHMGFVTLGLFIFNAYGMEGALLQMLSHGFVAGALFLCIGVLYDRVHS 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I YGG+V+ MP +A M+F MAN GLPGTS F+GEF+VIM + + A A+ Sbjct: 359 RQIADYGGVVNKMPVFAAFFMLFAMANSGLPGTSAFVGEFMVIMGTIKVNFWYAFAAAST 418 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++ A Y+LW+Y++V+FG V++L D++ RE ++ +A + GIYP+P+ + Sbjct: 419 LIFGAAYTLWMYKRVIFGAVTNHHVEELTDINAREILIMTILAFFVLAMGIYPLPVSEIL 478 Query: 477 SVPLSSII 484 ++ ++ Sbjct: 479 HASVNDLL 486 >gi|257095307|ref|YP_003168948.1| NADH dehydrogenase subunit M [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047831|gb|ACV37019.1| proton-translocating NADH-quinone oxidoreductase, chain M [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 494 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 216/493 (43%), Positives = 320/493 (64%), Gaps = 12/493 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGRSS 61 P LS+ ++P L V+L + G R + L + + + ++ +++ FD + Sbjct: 5 PLLSLAIWIPILAGLVVLAT---GSDRNAPLARMLSLLGAVAGLLVTIPLYTGFDMLTPA 61 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E WI F +YHLGVDGIS+L V+L +F+T IL+ W+ I +Y FL+ Sbjct: 62 MQFVELKTWIPRFNVNYHLGVDGISMLFVILNSFITVTVILAGWQVIDSKVAQYNAGFLI 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + ++ G F +LD LLFY+FFEASLIP+++IIG+WGG R+YAA+KFFL+T GS+ L Sbjct: 122 MSGLLNGIFSALDGLLFYVFFEASLIPLYLIIGIWGGPRRVYAAFKFFLFTLMGSLLFLI 181 Query: 181 AIVVMCWEKKTS-SIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A++ M + S SI+D + M + P Q W+++AF +FA+K+PM+P HTWLP+AHV Sbjct: 182 ALLYMFIQSGGSFSILDWHQMPLGRTP---QTWLFLAFLIAFAVKVPMWPVHTWLPDAHV 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APT GS+ LA I LK+G YG +RF LP+ P AS + ++ LSLIAIIY V++ Q Sbjct: 239 EAPTGGSIVLAAIALKLGAYGFLRFSLPIAPDASHQLSGLVIGLSLIAIIYIGFVALAQE 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KKL+AYSSIAHMG+VT+G F GVEGA+ QM+SHG VS A+FF +GV+YDR H+R Sbjct: 299 DMKKLVAYSSIAHMGFVTLGFFMFSALGVEGALVQMISHGFVSGAMFFSIGVMYDRAHSR 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG+V+ MP++A M+F MAN GLP TSGF+GEF+VI++ + + VA A+ + Sbjct: 359 QIADYGGVVNRMPKFAAFFMLFAMANAGLPATSGFVGEFMVILAAVEYNFWVAFAAASTM 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 ++ A Y+LW+Y++VVFG V +L D++ RE ++ AV + G+YP P + Sbjct: 419 IVGAAYTLWMYKRVVFGAVANHHVAELTDINGREFFILALFAVGALGMGLYPQPFTEVMH 478 Query: 478 VPLSSIIENYTLK 490 ++ ++ + L Sbjct: 479 SSVNELLRHVALS 491 >gi|321401337|gb|ADW83092.1| NADH dehydrogenase subunit 4 [Pavlova lutheri] Length = 478 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 222/448 (49%), Positives = 309/448 (68%), Gaps = 3/448 (0%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLT 96 ALG +++ F SL + FD+ S FQ EY+ W F + LGVDG+S+ L++LTTFL Sbjct: 32 ALGSTSLAFFVSLNLIVFFDETFSGFQFKEYFMWTPSF-QFALGVDGLSLYLIILTTFLF 90 Query: 97 PFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG 156 P C+L +W +++ +EY IA L+LES +I F LD+ LFYI FEA+L+PMF I+GVWG Sbjct: 91 PVCVLIAWSAVKTYTKEYFIALLLLESFLIAVFTLLDLFLFYIAFEATLLPMFFIVGVWG 150 Query: 157 G-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF 215 S RI AAY+ FLYT FGS+FML I+ + W ++ ++ + + F S Q ++W+AF Sbjct: 151 SRSRRINAAYQLFLYTLFGSVFMLIGILYI-WYTTGTTNYEILSQTSFSSSDQIFLWLAF 209 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 F SFA+KIPM PFH WLP AHV+APTAGSV LAG++LK+GGYG +RF + L P A+ +F+ Sbjct: 210 FLSFAVKIPMVPFHIWLPEAHVEAPTAGSVILAGVLLKLGGYGLLRFSVGLLPFATSFFS 269 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 P + LSL+ IIYASL ++ Q D+KK++AYSSIAHMG+VT+GIFS G+EG++ MLS Sbjct: 270 PFVISLSLLGIIYASLSTLQQVDLKKIVAYSSIAHMGFVTLGIFSLNIFGLEGSVILMLS 329 Query: 336 HGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGE 395 HG++SSALF VGV+YDR HTR + YGGLV MP ++ +V ++AN+ LP TS FIGE Sbjct: 330 HGVISSALFLLVGVLYDRFHTRLVRNYGGLVQTMPLFSTAFLVLSLANLSLPLTSSFIGE 389 Query: 396 FLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 V++ FQNS A+ + F +VL A YS+WL ++ FG K DL+ RE ++ Sbjct: 390 IFVVLGAFQNSPVSALFSCFSMVLGAAYSIWLANRICFGNVKTTSSTASFDLTRRESFIL 449 Query: 456 YPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 +P +LT+F G++P I T V ++S+ Sbjct: 450 FPFIILTLFLGVFPEVILQTLHVSVASL 477 >gi|145932442|ref|YP_001165354.1| NADH dehydrogenase subunit 4 [Phytophthora ramorum] gi|110169640|gb|ABG54105.1| NADH dehydrogenase subunit 4 [Phytophthora ramorum] gi|188038004|gb|ACD46622.1| NADH dehydrogenase subunit 4 [Phytophthora ramorum] Length = 491 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 211/425 (49%), Positives = 298/425 (70%), Gaps = 5/425 (1%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKS 106 SL +W +FDK S+FQ + WI F +++LG+DGIS+ ++LTTFL P C+L S++ Sbjct: 45 SLPLWILFDKSTSNFQYLFKIEWISQFNINFYLGLDGISLFFIILTTFLIPICMLISYEI 104 Query: 107 IQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAY 165 I +N +EY I + +LE +I +F LD+L+FYIFFE+ LIPMF+IIG+WG ER I A+Y Sbjct: 105 INKNIKEYFILYFILEFCLIISFSVLDILIFYIFFESVLIPMFLIIGIWGSRERKIKASY 164 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPM 225 FF+YT GS+FM AI+ + T+ LY S F FS + ++AFF SFA+K+PM Sbjct: 165 LFFMYTLAGSLFMFIAIIHLFLTVGTTDYQILY-YSNFNFSYEKLYFLAFFLSFAVKVPM 223 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 PFH WLP AHV+APTAGSV LAGI+LK+G YG IRFL+PLFP A+ YF P I L LI+ Sbjct: 224 LPFHVWLPEAHVEAPTAGSVLLAGILLKLGSYGMIRFLVPLFPKAALYFTPYILVLCLIS 283 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 IIYASL ++ QTD+K++IAY+S+AHM ++ +GIFS G+EG++ QM+SHGLVSS LFF Sbjct: 284 IIYASLTAIRQTDLKRIIAYASVAHMNFIILGIFSLTIQGLEGSIIQMISHGLVSSGLFF 343 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 +G +YDR HTR I YGGL H MP + + + ++ +ANM +PG+S F+GE L++ VF++ Sbjct: 344 SIGCLYDRYHTRFINYYGGLAHTMPLFCIALFIYVLANMSIPGSSSFVGEILILTGVFED 403 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF- 464 + T AV A+ G+ L +YSL Y ++ +G + +Q DL+ RE +++ I + +F Sbjct: 404 NTTTAVFATIGMFLGGVYSLLFYNRICYGNIQNIYLQIYYDLTYRE-FLIHLILIANIFL 462 Query: 465 FGIYP 469 G+YP Sbjct: 463 LGLYP 467 >gi|145589222|ref|YP_001155819.1| proton-translocating NADH-quinone oxidoreductase, chain M [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047628|gb|ABP34255.1| NADH dehydrogenase subunit M [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 488 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 205/447 (45%), Positives = 301/447 (67%), Gaps = 2/447 (0%) Query: 41 STINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFC 99 + I+FI +L + FD Q +E WI Y +YHLG+DGIS+ +VLT F+ F Sbjct: 37 AVISFIATLPLVLNFDIANPGMQFVEKMSWIPRYDINYHLGIDGISVWFIVLTAFINIFV 96 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 ++++W+ I+ +YM +F++L ++IG F +LD LLFY+FFEA+LIPM++IIGVWGG Sbjct: 97 VIAAWEVIETKVSQYMASFMILSGLMIGVFCALDALLFYVFFEATLIPMYIIIGVWGGHN 156 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF 219 RIYAA+KFFLYT GS+ L A++ + T I+ + ++ Q ++ AFF +F Sbjct: 157 RIYAAFKFFLYTLLGSLLTLVAMLYLYNVTNTFDILT-WQNARLDIVEQILLFFAFFMAF 215 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 A+K+PM+P HTWLP+ HV+APT GSV LA IMLK+G YG +RF LP+ P ASQY P + Sbjct: 216 AVKVPMWPLHTWLPDVHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASQYLGPFVI 275 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 FLSL+A+IY V++VQ D+KKL+AYSS+AHMG+VT+G F G+EG + QM+SHG V Sbjct: 276 FLSLVAVIYVGAVALVQKDMKKLVAYSSVAHMGFVTLGFFLFSPLGIEGGIVQMISHGFV 335 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 + A+F +GV+YDR+HTR I YGG+VH MP + ++ MAN GLP TSGF+GEF+VI Sbjct: 336 AGAMFLSIGVLYDRMHTRQIADYGGVVHRMPAFTAFAVLMAMANCGLPATSGFVGEFMVI 395 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIA 459 ++ + +LA+ ++L A YSLW+ ++V FG V++LKDL+ RE M+ ++ Sbjct: 396 LAAVDYDFVIGILAATALILGAAYSLWMVKRVFFGAVNNAHVEELKDLNFREYFMMAVLS 455 Query: 460 VLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + + G+YP P D + +++++ Sbjct: 456 ICVIGMGVYPKPFTDIIHPAVINLLQH 482 >gi|145932349|ref|YP_001165397.1| NADH dehydrogenase subunit 4 [Phytophthora sojae] gi|110169592|gb|ABG54058.1| NADH dehydrogenase subunit 4 [Phytophthora sojae] Length = 491 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 208/425 (48%), Positives = 298/425 (70%), Gaps = 5/425 (1%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKS 106 SL +W +FDK S+FQ + WI F +++LG+DGIS+ ++LTTFL P C+L S++ Sbjct: 45 SLPLWILFDKSTSNFQYLFKIEWISQFNINFYLGLDGISLFFIILTTFLIPICMLISYEI 104 Query: 107 IQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAY 165 I +N +EY I + +LE +I +F LD+L+FYIFFE+ LIPMF+IIG+WG ER I A+Y Sbjct: 105 INKNIKEYFILYFILEFCLIISFSVLDILIFYIFFESVLIPMFLIIGIWGSRERKIKASY 164 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPM 225 FF+YT GS+FM AI+ + T+ LY S F FS + ++AFF SFA+K+PM Sbjct: 165 LFFMYTLTGSLFMFIAIIHLFLTVGTTDYQILY-YSNFNFSYEKLYFLAFFLSFAVKVPM 223 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 PFH WLP AHV+APTAGSV LAGI+LK+G YG IRFL+PLFP A+ YF P I L LI+ Sbjct: 224 LPFHVWLPEAHVEAPTAGSVLLAGILLKLGSYGMIRFLVPLFPKATLYFTPYILVLCLIS 283 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +IYASL ++ QTD+K++IAY+S+AHM ++ +GIFS G+EG++ QM+SHGLVSS LFF Sbjct: 284 VIYASLTAIRQTDLKRIIAYASVAHMNFIILGIFSLTIQGLEGSIIQMISHGLVSSGLFF 343 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 +G +YDR HTR I YGGL H MP + + + ++ +ANM +PG+S F+GE L++ +F++ Sbjct: 344 SIGCLYDRYHTRFINYYGGLAHTMPLFCIALFIYVLANMSIPGSSSFVGEILILTGIFED 403 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF- 464 + T AV A+ G+ L +YSL Y ++ +G + ++ DL+ RE +++ I + +F Sbjct: 404 NTTTAVFATIGMFLGGIYSLLFYNRICYGNIQNIYLKIYYDLTYRE-FLIHLILIANIFL 462 Query: 465 FGIYP 469 G+YP Sbjct: 463 LGLYP 467 >gi|296117466|ref|ZP_06836053.1| proton-translocating NADH-quinone oxidoreductase, chain M [Gluconacetobacter hansenii ATCC 23769] gi|295975987|gb|EFG82778.1| proton-translocating NADH-quinone oxidoreductase, chain M [Gluconacetobacter hansenii ATCC 23769] Length = 505 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/483 (42%), Positives = 316/483 (65%), Gaps = 3/483 (0%) Query: 5 FLSIVTFLPFLGVFVILFS-SYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS+VT+LP GV I+ + S VAL S I F+ S+ +W FD Q Sbjct: 5 LLSLVTYLPLGGVLAIMLTRGTTEAVETSARWVALWTSAIVFVLSVVMWVQFDPTHIGLQ 64 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + W F SYH GVDGIS++ V+L+TFLTP I+ WK + R+YM+A L+LE Sbjct: 65 FEQRATWASAFGVSYHAGVDGISLMFVLLSTFLTPLAIIGGWKLVNTRVRDYMVAMLLLE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + +IG F + D++LFY+F+EA+L+P ++IG+WGG +R++A+ +FFL+TF GS+FML A+ Sbjct: 125 TTLIGLFSAQDLVLFYVFYEATLLPGSLMIGIWGGPKRVWASLQFFLFTFGGSLFMLIAL 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 +VM W ++ I + F ++Q W+ F +F +K+P+FP H WLP+A+ +APT Sbjct: 185 LVM-WNVAGTTDIPALQHASFSHAMQGWLLAGFILAFGVKLPLFPLHAWLPDAYTEAPTP 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 SV L+G++ K G YG +RF + +FP A++ FAP I L ++A+IYA+++++ QTD+K++ Sbjct: 244 ASVMLSGVLSKAGAYGLLRFGVLMFPDAARVFAPYILTLGVVAVIYAAIIALAQTDMKRV 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS +HMG + IG+F+ G++GA+FQMLSHG+V +ALFFCV + R TR+I A+ Sbjct: 304 IAYSSFSHMGVIAIGLFTLTPEGIDGAIFQMLSHGIVIAALFFCVSAVSWRAETREISAF 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G+ H MP A + M+F MAN+GLPGT F+GE LV++ S +A L ++L A+ Sbjct: 364 AGVAHKMPVLATLTMLFVMANIGLPGTGAFVGELLVMVGAIHVSFWLAFLGGSSMILGAV 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y L LYR+V+FG V L+DL+ E ++ P+AV+T++ GI+P F+ +SS Sbjct: 424 YMLVLYRRVMFGQGAGGMVALLRDLTGPELAVLVPLAVVTLWMGIHPGTFLRVFNPTVSS 483 Query: 483 IIE 485 +++ Sbjct: 484 LVQ 486 >gi|9695383|ref|NP_037605.1| NADH dehydrogenase subunit 4 [Phytophthora infestans] gi|6692636|gb|AAF24779.1|U17009_11 NADH dehydrogenase subunit 4 [Phytophthora infestans] gi|58012141|gb|AAW62549.1| NADH dehydrogenase subunit 4 [Phytophthora infestans] gi|58201980|gb|AAW67035.1| NADH dehydrogenase subunit 4 [Phytophthora infestans] gi|58202027|gb|AAW67081.1| NADH dehydrogenase subunit 4 [Phytophthora infestans] Length = 491 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/440 (47%), Positives = 302/440 (68%), Gaps = 5/440 (1%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKS 106 SL +W +FDK S+FQ + WI F +++LG+DGIS+ ++LTTFL P C+L S++ Sbjct: 45 SLPLWILFDKSTSNFQYLFKIEWISQFNINFYLGLDGISLFFIILTTFLIPICMLISYEI 104 Query: 107 IQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAY 165 I +N +EY I + +LE +I +F LD+L+FYIFFE+ LIPMF+IIG+WG ER I A+Y Sbjct: 105 ITKNIKEYFILYFILEFCLIISFSVLDILIFYIFFESVLIPMFLIIGIWGSRERKIKASY 164 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPM 225 FF+YT GS+FM AI+ + T+ LY S F FS + ++AFF SFA+K+PM Sbjct: 165 LFFMYTLAGSLFMFIAIIHLFLTVGTTDYQILY-YSNFNFSYEKLYFLAFFLSFAVKVPM 223 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 PFH WLP AHV+APTAGSV LAGI+LK+G YG IRFL+PLFP A+ YF P I L LI+ Sbjct: 224 LPFHVWLPEAHVEAPTAGSVLLAGILLKLGSYGMIRFLVPLFPKATLYFTPYILVLCLIS 283 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +IYASL ++ QTD+K++IAY+S+AHM ++ +GIFS G+EG++ QM+SHGLVSS LFF Sbjct: 284 VIYASLTAIRQTDLKRIIAYASVAHMNFIILGIFSLTIQGLEGSIIQMISHGLVSSGLFF 343 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 +G +YDR HTR I YGGL H MP + + + ++ +ANM +PG+S F+GE L++ +F++ Sbjct: 344 SIGCLYDRYHTRFINYYGGLAHTMPLFCIALFIYVLANMSIPGSSSFVGEILILTGIFED 403 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF- 464 + T AV A+ G+ L +YSL Y ++ +G + ++ DL+ RE +++ I + +F Sbjct: 404 NTTTAVFATIGMFLGGIYSLLFYNRICYGNIQNIYLKIYYDLTYRE-FLIHLILIANIFL 462 Query: 465 FGIYPVPIRDTFSVPLSSII 484 G+YP +S I+ Sbjct: 463 LGLYPKIFESCLHESVSKIL 482 >gi|200004028|ref|YP_002221363.1| NADH dehydrogenase subunit 4 [Blastocystis sp. DMP/02-328] gi|198385452|gb|ACH86046.1| NADH dehydrogenase subunit 4 [Blastocystis sp. DMP/02-328] Length = 487 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/452 (45%), Positives = 313/452 (69%), Gaps = 3/452 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 ++L +TI F S+F+ +F+K FQ + W+++F ++ +G+DGIS+ ++LTTF Sbjct: 33 ISLYSTTITFFISIFLLFLFNKSTIYFQGLYECKWLNFFNINFIIGIDGISLFFILLTTF 92 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CILSS+ I+ NF+ + I FL +ES++I F LD++ FY+FFE+ LIPM++I+G Sbjct: 93 LFPLCILSSFNYIKFNFKFFYINFLFMESILILVFSCLDIIFFYVFFESVLIPMYLILGF 152 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 +G ER IYA+Y FF+YTF GS+ ML AI+ + + T++ + L + PF IQ +WI Sbjct: 153 FGSRERKIYASYMFFVYTFVGSVLMLLAILFIFYYTGTTNYLVLLTCNFDPF-IQKILWI 211 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF SFA+K+PM PF+ WLP AHV+APT GSV LAGI+LK+G YG IRF +PLFP A+ Y Sbjct: 212 AFFLSFAVKVPMLPFYIWLPEAHVEAPTPGSVILAGILLKLGTYGFIRFSIPLFPFANFY 271 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 + P ++ LS++ +IY+S+V++ QTD+K++IAY+SIAHM + IG+++ G+EG++ QM Sbjct: 272 YTPFVYTLSILGLIYSSMVAIRQTDLKRIIAYASIAHMNLIMIGLYTNKIYGLEGSLLQM 331 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 SHGLVS ALF VG++Y+R HTR I Y GLV MP + V+ M+FT+AN+ LP TS FI Sbjct: 332 FSHGLVSGALFLIVGILYERYHTRLIKYYSGLVQTMPLFTVIFMLFTLANIALPTTSSFI 391 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+ + +F + T+AV A ++ ++YSLWL+ +V +G + + +DL+ RE C Sbjct: 392 GEFLIFLGIFNTNTTIAVFAIISMLFGSIYSLWLFNRVCYGNIQINFISFYQDLNKRELC 451 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M I ++ G+YP + D ++ +S ++ Sbjct: 452 MFCIILLVVFLIGLYPTFLLDYLNMSVSFLLN 483 >gi|15150746|ref|NP_150412.1| NADH dehydrogenase subunit 4 [Pylaiella littoralis] gi|15147752|emb|CAC50853.1| NADH dehydrogenase subunit 4 [Pylaiella littoralis] Length = 482 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/437 (48%), Positives = 299/437 (68%), Gaps = 11/437 (2%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 ALG++++ F+ SLF+W FD S FQ + + W+ + + LGVDGIS+ V+LTT + Sbjct: 32 ALGVTSLVFVCSLFLWLGFDHSTSKFQYVVDWLWVPFANINLVLGVDGISLFFVILTTLI 91 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P C+L+SW + + + Y+I+FL +E +++ F +LD+L FY+FFEA LIPMF++IG++ Sbjct: 92 FPLCLLASWSFDKGDVKTYLISFLSMELVLLLVFTNLDLLFFYVFFEAVLIPMFLVIGIY 151 Query: 156 GGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMW 212 G +R I AAY FFLYT FGS+FML ++ + ++ + A+S FS Q W+W Sbjct: 152 GSRQRKIRAAYMFFLYTLFGSLFMLIGVIYIYLFAGST---NYEALSTVSFSSYDQKWLW 208 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 +AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LFP AS Sbjct: 209 LAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFPEASL 268 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 YF P +F LSL+ ++Y L ++ QTD+K+L AY+S+AHM V IG+F+G GVE ++ Q Sbjct: 269 YFTPFVFSLSLLGVVYTLLTAIRQTDLKRLTAYTSVAHMNLVMIGLFTGTVIGVEASILQ 328 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 LSHG VSSALF +GV+YDR H+R I YGGL H MP + ++ + FTMAN+GLPGTS F Sbjct: 329 SLSHGFVSSALFLIIGVLYDRFHSRVIKYYGGLTHTMPLFIIIFLFFTMANLGLPGTSSF 388 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 +GEFL++ S F+ + T+ + A+ ++L YSLWL+ ++ +G K + DLS RE Sbjct: 389 VGEFLLLASAFEANTTLCLFAATSMILGGGYSLWLFNRIAYGNIKIVGL----DLSFREF 444 Query: 453 CMVYPIAVLTVFFGIYP 469 + P+ T+F GIYP Sbjct: 445 IIFLPLVSGTLFMGIYP 461 >gi|299830472|ref|YP_003734843.1| NADH dehydrogenase subunit 4 [Pythium ultimum] gi|269810849|gb|ACZ43878.1| NADH dehydrogenase subunit 4 [Pythium ultimum] gi|269812162|gb|ACZ44460.1| NADH dehydrogenase subunit 4 [Pythium ultimum] Length = 491 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/403 (49%), Positives = 285/403 (70%), Gaps = 3/403 (0%) Query: 51 VWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE 109 +W +FDK S+FQ + WI F +++LG+DGIS+ ++LTTFL P C+L S++ I + Sbjct: 48 LWILFDKSTSNFQYLFKIDWISQFNINFYLGIDGISLFFIILTTFLIPICMLISYEIINK 107 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFF 168 N +EY I + +LE +I +F LD+L+FYIFFE+ LIPMF+IIG+WG ER I A+Y FF Sbjct: 108 NVKEYFILYFILEFCLIISFSVLDLLIFYIFFESVLIPMFLIIGIWGSRERKIKASYLFF 167 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 +YT GS+FM AI+ + T+ LY S F FS + W+AFF SFA+K+PM PF Sbjct: 168 MYTLAGSLFMFVAIIHLFLTVGTTDYQILY-YSNFDFSYEKLYWLAFFLSFAVKVPMLPF 226 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+APTAGSV LAGI+LK+G YG +RFL+PLFP A+ YF P + L LI++IY Sbjct: 227 HVWLPEAHVEAPTAGSVILAGILLKLGSYGMVRFLIPLFPKATVYFTPYVLVLCLISVIY 286 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 ASL ++ QTD+K++IAY+S+AHM ++ +GIFS G+EG++ QM+SHGL+SS LFF +G Sbjct: 287 ASLTAIRQTDLKRIIAYASVAHMNFIVLGIFSLTIQGLEGSIIQMISHGLISSGLFFSIG 346 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 +YDR HTR I YGGL H MP + + + ++ +ANM +PG+S F+GE L++ VF+++ T Sbjct: 347 CLYDRYHTRFINYYGGLAHTMPLFCIALFIYVLANMSIPGSSSFVGELLILTGVFEDNTT 406 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 A+ A+ G+ L +YSL Y ++ +G + ++ DL+ RE Sbjct: 407 TAIFATIGMFLGGVYSLLFYNRICYGNIQNVYLKVYYDLTYRE 449 >gi|319738246|emb|CBJ18022.1| NADH dehydrogenase subunit 4 [Ectocarpus siliculosus] Length = 482 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 213/435 (48%), Positives = 298/435 (68%), Gaps = 7/435 (1%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 AL I+++ F+FSL +W FD+ FQ + + W+ + LG+DGIS+ V+LTT + Sbjct: 32 ALFITSVVFVFSLLLWLGFDQSTPKFQYVVNWLWLPVANINLVLGIDGISLFFVILTTLI 91 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P C+L+SW + + + Y+I+FL +E +++ F +LD+L FYIFFEA LIPMF++IG++ Sbjct: 92 FPLCLLASWSFDKGDIKTYLISFLSMELVLLLVFTNLDLLFFYIFFEAVLIPMFLVIGIY 151 Query: 156 GGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 G +R I AAY FFLYT FGS+FML ++ + +++ L +S F Q W+W+A Sbjct: 152 GSRQRKIRAAYMFFLYTLFGSLFMLIGVIYIYLFAGSTNYESLATVS-FSNYDQKWLWLA 210 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LFP AS YF Sbjct: 211 FFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFPEASVYF 270 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P +F LSL+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G GVE A+ Q L Sbjct: 271 TPFVFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGVEAAILQSL 330 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHG VSSALF +GV+YDR H+R + YGGL H MP + ++ + FTMAN+GLPGTS FIG Sbjct: 331 SHGFVSSALFLIIGVLYDRWHSRVVKYYGGLTHTMPIFIIIFLFFTMANLGLPGTSSFIG 390 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFL+++S F+ + T A+ ++L YSLWL+ ++ +G K DLSLRE + Sbjct: 391 EFLLLVSAFEANTTACFFAATSMILGGGYSLWLFNRIAYGNVKLVGF----DLSLREFIL 446 Query: 455 VYPIAVLTVFFGIYP 469 P+ + T+F GIYP Sbjct: 447 FLPLVIGTLFMGIYP 461 >gi|268053557|ref|YP_003288916.1| NADH dehydrogenase subunit 4 [Saccharina japonica] gi|268053596|ref|YP_003288954.1| NADH dehydrogenase subunit 4 [Saccharina religiosa] gi|268053635|ref|YP_003288992.1| NADH dehydrogenase subunit 4 [Saccharina ochotensis] gi|268053674|ref|YP_003289069.1| NADH dehydrogenase subunit 4 [Saccharina diabolica] gi|268053713|ref|YP_003289120.1| NADH dehydrogenase subunit 4 [Saccharina longipedalis] gi|262318177|dbj|BAI48502.1| NADH dehydrogenase subunit 4 [Saccharina japonica] gi|262318216|dbj|BAI48540.1| NADH dehydrogenase subunit 4 [Saccharina religiosa] gi|262318255|dbj|BAI48578.1| NADH dehydrogenase subunit 4 [Saccharina ochotensis] gi|262318294|dbj|BAI48616.1| NADH dehydrogenase subunit 4 [Saccharina diabolica] gi|262318333|dbj|BAI48654.1| NADH dehydrogenase subunit 4 [Saccharina longipedalis] Length = 482 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 217/435 (49%), Positives = 297/435 (68%), Gaps = 7/435 (1%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 ALGI++ F+ SLF+W FD FQ + W+ + LGVDGIS+ V+LTT + Sbjct: 32 ALGITSAVFVSSLFLWLGFDHSTPKFQFVVDSLWLPIANINLILGVDGISLFFVILTTLI 91 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P C+L+SW + + Y+I+FL +E +++ F +LD+L FYIFFEA LIPMF++IG++ Sbjct: 92 FPLCLLASWSFDKGEVKTYLISFLSMELVLLLVFTNLDLLFFYIFFEAVLIPMFLVIGIY 151 Query: 156 GGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 G ER I AAY FFLYT GS+FML IV + + S+ ++ ++ F Q W+W+A Sbjct: 152 GSRERKIRAAYMFFLYTLLGSLFMLIGIVYI-YLFAGSTNYEVLSVINFSTYDQKWLWLA 210 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LFPLAS YF Sbjct: 211 FFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFPLASVYF 270 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P IF LSL+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G GVE A+ Q L Sbjct: 271 TPFIFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGVEAAILQSL 330 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHG VSSALF +GV+YDR H+R + YGGL H MP + ++ + FTMAN+GLPGTS FIG Sbjct: 331 SHGFVSSALFLIIGVLYDRWHSRVVKYYGGLTHTMPIFIIIFLFFTMANLGLPGTSSFIG 390 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFL+++S F+ ++T A+ ++L YSLWL+ ++ +G K + DLS RE + Sbjct: 391 EFLLLVSAFEANSTACFFAATSMILGGGYSLWLFNRIAYGNIKMVGL----DLSFREFMI 446 Query: 455 VYPIAVLTVFFGIYP 469 P+ + T+F GIYP Sbjct: 447 FLPLVIGTLFMGIYP 461 >gi|94265861|ref|ZP_01289591.1| Proton-translocating NADH-quinone oxidoreductase, chain M [delta proteobacterium MLMS-1] gi|93453597|gb|EAT03993.1| Proton-translocating NADH-quinone oxidoreductase, chain M [delta proteobacterium MLMS-1] Length = 507 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 210/492 (42%), Positives = 322/492 (65%), Gaps = 8/492 (1%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+LS + FLP LG V+L G + AL ++ I S+ ++ +FD+ +Q Sbjct: 11 PYLSALVFLPLLGALVMLALP----GDNACRNWALIVTVITACVSMPLFFLFDRSTHLYQ 66 Query: 64 MIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E++ WI+ + +Y LG+DGIS+LLV++TT + P C+L SW+ IQ+ +E+MI L++E Sbjct: 67 FGEHHTWIEAWNINYTLGIDGISLLLVLMTTLIMPLCVLGSWRYIQKRVKEFMICLLLME 126 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + ++G F++LD +LFYIF+EA LIPM+++I VWGG R+YA+ KFFLYT GS+ +L AI Sbjct: 127 TAMLGVFMALDFVLFYIFWEAMLIPMYLLIAVWGGPRRMYASIKFFLYTLAGSVMLLVAI 186 Query: 183 VVM--CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + E +T SI L S + + Q W+++AFF +FAIK+PMFPFHTWLP AHV+AP Sbjct: 187 IALFLTSEPQTFSIPLLMEQS-YSTTFQIWVFLAFFLAFAIKVPMFPFHTWLPAAHVEAP 245 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TAGSV LA ++LKMG YG +RF LP+ P A+ F P I +LS+I I+Y ++ Q D+K Sbjct: 246 TAGSVILASVLLKMGTYGFLRFCLPITPEATHIFMPYILWLSIIGILYGGFTALAQQDMK 305 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KLIAYSS+ HMG+VT+GIF G++GA+ QM++HG+ + ALFFCVG++Y+R H+R++ Sbjct: 306 KLIAYSSVGHMGFVTLGIFVLNSQGIQGAILQMINHGITTGALFFCVGMLYERTHSRELA 365 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 G+ MP Y + + F ++++ PGT+ FIGEF+++ F S +A A G VL+ Sbjct: 366 LNAGVGRFMPIYVLFLGFFALSSLAFPGTNSFIGEFMILAGSFSYSIIIAAFAIPGAVLA 425 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y L ++VV+G + + + L DL+LRE ++ P+ + + G+ P P + V + Sbjct: 426 AAYMFRLLQRVVWGGTDNPEHRGLLDLNLREVVVLAPLLLFVFWIGLSPAPFLEVMEVSV 485 Query: 481 SSIIENYTLKTG 492 + ++ G Sbjct: 486 AHLLTQVGATEG 497 >gi|268164101|ref|YP_003288878.1| NADH dehydrogenase subunit 4 [Saccharina coriacea] gi|262318411|dbj|BAI48730.1| NADH dehydrogenase subunit 4 [Saccharina coriacea] Length = 482 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 217/435 (49%), Positives = 297/435 (68%), Gaps = 7/435 (1%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 ALGI++ F+ SLF+W FD FQ + W+ + LGVDGIS+ V+LTT + Sbjct: 32 ALGITSAVFVSSLFLWLGFDHSTPKFQFVVDSLWLPIANINLILGVDGISLFFVILTTLI 91 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P C+L+SW + + Y+I+FL +E +++ F +LD+L FYIFFEA LIPMF++IG++ Sbjct: 92 FPLCLLASWSFDKGEVKTYLISFLGMELVLLLVFTNLDLLFFYIFFEAVLIPMFLVIGIY 151 Query: 156 GGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 G ER I AAY FFLYT GS+FML IV + +++ L ++ P+ Q W+W+A Sbjct: 152 GSRERKIRAAYMFFLYTLLGSLFMLIGIVYIYLFAGSTNYEILSVINFSPYD-QKWLWLA 210 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LFPLAS YF Sbjct: 211 FFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFPLASVYF 270 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P IF LSL+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G GVE A+ Q L Sbjct: 271 TPFIFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGVEAAILQSL 330 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHG VSSALF +GV+YDR H+R + YGGL H MP + ++ + FTMAN+GLPGTS FIG Sbjct: 331 SHGFVSSALFLIIGVLYDRWHSRVVKYYGGLTHTMPIFIIIFLFFTMANLGLPGTSSFIG 390 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFL+++S F+ ++T A+ ++L YSLWL+ ++ +G K + DLS RE + Sbjct: 391 EFLLLVSAFEANSTACFFAATSMILGGGYSLWLFNRIAYGNIKMVGL----DLSFREFMI 446 Query: 455 VYPIAVLTVFFGIYP 469 P+ + T+F GIYP Sbjct: 447 FLPLVLGTLFMGIYP 461 >gi|84508579|ref|YP_448627.1| NADH dehydrogenase subunit 4 [Fucus vesiculosus] gi|39653302|gb|AAR29321.1| NADH dehydrogenase subunit 4 [Fucus vesiculosus] Length = 482 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 216/448 (48%), Positives = 300/448 (66%), Gaps = 11/448 (2%) Query: 41 STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFC 99 +T+ FI SLF+W FD+ FQ I W+ + LGVDGIS+ V+LTT + P C Sbjct: 36 TTLVFILSLFLWLGFDQSTPKFQFITDSLWLPLANINLILGVDGISLFFVLLTTLIFPLC 95 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 +L+SW + + + Y+I+FL +E +++ F SLD+L FYIFFEA LIPMF++IG++G + Sbjct: 96 LLASWTFNKGDLKTYLISFLSMELVLLLVFTSLDLLFFYIFFEAVLIPMFLVIGIYGSRQ 155 Query: 160 R-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS 218 R I AAY FFLYT GS+FML +V + ++S + ++ KF Q W+W+AFF S Sbjct: 156 RKIRAAYMFFLYTLLGSLFMLVGVVYIYLSVGSTSY-EALSVIKFSSYNQKWLWLAFFAS 214 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 FA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LFP AS YF P I Sbjct: 215 FAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFPEASIYFTPFI 274 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 F LS++ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G G+E A+ Q LSHG Sbjct: 275 FSLSVLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGIEAAILQSLSHGF 334 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 VSSALF +GV+YDR HTR + YGGL H MP + ++ + FTMAN+GLPGTS F+GEFL+ Sbjct: 335 VSSALFLIIGVLYDRWHTRGVKYYGGLTHTMPIFIIIFLFFTMANLGLPGTSSFVGEFLL 394 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 +S F+ + T A+ ++L +YSLWL+ ++ +G K DLS RE + +P+ Sbjct: 395 FVSAFEANTTSCFFAATSMILGGVYSLWLFNRIAYGNIKLIG----SDLSYREFVVFFPL 450 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + T+ GIYP D F P+ + + N Sbjct: 451 VLGTLVMGIYP----DIFFCPMHASVSN 474 >gi|182412577|ref|YP_001817643.1| proton-translocating NADH-quinone oxidoreductase, chain M [Opitutus terrae PB90-1] gi|177839791|gb|ACB74043.1| proton-translocating NADH-quinone oxidoreductase, chain M [Opitutus terrae PB90-1] Length = 501 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 217/473 (45%), Positives = 306/473 (64%), Gaps = 14/473 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGRSS 61 PFLS++ F P V V+ F R F ALG+ FSL + F+ + Sbjct: 11 PFLSVLIFSPVAAVAVLAFLRNENLQRWWTFAFTTALGL------FSLALLPRFNTDTHA 64 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ +E+ W+ +Y LGVDGISILLV LTT +TP C+L+SW I+ +E+MIA L+ Sbjct: 65 FQFVEHAAWVPALKINYTLGVDGISILLVWLTTLITPLCVLASWNYIKTRVKEFMIALLL 124 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +E+ ++G F +LD +LF+ F+E+ LIPM ++IGVWGG RIYA+ KFF+YT GS+F+L Sbjct: 125 METTMVGVFSALDGVLFFAFWESMLIPMALMIGVWGGPRRIYASLKFFVYTMAGSVFLLV 184 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A++ M + T SI D PFS Q W++ AFF SFAIK+PMFPFHTWLP AHV+ Sbjct: 185 ALIAMRLQTGTFSIPDTMG---HPFSDGFQAWVFAAFFISFAIKVPMFPFHTWLPAAHVE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LA ++LKMG YG +RF LP+ P A FAP + +LS+ AI+Y ++ QTD Sbjct: 242 APTAGSVLLASVLLKMGAYGFLRFALPITPHAVHTFAPYVMWLSVAAILYGGFAALAQTD 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSS+AHMG+ T+GIF+ +GVEGA +++HG+ + LF VG+IY+RLHTRD Sbjct: 302 LKKLVAYSSVAHMGFATLGIFALNAAGVEGATLVLINHGVTTGGLFMVVGLIYERLHTRD 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + A G+ +MP +A +F ++++ PGT+ F+GEFLV+ F S + V A G+V Sbjct: 362 LAAASGIGKHMPVFAFCYGLFCLSSLAFPGTNSFVGEFLVMAGGFSVSKLLVVCAVPGIV 421 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A Y+L + +K+ +G K L DL++RE M P+ V + G+ P P Sbjct: 422 AAAAYNLRMLQKLAWGGVNNPKHPALADLNVREIAMFAPLVVFVFWIGLQPAP 474 >gi|239811627|gb|ACS27114.1| NADH dehydrogenase subunit 4 [Heterosigma akashiwo] gi|239811667|gb|ACS27153.1| NADH dehydrogenase subunit 4 [Heterosigma akashiwo] gi|288871924|dbj|BAI70610.1| NADH dehydrogenase subunit 4 [Heterosigma akashiwo] Length = 491 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 222/454 (48%), Positives = 311/454 (68%), Gaps = 9/454 (1%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW---IDYFCSYHLGVDGISILLVVLTT 93 AL +S F SLF+W FD+ + FQ + + W ++ C++ GVDGIS+ LV+LTT Sbjct: 37 ALNLSFFVFFCSLFLWIWFDQSTAKFQFVTSFPWFSSLNINCTF--GVDGISLFLVLLTT 94 Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 L P C+L SW SIQ+ +EY++ FL++E+ +I F +D+LLFYIFFE LIPMFV+IG Sbjct: 95 LLFPLCLLGSWHSIQKRIKEYVVCFLIMEAFLICVFCVMDLLLFYIFFEGVLIPMFVLIG 154 Query: 154 VWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMW 212 +WG ER I AAY FFLYT FGS+FML AI+ + + K ++ ++ A + F Q +W Sbjct: 155 IWGSRERKIRAAYLFFLYTLFGSLFMLLAILYI-FVKTGTTDYEILAHTTFSSFEQKILW 213 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 +AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF LPLFP AS Sbjct: 214 LAFFASFATKVPMLPMHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSLPLFPEASY 273 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 YF P+++ ++ + +IY S ++ QTD+K++IAY+S+AHM V +G+FS G+EGA+ Q Sbjct: 274 YFTPLVYTMATLGVIYTSFTAIRQTDLKRIIAYASVAHMNLVMMGLFSFNLPGLEGALLQ 333 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 LSHG VSSALF C+GV+YDR HTR + Y GLVH MP V+++ FTMAN+GLPGTS F Sbjct: 334 SLSHGFVSSALFLCIGVLYDRYHTRMVKYYSGLVHVMPISMVILLFFTMANIGLPGTSSF 393 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLR 450 +GEFL+++ ++Q + TV L + G++L YSLWLY ++ +G K + + K D+S Sbjct: 394 VGEFLILVGIYQTNTTVTFLGATGMILGGGYSLWLYNRIAYGNLKTQYLGMTKFSDISKN 453 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 E V P+ + T+ GIYP D V ++ ++ Sbjct: 454 EFFAVLPLIMGTLVMGIYPEVFLDPMHVSVNHLL 487 >gi|89280740|ref|YP_514653.1| NADH dehydrogenase subunit 4 [Oryza sativa Indica Group] gi|194033233|ref|YP_002000570.1| NADH dehydrogenase subunit 4 [Oryza sativa Japonica Group] gi|23495394|dbj|BAC19875.1| NADH dehydrogenase subunit 4 [Oryza sativa Japonica Group] gi|74100107|gb|AAZ99271.1| NADH dehydrogenase subunit 4 [Oryza sativa Indica Group] gi|74100162|gb|AAZ99325.1| NADH dehydrogenase subunit 4 [Oryza sativa Japonica Group] gi|74100216|gb|AAZ99378.1| NADH dehydrogenase subunit 4 [Oryza sativa Japonica Group] gi|285026179|dbj|BAI68011.1| NADH dehydrogenase subunit 4 [Oryza sativa Indica Group] Length = 495 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 216/453 (47%), Positives = 300/453 (66%), Gaps = 3/453 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTF 94 + L +S I F++ L FD + Q +E W+ Y + ++G+DG+S+ V+LTTF Sbjct: 40 IGLCVSLITFLYPLVPRIQFDPSTAKSQFVESLRWLPYENIHLYMGIDGLSLFFVILTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CI W ++ +EY+ AFL+ E ++I LD LLFY+ E+ IPMF+IIGV Sbjct: 100 LIPICISVGWSGMRSFGKEYITAFLIREFLMIAVSCMLDPLLFYVLSESVPIPMFIIIGV 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+FFLYT GS+FML AI+++ + T+ + + ++F Q +WI Sbjct: 160 WGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDL-QILLTTEFSERRQILLWI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF SFA+K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +P+FP A+ Sbjct: 219 AFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLC 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P I+ LS IAIIY SL ++ Q D+KK+IAYSS+AHM VTIG+FS G+ G++ M Sbjct: 279 FTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILLM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLVSSALF CVGV+YDR TR + YGGLV MP ++ + FT+ANM LPGTS FI Sbjct: 339 LSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFSTIFFFFTLANMSLPGTSSFI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+++ FQ ++ VA LA+ G++L A YSLWLY +VV G K + + + DL+ RE Sbjct: 399 GEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLYKFSDLNGREVS 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V V G++P D +S+++++ Sbjct: 459 IFLPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491 >gi|13449336|ref|NP_085518.1| NADH dehydrogenase subunit 4 [Arabidopsis thaliana] gi|6851022|emb|CAA69742.3| NADH dehydrogenase subunit 4 [Arabidopsis thaliana] Length = 495 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 223/484 (46%), Positives = 308/484 (63%), Gaps = 7/484 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGR-RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS + P LG +LF + R R + L S I F++S FD + Q Sbjct: 12 LSGLILCPVLGSITLLF---IPNSRIRPIRLIGLCASLITFLYSPVPRIQFDSSTAKSQF 68 Query: 65 IEYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E W+ Y +++LG+DGIS+ V+LTTFL P CI W ++ +EY+ AFL+ E Sbjct: 69 VESLRWLPYENINFYLGIDGISLFFVILTTFLIPICISVGWSGMRSYGKEYITAFLIREF 128 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAI 182 ++I F LD+LLFY+F E+ IPMF+IIGVWG +R I AAY+FFLYT GS+FML AI Sbjct: 129 LMIAVFRMLDLLLFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAI 188 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 +++ ++ T+ + + ++F Q ++WIA F SFA+K+PM P H WLP AHV+APTA Sbjct: 189 LLILFQTGTTDL-QISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTA 247 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LAGI LK G +G +RF +P+FP A+ P I+ LS IAIIY SL + Q D+KK+ Sbjct: 248 GSVILAGIPLKFGTHGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSLTTSRQIDLKKI 307 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHM VTIG+FS G+ G++ MLSHGLV SALF CVGV+YDR TR + Y Sbjct: 308 IAYSSVAHMNLVTIGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYY 367 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGLV MP + + FT+ANM PGTS FIGEFL+++ FQ ++ VA LA+ G++L A Sbjct: 368 GGLVSTMPNLSTIFFSFTLANMSSPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAA 427 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 YSLWLY +VV G K + + + D + RE + P V V G++P D +S+ Sbjct: 428 YSLWLYNRVVSGNLKPDFLHKFSDSNGREVSIFIPFLVGLVRMGVHPKVFPDCMHTSVSN 487 Query: 483 IIEN 486 ++++ Sbjct: 488 LVQH 491 >gi|253807630|gb|ACT36208.1| NADH dehydrogenase subunit 4 [Helicosporidium sp. ex Simulium jonesi] Length = 490 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 231/478 (48%), Positives = 322/478 (67%), Gaps = 12/478 (2%) Query: 6 LSIVTFLPFLGVFVIL-FSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 L + P LG+F+IL + G ++ +AL + + F+ SLF+W FD + FQ+ Sbjct: 4 LELTLLFPILGIFLILTMPDWQGTKIKT---IALITTLLTFLTSLFLWLEFDSSTAFFQL 60 Query: 65 IEYYHWI--DYFC----SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Y+ + +YF + LG+DGIS+ ++LTT LTP CIL SW +IQ +EY IAF Sbjct: 61 TSDYNSLLENYFSFSTLNLSLGIDGISLFFIILTTLLTPICILVSWDNIQNYVKEYCIAF 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIF 177 LVLE ++ F D+LLFYIFFE+ LIPMF+IIGVWG ER I AAY+FFLYT FGS+ Sbjct: 121 LVLEVFMLAVFSVTDLLLFYIFFESVLIPMFIIIGVWGSRERKIRAAYQFFLYTLFGSVL 180 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML A++++ ++ + + LYA +++ S Q +W+AFF SFA+K+PM P H WLP AHV Sbjct: 181 MLLALLLIYFQTGSLDLEILYA-TEWSESRQILLWLAFFASFAVKVPMVPVHIWLPEAHV 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAGI+LK+G YG +RF LP+FP AS YF P+I+ +S+IAIIY S ++ Q Sbjct: 240 EAPTAGSVILAGILLKLGTYGFLRFSLPMFPYASLYFTPLIYTMSIIAIIYTSCTTLRQI 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KK+IAYSS+AHM +VT+GIFS G+EG++ M+SHGL+S ALF CVGV+YDR TR Sbjct: 300 DLKKIIAYSSVAHMNFVTLGIFSQNIQGIEGSILLMISHGLISPALFLCVGVLYDRYKTR 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 + Y G MP +A+ + FTM+N+ LPGTS F GEFL++ V+ N+ +LA+ G+ Sbjct: 360 ILRYYSGCGRTMPIFALFFVFFTMSNISLPGTSSFPGEFLILTGVYLNNTIATILAATGM 419 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 VL A Y+LWL ++++GV K E + DL+ RE M P+ + ++ GI P DT Sbjct: 420 VLGAGYALWLCNRLIYGVFKPEFIYLYSDLNRREFMMFIPLIIPILWIGINPEAFIDT 477 >gi|268164062|ref|YP_003288827.1| NADH dehydrogenase subunit 4 [Saccharina angustata] gi|262318372|dbj|BAI48692.1| NADH dehydrogenase subunit 4 [Saccharina angustata] Length = 482 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 217/435 (49%), Positives = 297/435 (68%), Gaps = 7/435 (1%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 ALGI++ F+ SLF+W FD FQ + W+ + LGVDGIS+ V+LTT + Sbjct: 32 ALGITSAVFVSSLFLWLGFDHSTPKFQFVVDSLWLPIANINLILGVDGISLFFVILTTLI 91 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P C+L+SW + + Y+I+FL +E +++ F +LD+L FYIFFEA LIPMF++IG++ Sbjct: 92 FPLCLLASWSFDKGEVKTYLISFLGMELVLLLVFTNLDLLFFYIFFEAVLIPMFLVIGIY 151 Query: 156 GGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 G ER I AAY FFLYT GS+FML IV + + S+ ++ ++ F Q W+W+A Sbjct: 152 GSRERKIRAAYMFFLYTLLGSLFMLIGIVYI-YLFAGSTNYEVLSVINFSSYDQKWLWLA 210 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LFPLAS YF Sbjct: 211 FFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFPLASVYF 270 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P IF LSL+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G GVE A+ Q L Sbjct: 271 TPFIFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGVEAAILQSL 330 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHG VSSALF +GV+YDR H+R + YGGL H MP + ++ + FTMAN+GLPGTS FIG Sbjct: 331 SHGFVSSALFLIIGVLYDRWHSRVVKYYGGLTHTMPIFIIIFLFFTMANLGLPGTSSFIG 390 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFL+++S F+ ++T A+ ++L YSLWL+ ++ +G K + DLS RE + Sbjct: 391 EFLLLVSAFEANSTACFFAATSMILGGGYSLWLFNRIAYGNIKMVGL----DLSFREFMI 446 Query: 455 VYPIAVLTVFFGIYP 469 P+ + T+F GIYP Sbjct: 447 FLPLVLGTLFMGIYP 461 >gi|253996961|ref|YP_003049025.1| proton-translocating NADH-quinone oxidoreductase subunit M [Methylotenera mobilis JLW8] gi|253983640|gb|ACT48498.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylotenera mobilis JLW8] Length = 499 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 219/482 (45%), Positives = 329/482 (68%), Gaps = 3/482 (0%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS +LP L ++LF++ + + +AL S +F+ ++ +++ F+ FQ Sbjct: 10 LSFSIWLPVLAGVLVLFTANDSKPNLTRW-LALFGSVASFLVTIPLYTHFNFADGGFQFQ 68 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + WI F YHLG DGI+I L++LT+F T ++S+W+ I++ +YM +FL++ + Sbjct: 69 ERFLWIMSFNIHYHLGADGIAIPLILLTSFTTVIVVISAWEVIEKRVAQYMASFLIMSGL 128 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 +IG F +LD +L+Y+F+EA LIPMF++IG+WGG R+YA KFFLYT GS+ ML A + Sbjct: 129 MIGVFSTLDAILYYVFWEAMLIPMFLVIGIWGGPNRVYATVKFFLYTLLGSLLMLVAFIY 188 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 M + + +I D Y + P ++Q +++AFF +FA+KIPM+P HTWLP+AHV+APT GS Sbjct: 189 MFHQTGSFAISDYYQL-PLPLNVQVLIFLAFFAAFAVKIPMWPVHTWLPDAHVEAPTGGS 247 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 V LA I LK+GGY +RF +P+ P A+ Y + + LSLIAI+Y +LV++VQ D+KKLIA Sbjct: 248 VVLAAIALKLGGYSFLRFAMPIAPDAAHYLSGFMITLSLIAIVYIALVALVQKDMKKLIA 307 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSSI+HMG+VT+G F G+EGA+ QM+SHG +SSA+F CVGV+YDR+H+R I AYGG Sbjct: 308 YSSISHMGFVTLGFFIFNNLGLEGAVVQMISHGFISSAMFLCVGVLYDRVHSRQIDAYGG 367 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + + MP +A ++F MAN GLPGTSGF+GEF+VI+ Q + A LASF ++ A Y+ Sbjct: 368 VANTMPAFAAFAVLFAMANSGLPGTSGFVGEFMVILGAIQVNFWYAFLASFTLIFGAAYT 427 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 LW+ ++V +G VQ LKDL+ RE ++ +A+L + GIYP P+ D + ++ ++ Sbjct: 428 LWMVKRVFYGEVANANVQALKDLNKREFLILAILAILVLAVGIYPQPLTDMTNATVTQLL 487 Query: 485 EN 486 + Sbjct: 488 SH 489 >gi|74325174|ref|YP_316594.1| NADH dehydrogenase subunit 4 [Thalassiosira pseudonana] gi|74100240|gb|AAZ99401.1| NADH dehydrogenase subunit 4 [Thalassiosira pseudonana] Length = 498 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 210/474 (44%), Positives = 316/474 (66%), Gaps = 9/474 (1%) Query: 16 GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF- 74 G F++LF + +AL S ++ SLF+W F+K SFQ + WI + Sbjct: 23 GTFLLLFVP--SSNHSALKAIALNTSCFLYVISLFLWVFFNKSIGSFQFVSKLLWIPFLN 80 Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDM 134 ++ LG+DGIS+ ++LTT L CIL SW S++ N +E++IAFLV+E +IG F LD+ Sbjct: 81 LNFSLGIDGISLFFILLTTLLIFLCILISWNSVKTNIKEFLIAFLVMEFFLIGVFSILDL 140 Query: 135 LLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 LLFYI+FE+ LIPM++I+G+WG ER I AAY FFLYT GS+ ML +I+ + ++ T+ Sbjct: 141 LLFYIYFESVLIPMYLIVGIWGSRERKIRAAYFFFLYTLLGSVLMLLSILYIYYQVGTT- 199 Query: 194 IIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 D + F FS Q ++W++FF SFA K+PM P H WLP AHV+APTAGSV LAG++ Sbjct: 200 --DYEVLLTFIFSKTEQKFLWLSFFGSFATKVPMVPVHLWLPEAHVEAPTAGSVILAGVL 257 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+G YG +RF PLFP AS YFAP+++ LS++ I+Y S ++ QTD K++IAY+S+AHM Sbjct: 258 LKLGTYGFLRFSFPLFPEASFYFAPIVYLLSVVGIVYTSFTAIRQTDFKRIIAYTSVAHM 317 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +G+FS G+EGA+ Q LSHG V+SALF +GV+Y+R HTR + YGGLVH MP Sbjct: 318 NLVMVGLFSFNTIGLEGAILQSLSHGFVASALFLIIGVVYERHHTRMVKYYGGLVHVMPL 377 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 Y + + FTM+N+GLPGT F+GEFL+++ F+ + + +++ G+++ YSLWL+ ++ Sbjct: 378 YTFIFLFFTMSNIGLPGTGSFVGEFLILVGSFKTNTSATFISATGMIIGGCYSLWLFNRI 437 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 +G K + ++ D++ RE + P+ T+ G+YP ++ + ++ ++E Sbjct: 438 SYGNLKTQYLKDYIDINKREFFIFLPLIFGTIAIGLYPEIFLNSMHMSVNMLVE 491 >gi|222110098|ref|YP_002552362.1| proton-translocating NADH-quinone oxidoreductase subunit m [Acidovorax ebreus TPSY] gi|221729542|gb|ACM32362.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidovorax ebreus TPSY] Length = 491 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/435 (46%), Positives = 301/435 (69%), Gaps = 5/435 (1%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD G ++ Q +E WI+ F YHLGVDGI+ V LT F+T +++SW+SI E + Sbjct: 52 FDNGSAAAQFVEKSMWIERFNVYYHLGVDGIAFWFVPLTAFITVIVVIASWESITERVNQ 111 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 YM AFL+L +++G F ++D +LFY+FFEA+LIPM++IIG+WGG +IYAA+KFFLYT Sbjct: 112 YMGAFLILSGLMVGVFSAMDGMLFYVFFEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLL 171 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTW 231 GS+ L A + + ++ D+ K P S Q ++ AFF +FA+K+PM+P HTW Sbjct: 172 GSLLTLIAFIYLY--NQSGGSFDIATWHKLPLSATAQTLLFFAFFAAFAVKVPMWPVHTW 229 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+ HV+APT GS LA IMLK+G YG +RF LP+ P AS+ +A ++ LSL+A+IY L Sbjct: 230 LPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSLPIAPDASREWAWLMITLSLVAVIYVGL 289 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V+MVQ D+KKL+AYSS+AHMG+VT+G F GV G + QM++HG VS A+F C+GV+Y Sbjct: 290 VAMVQKDMKKLVAYSSVAHMGFVTLGFFVFNDMGVSGGLVQMIAHGFVSGAMFLCIGVLY 349 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+H+R+I +YGG+V+ MP++A ++FTMAN GLP T+GF+GE++VI++ + V + Sbjct: 350 DRVHSREIASYGGVVNTMPKFAAFALLFTMANCGLPATAGFVGEWMVIIAAVKFDFWVGL 409 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 A+ ++L A YSLW+Y++V G + V+ L D+ RE ++ +A+ ++ G+YP P Sbjct: 410 GAALALILGASYSLWMYKRVYLGPVTNDNVRGLTDIGGREFLVLGLLAIAVLYMGVYPKP 469 Query: 472 IRDTFSVPLSSIIEN 486 D V ++ ++++ Sbjct: 470 FTDVMDVSVAELLKH 484 >gi|300122798|emb|CBK23813.2| unnamed protein product [Blastocystis hominis] Length = 487 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 207/447 (46%), Positives = 309/447 (69%), Gaps = 3/447 (0%) Query: 41 STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFC 99 ++I F SL + +FDK FQ + +W+ +F ++ +G+DGIS+ ++LTTFL P C Sbjct: 38 TSITFFISLGLLFLFDKSTIFFQGLYEINWLSFFNLNFIIGIDGISLFFILLTTFLFPIC 97 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 ILSS+ I+ NF+ + I FL++ES+++ F LD++ FY+FFE+ LIPM++I+G++G E Sbjct: 98 ILSSYNYIKFNFKFFYINFLIMESILLLVFSCLDIVFFYVFFESVLIPMYLILGLFGSRE 157 Query: 160 R-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS 218 R I A+Y FF+YTF GS+ ML AI+ + + TS+ I L + PF IQ +WIAFF S Sbjct: 158 RKILASYMFFIYTFVGSVLMLLAILFIYYYAGTSNYIVLLTYNFEPF-IQKILWIAFFVS 216 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 FA+K+PM PF+ WLP AHV+APT GSV LAGI+LK+G YG +RF LPLF A+ Y+ P + Sbjct: 217 FAVKVPMVPFYIWLPEAHVEAPTPGSVILAGILLKLGTYGFLRFSLPLFTFANFYYTPFV 276 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 + L+++ +IY+SLV++ QTD+K+++AY+SIAHM + IG+++ G+EG++ QM SHGL Sbjct: 277 YTLAVVGLIYSSLVAVRQTDLKRIVAYASIAHMNLIMIGLYTNKIYGLEGSLLQMFSHGL 336 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 VS ALF VG++Y+R HTR I Y GLV MP +AV+ ++FT+AN+ LP TS F+GEFL+ Sbjct: 337 VSGALFLAVGILYERYHTRLIKYYSGLVQTMPIFAVIFLMFTLANIALPTTSSFVGEFLI 396 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 + +F + T+AV A ++ ++YSLWLY +V +G + + +DL+ RE M I Sbjct: 397 FLGIFNTNTTIAVFAILSMMFGSIYSLWLYNRVCYGNIQVNFIGLYQDLNKREFVMFLLI 456 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSIIE 485 VL GIYP I D ++ +S ++ Sbjct: 457 LVLVFIIGIYPTFILDYLNMSVSFLLN 483 >gi|200004056|ref|YP_002221390.1| NADH dehydrogenase subunit 4 [Blastocystis sp. NandII] gi|198385478|gb|ACH86071.1| NADH dehydrogenase subunit 4 [Blastocystis sp. NandII] Length = 487 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 208/447 (46%), Positives = 308/447 (68%), Gaps = 3/447 (0%) Query: 41 STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFC 99 ++I F S+F+ FDK FQ + W+ +F ++ +G+DGIS+ ++LTTFL P C Sbjct: 38 TSITFFISVFLLFGFDKSTIYFQGLHEISWLSFFNINFIIGIDGISLFFILLTTFLFPIC 97 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 ILSS+ I+ NF+ + I FL++ES+++ F LD++ FY+FFE+ LIPM++I+G +G E Sbjct: 98 ILSSFNYIKFNFKFFYINFLIMESILLLVFSCLDIVFFYVFFESVLIPMYLILGFFGSRE 157 Query: 160 R-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS 218 R I A+Y FF+YTF GS+ ML AI+ + + TS+ I L + PF +Q +WIAFF S Sbjct: 158 RKILASYMFFIYTFVGSVLMLLAILFIYFYVGTSNYIVLLTCNFDPF-LQKILWIAFFVS 216 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 FA+K+PM PF+ WLP AHV+APT GSV LAGI+LK+G YG +RF LPLF A+ Y+ P I Sbjct: 217 FAVKVPMIPFYIWLPEAHVEAPTPGSVILAGILLKLGTYGFLRFSLPLFTFANFYYTPFI 276 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 + LS++ +IY+SLV++ QTD+K+++AY+SIAHM + IG+++ G+EG++ QM SHGL Sbjct: 277 YTLSILGLIYSSLVAIRQTDLKRIVAYASIAHMNLIMIGLYTNKIYGIEGSLLQMFSHGL 336 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 VS ALF VGV+Y+R HTR I Y GLV MP +AV+ ++FT+AN+ LP TS F+GEFL+ Sbjct: 337 VSGALFLIVGVLYERYHTRLIKYYSGLVQTMPLFAVIFLLFTLANIALPTTSSFVGEFLI 396 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 + +F ++T+AV A ++ ++YSLWLY +V +G + + +DL+ RE M I Sbjct: 397 FLGIFNTNSTIAVFAILSMMFGSIYSLWLYNRVCYGNIQINFISLYQDLNKREFVMFCLI 456 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSIIE 485 VL GIYP + D ++ +S ++ Sbjct: 457 LVLVFLIGIYPTFLLDYLNMSVSFLLN 483 >gi|300311107|ref|YP_003775199.1| transmembrane NADH dehydrogenase I subunit M [Herbaspirillum seropedicae SmR1] gi|300073892|gb|ADJ63291.1| transmembrane NADH dehydrogenase I (chain M) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 496 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 219/488 (44%), Positives = 319/488 (65%), Gaps = 10/488 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI----STINFIFSLFVWSVFDKGR 59 P LS+ ++P VF IL L GR S G+A + S + + + + FD Sbjct: 7 PILSLAIWVPI--VFGILV---LALGRDSNPGLARWLALFGSLVGLVVTFPLIQHFDPLA 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 +Q +E WID F SY LG+DGIS+ V LT F+T +L+ W IQ+ +YM AF Sbjct: 62 HGYQFVEKTPWIDRFNISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGAF 121 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L +++G F +LD +LFY FFEA+LIPMF+I+GVWGG R+YAA+K FLYT GS+ M Sbjct: 122 LILSGIMVGVFSALDAMLFYAFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLLGSLLM 181 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A++ + + S I + Q ++ AF +FA+K+PM+P HTWLP+AHVQ Sbjct: 182 LIALIYLYYVSGGSFEIPTWHQVPLSMLEQKILFFAFLAAFAVKVPMWPVHTWLPDAHVQ 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GS+ LA IMLK+G YG +RF LP+ P AS + + FLSL+A+IY LV++VQ D Sbjct: 242 APTGGSIVLAAIMLKLGAYGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQD 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSSIAHMG+VT+G F V+G + QM+SHG VS A+F C+GV+YD++HTR+ Sbjct: 302 MKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFMCIGVLYDQMHTRE 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+V+ MPR+A ++F++AN GLP TSGF+GEF+VI+ + + + +LA+ ++ Sbjct: 362 ISQYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATALI 421 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A YSLWL ++V+FG V +L DL+ RE ++ +A+ T+ G+YP I D+ Sbjct: 422 LGAAYSLWLAKRVIFGAVTNHHVAELVDLNGREFLILGLLAIATLVMGVYPGIITDSIQT 481 Query: 479 PLSSIIEN 486 ++ ++++ Sbjct: 482 SVTDLLKH 489 >gi|115278544|ref|YP_762351.1| NADH dehydrogenase subunit 4 [Sorghum bicolor] gi|114309665|gb|ABI60882.1| NADH dehydrogenase subunit 4 [Sorghum bicolor] Length = 495 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 215/453 (47%), Positives = 300/453 (66%), Gaps = 3/453 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTF 94 + L +S I F++ FD ++ Q +E W+ Y + ++G+DG+S+ V+LTTF Sbjct: 40 IGLCVSLITFLYPPVPRIQFDPSTANSQFVESLRWLPYENIHLYMGIDGLSLFFVILTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CI W ++ +EY+ AFL+ E ++I LD LLFY+ E+ IPMF+IIGV Sbjct: 100 LIPICISVGWSGMRSFGKEYITAFLIREFLMIAVSCMLDPLLFYVLSESVPIPMFIIIGV 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+FFLYT GS+FML AI+++ + T+ + + ++F Q +WI Sbjct: 160 WGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDL-QILLTTEFSERRQILLWI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF SFA+K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +P+FP A+ Sbjct: 219 AFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLC 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P I+ LS IAIIY SL ++ Q D+KK+IAYSS+AHM VTIG+FS G+ G++ M Sbjct: 279 FTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILLM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLVSSALF CVGV+YDR TR + YGGLV MP ++ + FT+ANM LPGTS FI Sbjct: 339 LSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFSTIFFFFTLANMSLPGTSSFI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+++ FQ ++ VA LA+ G++L A YSLWLY +VV G K + + + DL+ RE Sbjct: 399 GEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLYKFSDLNGREVS 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V V G++P D +S+++++ Sbjct: 459 IFLPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491 >gi|258593425|emb|CBE69764.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M) (NDH-1, chain M) [NC10 bacterium 'Dutch sediment'] Length = 539 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 221/475 (46%), Positives = 323/475 (68%), Gaps = 8/475 (1%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LSI+ LP G +L + G +A+ IS +N + SL V+ FD + Q Sbjct: 7 PILSILIALPLCGA--LLLACVDGMREALIKRLAVAISGLNLLLSLIVYVRFDPAEAGMQ 64 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E WID SY LGVDGIS+ L++LTTFLTP IL+S+ I + YMI L+L+ Sbjct: 65 FVERAPWIDSIGSSYFLGVDGISLPLLLLTTFLTPIAILASFSGITNRVKAYMICVLLLQ 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + +IG F++LD++LFY+F+E LIPM+ +IGVWGG R+YA KF LYT GS+ ML A+ Sbjct: 125 TGMIGVFVALDLVLFYVFWEGMLIPMYFLIGVWGGHRRVYATVKFVLYTMAGSVLMLLAM 184 Query: 183 VVMCWEKKTSS---IIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + + + S+ DL + P+ Q ++ AF +FAIK+PMFPFHTWLP+AHV Sbjct: 185 IALAFLHRESTGRLSFDLLELIGGPIPYGTQLLLFAAFALAFAIKVPMFPFHTWLPDAHV 244 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAG++LKMG YG +RF LPLFP A+ F P+I L++I I+Y +LV+MVQ Sbjct: 245 EAPTAGSVLLAGVLLKMGTYGFLRFALPLFPEAAIAFTPLISALAVIGILYGALVAMVQD 304 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K+L+AYSS++H+G+V +GIF+ VEG++ QM++HGL + ALF VG+IY+R HTR Sbjct: 305 DLKRLVAYSSVSHLGFVMLGIFAMNVQSVEGSILQMVNHGLSTGALFLLVGMIYERRHTR 364 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I +GGL +PR+A+ +V TM+++GLPG +GF+GEFL++ F+ AVLA+ G+ Sbjct: 365 MIEEFGGLSRVLPRFALCFLVVTMSSIGLPGLNGFVGEFLILAGTFRVHKGFAVLATLGI 424 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +L+A+Y LW++++V++G S+ + L D+S RE M+ PI +L V+ G+ P P+ Sbjct: 425 ILAAVYMLWMWQRVMWGQSRRAENLTLDDISGREMAMLIPIILLIVWIGLNPNPL 479 >gi|220904921|ref|YP_002480233.1| proton-translocating NADH-quinone oxidoreductase subunit M [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869220|gb|ACL49555.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 495 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 220/473 (46%), Positives = 317/473 (67%), Gaps = 10/473 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV-ALGISTINFIFSLFVWSVFDKGR 59 M++P LS++ F+P LG ++ L GR + AL + + SL+ S FDKG Sbjct: 1 MSVPVLSLLIFVPVLGGLSLML---LPRGREETIRLGALTVCAVELALSLWALSQFDKGL 57 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 QM+E WI+ Y LG+DGIS+L + LT +T ++ S+KSI +E+ ++ Sbjct: 58 WQMQMVENRPWIESLNIRYSLGIDGISVLFLPLTALITLMGVVVSFKSITLKVKEFFVSL 117 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+LE +IG F +LD++LFY+F+EA LIPMF++IGVWGG RIYA KFFLYT GS+ M Sbjct: 118 LLLEGAMIGVFCALDLMLFYVFWEAMLIPMFLLIGVWGGPRRIYATVKFFLYTLLGSLLM 177 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L I+++ K + D+ A++ +S +Q ++ AFF +FA+K+PM+P HTWLP+AH Sbjct: 178 LVGIILLY--LKGGNTFDMLALAGQNYSKDLQLLLFWAFFAAFAVKVPMWPVHTWLPDAH 235 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +APTAGSV LAG+++KMG YG +R LP+ P A+ + LS+IAI+Y +LV + Q Sbjct: 236 TEAPTAGSVILAGVLIKMGAYGFLRISLPILPYAAWTLLTPMLILSVIAIVYGALVCLAQ 295 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TDIK+LIAYSS++HMG+VT+G+F+ + GVEG++ QML+HG+V+ ALF VG+IYDR HT Sbjct: 296 TDIKRLIAYSSVSHMGFVTLGLFALTQKGVEGSIIQMLNHGIVTGALFLAVGMIYDRTHT 355 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I YGGL MP A +VFT+A +GLPGT+GFIGEFL+++ F+ + AV+AS G Sbjct: 356 RQIRDYGGLATTMPVMAGFFLVFTLAAIGLPGTNGFIGEFLILLGGFERAPWAAVVASSG 415 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++L A Y LWLY++V F + V+ L L RE ++ +AVL + GI+P Sbjct: 416 LILGAWYMLWLYQRVFFK-QVSDTVRGLPGLDGRELSIMLTMAVLVLAIGIFP 467 >gi|320160251|ref|YP_004173475.1| NADH-quinone oxidoreductase subunit M [Anaerolinea thermophila UNI-1] gi|319994104|dbj|BAJ62875.1| NADH-quinone oxidoreductase chain M [Anaerolinea thermophila UNI-1] Length = 499 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/441 (44%), Positives = 301/441 (68%), Gaps = 7/441 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMI---EYYHWIDYFCSYHLGVDGISILLVVLT 92 VAL S + F SL+ + F G Q++ ++ + ++ +GVDG+ +L+++LT Sbjct: 33 VALITSLVTFALSLWALAQFRMGEGGLQLVFDQPWFRLAESQVTFAMGVDGLGMLMILLT 92 Query: 93 TFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 TFLTP +LS+W ++QE + +MI FL+LE+ ++G F + D++LFYIF+E +LIPM+ +I Sbjct: 93 TFLTPLALLSTWSAVQERVKGFMIFFLLLETGMLGVFTAQDLVLFYIFWEFTLIPMYFLI 152 Query: 153 GVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMW 212 G+WGG RIYAA KFFL+T FGS+ ML AI+ + T S+ DL + Q W+W Sbjct: 153 GIWGGERRIYAAVKFFLFTMFGSVLMLLAILYLGLTAGTFSLSDLVLARQVFAGAQVWLW 212 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 +AF +FAIK+PM+P HTWLP+AHV+APTAGSV LAG++LKMG YG +RF LPLFP A+ Sbjct: 213 LAFALAFAIKVPMWPLHTWLPDAHVEAPTAGSVILAGVLLKMGSYGFLRFNLPLFPEATL 272 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 AP + L++I I+Y ++VS QTD+KKL+AYSS++H+G+V +GIF+ G+ G++ Q Sbjct: 273 QLAPYMAVLAVIGILYGAVVSFAQTDVKKLVAYSSVSHLGFVMLGIFALTAQGLAGSILQ 332 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 M++HGL + ALF VG++Y+R HTR + AYGG+ +P VM+ ++++ GLP +GF Sbjct: 333 MVNHGLSTGALFLLVGMLYERRHTRQMSAYGGIWKVVPVLGAVMLFISLSSAGLPALNGF 392 Query: 393 IGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 +GEF +++ F +S A L + GV+L+A+Y L ++ +V G K + Q LKD++ Sbjct: 393 VGEFTILLGSFSSSTLGSPWFAGLGALGVILAAVYLLVMFERVFLGPVKHAENQSLKDMN 452 Query: 449 LRERCMVYPIAVLTVFFGIYP 469 LRE + PI ++ ++ G+YP Sbjct: 453 LREVLTLLPIMIVILWIGLYP 473 >gi|94502713|ref|YP_588294.1| NADH dehydrogenase subunit 4 [Zea mays subsp. mays] gi|114151576|ref|YP_740373.1| NADH dehydrogenase subunit 4 [Zea perennis] gi|114151608|ref|YP_740452.1| NADH dehydrogenase subunit 4 [Zea luxurians] gi|114151642|ref|YP_740400.1| NADH dehydrogenase subunit 4 [Zea mays subsp. parviglumis] gi|115278614|ref|YP_762511.1| NADH dehydrogenase subunit 4 [Tripsacum dactyloides] gi|40795152|gb|AAR91196.1| NADH dehydrogenase subunit 4 [Zea mays] gi|93116050|gb|ABE98683.1| NADH dehydrogenase subunit 4 [Zea mays subsp. mays] gi|93116094|gb|ABE98726.1| NADH dehydrogenase subunit 4 [Zea mays subsp. mays] gi|93116141|gb|ABE98772.1| NADH dehydrogenase subunit 4 [Zea mays subsp. mays] gi|102567910|gb|ABF70827.1| NADH dehydrogenase subunit 4 [Zea perennis] gi|102567975|gb|ABF70859.1| NADH dehydrogenase subunit 4 [Zea mays subsp. parviglumis] gi|102579643|gb|ABF70923.1| NADH dehydrogenase subunit 4 [Zea mays subsp. mays] gi|110287604|gb|ABG65650.1| NADH dehydrogenase subunit 4 [Zea luxurians] gi|114432105|gb|ABI74654.1| NADH dehydrogenase subunit 4 [Tripsacum dactyloides] Length = 495 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 215/453 (47%), Positives = 300/453 (66%), Gaps = 3/453 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTF 94 + L +S I F++ FD ++ Q +E W+ Y + ++G+DG+S+ V+LTTF Sbjct: 40 IGLCVSLITFLYPPVPRIQFDPSTANSQFVESLRWLPYENIHLYMGIDGLSLFFVILTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CI W ++ +EY+ AFL+ E ++I LD LLFY+ E+ IPMF+IIGV Sbjct: 100 LIPICISVGWSGMRSFGKEYITAFLIREFLMIAVSCMLDPLLFYVLSESVPIPMFIIIGV 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+FFLYT GS+FML AI+++ + T+ + + ++F Q +WI Sbjct: 160 WGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDL-QILLTTEFSERRQILLWI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF SFA+K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +P+FP A+ Sbjct: 219 AFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLC 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P I+ LS IAIIY SL ++ Q D+KK+IAYSS+AHM VTIG+FS G+ G++ M Sbjct: 279 FTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIPGIGGSILLM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLVSSALF CVGV+YDR TR + YGGLV MP ++ + FT+ANM LPGTS FI Sbjct: 339 LSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFSTIFFFFTLANMSLPGTSSFI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+++ FQ ++ VA LA+ G++L A YSLWLY +VV G K + + + DL+ RE Sbjct: 399 GEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLYKFSDLNGREVS 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V V G++P D +S+++++ Sbjct: 459 IFLPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491 >gi|81176524|ref|YP_398409.1| nad4 [Triticum aestivum] gi|78675248|dbj|BAE47673.1| nad4 [Triticum aestivum] gi|164422219|gb|ABY55192.1| NADH dehydrogenase subunit 4 [Bambusa oldhamii] gi|169649060|gb|ACA62621.1| nad4 [Triticum aestivum] gi|291498610|gb|ADE08084.1| nad4-1 [Triticum aestivum] gi|291498611|gb|ADE08085.1| nad4-2 [Triticum aestivum] gi|291498612|gb|ADE08086.1| nad4-3 [Triticum aestivum] Length = 495 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 215/453 (47%), Positives = 299/453 (66%), Gaps = 3/453 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTF 94 + L +S I F++ FD + Q +E W+ Y + ++G+DG+S+ V+LTTF Sbjct: 40 IGLCVSLITFLYPPVPRIQFDPSTAKSQFVESLRWLPYENIHLYMGIDGLSLFFVILTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CI W ++ +EY+ AFL+ E ++I LD LLFY+ E+ IPMF+IIGV Sbjct: 100 LIPICISVGWSGMRSFGKEYITAFLIREFLMIAVSCMLDPLLFYVLSESVPIPMFIIIGV 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+FFLYT GS+FML AI+++ + T+ + + ++F Q +WI Sbjct: 160 WGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDL-QILLTTEFSERRQILLWI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF SFA+K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +P+FP A+ Sbjct: 219 AFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLC 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P I+ LS IAIIY SL ++ Q D+KK+IAYSS+AHM VTIG+FS G+ G++ M Sbjct: 279 FTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILLM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLVSSALF CVGV+YDR TR + YGGLV MP ++ + FT+ANM LPGTS FI Sbjct: 339 LSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFSTIFFFFTLANMSLPGTSSFI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+++ FQ ++ VA LA+ G++L A YSLWLY +VV G K + + + DL+ RE Sbjct: 399 GEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLYKFSDLNGREVS 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V V G++P D +S+++++ Sbjct: 459 IFLPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491 >gi|116624765|ref|YP_826921.1| proton-translocating NADH-quinone oxidoreductase subunit M [Candidatus Solibacter usitatus Ellin6076] gi|116227927|gb|ABJ86636.1| proton-translocating NADH-quinone oxidoreductase, chain M [Candidatus Solibacter usitatus Ellin6076] Length = 526 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 216/505 (42%), Positives = 317/505 (62%), Gaps = 20/505 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ L+I+ F P G+ V+LF G + A ++ F+ SL + S F GR Sbjct: 1 MDQHLLTIILFTPLAGLAVLLFIP--GKSKDLIRVWANLVAFAGFLISLPLASRFQAGRP 58 Query: 61 SFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 +Q E WI ++ H+GVDGIS+L+++LTT + +L SW +IQ+ +EY F+ Sbjct: 59 GYQFEESSDWIPAIGAHFHIGVDGISMLMIMLTTVMGFIAVLCSWNAIQDRVKEYYAMFM 118 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L++ +IG FLSLD LFY+F+E L+PM+ IIGVWGG ++YAA KFFLYT GS+ ML Sbjct: 119 LLQAGMIGVFLSLDFFLFYVFWELVLVPMYFIIGVWGGPRKLYAAIKFFLYTLAGSVLML 178 Query: 180 FAIVVMCWEK---------KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 I+ + ++ + S+++ L P Q W++ AFF FAIK+PMFPFHT Sbjct: 179 LGILTLYFQHFHQFGFYSFEISNLMKL----NLPIGTQEWVFWAFFIGFAIKVPMFPFHT 234 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS--QYFAPVIFFLSLIAIIY 288 WLP+AHV+APTAGSV LA ++LKMG YG +RF LPL P AS + ++ LSLI IIY Sbjct: 235 WLPDAHVEAPTAGSVILAAVLLKMGTYGFLRFSLPLLPEASSDRTIVQILATLSLIGIIY 294 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 +LVS++Q D KKLIAYSS++H+G+ T+GIFS +G+ G++ Q ++HG+ + LF +G Sbjct: 295 GALVSLMQADWKKLIAYSSVSHLGFCTLGIFSLNPNGIAGSVLQQINHGISTGMLFMVIG 354 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 VIY+R HTR+I YGGL H MP++A++ + +++ GLP +GF+GEF ++ F+ S Sbjct: 355 VIYERRHTREIKEYGGLAHVMPKFAIIFAIAMLSSAGLPLLNGFVGEFTIMQGAFEASWV 414 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 A A GV+L A Y LWLY++ + G K + D+S RE M P+ ++ GIY Sbjct: 415 WAAFAVTGVILGAAYLLWLYQRTMLGQVTNGKNLTIPDMSAREVAMFVPLIAWAIWIGIY 474 Query: 469 PVPIRDTFSVPLSSIIENYTLKTGY 493 P P D P++ I++ ++ GY Sbjct: 475 PKPYFDILRQPVTEIVQR--VRPGY 497 >gi|115304392|ref|YP_762696.1| NADH:ubiquinone oxidoreductase subunit 4 [Ustilago maydis] gi|121919093|sp|Q0H8X6|NU4M_USTMA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|72256222|gb|AAZ67012.1| NADH:ubiquinone oxidoreductase subunit 4 [Ustilago maydis] Length = 484 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 208/484 (42%), Positives = 317/484 (65%), Gaps = 10/484 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRS---FFGVALGISTINFIFSLFVWSVFDKGRSSF 62 L+++ +P +G ++ + G R+S +ALG S INF+ S+ +W FD S + Sbjct: 2 LTLLLIIPLVGA--LMLAPMQGNTRQSESQMKRLALGTSLINFVLSIVLWGEFDSSTSEY 59 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q + ++ ++ FC H+GVDGIS+ V+LTTF+TP CILS+W +I+E + +++ FLVLE Sbjct: 60 QFTQEFNQVN-FCHLHIGVDGISLYFVLLTTFITPICILSNWDNIKEQLKYFLMCFLVLE 118 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFA 181 +++I F+ LD+LLFY+FFE+ LIP+F+I+G+WGGS R+ AA+ FLYT FGS+FML A Sbjct: 119 TLLIAVFVVLDILLFYVFFESVLIPLFLIVGIWGGSATRVRAAFLLFLYTLFGSLFMLLA 178 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 +V+ + ++ + ++S+ Q +W+A F S AIK P+ PFH WLP AH +AP Sbjct: 179 FLVIYYNVGSTDF-QVVSLSEINLESQKLLWLAVFISMAIKTPLLPFHVWLPRAHAEAPL 237 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LAG++LK+ YG +R L+ P A+ YF+P++ +++I +IYASL ++ QTD K Sbjct: 238 AGSVILAGLILKLATYGYMRILIQFLPDATSYFSPLVQTIAVITLIYASLATLRQTDFKA 297 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIF 360 L+AYSSI HM V +G+FS G++GA+ ++HG+VS ALF V GV+YDR HTR I Sbjct: 298 LVAYSSIGHMAVVVLGLFSNTIQGIDGALLLSIAHGVVSPALFILVGGVLYDRYHTRTIR 357 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 Y G+ MP ++++ VFT+ N +P ++ + GEFL + FQ + AVL S G+VLS Sbjct: 358 YYRGMTAYMPLFSIMFFVFTIFNAAVPLSANWAGEFLCLAGAFQRNPVFAVLGSTGIVLS 417 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A YS+WLY ++ FG + + + DL+ RE ++ P+ + V FGI+P I D+ Sbjct: 418 AAYSIWLYNRIAFG-AWSKYLNYTTDLTRREFMLLLPLLFVAVVFGIFPNIILDSIHAST 476 Query: 481 SSII 484 S +I Sbjct: 477 SGLI 480 >gi|153799794|gb|ABS50628.1| NADH dehydrogenase subunit 4 [Arabidopsis thaliana] gi|153799798|gb|ABS50630.1| NADH dehydrogenase subunit 4 [Arabidopsis thaliana] Length = 447 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 212/436 (48%), Positives = 288/436 (66%), Gaps = 3/436 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTF 94 + L S I F++S FD + Q +E W+ Y +++LG+DGIS+ V+LTTF Sbjct: 8 IGLCASLITFLYSPVPRIQFDSSTAKSQFVESLRWLPYENINFYLGIDGISLFFVILTTF 67 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CI W ++ +EY+ AFL+ E ++I F LD+LLFY+F E+ IPMF+IIGV Sbjct: 68 LIPICISVGWSGMRSYGKEYITAFLIREFLMIAVFRMLDLLLFYVFPESVPIPMFIIIGV 127 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+FFLYT GS+FML AI+++ ++ T+ + + ++F Q ++WI Sbjct: 128 WGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTTDL-QISLTTEFSERRQIFLWI 186 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 A F SFA+K+PM P H WLP AHV+APTAGSV LAGI LK G +G +RF +P+FP A+ Sbjct: 187 ASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLKFGTHGFLRFSIPMFPEATLC 246 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 P I+ LS IAIIY SL + Q D+KK+IAYSS+AHM VTIG+FS G+ G++ M Sbjct: 247 STPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILPM 306 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLV SALF CVGV+YDR TR + YGGLV MP + + FT+ANM PGTS FI Sbjct: 307 LSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLSTIFFSFTLANMSSPGTSSFI 366 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+++ FQ ++ VA LA+ G++L A YSLWLY +VV G K + + + D + RE Sbjct: 367 GEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLHKFSDSNGREVS 426 Query: 454 MVYPIAVLTVFFGIYP 469 + P V V G++P Sbjct: 427 IFIPFLVGVVRMGVHP 442 >gi|1709382|sp|Q04050|NU4M_BRACM RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|12770|emb|CAA43207.1| NADH dehydrogenase subunit 4 [Brassica rapa] gi|738524|prf||2001250A NADH dehydrogenase:SUBUNIT=4 Length = 495 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 213/453 (47%), Positives = 295/453 (65%), Gaps = 3/453 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTF 94 + L S I F++S FD + Q +E W+ Y +++LG+DGIS+ V+LTTF Sbjct: 40 IGLCASLITFLYSPVPRIQFDSSTAKSQFVESLRWLPYENINFYLGIDGISLFFVILTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CI W ++ +EY+ AFL+ E ++I F LD+LLFY+F E+ IPMF+IIGV Sbjct: 100 LIPICISVGWSGMRSYGKEYITAFLIREFLMIAVFRMLDLLLFYVFPESVPIPMFIIIGV 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+FFLYT GS+FML AI+++ ++ T+ + + ++F Q ++WI Sbjct: 160 WGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTTDL-QISLTTEFSERRQIFLWI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 A F SFA+K+PM P H WLP AHV+APTAGSV LAGI LK G +G +RF +P+FP A+ Sbjct: 219 ASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLKFGTHGFLRFSIPMFPEATLC 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 P I+ LS IAIIY SL + Q D+KK+IAYSS+AHM VTIG+FS G+ G++ M Sbjct: 279 STPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILPM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLV SALF CVGV+YDR TR + YGGLV MP + + FT+ANM PGTS FI Sbjct: 339 LSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLSTIFFSFTLANMSSPGTSSFI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEF +++ FQ ++ VA LA+ G++L A YSLWLY +VV G K + + + D + RE Sbjct: 399 GEFPILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLHKFSDSNGREVS 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V V G++P D +S+++++ Sbjct: 459 IFIPFLVGLVRMGVHPKVFPDCMHTSVSNLVQH 491 >gi|171463538|ref|YP_001797651.1| proton-translocating NADH-quinone oxidoreductase, chain M [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193076|gb|ACB44037.1| proton-translocating NADH-quinone oxidoreductase, chain M [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 488 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 200/435 (45%), Positives = 294/435 (67%), Gaps = 2/435 (0%) Query: 41 STINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFC 99 + + FI +L + FD Q +E WI Y +Y+LG+DGIS+ +VLT F+ Sbjct: 37 AVLGFIAALPLILQFDIANPGMQFVEKISWIPRYDINYYLGIDGISVWFIVLTAFINIIV 96 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 ++++W+ I+ +YM +F++L ++IG F +LD LLFY+FFEA+LIPM++IIGVWGG Sbjct: 97 VIAAWEVIETKVSQYMASFMILSGLMIGVFCALDALLFYVFFEATLIPMYIIIGVWGGHN 156 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF 219 RIYAA+KFFLYT GS+ L A++ + T I+ ++ ++ Q ++ AFF +F Sbjct: 157 RIYAAFKFFLYTLLGSLLTLIAMLYLYNVTNTFDIL-VWQNTRLDIVEQILLFAAFFMAF 215 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 A+K+PM+P HTWLP+ HV+APT GSV LA IMLK+G YG +RF LP+ P ASQY P + Sbjct: 216 AVKVPMWPLHTWLPDVHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASQYLGPFVI 275 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 FLSL+A++Y V++VQ D+KKL+AYSS+AHMG+VT+G F G+EG + QM+SHG V Sbjct: 276 FLSLVAVMYVGAVALVQKDMKKLVAYSSVAHMGFVTLGFFLFSPLGIEGGIVQMISHGFV 335 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 + A+F +GV+YDR+HTR I YGG+VH MP + ++ MAN GLP TSGF+GEF+VI Sbjct: 336 AGAMFLSIGVLYDRMHTRQIADYGGVVHRMPAFTAFAVLMAMANCGLPATSGFVGEFMVI 395 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIA 459 ++ + +LA+ ++L A YSLW+ ++V FG V++LKDL+ RE ++ ++ Sbjct: 396 LAAVDYDFVIGILAATALILGAAYSLWMVKRVFFGTINNAHVEELKDLNCREYFLMAVLS 455 Query: 460 VLTVFFGIYPVPIRD 474 + + G+YP P D Sbjct: 456 ICIIGMGVYPKPFTD 470 >gi|315465328|emb|CBQ72563.1| NADH:ubiquinone oxidoreductase chain 4 [Sporisorium reilianum] Length = 484 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 202/451 (44%), Positives = 302/451 (66%), Gaps = 5/451 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 VALG S INF+ S+ +WS FD S +Q + ++ ++ FC H+GVDGIS+ V+LTTF+ Sbjct: 33 VALGTSLINFVLSILLWSEFDSSTSEYQFTQEFNQVN-FCHLHIGVDGISLYFVLLTTFI 91 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 TP CILS+W +I++ + +++ FLVLE+++I F+ LD+LLFY+FFE+ LIP+F+I+G+W Sbjct: 92 TPICILSNWDNIKQQLKYFLMCFLVLETLLIAVFVVLDILLFYVFFESVLIPLFLIVGIW 151 Query: 156 GGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 GGS R+ AA+ FLYT FGS+FML A +V+ + ++ + ++S+ Q +W+A Sbjct: 152 GGSATRVRAAFLLFLYTLFGSLFMLLAFLVIYYNVGSTDF-QVVSLSEINLESQKLLWLA 210 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 F S AIK P+ PFH WLP AH +AP AGSV LAG++LK+ YG +R L+ P A+ YF Sbjct: 211 VFISMAIKTPLLPFHVWLPRAHAEAPLAGSVILAGLILKLATYGYMRILIQFLPDATSYF 270 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 +P++ +++I +IYASL ++ QTD K L+AYSSI HM V +G+FS G++GA+ + Sbjct: 271 SPLVQTIAVITLIYASLATLRQTDFKALVAYSSIGHMAVVVLGLFSNTIQGIDGALLLSI 330 Query: 335 SHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +HG+VS ALF V GV+YDR HTR I Y G+ MP ++++ VFT+ N +P ++ + Sbjct: 331 AHGVVSPALFILVGGVLYDRYHTRTIRYYRGMTAYMPLFSIMFFVFTIFNAAVPLSANWA 390 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL + FQ + AVL S G+VLSA YS+WLY ++ FG + + DL+ RE Sbjct: 391 GEFLCLAGAFQRNPVFAVLGSTGIVLSAAYSIWLYNRIAFG-GWSKYLNYTTDLTRREFM 449 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 ++ P+ + V FGI+P I D+ S ++ Sbjct: 450 LLLPLLFVAVVFGIFPNIILDSVHASTSGLL 480 >gi|251773155|gb|EES53708.1| NADH dehydrogenase (quinone), chain M [Leptospirillum ferrodiazotrophum] Length = 468 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 218/465 (46%), Positives = 310/465 (66%), Gaps = 4/465 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 +++P L+ + F P + +IL Y G ALGI+ I F+ SL + + Sbjct: 4 LSVPILTFLIFFPVVASLLIL-PFYKKPGTEGVVKWTALGITVIEFLVSLSLLIGNNPHL 62 Query: 60 SSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q +E + WI + Y LG+DGIS++LV++TTFL P IL+SW I +N +MI Sbjct: 63 YQMQFVENHLWIPFGNIHYALGIDGISLVLVLMTTFLMPMTILTSWVGISKNLPLFMINL 122 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LVLE +IG F + D +LFY+F+EA LIPM++IIGVWGG RIYAA KFFLYT GS+ + Sbjct: 123 LVLEGAMIGVFCATDFVLFYVFWEAMLIPMYLIIGVWGGPNRIYAAIKFFLYTLAGSLLL 182 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L AI+ + + + I + + S Q ++A F +FA+KIPMFPFHTWLP+AHV+ Sbjct: 183 LVAIIALYFVGGHTFDIARLSGQHYGMSFQILAFLAMFVAFAVKIPMFPFHTWLPDAHVE 242 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LA IMLKMG YG +RF LP+FP AS +FAP+I LS+IAII+ + +++ Q D Sbjct: 243 APTAGSVILASIMLKMGAYGFLRFSLPMFPDASHFFAPMILTLSVIAIIWGAFMALAQED 302 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKLIAYSS++HMG VT+GIF G+EGA+ QML+HG+ + ALF C+GV+YDR H+R Sbjct: 303 MKKLIAYSSVSHMGVVTLGIFVANTQGIEGALMQMLNHGITTGALFLCIGVLYDRSHSRQ 362 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + YGGL MP Y+ ++++F ++++ LPGT+ F+GEFLV++ F+ V+ LA+ GV+ Sbjct: 363 LSEYGGLAKQMPVYSTLLVIFALSSLALPGTNSFVGEFLVLIGSFKTHAVVSSLATTGVI 422 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 LSA+Y L+L +VV+GV K + DL E + P+ V+ + Sbjct: 423 LSAMYLLYLLSRVVWGV-YTPKSYAMPDLRAYEWGSLIPLVVMVI 466 >gi|313768493|ref|YP_004062169.1| NADH dehydrogenase subunit 4 [Gracilariophila oryzoides] gi|312844620|gb|ADR03185.1| NADH dehydrogenase subunit 4 [Gracilariophila oryzoides] Length = 491 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 223/437 (51%), Positives = 301/437 (68%), Gaps = 3/437 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH-LGVDGISILLVVLTTF 94 +AL + + F+FSL +W FD S FQ E + W+ Y+ LG+DGIS+ ++LTT Sbjct: 38 IALNTACVTFLFSLVLWIQFDSHTSLFQFSETFDWLPSINLYYTLGIDGISLFFILLTTL 97 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 LT CIL SW SI+ +EY+I FL+LE +I F LD+L FYIFFE+ LIPMF+I+G+ Sbjct: 98 LTIICILVSWSSIKFLVKEYLICFLLLEFFLIQVFSVLDLLWFYIFFESVLIPMFLIVGI 157 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG ER I AAY+FFLYT GS+ ML A++ + ++ ++ + L F Q W+ Sbjct: 158 WGSRERKIRAAYQFFLYTLVGSLLMLIALLTIYFQVGSTDL-QLIGYHNFSEIKQIIFWL 216 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF SFA+KIPM PFH WLP AH +APTAGSV LAGI+LKMGGYG +RF +PL P A Y Sbjct: 217 AFFASFAVKIPMIPFHIWLPEAHAEAPTAGSVILAGILLKMGGYGFLRFSIPLLPEACIY 276 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P++F LS+IAI+YASL ++ Q D+KK+IAYSS++HMG+VTIGIFS G+EG++ M Sbjct: 277 FTPLVFTLSIIAILYASLTTLRQVDLKKIIAYSSVSHMGFVTIGIFSLNLHGIEGSILLM 336 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLVSSALF CVG++YDR TR + Y GL+ MP + V + FT AN+G PGTS FI Sbjct: 337 LSHGLVSSALFLCVGILYDRHKTRILKYYSGLMQVMPIFGVFFLFFTFANLGFPGTSSFI 396 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GE LV++ FQ + +A AS G++L A YS+WL+ ++ FG K + +D+S RE Sbjct: 397 GELLVLVGAFQLNRILAFFASIGMILGASYSIWLFNRISFGTLKIHYFKLFQDVSRREFW 456 Query: 454 MVYPIAVLTVFFGIYPV 470 ++ P+ L ++ GIYP+ Sbjct: 457 ILLPLTFLILWMGIYPI 473 >gi|14255|emb|CAA40452.1| NADH-ubiquinone oxidoreductase chain 4 [Triticum aestivum] gi|21824|emb|CAA40453.1| NADH-ubiquinone oxidoreductase chain 4 [Triticum aestivum] Length = 495 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 214/453 (47%), Positives = 298/453 (65%), Gaps = 3/453 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTF 94 + L +S I F++ FD + Q +E W+ Y + ++G+DG+S+ V+LTTF Sbjct: 40 IGLCVSLITFLYPPVPRIQFDPSTAKSQFVESLRWLPYENIHLYMGIDGLSLFFVILTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CI W ++ +EY+ AFL+ E ++I LD LLFY+ E+ IPMF+IIGV Sbjct: 100 LIPICISVGWSGMRSFGKEYITAFLIREFLMIAVSCMLDPLLFYVLSESVPIPMFIIIGV 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+FFLYT GS+FML AI+++ + T+ + + ++F Q +WI Sbjct: 160 WGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDL-QILLTTEFSERRQILLWI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF SFA+K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +P+FP A+ Sbjct: 219 AFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLC 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P I+ LS IAIIY SL ++ Q D+KK+IAYSS+AHM VTIG+FS G+ G++ M Sbjct: 279 FTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILLM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLVSSALF CVGV+YDR TR + YGGLV MP ++ + FT+ANM LPGTS FI Sbjct: 339 LSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFSTIFFFFTLANMSLPGTSSFI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+++ FQ ++ VA L + G++L A YSLWLY +VV G K + + + DL+ RE Sbjct: 399 GEFLILVGAFQRNSLVATLRALGMILGAAYSLWLYNRVVSGNLKPDFLYKFSDLNGREVS 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V V G++P D +S+++++ Sbjct: 459 IFLPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491 >gi|121604342|ref|YP_981671.1| proton-translocating NADH-quinone oxidoreductase subunit M [Polaromonas naphthalenivorans CJ2] gi|120593311|gb|ABM36750.1| NADH dehydrogenase subunit M [Polaromonas naphthalenivorans CJ2] Length = 491 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 216/494 (43%), Positives = 326/494 (65%), Gaps = 16/494 (3%) Query: 5 FLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTI----NFIFSLFVWSVFDKGR 59 LS+ ++P F GV L GR S I+ I +F+ +L ++ F G Sbjct: 3 LLSLAIWMPIFFGV------GLLALGRESQAHTVRWIALIGAIASFLVTLPLYDGFQLGT 56 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S+ Q +E WI F +YHLGVDGIS+ V+LT F+ I++SW+SI +YM +F Sbjct: 57 SAMQFVEKSSWIPRFNMNYHLGVDGISLWFVLLTAFINVVVIIASWESITTRVNQYMASF 116 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L ++IG F +LD +LFY+FFEA+LIPM++IIG+WGG +IYAA+KFFLYT GS+ M Sbjct: 117 LILSGLMIGVFAALDGMLFYVFFEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLLGSLLM 176 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A++ + K+ D+ A K P S Q ++ +FF +FA+K+PM+P HTWLP+ H Sbjct: 177 LVALIFLY--NKSGGSFDILAWHKLPLSATAQTLLFFSFFAAFAVKVPMWPVHTWLPDVH 234 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT GS LA IMLK+G YG +RF +P+ P AS +A +I LSLIA+IY LV++VQ Sbjct: 235 VEAPTGGSAVLAAIMLKLGAYGFLRFSMPITPDASHEWAGLIIALSLIAVIYVGLVALVQ 294 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+KKL+AYSS+AHMG+VT+G F V G + QM++HG VS+A+F C+GV+YDR+H+ Sbjct: 295 RDMKKLVAYSSVAHMGFVTLGFFLFNDLTVSGGIVQMIAHGFVSAAMFLCIGVLYDRVHS 354 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R+I +YGG+V+ MP++A ++F MAN GLP T+GF+GE++VI+ +++ + A+ Sbjct: 355 REIASYGGVVNTMPKFAAFALLFAMANCGLPATAGFVGEWMVILGAVKSNFWIGAAAATA 414 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++ A Y+LW+Y++V G E V+ + D++ RE M+ +A+ T++ GIYP P D Sbjct: 415 LISGAAYTLWMYKRVYLGPVTNENVKGMLDINNREFLMLGLLAIATLYMGIYPKPFTDVM 474 Query: 477 SVPLSSIIENYTLK 490 + ++ ++++ L Sbjct: 475 NTSVADLLKHVALS 488 >gi|327195229|ref|YP_004339011.1| NADH dehydrogenase subunit 4 [Coccomyxa sp. C-169] gi|325070725|gb|ADY75453.1| NADH dehydrogenase subunit 4 [Coccomyxa sp. C-169] Length = 490 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 214/444 (48%), Positives = 300/444 (67%), Gaps = 10/444 (2%) Query: 52 WSVFDKGRSSFQMIEYYHWID--------YFCSYHLGVDGISILLVVLTTFLTPFCILSS 103 W FD FQ + + I S+ +G+DGIS+ +VLTTFL P CIL Sbjct: 48 WIQFDNSSGRFQFVNSFALIQPSANGGEYTTLSFVVGLDGISLFFIVLTTFLIPICILVG 107 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IY 162 W +I+ + +EY +AFLVLES++I AF LD+L FYIFFE+ LIPMF+IIGVWG ER I Sbjct: 108 WTTIKASVKEYCVAFLVLESLLIAAFSVLDLLFFYIFFESVLIPMFLIIGVWGSRERKIR 167 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 AAY+FFLYT GS+ ML AI+++ + T+ + LYA ++F + + +W+AFF SFA+K Sbjct: 168 AAYQFFLYTLVGSLLMLLAILLIYCQTGTTDLQILYA-TQFSETRELILWLAFFASFAVK 226 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF +PLFP AS +F P+I LS Sbjct: 227 VPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPLFPYASIFFTPLIETLS 286 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 ++AIIY+SL ++ Q D+KK+IAYSS+AHM +VT+G+FS GVEGA+ ML+HGLVS A Sbjct: 287 ILAIIYSSLTTLRQVDLKKIIAYSSVAHMNFVTLGLFSLNPQGVEGAVLLMLAHGLVSPA 346 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF VG +YDR TR + YGG +MP +A++ + FTMAN+ LPGT+ F+GEFLV++ Sbjct: 347 LFLLVGFLYDRHKTRLLRYYGGCARSMPIFAIMFLFFTMANISLPGTANFVGEFLVLVGA 406 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 F+++ VA +A+ +VL A Y+LWL ++++G K + DLS RE ++ P Sbjct: 407 FRSNTFVATMAASTMVLGAAYALWLCNRLLYGFPKPYYLAAFADLSRREFFLLLPFVASV 466 Query: 463 VFFGIYPVPIRDTFSVPLSSIIEN 486 + G+ P D +++I++ Sbjct: 467 LVMGLMPDVFLDVIRCSVANILQR 490 >gi|121609750|ref|YP_997557.1| proton-translocating NADH-quinone oxidoreductase subunit M [Verminephrobacter eiseniae EF01-2] gi|121554390|gb|ABM58539.1| proton-translocating NADH-quinone oxidoreductase, chain M [Verminephrobacter eiseniae EF01-2] Length = 491 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/435 (45%), Positives = 301/435 (69%), Gaps = 5/435 (1%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 F G ++ Q +E WI+ F YHLGVDGIS V LT F T +++SW++I E + Sbjct: 52 FQPGTAAMQFVEKTAWIERFNVHYHLGVDGISFWFVPLTAFTTVIVVIASWQAITERVNQ 111 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 YM AFL+L ++IG F +LD +LFY+FFEA+LIPM++IIG+WGG +IYAA+KFFLYT Sbjct: 112 YMGAFLILSGLMIGVFSALDGILFYVFFEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLL 171 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF--SIQYWMWIAFFCSFAIKIPMFPFHTW 231 GS+ ML A++ + ++ +D+ + P + Q ++ AFF +FA+K+PM+P HTW Sbjct: 172 GSLLMLIALIYLY--NQSGGSVDIATWQQLPLGSTAQSLLFFAFFAAFAVKVPMWPVHTW 229 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+ HV+APT GS LA IMLK+G YG +RF LP+ P A++ +A ++ LSLIA+IY L Sbjct: 230 LPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSLPITPDAAREWAWLMIALSLIAVIYVGL 289 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++VQ D+KKL+AYSS+AHMG+VT+G F + GV G + QM++HG VS+A+F +GV+Y Sbjct: 290 VALVQKDMKKLVAYSSVAHMGFVTLGFFIFNELGVAGGLVQMIAHGFVSAAMFLSIGVLY 349 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+H+RDI AYGG+V+ MP + ++F MAN GLPGT+GF+GE++VI++ + + + + Sbjct: 350 DRVHSRDIAAYGGVVNRMPNFTAFALLFAMANCGLPGTAGFVGEWMVILAAVKTNFWIGL 409 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 A+ +VL A Y+LW++++V G ++V+ L D+ RE ++ +A+ + G+YP P Sbjct: 410 AAATALVLGAAYTLWMFKRVYLGPVGNDQVRGLSDIGGREFLVLAWLAIAVLALGLYPRP 469 Query: 472 IRDTFSVPLSSIIEN 486 + D ++ ++ + Sbjct: 470 VTDLMGPSVTELLRH 484 >gi|89900298|ref|YP_522769.1| proton-translocating NADH-quinone oxidoreductase subunit M [Rhodoferax ferrireducens T118] gi|89345035|gb|ABD69238.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodoferax ferrireducens T118] Length = 491 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 201/472 (42%), Positives = 316/472 (66%), Gaps = 9/472 (1%) Query: 26 LGCGR----RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLG 80 L GR R+ VAL + ++F+ +L +++ F G ++ Q +E WI+ F +YH+G Sbjct: 19 LALGRDDQARTVRWVALVGAIVSFLVTLPLYAGFKLGTAAMQFVEKAPWIERFNVNYHMG 78 Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIF 140 VDGIS+ LV+LT F+ +++ W+ I +YM AFL+L + IG F +LD +LFY+F Sbjct: 79 VDGISLWLVILTAFINVVVVIAGWEVITRRVNQYMGAFLILSGLQIGVFCALDGMLFYVF 138 Query: 141 FEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM 200 FEA+L+PM++IIG+WGG +IYAA+KFFLYT GS+ ML A++ + K+ DL Sbjct: 139 FEATLVPMYLIIGIWGGPNKIYAAFKFFLYTLLGSLLMLVALIFLY--TKSGGSFDLATW 196 Query: 201 SKFPF--SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 + P + Q ++ AF +FA+K+PM+P HTWLP+ HV+APT GS LA +MLK+G YG Sbjct: 197 HQLPLAGTAQTLLFFAFLAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAVMLKLGAYG 256 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +RF LP+ P A+ ++ ++ LSLIA++Y LV++VQTD+KKL+AY+S+AHMG+VT+G Sbjct: 257 FLRFSLPIAPDAAHEWSGLMIALSLIAVVYVGLVALVQTDMKKLVAYASVAHMGFVTLGF 316 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 F G+ GA+ QM+SHG VS+A+F +GV+YDR H+R+I +YGG+V+ MP++ ++ Sbjct: 317 FIFNDLGLSGALVQMVSHGFVSAAMFLSIGVLYDRAHSREIASYGGVVNTMPKFTAFALL 376 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 F MAN GLPGT+GF+GE++VI+ + + + A+ +V A Y+LW+ ++V G Sbjct: 377 FAMANCGLPGTAGFVGEWMVIIGAVKANFWLGFAAASSLVFGAAYTLWMVKRVYLGPVAN 436 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 + V+ LKD++ RE M+ +A+ ++ G+YP P D ++ ++++ L Sbjct: 437 DHVKALKDINAREFLMLSLLAIAVLYMGLYPKPFTDVMDTSVAELLKHVALS 488 >gi|8954372|ref|NP_059361.1| NADH dehydrogenase subunit 4 [Cyanidioschyzon merolae] gi|4115785|dbj|BAA36523.1| NADH-ubiquinone oxidoreductase chain 4 [Cyanidioschyzon merolae strain 10D] Length = 492 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 213/459 (46%), Positives = 318/459 (69%), Gaps = 5/459 (1%) Query: 13 PFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID 72 P LG +I+F FF +L IS++ F+ ++++W +FD+ FQ + ++ Sbjct: 18 PLLGCIIIIFIPRNQLVLIRFF--SLIISSLTFLITIYLWILFDESYFYFQFVISKKILN 75 Query: 73 Y-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLS 131 + Y LGVDGIS+ ++LT+ L C L +W + +E +E++I F ++ES+++ AF + Sbjct: 76 FELIQYFLGVDGISLFFIILTSLLIFVCFLLNWNANEEYNKEFLILFFMIESLLLNAFST 135 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +D+LLFYIFFE LIP+F IIG++G R I A+Y+FFLYT GS+ +L AI+++ +E Sbjct: 136 IDLLLFYIFFEGVLIPIFTIIGIFGSRTRKIRASYQFFLYTLLGSLLILIAILLIYFETG 195 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 T++I LY + + Q +W+AFF SFA+K+PM PFH WLP AH +APT+GS+ LAGI Sbjct: 196 TTNINFLYNVDFYERK-QLLLWLAFFASFAVKVPMIPFHIWLPEAHAEAPTSGSIILAGI 254 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +RF LPLFP AS Y++P+I+ LS+IAIIYASL ++ Q D+KK++AYSSIAH Sbjct: 255 LLKLGGYGFLRFSLPLFPYASFYYSPLIYTLSIIAIIYASLTTLRQVDLKKIVAYSSIAH 314 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 +GYV +GIFS G+EG++ +L HG VSSALF CVGV+YDR TR + Y GL +P Sbjct: 315 IGYVILGIFSFNVQGLEGSLLLILGHGFVSSALFLCVGVLYDRYKTRILKYYSGLTTFIP 374 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 +AV++ FT+AN+GLPGTS FIGEF++++ + Q S + ++ G++LSA Y LW Y + Sbjct: 375 LFAVLLFFFTLANIGLPGTSNFIGEFIILIGLIQTSVIATIFSTSGIILSASYCLWFYNR 434 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++FG K + L+D+S +E + P+ +LT+ G+YP Sbjct: 435 LIFGNLKENYFKFLQDISKKEFMALIPLVILTLIMGLYP 473 >gi|171058197|ref|YP_001790546.1| proton-translocating NADH-quinone oxidoreductase subunit M [Leptothrix cholodnii SP-6] gi|170775642|gb|ACB33781.1| proton-translocating NADH-quinone oxidoreductase, chain M [Leptothrix cholodnii SP-6] Length = 490 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/452 (45%), Positives = 313/452 (69%), Gaps = 1/452 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 +AL + ++F+ +L + FD ++ Q E WI+ F YHLGVDGIS+ V+LT F Sbjct: 33 IALVGALVSFLITLPLIGSFDTATAAMQFQENLPWIERFNVRYHLGVDGISVWFVLLTAF 92 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T ++S+W+ I++ +YM AFL+L +++G F ++D +LFY+FFEA+LIPM++IIG+ Sbjct: 93 ITVIVVISAWEVIEKRVHQYMGAFLILSGLMVGVFSAVDGMLFYVFFEATLIPMYLIIGM 152 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 WGG+ R+YAA+KFFLYT GS+ ML A++ + ++ S I + + Q ++ A Sbjct: 153 WGGARRVYAAFKFFLYTLAGSLLMLIALIFLYYKSGGSFEILTWHALPLGETPQMLLFFA 212 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF +FA+K+PM+P HTWLP+AHV+APT GSV LA IMLK+G YG +RF LP+ P A+ + Sbjct: 213 FFAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIVPDAAMTY 272 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 AP I +SL+A+IY LV++VQ D+KKL+AYSSIAHMG+VT+G F + G+ G + QM+ Sbjct: 273 APFIITISLVAVIYIGLVALVQKDMKKLVAYSSIAHMGFVTLGFFIFSELGISGGLVQMI 332 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHG VS A+F +GV+YDR+H+R+I AYGG+V+ MP++ + F MAN GLPGT+GFIG Sbjct: 333 SHGFVSGAMFLSIGVLYDRVHSREIAAYGGVVNTMPKFTAFAVFFGMANCGLPGTAGFIG 392 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 E++VI+ + + + +LA+ ++ A Y+LW+ ++V FG + V++L D++ RE M Sbjct: 393 EWMVILGAVKYNFWIGLLAATALIFGAAYTLWMIKRVYFGDVANDDVRELTDINAREFLM 452 Query: 455 VYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + +A+ T+ G+YP P D ++ +I + Sbjct: 453 LALLAIATLAMGLYPKPFTDVMHTSVTELIRH 484 >gi|94968332|ref|YP_590380.1| proton-translocating NADH-quinone oxidoreductase, chain M [Candidatus Koribacter versatilis Ellin345] gi|94550382|gb|ABF40306.1| NADH dehydrogenase subunit M [Candidatus Koribacter versatilis Ellin345] Length = 521 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 228/479 (47%), Positives = 312/479 (65%), Gaps = 17/479 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N L++VTFLP LG ++LF R F AL IS + FI SL + FD + Sbjct: 9 NDHILTLVTFLPGLGAVLLLFFPRRDRDIRWF---ALLISLLTFIASLHLPWHFDYSKGG 65 Query: 62 FQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ WI YHLG DGISI LVVLTTFL P +L SW SI+E +E+ I L+ Sbjct: 66 FQYELNVPWITTPNIHYHLGADGISIWLVVLTTFLVPLSVLISWTSIKERVKEFFILMLI 125 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+ ++G F+SLD+ FY F+EA+LIPM ++IG++G RIYAA KFF+YT S+FML Sbjct: 126 LETAMLGVFVSLDLFQFYFFWEATLIPMALLIGIYGHERRIYAAVKFFMYTMVASVFMLA 185 Query: 181 AIVVMCW-EKKTSS--------IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 A M W KT S I L +S F + Q W+++ FF +FA+K+P+FPFHTW Sbjct: 186 A---MLWLYSKTGSFDFVEIQQAIQLGNVSGFSHA-QQWLFLGFFIAFAVKVPLFPFHTW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHV+APTAGSV LAG++LKMG YG +RF L LFP A++ AP I L++I IIY +L Sbjct: 242 LPDAHVEAPTAGSVLLAGVLLKMGTYGLLRFNLGLFPEAARRNAPWIIALAIIGIIYGAL 301 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++VQ ++KKL+AYSS++H+G+ +GIFS GV G+++QML+HG+ + LF +G+IY Sbjct: 302 VALVQPNMKKLVAYSSVSHLGFCVLGIFSFTAMGVSGSVYQMLNHGVSTGGLFMLLGMIY 361 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R HT +I YGGL MP +A +V T+A+ GLP +GF+GEFLV+ FQ + Sbjct: 362 ERRHTYEIKQYGGLATPMPVFATFFLVITLASAGLPLLNGFVGEFLVLSGAFQAKMIYGI 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 LA+ GV+ A Y LWLY+K +G E L DL+ RER ++PIAV+++ G+ P+ Sbjct: 422 LAASGVIWGAWYLLWLYQKTFYGDVTVEANNNLSDLNARERLSLWPIAVMSLVMGVVPM 480 >gi|326316111|ref|YP_004233783.1| proton-translocating NADH-quinone oxidoreductase subunit M [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372947|gb|ADX45216.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidovorax avenae subsp. avenae ATCC 19860] Length = 491 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/459 (45%), Positives = 315/459 (68%), Gaps = 5/459 (1%) Query: 31 RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLV 89 R+ +AL S I +L ++ FD G ++ Q +E WI+ F YHLG+DGIS V Sbjct: 28 RAVRWIALIGSLIGLAVTLPLYGNFDNGTAAAQFVEKILWIERFNVHYHLGLDGISFWFV 87 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 LT F+T +++SW+SI E +YM AFL+L ++IG F ++D LLFY+FFEA+LIPM+ Sbjct: 88 PLTAFITVIVVIASWESITERVNQYMGAFLILSGLMIGVFSAMDGLLFYVFFEATLIPMY 147 Query: 150 VIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI-- 207 +IIG+WGG +IYAA+KFFLYT GS+ ML A+V + ++ D+ + P S Sbjct: 148 LIIGIWGGPNKIYAAFKFFLYTLLGSLLMLIALVYLY--NQSGGSFDIATWHQLPLSARA 205 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q ++ AFF +FA+K+PM+P HTWLP+ HV+APT GS LA IMLK+G YG +RF +P+ Sbjct: 206 QTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIA 265 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P A++++A ++ LSL+A+IY LV+MVQ D+KKL+AYSS+AHMG+VT+G F GV Sbjct: 266 PDAARHWAWLMIALSLVAVIYVGLVAMVQKDMKKLVAYSSVAHMGFVTLGFFIFNDLGVS 325 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 G + QM++HG VS A+F +GV+YDR+H+R+I AYGG+V+ MP++A ++F MAN GLP Sbjct: 326 GGLVQMIAHGFVSGAMFLSIGVLYDRVHSREIAAYGGVVNTMPKFAAFALLFAMANCGLP 385 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDL 447 GT+GF+GE++VI+ + + + +LA+ ++ A Y+LW++++V G + V+ L D+ Sbjct: 386 GTAGFVGEWMVILGAVKANFWIGLLAATALIFGAAYTLWMFKRVYLGPVGNDNVRGLLDI 445 Query: 448 SLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 S RE ++ +AV ++ G+YP P D V ++ ++++ Sbjct: 446 SAREFLVLGVLAVAVLYMGLYPRPFTDVMDVSVAELLKH 484 >gi|121593389|ref|YP_985285.1| proton-translocating NADH-quinone oxidoreductase subunit M [Acidovorax sp. JS42] gi|120605469|gb|ABM41209.1| NADH dehydrogenase subunit M [Acidovorax sp. JS42] Length = 491 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/468 (43%), Positives = 308/468 (65%), Gaps = 9/468 (1%) Query: 26 LGCGRRSFFGVALGISTIN----FIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLG 80 L GR G ++ I F +L + FD G ++ Q +E WI+ F YHLG Sbjct: 19 LALGRDEHVGAVRWLALIGALAGFAVTLPLIGGFDNGSAAAQFVEKSMWIERFNVHYHLG 78 Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIF 140 VDGI+ V LT F+T +++SW++I E +YM AFL+L +++G F ++D +LFY+F Sbjct: 79 VDGIAFWFVPLTAFITVIVVIASWEAITERVNQYMAAFLILSGLMVGVFCAMDGMLFYVF 138 Query: 141 FEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM 200 FEA+LIPM++IIG+WGG +IYAA+KFFLYT GS+ L A + + ++ D+ Sbjct: 139 FEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLLGSLLTLVAFIYLY--NQSGGSFDIATW 196 Query: 201 SKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 K P S Q ++ AFF +FA+K+PM+P HTWLP+ HV+APT GS LA IMLK+G YG Sbjct: 197 HKLPLSGTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYG 256 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +RF LP+ P A+ +A ++ LSL+A+IY LV+MVQ D+KKL+AYSS+AHMG VT+G Sbjct: 257 FLRFSLPIAPDAAHEWAWLMIALSLVAVIYVGLVAMVQKDMKKLVAYSSVAHMGLVTLGF 316 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 F GV G + QM++HG VS+A+F C+GV+YDR+H+R+I AYGG+V+ MP++A ++ Sbjct: 317 FVFNDIGVSGGLVQMIAHGFVSAAMFLCIGVLYDRVHSREIAAYGGVVNTMPKFAAFALL 376 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 F+MAN GLP T+GF+GE++VI+ + V + A+ ++L A Y+LW+Y++V G Sbjct: 377 FSMANCGLPATAGFVGEWMVIIGAVKFDFWVGLGAATSLILGASYTLWMYKRVYLGPVTN 436 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + V+ L D+ RE ++ +A+ ++ GI+P P D ++ ++ + Sbjct: 437 DNVRGLADIGGREFLILGLLAIAVLYMGIHPKPFTDVMDASVAELLRH 484 >gi|148259944|ref|YP_001234071.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidiphilium cryptum JF-5] gi|146401625|gb|ABQ30152.1| NADH dehydrogenase subunit M [Acidiphilium cryptum JF-5] Length = 505 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/490 (42%), Positives = 309/490 (63%), Gaps = 5/490 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFS--SYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MN LS++T+LP G ++ F+ S R+ +AL S + + ++ + F+ Sbjct: 1 MNFHLLSLMTWLPLAGAVLMYFTGDSANPATARNARWIALWTSLLVLVLAVVMVVGFNPS 60 Query: 59 RSSFQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 FQ ++ WI Y Y +GVDGIS+ V L+ LTP +L+SW+ R+YM A Sbjct: 61 VHGFQFVDSAEWIPAYGIGYRMGVDGISLFFVALSALLTPVAVLASWRE-SRRVRDYMAA 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL+LE+M IG F +LD LLFYIFFE LIPM++IIGVWGG RI+AA KFFL+T GS+ Sbjct: 120 FLLLETMTIGMFSALDFLLFYIFFEGVLIPMYLIIGVWGGERRIHAAVKFFLFTLAGSLP 179 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML A+V M T+ ++ L + P + Q W+++AF SF +K ++P HTWLP+A+ Sbjct: 180 MLLALVWMWHHAGTTDMVQLMHTAIAP-TTQDWLFVAFLLSFGVKAAVWPMHTWLPDAYG 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +AP G++ LA ++ KMG YG +RF LP+ P A+ YF P +F L +I I+Y S ++ QT Sbjct: 239 EAPLPGTIMLAAVLSKMGAYGFLRFSLPMLPQATAYFEPFMFALGIIGIVYISFAALAQT 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIK++IAYSS+AHMG + +GIF+ +G+EGA+FQM+SHGLV +ALF CVG++ R H+ Sbjct: 299 DIKRMIAYSSVAHMGLIVVGIFTVTVAGIEGALFQMVSHGLVIAALFLCVGILLARGHSL 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 + GGL MP YA +M+F MAN+GLPGTSGF+GE LV++ Q + VA+L G+ Sbjct: 359 RLDQLGGLASRMPVYATFLMLFVMANVGLPGTSGFVGEILVMIGAIQANFWVALLVGSGM 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +LS +Y L + R+V+F ++ + D+ RE M+ P+AVL + G P + F Sbjct: 419 ILSVMYMLVMIRRVLFDKARSVANAVMADIGPREWLMLAPLAVLVIVLGFVPGGLTHIFD 478 Query: 478 VPLSSIIENY 487 + ++ + Sbjct: 479 GAVQDLVHAH 488 >gi|120609962|ref|YP_969640.1| proton-translocating NADH-quinone oxidoreductase subunit M [Acidovorax citrulli AAC00-1] gi|120588426|gb|ABM31866.1| NADH dehydrogenase subunit M [Acidovorax citrulli AAC00-1] Length = 491 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/459 (45%), Positives = 314/459 (68%), Gaps = 5/459 (1%) Query: 31 RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLV 89 R+ +AL S I +L + S FD G ++ Q +E WI+ F YHLG+DGIS V Sbjct: 28 RAVRWIALIGSLIGLAVTLPLLSGFDNGTAAAQFVEKLLWIERFNVHYHLGLDGISFWFV 87 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 LT F+T +++SW+SI E +YM AFL+L ++IG F +LD LLFY+FFEA+LIPM+ Sbjct: 88 PLTAFITVIVVIASWESITERVNQYMGAFLILSGLMIGVFSALDGLLFYVFFEATLIPMY 147 Query: 150 VIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI-- 207 +IIG+WGG +IYAA+KFFLYT GS+ ML A+V + ++ D+ + P S Sbjct: 148 LIIGIWGGPNKIYAAFKFFLYTLLGSLLMLIALVYLY--NQSGGSFDIATWHQLPLSARA 205 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q ++ AFF +FA+K+PM+P HTWLP+ HV+APT GS LA IMLK+G YG +RF +P+ Sbjct: 206 QTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIA 265 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P A++++A ++ LSLIA+IY LV+MVQ D+KKL+AYSS+AHMG+VT+G F GV Sbjct: 266 PDAARHWAWLMIALSLIAVIYVGLVAMVQKDMKKLVAYSSVAHMGFVTLGFFIFNDLGVS 325 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 G + QM++HG VS A+F +GV+YDR+H+R+I AYGG+V+ MP++A ++F MAN GLP Sbjct: 326 GGLVQMIAHGFVSGAMFLSIGVLYDRVHSREIAAYGGVVNTMPKFAAFALLFAMANCGLP 385 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDL 447 GT+GF+GE++VI+ + + + + A+ ++ A Y+LW++++V G + V+ L D+ Sbjct: 386 GTAGFVGEWMVILGAVKANFWIGLAAATALIFGAAYTLWMFKRVYLGPVGNDNVRGLLDI 445 Query: 448 SLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 S RE ++ +AV ++ G+YP P D V ++ ++++ Sbjct: 446 SAREFLVLGVLAVAVLYMGLYPRPFTDVMDVSVAELLKH 484 >gi|327398409|ref|YP_004339278.1| proton-translocating NADH-quinone oxidoreductase subunit M [Hippea maritima DSM 10411] gi|327181038|gb|AEA33219.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hippea maritima DSM 10411] Length = 521 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 212/497 (42%), Positives = 328/497 (65%), Gaps = 8/497 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 ++ P L+ +TFLP +G F++ S G + V G ++FI SL ++ FD Sbjct: 6 LHFPILTTITFLPLVGAFLVTLISEKNEGLIKY--VTFGFLVLDFIISLPLFFYFDPTTY 63 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q +E WI Y++GVDGIS+ LV+LTTFLTP LS+WK+I + + + I L Sbjct: 64 HMQFVERVPWIKSLGFQYYVGVDGISLFLVLLTTFLTPIAQLSTWKAIDKKVKLFNIVIL 123 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++++ ++G F+SLD+ LFY+F+E LIPM+++IG+WGG R++A KFFLYTF GS+FML Sbjct: 124 LMQTGMLGVFISLDVFLFYVFWELQLIPMYLMIGIWGGPNRVFATMKFFLYTFAGSVFML 183 Query: 180 FAIVVMCW--EKKTSS-IIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 AI+ + + K T + +D+ + + P +Q W+++AFF +FAIK+PM+PFHTWLP Sbjct: 184 VAIMALYFLHHKYTGTYTMDMVQLMQQPLPHHLQLWLFLAFFIAFAIKVPMWPFHTWLPW 243 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+APTAGSV LAG++LKMG YG +RF LP+FP + FA ++ LS+I I Y + V+M Sbjct: 244 AHVEAPTAGSVILAGVLLKMGTYGFLRFNLPMFPDMTHAFAVLVIVLSIIGIFYGAFVAM 303 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 VQ DIKKL+AYSS++H+GY +G+F+ ++GVEG++ QM++HG+ + ALF VG++Y+R Sbjct: 304 VQPDIKKLVAYSSVSHLGYSMLGMFALTQTGVEGSILQMVNHGISTGALFLVVGIVYERR 363 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 HTR I YGGL + +P +A M+FT++++ +PGT+GF+GEF++++ F + ++ + Sbjct: 364 HTRLISEYGGLAYLVPAFAAFFMIFTLSSIAVPGTNGFVGEFMILLGAFMSKPVYGIIVA 423 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 FG + SA+Y L +Y++V F K L D++LRE + P+ V + GIYP Sbjct: 424 FGGLFSAVYMLTMYKRVFFNKVTNPKNLGLTDMNLREWLYLIPLLVFVFWIGIYPQTFLS 483 Query: 475 TFSVPLSSIIENYTLKT 491 V + +++ T Sbjct: 484 KMRVSVEHLLKQVNRTT 500 >gi|326403102|ref|YP_004283183.1| NADH-quinone oxidoreductase subunit M [Acidiphilium multivorum AIU301] gi|325049963|dbj|BAJ80301.1| NADH-quinone oxidoreductase subunit M [Acidiphilium multivorum AIU301] Length = 505 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/490 (42%), Positives = 308/490 (62%), Gaps = 5/490 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFS--SYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MN LS++T+LP G + F+ S R+ +AL S + + ++ + F+ Sbjct: 1 MNFHLLSLMTWLPLAGAVLTYFTGDSANPATARNARWIALWTSLLVLVLAVVMVVGFNPS 60 Query: 59 RSSFQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 FQ ++ WI Y Y +GVDGIS+ V L+ LTP +L+SW+ R+YM A Sbjct: 61 VHGFQFVDSAEWIPAYGIGYRMGVDGISLFFVALSALLTPVAVLASWRE-SRRVRDYMAA 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL+LE+M IG F +LD LLFYIFFE LIPM++IIGVWGG RI+AA KFFL+T GS+ Sbjct: 120 FLLLETMTIGMFSALDFLLFYIFFEGVLIPMYLIIGVWGGERRIHAAVKFFLFTLAGSLP 179 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML A+V M T+ ++ L + P + Q W+++AF SF +K ++P HTWLP+A+ Sbjct: 180 MLLALVWMWHHAGTTDMVQLMHTAIAP-TTQDWLFVAFLLSFGVKAAVWPMHTWLPDAYG 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +AP G++ LA ++ KMG YG +RF LP+ P A+ YF P +F L +I I+Y S ++ QT Sbjct: 239 EAPLPGTIMLAAVLSKMGAYGFLRFSLPMLPQATAYFEPFMFALGIIGIVYISFAALAQT 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIK++IAYSS+AHMG + +GIF+ +G+EGA+FQM+SHGLV +ALF CVG++ R H+ Sbjct: 299 DIKRMIAYSSVAHMGLIVVGIFTVTVAGIEGALFQMVSHGLVIAALFLCVGILLARGHSL 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 + GGL MP YA +M+F MAN+GLPGTSGF+GE LV++ Q + VA+L G+ Sbjct: 359 RLDQLGGLASRMPVYATFLMLFVMANVGLPGTSGFVGEILVMIGAIQANFWVALLVGSGM 418 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +LS +Y L + R+V+F ++ + D+ RE M+ P+AVL + G P + F Sbjct: 419 ILSVMYMLVMIRRVLFDKARSVANAVMADIGPREWLMLAPLAVLVIVLGFVPGGLTHIFD 478 Query: 478 VPLSSIIENY 487 + ++ + Sbjct: 479 GAVQDLVHAH 488 >gi|86359324|ref|YP_471216.1| NADH-ubiquinone oxidoreductase chain M protein [Rhizobium etli CFN 42] gi|86283426|gb|ABC92489.1| NADH-ubiquinone oxidoreductase chain M protein [Rhizobium etli CFN 42] Length = 491 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/473 (43%), Positives = 304/473 (64%), Gaps = 7/473 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M LP LS++ F P G V++F R VALG++ ++ + + + FD Sbjct: 1 MGLPLLSLIVFTPAAGAAVLMFLRSDAAVRW----VALGVTVLDLALCIAMLAGFDTTTH 56 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q E W+ F +Y LG+DGIS L V LT L C+L+SW +I +E+M++ L Sbjct: 57 AMQFTETRQWVPAFGINYALGIDGISALFVFLTALLGSTCVLASWVAIDRKVKEFMVSLL 116 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +E++++G F +LD+ LFY+F+EA LIPM++IIGVWGG R+YAA+KFFLYT GS+ L Sbjct: 117 AMEALMLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGDGRVYAAFKFFLYTLAGSVLFL 176 Query: 180 FAIVVMCWEK-KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 I+V+ + +T I+ L A PF +Q W++ AF +FA+K+PM P HTWLP+AHVQ Sbjct: 177 VGIIVLYFNGGETFDILALTA-QDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPHAHVQ 235 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGS+ LAG++LKMG YG +RF LP+ P AS YF+ ++ LS +AI+Y L+++ Q D Sbjct: 236 APTAGSIILAGVLLKMGAYGFLRFSLPMLPDASVYFSTLMLSLSALAIVYGGLLALAQDD 295 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSSI+HMG+VT+G+F+ G+EG + QM +HG+ + ALF VG+IY+R HTR Sbjct: 296 LKKLVAYSSISHMGFVTMGLFALNLRGLEGGILQMFNHGVTTGALFLFVGLIYERTHTRS 355 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG++ P Y + +F +++M LPGT+ F+GE LV+ F + V A G + Sbjct: 356 IADYGGMMKAAPVYTAFLALFILSSMALPGTNSFVGELLVLSGGFSANLAVGAAAVLGAL 415 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 L A Y L +Y KV G + +++D++ RE + + V ++ G+YP P Sbjct: 416 LGAAYLLGMYGKVALGPASVSARFKIRDVNAREIAAILSLTVFVLWVGLYPKP 468 >gi|14272169|emb|CAC39484.1| NADH dehydrogenase subunit 4 [Bazzania trilobata] Length = 418 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 203/403 (50%), Positives = 278/403 (68%), Gaps = 3/403 (0%) Query: 69 HWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 W+ Y ++++G+DGIS+ V+LTTFLTP CIL S++ +EYMI+F + ES I Sbjct: 3 RWLPYPNINFYIGIDGISLFFVILTTFLTPICILVGLHSVKSYKKEYMISFFICESFPIA 62 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMC 186 SLD+L+FY+F E+ LIPMF+IIGVWG +R I AAY+FFLYT GS+FML AI+ + Sbjct: 63 VSRSLDLLIFYVFPESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLMGSLFMLLAILFIF 122 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ T+ + + ++F Q +WIAFF SF++K+PM P H WLP AHV+APTAGSV Sbjct: 123 FQTGTTD-LQILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIWLPEAHVEAPTAGSVI 181 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 AGI+ K+G YG +RF +P+FP A+ YF P I+ S+IAIIY SL ++ Q D+KK+IAYS Sbjct: 182 SAGILSKLGTYGFLRFSIPMFPEATLYFTPFIYAPSVIAIIYTSLTTIRQIDLKKIIAYS 241 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 +AHM +VTIG+FS G+EG++ MLSHG VSSA F C G +YDR TR + YGGLV Sbjct: 242 PVAHMNFVTIGMFSLNIQGIEGSILLMLSHGPVSSAPFLCAGALYDRHKTRIVKYYGGLV 301 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP ++ + + FT ANM LPGTS FIGEFL+++ Q ++ VA LA+ G++L A YSLW Sbjct: 302 STMPIFSTIFLFFTPANMSLPGTSSFIGEFLILVGAIQRNSLVAALAALGMILGAAYSLW 361 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 LY +VVFG K + + DL+ RE + P ++ G+YP Sbjct: 362 LYNRVVFGNFKPNFLLKFSDLNRREVLIFLPFIAGVIWMGVYP 404 >gi|289065166|ref|YP_003434218.1| NADH dehydrogenase subunit 4 [Chattonella marina] gi|288871878|dbj|BAI70565.1| NADH dehydrogenase subunit 4 [Chattonella marina] Length = 492 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 224/478 (46%), Positives = 318/478 (66%), Gaps = 13/478 (2%) Query: 14 FLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID 72 FLG F++ L+ S G + F L +S F+ SL +W FD+ + FQ + + W Sbjct: 16 FLGSFIVALWPSKYQQGMKIF---GLTLSFFVFVCSLLLWVWFDQSTAKFQFVVNFPWFS 72 Query: 73 YF---CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAF 129 F C++ GVDGIS+ L++LTT L P CIL SW SIQ+ +EY++ FL++E+ +I F Sbjct: 73 SFNINCTF--GVDGISLFLILLTTLLFPLCILGSWYSIQKRIKEYLLCFLLMEAFLICVF 130 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 LD+LLFYIFFE LIPMFV+IG+WG ER I AAY FFLYT FGS+FML AI+ + + Sbjct: 131 CVLDLLLFYIFFEGVLIPMFVLIGIWGSRERKIRAAYLFFLYTLFGSLFMLLAILYIFVK 190 Query: 189 KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 T++ L S F Q +W+AFF SF K+PM PFH WLP AHV+APT GSV LA Sbjct: 191 TGTTNYEILLTTSFSSFE-QKVLWLAFFASFGTKVPMVPFHIWLPEAHVEAPTPGSVILA 249 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+G YG +RF LPLFP AS YF P+++ ++ + +IY S ++ Q+D+K++IAYSS+ Sbjct: 250 GLLLKLGTYGFLRFSLPLFPEASFYFTPLVYTMATLGVIYTSFTAIRQSDLKRIIAYSSV 309 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 AHM V +G+FS G+EG++ Q LSHG VSSALF C+G++YDR HTR + Y GLVH Sbjct: 310 AHMNLVMMGLFSFNLPGLEGSLLQSLSHGFVSSALFLCIGILYDRYHTRLVKYYSGLVHV 369 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 MP ++++ FTMAN+GLPGTS F+GEFL++ ++Q + TV +L G+VL YSLWLY Sbjct: 370 MPLSMIILLFFTMANIGLPGTSSFVGEFLILAGIYQTNTTVTLLGGTGMVLGGGYSLWLY 429 Query: 429 RKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 ++ +G K + + K D+ E V+P+ + T+ G+YP D+ + ++ ++ Sbjct: 430 NRLAYGNLKTQYLGMTKFSDIKKNEFFSVFPLIIGTLVMGLYPEIFLDSMHMSINQLL 487 >gi|268678792|ref|YP_003303223.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sulfurospirillum deleyianum DSM 6946] gi|268616823|gb|ACZ11188.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sulfurospirillum deleyianum DSM 6946] Length = 508 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 208/463 (44%), Positives = 304/463 (65%), Gaps = 8/463 (1%) Query: 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISI 86 + S + +S I F+ S+ +W FD + +Q +E+Y +I Y SY+LGVDGIS+ Sbjct: 22 VAKESIRAYGISVSAIEFVLSVILWMGFDSANAGYQFVEFYAFIPSYGMSYYLGVDGISL 81 Query: 87 LLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLI 146 LV+L+TF+T +++ SI+++ + +I+ L LE ++G FL LD++ FY F+E SL+ Sbjct: 82 FLVILSTFITMIALIA--LSIEKDVKNLIISVLFLEMTMVGVFLILDVIWFYAFWELSLV 139 Query: 147 PMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS----- 201 PM IIG WGG +R+YAA KFFLYTF GS+ ML I+ M + ++ I +A+ Sbjct: 140 PMLYIIGGWGGEKRMYAAIKFFLYTFAGSVLMLVGILYMGFLYYEATGIWSFALPDWHLL 199 Query: 202 KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIR 261 + PF+ Q W++ AFF FAIK+PMFPFHTWLP AH QAPT GS+ LA ++LKMG YG +R Sbjct: 200 QVPFTTQLWLFGAFFLGFAIKVPMFPFHTWLPYAHGQAPTIGSIILAAVLLKMGSYGFVR 259 Query: 262 FLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSG 321 F LPLFP AS YF + + +I +IYA++++ Q D+K++IAYSSI+HMG V +G F+ Sbjct: 260 FSLPLFPDASVYFLIPVAIICVIMVIYAAMIAYAQDDMKQVIAYSSISHMGIVILGTFAM 319 Query: 322 MKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTM 381 G+ G++F MLSHG+VS ALF VGVIYDR HT+ + +GGL MPR+A + + M Sbjct: 320 NAEGITGSIFLMLSHGIVSGALFMLVGVIYDRRHTKLMSQFGGLAQVMPRFATIYGIMLM 379 Query: 382 ANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV 441 A++GLP T GF+GEFL +M ++ S + + A G++L A+Y L LY+K FG E+ Sbjct: 380 ASVGLPLTIGFVGEFLSLMGFYRVSWVITLFAGTGIILGAVYMLVLYKKSFFGAVVHEEN 439 Query: 442 QQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 + LKDLS +E + P+ L V G+YP P+ T + + ++ Sbjct: 440 RGLKDLSAKELTALIPLVALVVALGVYPKPLLSTIDMSVQKML 482 >gi|58578612|ref|YP_203302.1| NADH dehydrogenase subunit 4 [Rhizopus oryzae] gi|57338999|gb|AAW49469.1| NADH dehydrogenase subunit 4 [Rhizopus oryzae] Length = 475 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 203/477 (42%), Positives = 313/477 (65%), Gaps = 16/477 (3%) Query: 13 PFLGVFVILFSSYLGCGRRSFF--GVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 P LGVF ++ S G SF VAL S + F+ SL +W+ FD + FQ + + Sbjct: 9 PILGVFGVILS-----GENSFLQKKVALASSLLTFVLSLVLWAGFDSNYNGFQFVSSFPT 63 Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 + +GVDGIS+ V+LTTF+ P CIL+SW+S++ + ++IAFLVLE+++I F+ Sbjct: 64 VT--TQEVVGVDGISLFFVLLTTFIIPICILASWESVKTGIKYFLIAFLVLETLLIAVFV 121 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 LD+LLFYI FE+ LIPMF+IIG+WG ER I+AAY+FFLYT GS+FML AI+V+ +E Sbjct: 122 VLDLLLFYICFESVLIPMFLIIGIWGARERKIHAAYQFFLYTLLGSLFMLLAILVIYFEV 181 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 ++ + A++ + Q +W+ FF SFA+K+PM PFH WLP AHV+A AGS+ LAG Sbjct: 182 GSTDY-QVLAVADISETRQKILWLGFFLSFAVKVPMIPFHIWLPEAHVEANLAGSIILAG 240 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+ GYG +R+ + + P AS +F P+++ L++I+IIY+S ++ Q D+KK+IAYSS+ Sbjct: 241 ILLKLAGYGFLRYSIAILPDASVFFTPLVYSLAVISIIYSSFTTLRQVDLKKIIAYSSVG 300 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HM +G+FS G+EG++ ML+HG+VS ALF CV ++YDR HTR + Y GL +M Sbjct: 301 HMNITLLGLFSNTIQGIEGSLILMLAHGVVSPALFICVVILYDRYHTRLLKYYRGLTQHM 360 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P ++++ +FT+ N+ +P ++ F+GEF+ + FQ + + VL G++LSA Y +WLY Sbjct: 361 PVWSIMFFLFTLGNIAVPLSANFVGEFMTLTGAFQQNPVLTVLGGLGMILSAAYGIWLYN 420 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + FG ++ + + + D++ RE + P+ L G++P + F P+ + N Sbjct: 421 RTAFG-AQSKYLVPMGDINRREFMTLLPLLFLMFVMGLFP----NLFLEPMHLAVSN 472 >gi|11466578|ref|NP_066468.1| NADH dehydrogenase subunit 4 [Rhodomonas salina] gi|10444165|gb|AAG17739.1|AF288090_15 NADH dehydrogenase subunit 4 [Rhodomonas salina] Length = 483 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/426 (47%), Positives = 289/426 (67%), Gaps = 3/426 (0%) Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ +E+ + +F + +GVDGISI ++LTTFL P C+L W S ++N +EY + FL Sbjct: 59 KFQFVEWLELLIFFNFNLFIGVDGISIFFILLTTFLIPICLLVEWFSKKKNIKEYYVCFL 118 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFM 178 ++ +I F LD+L+FYIFFE+ LIPMF++IG++G R I AAY+FFLYT GS+ M Sbjct: 119 LINIFLIVVFSVLDILIFYIFFESILIPMFLVIGIFGSKTRKIKAAYQFFLYTLLGSVLM 178 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L +I ++ +E ++ L ++ KF Q +W+AFF SFAIKIPMFP H WLP AHV+ Sbjct: 179 LLSIFLIFFEAGSTDFQILLSV-KFSEKKQLLLWLAFFISFAIKIPMFPLHIWLPEAHVE 237 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAG++LKMG YG +RF L FP+AS +F P+IF LSL+A++Y SL ++ Q D Sbjct: 238 APTAGSVILAGVLLKMGAYGFVRFSLTFFPIASVFFCPLIFVLSLLAVLYTSLTTLRQVD 297 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK+IAYSS+AHMG VTIGIFS G+EG+ M+SHG VSSALF VG++Y++ H+R Sbjct: 298 LKKIIAYSSVAHMGLVTIGIFSFNLYGLEGSFLMMISHGFVSSALFLLVGMLYEKHHSRL 357 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+ MP Y + F++AN+G PGTS F EFL+++ FQ + VA +S G+V Sbjct: 358 IKYYGGIAQIMPLYTFFFLFFSVANLGFPGTSSFCAEFLILLGAFQVNTFVATFSSLGMV 417 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 SA Y LWL +++FG + V DL ++ +++P++ T+F G+YP D Sbjct: 418 FSAAYCLWLSNRLLFGQLRVYYVSSYCDLQKKDFAILFPLSFFTLFLGVYPEIFLDYIHA 477 Query: 479 PLSSII 484 +S++I Sbjct: 478 SISNLI 483 >gi|189184493|ref|YP_001938278.1| NADH dehydrogenase subunit M [Orientia tsutsugamushi str. Ikeda] gi|189181264|dbj|BAG41044.1| NADH dehydrogenase I chain M [Orientia tsutsugamushi str. Ikeda] Length = 499 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 223/487 (45%), Positives = 320/487 (65%), Gaps = 6/487 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILF---SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 ++P LS+ LP + ++L S+Y F +AL S + + ++++ FD Sbjct: 8 DIPILSVCISLPLSALIILLLMRLSNYFNKLVYVKF-IALLSSVLTLLCTIYLLVQFDNT 66 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 ++Q +E Y +YH+G+DGISI + LT LT I+ S ++Q+ + ++ Sbjct: 67 AHTYQFVELYSIFKLIGLNYHVGIDGISIFFIALTALLTLLSIVISIFTVQKKLEDNLLC 126 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 FL++ES+VIGAF S+++LLF++FFEASL P+F++IG+WG S RIYAA KFFLY+F GS+F Sbjct: 127 FLLIESLVIGAFSSMNLLLFFMFFEASLFPIFLLIGIWGSSNRIYAALKFFLYSFVGSVF 186 Query: 178 MLFAIVVMCWEKKTSSIIDLYA-MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L AI+ + T I +LY M KF S+Q +W++ F +FAIKIPM P H+WLP+AH Sbjct: 187 FLVAIIYIHTYTGTLEIAELYDLMPKFDISVQMLLWLSIFVAFAIKIPMLPLHSWLPDAH 246 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT GSV LAGI+LK+GG+G +R LP+ P ASQ F+ + S+ AIIY S+++ Q Sbjct: 247 VEAPTGGSVMLAGILLKLGGFGLLRICLPMLPAASQKFSSIAMIFSVAAIIYFSIIAFQQ 306 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 DIKK IAYSSIAHMGYVT+GIFS G++GA+FQMLSHGL+SSALF +G++YDR HT Sbjct: 307 IDIKKAIAYSSIAHMGYVTVGIFSLNTYGIQGAIFQMLSHGLISSALFMIIGILYDRTHT 366 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R+I YGGL M + A + M + ++G+PGTSGFIGEFLV++ S + A G Sbjct: 367 REIRLYGGLAVKMNKLASIFMAAVLGSIGVPGTSGFIGEFLVLLGAITASPLIGSFAILG 426 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 V+L ALY L LYR+++ G ++V QL D+SL E+ V P+ V G+YP + + Sbjct: 427 VLLGALYMLSLYRRIMLGEITNQRVYQLNDISLSEKVAVLPLIVAMFIIGVYPKFVLNIL 486 Query: 477 SVPLSSI 483 +P ++ Sbjct: 487 LIPAKNL 493 >gi|296136694|ref|YP_003643936.1| hypothetical protein Tint_2256 [Thiomonas intermedia K12] gi|294340849|emb|CAZ89244.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M) (NDH-1, chain M) [Thiomonas sp. 3As] gi|295796816|gb|ADG31606.1| hypothetical protein Tint_2256 [Thiomonas intermedia K12] Length = 494 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 214/486 (44%), Positives = 323/486 (66%), Gaps = 6/486 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 +LP LS+ ++P ++LF + + +G S I+F+ +L + + FD ++ Sbjct: 3 SLPLLSLSIWIPIAFGVLLLFVQGEQRAAAARWLALIG-SLISFLITLPLITGFDNAQAG 61 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E WI F +Y LG+DG+S+ V LT +T I+S+W+ I++ Y+ AFL+ Sbjct: 62 MQFVESVPWIRPFNINYALGIDGVSLWFVPLTALMTVIVIISAWEVIKDRVSLYLGAFLI 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L ++IG F + D LLFY+FFEA+LIPM++IIG+WGG R+YAA+KFFLYT GS+ ML Sbjct: 122 LSGLMIGVFAATDALLFYVFFEATLIPMYLIIGIWGGPRRVYAAFKFFLYTLAGSLLMLV 181 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ + + S I + + Q +++IAFF +FA+KIPM+P HTWLP+AHV+AP Sbjct: 182 ALIYLYLQSGGSFDIANWYHVPLSMTAQIFIFIAFFFAFAVKIPMWPVHTWLPDAHVEAP 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LA IMLK+G YG IRF LP+ P AS APV+ LSLIA+IY V++VQ D+K Sbjct: 242 TGGSVILAAIMLKLGAYGFIRFSLPMLPDASHALAPVMIALSLIAVIYIGFVALVQADMK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KL+AYSSIAHMG+VT+G F GV+G + QM+SHG +S A+F +GV+YDR+HTR I Sbjct: 302 KLVAYSSIAHMGFVTLGFFLFSDLGVQGGLVQMISHGFISGAMFLTIGVLYDRMHTRQIA 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 YGG+ + MP++A + ++F MAN GLPGTSGF+GE++VI++ + + + +LA+ ++L+ Sbjct: 362 DYGGVTNTMPKFAALAVLFGMANAGLPGTSGFVGEWMVILAAVKFNFWIGLLAATTLILA 421 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LW+ ++V FG + V LKD+ RE M+ + ++ G+YP F+ P+ Sbjct: 422 ASYTLWMIKRVYFGPVGNDHVAALKDIGAREFFMLAVLVGAVLWMGVYP----KFFTDPM 477 Query: 481 SSIIEN 486 + +++ Sbjct: 478 QASVQH 483 >gi|326910744|gb|AEA11190.1| NADH dehydrogenase subunit 4 [Selaginella moellendorffii] gi|327176870|gb|AEA29877.1| NADH dehydrogenase subunit 4 [Selaginella moellendorffii] Length = 505 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 210/470 (44%), Positives = 301/470 (64%), Gaps = 5/470 (1%) Query: 31 RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLV 89 R + + L S F+ SL W F + FQ +E W+ +Y +G+DG+S+ V Sbjct: 35 RFVYRIGLCTSLFTFLCSLLFWIRFHASTADFQAVEAIRWLPDSDAYIVIGIDGLSLFFV 94 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 VLTTFL P C L W SI + +EY I LV ES++I F LD+LLFY+FFE+ LIP+F Sbjct: 95 VLTTFLIPTCFLVGWSSIPQR-KEYTIVLLVSESILIAVFCMLDLLLFYVFFESVLIPLF 153 Query: 150 VIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ 208 ++IG+WG ER I AAY+FFLYT GS+FML AI+++ T+ + L + ++ Q Sbjct: 154 LLIGIWGSRERKIKAAYQFFLYTLLGSVFMLLAILIIFSHTGTTDVPILLTI-EYGERRQ 212 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 +W++FF SF+ K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF + + P Sbjct: 213 LLLWMSFFASFSGKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGLLRFNISMCP 272 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 +A+ YF P+I+ L+LIAI+Y SL ++ Q D+K+ IAYSS+AHM T+G+FS G+EG Sbjct: 273 VATLYFTPLIYGLTLIAIVYTSLTTLRQIDLKRNIAYSSVAHMNLATLGMFSLNIEGIEG 332 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 +++ MLSHGLVSSALF CV +YDR TR + YGGLV MP + + FT+ANM LPG Sbjct: 333 SLYLMLSHGLVSSALFLCVAGLYDRCKTRLLTYYGGLVRTMPILSAFFLFFTLANMSLPG 392 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGV-VLSALYSLWLYRKVVFGVSKCEKVQQLKDL 447 TS FIGEFLV + VF ++++A + G+ ++ A YSLWLY +V G K + + + D+ Sbjct: 393 TSSFIGEFLVFVGVFARNHSIAGMGGVGIMIIGAAYSLWLYTRVACGQLKPQTLGRCTDV 452 Query: 448 SLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSV 497 RE + P ++ G+YP + L+++++ + S+ V Sbjct: 453 QRREAFIYLPFIAGVIWMGVYPDVYLECLHASLTTVVQQGAFELPRSEDV 502 >gi|319761774|ref|YP_004125711.1| proton-translocating NADH-quinone oxidoreductase, chain m [Alicycliphilus denitrificans BC] gi|330826554|ref|YP_004389857.1| proton-translocating NADH-quinone oxidoreductase subunit M [Alicycliphilus denitrificans K601] gi|317116335|gb|ADU98823.1| proton-translocating NADH-quinone oxidoreductase, chain M [Alicycliphilus denitrificans BC] gi|329311926|gb|AEB86341.1| proton-translocating NADH-quinone oxidoreductase, chain M [Alicycliphilus denitrificans K601] Length = 491 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 198/435 (45%), Positives = 298/435 (68%), Gaps = 5/435 (1%) Query: 55 FDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD G ++ Q +E W+ F Y HLGVDGIS+ V LT F+T +++SW+SI E + Sbjct: 52 FDTGTAAMQFVEKAPWVARFNMYYHLGVDGISMWFVPLTAFITVIVVIASWESITERVYQ 111 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 YM AFL+L ++IG F +LD +LFY+FFEA+LIPM++IIG+WGG +IYAA+KFFLYT Sbjct: 112 YMAAFLILSGLMIGVFSALDGMLFYVFFEATLIPMYLIIGMWGGPNKIYAAFKFFLYTLL 171 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF--SIQYWMWIAFFCSFAIKIPMFPFHTW 231 GS+ L A + + ++ D+ A + P + Q ++ A F +FA+K+PM+P HTW Sbjct: 172 GSLLTLVAFIYLY--NQSGGSFDIAAWHRLPLGSTAQTLLFFALFAAFAVKVPMWPVHTW 229 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+ HV+APT GS LA IMLK+G YG +RF LP+ P A+ +A ++ LSLIA+IY L Sbjct: 230 LPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSLPIAPDAAHEWAWLMITLSLIAVIYVGL 289 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++VQ D+KKL+AYSS+AHMG+VT+G F GV G + QM++HG VS A+F C+GV+Y Sbjct: 290 VAIVQKDMKKLVAYSSVAHMGFVTLGFFIFNDLGVSGGLAQMIAHGFVSGAMFLCIGVLY 349 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+H+R I YGG+V+ MP++A ++F+MAN GLP T+GFIGE++VI++ + + + + Sbjct: 350 DRVHSRQIADYGGVVNTMPKFAAFALLFSMANCGLPATAGFIGEWMVIIASVRFNFWIGL 409 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 A+ ++L A YSLW+Y++V G + V+ + D++ RE ++ +A+ ++ GIYP P Sbjct: 410 GAALALILGASYSLWMYKRVYLGPVVNDNVRGMSDINAREFLVLGVLAIAVLYMGIYPKP 469 Query: 472 IRDTFSVPLSSIIEN 486 D ++ ++ + Sbjct: 470 FTDVMDASVTELLRH 484 >gi|313768518|ref|YP_004062193.1| NADH dehydrogenase subunit 4 [Gracilariopsis andersonii] gi|312844645|gb|ADR03209.1| NADH dehydrogenase subunit 4 [Gracilariopsis andersonii] Length = 491 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 224/455 (49%), Positives = 306/455 (67%), Gaps = 7/455 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH-LGVDGISILLVVLTTF 94 +AL S + F+FSL +W FD S FQ + W Y+ LG+DGIS+ ++LTT Sbjct: 38 IALNTSCVTFLFSLILWIQFDSHTSLFQFSVTFDWFPSINLYYTLGIDGISLFFILLTTL 97 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 LT CIL SW S++ +EY+I FL+LE +I F LD+L FYIFFE+ LIPMF+I+G+ Sbjct: 98 LTIICILVSWSSVKFLVKEYLICFLLLEFFLIQVFSVLDLLWFYIFFESVLIPMFLIVGI 157 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWM 211 WG ER I AAY+FFLYT GS+ ML A++ + ++ ++ DL + + FS Q Sbjct: 158 WGSRERKIRAAYQFFLYTLVGSLLMLIALLTIYFQVGST---DLQLIGYYNFSEIKQIIF 214 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 W+AFF SFA+KIPM PFH WL AH +APTAGSV LAGI+LKMGGYG +RF +PLFP A Sbjct: 215 WLAFFASFAVKIPMIPFHIWLHEAHAEAPTAGSVILAGILLKMGGYGFLRFSIPLFPEAC 274 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 YF P++F LS+IAI+YASL ++ Q D+KK+IAYSS++HMG+VTIGIFS G+EG++ Sbjct: 275 IYFTPLVFTLSIIAILYASLTTLRQVDLKKIIAYSSVSHMGFVTIGIFSLNLHGIEGSIL 334 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 MLSHGLVSSALF CVG++YDR TR + Y GL+ MP + V + FT AN+G PGTS Sbjct: 335 LMLSHGLVSSALFLCVGILYDRHKTRILKYYSGLMQVMPIFGVFFLFFTFANLGFPGTSS 394 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 FIGE LV++ FQ + + AS G+V+ A YS+WL+ ++ FG K + +D+S RE Sbjct: 395 FIGELLVLIGAFQLNRILTFFASIGMVMGAAYSIWLFNRISFGTLKIQYFGLFQDVSRRE 454 Query: 452 RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 ++ P+ + ++ G+YP+ + S+IE Sbjct: 455 FWILLPLTFIILWMGVYPISFLSEMHFTVLSLIEQ 489 >gi|150375776|ref|YP_001312372.1| proton-translocating NADH-quinone oxidoreductase subunit M [Sinorhizobium medicae WSM419] gi|150030323|gb|ABR62439.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium medicae WSM419] Length = 491 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/473 (43%), Positives = 306/473 (64%), Gaps = 7/473 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M++P LS++ F+P G V++F R + ALG ++ + + + FD Sbjct: 1 MSIPLLSLIVFVPVAGAAVLVFMRSDDAVRWT----ALGFGIVDLALCIVMLAGFDTTTH 56 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q +E W+ +Y LGVDGIS L + LT L +L+SW +I +E+M++ L Sbjct: 57 EMQFVESRPWVAALGIAYALGVDGISALFLFLTALLGLISVLASWVAIDRKVKEFMVSLL 116 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++++++G F +LD+ LFY+F+EA LIPM++IIGVWGG R+YAA+KFFLYT GSI L Sbjct: 117 VMQALMLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFL 176 Query: 180 FAIVVMCWEK-KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++V+ ++ +T I+ L A PF +Q W++ AF +FA+K+PM P HTWLP+AHVQ Sbjct: 177 IGVIVLYFQGGETFDILALTA-QDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQ 235 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGS+ LAG++LKMG YG +RF LP+ P AS Y++ ++ LS +AI+Y L+++ Q D Sbjct: 236 APTAGSIILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLLLSALAIVYGGLLALAQDD 295 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSSI+HMG+VT+GIF+ G+EG++ QM +HG+ + ALF VG+IY+R HTR Sbjct: 296 LKKLVAYSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRS 355 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGGL+ P Y + +FT+++M LPGT+ F+GE LV+ F + A G + Sbjct: 356 IANYGGLMKAAPIYTAFLALFTLSSMALPGTNAFVGELLVLSGGFAANLAAGTAAVVGAL 415 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 LSA Y L +Y KV G ++ D++ RE + P+A+ ++ G+YP P Sbjct: 416 LSAAYLLGMYGKVALGPPSVSAKYKIHDVNGREMAAILPLAIFVLWVGLYPRP 468 >gi|321268757|gb|ADW79206.1| NADH dehydrogenase subunit 4 [Cyanophora paradoxa] Length = 483 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 214/460 (46%), Positives = 317/460 (68%), Gaps = 9/460 (1%) Query: 13 PFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI- 71 P +G +I F +R+ V + + I S+ +W +F+ Q + +WI Sbjct: 11 PIIGSILIFFLK----SQRNIKIVGITTTLITLFLSIILWIIFNNLFIYPQHVITINWIP 66 Query: 72 -DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 + F LGVDGIS+ ++L+T + P C+++S + I++ RE+ I FL+LES++I F Sbjct: 67 IENFQP-KLGVDGISLFFIILSTAIIPICLMASLQGIKKQLREFFICFLLLESLLILVFS 125 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 S D+ LFY+FFE LIPMF+IIGVWG ER I A Y FFLYT GS+ ML I+ + ++ Sbjct: 126 SFDLFLFYLFFEGVLIPMFLIIGVWGSRERKIRAGYYFFLYTLIGSVLMLLGIIWIYYKT 185 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 T+ + LY + KF + Q +W+AFF SFA+K+PM PFH WLP AHV++PTAGS+ LAG Sbjct: 186 GTTDLTILYQI-KFDETEQLLLWLAFFSSFAVKVPMIPFHIWLPEAHVESPTAGSLMLAG 244 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+G YG +RF +PLFP+AS YF P+I+ +SLI IIY SL ++ Q D+KK+IAYSS+A Sbjct: 245 VLLKLGTYGFLRFSIPLFPMASIYFTPLIYTMSLIGIIYGSLTTLRQIDLKKIIAYSSVA 304 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HM +VT+G+F +EG++ M+SHG+VS ALF VG++YDR HTR ++ Y GLVH M Sbjct: 305 HMSFVTLGLFGLNVQSIEGSIMLMISHGIVSPALFLLVGILYDRYHTRLLYYYSGLVHIM 364 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P +A+ + FTMAN+ LPGTS F+GEFL ++ V+QN+N+VA++A+ G++L A Y+LWL Sbjct: 365 PIFALFFVFFTMANISLPGTSSFVGEFLSLLGVYQNNNSVAIIATLGIILGAAYALWLCN 424 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +++FGV K + + + D++ RE ++ +++ T+F GIYP Sbjct: 425 RIIFGVIKIDYIGYIGDITKREFILLLILSLATIFIGIYP 464 >gi|264677210|ref|YP_003277116.1| proton-translocating NADH-quinone [Comamonas testosteroni CNB-2] gi|299530754|ref|ZP_07044169.1| proton-translocating NADH-quinone oxidoreductase, chain M [Comamonas testosteroni S44] gi|262207722|gb|ACY31820.1| proton-translocating NADH-quinone [Comamonas testosteroni CNB-2] gi|298721270|gb|EFI62212.1| proton-translocating NADH-quinone oxidoreductase, chain M [Comamonas testosteroni S44] Length = 491 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/448 (45%), Positives = 306/448 (68%), Gaps = 7/448 (1%) Query: 43 INFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCIL 101 I F ++ + + FD ++ Q +E WI+ F YHLGVDGIS+ V LT F+T ++ Sbjct: 40 IGFAVTIPLVTGFDTTTANMQFVENALWIERFNIHYHLGVDGISMWFVPLTAFITVIVVI 99 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI 161 +SW +I E +YM AFL+L ++IG F SLD +LFY+FFEA+LIPM++IIG+WGG +I Sbjct: 100 ASWTNITERVNQYMAAFLILSGLMIGVFASLDGMLFYVFFEATLIPMYLIIGIWGGPNKI 159 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS-SIIDLYAMSKFPFS--IQYWMWIAFFCS 218 YAA+KFFLYT GS+ L A++ + + S I+D + K P S Q ++ AFF + Sbjct: 160 YAAFKFFLYTLMGSLLTLVALIYLYTQSGGSFEILDWH---KLPLSGTAQTLIFFAFFAA 216 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 FA+K+PMFP HTWLP+ HV+APT GS LA IMLK+G YG +RF LP+ P A+ ++ ++ Sbjct: 217 FAVKVPMFPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSLPIAPDAAHEWSGLM 276 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSLIA+IY +V++VQ D+KKL+AYSS+AHMG+VT+G F G+ G + QM++HG Sbjct: 277 ITLSLIAVIYVGVVALVQKDMKKLVAYSSVAHMGFVTLGFFMFNNLGISGGLVQMIAHGF 336 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 VS A+F C+GV+YDR+H+R+I AYGG+V+ MP++A ++F MAN GLP T+GF+GE++V Sbjct: 337 VSGAMFLCIGVLYDRVHSREIAAYGGVVNTMPKFAAFALLFAMANCGLPATAGFVGEWMV 396 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 I+ Q + + + A+ ++ A Y+LW+Y++V G + V +LKD++ RE ++ + Sbjct: 397 ILGAVQYNFWIGLGAATALIFGAAYTLWMYKRVYLGAVANDHVAELKDINCREFLVLGLL 456 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 A + G+YP P D V ++ +I++ Sbjct: 457 AAAVLVMGLYPKPFTDVMDVSVAELIKH 484 >gi|110816048|ref|YP_684379.1| NADH dehydrogenase subunit 4 [Oltmannsiellopsis viridis] gi|86450259|gb|ABC96338.1| NADH dehydrogenase subunit 4 [Oltmannsiellopsis viridis] Length = 510 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 220/466 (47%), Positives = 305/466 (65%), Gaps = 18/466 (3%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMI-----------EYYHWIDYFCSYHLGVDGI 84 +AL IS INF+ S+++W F+ + FQ + E + + + GVDGI Sbjct: 40 LALNISLINFLASIWLWVSFNNSTAKFQFLSTLGTSSLLSTESHVYSQLNINPTFGVDGI 99 Query: 85 SILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEAS 144 S+L ++LTTFL P CIL W SI +EY IAFLVLES+VI F SLD+LLFY+FFE+ Sbjct: 100 SVLFILLTTFLIPICILVGWTSINTYVKEYCIAFLVLESLVIAVFTSLDLLLFYVFFESV 159 Query: 145 LIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF 203 LIPM++IIGVWG ++ +I A+YK FLYT GSIFML I+++ ++ T+ + ++F Sbjct: 160 LIPMYIIIGVWGSADTKISASYKLFLYTLAGSIFMLVGILMIYFQTGTTDY-HILLTTEF 218 Query: 204 PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFL 263 S Q +W++FF +FA+K+PM PFH WLP AH APTAGSV LAGI+LK+G Y +RF Sbjct: 219 SESRQVLLWLSFFLAFAVKVPMVPFHIWLPAAHTAAPTAGSVILAGILLKLGTYAFLRFS 278 Query: 264 LPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMK 323 +PLFP AS YF P+++ LS++AIIY SL ++ Q D+KK+IAYSS+ HMG VT+G+ S Sbjct: 279 IPLFPYASIYFTPLVYTLSVLAIIYTSLSTIRQVDLKKVIAYSSVGHMGVVTLGLLSLNA 338 Query: 324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMAN 383 G+EG+MF L HG+VS ALF CVG++YDR TR I YGGLV++MP + +V+TMAN Sbjct: 339 EGIEGSMFLQLGHGIVSPALFICVGILYDRHKTRIIRYYGGLVNSMPIFCTFFLVYTMAN 398 Query: 384 MGLPGTS-GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ 442 +GLPG S F GEF V + F N+ A L +F ++LS Y+LW Y +V +G K Sbjct: 399 IGLPGLSPSFCGEFAVFLGTFLNNTLAAFLGAFSMILSGGYALWAYGRVAYGAPKQISAP 458 Query: 443 QLK----DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 L D++ RE M+ + V+ + IYP + T V +++ I Sbjct: 459 HLNGTTCDVNRREFVMLASLGVVNMLLAIYPEAVYQTMHVSIANTI 504 >gi|226939468|ref|YP_002794541.1| NADH dehydrogenase subunit M [Laribacter hongkongensis HLHK9] gi|226714394|gb|ACO73532.1| NuoM [Laribacter hongkongensis HLHK9] Length = 499 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 205/458 (44%), Positives = 302/458 (65%), Gaps = 7/458 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 +AL S F+ SL ++ F Q +E WI +Y LGVDGIS+ ++L +F Sbjct: 35 IALAGSLAGFLVSLPLYFNFQPLHGGMQFVELAPWIASLNINYALGVDGISVWFIILNSF 94 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 T +L+ W+ IQ +Y AFL++ ++ GAF +LD +LFY+FFEA LIPM+++IGV Sbjct: 95 TTLLVVLAGWQVIQTRVAQYFAAFLIMSGLINGAFAALDAVLFYVFFEAMLIPMYLVIGV 154 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 WGG R+YA+ KFFLYT GS+ ML + + + ++ S I + + Q +++A Sbjct: 155 WGGPRRVYASIKFFLYTLLGSLLMLVSFIYLYFQVGGSFEITRFQAVPLGLTAQILLFVA 214 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF SFA+K+PMFP HTWLP+AHV+APT GS+ LA I LK+G YG +RFLLP+ P A++ Sbjct: 215 FFMSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFLLPIVPDAAREL 274 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG------VEG 328 + ++ LSL+A++Y LV++VQTD+KKL+AYSSIAHMG+VT+G F +G VEG Sbjct: 275 SSLMIVLSLVAVVYIGLVALVQTDMKKLVAYSSIAHMGFVTLGFFMFTDAGALNQWAVEG 334 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 A+ QM+SHG VS+A+F C+GV+YDR+H+R+I YGG+V+ MP YA + F MAN GLP Sbjct: 335 ALVQMISHGFVSAAMFMCIGVLYDRMHSRNIADYGGVVNKMPVYAAFALFFAMANAGLPA 394 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 TSGF+GEF+VIM Q + A A+ ++ A Y+LW+Y++VVFG + V +L+D++ Sbjct: 395 TSGFVGEFMVIMGAVQVNFWYAFFAATTLIFGAAYTLWMYKRVVFGETGNAHVDKLQDVN 454 Query: 449 LRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 RE ++ +AV + G+YP D ++ ++ + Sbjct: 455 GREFLILGILAVAVLGMGLYPQMFVDIMHTSVNDLLSH 492 >gi|242310566|ref|ZP_04809721.1| NADH dehydrogenase subunit M [Helicobacter pullorum MIT 98-5489] gi|239522964|gb|EEQ62830.1| NADH dehydrogenase subunit M [Helicobacter pullorum MIT 98-5489] Length = 512 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 218/490 (44%), Positives = 316/490 (64%), Gaps = 23/490 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L+++ PF G L + + R++ G+ +G+ I I SLF+W FDK +Q I Sbjct: 5 LTLLILFPFFGA---LLAIGIKENLRAY-GIIIGV--IELILSLFLWIFFDKNVDGYQFI 58 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLT--PFCILSSWKSIQENFREYMIAFLVLE 122 + + F +Y +GVDGIS+ L++L+ ++ F L+ Q ++ +I+ L LE Sbjct: 59 VSFPLVANFGVNYLVGVDGISLFLIILSALISFLGFVYLNE----QREIKKLVISLLCLE 114 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S++IG F +LD++LFYIF+E SL+PM IIG WG RIYAA KFFLYTFFGS+ ML I Sbjct: 115 SIMIGVFCALDVILFYIFWELSLVPMLYIIGAWGSGNRIYAAIKFFLYTFFGSLIMLVGI 174 Query: 183 VVMCW---EKK---TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + + + E T S++D Y++ P IQ W+++AFFC A+K+PMFPFHTWLP AH Sbjct: 175 LFLAYYYFEVSGVWTFSLLDWYSLEAIPKDIQIWLFLAFFCGLAVKVPMFPFHTWLPYAH 234 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 QAPT GSV LA ++LKMG YG +RF LPLFP AS + L+LI I+Y ++V+ Q Sbjct: 235 GQAPTIGSVVLAAVLLKMGTYGFVRFSLPLFPDASVALLVPMAILALIMIVYGAMVAFAQ 294 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+K++IAYSSI+HMG + IGIF+ GV G++F MLSHG++S ALF VGVIYDR HT Sbjct: 295 EDMKQVIAYSSISHMGVIMIGIFALNLEGVTGSVFFMLSHGVISGALFMLVGVIYDRRHT 354 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 + I +GGL MP YAV+ + MA+ GLP T GF+GEFL ++ F+ S A +A Sbjct: 355 KLISEFGGLAKVMPNYAVIFGIMMMASAGLPLTMGFVGEFLSLLGFFEVSPIAAGIAGLS 414 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 +++ A+Y L LY++V +G + ++ ++LKDL RE + P+ V+ ++ G+YP PI + Sbjct: 415 IIVGAIYMLHLYKRVFYGQLQNDENRKLKDLDSRELSALLPLVVIVIWLGVYPKPILE-- 472 Query: 477 SVPLSSIIEN 486 P++ +EN Sbjct: 473 --PINKGVEN 480 >gi|239816471|ref|YP_002945381.1| proton-translocating NADH-quinone oxidoreductase, chain M [Variovorax paradoxus S110] gi|239803048|gb|ACS20115.1| proton-translocating NADH-quinone oxidoreductase, chain M [Variovorax paradoxus S110] Length = 491 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/459 (44%), Positives = 317/459 (69%), Gaps = 5/459 (1%) Query: 31 RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLV 89 R VAL + ++F+ ++ +++ F+ G ++ Q +E WI F +YHLGVDG+S+ LV Sbjct: 28 RGVRWVALVGAIVSFLVTVPLYTGFENGTAAMQFVEKGSWIARFNVNYHLGVDGLSLWLV 87 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 +LT+F+T ++S+W+ I E +YM AFL+L +IG F +LD +LFY+FFEA+LIPM+ Sbjct: 88 LLTSFITVVVVISAWEVITERVNQYMGAFLILSGFMIGVFAALDGILFYVFFEATLIPMY 147 Query: 150 VIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF--SI 207 +IIG+WGG +IYAA+KFF+YT GS+ ML A++ + K+ D+ + K P + Sbjct: 148 LIIGIWGGPNKIYAAFKFFIYTLLGSLLMLVALIYLY--NKSGGSFDILSWHKLPLGSTA 205 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q +++ AFF +FA+K+PM+P HTWLP+ HV+APT GS LA IMLK+G YG +RF +P+ Sbjct: 206 QTFLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIA 265 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P AS +A ++ LSLIA+IY LV++VQ D+KKL+AYSS+AHMG+VT+G F + GV Sbjct: 266 PDASHEWAWLMIALSLIAVIYVGLVALVQEDMKKLVAYSSVAHMGFVTLGFFIFNELGVS 325 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 G + QM++HG VS A+F +GV+YDR+H+R I YGG+V+ MP++A ++F MAN GLP Sbjct: 326 GGIVQMIAHGFVSGAMFLGIGVLYDRVHSRQIADYGGVVNTMPKFAAFALLFAMANCGLP 385 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDL 447 GT+GF+GE++VI+ +++ + A+ ++ A Y+LW+Y++V G + V++L D+ Sbjct: 386 GTAGFVGEWMVILGAVKSNFWIGAGAATALIFGAAYTLWMYKRVYLGPVGNDHVKELTDI 445 Query: 448 SLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + RE M+ +A+ ++ GI+P P D ++ ++ + Sbjct: 446 NAREFLMLSLLAIAVLWMGIHPKPFTDVMDASVTELLRH 484 >gi|209427651|ref|YP_002274325.1| NADH dehydrogenase subunit 4 [Blastocladiella emersonii] gi|82492279|gb|ABB78018.1| NADH dehydrogenase subunit 4 [Blastocladiella emersonii] Length = 489 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 220/493 (44%), Positives = 316/493 (64%), Gaps = 23/493 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCG---RRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 L+ + LP +G F+I YLG + +AL + INFI S+ +W FD+ + F Sbjct: 2 LTFLIVLPLIGAFII----YLGESIFSNVTRMKIALLTAGINFIVSIGLWIQFDENTAQF 57 Query: 63 QMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLT-PFCILSSWKSIQENFREYMIA 117 Q +E W F C LGVDGIS+ V+LTTFLT P + +K E+ Y+IA Sbjct: 58 QFVE--DWGSLFNGGLCHLILGVDGISLFFVILTTFLTIPILLTPPYKG--ESPIAYLIA 113 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSI 176 L+LESM+I F+ LD+LLFYI FE LIPMF+IIG+WG ER I AAY+FFLYT GS+ Sbjct: 114 ILILESMLIAVFVVLDLLLFYICFETVLIPMFLIIGIWGSRERKILAAYQFFLYTLLGSL 173 Query: 177 FMLFAIVVMCWEKKTSS---IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 FML I+++ ++ T+ ++ K F+ + +W+ FF SFA+K+PM P H WLP Sbjct: 174 FMLLGILIIYYQTGTTDYQYLLGSVISEKIVFTRENLLWVTFFLSFAVKVPMVPVHIWLP 233 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 AH +APT GS+ LAGI+LK+ GYG IR+ L LFP A+ F P + L+ I IIY+SL Sbjct: 234 EAHTEAPTGGSMLLAGILLKLSGYGFIRYSLVLFPNANTNFTPFVITLATIGIIYSSLAC 293 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + Q DIKK++AYSSI+HM +GIFS G+EG++F ML HG+VS+ALFFCVG+IYDR Sbjct: 294 LRQIDIKKIVAYSSISHMNTAILGIFSNTVIGIEGSIFMMLGHGIVSTALFFCVGLIYDR 353 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 TR + Y GL MP +A+ + ++NM +PGT GF+GEFL + +F+++ +A++A Sbjct: 354 TGTRILKYYRGLSVTMPLFALFFFILGLSNMAVPGTVGFVGEFLSLYGIFKSNILIAIVA 413 Query: 414 SFGVVLSALYSLWLYRKVVFG-VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 S ++L A Y++WL +++FG VSK + DL+ RE +++ A L++ FG++P I Sbjct: 414 SLSIILGAAYNIWLTNRLLFGQVSKF--IDSYNDLTRREFVILFTFAFLSILFGLFPNII 471 Query: 473 RDTFSVPLSSIIE 485 + + +SS+I Sbjct: 472 LEVLHLSVSSVIN 484 >gi|320353001|ref|YP_004194340.1| NADH dehydrogenase subunit M [Desulfobulbus propionicus DSM 2032] gi|320121503|gb|ADW17049.1| NADH dehydrogenase subunit M [Desulfobulbus propionicus DSM 2032] Length = 505 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 211/486 (43%), Positives = 307/486 (63%), Gaps = 6/486 (1%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS + FLP G V+LF R AL ++++ I S+ + FD + +Q Sbjct: 11 PLLSFLIFLPLAGATVLLFFHGASFARIW----ALCVTSLTAICSVPLLIGFDPASAKYQ 66 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E + WI F +Y +G+DGISILLV+LTT + PFC+L+SWK IQ+ +M L +E Sbjct: 67 FAEAHAWIPRFHINYIVGMDGISILLVLLTTCIMPFCVLASWKYIQKRVTPFMFCLLAME 126 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + +IG F++LD +LFYIF+E LIPM+++I +WGG + YA+ KFFLYT GS+ +L AI Sbjct: 127 TSMIGVFVALDFVLFYIFWEFMLIPMYLLIAIWGGPRKAYASIKFFLYTLAGSVLLLVAI 186 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + + + K S I + + Q +++AFF +FAIK+PMFPFHTWLP AHV+APTA Sbjct: 187 IAL-YLKSGSFFIPEMMWKPYSLTFQLLVFLAFFLAFAIKVPMFPFHTWLPAAHVEAPTA 245 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LA ++LKMG YG +RF LP+ P A+ A I +LS+ IIY ++ Q D+KKL Sbjct: 246 GSVILASVLLKMGTYGLLRFCLPITPDATLLLAEPILWLSIAGIIYGGFTALAQQDMKKL 305 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+ HMG+VT+GIF GVEGAM QM++HG+ + ALF CVG+IY+R H+R++ A Sbjct: 306 IAYSSVGHMGFVTLGIFVLNTRGVEGAMLQMINHGVTTGALFLCVGMIYERTHSRELVAA 365 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G+ MP + + F++++ G PGT+ FIGEFLV+ F+ + +A+ A G VL+A Sbjct: 366 TGVGKYMPWFVTFLTFFSLSSFGFPGTNSFIGEFLVLAGTFERNTFIALAAIPGAVLAAA 425 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y L + +KVV+G + L DL +RE ++ P + + G+ P P D +S Sbjct: 426 YMLRMLQKVVWGGTDNPDQSHLGDLGIREIVVLTPFLLFVFWIGLGPQPFIDLMHTSVSQ 485 Query: 483 IIENYT 488 ++E + Sbjct: 486 LLEQFN 491 >gi|324309720|gb|ADY18501.1| NADH dehydrogenase subunit 4 [Phaeodactylum tricornutum] Length = 493 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 210/447 (46%), Positives = 296/447 (66%), Gaps = 7/447 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW-IDYFCSYHLGVDGISILLVVLTTF 94 VAL ++ ++F L ++ F KG +FQ + Y W + + LGVDGISI ++LTT Sbjct: 39 VALNVTGLSFTGCLLLFGFFHKGTGAFQYVLQYPWFLGLNLNLTLGVDGISIFFLLLTTL 98 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CIL+SW S++ + +E++I FLVLE +IG F +LD++ FYIFFE+ LIPMF+IIG+ Sbjct: 99 LIPLCILASWNSVKSSLKEFLITFLVLEFFLIGVFCTLDLVFFYIFFESVLIPMFLIIGI 158 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG ER + A+Y FFLYT FGS+ ML +++ + W+ T+ L A S F Q ++W Sbjct: 159 WGSRERKVLASYYFFLYTLFGSVLMLLSVLYIYWQVGTTDYQLLLAFS-FSEQEQKFLWF 217 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA KIPM P H WLP AHV+APTAGSV LAG++LK+G YG IRF LPLFP AS + Sbjct: 218 TFFLAFASKIPMIPVHLWLPEAHVEAPTAGSVILAGVLLKLGTYGFIRFSLPLFPQASFF 277 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P+++ +S ++Y S ++ QTD K++IAY+SIAHM V +G+FS G+EGA+FQ Sbjct: 278 FTPLVYAISASGVVYTSFTAIRQTDFKRIIAYTSIAHMNLVILGVFSFNTIGIEGAIFQS 337 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHG V+SALF +GV+YDR TR + YGGL MP YA + + FTMAN+ PGTS F+ Sbjct: 338 LSHGFVASALFLIIGVVYDRYRTRIVRYYGGLTSVMPIYATIFLFFTMANISFPGTSSFV 397 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL++ F+ + + +L++ +++ YSLWL+ ++V+G K + D+S RE Sbjct: 398 GEFLILTGSFKVNTIITILSAMSIIIGGAYSLWLFNRIVYGNLKTQHTNTFLDISAREFL 457 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPL 480 + P+ T GIYP D F P+ Sbjct: 458 IFLPLISGTFIMGIYP----DIFLNPI 480 >gi|154149339|ref|YP_001405801.1| NADH dehydrogenase subunit M [Campylobacter hominis ATCC BAA-381] gi|153805348|gb|ABS52355.1| NADH-quinone oxidoreductase chain m (nadh dehydrogenasei, chain m) (ndh-1, chain m) [Campylobacter hominis ATCC BAA-381] Length = 507 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 219/495 (44%), Positives = 317/495 (64%), Gaps = 17/495 (3%) Query: 5 FLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 FLS+V F P L G+F I +G+ I + I S+ +W F +F+ Sbjct: 4 FLSLVIFFPLLAGIFGIFIEE----KNIKIYGICAAI--VELILSIILWFNFGFLEGNFK 57 Query: 64 MIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 IE+ +I + +Y +G+DGIS+ L++L+TF+T ++S +I+E + +I+ L LE Sbjct: 58 FIEFIPFIKNVGINYFIGIDGISLFLIILSTFMTLIALIS--LTIKERIKHLVISILALE 115 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +IG F +LD +LFYIF+E SLIPM IIG WG +RIYAA KFF+YTFFGS+FMLF + Sbjct: 116 MTMIGVFAALDGILFYIFWELSLIPMLYIIGAWGSGKRIYAAVKFFIYTFFGSVFMLFGL 175 Query: 183 VVM---CWEKKTS---SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + M C++ S +I+D + + PF+ Q W+++AF +FAIK P+FPFHTWLP AH Sbjct: 176 IFMAYLCYKTNGSFSFNILD-WQRLEIPFNYQIWLFLAFSIAFAIKTPLFPFHTWLPYAH 234 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 QAPT GSV LA ++LKMG YG +RF LP+FP AS YFA ++ +++I IIY S ++ Q Sbjct: 235 GQAPTIGSVLLAAVLLKMGTYGFVRFSLPIFPDASLYFADMMCVIAIIMIIYTSFIAFAQ 294 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+K++IAYSSIAHMG + +GIFS G+ GA+F MLSHG+VS LF VG IY+R HT Sbjct: 295 KDLKQVIAYSSIAHMGVIMLGIFSFTIEGISGAVFLMLSHGIVSGGLFMLVGFIYERKHT 354 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 + + +GGL MP YA V + ++GLP T GF+GEFL ++ +F+ A L FG Sbjct: 355 KLMSEFGGLAKVMPFYAFTFCVVLLGSIGLPLTIGFVGEFLSLLGMFKYEPIYAFLGGFG 414 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 +++ A+YS+ LY+K FG E+ ++LKDL++ E + PI +L + G+YP P+ Sbjct: 415 IIMGAIYSMNLYKKTFFGPVIHEENRKLKDLNVMENFAIVPICILVIVLGVYPKPVLSQI 474 Query: 477 SVPLSSIIENYTLKT 491 V S I+ + K+ Sbjct: 475 DVSSSVIVNQMSQKS 489 >gi|190893211|ref|YP_001979753.1| NADH-ubiquinone oxidoreductase, chain M [Rhizobium etli CIAT 652] gi|190698490|gb|ACE92575.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli CIAT 652] Length = 491 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/473 (42%), Positives = 303/473 (64%), Gaps = 7/473 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M LP LS++ F P G V++F R +ALG++ ++ + + + FD Sbjct: 1 MGLPLLSLIVFTPAAGAAVLMFLRSDAAVRW----MALGVTVLDLALCIAMLAGFDTTTH 56 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q E W+ +Y LG+DGIS L V LT L C+L+SW +I +E+M++ L Sbjct: 57 AMQFTETRPWVPALGITYALGIDGISALFVFLTALLGSTCVLASWVAIDRKVKEFMVSLL 116 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +E++++G F +LD+ LFY+F+EA LIPM++IIG+WGG R+YAA+KFFLYT GS+ L Sbjct: 117 AMEALMLGVFCALDLFLFYVFWEAMLIPMYLIIGIWGGDGRVYAAFKFFLYTLAGSVLFL 176 Query: 180 FAIVVMCWEK-KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++V+ + +T I+ L A PF +Q W++ AF +FA+K+PM P HTWLP+AHVQ Sbjct: 177 VGVIVLYFNGGETFDILALTA-QDLPFRVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQ 235 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGS+ LAG++LKMG YG +RF LP+ P AS Y++ ++ LS +AI+Y L+++ Q D Sbjct: 236 APTAGSIILAGVLLKMGAYGFLRFSLPMLPDASVYYSTLMLSLSALAIVYGGLLALAQDD 295 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKL+AYSSI+HMG+VT+GIF+ G+EG + QM +HG+ + ALF VG+IY+R HTR Sbjct: 296 LKKLVAYSSISHMGFVTMGIFALNLRGLEGGILQMFNHGVTTGALFLFVGLIYERTHTRS 355 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGGL+ P + +F +++M LPGT+ F+GE LV+ F + V A G + Sbjct: 356 ITDYGGLMKAAPVCTTFLALFILSSMALPGTNSFVGELLVLSGGFAANLAVGAAAVLGAL 415 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 L A Y L +Y KV G + +++D++ RE + P+ V ++ G+YP P Sbjct: 416 LGAAYLLGMYGKVALGPASVNARFKIRDVNAREIAAILPLTVFVLWVGLYPKP 468 >gi|157816274|ref|YP_001492845.1| NADH dehydrogenase subunit 4 [Tilletia indica] gi|187373152|ref|YP_001876495.1| ND4 [Tilletia walkeri] gi|115361467|gb|ABI95833.1| NADH dehydrogenase subunit 4 [Tilletia indica] gi|144926007|gb|ABP03941.1| ND4 [Tilletia walkeri] Length = 457 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 205/452 (45%), Positives = 300/452 (66%), Gaps = 5/452 (1%) Query: 35 GVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTF 94 +AL S INFI S+ +W FD +Q + I FC G+DGIS+ V+LTTF Sbjct: 3 NIALLTSLINFIVSIILWGEFDSSTREYQFVSSVREIS-FCYLRFGIDGISLYFVLLTTF 61 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 + P CILS+W +IQ N + ++I FL+LE+++I F D+LLFYIFFE+ LIP+F+I+G+ Sbjct: 62 IIPICILSNWDNIQHNMKFFLINFLLLETLLIAVFTVCDLLLFYIFFESVLIPLFLIVGI 121 Query: 155 WGGSE-RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WGGS RI AA+ FLYT FGS+FML + + + + T+ + ++S+ +Q +WI Sbjct: 122 WGGSSTRIRAAFLLFLYTLFGSLFMLLSFLYIYYNIGTTDF-QIVSLSEINPMVQKILWI 180 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 F S AIK P++P H WL AH +AP GSV LAG++LK+ YG +R L+P+FP A+ Y Sbjct: 181 GIFISMAIKTPIWPLHLWLFRAHAEAPVGGSVILAGLILKLRLYGYLRILIPMFPDATSY 240 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F+P++ ++LI+IIYASL ++ QTD K L+AYSS+AHMG V +G+FS G+EG++ Sbjct: 241 FSPLVQTMALISIIYASLSTVRQTDFKALVAYSSVAHMGVVVLGVFSNTIQGIEGSILLG 300 Query: 334 LSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 ++HGLVS ALF V GV+YDR HTR I Y GL MP ++++ +FT+ N G+P ++ + Sbjct: 301 IAHGLVSPALFILVGGVLYDRYHTRVIMYYRGLTTYMPIFSIMFFLFTIRNTGIPLSANW 360 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 +GE + +M FQ +N +A + S G+VLSA YS+WLY +V FG S + + KDL+ RE Sbjct: 361 VGEMMSLMGAFQKNNIIASICSIGIVLSARYSIWLYNRVRFG-SWSKYLGYTKDLNRREF 419 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 ++ P+ + T FGI+P I + V +S +I Sbjct: 420 MLLLPLLITTFLFGIFPNRILNDIHVSVSHLI 451 >gi|319794656|ref|YP_004156296.1| proton-translocating NADH-quinone oxidoreductase, chain m [Variovorax paradoxus EPS] gi|315597119|gb|ADU38185.1| proton-translocating NADH-quinone oxidoreductase, chain M [Variovorax paradoxus EPS] Length = 492 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 200/454 (44%), Positives = 314/454 (69%), Gaps = 5/454 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 VAL + ++F+ ++ +++ F G ++ Q +E WI F +YH+G+DG+S+ +V+LT+F Sbjct: 33 VALVGAIVSFLVTVPLFTRFQNGTAAMQFVEKTSWISRFNVNYHIGLDGLSLWMVLLTSF 92 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T ++S+W+ I E +YM AFL+L +IG F +LD +LFY+FFEA+LIPM++IIG+ Sbjct: 93 ITVVVVISAWEVITERVNQYMGAFLILSGFMIGVFSALDGILFYVFFEATLIPMYLIIGI 152 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF--SIQYWMW 212 WGG +IYAA+KFFLYT GS+ ML A++ + K+ D+ A K P + Q +++ Sbjct: 153 WGGPNKIYAAFKFFLYTLLGSLLMLVALIFLY--NKSGGSFDILAWHKLPLGSTAQTFLF 210 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 AFF +FA+K+PM+P HTWLP+ HV+APT GS LA IMLK+G YG +RF +P+ P AS Sbjct: 211 FAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDASH 270 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 +A ++ LSLIA+IY LV++VQ D+KKL+AYSS+AHMG+VT+G F + GV G + Q Sbjct: 271 EWAWLMIALSLIAVIYVGLVALVQQDMKKLVAYSSVAHMGFVTLGFFIFNELGVSGGIVQ 330 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 M++HG VS A+F +GV+YDR+H+R I YGG+V+ MP++A ++F MAN GLPGT+GF Sbjct: 331 MIAHGFVSGAMFLGIGVLYDRVHSRQIADYGGVVNTMPKFAAFALLFAMANCGLPGTAGF 390 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 +GE++VI+ + + + A+ ++ A Y+LW+Y++V G + V++L D++ RE Sbjct: 391 VGEWMVILGAVKANFWIGAGAATALIFGAAYTLWMYKRVYLGPVGNDHVKELTDINAREF 450 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 M+ +A+ ++ G+YP P D ++ ++ + Sbjct: 451 LMLSLLAIAVLWMGLYPKPFTDAMDASVTELLRH 484 >gi|308275214|emb|CBX31811.1| NADH-quinone oxidoreductase chain 13 [uncultured Desulfobacterium sp.] Length = 498 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 212/488 (43%), Positives = 318/488 (65%), Gaps = 11/488 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 +N P LS++ F P G FV+ R V+L + F SL ++ FD + Sbjct: 9 LNYPILSVLIFTPLAGAFVLFMIRNETVARIWTLLVSLAV----FALSLPLYFNFDHSTT 64 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 ++Q E++ WI Y +Y LG+DGIS+LLV+L+TFL P C+L+SWK I + +E+ L Sbjct: 65 NYQFGEHFAWIPSYNINYTLGIDGISLLLVLLSTFLIPICVLASWKYIDKRVKEFHFCLL 124 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++ S +G F SLD +LFYIF+EA LIPM+++I VWGG E++YA+ KFF+YT GS+F+L Sbjct: 125 LMGSACVGIFSSLDFVLFYIFWEAMLIPMYLLIAVWGGPEKVYASIKFFIYTMVGSVFLL 184 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ + + T SI +L + + F+ Q+W+++AF +FAIK+PM PFHTWLP AHVQA Sbjct: 185 VAMIALYLKVGTFSIPELMTHT-YSFNFQFWVFLAFGIAFAIKVPMAPFHTWLPAAHVQA 243 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LA ++LKMG YG +RF LP+ P AS YFAP I +S+ +I+Y V++ Q+D+ Sbjct: 244 PTAGSVLLASVLLKMGTYGFLRFCLPITPNASIYFAPYILIISICSIVYGGYVALGQSDM 303 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+AHMG+VT+GIF K G+EGA+ QM++HG+ + ALF CVG+IY+R H+R I Sbjct: 304 KKLIAYSSVAHMGFVTLGIFLFNKYGLEGAILQMINHGITTGALFLCVGIIYERSHSRLI 363 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 G+ MP Y F +++M PGT+ F+GE L+++ VF + + L+ GVVL Sbjct: 364 ADNSGIAKIMPIYIGFFGFFCLSSMAFPGTNSFVGELLILLGVFTDHKLIGALSIPGVVL 423 Query: 420 SALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +A Y L L +++ +G +KV+ D+++RE + P+ + ++ G P P + Sbjct: 424 AAAYMLHLLQRISWG----KKVKGHFTDMNIREVIYLTPLVIFVLWIGFSPGPFLNVMHA 479 Query: 479 PLSSIIEN 486 + ++E Sbjct: 480 SVGHLMEQ 487 >gi|57013943|ref|YP_173416.1| NADH dehydrogenase subunit 4 [Nicotiana tabacum] Length = 495 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 210/453 (46%), Positives = 293/453 (64%), Gaps = 3/453 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTF 94 + L S I F++ + FD + Q +E W+ Y +++LG+DGIS+ V+LTTF Sbjct: 40 IGLCASLITFLYPPVLRIQFDPSTAKSQFVESLRWLPYENINFYLGIDGISLFFVILTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CIL W ++ +EY+ AFL+ E ++I F LD+LLFY+ E+ LIPMF+IIGV Sbjct: 100 LIPICILVGWSGMRSYGKEYITAFLIREFIMIAVFCMLDLLLFYVLPESVLIPMFIIIGV 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+ FLYT GS+FML AI+++ + T+ + + ++F Q ++WI Sbjct: 160 WGSRQRKIKAAYQLFLYTLLGSVFMLLAILLILLQTGTTDL-QISLTTEFSERRQIFLWI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 A F SFA+K+PM P H WLP AHV+APTAGSV LAGI LK+G YG +RF +P+FP A+ Sbjct: 219 ASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIALKLGTYGFLRFSIPMFPEATLC 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 P I+ LS IAIIY S ++ Q D+KK+IAYSS+AHM VTIG+FS G+ G++ M Sbjct: 279 STPFIYTLSAIAIIYTSSTTLRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILPM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 SHGLVSSALF CVGV+YDR TR + YGG V MP + + T+ANM PGTS FI Sbjct: 339 SSHGLVSSALFLCVGVLYDRHKTRLVRYYGGSVSTMPNLSTIFFSSTLANMSSPGTSSFI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+++ FQ ++ VA LA+ G++L A YSLWLY + V G K + + + D + RE Sbjct: 399 GEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRAVSGNLKPDFLHKFSDPNGREVS 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V V G++P D +S+++++ Sbjct: 459 IFIPFLVGVVRMGVHPKVFPDRMHTSVSNLVQH 491 >gi|332296558|ref|YP_004438481.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermodesulfobium narugense DSM 14796] gi|332179661|gb|AEE15350.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermodesulfobium narugense DSM 14796] Length = 501 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/454 (44%), Positives = 308/454 (67%), Gaps = 9/454 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 MN P LS+V +P +G ++LF + + AL + I+F SL +W +FDK Sbjct: 1 MNFPILSLVLLIPVIGAILMLFMKNSTLIKST----ALIFALIDFFVSLPLWFLFDKNSH 56 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q +E + WI + Y +GVDGIS+L V+L+T +T + SWK+I + +E+ I L Sbjct: 57 SMQFVEVHPWIPFINAKYAVGVDGISVLFVLLSTLITVISVSVSWKAIDKKVKEFFIMIL 116 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++E+ +IG F+SLD+LLFY F+EA LIPMF++IGVWGG R+YA+ KF L+TF GS+ ML Sbjct: 117 LMETSMIGVFVSLDLLLFYAFWEAMLIPMFLLIGVWGGPNRVYASIKFVLFTFAGSVLML 176 Query: 180 FAIVVMCWEK-KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 +I+V+ + T I++L ++ P ++Q +++IAF +FA+K+PMFP HTWLP+AH + Sbjct: 177 VSILVLYFAGGHTFDILELTKLN-LPVNMQIFLFIAFTLAFAVKVPMFPLHTWLPDAHTE 235 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAG++LK+G YG +RF +P FP A+ F ++ LS++AI+Y + V++ QTD Sbjct: 236 APTAGSVILAGVLLKLGAYGFLRFSMPFFPEATLMFLSLLQVLSVVAIVYGAFVTLKQTD 295 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+LIAYSS++HMG+VT+G+F+ + G+ G + QM++HG+V+ ALF VG+IY+R HTR Sbjct: 296 LKRLIAYSSVSHMGFVTLGLFTLTQIGMLGGILQMINHGIVTGALFCLVGMIYERTHTRQ 355 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGGL +P + + FT+A +GLPGT+ F+GEFL++ F + A G++ Sbjct: 356 IADYGGLKPALPIFILFYTFFTLAAIGLPGTNSFMGEFLILCGAFLRFIPLGAFAVIGII 415 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQL-KDLSLRE 451 L Y +WLY +V +G + EK++ L DL RE Sbjct: 416 LGTTYMIWLYYRVAYG-NLNEKIKDLIYDLGPRE 448 >gi|221068600|ref|ZP_03544705.1| proton-translocating NADH-quinone oxidoreductase, chain M [Comamonas testosteroni KF-1] gi|220713623|gb|EED68991.1| proton-translocating NADH-quinone oxidoreductase, chain M [Comamonas testosteroni KF-1] Length = 491 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 203/448 (45%), Positives = 307/448 (68%), Gaps = 7/448 (1%) Query: 43 INFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCIL 101 I F ++ + + FD ++ Q +E WI+ F YHLGVDGIS+ V LT F+T ++ Sbjct: 40 IGFAVTIPLITGFDTTTANMQFVENALWIERFNIHYHLGVDGISMWFVPLTAFITVIVVI 99 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI 161 +SW +I E +YM AFL+L ++IG F ++D +LFY+FFEA+LIPM++IIG+WGG RI Sbjct: 100 ASWANITERVNQYMGAFLILSGLMIGVFAAMDGMLFYVFFEATLIPMYLIIGIWGGPNRI 159 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS-SIIDLYAMSKFPFS--IQYWMWIAFFCS 218 YAA+KFFLYT GS+ L A++ + + S I+D + K P S Q ++ AFF + Sbjct: 160 YAAFKFFLYTLMGSLLTLVALIYLYTQSGGSFEILDWH---KLPLSGTAQTLIFFAFFAA 216 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 FA+K+PMFP HTWLP+ HV+APT GS LA IMLK+G YG +RF LP+ P A+ ++ ++ Sbjct: 217 FAVKVPMFPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSLPIAPDAAHEWSGLM 276 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSLIA+IY +V++VQ D+KKL+AYSS+AHMG+VT+G F G+ G + QM++HG Sbjct: 277 ITLSLIAVIYVGVVALVQKDMKKLVAYSSVAHMGFVTLGFFMFNSLGIAGGLVQMIAHGF 336 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 VS A+F C+GV+YDR+H+R+I AYGG+V+ MP++A ++F MAN GLP T+GF+GE++V Sbjct: 337 VSGAMFLCIGVLYDRVHSREIAAYGGVVNTMPKFAAFALLFAMANCGLPATAGFVGEWMV 396 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 I+ Q + +++ A+ ++ A Y+LW+Y++V G + V +LKD++ RE ++ + Sbjct: 397 ILGAVQYNFWISLGAATALIFGAAYTLWMYKRVYLGDVANDHVAELKDINCREFLVLGVL 456 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 A + G+YP P D V ++ +I++ Sbjct: 457 AAAVLVMGLYPKPFTDVMDVSVAELIKH 484 >gi|241763300|ref|ZP_04761357.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidovorax delafieldii 2AN] gi|241367575|gb|EER61862.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidovorax delafieldii 2AN] Length = 491 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 208/472 (44%), Positives = 314/472 (66%), Gaps = 9/472 (1%) Query: 26 LGCGR----RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLG 80 L GR RS +AL + I + +L ++ F G ++ Q +E WI+ F YHLG Sbjct: 19 LAVGRDEHARSVRWLALIGAVIGLLVTLPLYEGFQLGSAAMQFVEKSVWIERFNVHYHLG 78 Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIF 140 VDGIS V LT F+T +++SW+SI E +YM AFL+L ++IG F +LD +LFY+F Sbjct: 79 VDGISFWFVPLTAFITVIVVIASWESITERINQYMGAFLILSGLMIGVFSALDGMLFYVF 138 Query: 141 FEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM 200 FEA+LIPM++IIG+WGG +IYAA+KFFLYT GS+ ML A++ + ++ D+ A Sbjct: 139 FEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLLGSLLMLIALIYLY--NQSGGSFDIAAW 196 Query: 201 SKFPF--SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 K P + Q ++ AFF +FA+K+PM+P HTWLP+ HV+APT GS LA IMLK+G YG Sbjct: 197 HKLPLGSTAQTLLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYG 256 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +RF +P+ P A++ +A ++ LSL+A++Y LV+MVQ D+KKL+AYSS+AHMG+VT+G Sbjct: 257 FLRFSMPIAPDAAREWAWLMIVLSLVAVVYVGLVAMVQKDMKKLVAYSSVAHMGFVTLGF 316 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 F GV G + QM++HG VS A+F +GV+YDR+H+R+I AYGG+V+ MP + ++ Sbjct: 317 FIFNDLGVSGGLVQMIAHGFVSGAMFLSIGVLYDRVHSREIAAYGGVVNTMPNFTAFALL 376 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 F MAN GLPGT+GF+GE++VI+ + + V A+ ++L A Y+LW++++V G Sbjct: 377 FAMANCGLPGTAGFVGEWMVILGAVKANFWVGGAAALALILGAAYTLWMFKRVYLGPVAN 436 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 + V+ L D+S RE ++ +A+ + G+YP P D ++ ++++ L Sbjct: 437 DHVKALSDISSREFLVLALLALAVLAMGLYPRPFTDVMDTSVAELLKHVALS 488 >gi|256535772|gb|ACB20504.2| NADH dehydrogenase subunit 4 [Carica papaya] Length = 495 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 212/453 (46%), Positives = 292/453 (64%), Gaps = 3/453 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTF 94 + L S I F++S FD + Q +E W+ Y ++ LG+DGIS+ V+LTTF Sbjct: 40 IGLCASLITFLYSPVPRIQFDPSTAKSQFVESLRWLPYENINFDLGIDGISLFFVILTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CI W ++ +EY+ A L+ E ++I F LD+LLFY+F E+ IPMF+IIGV Sbjct: 100 LIPICISVGWSGMRSYGKEYITASLIREFLMIAVFRMLDLLLFYVFPESVPIPMFIIIGV 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+FFLYT GS+FML AI+++ + T+ + + ++F Q ++WI Sbjct: 160 WGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDL-QISLTTEFSERRQIFLWI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 A F SFA+K+PM P H WLP AHV+APTAGSV LAGI LK+G YG +RF +P+FP A+ Sbjct: 219 ASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLKLGTYGFLRFSIPMFPEATLC 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 P I+ LS IAIIY SL + Q D+KK+IAYSS+AHM VTIG+FS G+ G++ M Sbjct: 279 STPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSIPPM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLV SALF CVGV+YDR TR + YGGLV MP + + T+ANM PGTS FI Sbjct: 339 LSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLSTISFSLTLANMSSPGTSSFI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEF +++ FQ ++ VA LA+ G++L A YSLWLY +VV G K + + + D + RE Sbjct: 399 GEFPILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLHKFSDSNGREVS 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V V G++P D +S+++++ Sbjct: 459 IFIPFLVGVVRMGVHPKVFPDCMHTSVSNLVQH 491 >gi|58579163|ref|YP_197375.1| NADH-quinone oxidoreductase chain M [Ehrlichia ruminantium str. Welgevonden] gi|58417789|emb|CAI26993.1| NADH-quinone oxidoreductase chain M [Ehrlichia ruminantium str. Welgevonden] Length = 463 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 216/454 (47%), Positives = 304/454 (66%), Gaps = 14/454 (3%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 +LF+ FD +Q I + + +GVDG+S+ L++LT+FL C + S ++ Sbjct: 20 TLFIAIKFDYSYKGYQFI-----CNLLHGFSIGVDGLSLPLILLTSFLFLLCTVFSLFNM 74 Query: 108 Q-ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYK 166 + N R ++ L+LE + IG F SLD+++FYIFFE+ LIPMF IIG+WG +RIYA +K Sbjct: 75 KIYNLRTFIALLLLLEGLTIGVFASLDIIMFYIFFESVLIPMFFIIGIWGHEDRIYATFK 134 Query: 167 FFLYTFFGSIFMLFAIV-VMCWEKKTSSIIDL-YAMSKF-PFSIQYWMWIAFFCSFAIKI 223 FLYT GS+ L AI+ + + K S+I L Y + F Q W+W AFF SFAIKI Sbjct: 135 LFLYTLAGSLLFLIAIIYIYLFSDKVSNIEQLSYILPNFLNIKAQKWLWCAFFISFAIKI 194 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 P+ PFHTWLPNAHVQAPT GSV LAGI++K+G Y +RF +P+ P A+ YF+ + LS+ Sbjct: 195 PIVPFHTWLPNAHVQAPTVGSVLLAGILIKVGTYALLRFSIPMLPEANMYFSNFVIILSI 254 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 I +IYASL+S VQ++IKK IAYSSIAHMG+VT GIFS + G+ GA+FQM+SHGL+S+AL Sbjct: 255 IGVIYASLISFVQSNIKKFIAYSSIAHMGFVTAGIFSFNEYGISGAIFQMISHGLISAAL 314 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 FFCVG++YDR HT +I Y GL MP+++++ + FTMA++ LPGTSGF+GEFL I+ VF Sbjct: 315 FFCVGMLYDRNHTLEISKYSGLAKVMPKFSIMFIFFTMASIALPGTSGFVGEFLSILGVF 374 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 S A L + GV+L A+Y L+L +++++G S + + DL+ E ++ +A L + Sbjct: 375 HYSKLFAALIATGVILGAVYMLFLSKEIIWGASNSSLI--VCDLNKNELFILIILATLVL 432 Query: 464 FFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSV 497 FGIYP I LS +E +L+ Y S+ Sbjct: 433 VFGIYPYYILLK---SLSPFMEQLSLRNLYFSSI 463 >gi|206602048|gb|EDZ38530.1| NADH dehydrogenase (quinone), chain M [Leptospirillum sp. Group II '5-way CG'] Length = 500 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 212/486 (43%), Positives = 323/486 (66%), Gaps = 4/486 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 +++P L+ + F P +G ++L + ++ +AL ++ + F+ SL + + G Sbjct: 4 LSVPILTFLIFFPIVGALLLLPFRAIPGSEKTVRVLALVLTCVEFLISLDLVLGMNPGSF 63 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q E + WI + Y LGVDGISI+L+++TTFL P C+L+SWK I E+M+ L Sbjct: 64 RMQFTEDHLWIPFANIHYSLGVDGISIVLIIMTTFLLPMCVLTSWKGISTRVVEFMMTLL 123 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE +++G F + D +LFY+F+E+ LIPM++IIGVWGG R+YA KFFLYT GS+ +L Sbjct: 124 ILEGIMVGVFAATDFVLFYVFWESMLIPMYLIIGVWGGPNRLYATIKFFLYTLAGSLLLL 183 Query: 180 FAIVVMCW-EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 I+ + + T +I+ L + Q + ++A F +FA+K+PMFPFHTWLP+AHV+ Sbjct: 184 LVIISLYFVGGHTFNIVQLMG-QHYSMLFQEFAFVAMFVAFAVKVPMFPFHTWLPDAHVE 242 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LA +MLKMG YG +RF LP+FP AS +F P+IF LSL I++ +L+++ Q D Sbjct: 243 APTAGSVILASVMLKMGAYGFLRFSLPMFPEASHFFTPLIFGLSLAGIVWGALMALAQED 302 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKLIAYSS++HMG VT+GIF G+EGA+ M++HG+ + ALF CVGV+YDR H+R Sbjct: 303 MKKLIAYSSVSHMGIVTLGIFVFNYQGLEGALMGMINHGVTTGALFLCVGVLYDRTHSRQ 362 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + YGG+ MP ++ + M+F+M+++GLPG + FIGEFLV++ F+ + +AVLA+ ++ Sbjct: 363 LSDYGGIAKLMPVFSTMFMIFSMSSLGLPGLNSFIGEFLVLLGTFRQHSALAVLATTVII 422 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L+ALY L+L +V++GV + L DL+ E + P+A L + G+ P PI Sbjct: 423 LAALYMLYLLTRVIWGVYSPRE-WSLPDLNRLEWASLLPLAALVFWIGLEPDPILGLLHA 481 Query: 479 PLSSII 484 +S +I Sbjct: 482 SVSHLI 487 >gi|124515804|gb|EAY57313.1| NADH dehydrogenase (quinone), chain M [Leptospirillum rubarum] Length = 500 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 211/486 (43%), Positives = 323/486 (66%), Gaps = 4/486 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 +++P L+ + F P +G ++L + ++ +AL ++ + F+ SL + + G Sbjct: 4 LSVPILTFLIFFPIVGALLLLPFRAIPGSEKTVRVLALVLTCVEFLISLDLVLGMNPGSF 63 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q E + WI + Y LGVDGISI+L+++TTFL P C+L+SWK I E+M+ L Sbjct: 64 RMQFTEDHLWIPFANIHYSLGVDGISIVLIIMTTFLLPMCVLTSWKGISTRVVEFMMTLL 123 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE +++G F + D +LFY+F+E+ LIPM++IIGVWGG R+YA KFFLYT GS+ +L Sbjct: 124 ILEGIMVGVFAATDFVLFYVFWESMLIPMYLIIGVWGGPNRLYATIKFFLYTLAGSLLLL 183 Query: 180 FAIVVMCW-EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 I+ + + T +I+ L + Q + ++A F +FA+K+PMFPFHTWLP+AHV+ Sbjct: 184 LVIISLYFVGGHTFNIVQLMG-QHYSMLFQEFAFVAMFVAFAVKVPMFPFHTWLPDAHVE 242 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LA +MLKMG YG +RF LP+FP AS +F P+IF LSL I++ +L+++ Q D Sbjct: 243 APTAGSVILASVMLKMGAYGFLRFSLPMFPEASHFFTPLIFGLSLAGIVWGALMALAQED 302 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KKLIAYSS++HMG VT+GIF G+EGA+ M++HG+ + ALF CVGV+YDR H+R Sbjct: 303 MKKLIAYSSVSHMGIVTLGIFVFNYQGLEGALMGMINHGVTTGALFLCVGVLYDRTHSRQ 362 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + YGG+ MP ++ + M+F+M+++GLPG + FIGEFLV++ F+ + +AVLA+ ++ Sbjct: 363 LSDYGGIAKVMPVFSTMFMIFSMSSLGLPGLNSFIGEFLVLLGTFRQHSALAVLATTVII 422 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L+ALY L+L +V++GV + L DL+ E + P+A L + G+ P P+ Sbjct: 423 LAALYMLYLLTRVIWGVYSPRE-WSLPDLNRLEWASLLPLAALVFWIGLEPNPVLGLLHA 481 Query: 479 PLSSII 484 +S +I Sbjct: 482 SVSHLI 487 >gi|57239205|ref|YP_180341.1| NADH-quinone oxidoreductase chain M [Ehrlichia ruminantium str. Welgevonden] gi|58617216|ref|YP_196415.1| NADH-quinone oxidoreductase chain M [Ehrlichia ruminantium str. Gardel] gi|57161284|emb|CAH58205.1| NADH-quinone oxidoreductase chain M [Ehrlichia ruminantium str. Welgevonden] gi|58416828|emb|CAI27941.1| NADH-quinone oxidoreductase chain M [Ehrlichia ruminantium str. Gardel] Length = 486 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 217/461 (47%), Positives = 305/461 (66%), Gaps = 14/461 (3%) Query: 41 STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCI 100 S FI + + FD +Q I + + +GVDG+S+ L++LT+FL C Sbjct: 36 SGATFILNFIIAIKFDYSYKGYQFI-----CNLLHGFSIGVDGLSLPLILLTSFLFLLCT 90 Query: 101 LSSWKSIQ-ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 + S +++ N R ++ L+LE + IG F SLD+++FYIFFE+ LIPMF IIG+WG + Sbjct: 91 VFSLFNMKIYNLRTFIALLLLLEGLTIGVFASLDIIMFYIFFESVLIPMFFIIGIWGHED 150 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSIIDL-YAMSKF-PFSIQYWMWIAFF 216 RIYA +K FLYT GS+ L AI+ + + K S+I L Y + F Q W+W AFF Sbjct: 151 RIYATFKLFLYTLAGSLLFLIAIIYIYLFSDKVSNIEQLSYILPNFLNIKAQKWLWCAFF 210 Query: 217 CSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAP 276 SFAIKIP+ PFHTWLPNAHVQAPT GSV LAGI++K+G Y +RF +P+ P A+ YF+ Sbjct: 211 ISFAIKIPIVPFHTWLPNAHVQAPTVGSVLLAGILIKVGTYALLRFSIPMLPEANMYFSN 270 Query: 277 VIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSH 336 + LS+I +IYASL+S VQ++IKK IAYSSIAHMG+VT GIFS + G+ GA+FQM+SH Sbjct: 271 FVIILSIIGVIYASLISFVQSNIKKFIAYSSIAHMGFVTAGIFSFNEYGISGAIFQMISH 330 Query: 337 GLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEF 396 GL+S+ALFFCVG++YDR HT +I Y GL MP+++++ + FTMA++ LPGTSGF+GEF Sbjct: 331 GLISAALFFCVGMLYDRNHTLEISKYSGLAKVMPKFSIMFIFFTMASIALPGTSGFVGEF 390 Query: 397 LVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 L I+ VF S A L + GV+L A+Y L+L +++++G S + + DL+ E ++ Sbjct: 391 LSILGVFHYSKLFAALIATGVILGAVYMLFLSKEIIWGASNSSLI--VCDLNKNELFILI 448 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSV 497 +A L + FGIYP I LS +E +L+ Y S+ Sbjct: 449 ILATLVLVFGIYPYYILLK---SLSPFMEQLSLRNLYFSSI 486 >gi|209543573|ref|YP_002275802.1| proton-translocating NADH-quinone oxidoreductase subunit M [Gluconacetobacter diazotrophicus PAl 5] gi|209531250|gb|ACI51187.1| proton-translocating NADH-quinone oxidoreductase, chain M [Gluconacetobacter diazotrophicus PAl 5] Length = 502 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 206/471 (43%), Positives = 308/471 (65%), Gaps = 11/471 (2%) Query: 5 FLSIVTFLPFLGVFVILF-----SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 L +VT+LP G IL + G R VAL S I F S+ +W FD Sbjct: 5 LLPLVTYLPLGGALAILLMRGTSEAVEGASRW----VALWTSLIVFGLSVVMWGEFDPSL 60 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 FQ ++ W F SYH GVDGIS+L V+L+TFLTP ++ WK + R+YM+A Sbjct: 61 PGFQFVQQVGWASSFGISYHAGVDGISLLFVLLSTFLTPLAVIGGWKLVTTRVRDYMLAV 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+LE+ ++G F +LD++LFY+F+EA+LIP ++IGVWGG +R++A+ +FFL+TF GS+FM Sbjct: 121 LLLETTLVGLFSALDLVLFYVFYEATLIPGSLMIGVWGGPKRVWASIQFFLFTFGGSLFM 180 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A++ M W ++ I + FP ++Q W+ + F +F +K+P+FP H WLP+A+ + Sbjct: 181 LLALLTM-WNMTGTTDIPTLMQATFPRAMQCWLLLGFVLAFGVKLPLFPLHAWLPDAYTE 239 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT S L+G++ K G YG +RF + +FP A++ FAP I L +IA+IYA++++M QTD Sbjct: 240 APTPTSALLSGVLSKAGAYGLLRFGVLMFPEAARLFAPYILTLGVIAVIYAAIIAMAQTD 299 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K++IAYSS +HMG + +G+F+ G++GA+F MLSHG++ +ALFFCV + R TR Sbjct: 300 MKRVIAYSSFSHMGVIAVGLFTLTPEGIDGAIFTMLSHGVIITALFFCVAAVSWRAETRS 359 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I A+ G+ H MP A + M+F MAN+GLPGT F+GE LV++ S VA LA ++ Sbjct: 360 IDAFSGVAHKMPVLATLAMLFVMANIGLPGTGSFVGELLVMVGAIHVSFWVAFLAGSTMI 419 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L A+Y L LYR+V+FG + V L+DL+ E ++ P A++T++ GI+P Sbjct: 420 LGAVYMLVLYRRVMFGAAGHGVVAMLRDLTGPELAVLVPCALVTLWMGIHP 470 >gi|323649893|ref|YP_004237266.1| NADH dehydrogenase subunit 4 [Ricinus communis] gi|322394273|gb|ADW96030.1| NADH dehydrogenase subunit 4 [Ricinus communis] Length = 495 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 212/453 (46%), Positives = 291/453 (64%), Gaps = 3/453 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTF 94 + L S I F++S + FD + Q +E W+ Y + G+DGIS+ V+LTTF Sbjct: 40 IGLCASLITFLYSPVLRIQFDPSTAKSQFVESLRWLPYENIHFFFGIDGISLFFVILTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CI W ++ +EY+ A L+ E ++I F LD LLFY+ E+ LIPMF+IIGV Sbjct: 100 LIPICISVGWSGMRSYGKEYITASLIREFLMIAVFRMLDPLLFYVLPESVLIPMFIIIGV 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+FFLYT GS+FML AI+++ + T+ + + ++F Q ++WI Sbjct: 160 WGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDL-QISLTTEFSERRQIFLWI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 A F SFA+K+PM P H WLP AHV+APTAGSV LAGI LK+G YG +RF +P+FP A+ Sbjct: 219 ASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLKLGTYGFLRFSIPMFPEATLS 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 P I+ S IAIIY SL + Q D+KK+IAYSS+AHM VTIG+FS G+ G++ M Sbjct: 279 STPFIYTPSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILPM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLVSSALF CVGV+YDR TR + YGGLV MP + + T+ANM PGTS FI Sbjct: 339 LSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLSTIFFSSTLANMSSPGTSSFI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+ + FQ ++ VA LA+ G++L A YSLWLY +VV G K + + + D + RE Sbjct: 399 GEFLISVGAFQKNSVVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLHKFSDSNGREVS 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V V+ G++P D +S+++++ Sbjct: 459 IFIPFLVGVVWMGVHPKVFPDCMHTSVSNLVQH 491 >gi|10945075|emb|CAC14150.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium meliloti] Length = 491 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 202/472 (42%), Positives = 302/472 (63%), Gaps = 5/472 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M++P LS++ F+P G V++F R + ALG I+ + + + FD Sbjct: 1 MSIPLLSLIVFVPVAGAAVLMFMRSDDAVRWT----ALGFGIIDLALCVVMLAGFDTTTH 56 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q E W+ +Y LGVDGIS L + LT L+ +L+SW +I +E+M++ L Sbjct: 57 EMQFTESRPWVPALGITYALGVDGISALFLFLTALLSLISVLASWVAIDRKVKEFMVSLL 116 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++++++G F +LD+ LFY+F+EA LIPM++IIGVWGG R+YAA+KFFLYT GSI L Sbjct: 117 VMQALMLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFL 176 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++V+ ++ + I PF +Q W++ AF +FA+K+PM P HTWLP+AHVQA Sbjct: 177 IGVIVLYFQGGETFDILALTGQDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQA 236 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGS+ LAG++LKMG YG +RF LP+ P AS Y++ ++ LS +AI+Y L+++ Q D+ Sbjct: 237 PTAGSIILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLALSALAIVYGGLLALAQDDL 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKL+AYSSI+HMG+VT+GIF+ G+EG++ QM +HG+ + ALF VG+IY+R HTR I Sbjct: 297 KKLVAYSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSI 356 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGGL+ P Y + +FT+++M LPGT+ F+GE LV+ F + A G +L Sbjct: 357 ANYGGLMKAAPVYTAFLALFTLSSMALPGTNAFVGELLVLSGGFAANLAAGAAAVVGALL 416 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 SA Y L +Y KV G ++ D++ RE + P+A+ ++ G+YP P Sbjct: 417 SAAYLLGMYGKVALGPPSVSAKYEIHDVNGREMAAILPLAIFVLWVGLYPRP 468 >gi|16263289|ref|NP_436082.1| NuoM2 NADH-ubiquinone/plastoquinone (complex I) oxidoreductase [Sinorhizobium meliloti 1021] gi|14523966|gb|AAK65494.1| NuoM2 NADH:quinone oxidoreductase subunit 4 (chain M) [Sinorhizobium meliloti 1021] Length = 491 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/485 (41%), Positives = 307/485 (63%), Gaps = 5/485 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M++P LS++ F+P G V++F R + ALG ++ + + + FD Sbjct: 1 MSIPLLSLIVFVPVAGAAVLMFMRSDDAVRWT----ALGFGIVDLALCVVMLAGFDTTTH 56 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q E W+ +Y LGVDGIS L + LT L+ +L+SW +I +E+M++ L Sbjct: 57 EMQFTESRPWVPALGITYALGVDGISALFLFLTALLSLISVLASWVAIDRKVKEFMVSLL 116 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++++++G F +LD+ LFY+F+EA LIPM++IIGVWGG R+YAA+KFFLYT GSI L Sbjct: 117 VMQALMLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFL 176 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++V+ ++ + I PF +Q W++ AF +FA+K+PM P HTWLP+AHVQA Sbjct: 177 IGVIVLYFQGGETFDILALTGQDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQA 236 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGS+ LAG++LKMG YG +RF LP+ P AS Y++ ++ LS +AI+Y L+++ Q D+ Sbjct: 237 PTAGSIILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLALSALAIVYGGLLALAQDDL 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKL+AYSSI+HMG+VT+GIF+ G+EG++ QM +HG+ + ALF VG+IY+R HTR I Sbjct: 297 KKLVAYSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSI 356 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGGL+ P Y + +FT+++M LPGT+ F+GE LV+ F + A G +L Sbjct: 357 ANYGGLMKAAPVYTAFLALFTLSSMALPGTNAFVGELLVLSGGFAANLAAGAAAVVGALL 416 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y L +Y KV G ++ D++ RE + P+A+ ++ G+YP P + Sbjct: 417 SAAYLLGMYGKVALGPPSVSARYEIHDVNGREMAAILPLAIFVLWVGLYPRPFLEIIDAS 476 Query: 480 LSSII 484 + +++ Sbjct: 477 VRNLL 481 >gi|237752480|ref|ZP_04582960.1| NADH-ubiquinone oxidoreductase [Helicobacter winghamensis ATCC BAA-430] gi|229375969|gb|EEO26060.1| NADH-ubiquinone oxidoreductase [Helicobacter winghamensis ATCC BAA-430] Length = 534 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 218/482 (45%), Positives = 309/482 (64%), Gaps = 22/482 (4%) Query: 17 VFVILFSSYLGCG-RRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF- 74 +F LF + L G + + A+ IS I F+L +W FDK FQ I ++ F Sbjct: 9 IFFPLFGALLAIGIKENLKTYAIVISAIELAFALLLWYGFDKSADGFQFITALSLVEGFG 68 Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF--REYMIAFLVLESMVIGAFLSL 132 SY +GVDGIS+ L++L+ F+ L + + EN+ ++ +I+ L LES++IG F +L Sbjct: 69 VSYLVGVDGISLFLILLSAFIG----LIGFIYLNENYEAKKLIISLLCLESIMIGVFCAL 124 Query: 133 DMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW---EK 189 DM+LFYIF+E SL+PM IIG WG RIYAA KFFLYTF GS+ ML I+ + + E Sbjct: 125 DMILFYIFWELSLVPMLYIIGAWGSGSRIYAAVKFFLYTFLGSMLMLVGILFLAYYYFEV 184 Query: 190 K---TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+++ Y++S P +Q W+++AFF A+K+PMFPFHTWLP AH QAPT GS+ Sbjct: 185 SGIWTFSLLEWYSLSAIPKGVQLWLFLAFFAGLAVKVPMFPFHTWLPYAHGQAPTIGSII 244 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LKMG YG +RF LPLFP AS +F + LSLI IIY + V+ Q DIK++IAYS Sbjct: 245 LAAVLLKMGTYGFVRFSLPLFPDASIFFLMPVAILSLIMIIYGAFVAFAQEDIKQVIAYS 304 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 SI+HMG + +GIF+ G+ G++F MLSHG++S ALF VG++Y+R HT+ I +GG+ Sbjct: 305 SISHMGVIMVGIFALNVEGITGSVFFMLSHGIISGALFMLVGMLYERRHTKMIAEFGGIA 364 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP YA + + MA+ GLP T GF+GEFL ++ FQ S +A +A +++ A+Y L Sbjct: 365 KVMPNYAAIFGIMAMASAGLPLTMGFVGEFLSLLGFFQVSPIMAGIAGISIIVGAVYMLH 424 Query: 427 LYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 LYRK FG K VQ LK DL+ RE + P+ + ++ G+YP PI + P++ + Sbjct: 425 LYRKTFFG--KVVNVQNLKLSDLNAREWSALLPLVAIVIWLGVYPKPILE----PINKGV 478 Query: 485 EN 486 EN Sbjct: 479 EN 480 >gi|50261303|ref|YP_052911.1| NADH dehydrogenase subunit 4 [Saprolegnia ferax] gi|48237616|gb|AAT40665.1| NADH dehydrogenase subunit 4 [Saprolegnia ferax] Length = 490 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/427 (47%), Positives = 290/427 (67%), Gaps = 3/427 (0%) Query: 45 FIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSS 103 FI SLF+W +FDK S FQ Y+W+ +Y + +G+DGIS+ ++ TTFL P C L+S Sbjct: 40 FIISLFLWILFDKTASEFQFSFTYNWLTNYNMYFSIGIDGISLFFIIATTFLIPICFLTS 99 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IY 162 ++ IQ+N +++ I F LE ++ F +LD+++FYIFFE+ LIPMF+IIG+WG ER I Sbjct: 100 YEIIQKNIKDFCILFFFLEFFLLITFSTLDLIIFYIFFESVLIPMFLIIGIWGSRERKIK 159 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+Y F+YT GS+FM AI+ + T+ I LY + F Q W+AFF SFA+K Sbjct: 160 ASYYLFIYTLTGSLFMFIAIIHIYITTGTTLYILLYNYN-FDLFYQKLYWLAFFFSFAVK 218 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PM PFH WLP AHV+APTAGSV LAGI+LK+G YG IRF LPLFP A+ +F P++ L Sbjct: 219 VPMLPFHIWLPEAHVEAPTAGSVILAGILLKLGSYGLIRFSLPLFPKATVFFTPLVLVLC 278 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 +I+IIYAS+ ++ QTD+K++IAY+S+AHM + +G+FS G+EG++ QMLSH +V+SA Sbjct: 279 IISIIYASITAIRQTDLKRIIAYASVAHMNMILVGLFSLTIEGIEGSLLQMLSHSIVASA 338 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF C+GV+YDR H+R + Y GL H MP Y++ + + AN+ +PGTS F+GE L++ + Sbjct: 339 LFLCIGVLYDRYHSRYLSYYSGLAHTMPIYSIFFLFYIFANISIPGTSSFVGELLILAGI 398 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 FQ + VA L+ +VL YSL LY +V +G + + D+S RE + + +T Sbjct: 399 FQENTIVAFLSGTSMVLGGAYSLLLYNRVCYGNIQSNFLNIFYDISYREFLIHIILIFIT 458 Query: 463 VFFGIYP 469 + G+YP Sbjct: 459 LVMGLYP 465 >gi|226227797|ref|YP_002761903.1| NADH-quinone oxidoreductase chain M [Gemmatimonas aurantiaca T-27] gi|226090988|dbj|BAH39433.1| NADH-quinone oxidoreductase chain M [Gemmatimonas aurantiaca T-27] Length = 512 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/451 (44%), Positives = 301/451 (66%), Gaps = 18/451 (3%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTF 94 V +G+ T+ F+ ++ +++ FD S Q WI ++ SY +G+DG+++LLV+LT F Sbjct: 35 VTVGVMTVQFLMTVALYTHFDSTVSGLQFATTVPWIAEWGVSYAIGMDGLNVLLVLLTGF 94 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P +L +W +I+ + + + L+L+ ++GAFL+ D+ LFY+F+EA LIPMF+IIG+ Sbjct: 95 LGPLVVLGAWTAIERDVTMFHVMVLLLQFAMMGAFLAQDLFLFYVFWEAMLIPMFLIIGI 154 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA-----MSKFPFSIQY 209 WGG+ R YA KF LYT FGSI ML A++ + + + + +A ++ P +Q Sbjct: 155 WGGARRSYATIKFVLYTAFGSILMLAALIYLVQSLQNAGGVASFAFTDLMQAQLPLDVQI 214 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 + AF SFAIK+PM P HTWLP+AHV+APT GSV LAG++LKMG YG I+ PLFP Sbjct: 215 TLLAAFALSFAIKVPMVPLHTWLPDAHVEAPTPGSVILAGVLLKMGTYGFIKLGFPLFPD 274 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 A++ F P++ LS+++I+Y + +++VQTDIKK+IAYSSI+H+GYV +G+ S +G++GA Sbjct: 275 ATRVFTPMLMTLSVVSIVYGACLALVQTDIKKIIAYSSISHLGYVMLGLLSLDLAGIQGA 334 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 + QM+SHGLV++ LF VG++Y+R HTR++ AYGGL +P YA+ +VFT+A++GLP T Sbjct: 335 IIQMVSHGLVAAGLFLLVGMVYERCHTRELSAYGGLARQIPVYAMFFIVFTLASVGLPTT 394 Query: 390 SGFIGEFLVIMSVFQ-------NSNT----VAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 SGF GEF+V++ F + N +AV+A GVVL ALY L +FG +K Sbjct: 395 SGFTGEFMVLLGAFNAAWPQHLDGNQLPLILAVVAVTGVVLGALYMLRFALTFLFGPAKA 454 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L DLSLRER ++ + V G++P Sbjct: 455 PHA-PLNDLSLRERSILAILMVSIFALGLFP 484 >gi|307318099|ref|ZP_07597535.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium meliloti AK83] gi|306896140|gb|EFN26890.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium meliloti AK83] Length = 491 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/472 (42%), Positives = 302/472 (63%), Gaps = 5/472 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M++P LS++ F+P G V++F R + ALG ++ + + + FD Sbjct: 1 MSIPLLSLIVFVPVAGAAVLMFMRSDDAVRWT----ALGFGIVDLALCVVMLAGFDTTTH 56 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q E W+ +Y LGVDGIS L + LT L+ +L+SW +I +E+M++ L Sbjct: 57 EMQFTESRPWVPALGITYALGVDGISALFLFLTALLSLISVLASWVAIDRKVKEFMVSLL 116 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++++++G F +LD+ LFY+F+EA LIPM++IIGVWGG R+YAA+KFFLYT GSI L Sbjct: 117 VMQALMLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFL 176 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++V+ ++ + I PF +Q W++ AF +FA+K+PM P HTWLP+AHVQA Sbjct: 177 IGVIVLYFQGGETFDILALTGQDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQA 236 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGS+ LAG++LKMG YG +RF LP+ P AS Y++ ++ LS +AI+Y L+++ Q D+ Sbjct: 237 PTAGSIILAGVLLKMGAYGFLRFSLPMLPEASLYYSTLMLALSALAIVYGGLLALAQDDL 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKL+AYSSI+HMG+VT+GIF+ G+EG++ QM +HG+ + ALF VG+IY+R HTR I Sbjct: 297 KKLVAYSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSI 356 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGGL+ P Y + +FT+++M LPGT+ F+GE LV+ F + A G +L Sbjct: 357 ANYGGLMKAAPVYTAFLALFTLSSMALPGTNAFVGELLVLSGGFAANLAAGAAAVVGALL 416 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 SA Y L +Y KV G ++ D++ RE + P+A+ ++ G+YP P Sbjct: 417 SAAYLLGMYGKVALGPPSVSAKYEIHDVNGREIAAILPLAIFVLWVGLYPRP 468 >gi|162146418|ref|YP_001600877.1| NADH-quinone oxidoreductase subunit M [Gluconacetobacter diazotrophicus PAl 5] gi|161784993|emb|CAP54536.1| putative NADH-quinone oxidoreductase chain M [Gluconacetobacter diazotrophicus PAl 5] Length = 524 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/471 (43%), Positives = 308/471 (65%), Gaps = 11/471 (2%) Query: 5 FLSIVTFLPFLGVFVILF-----SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 L +VT+LP G IL + G R VAL S I F S+ +W FD Sbjct: 27 LLPLVTYLPLGGALAILLMRGTSEAVEGASRW----VALWTSLIVFGLSVVMWGEFDPSL 82 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 FQ ++ W F SYH GVDGIS+L V+L+TFLTP ++ WK + R+YM+A Sbjct: 83 PGFQFVQQVGWASSFGISYHAGVDGISLLFVLLSTFLTPLAVIGGWKLVTTRVRDYMLAV 142 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+LE+ ++G F +LD++LFY+F+EA+LIP ++IGVWGG +R++A+ +FFL+TF GS+FM Sbjct: 143 LLLETTLVGLFSALDLVLFYVFYEATLIPGSLMIGVWGGPKRVWASIQFFLFTFGGSLFM 202 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L A++ M W ++ I + FP ++Q W+ + F +F +K+P+FP H WLP+A+ + Sbjct: 203 LLALLTM-WNMTGTTDIPTLMQATFPRAMQCWLLLGFVLAFGVKLPLFPLHAWLPDAYTE 261 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT S L+G++ K G YG +RF + +FP A++ FAP I L +IA+IYA+++++ QTD Sbjct: 262 APTPTSALLSGVLSKAGAYGLLRFGVLMFPEAARLFAPYILTLGVIAVIYAAIIALAQTD 321 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K++IAYSS +HMG + +G+F+ G++GA+F MLSHG++ +ALFFCV + R TR Sbjct: 322 MKRVIAYSSFSHMGVIAVGLFTLTPEGIDGAIFTMLSHGVIITALFFCVAAVSWRAETRS 381 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I A+ G+ H MP A + M+F MAN+GLPGT F+GE LV++ S VA LA ++ Sbjct: 382 IDAFSGVAHKMPVLATLAMLFVMANIGLPGTGSFVGELLVMVGAIHVSFWVAFLAGSTMI 441 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L A+Y L LYR+V+FG + V L+DL+ E ++ P A++T++ GI+P Sbjct: 442 LGAVYMLVLYRRVMFGAAGHGVVAMLRDLTGPELAVLVPCALVTLWMGIHP 492 >gi|224020982|ref|YP_002608215.1| NADH dehydrogenase subunit 4 [Carica papaya] Length = 495 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 211/453 (46%), Positives = 291/453 (64%), Gaps = 3/453 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTF 94 + L S I F++S FD + Q +E W+ Y ++ LG+DGIS+ V+LTTF Sbjct: 40 IGLCASLITFLYSPVPRIQFDPSTAKSQFVESLRWLPYENINFDLGIDGISLFFVILTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CI W ++ +EY+ A L+ E ++I F LD+LLFY+F E+ IPM +IIGV Sbjct: 100 LIPICISVGWSGMRSYGKEYITASLIREFLMIAVFRMLDLLLFYVFPESVPIPMTIIIGV 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+FFLYT GS+FML AI+++ + T+ + + ++F Q ++WI Sbjct: 160 WGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDL-QISLTTEFSERRQIFLWI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 A F SFA+K+PM P H WLP AHV+APTAGSV LAGI LK+G YG +RF +P+FP A+ Sbjct: 219 ASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLKLGTYGFLRFSIPMFPEATLC 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 P I+ LS IAIIY SL + Q D+KK+IAYSS+AHM VTIG+FS G+ G++ M Sbjct: 279 STPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNLVTIGMFSSNIQGIGGSIPPM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLV SALF CVGV+YDR TR + YGGLV MP + + T+ANM PGTS FI Sbjct: 339 LSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLSTISFSLTLANMSSPGTSSFI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEF +++ FQ ++ VA LA+ G++L A YSLWLY +VV G K + + + D + RE Sbjct: 399 GEFPILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLHKFSDSNGREVS 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V V G++P D +S+++++ Sbjct: 459 IFIPFLVGLVRMGVHPKVFPDCMHTSVSNLVQH 491 >gi|323149034|ref|YP_004222811.1| NADH dehydrogenase subunit 4 [Vigna radiata] gi|308206740|gb|ADO19877.1| NADH dehydrogenase subunit 4 [Vigna radiata] Length = 495 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 208/453 (45%), Positives = 289/453 (63%), Gaps = 3/453 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTF 94 + L S I F++S FD + Q +E W+ Y + +LG+DG+S V+LTTF Sbjct: 40 IGLCASLITFLYSPVPRIQFDPSTAKSQFVESLRWLPYENINLNLGIDGLSFFFVILTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CIL W ++ +EY+ A L+ E ++I F LD LLFY+ E+ LIPMF+IIGV Sbjct: 100 LIPICILVGWSGMRSYGKEYITASLIREFLMIAVFRMLDPLLFYVLPESVLIPMFIIIGV 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+FFLYT GS+FML AI+++ ++ T+ + + ++F Q ++WI Sbjct: 160 WGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILFQTGTADL-QISLTTEFSERRQIFLWI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 A F +FA+K+PM P H WLP AHV+APTAGSV LAGI K+G +G +RF +P+FP A+ Sbjct: 219 ASFAAFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPSKLGTHGFLRFSIPMFPEATLC 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 P I+ S IAIIY SL + Q D+KK+IAYSS+AHM VTIG+FS G+ G++ M Sbjct: 279 STPFIYTPSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSIPPM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLV SALF CVGV+YDR TR + YGGLV MP + + T+ANM PGTS FI Sbjct: 339 LSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLSTISFSSTLANMSSPGTSSFI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEF + + FQ ++ VA LA+ G++L A YSLWLY +VV G K + + + D + RE Sbjct: 399 GEFPISVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKADFLHKFSDPNGREVS 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V V G++P D +S+++++ Sbjct: 459 IFIPFLVGVVRMGVHPKVFPDRMHTYVSNLVQH 491 >gi|160900600|ref|YP_001566182.1| proton-translocating NADH-quinone oxidoreductase subunit M [Delftia acidovorans SPH-1] gi|160366184|gb|ABX37797.1| proton-translocating NADH-quinone oxidoreductase, chain M [Delftia acidovorans SPH-1] Length = 491 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/440 (45%), Positives = 302/440 (68%), Gaps = 7/440 (1%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD ++ Q +E WI+ F YHLGVDGIS V LT F+T +++SW++I E + Sbjct: 52 FDNSTAAMQFVEKALWIERFNIYYHLGVDGISFWFVPLTAFITVIVVIASWENITERVNQ 111 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 YM AFL+L +++G F +LD LLFY+FFEA+LIPM++IIG+WGG RIYAA+KFFLYT Sbjct: 112 YMGAFLILSGLMVGVFSALDGLLFYVFFEATLIPMYLIIGIWGGPNRIYAAFKFFLYTLM 171 Query: 174 GSIFMLFAIVVMCWEKKTS-SIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHT 230 GS+ L AI+ + + S I+D + K P S+ Q ++ AFF +FA+K+PM+P HT Sbjct: 172 GSLLTLIAIIYLYTQSGGSFEILDWH---KLPLSMTAQTLIFFAFFAAFAVKVPMWPVHT 228 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+ HV+APT GS LA IMLK+G YG +RF +P+ P AS +A ++ LSL+A+IY Sbjct: 229 WLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDASHKWAWLVIALSLVAVIYVG 288 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 +V++VQ D+KKL+AYSS+AHMG+VT+G F GV G + QM++HG VS A+F C+GV+ Sbjct: 289 VVALVQKDMKKLVAYSSVAHMGFVTLGFFIFNPLGVAGGIVQMIAHGFVSGAMFLCIGVL 348 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 YDR+H+R+I +YGG+V+ MP++A ++F MAN GLP T+GF+GE++VI+ Q + + Sbjct: 349 YDRVHSREIASYGGVVNTMPKFAAFALLFAMANCGLPATAGFVGEWMVILGAVQYNFWIG 408 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 + A+ ++ A Y+LW+Y++V G + V+ L D+ RE ++ +A+ ++ G+YP Sbjct: 409 LGAATALIFGAAYTLWMYKRVYLGPVTNDNVRGLTDIGNREFLVLGLLAIAVLYMGLYPK 468 Query: 471 PIRDTFSVPLSSIIENYTLK 490 P D V ++ ++++ + Sbjct: 469 PFTDVMDVSVAELLKHVAMS 488 >gi|283795036|ref|YP_003359451.1| NADH dehydrogenase subunit 4 [Synedra acus] gi|261279692|gb|ACX62000.1| NADH dehydrogenase subunit 4 [Synedra acus] Length = 499 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/436 (46%), Positives = 291/436 (66%), Gaps = 5/436 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 +AL + + F+ SL FDK +FQM + W+D+ + + GVDGISI ++LTT Sbjct: 47 IALKSTCVVFLLSLSCLIFFDKREGAFQMKFNFRWLDFVNMNLNFGVDGISIFFIILTTL 106 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L C+L +W + + + +I FLVLE +++ F LD+L FYIFFE+ LIPMF+IIG+ Sbjct: 107 LIMLCVLVNWDT--SSLKINLICFLVLEFLLVNVFSILDLLFFYIFFESVLIPMFLIIGI 164 Query: 155 WGGSE-RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG + RI A+Y FLYT GSI ML AI+ + + T++ ++ +F QY +WI Sbjct: 165 WGSRQRRIRASYFLFLYTVLGSILMLIAILYIYVQVGTTN-YEILLTFRFSTLEQYILWI 223 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF SFA KIPM P H WLP AHV+APT+GSV LAGI+LK+G YG +RF LPLFP AS Y Sbjct: 224 VFFLSFATKIPMIPTHLWLPEAHVEAPTSGSVILAGILLKLGSYGFLRFSLPLFPEASFY 283 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F+P+I+ ++ I II+AS ++ QTD K++IAY+S+AHM V +GIFS G+ G++ Q Sbjct: 284 FSPMIYTIASIGIIFASFTAIRQTDFKRIIAYTSVAHMNLVVLGIFSFNAIGLAGSIIQS 343 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHG V+SALF +GV+YDR +R + YGGLVH MP Y+ + + FTMAN+GLPGTS F+ Sbjct: 344 LSHGFVASALFLLIGVVYDRHGSRMVKYYGGLVHVMPMYSTIFLFFTMANIGLPGTSSFV 403 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+++ F+ + TV VL + +++ YSLWL+ +V++G K + + DL+ ++ Sbjct: 404 GEFLILIGSFKFNTTVTVLGATSMIIGGCYSLWLFNRVIYGNLKTQYINNFSDLTKKDLF 463 Query: 454 MVYPIAVLTVFFGIYP 469 + P+ T GI+P Sbjct: 464 VFMPLLSCTFLLGIFP 479 >gi|126695329|ref|YP_001090216.1| NADH dehydrogenase subunit 4 [Oscarella carmela] gi|116876185|gb|ABK30949.1| NADH dehydrogenase subunit 4 [Oscarella carmela] Length = 495 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 212/450 (47%), Positives = 291/450 (64%), Gaps = 15/450 (3%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH------LGVDGISILLVVLTTFLTPFCIL 101 ++ +W FD G FQ + WI + VDGISI ++LT LTP CIL Sbjct: 51 TIILWISFD-GEGQFQATQIIEWISSTTNLWSNGVVVFAVDGISIFFIILTALLTPICIL 109 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SER 160 SW SI+ +E+++ + LE ++IG F +LD+LLFYI FE LIPMF+IIG+WG E+ Sbjct: 110 ISWNSIKFLLKEFLLCLIFLEILLIGVFTALDLLLFYILFEGILIPMFLIIGIWGAREEK 169 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 + A+Y FF YT GS+FML I V+ T+ L + + IQ W+++ F S A Sbjct: 170 VLASYYFFFYTLIGSVFMLLGIFVLYSNTGTTDYQTLCGL-QLDGEIQKWVFMGVFVSLA 228 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 IKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF P+ P AS+YFAP+I Sbjct: 229 IKIPKIPFHIWLPQAHVEAPCAGSVMLAGVLLKIGGYGFIRFSWPILPEASEYFAPLILT 288 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL+A+IY SL + Q D K+LIAYSS+AHMG VT+GIF+ G+ A+F ML+HGLVS Sbjct: 289 LSLLAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVTLGIFTHTIQGLVAAIFLMLAHGLVS 348 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S+LF V ++Y+R HTR I Y G+ MP +A +M++ T+AN+ +P + F+GEFL ++ Sbjct: 349 SSLFIIVTLLYERHHTRLIKYYRGMTITMPIFATIMLLMTLANIAVPLSCNFVGEFLSLL 408 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 + F+ S V +LAS G+VL A YSL+LY +V FG S + +D++ RE ++ P+ Sbjct: 409 AAFEYSVIVGILASLGMVLGAAYSLYLYNRVCFGNSSNYXIFS-RDINRREFYVLLPLIG 467 Query: 461 LTVFFGIYPVPIRDTFSVPLSSII--ENYT 488 LTV G+YP I DT S+II EN+T Sbjct: 468 LTVLMGVYPSAIIDTVK---STIIFQENHT 494 >gi|206889454|ref|YP_002248756.1| NADH-quinone oxidoreductase chain m [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741392|gb|ACI20449.1| NADH-quinone oxidoreductase chain m [Thermodesulfovibrio yellowstonii DSM 11347] Length = 538 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 222/497 (44%), Positives = 332/497 (66%), Gaps = 9/497 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 ++ P LS + F P G +I + + + AL IS + FIFS+ ++ F+K Sbjct: 43 LSFPILSTLIFFPVAGAALI---AIIPRDKEELIKFSALIISIVEFIFSIPLYISFNKTT 99 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S Q E + WI ++ Y+LGVDGISIL ++L++ LT C+ SWK I +E+ A Sbjct: 100 SQMQFKEEHLWIPEWGIKYYLGVDGISILFILLSSLLTILCVTVSWKEIDRKIKEFYAAL 159 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+ S +IG F+SLD+ LFYIF+EA LIPM++IIG+WGG RIY+A KFFLYTF GS+ M Sbjct: 160 LITHSAMIGVFMSLDIFLFYIFWEAMLIPMYLIIGIWGGPRRIYSAIKFFLYTFIGSVLM 219 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L I+V+ + TS I+ L S +P+ +Q W++ AFF +FA+K+PM+P HTWLP+AH + Sbjct: 220 LVGILVLYFHTGTSDILSLMKNS-YPYKMQLWLFWAFFAAFAVKVPMWPVHTWLPDAHTE 278 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAG+++KMG YG +RF LP+FP A+ P + LS+IAIIY +L+ ++Q D Sbjct: 279 APTAGSVILAGVLIKMGAYGFLRFNLPMFPEATLAMKPFMMILSVIAIIYGALICLIQKD 338 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+LIAYSS++HMG+VT+GIF+ + G++G + QML+HG+V+ ALF C+G++Y R HTR Sbjct: 339 LKRLIAYSSVSHMGFVTLGIFALNQQGIQGGIIQMLNHGVVTGALFLCIGIVYQRTHTRQ 398 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I YGG+ MP Y+ M+FT+A++GLPGT+GFIGEFL+++ F+ + +LA+ ++ Sbjct: 399 IAHYGGVATVMPAYSAFFMIFTLASIGLPGTNGFIGEFLILLGTFKAWKLMCILAATALI 458 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLK---DLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 + A Y LWLY++V F + E +Q + DL+ RE + P+ ++ ++ G YP + Sbjct: 459 IGAAYMLWLYQRVFFEKTNPEFLQHIHGYSDLNSREIVTLLPLVLVVLWIGFYPNALLSF 518 Query: 476 FSVPLSSIIENYTLKTG 492 V + +I + T G Sbjct: 519 MDVSVKELINHVTQSVG 535 >gi|317097412|ref|YP_004123617.1| NADH dehydrogenase subunit 4 [Oscarella malakhovi] gi|312162789|gb|ADO51546.1| NADH dehydrogenase subunit 4 [Oscarella malakhovi] Length = 486 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 212/450 (47%), Positives = 291/450 (64%), Gaps = 15/450 (3%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH------LGVDGISILLVVLTTFLTPFCIL 101 ++ +W FD G FQ + WI + VDGISI ++LT LTP CIL Sbjct: 42 TIILWISFD-GEGQFQATQIIEWISSTTNLWSNGVVVFAVDGISIFFIILTALLTPICIL 100 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SER 160 SW SI+ +E+++ + LE ++IG F +LD+LLFYI FE LIPMF+IIG+WG E+ Sbjct: 101 ISWNSIKFLLKEFLLCLIFLEILLIGVFTALDLLLFYILFEGILIPMFLIIGIWGAREEK 160 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 + A+Y FF YT GS+FML I V+ T+ L + + IQ W+++ F S A Sbjct: 161 VLASYYFFFYTLIGSVFMLLGIFVLYSNTGTTDYQTLCGL-QLDGEIQKWVFMGVFVSLA 219 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 IKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF P+ P AS+YFAP+I Sbjct: 220 IKIPKIPFHIWLPQAHVEAPCAGSVMLAGVLLKIGGYGFIRFSWPILPEASEYFAPLILT 279 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL+A+IY SL + Q D K+LIAYSS+AHMG VT+GIF+ G+ A+F ML+HGLVS Sbjct: 280 LSLLAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVTLGIFTHTIQGLVAAIFLMLAHGLVS 339 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S+LF V ++Y+R HTR I Y G+ MP +A +M++ T+AN+ +P + F+GEFL ++ Sbjct: 340 SSLFIIVTLLYERHHTRLIKYYRGMTITMPIFATIMLLMTLANIAVPLSCNFVGEFLSLL 399 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 + F+ S V +LAS G+VL A YSL+LY +V FG S + +D++ RE ++ P+ Sbjct: 400 AAFEYSVIVGILASLGMVLGAAYSLYLYNRVCFGNSSNYIIFS-RDINRREFYVLLPLIG 458 Query: 461 LTVFFGIYPVPIRDTFSVPLSSII--ENYT 488 LTV G+YP I DT S+II EN+T Sbjct: 459 LTVLMGVYPSAIIDTVK---STIIFQENHT 485 >gi|153207248|ref|ZP_01946012.1| NADH dehydrogenase (ubiquinone), M subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165918810|ref|ZP_02218896.1| NADH dehydrogenase (ubiquinone), M subunit [Coxiella burnetii RSA 334] gi|212218225|ref|YP_002305012.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii CbuK_Q154] gi|120576736|gb|EAX33360.1| NADH dehydrogenase (ubiquinone), M subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165917534|gb|EDR36138.1| NADH dehydrogenase (ubiquinone), M subunit [Coxiella burnetii RSA 334] gi|212012487|gb|ACJ19867.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii CbuK_Q154] Length = 506 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/499 (42%), Positives = 319/499 (63%), Gaps = 17/499 (3%) Query: 2 NLPFLSIVTFLPFLGVF-VILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 ++P LS + +LP LG V L +S + +AL I+ I+F+ + ++ FD R+ Sbjct: 5 HIPLLSTLIWLPILGAIPVALLNSEERANQARV--LALIIALISFVLCIPLYFGFDTTRA 62 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q E+ +WI +Y LGVDGIS+ L+VLT F T +L+SW +++ Y+ AFL Sbjct: 63 SMQFTEHVNWISALKINYDLGVDGISMPLIVLTCFTTLLVVLASWTMVKKQVGHYLSAFL 122 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++ VIG F +LD +LFY F+EA LIPM++ IG+WG +R YAA KFFLYTFFGS +L Sbjct: 123 VMQGAVIGVFSALDAMLFYFFWEAMLIPMYISIGIWGMEKRSYAAIKFFLYTFFGSALLL 182 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ + + I D Y + ++Q +++ F +FAIK+PM+P HTWLP+AH +A Sbjct: 183 VALLYLRMHSDSFYIPDYYRL-HMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P GSV LA +MLK+GGYG +RF LP+ P AS+ ++ LSLIAI+Y +++ QTD+ Sbjct: 242 PVGGSVVLAALMLKLGGYGFLRFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDM 301 Query: 300 KKLIAYSSIAHMGYVTIGIF--------SGMKS----GVEGAMFQMLSHGLVSSALFFCV 347 KKLIAYSS+AHMG+VT+G F +G ++ +EGAM QM+SH + A+F Sbjct: 302 KKLIAYSSVAHMGFVTLGAFMVFFIVAHTGDRADAYLSLEGAMVQMISHAFGAGAMFLAF 361 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 GV+Y+++H+R I+ +GG+ MP +A MVF M+N+GLPGTSGF+GEF+V++S F+ S Sbjct: 362 GVLYEQIHSRYIYNFGGIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKASF 421 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 V LA+ +V+ A Y+LW+Y++V +G V QLK++ + ++ + + V+ GI Sbjct: 422 WVTFLAASTLVIGAAYTLWMYKRVFYGPVTTPAVAQLKEIGVTDKIIFILVTAAIVWIGI 481 Query: 468 YPVPIRDTFSVPLSSIIEN 486 YP + + F + ++ Sbjct: 482 YPNSLLNVFHASIGKLLHE 500 >gi|154705922|ref|YP_001423969.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii Dugway 5J108-111] gi|154355208|gb|ABS76670.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii Dugway 5J108-111] Length = 506 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/499 (42%), Positives = 319/499 (63%), Gaps = 17/499 (3%) Query: 2 NLPFLSIVTFLPFLGVF-VILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 ++P LS + +LP LG V L +S + +AL I+ I+F+ + ++ FD R+ Sbjct: 5 HIPLLSTLIWLPILGAIPVALLNSEERANQARV--LALIIALISFVLCIPLYFGFDTTRA 62 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q E+ +WI +Y LGVDGIS+ L+VLT F T +L+SW +++ Y+ AFL Sbjct: 63 STQFTEHVNWISALKINYDLGVDGISMPLIVLTCFTTLLVVLASWTMVKKQVGHYLSAFL 122 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++ VIG F +LD +LFY F+EA LIPM++ IG+WG +R YAA KFFLYTFFGS +L Sbjct: 123 VMQGAVIGVFSALDAMLFYFFWEAMLIPMYISIGIWGMEKRSYAAIKFFLYTFFGSALLL 182 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ + + I D Y + ++Q +++ F +FAIK+PM+P HTWLP+AH +A Sbjct: 183 VALLYLRMHSDSFYIPDYYRL-HMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P GSV LA +MLK+GGYG +RF LP+ P AS+ ++ LSLIAI+Y +++ QTD+ Sbjct: 242 PVGGSVVLAALMLKLGGYGFLRFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDM 301 Query: 300 KKLIAYSSIAHMGYVTIGIF--------SGMKS----GVEGAMFQMLSHGLVSSALFFCV 347 KKLIAYSS+AHMG+VT+G F +G ++ +EGAM QM+SH + A+F Sbjct: 302 KKLIAYSSVAHMGFVTLGAFMVFFIVAHTGDRADAYLSLEGAMVQMISHAFGAGAMFLAF 361 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 GV+Y+++H+R I+ +GG+ MP +A MVF M+N+GLPGTSGF+GEF+V++S F+ S Sbjct: 362 GVLYEQIHSRYIYNFGGIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKASF 421 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 V LA+ +V+ A Y+LW+Y++V +G V QLK++ + ++ + + V+ GI Sbjct: 422 WVTFLAASTLVIGAAYTLWMYKRVFYGPVTTPAVAQLKEIGVTDKIIFILVTAAIVWIGI 481 Query: 468 YPVPIRDTFSVPLSSIIEN 486 YP + + F + ++ Sbjct: 482 YPNSLLNVFHASMGKLLHE 500 >gi|42525208|ref|NP_970588.1| NADH dehydrogenase I chain M [Bdellovibrio bacteriovorus HD100] gi|39577419|emb|CAE81242.1| NADH dehydrogenase I chain M [Bdellovibrio bacteriovorus HD100] Length = 517 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 205/500 (41%), Positives = 325/500 (65%), Gaps = 23/500 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + FLP L ++ R +ALG+S I FI SL ++ FD + QM+ Sbjct: 3 LSSIVFLPLLFALLVAIWPKANTVRH----LALGLSVIEFIVSLSLFKNFDASATGLQMV 58 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + WI+ F Y +G+DGIS+ LV+LTTFLTP IL+SW SI E + + + +L++ Sbjct: 59 EKFMWIERFGIQYFMGIDGISLWLVLLTTFLTPIIILASWTSITERVKGFHVCMFILQTA 118 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G FL++D + FY+F+E SL+PM+ ++G+WGG+ RIYA KFF+YT GS+ ML AI+ Sbjct: 119 MLGTFLAMDAVFFYVFWELSLVPMYFMVGIWGGARRIYATVKFFIYTMAGSVLMLVAIIY 178 Query: 185 MCW------EKKTSSIIDLYAMSKFPF------SIQYWMWIAFFCSFAIKIPMFPFHTWL 232 M + + ++S++D Y + + PF S+Q ++ AF +FAIK+P FP HTWL Sbjct: 179 MMYLTQEATGQMSASLLDFYQL-QIPFVGGTFFSLQTLLFFAFALAFAIKVPAFPVHTWL 237 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHV+APT GSV LAG+MLKMG YG +R+++PLFP AS+Y+A + + + IIY +LV Sbjct: 238 PDAHVEAPTPGSVILAGVMLKMGTYGFMRWVIPLFPEASEYWAWLFMLIGTVGIIYGALV 297 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 +MVQ D+KKL+AYSS++HMGY+ +G+F+ G+ G ++QML+HG+ + ALF +G+IY+ Sbjct: 298 AMVQPDVKKLVAYSSVSHMGYILLGLFAFNAYGMGGGLYQMLNHGISTGALFILIGMIYE 357 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R H+R+I YGGL +P + + + T++++ +P T+GF+GEF +++ +Q A Sbjct: 358 RTHSREISKYGGLAGVLPIFTIFFFIITLSSIAVPMTNGFVGEFFILLGTYQAHPVFAYF 417 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIY 468 A GVVL A+Y LW++++V FG + E V+ L DL+ RE ++ P+ ++ + G++ Sbjct: 418 AVSGVVLGAVYMLWMFKRVFFG-EQGELVKDEHHPLHDLNAREITVLVPLVIMVFWMGLF 476 Query: 469 PVPIRDTFSVPLSSIIENYT 488 P + + ++ N + Sbjct: 477 PNHFLNFSKASIDHLVNNRS 496 >gi|307304392|ref|ZP_07584143.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium meliloti BL225C] gi|306902594|gb|EFN33188.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sinorhizobium meliloti BL225C] Length = 491 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/472 (42%), Positives = 301/472 (63%), Gaps = 5/472 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M++P LS++ F+P G V++F R + ALG ++ + + + FD Sbjct: 1 MSIPLLSLIVFVPVAGAAVLMFMRSDDAVRWT----ALGFGIVDLALCVVMLAGFDTTTH 56 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q E W+ +Y LGVDGIS L + LT L+ +L+SW +I +E+M++ L Sbjct: 57 EMQFTESRPWVPALGITYALGVDGISALFLFLTALLSLISVLASWVAIDRKVKEFMVSLL 116 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++++++G F +LD+ LFY+F+EA LIPM++IIGVWGG R+YAA+KFFLYT GSI L Sbjct: 117 VMQALMLGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFL 176 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++V+ ++ + I PF +Q W++ AF +FA+K+PM P HTWLP+AHVQA Sbjct: 177 IGVIVLYFQGGETFDILALTGQDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQA 236 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGS+ LAG++LKMG YG +RF L + P AS Y++ ++ LS +AI+Y L+++ Q D+ Sbjct: 237 PTAGSIILAGVLLKMGAYGFLRFSLSMLPEASLYYSTLMLALSALAIVYGGLLALAQDDL 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKL+AYSSI+HMG+VT+GIF+ G+EG++ QM +HG+ + ALF VG+IY+R HTR I Sbjct: 297 KKLVAYSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSI 356 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGGL+ P Y + +FT+++M LPGT+ F+GE LV+ F + A G +L Sbjct: 357 ANYGGLMKAAPVYTAFLALFTLSSMALPGTNAFVGELLVLSGGFAANLAAGAAAVVGALL 416 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 SA Y L +Y KV G ++ D++ RE + P+A+ ++ G+YP P Sbjct: 417 SAAYLLGMYGKVALGPPSVSAKYEIHDVNGREIAAILPLAIFVLWVGLYPRP 468 >gi|317097066|ref|YP_004123208.1| NADH dehydrogenase subunit 4 [Oscarella viridis] gi|308912701|gb|ADO51461.1| NADH dehydrogenase subunit 4 [Oscarella viridis] Length = 491 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 208/435 (47%), Positives = 286/435 (65%), Gaps = 10/435 (2%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWI----DYFCSYHL--GVDGISILLVVLTTFLTPFCIL 101 ++ +W FD G FQ + WI D + S + VDGISI ++LT L P CIL Sbjct: 47 TIILWISFD-GEGQFQATQIIEWISSTTDLWSSGMVVFAVDGISIFFIILTALLIPICIL 105 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SER 160 SW SI+ +E+++ + LE +++G F +LD+LLFYI FE LIPMF+IIG+WG E+ Sbjct: 106 ISWNSIKFLLKEFLLCLIFLEILLMGVFTALDLLLFYILFEGILIPMFLIIGIWGAREEK 165 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 + A+Y FF YT GS+FML I V+ T+ L + + IQ W+++ FF S A Sbjct: 166 VLASYYFFFYTLIGSVFMLLGIFVLYSNTGTTDYQTLCGL-RLDSEIQKWVFMGFFVSLA 224 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 IKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF P+ P AS+YFAP+I Sbjct: 225 IKIPKIPFHIWLPQAHVEAPCAGSVMLAGVLLKIGGYGFIRFSWPILPEASEYFAPLILT 284 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL+A+IY SL + Q D K+LIAYSS+AHMG VT+GIF+ G+ A+F ML+HGLVS Sbjct: 285 LSLLAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVTLGIFTHTIQGLVAAIFLMLAHGLVS 344 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S+LF V ++Y+R HTR I Y G+ MP +A +M++ T+AN+ +P + F+GEFL ++ Sbjct: 345 SSLFIIVTLLYERHHTRLIKYYRGMTITMPIFATIMLLMTLANIAVPLSCNFVGEFLSLL 404 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 + F+ S V VLAS G+VL A YSL+LY +V FG S + +D++ RE ++ P+ Sbjct: 405 AAFEYSIIVGVLASLGMVLGAAYSLYLYNRVCFGNSSNYIIFS-RDVNRREFYVLLPLIG 463 Query: 461 LTVFFGIYPVPIRDT 475 LT+ GIYP I DT Sbjct: 464 LTILMGIYPSAIIDT 478 >gi|212212194|ref|YP_002303130.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii CbuG_Q212] gi|212010604|gb|ACJ17985.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii CbuG_Q212] Length = 506 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/499 (42%), Positives = 318/499 (63%), Gaps = 17/499 (3%) Query: 2 NLPFLSIVTFLPFLGVF-VILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 ++P LS + +LP LG V L +S + +AL I+ I+F+ + ++ FD R+ Sbjct: 5 HIPLLSTLIWLPILGAIPVALLNSEERANQARV--LALIIALISFVLCIPLYFGFDTTRA 62 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q E+ +WI +Y LGVDGIS+ L+VLT F T +L+SW +++ Y+ AFL Sbjct: 63 SMQFTEHVNWISALKINYDLGVDGISMPLIVLTCFTTLLVVLASWTMVKKQVGHYLSAFL 122 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++ VIG F +LD +LFY F+EA LIPM++ IG+WG +R YAA KFFLYTFFGS +L Sbjct: 123 VMQGAVIGVFSALDAMLFYFFWEAMLIPMYISIGIWGMEKRSYAAIKFFLYTFFGSALLL 182 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ + + I D Y + ++Q +++ F +FAIK+PM+P HTWLP+AH +A Sbjct: 183 VALLYLRMHSDSFYIPDYYRL-HMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P GSV LA +MLK+GGYG RF LP+ P AS+ ++ LSLIAI+Y +++ QTD+ Sbjct: 242 PVGGSVVLAALMLKLGGYGFFRFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDM 301 Query: 300 KKLIAYSSIAHMGYVTIGIF--------SGMKS----GVEGAMFQMLSHGLVSSALFFCV 347 KKLIAYSS+AHMG+VT+G F +G ++ +EGAM QM+SH + A+F Sbjct: 302 KKLIAYSSVAHMGFVTLGAFMVFFIVAHTGDRADAYLSLEGAMVQMISHAFGAGAMFLAF 361 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 GV+Y+++H+R I+ +GG+ MP +A MVF M+N+GLPGTSGF+GEF+V++S F+ S Sbjct: 362 GVLYEQIHSRYIYNFGGIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKASF 421 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 V LA+ +V+ A Y+LW+Y++V +G V QLK++ + ++ + + V+ GI Sbjct: 422 WVTFLAASTLVIGAAYTLWMYKRVFYGPVTTPAVAQLKEMGVTDKIIFILVTAAIVWIGI 481 Query: 468 YPVPIRDTFSVPLSSIIEN 486 YP + + F + ++ Sbjct: 482 YPNSLLNVFHASIGKLLHE 500 >gi|317134284|ref|YP_004123167.1| NADH dehydrogenase subunit 4 [Pseudocorticium jarrei] gi|308912685|gb|ADO51446.1| NADH dehydrogenase subunit 4 [Pseudocorticium jarrei] Length = 486 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 205/435 (47%), Positives = 286/435 (65%), Gaps = 10/435 (2%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWID-----YFCSYHL-GVDGISILLVVLTTFLTPFCIL 101 ++ +W FD G FQ + WI+ +F + VDGISI ++LT L P CIL Sbjct: 42 TIILWISFD-GEGQFQATQIIEWINSTTGLWFSGMVVFAVDGISIFFIILTALLIPICIL 100 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SER 160 SW SI+ +E+++ + LE +++G F +LD+LLFYI FE LIPMF+IIG+WG E+ Sbjct: 101 ISWNSIKFLLKEFLLCLIFLEILLMGVFTALDLLLFYILFEGILIPMFLIIGIWGAREEK 160 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 + A+Y FF YT GS+FML I V+ T+ L + + IQ W+++ FF S A Sbjct: 161 VLASYYFFFYTLIGSVFMLLGIFVLYSNTGTTDYQTLCGL-RLDGEIQKWVFMGFFVSLA 219 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 IKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF P+ P AS+YFAP+I Sbjct: 220 IKIPKIPFHIWLPQAHVEAPCAGSVMLAGVLLKIGGYGFIRFSWPILPEASEYFAPLILT 279 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL+A+IY SL + Q D K+LIAYSS+AHMG VT+GIF+ G+ A+F ML+HGLVS Sbjct: 280 LSLLAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVTLGIFTHTIQGLVAAIFLMLAHGLVS 339 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S+LF V ++Y+R HTR I Y G+ MP +A +M+ T+AN+ +P + F+GEF+ ++ Sbjct: 340 SSLFIIVTLLYERHHTRLIKYYRGMTITMPVFATIMLWMTLANIAVPLSCNFVGEFISLL 399 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 + F+ S V +LAS G+VL A YSL+LY +V FG S + +D++ RE ++ P+ + Sbjct: 400 AAFEYSIVVGILASLGIVLGAAYSLYLYNRVCFGNSSNYIIFS-RDVNRREYYVLLPLVI 458 Query: 461 LTVFFGIYPVPIRDT 475 LT+ GIYP I DT Sbjct: 459 LTIIIGIYPSAIIDT 473 >gi|29654727|ref|NP_820419.1| NADH dehydrogenase (ubiquinone), M subunit [Coxiella burnetii RSA 493] gi|161831072|ref|YP_001597280.1| NADH dehydrogenase (ubiquinone), M subunit [Coxiella burnetii RSA 331] gi|29541995|gb|AAO90933.1| NADH-quinone oxidoreductase chain M [Coxiella burnetii RSA 493] gi|161762939|gb|ABX78581.1| NADH dehydrogenase (ubiquinone), M subunit [Coxiella burnetii RSA 331] Length = 506 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 210/499 (42%), Positives = 318/499 (63%), Gaps = 17/499 (3%) Query: 2 NLPFLSIVTFLPFLGVF-VILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 ++P LS + +LP LG V L +S + +AL I+ I+F+ + ++ FD R+ Sbjct: 5 HIPLLSTLIWLPILGAIPVALLNSEERANQARV--LALIIALISFVLCIPLYFGFDTTRA 62 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q E+ +WI +Y LGVDGIS+ L+VLT F T +L+SW +++ Y+ AFL Sbjct: 63 SMQFTEHVNWISALKINYDLGVDGISMPLIVLTCFTTLLVVLASWTMVKKQVGHYLSAFL 122 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++ VIG F +LD +LFY F+EA LIPM++ IG+WG +R YAA KFFLYTFFGS +L Sbjct: 123 VMQGAVIGVFSALDAMLFYFFWEAMLIPMYISIGIWGMEKRSYAAIKFFLYTFFGSALLL 182 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ + + I D Y + ++Q +++ F +FAIK+PM+P HTWLP+AH +A Sbjct: 183 VALLYLRMHSDSFYIPDYYRL-HMSMTVQILVFLGFLFAFAIKVPMWPLHTWLPDAHTEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P GSV LA +MLK+GGYG RF LP+ P AS+ ++ LSLIAI+Y +++ QTD+ Sbjct: 242 PVGGSVVLAALMLKLGGYGFFRFSLPIVPDASRQLDWLMIALSLIAIVYIGFIAIAQTDM 301 Query: 300 KKLIAYSSIAHMGYVTIGIF--------SGMKS----GVEGAMFQMLSHGLVSSALFFCV 347 KKLIAYSS+AHMG+VT+G F +G ++ +EGAM QM+SH + A+F Sbjct: 302 KKLIAYSSVAHMGFVTLGAFMVFFIVAHTGDRADAYLSLEGAMVQMISHAFGAGAMFLAF 361 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 GV+Y+++H+R I+ +GG+ MP +A MVF M+N+GLPGTSGF+GEF+V++S F+ S Sbjct: 362 GVLYEQIHSRYIYNFGGIAKTMPYFAAFFMVFAMSNVGLPGTSGFVGEFMVLLSTFKASF 421 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 V LA+ +V+ A Y+LW+Y++V +G V QLK++ + ++ + + V+ GI Sbjct: 422 WVTFLAASTLVIGAAYTLWMYKRVFYGPVTTPAVAQLKEIGVTDKIIFILVTAAIVWIGI 481 Query: 468 YPVPIRDTFSVPLSSIIEN 486 YP + + F + ++ Sbjct: 482 YPNSLLNVFHASIGKLLHE 500 >gi|152993795|ref|YP_001359516.1| NADH dehydrogenase subunit M [Sulfurovum sp. NBC37-1] gi|151425656|dbj|BAF73159.1| NADH-quinone oxidoreductase, chain M [Sulfurovum sp. NBC37-1] Length = 510 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 209/476 (43%), Positives = 305/476 (64%), Gaps = 19/476 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLG--CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSI+ F P + + LG + S + ++ I F+ S+++W FD + Q Sbjct: 5 LSILVFFPAI-------AGLLGFVVDKDSARAYGITVAAIEFLLSVWLWFSFDTANAGMQ 57 Query: 64 MIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E I D+ SY+LGVDGIS+ ++++ T +T ++S SI EN + +I L LE Sbjct: 58 FVELIPIIPDFGISYYLGVDGISLFIILMATLMTLIGMMS--MSITENIKNMIITLLFLE 115 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++G F++LD ++FY+F+E SL+PM IIG WGG R+YAA KFFLYTF GS+ ML + Sbjct: 116 MTMVGVFVALDAIIFYLFWELSLVPMLYIIGAWGGPLRVYAAVKFFLYTFTGSLIMLVGM 175 Query: 183 --VVMCWEKKTS----SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 V + T +I D YA+ P + Q W++ AFF FAIK+PMFPFHTWLP AH Sbjct: 176 LFVAYVYHNLTGVWSFAITDWYALV-LPVNYQLWLFAAFFVGFAIKVPMFPFHTWLPYAH 234 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 QAPT GSV LA ++LKMG YG +RF LP+FP AS I LS++ IIY ++V+ Q Sbjct: 235 GQAPTIGSVILAAVLLKMGTYGFVRFSLPMFPDASVLAITPIAALSIVMIIYTAMVAYAQ 294 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+K++IAYSS++HMG + +GIF+ G+ G++FQMLSHG+VS ALF VGVIYDR HT Sbjct: 295 KDMKQVIAYSSVSHMGIIMLGIFAMNAEGISGSVFQMLSHGIVSGALFMLVGVIYDRRHT 354 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 + + +GGL MP+YAV+ + MA++GLP T GF+GEFLV++ +Q S + VLA Sbjct: 355 KLMSEFGGLASVMPKYAVIFGIMLMASVGLPLTIGFVGEFLVLLGFYQVSPVLTVLAGTS 414 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +++ A+Y L +Y+ FG E+ + LKDL+ +E + P+ ++ ++ G+YP P+ Sbjct: 415 IIIGAIYMLSVYKSSFFGPVTKEENKSLKDLNSKETWSLVPLVLIVIWLGVYPKPV 470 >gi|317097446|ref|YP_004123645.1| NADH dehydrogenase subunit 4 [Oscarella tuberculata] gi|308912625|gb|ADO51390.1| NADH dehydrogenase subunit 4 [Oscarella tuberculata] Length = 491 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 207/435 (47%), Positives = 284/435 (65%), Gaps = 10/435 (2%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWI----DYFCSYHL--GVDGISILLVVLTTFLTPFCIL 101 ++ +W FD G FQ + WI D + S + VDGISI ++LT L P CIL Sbjct: 47 TIILWISFD-GEGQFQATQIIEWISSTTDLWSSGMVVFAVDGISIFFIILTALLIPICIL 105 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SER 160 SW SI+ +E+++ + LE +++G F +LD+LLFYI FE LIPMF+IIG+WG E+ Sbjct: 106 ISWNSIKFLLKEFLLCLIFLEILLMGVFTALDLLLFYILFEGILIPMFLIIGIWGAREEK 165 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 + A+Y FF YT GS+FML I V+ T+ L + + Q W+++ FF S A Sbjct: 166 VLASYYFFFYTLIGSVFMLLGIFVLYSNTGTTDYQTLCGL-RLNGETQKWVFMGFFVSLA 224 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 IKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF P+ P AS+YFAP+I Sbjct: 225 IKIPKIPFHIWLPQAHVEAPCAGSVMLAGVLLKIGGYGFIRFSWPILPEASEYFAPLILT 284 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL+A+IY SL + Q D K+LIAYSS+AHMG VT+GIF+ G+ A+F ML+HGLVS Sbjct: 285 LSLLAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVTLGIFTHTIQGLVAAIFLMLAHGLVS 344 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S+LF V ++Y+R HTR I Y G+ MP +A +M++ T+AN+ +P + F+GEFL ++ Sbjct: 345 SSLFIIVTLLYERHHTRLIKYYRGMTITMPIFATIMLLMTLANIAVPLSCNFVGEFLSLL 404 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 + F+ S V VLAS G+VL A YSL+LY +V FG S + +D++ RE + P+ Sbjct: 405 AAFEYSIIVGVLASLGMVLGAAYSLYLYNRVCFGNSSNYIIFS-RDVNRREFYTLLPLVA 463 Query: 461 LTVFFGIYPVPIRDT 475 LT+ GIYP I DT Sbjct: 464 LTILMGIYPSAIIDT 478 >gi|186472800|ref|YP_001860142.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia phymatum STM815] gi|184195132|gb|ACC73096.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia phymatum STM815] Length = 511 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/488 (40%), Positives = 311/488 (63%), Gaps = 10/488 (2%) Query: 1 MNLP-FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 M+ P L ++ ++P + V+L R+ + +AL + ++ + + + + FD Sbjct: 1 MHFPSVLDLLIWVPIVAGIVVLLGGSDSARSRTRW-LALTGAAVSILPVIPLVAGFDSSL 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 ++ Q + W+ F SYHLGVDGIS+ VLT+ T +++SW+SI +Y AF Sbjct: 60 ATMQFEQQLAWLPEFGISYHLGVDGISLWFTVLTSVTTLIIVIASWESISTRVAQYYGAF 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L + G F SLD +LF++FFEA+LIP++++IG WG R+YAA +FF ++ GS+ M Sbjct: 120 LLLSGCMQGVFTSLDGMLFFVFFEATLIPLYLLIGTWGEQRRVYAAVRFFFFSLVGSLAM 179 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L +++ + W + I + K F+ Q ++I F +F++K+PM+P HTWLP+ H Sbjct: 180 LASLIYL-WAHAHTFDIATWRTLKLDFTPQLMVFIGFLAAFSVKVPMWPVHTWLPDVHSD 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 PT +V L MLKMGGYG +RF LP+ P A +FAP + LSL+A+IY SL+++ QTD Sbjct: 239 GPTGAAVLLG--MLKMGGYGLLRFALPIVPDACHFFAPAMIALSLVAVIYGSLLALAQTD 296 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 ++KL+AYS++AHMG VT+G+F+ + G EGA+ QMLS+G+VS A+ C G+++DR Sbjct: 297 MRKLLAYSAVAHMGLVTLGLFTFDRMGTEGAVVQMLSYGIVSGAMLLCTGMLFDRTRNGS 356 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I AYGG+ ++MP+ A M+F+MAN+GLPGTSGF+GEFLV+M + + V A+ ++ Sbjct: 357 IDAYGGVANSMPKLATFAMLFSMANVGLPGTSGFVGEFLVLMGAIRFNFWVGATAALTLI 416 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 LSA Y+LW+Y++V+FG K +V L+DL RE ++ +AVL + G+ P TF+ Sbjct: 417 LSAAYTLWMYKRVMFGAIKNTRVSSLRDLGRREFVLLGAMAVLVLAIGVRP----KTFTD 472 Query: 479 PLSSIIEN 486 + EN Sbjct: 473 AIGPSAEN 480 >gi|297569874|ref|YP_003691218.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfurivibrio alkaliphilus AHT2] gi|296925789|gb|ADH86599.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfurivibrio alkaliphilus AHT2] Length = 508 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 195/455 (42%), Positives = 299/455 (65%), Gaps = 8/455 (1%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKS 106 SL ++ +FD +Q E+ WI + +Y LGVDGIS+LLV++TT + P C+L SW+ Sbjct: 51 SLPLFFMFDTSTHLYQFGEHRSWIAAWDINYTLGVDGISLLLVLMTTIIMPLCVLGSWRY 110 Query: 107 IQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYK 166 I +E+M L++E+ ++G F++LD +LFYIF+EA LIPM+++I VWGG ++YA+ K Sbjct: 111 ITTRVKEFMFCLLLMETAMLGVFMALDFVLFYIFWEAMLIPMYLLIAVWGGPRKMYASIK 170 Query: 167 FFLYTFFGSIFMLFAIVVM--CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 FFLYT GS+ +L AI+ + E +T SI L F + Q W+++AFF +FAIK+P Sbjct: 171 FFLYTLAGSVLLLVAIIALFLTSEPQTFSI-PLLMEQHFSTTFQIWVFLAFFLAFAIKVP 229 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 MFPFHTWLP AHV+APTAGSV LA ++LKMG YG +RF LP+ P A+ F P I +LS+I Sbjct: 230 MFPFHTWLPAAHVEAPTAGSVILASVLLKMGTYGFLRFCLPITPEATFIFMPYILWLSII 289 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 I+Y ++ Q D+KKLIAYSS+ HMG+VT+GIF G+EG++ QM++HG+ + ALF Sbjct: 290 GILYGGFTALAQQDMKKLIAYSSVGHMGFVTLGIFVLNAQGIEGSILQMVNHGITTGALF 349 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 FCVG++Y+R H+R++ G+ MP Y + + F+++++ PGT+ F+GEF+++ F+ Sbjct: 350 FCVGMLYERTHSRELVLNAGVGKLMPIYVIFLGFFSLSSLAFPGTNSFVGEFMILAGGFE 409 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 S +A A G VL+A Y L ++VV+G + + L DL+ RE ++ P+ + + Sbjct: 410 RSILIAAFAIPGAVLAAAYMFRLLQRVVWGGTDNPRHTGLTDLNAREIVILAPLLLFVFW 469 Query: 465 FGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSVKG 499 G+ P P V ++ ++E + G + +G Sbjct: 470 IGLSPGPFLAVMEVSVAHLLE----QVGMAAQTEG 500 >gi|330994148|ref|ZP_08318076.1| NADH-quinone oxidoreductase chain 13 [Gluconacetobacter sp. SXCC-1] gi|329758615|gb|EGG75131.1| NADH-quinone oxidoreductase chain 13 [Gluconacetobacter sp. SXCC-1] Length = 513 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 205/486 (42%), Positives = 314/486 (64%), Gaps = 3/486 (0%) Query: 5 FLSIVTFLPFLGVFVILFS-SYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS+VT+LP +GV IL + + VAL S I F ++ +W FD R Q Sbjct: 12 LLSLVTYLPLVGVVAILLTRGTPQTVETAARWVALWTSGIVFALAVVMWVEFDPTRPGIQ 71 Query: 64 MIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + W SYH GVDGIS++ V+L+ FLTP I+ W+ I R+YMIA L+LE Sbjct: 72 FAQQVGWASGAGISYHAGVDGISLMFVLLSAFLTPLSIIGGWRQITGRVRDYMIAMLLLE 131 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + +IG F +LDM+LFY+F+EA+L+P +++GVWGG +R++A+ +FFL+TF GS+FML Sbjct: 132 TTLIGLFSALDMVLFYVFYEATLLPASLMVGVWGGPKRVWASLQFFLFTFGGSLFML-LA 190 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 ++ W ++ I F ++Q W+ F +F +K+P+FP H WLP+A+ +APT Sbjct: 191 LLAMWNVTGTTDIMALQHHGFSHAMQCWLLAGFILAFGVKLPLFPLHAWLPDAYTEAPTT 250 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 SV L+G++ K G YG +RF + +FP A++ FAPV+ L +IA+IYA+++++ QTD+K++ Sbjct: 251 ASVMLSGVLSKAGAYGLLRFGVLMFPDAARLFAPVVLTLGVIAVIYAAIIALAQTDMKRV 310 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS +HMG + IG+F+ G++GA+FQMLSHG+V +ALFFCV + R TR+I A+ Sbjct: 311 IAYSSFSHMGVIAIGLFTMTPEGIDGAIFQMLSHGIVIAALFFCVSAVSWRAETREISAF 370 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G+ H MP A + M+F MAN+GLPGT F+GEFLV++ S +A L ++L A+ Sbjct: 371 SGVAHRMPVLATLAMLFVMANIGLPGTGAFVGEFLVMVGALHVSFWLAFLGGTSMILGAV 430 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y L LYR+V+FG + V L+DL+ +E ++ P+A++TV+ G++P F ++ Sbjct: 431 YMLVLYRRVLFGADRGGVVALLRDLTGQELAVLVPLAIVTVWMGVHPNSFLRVFDPAVTG 490 Query: 483 IIENYT 488 ++ T Sbjct: 491 LLHPVT 496 >gi|260223132|emb|CBA33390.1| NADH-quinone oxidoreductase subunit M [Curvibacter putative symbiont of Hydra magnipapillata] Length = 491 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/452 (42%), Positives = 306/452 (67%), Gaps = 1/452 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 VAL + ++ + +L ++ FD ++ Q +E WI+ F +YHLG+DGIS V LT F Sbjct: 33 VALIGAVVSLLLTLPLYGQFDNSTAAMQFVENVPWIERFNVNYHLGLDGISFWFVPLTAF 92 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T ++++W+ I + +YM AFL+L ++IG F +LD +LFY+FFEA+LIPM++IIG+ Sbjct: 93 ITVIVVIAAWEVITQRVNQYMGAFLILSGLMIGVFSALDGMLFYVFFEATLIPMYLIIGI 152 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 WGG +IYAA+KFFLYT GS+ ML A++ + + S + + + Q ++ A Sbjct: 153 WGGPNKIYAAFKFFLYTLLGSLLMLIALIFLYTQSGGSFELAKWHALPLGQTAQTLLFFA 212 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF +FA+K+PM+P HTWLP+ HV+APT GS LA IMLK+G YG +RF +P+ P A+ + Sbjct: 213 FFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDAAHAY 272 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 + LSLIA++Y LV+MVQ D+KKL+AYSS+AHMG+VT+G F GV G + QM+ Sbjct: 273 GGFMVALSLIAVVYVGLVAMVQQDMKKLVAYSSVAHMGFVTLGFFIFNDLGVSGGLVQMI 332 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HG VS A+F +GV+YDR+H+R+I +YGG+V+ MP++A ++F MAN GLPGT+GF+G Sbjct: 333 AHGFVSGAMFLSIGVLYDRVHSREIASYGGVVNTMPKFAAFALLFAMANCGLPGTAGFVG 392 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 E++VI+ + + + A+ ++ A Y+LW++++V G + V++L D++ RE M Sbjct: 393 EWMVILGAVKFNFWIGFAAASALIFGAAYTLWMFKRVYLGPVTNDDVKELTDINAREFLM 452 Query: 455 VYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + +A+ + G+YP P D V ++ ++++ Sbjct: 453 LGLLAIAVLAMGLYPKPFTDVMDVSVAELLKH 484 >gi|291010621|ref|YP_003495127.1| NADH dehydrogenase subunit 4 [Pycnococcus provasolii] gi|258406744|gb|ACV72090.1| NADH dehydrogenase subunit 4 [Pycnococcus provasolii] Length = 484 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 216/483 (44%), Positives = 309/483 (63%), Gaps = 6/483 (1%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 +L I+ PF+ F +L S+ ++ VAL + + SLF W D Q Sbjct: 3 WLEILILFPFITSFSLLIISFTEAQKKL---VALWGALVPLPISLFAWVGLDHANFQLQN 59 Query: 65 IEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 I Y + S LG+DG+S LV LT FL P CIL+ W+ I+ EY++++L+LE Sbjct: 60 IICYSVLPGTNSEVVLGLDGLSAPLVSLTCFLCPLCILAGWQVIRVGVTEYLVSWLLLEG 119 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAI 182 +++ F + D+L+FYI FEA+LIP+FV+IG+WG R + AAY+ FLYT FGS+FML A+ Sbjct: 120 LLVAVFTTFDLLVFYILFEATLIPIFVMIGIWGSRLRKVKAAYQLFLYTLFGSVFMLLAL 179 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 +++ + + S + S F Q ++++FF +F IKIPM P H WLP AHV+APT Sbjct: 180 LLI-FAQVGSFDYGVLIASNFSIERQLLLFLSFFLAFGIKIPMVPIHLWLPEAHVEAPTG 238 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LAGI+LK+GGYG +R+ LPLF A ++ P++ +SL+ I+YAS ++ Q D+KK Sbjct: 239 GSVILAGILLKLGGYGFLRYTLPLFSEAVLFYTPLVHTVSLLGILYASFTTLRQIDMKKA 298 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSSIAH+G VT+GIFSG G+ G+ +L HG+VS LF C+GV+YDR TR + Y Sbjct: 299 IAYSSIAHIGVVTLGIFSGNLMGLVGSCVLILGHGVVSPGLFLCIGVLYDRYKTRLVRYY 358 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGL MP ++ V + F++AN+GLPGT+ F+GEFL FQ++N+ AVLA G++ SA Sbjct: 359 GGLAQVMPLFSAVFLFFSIANLGLPGTANFVGEFLCFSGCFQSNNSAAVLACSGMISSAA 418 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 YSLWL+ ++ FG K Q+ DL+ RE M P+ +T++ G YP P+ VPLS Sbjct: 419 YSLWLFCRISFGTLKTVSFLQVADLNRREFFMFAPLVFITLWVGFYPKPVISLLFVPLSC 478 Query: 483 IIE 485 I+E Sbjct: 479 ILE 481 >gi|218673582|ref|ZP_03523251.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli GR56] Length = 471 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/438 (44%), Positives = 288/438 (65%), Gaps = 3/438 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 +AL ++ ++ + + FD + Q E W+ +Y LGVDGIS L V LT Sbjct: 12 MALAVTVLDLALCIAMLVGFDTTTHAMQFTETRPWVPALGITYTLGVDGISALFVFLTAL 71 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L C+L+SW +I +E+M++ L +E++++G F +LD+ LFY+F+EA LIPM++IIGV Sbjct: 72 LGSTCVLASWVAIDRKVKEFMVSLLAMEALMLGVFCALDLFLFYVFWEAMLIPMYLIIGV 131 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK-KTSSIIDLYAMSKFPFSIQYWMWI 213 WGG R+YAA+KFFLYT GS+ L ++V+ + +T +I+ L A PF +Q W++ Sbjct: 132 WGGDGRVYAAFKFFLYTLAGSVLFLVGVIVLYFNGGETFNILALTA-QDLPFRVQSWLFF 190 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AF +FA+K+PM P HTWLP+AHVQAPTAGS+ LAG++LKMG YG +RF LP+ P AS Y Sbjct: 191 AFLVAFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFLRFSLPMLPEASVY 250 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 ++ ++ LS +AI+Y L+++ Q D+KKL+AYSSI+HMG+VT+GIF+ G+EG + QM Sbjct: 251 YSTLMLSLSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFALNLRGLEGGILQM 310 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +HG+ + ALF VG+IY+R HTR I YGGL+ P Y + +F +++M LPGT+ F+ Sbjct: 311 FNHGVTTGALFLFVGLIYERTHTRSIADYGGLMKTAPVYTTFLALFILSSMALPGTNSFV 370 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GE LV+ F + V A G +L A Y L +Y KV G + +++D++ RE Sbjct: 371 GELLVLSGGFAANLAVGAAAVLGALLGAAYLLGMYGKVALGPASVTARFKIRDVNAREIA 430 Query: 454 MVYPIAVLTVFFGIYPVP 471 + P+ V ++ G+YP P Sbjct: 431 AILPLTVFVLWVGLYPKP 448 >gi|320353970|ref|YP_004195309.1| NADH dehydrogenase subunit M [Desulfobulbus propionicus DSM 2032] gi|320122472|gb|ADW18018.1| NADH dehydrogenase subunit M [Desulfobulbus propionicus DSM 2032] Length = 501 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 209/470 (44%), Positives = 311/470 (66%), Gaps = 4/470 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M++P LS + F P LG +L +AL +S + + +L V +FDK + Sbjct: 1 MSIPLLSTLIFFPVLGGLSLLIVPRQQTATIRL--MALFVSLVELLLTLPVVLLFDKTTA 58 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q E + WI +Y LG+DGISIL ++LT +T +L SW++I + +E+ +A L Sbjct: 59 RMQFTELHPWISTLNINYSLGIDGISILFLLLTALITLLSVLVSWEAIHDKVQEFFVALL 118 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE ++G F +LD LFYIF+EA LIPMF+IIG+WGG RIYA KFFLYT GS+ ML Sbjct: 119 LLEGAMMGVFCALDFFLFYIFWEAMLIPMFLIIGIWGGPNRIYATVKFFLYTLVGSLLML 178 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 I+++ + I A + +Q ++ AFF +FA+K+PM+P HTWLP+AH +A Sbjct: 179 VGIILLYQNGGHTFDILKLAGQNYSLKLQLILFWAFFAAFAVKVPMWPVHTWLPDAHTEA 238 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGSV LAG+++KMG YG +RF LP+ P A+Q + LS+IAI+Y +++ + QTD+ Sbjct: 239 PAAGSVILAGVLIKMGAYGFLRFSLPILPEATQQMLVPMLVLSVIAIVYGAIICLAQTDL 298 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+LIAYSS++HMG+VT+G+F+ + G+EGA+ QM++HG+V+ ALF +G+IY+R HTR+I Sbjct: 299 KRLIAYSSVSHMGFVTLGLFALNQRGLEGAILQMINHGVVTGALFLAIGMIYERTHTREI 358 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGGL MP +A ++FT+A +GLPGT+GFIGEFL+++ F+ + AV+A+ G++L Sbjct: 359 SAYGGLATTMPVFAGFFLLFTLAAVGLPGTNGFIGEFLILLGGFERAPWAAVVAASGLIL 418 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A Y LWLY+++ F + L L+LRE + P+ VL + G+YP Sbjct: 419 GAWYMLWLYQRIFFN-EVSTSLHGLTQLNLREILTLTPMVVLIFWIGLYP 467 >gi|296156348|ref|ZP_06839187.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. Ch1-1] gi|295893854|gb|EFG73633.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. Ch1-1] Length = 518 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/497 (40%), Positives = 316/497 (63%), Gaps = 5/497 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M LP LS++ ++P + V+L + R+ + +AL + F+ + + S F + Sbjct: 1 MPLPLLSLLIWIPIVAGLVVLRAGSDAARSRTRW-LALAGAVAGFLPVIPLVSNFRNDVT 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q +E W F ++H+GVDGIS+ LV LT T +++SW+SI E +Y AFL Sbjct: 60 SMQFVENVRWSPTFDIAWHVGVDGISLWLVALTALTTIIIVVASWESITERTAQYFGAFL 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L + G F SLD +LF+I FEA+LIP++++IG WG + R YAA KFF +F GS+ ML Sbjct: 120 MLSGFMQGVFASLDGMLFFISFEATLIPLYLLIGTWGQTNRTYAAVKFFFVSFLGSLMML 179 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + + + L+ + Q +++ F +F +K+PM+P HTWLP+ H+ Sbjct: 180 MSMLYLYSQTHSFDLA-LWRETHLGTWPQVLIFLGFLAAFGVKVPMWPLHTWLPDVHLDG 238 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT +V + MLK+GGYG +RF LP+ P AS +FAP++ LSL+A+IYASL+++VQTD+ Sbjct: 239 PTGAAVMIG--MLKLGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYASLLALVQTDM 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 ++L+AYS++AHMG VT+G+F + G GA+ QMLS+G+VS A+ C G++YDR T I Sbjct: 297 RRLLAYSTVAHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVSGAMLLCTGMLYDRTKTASI 356 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGG+ + MPR+A +M+F+MAN+GLPGTSGF+GEF+V+M + + + +A+ ++L Sbjct: 357 AEYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGTIRFNFWIGAIAASTLIL 416 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+Y++V+FG +V LKDL RE ++ +A+L + GI P P D Sbjct: 417 SAAYTLWMYKRVIFGAIANARVANLKDLGKREFVLLGAMALLVLAIGIDPKPFTDAIDPS 476 Query: 480 LSSIIENYTLKTGYSDS 496 + +++ SD+ Sbjct: 477 VGTLLAQSERPVHPSDT 493 >gi|329114387|ref|ZP_08243149.1| NADH-quinone oxidoreductase subunit M [Acetobacter pomorum DM001] gi|326696463|gb|EGE48142.1| NADH-quinone oxidoreductase subunit M [Acetobacter pomorum DM001] Length = 505 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/467 (43%), Positives = 304/467 (65%), Gaps = 4/467 (0%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS++T+LP + V F+ + S V L S I S+ +W FD + Q Sbjct: 5 LLSLITYLPLVAALVAFFAPGRPEQQDSTARWVGLWSSLITLGLSVLMWLEFDPTQPGLQ 64 Query: 64 MIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 W+ DY SYH GVDGIS++ ++LT FLTP + + W+S+Q R+++ A L LE Sbjct: 65 FETRLRWMGDYGISYHTGVDGISLVFILLTAFLTPLALGAGWRSVQTQGRQFVAAMLALE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + + G F + DMLLFY+F+EA+LIP ++IGVWGG +R++A+ +FFL+TF GS+FML + Sbjct: 125 TALFGLFSAQDMLLFYVFYEATLIPGSLMIGVWGGPKRVWASLQFFLFTFGGSLFMLVGL 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + M + T+ I L + F +Q W+ +AF +F +K+P+FP H WLP+A+ +APT Sbjct: 185 ITMWLQTGTTDIPALM-HAGFSQPLQGWLLLAFLLAFGVKLPLFPLHAWLPDAYSEAPTP 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 S L+G++ K G YG +RF + +FP A + FAP + L ++AIIYA+ V+ QTD+K++ Sbjct: 244 ASAMLSGVLSKTGAYGLLRFGVLMFPDAVRLFAPYVLALGVVAIIYAAFVAFAQTDMKRV 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS +HMG + +G+F+ G++GA+FQMLSHG+V +ALFFCV + R T+ I A Sbjct: 304 IAYSSFSHMGMIAVGLFTLTAEGIDGAIFQMLSHGVVIAALFFCVAAVAWRAETQQIDAL 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GG+ MP A++ M+FTMAN+GLPGT F+GE LV+M S VA+LA +++ A+ Sbjct: 364 GGVARQMPVLALLAMLFTMANVGLPGTGSFVGELLVLMGAVHVSFWVALLAGSTMIMGAV 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Y L LYR+V+FG K V L+DL+ E ++ P+A++T++ G++P Sbjct: 424 YMLSLYRRVLFGGVKG-TVSLLRDLTAAEIAVLAPLAIVTLWMGVHP 469 >gi|15131107|emb|CAC48233.1| NADH dehydrogenase subunit 4 [Takakia lepidozioides] Length = 418 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/403 (49%), Positives = 268/403 (66%), Gaps = 3/403 (0%) Query: 69 HWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 W+ Y ++H+G+DGIS+ VVLTTFL P I W SI+ +EYMIAFL+ ES +I Sbjct: 3 RWLPYSNINFHIGIDGISLFSVVLTTFLIPIRIPVGWSSIKSYKKEYMIAFLIRESFMIA 62 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMC 186 F D+LL Y+F E+ LIPMF+IIGVWG R I AAY+FFLYT GS+FML AI+ + Sbjct: 63 VFRMPDLLLSYVFLESVLIPMFIIIGVWGSRRRKIRAAYQFFLYTLLGSVFMLLAILFIF 122 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + T+ + + ++F Q +WIAFF S ++K+PM P H LP AHV+APTAGSV Sbjct: 123 SQTGTTD-LQILLTTEFSERRQILLWIAFFASLSVKVPMVPVHIRLPEAHVEAPTAGSVI 181 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAGI+LK+G YG RF +P+FP A+ + P I+ S+IAIIY SL ++ Q D+KK+IA+S Sbjct: 182 LAGILLKLGTYGFSRFSIPMFPEATPHSTPFIYTPSVIAIIYTSLTTIRQIDLKKIIAHS 241 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 +AHM +VTIG+FS G+EG++ M SHG V SAL VG YDR TR + YGGLV Sbjct: 242 PVAHMNFVTIGMFSPNIQGIEGSILPMSSHGPVPSALSPRVGAPYDRHKTRLVKYYGGLV 301 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP + + + T+ANM PGTS FIGEFL+++ FQ ++ VA LA+ G++L A YSLW Sbjct: 302 STMPMFPTIPLFSTLANMSSPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLW 361 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Y +V+FG K +Q+ DL+ RE + P V + G+YP Sbjct: 362 PYNRVIFGNFKPNFLQKFSDLNRREVLIFLPFIVGVIRMGVYP 404 >gi|220915562|ref|YP_002490866.1| proton-translocating NADH-quinone oxidoreductase, chain M [Anaeromyxobacter dehalogenans 2CP-1] gi|219953416|gb|ACL63800.1| proton-translocating NADH-quinone oxidoreductase, chain M [Anaeromyxobacter dehalogenans 2CP-1] Length = 542 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 205/495 (41%), Positives = 317/495 (64%), Gaps = 12/495 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD--KG 58 MNL L++VTFLP LG ++ + +AL S + F SL +W FD G Sbjct: 1 MNL--LTVVTFLPLLGALAMVLVPRDEPSQHR--ALALVASLVTFALSLGLWFGFDASPG 56 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 FQ W+ +H+G+DG+++LL +LTT L P +LS+WK++ + +E+MIA Sbjct: 57 APEFQFELMVPWMPTIGIGFHVGIDGVALLLFMLTTVLMPVVVLSAWKAVGDRVKEFMIA 116 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 LVLES ++G F++LD++LFY+F+EA LIPM+++IG+WG R+YA KFF+YTF S+ Sbjct: 117 LLVLESAMLGTFIALDLVLFYVFWEAMLIPMYLLIGIWGSQNRLYATVKFFVYTFAASVL 176 Query: 178 MLFAIV-VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML AI+ V + T ++ W+++AF +FA+K+PMFP HTWLP+AH Sbjct: 177 MLLAILYVYFHDGGTFDYVEARRALAVTPGAASWLFLAFALAFAVKVPMFPLHTWLPDAH 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +APTAGSV LAG++LKMG +G R+ LPLFP A+ ++ L++I IIY +L+S+VQ Sbjct: 237 TEAPTAGSVILAGVLLKMGTFGFFRYALPLFPEAALQHRNLVAVLAVIGIIYGALMSLVQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K+L+AYSS++H+G+V +G+ + G+ G+++QML+HG+ + ALF VG++Y+R HT Sbjct: 297 TDMKRLVAYSSVSHLGFVMLGLMALSAEGMTGSVYQMLNHGVSTGALFLLVGMLYERRHT 356 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI----MSVFQNSNTVAVL 412 R I YGG+ +P A ++ T++++GLPGT+GF+GEFL++ +S S A + Sbjct: 357 RLISEYGGIAKRVPVIAAAFVIVTLSSIGLPGTNGFVGEFLILSGTWLSRLGGSAVFATV 416 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+L A+Y L L KV FG ++ + +L DLS+RE ++ P+ L V G+ P P Sbjct: 417 AALGVILGAVYMLLLVEKVFFGPNQNPQNHRLPDLSVREGFVLAPMIALIVVMGLLPGPF 476 Query: 473 RDTFSVPLSSIIENY 487 + +I+ + Sbjct: 477 LAPAKPAVDRLIQRF 491 >gi|218462136|ref|ZP_03502227.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli Kim 5] Length = 463 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 192/438 (43%), Positives = 288/438 (65%), Gaps = 3/438 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 +ALG++ ++ + + FD + Q E W+ +Y LG+DGIS L V LT Sbjct: 4 MALGVTVLDLALCIAMLVGFDTTTHAMQFTETRPWVPALGITYALGIDGISALFVFLTAL 63 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L C+L+SW +I +E+M++ L +E++++G F +LD+ LFY+F+EA LIPM++IIGV Sbjct: 64 LGSTCVLASWVAIDRKVKEFMVSLLAMEALMLGVFCALDLFLFYVFWEAMLIPMYLIIGV 123 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK-KTSSIIDLYAMSKFPFSIQYWMWI 213 WGG R+YAA+KFFLYT GS+ L ++V+ + +T I+ L A PF +Q W++ Sbjct: 124 WGGDGRVYAAFKFFLYTLAGSVLFLVGVIVLYFSGGETFDILALTA-QDLPFRVQSWLFF 182 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AF +FA+K+PM P HTWLP+AHVQAPTAGS+ LAG++LKMG YG +RF LP+ P AS Y Sbjct: 183 AFLVAFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFLRFSLPMLPEASVY 242 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 ++ ++ LS +AI+Y L+++ Q D+KKL+AYSSI+HMG+VT+GIF+ G+EG + QM Sbjct: 243 YSTLMLSLSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFALNLRGLEGGILQM 302 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +HG+ + ALF VG+IY+R HTR I YGGL+ P Y + +F +++M LPGT+ F+ Sbjct: 303 FNHGVTTGALFLFVGLIYERTHTRSIADYGGLMKAAPVYTAFLALFILSSMALPGTNSFV 362 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GE LV+ F + V A G +L A Y L +Y KV G + +++D++ RE Sbjct: 363 GELLVLSGGFAANPAVGAAAVLGALLGAAYLLGMYGKVALGPASVSARFKMRDVNARELA 422 Query: 454 MVYPIAVLTVFFGIYPVP 471 + ++V ++ G+YP P Sbjct: 423 AILSLSVFVLWVGLYPKP 440 >gi|41203466|ref|NP_957726.1| NADH dehydrogenase subunit 4 [Emiliania huxleyi] gi|33114152|gb|AAP94708.1| NADH dehydrogenase subunit 4 [Emiliania huxleyi] Length = 478 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 202/414 (48%), Positives = 285/414 (68%), Gaps = 4/414 (0%) Query: 41 STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL-GVDGISILLVVLTTFLTPFC 99 S I F S++++ FD + FQ W++ ++ + G+DG+++L+++LT FL P C Sbjct: 35 SLILFNSSIYLYLTFDPTTTKFQCTNKIEWLNVANNHFVFGIDGLALLMILLTAFLIPIC 94 Query: 100 ILSSWKSIQENF-REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS 158 I+ SWK +EY+I FL LES++ G F SLD+L+FYI FEA LIPM+ +IGV+G Sbjct: 95 IMLSWKLKNPLLTKEYVIIFLSLESILNGVFSSLDLLVFYILFEAVLIPMYFLIGVFGSR 154 Query: 159 ER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFC 217 ER I A+Y FLYT F SI M AI+ + + T++ + L PF+ + W+AFF Sbjct: 155 ERKIKASYLLFLYTLFSSIIMFIAILFLYSKFGTTNYLILAMFDLDPFT-EKLCWLAFFF 213 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 SFA+K+PM PFH WLP AH +APTAGS+ LAGI+LK+GGYG +RF L LFP AS +F P Sbjct: 214 SFAVKMPMIPFHVWLPEAHCEAPTAGSILLAGILLKLGGYGFLRFSLVLFPNASAFFTPF 273 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +F LSL+ +IYAS+ ++ Q D+KK+IAYSS++HMG VTIGIFS G+ G++F M+ HG Sbjct: 274 VFLLSLVGVIYASVSTLQQVDLKKIIAYSSVSHMGLVTIGIFSNNIQGIIGSVFLMIGHG 333 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 + SSALF VG++YDR TR + YGGL + MP +A ++F+MAN+GLP TS FIGEF Sbjct: 334 VTSSALFLAVGLLYDRYGTRVVKYYGGLANTMPLFASCFLLFSMANIGLPITSNFIGEFF 393 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 +++ F+ ++ +A LA FGVVLSA YSLWL +++FG K + +DL+ +E Sbjct: 394 CLVACFKINSLIAFLAGFGVVLSAGYSLWLSNRILFGNLKQTSITVFRDLNRKE 447 >gi|197120862|ref|YP_002132813.1| proton-translocating NADH-quinone oxidoreductase, chain M [Anaeromyxobacter sp. K] gi|196170711|gb|ACG71684.1| proton-translocating NADH-quinone oxidoreductase, chain M [Anaeromyxobacter sp. K] Length = 542 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 205/495 (41%), Positives = 316/495 (63%), Gaps = 12/495 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD--KG 58 MNL L++VTFLP LG ++ + +AL S + F SL +W FD G Sbjct: 1 MNL--LTVVTFLPLLGALAMVLVPRDEPSQHR--ALALVASLVTFALSLGLWFGFDASPG 56 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 FQ W+ +H+G+DG+++LL +LTT L P +LS+WK++ + +E+MIA Sbjct: 57 APEFQFELMVPWMPTIGIGFHVGIDGVALLLFMLTTVLMPVVVLSAWKAVGDRVKEFMIA 116 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 LVLES ++G F++LD++LFY+F+EA LIPM+++IG+WG R+YA KFF+YTF S+ Sbjct: 117 LLVLESAMLGTFIALDLVLFYVFWEAMLIPMYLLIGIWGSQNRLYATVKFFVYTFAASVL 176 Query: 178 MLFAIV-VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML AI+ V + T ++ W+++AF +FA+K+PMFP HTWLP+AH Sbjct: 177 MLLAILYVYFHDGGTFDYVEARRALAVTPGAASWLFLAFALAFAVKVPMFPLHTWLPDAH 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +APTAGSV LAG++LKMG +G R+ LPLFP A+ ++ L++I IIY +L+S+VQ Sbjct: 237 TEAPTAGSVILAGVLLKMGTFGFFRYALPLFPEAALQHRNLVAVLAVIGIIYGALMSLVQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K+L+AYSS++H+G+V +G+ + G+ G+++QML+HG+ + ALF VG++Y+R HT Sbjct: 297 TDMKRLVAYSSVSHLGFVMLGLMALSAEGMTGSVYQMLNHGVSTGALFLLVGMLYERRHT 356 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI----MSVFQNSNTVAVL 412 R I YGG+ +P A ++ T++++GLPGT+GF+GEFL++ +S S A + Sbjct: 357 RLISEYGGIAKRVPVIAAAFVIVTLSSIGLPGTNGFVGEFLILSGTWLSRLGGSAVFATV 416 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+L A+Y L L KV FG ++ + L DLS+RE ++ P+ L V G+ P P Sbjct: 417 AALGVILGAVYMLLLVEKVFFGPNQNPQNHHLPDLSVREGFVLAPMIALIVVMGLLPGPF 476 Query: 473 RDTFSVPLSSIIENY 487 + +I+ + Sbjct: 477 LAPAKPAVDRLIQRF 491 >gi|54606766|dbj|BAD66789.1| NADH dehydrogenase subunit 4 [Beta vulgaris subsp. vulgaris] Length = 477 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 215/482 (44%), Positives = 300/482 (62%), Gaps = 21/482 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + P LG +LF RS + L S I F++S + FD + Q + Sbjct: 12 LSGLILCPVLGSITLLFIP--NSRIRSIRLIGLCASLITFLYSPVLRIQFDPSTAKSQFV 69 Query: 66 EYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E W+ Y ++LG+DGIS+ V+LTTFL P CIL W ++ +EY+ A L+ E + Sbjct: 70 ESLRWLPYENIHFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYITASLIREFL 129 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 +I F LD+LLFY+ E+ IPM FFLYT GS+FML AI++ Sbjct: 130 MIAVFCMLDLLLFYVLSESVPIPML-----------------FFLYTLLGSVFMLLAILL 172 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + + T+ + + ++F Q ++WIAFF SFA+K+PM P H WLP AHV+APTAGS Sbjct: 173 ILLQTGTTDL-QILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGS 231 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 V LAGI+LK+G YG +RF +P+FP A+ F P I+ LS IAIIY SL ++ Q D+KK+IA Sbjct: 232 VILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIA 291 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+AHM +VTIG+FS G+ G++ MLSHGLVSSALF CVGV+YDR TR + YGG Sbjct: 292 YSSVAHMNFVTIGMFSLNIQGIGGSILPMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGG 351 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 LV MP ++ + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A YS Sbjct: 352 LVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYS 411 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 LWLY +VV G K + + + D + RE + P V V+ G++P D +S+++ Sbjct: 412 LWLYNRVVSGNLKPDFLHKFSDPNGREVFIFIPFLVGVVWMGVHPKVFPDRMHTSVSNLV 471 Query: 485 EN 486 ++ Sbjct: 472 QH 473 >gi|148285167|ref|YP_001249257.1| NADH dehydrogenase subunit M [Orientia tsutsugamushi str. Boryong] gi|146740606|emb|CAM81260.1| NADH dehydrogenase I chain M [Orientia tsutsugamushi str. Boryong] Length = 482 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 206/431 (47%), Positives = 291/431 (67%), Gaps = 2/431 (0%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD ++Q +E Y +YH+G+DGISI + LT LT I+ S ++Q+ + Sbjct: 46 FDNTAHTYQFVELYSIFKLIGLNYHVGIDGISIFFIALTALLTLLSIVISIFTVQKKLED 105 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 ++ FL++ES+VIGAF S+++LLF++FFEASL P+F++IG+WG S RIYAA KFFLY+F Sbjct: 106 NLLCFLLIESLVIGAFSSMNLLLFFMFFEASLFPIFLLIGIWGSSNRIYAALKFFLYSFV 165 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYA-MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 GS+F L AI+ + T I +LY M +F S+Q +W++ F +FAIKIPM P H+WL Sbjct: 166 GSVFFLVAIIYIHTYTGTLEITELYDLMPRFDISVQMLLWLSIFVAFAIKIPMLPLHSWL 225 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHV+A T GSV LAGI+LK+GG+G +R LP+ P ASQ F+ + S+ AIIY S++ Sbjct: 226 PDAHVEAQTGGSVMLAGILLKLGGFGLLRICLPMLPAASQKFSSIAMIFSVAAIIYFSII 285 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q DIKK IAYSSIAHMGYVT+GIFS G++GA+FQMLSHGL+S ALF +G++YD Sbjct: 286 AFQQIDIKKAIAYSSIAHMGYVTVGIFSLNTYGIQGAIFQMLSHGLISPALFMIIGILYD 345 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R HTR+I YGGL M + A + M + ++G+PGTSGFIGEFLV++ S + Sbjct: 346 RTHTREIRFYGGLAVKMTKLASIFMAAVLGSIGVPGTSGFIGEFLVLLGAITASPLIGSF 405 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A GV+L A+Y L LYR+++ G ++V QL D+ L E+ V P+ V G+YP + Sbjct: 406 AILGVLLGAVYMLSLYRRIMLGEITNQRVYQLNDILLSEKVAVLPLIVAMFIIGVYPKFV 465 Query: 473 RDTFSVPLSSI 483 + +P ++ Sbjct: 466 LNILLIPAKNL 476 >gi|21450016|ref|NP_659278.1| NADH dehydrogenase subunit 4 [Laminaria digitata] gi|21425341|emb|CAC87974.1| NADH dehydrogenase subunit 4 [Laminaria digitata] Length = 483 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 214/438 (48%), Positives = 294/438 (67%), Gaps = 12/438 (2%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 AL I++ F+ SLF+W FD+ FQ + W+ + LGVDGIS+ ++LTT + Sbjct: 32 ALAITSAVFVSSLFLWLGFDQSTPKFQFVVDSLWLPLANINLILGVDGISLFFIILTTLI 91 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P C+L+SW + + Y+I+FL +E +++ F +LD+L FYIFFEA LIPMF++IG++ Sbjct: 92 FPLCLLASWSFNKGEVKPYLISFLGMELVLLLVFTNLDLLFFYIFFEAVLIPMFLVIGIY 151 Query: 156 GGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMW 212 G ER I AAY FFLYT GS+FML I+ + ++ + A+S FS Q W+W Sbjct: 152 GSRERKIRAAYMFFLYTLLGSLFMLIGIIYIYLFAGST---NYEALSVINFSSYDQKWLW 208 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG-SVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 AFF SFA K+PM P H WLP AHV+APTAG + LAGI+LK+G YG +RF L LFPLAS Sbjct: 209 FAFFASFAAKVPMLPVHIWLPEAHVEAPTAGFKIILAGILLKLGSYGFLRFSLGLFPLAS 268 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 YF P IF LSL+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G GVE A+ Sbjct: 269 VYFTPFIFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGVEAAIL 328 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 Q LSHG VSSALF +GV+YDR H+R + YGGL H MP + ++ + FTMAN+GLPGTS Sbjct: 329 QRLSHGFVSSALFLIIGVLYDRWHSRVVKYYGGLTHTMPIFIIIFLFFTMANLGLPGTSS 388 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 FIGEFL+++S F+ ++T A+ ++L YSLWL+ ++ +G K DLS RE Sbjct: 389 FIGEFLLLVSAFEANSTACFFAATSMILGGGYSLWLFNRIAYGNIKMIGF----DLSFRE 444 Query: 452 RCMVYPIAVLTVFFGIYP 469 + P+ + T+F GIYP Sbjct: 445 FMVFLPLVLGTLFMGIYP 462 >gi|91778469|ref|YP_553677.1| proton-translocating NADH-quinoneoxidoreductase, chain M [Burkholderia xenovorans LB400] gi|91691129|gb|ABE34327.1| NADH dehydrogenase subunit M [Burkholderia xenovorans LB400] Length = 518 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/497 (40%), Positives = 316/497 (63%), Gaps = 5/497 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M LP LS++ ++P + ++L + R+ + +AL + F+ + + S F + Sbjct: 1 MPLPLLSLLIWIPIVAGLIVLRAGSDAARSRTRW-LALAGAVAGFLPVIPLVSNFRNDVT 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q +E W F ++H+GVDGIS+ LV LT T +++SW+SI E +Y AFL Sbjct: 60 SMQFVENVRWSPTFDIAWHVGVDGISLWLVALTALTTIIIVVASWESITERTAQYFGAFL 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L + G F SLD +LF+I FEA+LIP++++IG WG S R YAA KFF +F GS+ ML Sbjct: 120 MLSGFMQGVFASLDGMLFFISFEATLIPLYLLIGTWGQSNRTYAAVKFFFVSFLGSLMML 179 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + + + L+ + Q +++ F +F +K+PM+P HTWLP+ H+ Sbjct: 180 MSMLYLYSQTHSFDLA-LWRETHLGTWPQVLIFLGFLAAFGVKVPMWPLHTWLPDVHLDG 238 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT +V + MLK+GGYG +RF LP+ P AS +FAP++ LSL+A+IYASL+++VQTD+ Sbjct: 239 PTGAAVMIG--MLKLGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYASLLALVQTDM 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 ++L+AYS++AHMG VT+G+F + G GA+ QMLS+G+VS A+ C G++YDR T I Sbjct: 297 RRLLAYSTVAHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVSGAMLLCTGMLYDRTKTASI 356 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGG+ + MPR+A +M+F+MAN+GLPGTSGF+GEF+V+M + + + +A+ ++L Sbjct: 357 AEYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGTIRFNFWIGSIAASTLIL 416 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+Y++V+FG +V LKDL RE ++ +A+L + GI P P D Sbjct: 417 SAAYTLWMYKRVIFGAIANARVANLKDLGKREFVLLGAMALLVLAIGIDPKPFTDAIDPS 476 Query: 480 LSSIIENYTLKTGYSDS 496 + +++ SD+ Sbjct: 477 VGTLLAQSERPVHPSDT 493 >gi|270158102|ref|ZP_06186759.1| NADH-quinone oxidoreductase M subunit [Legionella longbeachae D-4968] gi|289163633|ref|YP_003453771.1| NADH-quinone oxidoreductase chain M [Legionella longbeachae NSW150] gi|269990127|gb|EEZ96381.1| NADH-quinone oxidoreductase M subunit [Legionella longbeachae D-4968] gi|288856806|emb|CBJ10617.1| NADH-quinone oxidoreductase chain M [Legionella longbeachae NSW150] Length = 501 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 218/484 (45%), Positives = 315/484 (65%), Gaps = 20/484 (4%) Query: 6 LSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV--FDKGRSSF 62 L+++ +LP +G VFV+L +G R L + T+ L + V FD Sbjct: 5 LNLLIWLPIIGGVFVLL----VGDDRNPNISRYLALFTVILCLLLCIPLVAGFDTKILGM 60 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E + W+ SY LG+DG+S+LL+VL+ F +L++W+SI +Y+ AFL++ Sbjct: 61 QYLEEFRWMPALGISYSLGIDGLSLLLIVLSVFTNLIVLLATWESITSRVSQYLAAFLIM 120 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 + +++G F +LD +LFY+F+EA+LIPM++IIG+WG R+YAA KFFLYTF GS+ ML + Sbjct: 121 QGLLVGVFSALDAILFYVFWEATLIPMYLIIGIWGSDNRVYAAIKFFLYTFLGSVLMLAS 180 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + M + T +I YA+ K + Q ++IAFF FAIKIPMFP HTWLP+AH +AP Sbjct: 181 FLYMGYIAGTFNIEAFYAI-KLGMTAQTLIFIAFFLGFAIKIPMFPVHTWLPDAHTEAPA 239 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GSV LA I+LK+G YG IRF LP+ P A +A V+ LSLIAI+Y +LV+++Q D+K+ Sbjct: 240 GGSVVLAAILLKLGAYGFIRFSLPIVPDACNRYAGVMIALSLIAIVYIALVAIIQKDMKR 299 Query: 302 LIAYSSIAHMGYVTIGIFS----GMKSG-------VEGAMFQMLSHGLVSSALFFCVGVI 350 LIAYSSI+HMG+VT+G F+ +SG +EGA+ M+SH VSS LF VG I Sbjct: 300 LIAYSSISHMGFVTLGSFAIFAIAKQSGLSGAGLILEGAIVVMISHAFVSSGLFAGVGYI 359 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 YDR+HTR + +GG+V+ MP +A M+F MAN G+PGTSGF+GEF+VI+ + VA Sbjct: 360 YDRMHTRKLADFGGIVNTMPMFASFFMLFCMANAGMPGTSGFVGEFMVIVGSLKAGFWVA 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 A+ ++ SA Y+LW+Y++V+FG EKV LKDL+ E +A+ + G+YP Sbjct: 420 FWAATTLITSAGYNLWMYKRVIFGPIANEKVAALKDLTGFELSAYILLALAVIVMGVYPK 479 Query: 471 PIRD 474 P+ + Sbjct: 480 PLLE 483 >gi|86156842|ref|YP_463627.1| proton-translocating NADH-quinone oxidoreductase subunit M [Anaeromyxobacter dehalogenans 2CP-C] gi|85773353|gb|ABC80190.1| NADH dehydrogenase subunit M [Anaeromyxobacter dehalogenans 2CP-C] Length = 542 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 205/495 (41%), Positives = 316/495 (63%), Gaps = 12/495 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD--KG 58 MNL L++VTFLP LG ++ + +AL +S + F SL +W FD G Sbjct: 1 MNL--LTVVTFLPLLGALAMVLVPRDEPSQHR--ALALVVSLVTFALSLGLWFGFDASPG 56 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 FQ W+ +H+G+DG+++LL +LTT L P +LS+WK++ + +E+MIA Sbjct: 57 APEFQFELMIPWMPTIGIGFHVGLDGVALLLFMLTTVLMPVVVLSAWKAVGDRVKEFMIA 116 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 LVLES ++G F++LD++LFY+F+EA LIPM+++IG+WG R+YA KFF+YTF S+ Sbjct: 117 LLVLESAMLGTFIALDLVLFYVFWEAMLIPMYLLIGIWGSQNRLYATVKFFVYTFAASVL 176 Query: 178 MLFAIV-VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML AI+ V + T ++ W+++AF +FA+K+PMFP HTWLP+AH Sbjct: 177 MLLAILYVYFHDGGTFDYVEARRALAVTPGAASWLFLAFALAFAVKVPMFPLHTWLPDAH 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +APTAGSV LAG++LKMG +G R+ LPLFP A+ ++ L++I IIY +L+S+VQ Sbjct: 237 TEAPTAGSVILAGVLLKMGTFGFFRYALPLFPEAALQHRNLVAVLAVIGIIYGALMSLVQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K+L+AYSS++H+G+V +G+ + G+ G+++QML+HG+ + ALF VG++Y+R HT Sbjct: 297 TDMKRLVAYSSVSHLGFVMLGLMALSAEGMTGSVYQMLNHGVSTGALFLLVGMLYERRHT 356 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI----MSVFQNSNTVAVL 412 R I YGG+ +P A ++ T++++GLPGT+GF+GEFL++ +S S A + Sbjct: 357 RLISEYGGIAKRVPVIAAAFVIVTLSSIGLPGTNGFVGEFLILSGTWLSRLGGSAVFATV 416 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GV+L A+Y L L KV FG ++ L DLS+RE ++ P+ L V G+ P P Sbjct: 417 AALGVILGAVYMLLLVEKVFFGPNQNAANHHLPDLSVREGFVLAPMIALIVVMGLLPGPF 476 Query: 473 RDTFSVPLSSIIENY 487 + +I+ + Sbjct: 477 LAPAKPAVDRLIQRF 491 >gi|258541837|ref|YP_003187270.1| NADH-quinone oxidoreductase chain M [Acetobacter pasteurianus IFO 3283-01] gi|256632915|dbj|BAH98890.1| NADH-quinone oxidoreductase chain M [Acetobacter pasteurianus IFO 3283-01] gi|256635972|dbj|BAI01941.1| NADH-quinone oxidoreductase chain M [Acetobacter pasteurianus IFO 3283-03] gi|256639027|dbj|BAI04989.1| NADH-quinone oxidoreductase chain M [Acetobacter pasteurianus IFO 3283-07] gi|256642081|dbj|BAI08036.1| NADH-quinone oxidoreductase chain M [Acetobacter pasteurianus IFO 3283-22] gi|256645136|dbj|BAI11084.1| NADH-quinone oxidoreductase chain M [Acetobacter pasteurianus IFO 3283-26] gi|256648191|dbj|BAI14132.1| NADH-quinone oxidoreductase chain M [Acetobacter pasteurianus IFO 3283-32] gi|256651244|dbj|BAI17178.1| NADH-quinone oxidoreductase chain M [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654235|dbj|BAI20162.1| NADH-quinone oxidoreductase chain M [Acetobacter pasteurianus IFO 3283-12] Length = 505 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/467 (42%), Positives = 303/467 (64%), Gaps = 4/467 (0%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS++T+LP + V F+ + S V L S I S+ +W FD + Q Sbjct: 5 LLSLITYLPLVAALVAFFAPGRPEQQDSTARWVGLWSSLITLGLSVLMWLEFDPAQPGLQ 64 Query: 64 MIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 W+ DY SYH GVDGIS++ ++LT FLTP + + W+S+ R+++ A L LE Sbjct: 65 FETRLRWMGDYGISYHTGVDGISLVFILLTAFLTPLALGAGWRSVHTQGRQFVAAMLALE 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + + G F + DMLLFY+F+EA+LIP ++IGVWGG +R++A+ +FFL+TF GS+FML + Sbjct: 125 TALFGLFSAQDMLLFYVFYEATLIPGSLMIGVWGGPKRVWASLQFFLFTFGGSLFMLVGL 184 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + M + T+ I L + F +Q W+ +AF +F +K+P+FP H WLP+A+ +APT Sbjct: 185 ITMWLQTGTTDIPALM-HAGFSQPLQGWLLLAFLLAFGVKLPLFPLHAWLPDAYSEAPTP 243 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 S L+G++ K G YG +RF + +FP A + FAP + L ++AIIYA+ V+ QTD+K++ Sbjct: 244 ASAMLSGVLSKTGAYGLLRFGVLMFPDAVRLFAPYVLALGVVAIIYAAFVAFAQTDMKRV 303 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS +HMG + +G+F+ G++GA+FQMLSHG+V +ALFFCV + R T+ I A Sbjct: 304 IAYSSFSHMGMIAVGLFTLTAEGIDGAIFQMLSHGVVIAALFFCVAAVAWRSETQQIDAL 363 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GG+ MP A++ M+FTMAN+GLPGT F+GE LV+M S VA+LA +++ A+ Sbjct: 364 GGVARQMPVLALLAMLFTMANVGLPGTGSFVGELLVLMGAVHVSFWVALLAGSTMIMGAV 423 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Y L LYR+V+FG K V L+DL+ E ++ P+A++T++ G++P Sbjct: 424 YMLSLYRRVLFGGVKG-TVSLLRDLTAAEIAVLAPLAIVTLWMGVHP 469 >gi|170676854|ref|YP_001742097.1| NADH dehydrogenase subunit 4 [Suberites domuncula] gi|170649720|emb|CAM84212.1| NADH dehydrogenase subunit 4 [Suberites domuncula] Length = 484 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 215/474 (45%), Positives = 303/474 (63%), Gaps = 10/474 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L +V P +G+FVIL + R + AL S + ++ +W+ FD G Q + Sbjct: 2 LELVFITPLIGIFVILTTPRDNIAR--LWKRALEWSLLTLTMTILLWASFD-GEGQLQGM 58 Query: 66 EYYHWID----YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 + WI F + L +DGIS+ ++LT LTP CIL SW SI+ +E+++ L + Sbjct: 59 MKFRWISSIEPIFGAALLAIDGISLFFIILTALLTPICILISWNSIRFLIKEFLLRLLSM 118 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLF 180 E ++IG F D++ FYI FE LIPMF+IIG+WG E+I A+Y FF YTF GS+FML Sbjct: 119 EILLIGVFSIFDIVGFYILFEGVLIPMFLIIGIWGSREEKIQASYYFFFYTFIGSVFMLL 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI + ++ L ++ K +QY++ + FF S AIKIP PFH WLP AHV+AP Sbjct: 179 AIFTLYSHAGSTDYQALCSL-KLERELQYFIILGFFLSLAIKIPKMPFHIWLPQAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGSV LAG++LK+GGYG IRF PL P AS+YFAP+I LSL A+IY SL + Q D+K Sbjct: 238 VAGSVILAGVLLKLGGYGFIRFSWPLLPDASEYFAPLIQTLSLFAVIYGSLTTCRQVDLK 297 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 ++IAYSS+AHMG VT+G+FS G+ GA+F ML HGLVSSALF V ++Y+R HTR + Sbjct: 298 RIIAYSSVAHMGLVTLGLFSHTVQGLVGAVFLMLGHGLVSSALFIGVTLLYERFHTRLVK 357 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 Y G+ MP +A+++++ +AN +P +S FIGEFL +++ F+ S VLASFGVVLS Sbjct: 358 YYRGVAVTMPLFAMLLLILVLANASIPLSSNFIGEFLSLLAAFEYSIIEGVLASFGVVLS 417 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 A YS++LY +V FG + + + +DL+ RE + P+ +L GI+P + D Sbjct: 418 AGYSIYLYNRVCFG-APSKFIYFFRDLNRREFYTLVPLILLIFLMGIFPFSVVD 470 >gi|330821329|ref|YP_004350191.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia gladioli BSR3] gi|327373324|gb|AEA64679.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia gladioli BSR3] Length = 517 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 204/500 (40%), Positives = 319/500 (63%), Gaps = 7/500 (1%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 ++PFLS+ + P + GV ++ S R + +AL + + + ++ + + FD + Sbjct: 3 SVPFLSLAIWTPIVFGVAILRIGSDRYPHRARW--LALVGAIVGLLVTVPLVAGFDAHNT 60 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q EY W+ F S + +GVDG+S+ LVVL+ F T +++SW+S+ +Y +FL Sbjct: 61 AAQFTEYKPWLSAFGSAWRMGVDGLSLWLVVLSAFTTLVIVIASWESVTTRVAQYHGSFL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L ++IG F SLD +LF+IFFEA+LIP+FV+IG WG + R YAA KFF +F GS+ ML Sbjct: 121 ILSGLMIGVFTSLDGMLFFIFFEATLIPLFVLIGTWGHANRAYAAIKFFFISFAGSLLML 180 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ + T + ++ + F+ Q +++ FF +FA+K+PM+P HTWL + + Sbjct: 181 AAMLYLFGVTHTFDM-AVWQKAHLGFTPQLLVFLGFFAAFAVKVPMWPVHTWLQDVYTDG 239 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT +V L M+K+GGYG +RF LP+ P A+ Y APV+ LSLIA++YASL+++ Q D+ Sbjct: 240 PTGAAVSLG--MIKIGGYGFLRFALPITPDAAHYLAPVMIGLSLIAVVYASLLALAQKDM 297 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K++AYS++AHMG VT+G+F + + GA+ QM+S+G V+ A+F CVG +YDR TR I Sbjct: 298 AKMLAYSAVAHMGLVTLGVFLFDQMSITGAIVQMISYGFVAGAMFLCVGALYDRTKTRAI 357 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 Y G+V+ MPR A+ ++F MAN+GLPGTSGF+GEFLVIM + + + +A+ ++L Sbjct: 358 AEYSGVVNTMPRLALFAVLFAMANVGLPGTSGFVGEFLVIMGAVRVNFWIGAIAALTLIL 417 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+ ++V+FG K E+V +L DLS RE + +AV+ + GIYP P D Sbjct: 418 SAAYTLWMLKRVIFGAIKHERVGKLIDLSRRESVVFAALAVIVLAIGIYPKPFTDVIDPA 477 Query: 480 LSSIIENYTLKTGYSDSVKG 499 +SI+ + + G Sbjct: 478 AASIVAQLEQRANAAQDGSG 497 >gi|229328265|ref|YP_002860278.1| NADH dehydrogenase subunit 4 [Megaceros aenigmaticus] gi|186695234|gb|ACC86801.1| NADH dehydrogenase subunit 4 [Nothoceros aenigmaticus] Length = 496 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 207/438 (47%), Positives = 288/438 (65%), Gaps = 6/438 (1%) Query: 37 ALGIST--INFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTT 93 ++G+ T I F++S F+W FD + FQ +E W+ Y ++++G+DGIS+ VVLTT Sbjct: 39 SIGLRTFLITFLYSPFLWIEFDNSTAKFQFVESIRWLPYSNINFYIGIDGISLSFVVLTT 98 Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF-VII 152 FL P IL W S + +EYMIAFL+ ES++I D LL ++F E+ I MF +II Sbjct: 99 FLIPIRILVGWSSTKSYKKEYMIAFLICESLMIAVSRMPDPLLSHVFLESVSILMFLIII 158 Query: 153 GVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM 211 G+WG +R I AAY+FFLYT GS+FML AI + ++ T+ + + ++F Q + Sbjct: 159 GIWGSRQRKIQAAYQFFLYTLLGSVFMLLAISSISFQTGTTD-LRILLTTEFSERRQVLL 217 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 IAFF SFA+K+PM P H WLP AHV+APTAGSV LAGI+ K+G YG +RF +P+FP A+ Sbjct: 218 RIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILSKLGTYGFLRFSIPMFPEAT 277 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 +F P I LS+IAIIY L ++ Q D+KK+IAYSS+AHM +VTIG+FS G+EG++ Sbjct: 278 FFFIPFICTLSVIAIIYTPLTTVRQIDLKKMIAYSSVAHMNFVTIGMFSLNIQGIEGSIS 337 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 MLSHGLVS A CVG +YDR TR + YGGLV MP + + + FT+ANM LPG+S Sbjct: 338 LMLSHGLVSLAPPPCVGALYDRHKTRLVKYYGGLVSTMPIFCTISLFFTLANMSLPGSSS 397 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 FIGEF + F+ ++ VA LA+ G++L A YS L+ +VVFG K +++ D + RE Sbjct: 398 FIGEFPIPTGAFERNSLVATLAALGMILGAAYSPRLHNRVVFGNFKPNFLKKFSDSNRRE 457 Query: 452 RCMVYPIAVLTVFFGIYP 469 + P V + G+YP Sbjct: 458 VFIFLPFIVGVIRMGVYP 475 >gi|164420947|ref|YP_001648460.1| NADH dehydrogenase subunit 4 [Amphimedon compressa] gi|158668071|gb|ABW76535.1| NADH dehydrogenase subunit 4 [Amphimedon compressa] Length = 484 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 210/443 (47%), Positives = 289/443 (65%), Gaps = 8/443 (1%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI----DYFCSYHLGVDGISILLVVLT 92 AL S + +L VW FD G FQ + + WI F S GVDG+S+ +VLT Sbjct: 31 ALDWSLLTLTGTLVVWGSFD-GEGQFQAVLNFGWILGVEPAFGSVFFGVDGVSLFFLVLT 89 Query: 93 TFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 LTP CIL SW SI +E+++ L +E +++G F +LD++LFYI FE LIPMF+II Sbjct: 90 ALLTPICILISWNSINFLIKEFLLCLLFIEILLMGVFTTLDLVLFYILFEGILIPMFLII 149 Query: 153 GVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM 211 G+WG E+I A+Y FF YTF GS+FML AI + T+ L + +F +QY + Sbjct: 150 GIWGSREEKIQASYYFFFYTFLGSVFMLLAIFTVYRYAGTTDYQALCCL-QFGKELQYLI 208 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 + FF S AIKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PL P AS Sbjct: 209 FGGFFLSLAIKIPKIPFHIWLPLAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPDAS 268 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 +YF+P+I LSL+AIIY SL + Q D+K++IAYSS+AHMG VT+GIFS G+ A+F Sbjct: 269 EYFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTMQGLVAAIF 328 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 ML+HGLVSSALF V ++Y+R TR + Y G+V M + +M+ T+AN +P + Sbjct: 329 LMLAHGLVSSALFIAVTLLYERHQTRLVKYYRGIVITMXLFGTLMLALTLANASIPLSCN 388 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 F+GEF+ +++ F+ S V VLAS G VLSA YS++LY +V FG + + +Q +DL+ RE Sbjct: 389 FVGEFISLLAAFEYSYIVGVLASLGTVLSASYSIYLYNRVCFG-TPSKYLQFSRDLNRRE 447 Query: 452 RCMVYPIAVLTVFFGIYPVPIRD 474 +++P+ +L G++P I D Sbjct: 448 FYVLFPLVILIFLIGVFPFIIID 470 >gi|296274491|ref|YP_003657122.1| proton-translocating NADH-quinone oxidoreductase subunit M [Arcobacter nitrofigilis DSM 7299] gi|296098665|gb|ADG94615.1| proton-translocating NADH-quinone oxidoreductase, chain M [Arcobacter nitrofigilis DSM 7299] Length = 508 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 208/500 (41%), Positives = 309/500 (61%), Gaps = 19/500 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLG--CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSI+ F P F++++G S A+ ++ + F+ SL VW FD Q Sbjct: 5 LSILIFFP-------AFAAFIGFLVKSDSIRTYAIIVTAVEFLISLLVWYGFDSSMPDMQ 57 Query: 64 MIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E ID Y +Y +G+DGIS+ LV++TTF+T I+ + + + +I L LE Sbjct: 58 FLETMPLIDAYGINYVVGIDGISLFLVLMTTFMTFISIIGLTE--KRALKNMVITVLFLE 115 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++G FL+LD ++FY+F+E SLIPM IIG WGG+ RIYA+ KFF+YTF GS+ ML + Sbjct: 116 MTMVGVFLALDAIVFYLFWELSLIPMLYIIGAWGGNLRIYASIKFFIYTFTGSLVMLLGM 175 Query: 183 VVMCWEKKTSS------IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + + + ++ ++D + M PF +Q W+++AFF FAIK+PM PFHTWLP AH Sbjct: 176 LYLGYVYYVTAGSWSFNLLD-WNMLILPFDMQLWLFVAFFLGFAIKVPMVPFHTWLPYAH 234 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 QAPT GSV LA ++LKMG YG IRF LPLFP A+ +F + L+LIAI+Y ++V+ Q Sbjct: 235 GQAPTIGSVILAAVLLKMGTYGFIRFSLPLFPDATVHFMIPMAILALIAIVYTAMVAYAQ 294 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 DIK+++AYSS++HMG + +G F+ G+ G++F M+SHG+VS ALF VGVIYDR HT Sbjct: 295 EDIKQVVAYSSVSHMGVIILGTFALNVEGIGGSIFLMISHGIVSGALFMLVGVIYDRRHT 354 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 + + +GGL MP+YA + + MA++GLP T GF+GEFL ++ F+ S ++A Sbjct: 355 KMMSEFGGLAKVMPKYATIFAIMLMASIGLPLTIGFVGEFLSLLGFFKVSPIFTIIAGLT 414 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++L A+Y L LY+K FG K + L+D RE + P+ L + GIYP PI + Sbjct: 415 IILGAVYMLVLYKKTFFGPITNPKNETLEDAKGRELVALIPLVALVIILGIYPKPILEPV 474 Query: 477 SVPLSSIIENYTLKTGYSDS 496 + + +++ +K S Sbjct: 475 NTSVKHLVQVMQIKAQQETS 494 >gi|225850953|ref|YP_002731187.1| NADH-quinone oxidoreductase subunit m (nadhdehydrogenase i subunit m) (ndh-1 subunit m) [Persephonella marina EX-H1] gi|225645780|gb|ACO03966.1| NADH-quinone oxidoreductase subunit m (nadhdehydrogenase i subunit m) (ndh-1 subunit m) [Persephonella marina EX-H1] Length = 502 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 214/468 (45%), Positives = 300/468 (64%), Gaps = 24/468 (5%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTT- 93 V++ S I F+ S F+ +D Q E Y WI SY +GVD +S+ +V LT Sbjct: 38 VSIITSAIVFLISTFMLFAYDYSSYKIQFYEKYTWIPQLGVSYEVGVDALSLTMVWLTAL 97 Query: 94 -FLTPFCILSSWKS-IQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 FL F W + IQ+ +EY I+FL+LE+ IG F+S D++ FYIF+EA LIPMF+I Sbjct: 98 AFLVSFI----WSTNIQKRIKEYFISFLILEAACIGVFVSWDLVWFYIFWEAMLIPMFLI 153 Query: 152 IGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM------CWEKKTSSIIDLYAMSKFPF 205 IG+WG +ERIYAA KFF+YTFFGS+F+L ++ M + ++S DL ++ PF Sbjct: 154 IGIWGYAERIYAATKFFIYTFFGSLFLLIGVIGMYIYQYFNKDVLSTSYFDLVNLN-LPF 212 Query: 206 SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 +++ ++ FAIK+PM+PFHTWLP AHVQAPTAGSV LA ++LKMG YG +RF LP Sbjct: 213 NLEIIFFLLLALGFAIKVPMWPFHTWLPAAHVQAPTAGSVILAAVLLKMGTYGFVRFSLP 272 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 FP AS+YF PV+F L +IAIIY +++++ QT IK++IAYSS++HMG+VTIG F+ G Sbjct: 273 WFPEASKYFVPVMFTLGVIAIIYTAMMALSQTHIKRIIAYSSVSHMGFVTIGTFALNMEG 332 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 + GA+ M+SHG S+ALF G IYDR+H+ ++ GGL MP +A + M+ MA+ G Sbjct: 333 MNGAIITMISHGFTSAALFLAAGYIYDRVHSYELKDLGGLAKFMPVFATLFMISAMASAG 392 Query: 386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS-----KCEK 440 LPG SGF+GEFL ++ F+ S AVLA +++ A Y+LWLY K +F S K + Sbjct: 393 LPGLSGFVGEFLSLVGTFKASVLTAVLAGLSLIVGAGYTLWLYHKSMFKESLLTPEKIHR 452 Query: 441 VQQLKDLSLRERCMVYPIAVLTVFFGIYPV----PIRDTFSVPLSSII 484 ++LKD++ E P+ ++ GIYP I T + LS II Sbjct: 453 WEKLKDMNSFELASFVPLVIMMFVLGIYPAWWIKLIETTSAAILSKII 500 >gi|160872076|ref|ZP_02062208.1| NADH-quinone oxidoreductase, m subunit [Rickettsiella grylli] gi|159120875|gb|EDP46213.1| NADH-quinone oxidoreductase, m subunit [Rickettsiella grylli] Length = 514 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 206/471 (43%), Positives = 300/471 (63%), Gaps = 17/471 (3%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID-YFCSYHLGVDGISILLVVLTTF 94 VAL S I +F + ++ F+ SS Q E WI Y Y LGVDGIS+ L++LT F Sbjct: 44 VALTTSLITLVFCIPLYLGFNPAVSSMQFQENIDWITVYHIHYALGVDGISLPLILLTVF 103 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 T IL++W SI+ +YM AFL+++ M++G F S D +LFY+F+EA LIPM++ IGV Sbjct: 104 TTLLVILAAWHSIKLRVAQYMAAFLLMQGMMVGTFASTDSILFYVFWEAILIPMYLSIGV 163 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--IIDLYAMSKFPFSIQYWMW 212 WG R YA+ KFFLYTFFGS ML A++ + I Y + S Q W++ Sbjct: 164 WGSDNRSYASIKFFLYTFFGSALMLIALLYLGVHNPEHDFLIAHFYPL-PLGLSAQIWIF 222 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 +AF +FA+KIPM+PFHTWLP+AH +AP GSV LA +MLK+GGYG +RF LP+ P AS+ Sbjct: 223 VAFLIAFAVKIPMWPFHTWLPDAHTEAPAGGSVVLAALMLKLGGYGFLRFTLPIVPDASR 282 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG---IFSGMKS----- 324 A ++ L+LIAI+Y V++ Q D+K+LIAYSSIAHMG+V +G +F+ MK Sbjct: 283 LLAGLMIVLALIAIVYIGFVALAQIDMKRLIAYSSIAHMGFVVLGCFMLFAIMKQSHNTL 342 Query: 325 ----GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFT 380 +EGAM QM+SH S A+F VG++ R +R I YGGL +MP A M+F+ Sbjct: 343 MAYMSLEGAMVQMISHAFSSGAMFLAVGMLAYRFRSRLIKDYGGLATSMPLLASFFMLFS 402 Query: 381 MANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK 440 M+N+GLPGTSGF+GEF++I+S Q S + +A+ ++LSA Y+L++Y+++ FG + Sbjct: 403 MSNLGLPGTSGFVGEFMIILSAMQASFWITAIAATTLILSATYTLYMYKRIFFGEITNPR 462 Query: 441 VQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKT 491 + + D+ E+ + ++ +F GIYP P+ + SI++ ++L+T Sbjct: 463 IAESGDIHGFEKLVFILLSFAILFIGIYPAPLLTIMHTSVDSILQ-WSLQT 512 >gi|238025057|ref|YP_002909289.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia glumae BGR1] gi|237879722|gb|ACR32054.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia glumae BGR1] Length = 517 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/496 (40%), Positives = 317/496 (63%), Gaps = 7/496 (1%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 ++PFLS+ + P + GV V+ S R + +AL + + + ++ + + FD + Sbjct: 3 SVPFLSLAIWTPIVFGVAVLRIGSDRYPHRARW--LALVGAIVGLLLTVPLVAGFDAHNT 60 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q EY W+ F S + +GVDG+S+ LVVL+ F T +++SW+S+ +Y +FL Sbjct: 61 AVQFTEYKPWLSAFGSAWRMGVDGLSLWLVVLSAFTTLVIVIASWESVTTRVAQYHGSFL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L ++IG F SLD +LF+IFFEA+LIP+FV+IG WG + R YAA KFF +F GS+ ML Sbjct: 121 ILSGLMIGVFTSLDGMLFFIFFEATLIPLFVLIGTWGHANRSYAAIKFFFISFAGSLLML 180 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ + T + ++ ++ F+ Q +++ FF +FA+K+PM+P HTWL + + Sbjct: 181 AAMLYLFGLTHTFDMA-VWQQARLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLQDVYTDG 239 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT +V L M+K+GGYG +RF LP+ P A+ Y APV LSL+A++YASL+++ Q D+ Sbjct: 240 PTGAAVSLG--MIKIGGYGFLRFALPIAPDAAHYLAPVRIGLSLVAVVYASLLALAQKDM 297 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K++AYSS+AHMG VT+G+F + + GA+ QM+S+G V+ A+F CVG +YDR TR I Sbjct: 298 AKMLAYSSVAHMGLVTLGVFLFDQMSITGAIVQMISYGFVAGAMFLCVGALYDRTRTRAI 357 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 Y G+ + MPR A+ ++F+MAN+GLPGTSGF+GEFLVIM + + + +A+ ++L Sbjct: 358 AEYSGVANTMPRLALFAVLFSMANVGLPGTSGFVGEFLVIMGAVRVNFWIGAIAALTLIL 417 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+ ++V+FG K ++V +L DLS RE + +AV+ + GIYP P D Sbjct: 418 SAAYTLWMLKRVIFGAIKHDRVGKLIDLSRRESVVFAALAVIVLAIGIYPKPFTDVIDPA 477 Query: 480 LSSIIENYTLKTGYSD 495 +SI+ D Sbjct: 478 AASIVAQLERAKPAED 493 >gi|317134140|ref|YP_004123303.1| NADH dehydrogenase subunit 4 [Oscarella lobularis] gi|308912747|gb|ADO51504.1| NADH dehydrogenase subunit 4 [Oscarella lobularis] Length = 491 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 205/435 (47%), Positives = 282/435 (64%), Gaps = 10/435 (2%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWI----DYFCSYHL--GVDGISILLVVLTTFLTPFCIL 101 ++ +W FD G FQ + WI D + S + VDGISI ++LT L P CIL Sbjct: 47 TIILWISFD-GEGQFQATQIIEWISSTTDLWSSGMVVFAVDGISIFFIILTALLIPICIL 105 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SER 160 SW SI+ +E+++ + LE +++G +LD+LLFYI FE LI MF+IIG+WG E+ Sbjct: 106 ISWNSIKFLLKEFLLCLIFLEILLMGVXTALDLLLFYILFEGILIXMFLIIGIWGAREEK 165 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 + A+Y FF YT GS+FML I V+ T+ L + + Q W+++ FF S A Sbjct: 166 VLASYYFFFYTLIGSVFMLLGIFVLYSNTGTTDYQTLCGL-RLNGETQKWVFMGFFVSLA 224 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 IKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF P+ P AS+YFAP+I Sbjct: 225 IKIPKIPFHIWLPQAHVEAPCAGSVMLAGVLLKIGGYGFIRFSWPILPEASEYFAPLILT 284 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL+A+IY SL + Q D K+LIAYSS+AHMG VT+GIF+ G+ A+F ML+HGLVS Sbjct: 285 LSLLAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVTLGIFTHTIQGLVAAIFLMLAHGLVS 344 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S+LF V ++Y+R HTR I Y G+ MP +A +M++ T+AN+ +P + F+GEFL ++ Sbjct: 345 SSLFIIVTLLYERHHTRLIKYYRGMTITMPIFATIMLLMTLANIAVPLSCNFVGEFLSLL 404 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 + F+ S V VLAS G+VL A YSL+LY +V FG S + +D++ RE + P+ Sbjct: 405 AAFEYSIIVGVLASLGMVLGAAYSLYLYNRVCFGNSSNYIIFS-RDVNRREFYTLLPLVA 463 Query: 461 LTVFFGIYPVPIRDT 475 LT+ GIYP I DT Sbjct: 464 LTILMGIYPSAIIDT 478 >gi|262195160|ref|YP_003266369.1| proton-translocating NADH-quinone oxidoreductase, chain M [Haliangium ochraceum DSM 14365] gi|262078507|gb|ACY14476.1| proton-translocating NADH-quinone oxidoreductase, chain M [Haliangium ochraceum DSM 14365] Length = 585 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 210/476 (44%), Positives = 300/476 (63%), Gaps = 15/476 (3%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTF 94 V LG S + F SL ++ F+ + FQ++ WID ++ LG+DGIS+ LVVLTTF Sbjct: 35 VGLGFSLLTFGLSLGIFGYFESANAQFQLVIDLPWIDGLGAHFKLGIDGISLWLVVLTTF 94 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 P +LSS+ SI + RE++ LVLE ++GAF+SLD+ LFYIF+E LIPM+++IG+ Sbjct: 95 TMPIVLLSSYSSIHKREREFVALMLVLELGMLGAFVSLDLFLFYIFWELMLIPMYLLIGI 154 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAI---VVMCWEKKTSSIIDLYAMSKFPFS--IQY 209 WGG+ RIYA+ KF +YT GS+ ML AI V+ E DL A+ + S Q Sbjct: 155 WGGNRRIYASIKFVIYTMVGSLLMLAAIFYVYVVHAEVAGFYTTDLEAVQRVLLSRDAQV 214 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 W + AF +FAIK+P+FP HTWLP+AHVQAPT GSV LAG++LK G YG +RF +P+FP Sbjct: 215 WCFAAFALAFAIKVPLFPLHTWLPDAHVQAPTTGSVVLAGVLLKFGVYGFLRFAVPMFPY 274 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 + AP + L++ IIY +LV+ Q D+KKL+AYSS++H+G+ +G+FS G+EG+ Sbjct: 275 GTSVVAPYLAILAVAGIIYGALVAFAQDDVKKLVAYSSVSHLGFCILGLFSMTARGIEGS 334 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F MLSHGL + LF +GV+Y+R HTR + YGGL MP +A V ++ T+ + GLPG Sbjct: 335 IFAMLSHGLTTGGLFLAIGVLYERRHTRRMAEYGGLWAQMPVFAGVFLICTLGSAGLPGL 394 Query: 390 SGFIGEFLVIMSVFQNSNT-------VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ 442 SGFIGEFL I F S + LA+ GV+L A+Y L++++K++FG + + Sbjct: 395 SGFIGEFLTIFGTFTTSAAYLPAPRLLGALAATGVILGAVYLLFMFQKLMFGPITRDANR 454 Query: 443 QLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSVK 498 L+DLS RE + P+ V+ G+ P P T + I + G +S+K Sbjct: 455 GLRDLSGREMVVFAPLVVMIFVMGVAPQPFLKTMEPSVERFIRFHQF--GLDESLK 508 >gi|170695686|ref|ZP_02886829.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia graminis C4D1M] gi|170139485|gb|EDT07670.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia graminis C4D1M] Length = 517 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/492 (39%), Positives = 315/492 (64%), Gaps = 5/492 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M LP LS++ ++P + V+L + R+ + +G + F+ + + + F + Sbjct: 1 MPLPLLSLLIWIPIVAGLVLLRAGSDAARGRTRWLALIG-AVAGFVPVIPLVATFRNDVT 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q +E + W F ++H+GVDGIS+ LV LT T +++SW+SI E +Y AFL Sbjct: 60 SMQFVENFRWSPTFDIAWHVGVDGISLWLVALTALTTIIIVVASWESITERTAQYFGAFL 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L + G F SLD ++F++ FEA+LIP++++IG WG S R YAA KFF +F GS+ ML Sbjct: 120 MLSGFMQGVFTSLDGMMFFVSFEATLIPLYLLIGTWGHSNRSYAAVKFFFVSFLGSLMML 179 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + + + L+ ++ Q +++ F +F +K+PM+P HTWLP+ H+ Sbjct: 180 MSMLYLYSQTHSFDLA-LWRETRLGTMPQVLIFLGFLAAFGVKVPMWPLHTWLPDVHLDG 238 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT +V + MLK+GGYG +RF LP+ P AS +FAP++ LSL+A+IYASL+++VQTD+ Sbjct: 239 PTGAAVMIG--MLKLGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYASLLALVQTDM 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 ++L+AYS++AHMG VT+G+F + G GA+ QMLS+G+VS A+ C G++YDR T I Sbjct: 297 RRLLAYSTVAHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVSGAMLLCTGMLYDRTKTAAI 356 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGG+ + MPR+A +M+F+MAN+GLPGTSGF+GEF+V+M + + + +A+ +VL Sbjct: 357 DEYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGAIRFNFWIGAMAASTLVL 416 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+Y++V+FG +V LKDL RE ++ +A+L + G+ P P D Sbjct: 417 SAAYTLWMYKRVIFGAIANARVAGLKDLGKREFVLLGAMALLVLAIGLDPKPFTDAIDPS 476 Query: 480 LSSIIENYTLKT 491 + +++ T Sbjct: 477 VGTLLAQSERST 488 >gi|284794665|ref|YP_003412023.1| NADH dehydrogenase subunit 4 [Lubomirskia baicalensis] gi|284098134|gb|ADB78065.1| NADH dehydrogenase subunit 4 [Lubomirskia baicalensis] Length = 483 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 205/443 (46%), Positives = 286/443 (64%), Gaps = 8/443 (1%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID----YFCSYHLGVDGISILLVVLT 92 AL S ++ +W+ FD G FQ I+ + WI F VDGISI ++LT Sbjct: 31 ALEWSLFTLTATILLWASFDGG-GQFQAIKKFEWIPGLEPVFGPALFAVDGISIFFLILT 89 Query: 93 TFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 LTP CIL SW SI+ +E+++ L +E ++IG F LD++ FYI FE LIPMF+II Sbjct: 90 ALLTPICILISWNSIKFLIKEFLLCLLFMEFLLIGVFSVLDLVGFYILFEGILIPMFLII 149 Query: 153 GVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM 211 G+WG E++ A+Y FF YTF GS+FML AI + + T+ L SK +QYW+ Sbjct: 150 GIWGSREEKVQASYYFFFYTFIGSVFMLLAIFTLYGQTGTTDYQALCCASK-DAELQYWV 208 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 ++ FF S AIKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PL P AS Sbjct: 209 FLGFFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEAS 268 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 ++FAP+I LS++AIIY SL + Q D+K++IAYSS+AHMG VT+GIFS G+ A+F Sbjct: 269 EFFAPLIQTLSILAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIF 328 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 ML+HGLVSSALF V ++Y+R HTR + Y G+ MP Y ++M+ +AN +P + Sbjct: 329 LMLAHGLVSSALFIAVTLLYERHHTRLVKYYRGMAITMPLYGILMLTLVLANASIPLSCN 388 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 FIGEF+ +++ F+ S + +LAS G+VLSA YS++LY ++ FG + +D++ RE Sbjct: 389 FIGEFISLLAAFEYSFIIGLLASLGMVLSAGYSIYLYNRICFGFPS-RYLYFSRDINRRE 447 Query: 452 RCMVYPIAVLTVFFGIYPVPIRD 474 ++P+ L G++P I D Sbjct: 448 FYTLFPLVFLIFLLGVFPFIIID 470 >gi|254247832|ref|ZP_04941153.1| NADH dehydrogenase subunit 4 [Burkholderia cenocepacia PC184] gi|124872608|gb|EAY64324.1| NADH dehydrogenase subunit 4 [Burkholderia cenocepacia PC184] Length = 490 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 183/435 (42%), Positives = 289/435 (66%), Gaps = 4/435 (0%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD ++ Q +E W+ F + +G+DG S+ LVVLT F T +++SW+S+ + Sbjct: 36 FDAHSAAMQFVERRDWLAAFNAGWRVGIDGASLWLVVLTAFTTLVVVVASWESVTVRVAQ 95 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y +FL+L +++G F++ D LLF+IFFEA+LIP++++IG WG R+YAA KFF +F Sbjct: 96 YYASFLILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGRERRVYAAVKFFFISFA 155 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 GS+F+L A++ + + T + ++ + F+ Q +++ FF +FA+K+PM+P HTWL Sbjct: 156 GSLFLLMAMLYLYAQSHTFDMA-VWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLS 214 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 + + PT ++ LA MLK+GGYG +RF LP+ P AS +FAP + LSL AI+YASL++ Sbjct: 215 DVYTDGPTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIA 272 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTD+ KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ CV V+ DR Sbjct: 273 LAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVNVLVDR 332 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 R+I AYGG+ MPR+A ++F MAN+GLPGTSGF+GEF+VIM + + + +A Sbjct: 333 TRQREIAAYGGVAGVMPRFATFTLLFAMANVGLPGTSGFVGEFMVIMGAIRFNFWIGAIA 392 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 + ++LSA Y+LW+ ++VVFG +++ +L DL+ RE M +A++ + GI P P Sbjct: 393 ALTLILSASYTLWMLKRVVFGKVASQRIAKLADLNRREIVMFASLALIVLAVGIDPKPFT 452 Query: 474 DTFSVPLSSIIENYT 488 D + +I+ + Sbjct: 453 DAIDPTVGKLIQEAS 467 >gi|187919711|ref|YP_001888742.1| proton-translocating NADH-quinone oxidoreductase subunit M [Burkholderia phytofirmans PsJN] gi|187718149|gb|ACD19372.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia phytofirmans PsJN] Length = 518 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/487 (40%), Positives = 312/487 (64%), Gaps = 5/487 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M LP LS++ ++P + V+L + R+ + +G + F+ + + + F + Sbjct: 1 MPLPLLSLLIWIPIVAGVVVLRAGSDAARSRTRWLALIG-AIAGFLPVIPLVTNFRNDVT 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q +E W F ++H+GVDGIS+ LV LT T +++SW+SI E +Y AFL Sbjct: 60 SMQFVENARWSPSFDIAWHVGVDGISLWLVALTALTTIIIVVASWESITERTAQYFGAFL 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L + G F SLD +LF+I FEA+LIP++++IG WG S R YAA KFF +F GS+ ML Sbjct: 120 MLSGFMQGVFTSLDGMLFFISFEATLIPLYLLIGTWGQSNRSYAAVKFFFVSFLGSLLML 179 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + + + L+ + Q +++ F +F +K+PM+P HTWLP+ H+ Sbjct: 180 MSMLYLYSQTHSFDLA-LWRETHLGTWPQVLIFLGFLAAFGVKVPMWPLHTWLPDVHLDG 238 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT +V + MLK+GGYG +RF LP+ P AS +FAP++ LSL+A+IYASL+++VQTD+ Sbjct: 239 PTGAAVMIG--MLKLGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYASLLALVQTDM 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 ++L+AYS++AHMG VT+G+F + G GA+ QMLS+G+VS A+ C G++YDR T I Sbjct: 297 RRLLAYSTVAHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVSGAMLLCTGMLYDRTKTASI 356 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGG+ + MPR+A +M+F+MAN+GLPGTSGF+GEF+V+M + + + +A+ ++L Sbjct: 357 AEYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGAIRFNFWIGAMAATTLIL 416 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+Y++V+FG +V LKDL RE ++ +A+L + GI P P D Sbjct: 417 SAAYTLWMYKRVIFGAIANARVANLKDLGKREFVLLGAMALLVLAIGINPKPFTDAIDPS 476 Query: 480 LSSIIEN 486 + +++ Sbjct: 477 VGTLLAQ 483 >gi|91789104|ref|YP_550056.1| proton-translocating NADH-quinone oxidoreductase subunit M [Polaromonas sp. JS666] gi|91698329|gb|ABE45158.1| NADH dehydrogenase subunit M [Polaromonas sp. JS666] Length = 491 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 206/468 (44%), Positives = 320/468 (68%), Gaps = 9/468 (1%) Query: 26 LGCGR----RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLG 80 L GR RS +AL + ++F+ +L ++ F G S+ Q +E WI F SYH+G Sbjct: 19 LALGRDEQARSVRWIALIGAVVSFLVTLPLYDGFQLGTSAMQFVEKGSWIQRFNVSYHVG 78 Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIF 140 VDGIS+ V+LT F+ I++SW++I +YM AF++L ++IG F +LD +LFY+F Sbjct: 79 VDGISLWFVLLTAFINVVVIIASWEAITTRVSQYMAAFMMLSGLMIGVFSALDGILFYVF 138 Query: 141 FEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM 200 FEA+LIPM++IIG+WGG +IYAA+KFFLYT GS+ +L A++ + K+ D+ Sbjct: 139 FEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLLGSLLLLVALIYLY--NKSGGSFDILTW 196 Query: 201 SKFPF--SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 K P ++Q ++ AFF +FA+K+PM+P HTWLP+ HV+APT GS LA IMLK+G YG Sbjct: 197 HKLPLGSAVQTVLFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYG 256 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +RF +P+ P AS+ +A V+ LS+IA+IY LV++VQ D+KKL+AYSS+AHMG+VT+G Sbjct: 257 FLRFSMPIAPDASREWAWVMIALSVIAVIYVGLVALVQQDMKKLVAYSSVAHMGFVTLGF 316 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 F GV G + QM++HG VS A+F C+GV+YDR+H+R+I +YGG+V+ MP++A ++ Sbjct: 317 FIFNDIGVSGGIVQMIAHGFVSGAMFLCIGVLYDRVHSREIASYGGVVNTMPKFAAFALL 376 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 F MAN GLPGT+GF+GE++VI+ +++ + A+ ++ A Y+LW++++V G Sbjct: 377 FAMANCGLPGTAGFVGEWMVILGAVKSNFWLGAAAATALIFGAAYTLWMFKRVYLGPVAN 436 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + V+ L D++ RE M+ +A+ ++ GIYP P D + ++ ++++ Sbjct: 437 DDVKALTDINSREFLMLSMLAIAVLYMGIYPKPFTDVMNPSVADLLKH 484 >gi|270267573|ref|YP_003331258.1| NADH dehydrogenase subunit 4 [Dendronephthya gigantea] gi|209887411|gb|ACI95033.1| NADH dehydrogenase subunit 4 [Dendronephthya gigantea] Length = 482 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 204/450 (45%), Positives = 292/450 (64%), Gaps = 9/450 (2%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH-----LGVDGISILLVVL 91 AL S I F S+ + + + FQ I ++W+ + +DGISI +VL Sbjct: 32 ALEWSLITFALSILLLVNLHQ-EAQFQQIIEFNWVSTIGWFEGSPILFAIDGISIFFIVL 90 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 +T LTP CIL SW SI+ +E++I L +E ++IG F +LD+L+FY+ FE+ LIPMF+I Sbjct: 91 STLLTPICILVSWNSIKFLVKEFIICLLGMELLLIGVFSTLDLLIFYVLFESILIPMFLI 150 Query: 152 IGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW 210 IGVWG +E+I AAY FF YT GSI ML +I V+ T+ + L + + +IQ W Sbjct: 151 IGVWGARAEKIKAAYYFFFYTLVGSILMLLSIAVIYRITGTTDYLSLTNI-QIDNNIQIW 209 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +++ FF S A+KIPM PFH WLP AHV+AP AGSV LAGI+LK+GGYG IRF PLFP A Sbjct: 210 LFVGFFLSLAVKIPMIPFHIWLPLAHVEAPLAGSVILAGILLKLGGYGFIRFAWPLFPEA 269 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 ++Y AP+I LSLIA+IY SL + Q D K+LIAYSS+AHMG VTIG+F+ G+ ++ Sbjct: 270 TEYLAPIILTLSLIAVIYGSLTTCRQVDAKRLIAYSSVAHMGIVTIGLFTHTMEGLIASI 329 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 F M++HG+VS ALF V ++Y+R HTR I Y G+V MP ++++ MVFT+AN+ +P + Sbjct: 330 FLMIAHGVVSPALFIAVTLLYERHHTRLIRYYRGVVMTMPLFSIIFMVFTLANIAVPLSC 389 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 F+GEFL +++ F S ++ +L S +V++A YSL+LY ++ FG + +D++ R Sbjct: 390 NFVGEFLSLVAAFSTSTSLGILTSTSMVIAAAYSLYLYNRICFGQLSPYLIFS-RDINRR 448 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 E P+ V V G+ P P+ + V L Sbjct: 449 EFNGQLPLIVAIVLLGVVPYPLIELVRVCL 478 >gi|4091917|gb|AAC99651.1| NADH dehydrogenase subunit 4 [Sarcophyton glaucum] Length = 495 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/450 (44%), Positives = 294/450 (65%), Gaps = 9/450 (2%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH-----LGVDGISILLVVL 91 AL S + F S+ + + + + FQ I ++W++ + +DGISI V+L Sbjct: 45 ALEGSLVTFALSILLLANLHQ-EAQFQQIMEFNWVNTIGWFEGSPILFAIDGISIFFVIL 103 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 +T LTP CIL SW SI+ +++++ L +E ++IG F +LD+L+FY+ FE+ LIPMF+I Sbjct: 104 STLLTPICILVSWNSIRFLLKDFIMCLLGMELLLIGVFSTLDLLIFYVLFESILIPMFLI 163 Query: 152 IGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW 210 IGVWG +E+I AAY FF YT GS+ ML +I + T+ + L + + +IQ W Sbjct: 164 IGVWGARAEKIKAAYYFFFYTLVGSVLMLLSIAAIYRITGTTDYLSLTHI-QIDSNIQIW 222 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++I FF S A+KIPM PFH WLP AHV+AP AGSV LAGI+LK+GGYG IRF PLFP A Sbjct: 223 LFIGFFLSLAVKIPMVPFHIWLPLAHVEAPLAGSVILAGILLKLGGYGFIRFAWPLFPEA 282 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 + Y APVI LSLIA++Y SL + Q D K+LIAYSS+AHMG VTIG+F+ G+ ++ Sbjct: 283 THYLAPVILTLSLIAVLYGSLTTCRQVDAKRLIAYSSVAHMGIVTIGLFTHTMEGLIASI 342 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 F M++HG+VS ALF V ++Y+R HTR I Y G V +MP ++++ MVFT+AN+ +P + Sbjct: 343 FLMIAHGVVSPALFVAVNLLYERHHTRLIRYYKGAVVSMPLFSIIFMVFTLANIAVPLSC 402 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 F+GEFL +++ F S ++ +L S +V++A YSL+LY ++ FG + +D++ R Sbjct: 403 NFVGEFLSLVAAFSTSTSLGILTSTSMVIAAAYSLYLYNRICFGQLSPYLIFS-RDINRR 461 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 E P+ V VF GI+P P+ + V L Sbjct: 462 EFNGQLPLVVAIVFLGIFPYPLIELVRVCL 491 >gi|52842975|ref|YP_096774.1| NADH dehydrogenase I, M subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295606|ref|YP_128021.1| NADH-quinone oxidoreductase chain M [Legionella pneumophila str. Lens] gi|54298760|ref|YP_125129.1| NADH-quinone oxidoreductase chain M [Legionella pneumophila str. Paris] gi|296108420|ref|YP_003620121.1| NADH dehydrogenase I chain M [Legionella pneumophila 2300/99 Alcoy] gi|52630086|gb|AAU28827.1| NADH dehydrogenase I, M subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752545|emb|CAH13977.1| NADH-quinone oxidoreductase chain M [Legionella pneumophila str. Paris] gi|53755438|emb|CAH16934.1| NADH-quinone oxidoreductase chain M [Legionella pneumophila str. Lens] gi|295650322|gb|ADG26169.1| NADH dehydrogenase I chain M [Legionella pneumophila 2300/99 Alcoy] gi|307611648|emb|CBX01335.1| NADH-quinone oxidoreductase chain M [Legionella pneumophila 130b] Length = 501 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/432 (46%), Positives = 291/432 (67%), Gaps = 13/432 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD Q IE W+ +Y LG+DG+S+LL+VL+ F IL++W SI + + Sbjct: 53 FDLQSFGMQFIEEIPWMPALGINYTLGIDGLSLLLIVLSIFTNLIVILATWDSISKKVSQ 112 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y+ AFL+++ +++G F ++D ++FYIF+EA+LIPM++IIG+WG R+YAA KFFLYTF Sbjct: 113 YLSAFLIMQGLLVGIFSAMDAIVFYIFWEATLIPMYLIIGIWGSDNRVYAAIKFFLYTFL 172 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 GS+ ML + + M + + I YA+ K + Q ++IAFF FAIKIPMFP HTWLP Sbjct: 173 GSVLMLASFLYMGYIAGSFKIETFYAI-KLGMTAQTLIFIAFFLGFAIKIPMFPVHTWLP 231 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH +AP GSV LA I+LK+G YG IRF LP+ P A +AP++ LSLIA++Y L++ Sbjct: 232 DAHTEAPAGGSVVLAAILLKLGAYGFIRFSLPIVPDACSKYAPLMVALSLIAVVYIGLIA 291 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFS--------GMKSG---VEGAMFQMLSHGLVSSA 342 ++Q D+KKLIAYSSI+HMG+VT+G F+ G+ + +EGA+ M+SH VSSA Sbjct: 292 IIQKDMKKLIAYSSISHMGFVTLGCFAIFAIARHGGLSNAGLILEGAIVVMISHAFVSSA 351 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 +F VG IYDR+HTR + +GG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI+ Sbjct: 352 MFAGVGFIYDRMHTRQLADFGGIVNTMPIFASFFMLFAMANAGLPGTSGFVGEFMVILGS 411 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 + VA A+ +++ A Y+LW+Y++V+FG +KV LKD+S E +A++ Sbjct: 412 IKAGFWVAFWAATTLIIGAAYTLWMYKRVIFGPVANKKVAALKDISGFELSAYVLLAIMV 471 Query: 463 VFFGIYPVPIRD 474 + G+YP P+ + Sbjct: 472 IALGVYPKPMLE 483 >gi|192293785|ref|YP_001994424.1| NADH dehydrogenase subunit 4 [Acanella eburnea] gi|148964840|gb|ABR19862.1| NADH dehydrogenase subunit 4 [Acanella eburnea] Length = 482 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 207/450 (46%), Positives = 290/450 (64%), Gaps = 9/450 (2%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH-----LGVDGISILLVVL 91 AL S I F S+ + + + FQ I + W+ + VDGISI +VL Sbjct: 32 ALEWSLITFALSILLLVNLHQ-EAQFQQIIEFSWVSTIGWFEGSPILFAVDGISIFFIVL 90 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 +T LTP CIL SW SI+ +E++I L +E + IG F +LD+L+FY+ FE+ LIPMF+I Sbjct: 91 STLLTPICILVSWDSIKFLVKEFIICLLGIELLYIGVFSTLDLLIFYVLFESILIPMFLI 150 Query: 152 IGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW 210 IGVWG +E+I AAY FF YT GS+ ML +I V+ T+ + L + + SIQ W Sbjct: 151 IGVWGARAEKIKAAYYFFFYTLVGSVLMLLSIAVIYRITGTTDYLSLTNIHIYT-SIQIW 209 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++I FF S A+KIPM PFH WLP AHV+AP AGSV LAGI+LK+GGYG IRF P+FP A Sbjct: 210 LFIGFFLSLAVKIPMVPFHIWLPLAHVEAPVAGSVILAGILLKLGGYGFIRFAWPIFPEA 269 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 ++Y AP+I LSLIA+IY SL + Q D K+LIAYSS+AHMG VTIG+F+ G+ ++ Sbjct: 270 TEYLAPIILTLSLIAVIYGSLTTCRQDDAKRLIAYSSVAHMGIVTIGLFTHTMEGLIASI 329 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 F M++HG+VS ALF V ++Y+R HTR + Y G+V MP +++V MVFT+AN+ +P + Sbjct: 330 FLMIAHGVVSPALFIAVTLLYERHHTRLVRYYRGVVMTMPLFSIVFMVFTLANIAVPLSC 389 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 F+GEFL +++ F S ++ VL S +V++A YSL+LY ++ FG + +D++ R Sbjct: 390 NFVGEFLSLVAAFSTSTSLGVLTSTSMVIAAAYSLYLYNRICFGQLSPYLIFS-RDINRR 448 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 E P+ V V GI P P+ + V L Sbjct: 449 EFNGQLPLIVAIVLLGIVPYPLIELIRVCL 478 >gi|78066846|ref|YP_369615.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. 383] gi|77967591|gb|ABB08971.1| NADH dehydrogenase subunit M [Burkholderia sp. 383] Length = 509 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/495 (40%), Positives = 318/495 (64%), Gaps = 8/495 (1%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + PFLS+ + P L +L + RR+ +AL + + + + + FD ++ Sbjct: 3 DFPFLSLAIWAPILFGACLLRAGSDHHPRRTRL-IALIGALVGLAAVVPLVAGFDAHSAA 61 Query: 62 FQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E +W+ F S + +G+DG S+ LVVLT F T +++SW+S+ +Y +FL+ Sbjct: 62 MQFVESRNWLAAFNSGWRVGIDGASLWLVVLTAFTTLVVVVASWESVTVRVAQYYASFLI 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L +++G F++ D LLF+IFFEA+LIP++++IG WG R+YAA KFF +F GS+ +L Sbjct: 122 LSGLMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGRERRVYAAVKFFFISFAGSLMLLM 181 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A++ + + T + ++ + F+ Q +++ FF +FA+K+PM+P HTWL + + P Sbjct: 182 AMLYLYAQSHTFDMA-VWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLSDVYTDGP 240 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T ++ LA MLK+GGYG +RF LP+ P AS +FAP + LSL AI+YASL+++ QTD+ Sbjct: 241 TGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDLG 298 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ CV V+ DR R+I Sbjct: 299 KLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVNVLVDRTKQREIA 358 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AYGG+ MPR+A ++F MAN+GLPGTSGF+GEF+VIM + + + +A+ ++LS Sbjct: 359 AYGGVAGVMPRFATFTVLFAMANVGLPGTSGFVGEFMVIMGAIRFNFWIGAIAALTLILS 418 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A Y+LW+ ++VVFG +++ +L DL+ RE M +A++ V G+YP P D + Sbjct: 419 ASYTLWMLKRVVFGKVASQRIAKLADLNRREIVMFASLALVVVMVGVYPKPFTDAIDPTV 478 Query: 481 SSIIENYT---LKTG 492 +IE+ + L TG Sbjct: 479 GRLIEDASHSKLPTG 493 >gi|307727839|ref|YP_003911052.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. CCGE1003] gi|307588364|gb|ADN61761.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. CCGE1003] Length = 536 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/500 (39%), Positives = 318/500 (63%), Gaps = 5/500 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M LP LS++ ++P + V++ + R+ + +AL + F+ + + + F + Sbjct: 21 MPLPLLSLLIWIPIVAGLVVMRAGSDTTLARTRW-LALAGAVAGFVPVIPLVAGFRNDVT 79 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q +E W F ++H+GVDGIS+ LV LT T +++SW+SI +Y AFL Sbjct: 80 SMQFVENIRWSPTFDIAWHVGVDGISLWLVALTALTTIIIVIASWESITRRTAQYFGAFL 139 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L + G F SLD ++F++ FEA+LIP++++IG WG + R YAA KFF +F GS+ ML Sbjct: 140 MLSGFMQGVFTSLDGMMFFVAFEATLIPLYLLIGTWGHANRSYAAVKFFFVSFLGSLMML 199 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + + + L+ ++F Q +++ F +F +K+PM+P HTWLP+ H+ Sbjct: 200 MSMLYLYSQTHSFDLA-LWRETRFGTMPQVLIFLGFLAAFGVKVPMWPLHTWLPDVHLDG 258 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT +V + MLK+GGYG +RF LP+ P AS +FAP++ LSL+A+IYASL+++VQTD+ Sbjct: 259 PTGAAVMIG--MLKLGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYASLLALVQTDM 316 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 ++L+AYS++AHMG VT+G+F + G GA+ QMLS+G+VS A+ C G++YDR T I Sbjct: 317 RRLLAYSTVAHMGLVTLGLFVFNRIGQAGAIVQMLSYGVVSGAMLLCTGMLYDRTKTAAI 376 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGG+ + MPR+A +M+F+MAN+GLPGTSGF+GEF+V+M + + + +A+ +VL Sbjct: 377 DEYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGTIRFNFWIGAIAASTLVL 436 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+Y++V+FG +V LKDL RE ++ +A+L + G+ P P D Sbjct: 437 SAAYTLWMYKRVIFGAIANARVATLKDLGKREFVLLGAMALLVLAIGLDPKPFTDAIDPS 496 Query: 480 LSSIIENYTLKTGYSDSVKG 499 + +++ T ++ G Sbjct: 497 VGTLLAQSERSTRPAELAPG 516 >gi|109156452|ref|YP_654284.1| NADH dehydrogenase subunit 4 [Pseudopterogorgia bipinnata] gi|108513897|gb|ABF93180.1| NADH dehydrogenase subunit 4 [Pseudopterogorgia bipinnata] Length = 482 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 205/450 (45%), Positives = 291/450 (64%), Gaps = 9/450 (2%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH-----LGVDGISILLVVL 91 AL S I F S+ + + + FQ I ++W+ + +DGISI +VL Sbjct: 32 ALEWSLITFALSILLLVNLHQ-EAQFQQIIEFNWVSTIGWFEGSPILFAIDGISIFFIVL 90 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 +T LTP CIL SW SI+ +E++I L +E ++IG F +LD+L+FY+ FE+ LIPMF+I Sbjct: 91 STLLTPICILVSWNSIKFLVKEFIICLLGMELLLIGVFSTLDLLIFYVLFESILIPMFLI 150 Query: 152 IGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW 210 IGVWG +E+I AAY FF YT GSI ML +I V+ T+ + L + + + Q W Sbjct: 151 IGVWGARAEKIKAAYYFFFYTLVGSILMLLSIAVIYRITGTTDYLSLTNI-QIDSNTQIW 209 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++I FF S A+KIPM PFH WLP AHV+AP AGSV LAGI+LK+GGYG IRF PLFP A Sbjct: 210 LFIGFFLSLAVKIPMIPFHIWLPLAHVEAPLAGSVILAGILLKLGGYGFIRFAWPLFPEA 269 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 ++Y AP+I LSLIA+IY SL + Q D K+LIAYSS+AHMG VTIG+F+ G+ ++ Sbjct: 270 TEYLAPIILTLSLIAVIYGSLTTCRQVDAKRLIAYSSVAHMGIVTIGLFTHTMEGLIASI 329 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 F M++HG+VS ALF V ++Y+R HTR I Y G+V MP ++++ MVFT+AN+ +P + Sbjct: 330 FLMIAHGVVSPALFIAVTLLYERHHTRLIRYYRGIVMTMPLFSIIFMVFTLANIAVPLSC 389 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 F+GEFL +++ F S ++ +L S +V++A YSL+LY ++ FG + +D++ R Sbjct: 390 NFVGEFLSLVAAFSTSTSLGILTSTSMVIAAAYSLYLYNRICFGQLSPYLIFS-RDINRR 448 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 E P+ V V GI P P+ + V L Sbjct: 449 EFNGQLPLIVAIVLLGIVPYPLIELVRVCL 478 >gi|332528763|ref|ZP_08404740.1| proton-translocating NADH-quinone oxidoreductase subunit M [Hylemonella gracilis ATCC 19624] gi|332041829|gb|EGI78178.1| proton-translocating NADH-quinone oxidoreductase subunit M [Hylemonella gracilis ATCC 19624] Length = 499 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/483 (41%), Positives = 318/483 (65%), Gaps = 2/483 (0%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS+ +LP + V+L + R+ VAL + +F+ +L +W+ FD ++ Q Sbjct: 3 LLSLAIWLP-IAFGVLLLTLGRESQARAVRWVALIGALASFLVTLPLWAGFDNSTAAMQF 61 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 +E W+ F +Y +GVDGIS+ V+LT F+T +++ W+ I E +YM AFL+L Sbjct: 62 VEQTVWMARFNVNYQVGVDGISLWFVLLTAFMTVIVVIAGWEVITERVNQYMGAFLILSG 121 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++IG F +LD LLFY+FFEA+LIPM++IIG+WGG +IYAA+KFFLYT GS+ +L A++ Sbjct: 122 LMIGVFSALDGLLFYVFFEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLLGSLLLLIALI 181 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + S I + + Q ++ AFF +FA+K+PM+P HTWLP+ HV+APT G Sbjct: 182 YLYLASGGSFDIATWHQLPLTGTAQTLVFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGG 241 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S LA IMLK+G YG +RF LP+ P A+ ++ ++ LSL+A+IY LV++VQ D+KKL+ Sbjct: 242 SAVLAAIMLKLGAYGFLRFSLPIAPDAAHEWSWLMITLSLVAVIYVGLVALVQQDMKKLV 301 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+AHMG+VT+G F G+ G + QM++HG VS A+F C+GV+YDR+H+R I YG Sbjct: 302 AYSSVAHMGFVTLGFFLFNDLGISGGLVQMIAHGFVSGAMFLCIGVLYDRMHSRQIADYG 361 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+++ MPR+ ++F MAN GLP T+GF+GE++VI+ + + V +LA+ ++ A Y Sbjct: 362 GVINTMPRFTAFALLFAMANCGLPATAGFVGEWMVILGAVKANFWVGLLAATALIFGAAY 421 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 +LW++++V G + V++L D++ RE M+ +A+ ++ G+ P P D ++ + Sbjct: 422 TLWMFKRVYLGPVANDHVKELTDINGREFLMLTVLALAVLWMGVDPKPFTDVMDASVAEL 481 Query: 484 IEN 486 +++ Sbjct: 482 LKH 484 >gi|159899730|ref|YP_001545977.1| proton-translocating NADH-quinone oxidoreductase subunit M [Herpetosiphon aurantiacus ATCC 23779] gi|159892769|gb|ABX05849.1| proton-translocating NADH-quinone oxidoreductase, chain M [Herpetosiphon aurantiacus ATCC 23779] Length = 517 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 203/501 (40%), Positives = 319/501 (63%), Gaps = 32/501 (6%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V FLP +G ++ F R F ALG ST+ F SL + F + Q Sbjct: 12 LSLVVFLPAVGAIILAFMRGQRGAARIF---ALGWSTLVFAVSLPILFNFKHDAAGLQFY 68 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 EY++WI D+ Y LG+DGIS+ LV+LTTF+TP I S+W +++E +++ L+ E Sbjct: 69 EYFNWIPDWGVRYELGLDGISLWLVLLTTFVTPLAIWSAW-NVEEKTNNFLMLILLQEMG 127 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G FL+ D+ LFYIF+E +LIPM+ +IG+WGG RIYA KFFLYTF S+FML I+ Sbjct: 128 MLGVFLAQDLFLFYIFWEFTLIPMYFLIGMWGGKRRIYATVKFFLYTFAASVFMLIGIIA 187 Query: 185 M-----------------CWEKKT-SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMF 226 + ++ +T + I+ + +S + ++++FF +FA+K+P++ Sbjct: 188 LGLLNYKYLAQQGLPTDTAFQVQTLMANINQFGLSDTELKL---LFLSFFVAFAVKVPLW 244 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P HTWLP+AHV+APTAGSV LA ++LKMGGYG IRF + LFP +Q +A I L++I I Sbjct: 245 PVHTWLPDAHVEAPTAGSVILAAVLLKMGGYGMIRFCVQLFPQIAQEWARPIALLAVIGI 304 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 IY +++S Q+DIKKL+AYSS++HMG++ +GIF+ + G++GA+ QM++HGL + ALF Sbjct: 305 IYGAVLSYAQSDIKKLVAYSSVSHMGFIVLGIFALNEVGLQGAVLQMINHGLSTGALFLL 364 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN- 405 +G++Y+R HTR++ YGGL +P + ++ TMA++GLPG +GF+GEFL+++ F + Sbjct: 365 IGMVYERTHTRELADYGGLWKVVPVFVYFLLFATMASVGLPGLNGFVGEFLIMLGAFDSP 424 Query: 406 -SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 T A+ GV+L+A+Y L +++ + G + L DL+ RE ++ P+ +L + Sbjct: 425 IGWTFTAFAAVGVILAAVYLLKMFQGIASGPFSERRTPHLSDLTRREVAILLPLCILMLV 484 Query: 465 FGIYPVPIRDTFSVPLSSIIE 485 G+Y F+ P+ + I+ Sbjct: 485 IGLY----SSYFTRPMETTIK 501 >gi|319412296|gb|ADV41833.1| NADH dehydrogenase subunit 4 [Bigelowiella natans] Length = 476 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 203/478 (42%), Positives = 304/478 (63%), Gaps = 15/478 (3%) Query: 8 IVTFL---PFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 ++TFL PFLG VF ++ + RSF ++ +S+ F+ SL +W FD + +Q Sbjct: 1 MITFLVITPFLGSVFALIMNP---AQSRSF---SVALSSAIFVTSLSLWVFFDTLDTRYQ 54 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + + GVDG+S+ ++LTT +TP C+ S S Q + AFL +E Sbjct: 55 FTDALPGLGSLGVPLQFGVDGLSLFFILLTTLITPICLAMSPMSKQPPL--FYCAFLFME 112 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFA 181 +++IGAF +LD++ FY+FFE LIPMF++IGVWG S RI AAY F YT GSI ML Sbjct: 113 ALLIGAFSALDLVSFYVFFEGVLIPMFILIGVWGSRSRRIRAAYYLFYYTLVGSILMLLG 172 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 I+ M E +S+ L+A +F + Q +W F + A+K+P+ P H WLP AHV+APT Sbjct: 173 ILYMYSELGATSVHILHA-HEFTLTEQLILWPLLFVALAVKVPVVPAHVWLPEAHVEAPT 231 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LAGI+LK+GGYG +R+++P+ P A++Y+ P++ ++ +++IY+SL ++ Q D+KK Sbjct: 232 AGSVVLAGILLKLGGYGMLRYIIPVLPEATEYYTPLVLTIASVSVIYSSLTTLRQVDLKK 291 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 +IAYSS+AHM +G+FS GVEG++F M+ HG+VSS LF VGV+YDR TR + Sbjct: 292 IIAYSSVAHMNLGLLGLFSLNTQGVEGSLFLMIGHGVVSSTLFLLVGVLYDRHGTRLLRY 351 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YGGL MP ++ + + F++ANMGLPGTS F+GE LV + + S AV++++G+VL A Sbjct: 352 YGGLTQVMPAFSALFLFFSLANMGLPGTSNFVGEILVFLGLIARSPVSAVISAWGMVLGA 411 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 YSLWL+ ++ G K + + DL+ E ++ + VL++ G+YP P D P Sbjct: 412 GYSLWLFNRICLGTLKIKHLSSFADLTQFELYIITFMCVLSIILGVYPSPALDILHAP 469 >gi|193216185|ref|YP_001997384.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroherpeton thalassium ATCC 35110] gi|193089662|gb|ACF14937.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroherpeton thalassium ATCC 35110] Length = 513 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 215/488 (44%), Positives = 311/488 (63%), Gaps = 23/488 (4%) Query: 1 MNLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 M+ FLS+ FLP LG+ + LF S +S+ V +S + F+ S F++ FD + Sbjct: 1 MSGSFLSVAIFLPLILGLPLFLFPSKSETAIKSYTFV---VSLLTFLVSCFLFYQFDVNK 57 Query: 60 S-SFQMIEYYHWI--DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 FQ HW+ + SY + +DGISILL V T FL P I SSW + + REY Sbjct: 58 GLQFQHEALTHWLGANMDISYLVALDGISILLFVFTAFLFPIVIASSWNDVHKQTREYHF 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+LE+ ++G F S D+ LFYIF+EA LIPM+ IIG+WGG +IYAA KFF+YT GS+ Sbjct: 118 FMLMLETGILGVFASTDLFLFYIFWEAMLIPMYFIIGIWGGKNKIYAATKFFIYTMVGSL 177 Query: 177 FMLFAIVVMCWEKK-------TSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFP 227 ML I+ + + T++ L ++ S S+ +W+ F SF IK+P+FP Sbjct: 178 LMLVGIIYLGYLGAEVNGGIFTTNYEKLRSLHLSSSTESLLFWL---FGISFFIKVPLFP 234 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 HTWLP+AH +APTAGSV LAG++LKMG YG IRF L LFP AS FA +I L++I II Sbjct: 235 LHTWLPDAHTEAPTAGSVVLAGVLLKMGTYGLIRFNLSLFPHASYEFASLISILAVIGII 294 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 Y +LV+MVQ D+KKL+AYSS++H+G+V +GIF+ + ++GA+ QM++HGL + LF + Sbjct: 295 YGALVAMVQPDVKKLVAYSSVSHLGFVVLGIFACTEEALQGAIIQMINHGLSTGLLFMLI 354 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ--- 404 G+IY R HTR I +GG+ +MP +A ++ T+A++GLPG +GFIGEFL+++ F Sbjct: 355 GMIYSRRHTRQIADFGGIKKSMPTFAAFFLIATLASVGLPGLNGFIGEFLILIGSFNSAV 414 Query: 405 -NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 +S+ A+ A+ GV+LSA+Y L +++KV G E+ + L DLS RE + + + V Sbjct: 415 LSSSYFAIFAAVGVILSAVYMLPMFQKVFLGDITHEENRTLVDLSGREIAVSALMILFIV 474 Query: 464 FFGIYPVP 471 + G +P P Sbjct: 475 WIGFFPSP 482 >gi|164421154|ref|YP_001648556.1| NADH dehydrogenase subunit 4 [Chondrilla aff. nucula CHOND] gi|158668115|gb|ABW76576.1| NADH dehydrogenase subunit 4 [Chondrilla aff. nucula CHOND] Length = 485 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 207/445 (46%), Positives = 291/445 (65%), Gaps = 9/445 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL----GVDGISILLVVL 91 + L S + F ++ +W+ FD G SFQ I +WI + + VDG+SI +VL Sbjct: 34 IGLEWSLLTFTATILLWASFDGG--SFQTINIVNWIFNLMTSSVKVVFAVDGVSIFFLVL 91 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 T L P CIL SW SI+ +E+++ ++E +++G F LD++ FYI FE LIPMF+I Sbjct: 92 TGLLIPICILISWNSIKYLIKEFLLCLFLIEVLLMGVFTVLDLVGFYILFEGILIPMFLI 151 Query: 152 IGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW 210 IGVWG E++ AAY FF YTF GS+FML I V+ + S+ +F S+QY+ Sbjct: 152 IGVWGSREEKVQAAYYFFFYTFIGSVFMLLGIFVL-YSLSGSTDYQTLCCLQFESSVQYF 210 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ FF S A+KIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PL P A Sbjct: 211 VFGGFFFSLAVKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPDA 270 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 S++F+P++ LS++A+IY SL + Q D+K++IAYSSIAHMG VT+GIFS SG+ A+ Sbjct: 271 SEFFSPLVQTLSILAVIYGSLTTCRQVDLKRIIAYSSIAHMGLVTLGIFSHTISGLMAAI 330 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 + ML+HGLVSSALF V +Y+R TR I Y G+ MP ++ +M++F +AN+G+P + Sbjct: 331 YLMLAHGLVSSALFIIVTFLYERHFTRLIKYYRGMTITMPIFSALMLLFILANIGIPLSC 390 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 F+GEFL + S F+ S V VLAS G+VLS YS++LY +V FGV + + +DL+ R Sbjct: 391 NFVGEFLSLFSAFEYSFVVGVLASLGMVLSGGYSMYLYNRVCFGVPS-KYLSFSRDLTRR 449 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDT 475 E + P+ LT G++P I DT Sbjct: 450 EVFSLLPLVFLTYLLGVFPSIITDT 474 >gi|317134341|ref|YP_004123127.1| NADH dehydrogenase subunit 4 [Oscarella microlobata] gi|308912656|gb|ADO51419.1| NADH dehydrogenase subunit 4 [Oscarella microlobata] Length = 486 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 206/435 (47%), Positives = 283/435 (65%), Gaps = 10/435 (2%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH------LGVDGISILLVVLTTFLTPFCIL 101 ++ +W FD G FQ + WI VDGISI ++LT L P CIL Sbjct: 42 TIVLWVSFD-GEGQFQATQIIEWISSTTGLWSSGVVVFAVDGISIFFIILTALLIPICIL 100 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SER 160 SW SI+ +E+++ + LE +++G F +LD+LLFYI FE LIPMF+IIG+WG E+ Sbjct: 101 ISWNSIRFLLKEFLLCLIFLEILLMGVFTALDLLLFYILFEGILIPMFLIIGIWGAREEK 160 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 + A+Y FF YT GS+FML I V+ T+ L + + IQ W+++ FF S A Sbjct: 161 VLASYYFFFYTLIGSVFMLLGIFVLYSNTGTTDYQTLCGL-RLDGEIQKWVFMGFFVSLA 219 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 IKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF P+ P AS+YFAP+I Sbjct: 220 IKIPKIPFHIWLPQAHVEAPCAGSVMLAGVLLKIGGYGFIRFSWPILPEASEYFAPLILT 279 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL+A+IY SL + Q D K+LIAYSS+AHMG VT+GIF+ G+ A+F ML+HGLVS Sbjct: 280 LSLLAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVTLGIFTHTIQGLVAAIFLMLAHGLVS 339 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S+LF V ++Y+R HTR I Y G+ MP +A +M++ T+AN+ +P + F+GEFL ++ Sbjct: 340 SSLFIIVTLLYERHHTRLIKYYRGMTITMPIFATIMLLMTLANIAVPLSCNFVGEFLSLL 399 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 + F+ S V VLAS G+VL A YSL+LY +V FG S + +D++ RE ++ P+ + Sbjct: 400 AAFEYSIIVGVLASLGMVLGAAYSLYLYNRVCFGNSSNYIIFS-RDVNRREFYVLLPLVL 458 Query: 461 LTVFFGIYPVPIRDT 475 LT+ GIYP I DT Sbjct: 459 LTILIGIYPSAIIDT 473 >gi|84872475|gb|ABC67283.1| NADH dehydrogenase subunit 4 [Haplomitrium mnioides] Length = 437 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/417 (46%), Positives = 270/417 (64%), Gaps = 3/417 (0%) Query: 55 FDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 F+ + Q +E W+ Y ++++G+DGI + V+LTT LTP IL S++ +E Sbjct: 16 FENDTAKSQFVETIRWLPYSNINFYIGIDGIPLFFVILTTSLTPIRILVGLHSVKNYKKE 75 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTF 172 YM AF + ES++I F S D +FY+F E+ LIPMF+IIGVWG + +I AAY+FFLYT Sbjct: 76 YMTAFPIRESLLIAVFRSPDPSIFYVFLESVLIPMFIIIGVWGSRQGKIKAAYQFFLYTL 135 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 GS+FML AI+ + + T+ + + ++F Q +WIAFF SF++K+PM P H L Sbjct: 136 MGSLFMLLAILFIFFRTGTTDL-QILLTTEFSERRQILLWIAFFASFSVKVPMVPVHIRL 194 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P AH +APTAGSV LAGI+ K G +G +RF +P P A+ + P I+ S+IA IY SL Sbjct: 195 PEAHAEAPTAGSVILAGILPKSGTHGFLRFSIPTSPEATLHSTPFIYTPSVIATIYTSLT 254 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q D+KK+IA+S +AH + TIG+FS G+EG++ LSHG VSSAL CVG YD Sbjct: 255 TIRQIDLKKIIAHSPVAHTNFATIGMFSLNIQGIEGSISPTLSHGPVSSALLLCVGAPYD 314 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R TR + YGGLV MP +++ + T+ANM LPGTS IGEF +++ FQ ++ VA L Sbjct: 315 RHKTRIVKYYGGLVSTMPIPSIIFLFLTLANMSLPGTSSSIGEFPILVGAFQRNSLVATL 374 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A+ G++L A YSLWLY +VVFG SK + + + DL+ RE P V + G+YP Sbjct: 375 AALGMILGAAYSLWLYNRVVFGNSKPDFIPEFSDLNRREVPTFLPFIVGVIRMGVYP 431 >gi|95928460|ref|ZP_01311208.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfuromonas acetoxidans DSM 684] gi|95135731|gb|EAT17382.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfuromonas acetoxidans DSM 684] Length = 530 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 210/507 (41%), Positives = 312/507 (61%), Gaps = 14/507 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 +N P LS++ +P +G V +F G F+G+A ++ + + SL +WS FD+ + Sbjct: 10 LNFPILSMLLLIPVVGAVVAMFLR--GDTLLKFWGLA--VTLVTAVISLPLWSRFDQTTA 65 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 +Q +E HW Y +GVDGIS+LLV+LTT + P CIL SW I+ +E++I L Sbjct: 66 KYQFVELRHWFPALNLDYVVGVDGISVLLVLLTTLVMPLCILCSWTYIKTRMKEFIIVTL 125 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++E+ ++G F+SL+ +LFYIF+E L+PM++II +WGG + YA+ KFFLYTF GSIF+L Sbjct: 126 LMETAMLGVFVSLNTVLFYIFWEGMLVPMYLIIAIWGGDRKDYASIKFFLYTFAGSIFLL 185 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +IV M T I +L F FS Q W+++A FAIK+PMFPFHTWLP AHVQA Sbjct: 186 VSIVAMYITTGTFFIPELMD-HNFAFSYQMWIFLACALGFAIKMPMFPFHTWLPAAHVQA 244 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGSV LA I+LKMGGYG +RF LP+ P A+ Y P + +SL++II +++ Q+DI Sbjct: 245 PVAGSVILASILLKMGGYGFLRFCLPMAPAATVYCMPYLIIMSLVSIIVGGYLALGQSDI 304 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+ HMG+VT+GIF +G++GAM QM++HG+ + ALF +G+IY+R H+R+I Sbjct: 305 KKLIAYSSVGHMGFVTLGIFLLNDAGIKGAMLQMINHGVTTGALFILIGLIYERTHSREI 364 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 L MP Y + +F+++++ PGT+ F+GEFLV+ F V LA G +L Sbjct: 365 SDNSKLGMFMPIYVTFLGIFSLSSLAFPGTNSFVGEFLVLFGAFDKYPLVGALAIPGAIL 424 Query: 420 SALYSLWLYRKVVF--------GVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A Y L L +K+V+ L D + RE + + V + G++P P Sbjct: 425 AAAYMLRLLQKMVWDDSDGHGHHGDDHGDEHHLTDCNFREFIQLAFLTVFVFWIGLHPTP 484 Query: 472 IRDTFSVPLSSIIENYTLKTGYSDSVK 498 + D ++ +I + ++V Sbjct: 485 LLDMMDTSVAHLIHQVDAGSAVQEAVH 511 >gi|319955929|ref|YP_004167192.1| NADH dehydrogenase subunit m [Nitratifractor salsuginis DSM 16511] gi|319418333|gb|ADV45443.1| NADH dehydrogenase subunit M [Nitratifractor salsuginis DSM 16511] Length = 508 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 207/476 (43%), Positives = 307/476 (64%), Gaps = 19/476 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLG--CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS++ F P L ++ LG + S + ++ I F+ +L++W FD FQ Sbjct: 5 LSVLIFFP-------LVAAMLGFVVKKDSIRVYGITVAAIEFLLTLWLWFAFDSNNPGFQ 57 Query: 64 MIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 IE+ + D+ +Y++GVDGIS+ +V++ +T I++ + ++ + +I L LE Sbjct: 58 FIEFIPLVPDFGINYYVGVDGISLFIVIMAAMITLLGIIALGEI--KDLKNMIITLLFLE 115 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++G FLSLD ++FY+F+E SL+PM IIG WGG +R+YAA KFFLYTF GS+ ML + Sbjct: 116 VAMVGVFLSLDAIVFYLFWEFSLVPMLYIIGAWGGEKRLYAAIKFFLYTFAGSLIMLVGM 175 Query: 183 VVMCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + + + + S+ D YA+ P S+Q W++ AFF FAIK+PMFPFHTWLP AH Sbjct: 176 LYIAYIYHSVAGVWSFSLTDWYALV-LPISVQKWLFWAFFLGFAIKVPMFPFHTWLPYAH 234 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 QAPT GSV LA ++LKMG YG +RF LPLFP AS + I +++I IIY ++V+ Q Sbjct: 235 GQAPTVGSVILAAVLLKMGTYGFVRFSLPLFPDASVLYLTPIAVIAVIMIIYTAMVAYAQ 294 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+K++IAYSSI+HMG + +GIF+ G+ G++F MLSHG+VS ALF VGVIYDR HT Sbjct: 295 KDMKQVIAYSSISHMGVIILGIFAMNPEGITGSVFLMLSHGIVSGALFLLVGVIYDRRHT 354 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 + + +GGL MP+YAV+ + MA++GLP T GF+GE+L + F+ S +A L F Sbjct: 355 KLMSEFGGLASVMPKYAVIYGITLMASVGLPLTIGFVGEYLSLAGFFRVSPILAFLGGFS 414 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 ++L A+Y L LY+K FG E+ ++LKDL+ RE + P+ + ++ G+YP P+ Sbjct: 415 IILGAVYMLSLYKKSFFGPVTKEENKKLKDLNTRELTALIPLVAIIIWLGVYPKPV 470 >gi|206560509|ref|YP_002231273.1| NADH-ubiquinone oxidoreductase subunit [Burkholderia cenocepacia J2315] gi|198036550|emb|CAR52447.1| NADH-ubiquinone oxidoreductase subunit [Burkholderia cenocepacia J2315] Length = 509 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/489 (39%), Positives = 311/489 (63%), Gaps = 7/489 (1%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + PFLS+ ++P L G ++ S R + I+ + + L + FD + Sbjct: 3 DFPFLSLAIWVPILFGAGLLRAGSDQQARRIRLIALVGAIAGLAAVVPLV--AGFDAHSA 60 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q +E W+ F S + +G+DG S+ LVVLT F T +++SW+S+ +Y +FL Sbjct: 61 AMQFVERRDWLAAFNSGWRVGIDGASLWLVVLTAFTTLVVVVASWESVTVRVAQYYASFL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L +++G F++ D LLF+IFFEA+LIP++++IG WG R+YAA KFF +F GS+ +L Sbjct: 121 ILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGRERRVYAAVKFFFISFAGSLLLL 180 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ + + T + ++ + F+ Q +++ FF +FA+K+PM+P HTWL + + Sbjct: 181 MAMLYLYAQSHTFDMA-VWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLSDVYTDG 239 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT ++ LA MLK+GGYG +RF LP+ P AS +FAP + LSL AI+YASLV++ QTD+ Sbjct: 240 PTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLVALAQTDL 297 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ CV V+ DR R+I Sbjct: 298 GKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVNVLVDRTKQREI 357 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGG+ MPR+A ++F MAN+GLPGTSGF+GEF+VIM + + + +A+ ++L Sbjct: 358 AAYGGVAGVMPRFATFTLLFAMANVGLPGTSGFVGEFMVIMGAIRFNFWIGAIAALTLIL 417 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+ ++VVFG +++ +L DL+ RE M +A++ + GI P P D Sbjct: 418 SASYTLWMLKRVVFGKVASQRIAKLADLNRREIVMFASLALIVLAVGIDPKPFTDAIDPT 477 Query: 480 LSSIIENYT 488 + +I+ + Sbjct: 478 VGRLIQEAS 486 >gi|292559482|ref|YP_003540850.1| NADH dehydrogenase subunit 4 [Hartmannella vermiformis] gi|290775735|gb|ADD62234.1| NADH dehydrogenase subunit 4 [Hartmannella vermiformis] Length = 484 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 210/470 (44%), Positives = 302/470 (64%), Gaps = 23/470 (4%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 F F G V LFS+ L SFF +++ I N +S F+ S F++ +++H Sbjct: 23 FFNFYGRLVTLFSTLL-----SFFLISVLIIFFN-------YSSFN---SQFKL-DFFHS 66 Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 + Y L +DG+S+L V LT L C L +W S +E++I L ++ ++ F Sbjct: 67 SFFNVDYSLSLDGLSVLFVFLTNLLIFLCTLLNW-SASYKLKEFLICLLFVQFFLLNVFC 125 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 D++LFY+FFEA L+P+F++IGVWG ER ++AAY+FFLYT FGS+FML AI+ + Sbjct: 126 VGDLILFYVFFEAILMPLFIMIGVWGSRERKVWAAYQFFLYTLFGSVFMLLAILFVYLH- 184 Query: 190 KTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + D Y +S FS+ Q+ +W FF FAIK+PMFP H WLP AHV+APTAGSV L Sbjct: 185 --AGFTDFYTLSYISFSLNRQFILWFLFFFGFAIKVPMFPVHIWLPEAHVEAPTAGSVLL 242 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG +RFL+PLFP+AS YF P++F SL+ ++YASL ++ Q D+KK++AYSS Sbjct: 243 AGVLLKLGTYGVLRFLIPLFPVASFYFTPLVFLFSLLGVVYASLATLTQVDLKKIVAYSS 302 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 +AHM +V +G+F + G++F MLSHGLVS LFF VG IY+R TR + YGGL Sbjct: 303 VAHMSFVVLGLFGFNIQAISGSIFLMLSHGLVSGGLFFLVGFIYERYKTRLLPYYGGLAA 362 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 MP Y+ + F+++NM LPGTS FIGEFL+++ + ++ AVL SFG+V SA YSLWL Sbjct: 363 LMPLYSFFFLSFSLSNMALPGTSSFIGEFLIMLGLISFNSVAAVLGSFGMVFSAAYSLWL 422 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 Y +++ G K ++ DL+L+E +++ + +F G YP D S Sbjct: 423 YNRLLTGPIKSLFIKFYSDLTLKEFLIMFILLFFVIFTGFYPSLFLDIMS 472 >gi|164420801|ref|YP_001648469.1| NADH dehydrogenase subunit 4 [Ephydatia muelleri] gi|158938917|gb|ABW83845.1| NADH dehydrogenase subunit 4 [Ephydatia muelleri] Length = 483 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 204/443 (46%), Positives = 285/443 (64%), Gaps = 8/443 (1%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID----YFCSYHLGVDGISILLVVLT 92 AL S ++ +W+ FD G FQ I+ + WI F VDGISI ++LT Sbjct: 31 ALEWSLFTLTATILLWASFDGG-GQFQAIKKFEWIPGIEPVFGPALFAVDGISIFFLILT 89 Query: 93 TFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 LTP CIL SW SI+ +E+++ L +E ++IG F LD++ FYI FE LIPMF+II Sbjct: 90 ALLTPICILISWNSIKFLIKEFLLCLLFMEFLLIGVFSVLDLVGFYILFEGILIPMFLII 149 Query: 153 GVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM 211 G+WG E++ A+Y FF YTF GS+FML AI + + T+ L SK +QY + Sbjct: 150 GIWGSREEKVQASYYFFFYTFIGSVFMLLAIFTLYGQTGTTDYQALCCASK-DAELQYLV 208 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 ++ FF S AIKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PL P AS Sbjct: 209 FLGFFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEAS 268 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 ++FAP+I LS++AIIY SL + Q D+K++IAYSS+AHMG VT+GIFS G+ A+F Sbjct: 269 EFFAPLIQTLSILAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIF 328 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 ML+HGLVSSALF V ++Y+R HTR + Y G+ MP Y ++M+ +AN +P + Sbjct: 329 LMLAHGLVSSALFIAVTLLYERHHTRLVKYYRGMAITMPLYGILMLTLVLANASIPLSCN 388 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 FIGEF+ +++ F+ S + +LAS G+VLSA YS++LY ++ FG + +D++ RE Sbjct: 389 FIGEFISLLAAFEYSFIIGLLASLGMVLSAGYSIYLYNRICFGFPS-RYLYFSRDINRRE 447 Query: 452 RCMVYPIAVLTVFFGIYPVPIRD 474 ++P+ L G++P I D Sbjct: 448 FYTLFPLVFLIFLLGVFPFIIID 470 >gi|323530086|ref|YP_004232238.1| proton-translocating NADH-quinone oxidoreductase subunit M [Burkholderia sp. CCGE1001] gi|323387088|gb|ADX59178.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. CCGE1001] Length = 527 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/443 (41%), Positives = 291/443 (65%), Gaps = 4/443 (0%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 F +S Q +E W F ++H+GVDGIS+ LV LT T +++SW+SI E + Sbjct: 63 FRNDVTSMQFVENIRWSPTFDIAWHVGVDGISLWLVALTALTTIIIVIASWESITERTAQ 122 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y AFL+L + G F SLD +LF++ FEA+LIP++++IG WG S R YAA KFF +F Sbjct: 123 YFGAFLMLSGFMQGVFTSLDGMLFFVSFEATLIPLYLLIGTWGQSNRSYAAVKFFFVSFL 182 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 GS+ ML +++ + + + + L+ ++ Q +++ F +F +K+PM+P HTWLP Sbjct: 183 GSLMMLMSMLYLYSQTHSFDLA-LWRETRLGTMPQVLIFLGFLAAFGVKVPMWPLHTWLP 241 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 + H+ PT +V + MLK+GGYG +RF LP+ P AS +FAP++ LSL+A++YASL++ Sbjct: 242 DVHLDGPTGAAVMIG--MLKLGGYGLLRFALPIAPQASHFFAPMMITLSLVAVVYASLLA 299 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 +VQTD+++L+AYS++AHMG VT+G+F + G GA+ QMLS+G+VS A+ C G++YDR Sbjct: 300 LVQTDMRRLLAYSTVAHMGLVTLGLFVFNRIGQAGAVVQMLSYGVVSGAMLLCTGMLYDR 359 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 T I YGG+ + MPR+A +M+F+MAN+GLPGTSGF+GEF+V+M + + + +A Sbjct: 360 TRTAAIDGYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGTIRFNFWIGAIA 419 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 + ++LSA Y+LW+Y++VVFG +V LKDL RE ++ +A+L + G+ P P Sbjct: 420 ASTLILSAAYTLWMYKRVVFGAIANARVAALKDLGKRELVLLGAMALLVLAIGVDPKPFT 479 Query: 474 DTFSVPLSSIIENYTLKTGYSDS 496 D + +++ T ++S Sbjct: 480 DAIDPSVGTLLAQSERSTRPAES 502 >gi|322417687|ref|YP_004196910.1| proton-translocating NADH-quinone oxidoreductase subunit M [Geobacter sp. M18] gi|320124074|gb|ADW11634.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter sp. M18] Length = 496 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 205/503 (40%), Positives = 309/503 (61%), Gaps = 31/503 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLF-----VWSVF 55 ++ P L+++ FLP LG ++ FS RRS A + + +FSL W + Sbjct: 3 VDFPLLTLMVFLPLLGSLLV-FSV-----RRS----AAAVRGLACVFSLAELALCAWPLI 52 Query: 56 DK--------GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKS 106 + F + E WI+ F Y LG+DGIS++LV+LT F+T +L SW Sbjct: 53 GTDPAVTRAGAPAGFFLFEDAAWIERFGIRYTLGMDGISLVLVLLTAFITVIAVLVSWNG 112 Query: 107 IQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYK 166 IQE Y L L+ + G FLSLD+ LFY+F+EA LIPM +IG+WG R+Y+A K Sbjct: 113 IQERIPLYYSLLLALQCGIQGVFLSLDLFLFYLFWEAMLIPMLFLIGIWGHGRRVYSAVK 172 Query: 167 FFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM-----SKFPFSIQYWMWIAFFCSFAI 221 FFLYTF GS+ ML +I+ + + +A+ + P+ + W++ AF SFAI Sbjct: 173 FFLYTFLGSLLMLVSIITLYLMHGAQTGSYTFALPGLIQTSVPYELGLWLYAAFLLSFAI 232 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K P+FP HTWLP+AH APTAGSV LA ++LK G YG IRF PLFP A++ F PV++F Sbjct: 233 KFPLFPLHTWLPDAHTDAPTAGSVILASLLLKTGAYGLIRFAYPLFPEAARAFTPVLYFF 292 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 ++ I Y + V+ Q D+K+L+AYSS++HMG+V +GI + + GA+ QM++HG+ + Sbjct: 293 AVFGISYGAWVAFAQKDMKRLVAYSSVSHMGFVALGIAAWSPLALSGALLQMVNHGVTTG 352 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF VG++ +R H+R++ +YGG+ +P + +VF MA+ GLPG + FIGEFLV++ Sbjct: 353 ALFAMVGMLDERTHSRELSSYGGIWGKVPVLSFFFLVFCMASAGLPGLNNFIGEFLVLVG 412 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F+ S A+ A G+VL+ +Y++ L ++V+FG K K +L+DLSLRE ++ + + Sbjct: 413 AFRVSPPAALGAFLGIVLTLVYTVRLVQEVLFG--KENKPLELQDLSLRETGVLAVLGLC 470 Query: 462 TVFFGIYPVPIRDTFSVPLSSII 484 V+ G++P P+ D F VPL ++ Sbjct: 471 AVYLGVHPAPVLDLFKVPLELLV 493 >gi|188996807|ref|YP_001931058.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sulfurihydrogenibium sp. YO3AOP1] gi|188931874|gb|ACD66504.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sulfurihydrogenibium sp. YO3AOP1] Length = 502 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 204/430 (47%), Positives = 281/430 (65%), Gaps = 20/430 (4%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLT--TFLTPFCILSSWKS-IQEN 110 +D Q E Y WI F SY +GVD +S+ LV LT +F+ F W + I++ Sbjct: 57 YDPTGYKIQFYEKYAWIPQFGISYEVGVDALSLTLVWLTALSFVAAFV----WSTNIEKR 112 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 +EY IAFL+LE+ IG F++ D++ FY+F+E LIPMF+IIGVWG +ERIYAA KFF+Y Sbjct: 113 IKEYFIAFLILEAACIGVFVAFDLVAFYVFWEVMLIPMFLIIGVWGYAERIYAATKFFIY 172 Query: 171 TFFGSIFMLFAIVVMC----WEKK--TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 TFFGS+F+L ++ M E ++S DL + PF+++ ++ FAIK+P Sbjct: 173 TFFGSLFLLIGVIGMYIYNYMENNILSTSYFDLLKL-HLPFNLELIFFLLLALGFAIKVP 231 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 M+PFHTWLP AHVQAPT+GSV LA ++LKMG YG +RF LP FP AS+YF PVIF LS+I Sbjct: 232 MWPFHTWLPAAHVQAPTSGSVILAAVLLKMGTYGFVRFSLPWFPEASKYFVPVIFALSVI 291 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 AIIY +++++ QT IK+LIAYSS++HMG+VT+G F+ GV GA+ M+SHGL S ALF Sbjct: 292 AIIYTAMMAIAQTHIKRLIAYSSVSHMGFVTMGTFALNPEGVNGAIITMISHGLTSGALF 351 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G IY+RLH+ ++ GG+ +P +A + M+ MA+ GLPG SGF+GEFL ++ F+ Sbjct: 352 LAAGFIYERLHSYEMKDLGGMAKFVPVFATLFMISAMASAGLPGLSGFVGEFLSLVGTFK 411 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVF-----GVSKCEKVQQLKDLSLRERCMVYPIA 459 S AVLA +V+ A Y+LWLY+K +F K + +LKDL+ E P Sbjct: 412 VSILTAVLAGLSLVVGAAYTLWLYKKTMFEEELLSEEKIIEYSKLKDLNTAELWSFLPFV 471 Query: 460 VLTVFFGIYP 469 + GIYP Sbjct: 472 IFMFVIGIYP 481 >gi|63025148|ref|YP_232813.1| NADH dehydrogenase subunit 4 [Tethya actinia] gi|37961482|gb|AAP59072.1| NADH dehydrogenase subunit 4 [Tethya actinia] Length = 482 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 202/429 (47%), Positives = 277/429 (64%), Gaps = 8/429 (1%) Query: 52 WSVFDKGRSSFQMIEYYHWI----DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 W+ FD FQ ++ + WI F GVDGISI ++LT LTP CIL SW SI Sbjct: 46 WAFFDV-EGQFQAVKKFEWILSSEPVFGFALFGVDGISIFFIILTALLTPICILISWNSI 104 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYK 166 + +E+++ L +E +++G F LD++ FY+ FE LIPMF+IIG+WG E+I A+Y Sbjct: 105 KFLVKEFLLCLLFMEILLMGVFTVLDLVGFYVLFEGILIPMFLIIGIWGSREEKIQASYY 164 Query: 167 FFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMF 226 FF YTF GS+FML I + T+ L + K +QY +++ FF S AIKIP Sbjct: 165 FFFYTFIGSVFMLLGIFTLYSYAGTTDYQALCCL-KIESKLQYLIFLGFFLSLAIKIPKM 223 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PL P AS+YF P+I LSL AI Sbjct: 224 PFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPDASEYFGPLIQTLSLFAI 283 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 IY SL + Q D+K++IAYSS+AHMG V +G+FS G+ A+F ML+HGLVSSALF Sbjct: 284 IYGSLTTCRQIDLKRIIAYSSVAHMGLVVLGLFSHTIQGLVAAVFLMLAHGLVSSALFII 343 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 V ++YDR HTR + Y G+V MP + V+M+V +AN +P + F+GEF +++ F+ S Sbjct: 344 VTLLYDRFHTRLVKYYRGIVVTMPLFGVLMLVLVLANASIPLSCNFVGEFFSLLAAFEYS 403 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 V VLAS G+VLSA YS++LY +V FG + + +DL+ RE + P+ VL + G Sbjct: 404 FIVGVLASLGMVLSAGYSIYLYNRVCFG-EASKYLSFSRDLNRREFYTLMPLVVLIILMG 462 Query: 467 IYPVPIRDT 475 ++P + D Sbjct: 463 VFPFSVVDV 471 >gi|254496135|ref|ZP_05109033.1| NADH dehydrogenase I, M subunit [Legionella drancourtii LLAP12] gi|254354622|gb|EET13259.1| NADH dehydrogenase I, M subunit [Legionella drancourtii LLAP12] Length = 419 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 188/402 (46%), Positives = 277/402 (68%), Gaps = 12/402 (2%) Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S+LL+VL+ F IL++W SI +Y+ AFL+++ +++G F +LD +LFYIF+EA Sbjct: 1 MSLLLIVLSIFTNLVVILATWDSITNRVSQYLAAFLIMQGLLVGVFSALDAILFYIFWEA 60 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF 203 +LIPM++IIG+WG R+YAA KFFLYTF GS+ ML + + + + T +I LYA+ K Sbjct: 61 TLIPMYLIIGIWGSDNRVYAAIKFFLYTFLGSVLMLASFLYIGYIAGTFNIEALYAI-KL 119 Query: 204 PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFL 263 + Q ++IAFF FAIKIPMFP HTWLP+AH +AP GS+ LA I+LK+G YG IRF Sbjct: 120 NMTAQTLIFIAFFLGFAIKIPMFPVHTWLPDAHTEAPAGGSIVLAAILLKLGAYGFIRFS 179 Query: 264 LPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF---- 319 LP+ P A +A V+ LSL+A++Y +LV+++Q D+K+LIAYSSI+HMG+VT+G F Sbjct: 180 LPIVPDACSKYAGVMIALSLVAVVYIALVAIIQKDMKRLIAYSSISHMGFVTLGCFAIFA 239 Query: 320 ----SGMKSG---VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 +G+ + +EGA+ M+SH VSSA+F VG IYDR+HTR + +GG+V+ MP + Sbjct: 240 IAKQTGLSNAGLILEGAIVVMISHAFVSSAMFAGVGFIYDRMHTRRLVDFGGIVNTMPIF 299 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A M+F MAN GLPGTSGF+GEF+VI+ + + A+ ++ +A Y+LW+Y++V+ Sbjct: 300 ASFFMLFCMANAGLPGTSGFVGEFMVIVGSIKAGFWITFWAASTLITAAAYNLWMYKRVI 359 Query: 433 FGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 FG +K+ LKDLS E +A++ + G+YP P+ + Sbjct: 360 FGKVANDKIAALKDLSSFELSAYVLLALMVIAMGVYPKPLLE 401 >gi|170733427|ref|YP_001765374.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia cenocepacia MC0-3] gi|169816669|gb|ACA91252.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia cenocepacia MC0-3] Length = 509 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/489 (39%), Positives = 310/489 (63%), Gaps = 7/489 (1%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + PFLS+ ++P L G ++ S R + I+ + + L + FD + Sbjct: 3 DFPFLSLAIWVPILFGAVLLRAGSDQHSHRIRLIALVGAIAGLAAVVPLI--AGFDAHSA 60 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q +E W+ F + +G+DG S+ LVVLT F T +++SW+S+ +Y +FL Sbjct: 61 AMQFVERRDWLAAFNAGWRVGIDGASLWLVVLTAFTTLVVVVASWESVTVRVAQYYASFL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L +++G F++ D LLF+IFFEA+LIP++++IG WG R+YAA KFF +F GS+ +L Sbjct: 121 ILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGRERRVYAAVKFFFISFAGSLLLL 180 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ + + T + ++ + F+ Q +++ FF +FA+K+PM+P HTWL + + Sbjct: 181 MAMLYLYAQSHTFDMA-VWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLSDVYTDG 239 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT ++ LA MLK+GGYG +RF LP+ P AS +FAP + LSL AI+YASL+++ QTD+ Sbjct: 240 PTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDL 297 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ CV V+ DR R+I Sbjct: 298 GKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVNVLVDRTRQREI 357 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGG+ MPR+A ++F MAN+GLPGTSGF+GEF+VIM + + + +A+ ++L Sbjct: 358 AAYGGVAGVMPRFATFTLLFAMANVGLPGTSGFVGEFMVIMGAIRFNFWIGAIAALTLIL 417 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+ ++VVFG +++ +L DL+ RE M +A++ + GI P P D Sbjct: 418 SASYTLWMLKRVVFGKVASQRIAKLADLNRREIVMFASLALIVLAVGIDPKPFTDAIDPT 477 Query: 480 LSSIIENYT 488 + +I+ + Sbjct: 478 VGKLIQEAS 486 >gi|164420991|ref|YP_001648612.1| NADH dehydrogenase subunit 4 [Halisarca dujardini] gi|158668145|gb|ABW76604.1| NADH dehydrogenase subunit 4 [Halisarca dujardini] Length = 489 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 205/448 (45%), Positives = 289/448 (64%), Gaps = 13/448 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH--------LGVDGISIL 87 + L S + F ++ +W+ FD G SFQ I ++WI + VDGIS+ Sbjct: 34 IGLEWSLLTFTATILLWASFDGG--SFQTINLFNWIGSLMAPSPTMEVNVVFAVDGISVF 91 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 +VLT L P C+L SW SI+ +E+++ ++E +++G F LD++ FYI FE LIP Sbjct: 92 FLVLTGLLIPICVLISWNSIKYLIKEFLLCLFLIEVLLMGVFTVLDLVGFYILFEGILIP 151 Query: 148 MFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS 206 MF+IIG+WG E++ AAY FF YTF GS+FML I V+ + S+ +F S Sbjct: 152 MFLIIGIWGSREEKVQAAYYFFFYTFIGSVFMLLGIFVL-YSLSGSTDYQTLCCLQFESS 210 Query: 207 IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 +QY+++ FF S A+KIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PL Sbjct: 211 VQYFVFGGFFFSLAVKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPL 270 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 P AS++F+P I LS++A+IY SL + Q D+K++IAYSS+AHMG VT+GIFS SG+ Sbjct: 271 LPDASEFFSPFIQTLSILAVIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTISGL 330 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 A++ ML+HGLVSSALF V +Y+R TR I Y G+ MP ++ +M+VF +AN+G+ Sbjct: 331 MAAIYLMLAHGLVSSALFIIVTFLYERHSTRLIKYYRGMTITMPIFSALMLVFILANIGI 390 Query: 387 PGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD 446 P + F+GEFL + S F+ S V VLAS G+VLS YS++LY +V FGV + + +D Sbjct: 391 PLSCNFVGEFLSLXSAFEYSFVVGVLASLGMVLSGGYSMYLYNRVCFGVPS-KYLSFSRD 449 Query: 447 LSLRERCMVYPIAVLTVFFGIYPVPIRD 474 L+ RE ++P+ LT G +P I D Sbjct: 450 LTRREVYSLFPLVFLTYLLGAFPSIITD 477 >gi|164421000|ref|YP_001648495.1| NADH dehydrogenase subunit 4 [Topsentia ophiraphidites] gi|158938930|gb|ABW83857.1| NADH dehydrogenase subunit 4 [Topsentia ophiraphidites] Length = 481 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 206/443 (46%), Positives = 283/443 (63%), Gaps = 8/443 (1%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID----YFCSYHLGVDGISILLVVLT 92 AL S ++ +W+ FD G FQ I + WI F VDGISI ++LT Sbjct: 31 ALEWSLFTLTATILLWASFD-GSGQFQAIINFEWIPGTEPVFGPVLFAVDGISIFFLILT 89 Query: 93 TFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 L P CIL SW S + +E+++ L +E +++G F LD++ FYI FE LIPMF+II Sbjct: 90 AVLIPICILISWNSPRFLIKEFLLCLLAIEVLLLGVFTVLDLIGFYILFEGILIPMFLII 149 Query: 153 GVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM 211 G+WG E++ A+Y FF YTF GS+FML AI ++ T+ L + + + QY++ Sbjct: 150 GIWGSREEKVQASYYFFFYTFLGSVFMLLAIFILYSHAGTTDYQALCGL-QIKKNFQYFI 208 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 ++ FF S AIKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PL P AS Sbjct: 209 FLGFFLSLAIKIPKIPFHIWLPLAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEAS 268 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 ++FAP+I LSL+AIIY SL + Q D+K++IAYSS+AHMG VT+GIFS G+ A+F Sbjct: 269 KFFAPLILTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTVQGLVAAIF 328 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 ML+HGLVSSALF V +YDR HTR I Y G+ MP + V M+ +AN +P + Sbjct: 329 LMLAHGLVSSALFIAVTFLYDRHHTRIIKYYRGMAITMPLFGVSMLTLMLANASIPLSCN 388 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 F+GEFL +++ F+ S V VLAS G+VLSA YS++LY + FG + + ++ +DL+ RE Sbjct: 389 FVGEFLSLLAAFEYSIIVGVLASLGIVLSAGYSIYLYNRACFG-APSKYLKFSRDLNRRE 447 Query: 452 RCMVYPIAVLTVFFGIYPVPIRD 474 + P+ +L GI+P I D Sbjct: 448 LYSIIPLVILIYLIGIFPSIIID 470 >gi|107028748|ref|YP_625843.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia cenocepacia AU 1054] gi|116690093|ref|YP_835716.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia cenocepacia HI2424] gi|105897912|gb|ABF80870.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia AU 1054] gi|116648182|gb|ABK08823.1| NADH dehydrogenase subunit M [Burkholderia cenocepacia HI2424] Length = 509 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/489 (39%), Positives = 310/489 (63%), Gaps = 7/489 (1%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + PFLS+ ++P L G ++ S R + I+ + + L + FD + Sbjct: 3 DFPFLSLAIWVPILFGAGLLRAGSDQHSRRIRLIALVGAIAGLAAVVPLI--AGFDAHSA 60 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q +E W+ F + +G+DG S+ LVVLT F T +++SW+S+ +Y +FL Sbjct: 61 AMQFVERRDWLAAFNAGWRVGIDGASLWLVVLTAFTTLVVVVASWESVTVRVAQYYASFL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L +++G F++ D LLF+IFFEA+LIP++++IG WG R+YAA KFF +F GS+ +L Sbjct: 121 ILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGRERRVYAAVKFFFISFAGSLLLL 180 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A++ + + T + ++ + F+ Q +++ FF +FA+K+PM+P HTWL + + Sbjct: 181 MAMLYLYAQSHTFDMA-VWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLSDVYTDG 239 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT ++ LA MLK+GGYG +RF LP+ P AS +FAP + LSL AI+YASL+++ QTD+ Sbjct: 240 PTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDL 297 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ CV V+ DR R+I Sbjct: 298 GKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVNVLVDRTRQREI 357 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGG+ MPR+A ++F MAN+GLPGTSGF+GEF+VIM + + + +A+ ++L Sbjct: 358 AAYGGVAGVMPRFATFTLLFAMANVGLPGTSGFVGEFMVIMGAIRFNFWIGAIAALTLIL 417 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+ ++VVFG +++ +L DL+ RE M +A++ + GI P P D Sbjct: 418 SASYTLWMLKRVVFGKVASQRIAKLADLNRREIVMFASLALIVLAVGIDPKPFTDAIDPT 477 Query: 480 LSSIIENYT 488 + +I+ + Sbjct: 478 VGKLIQEAS 486 >gi|164421077|ref|YP_001648622.1| NADH dehydrogenase subunit 4 [Agelas schmidti] gi|158938992|gb|ABW83915.1| NADH dehydrogenase subunit 4 [Agelas schmidti] Length = 490 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/472 (44%), Positives = 301/472 (63%), Gaps = 10/472 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L +V L F+ +F+IL + R + +AL S + ++ +W+ FD G FQ I Sbjct: 2 LGLVFLLNFVNIFLILITPRENISR--LWKIALQGSLLTLTATILLWASFD-GEGLFQEI 58 Query: 66 EYYHWID----YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 + + W+ F VDGIS+ ++LT LTP CIL SW SI+ +E+++ L + Sbjct: 59 KKFEWVPGVEPIFSPALFAVDGISVFFLILTALLTPICILISWGSIKFLIKEFLLCVLFI 118 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLF 180 E +++G F LD++ FYI FE+ LIPMF+IIGVWG E++ AAY FF YTF GS+FML Sbjct: 119 EILLMGVFTILDLVGFYILFESILIPMFLIIGVWGSREEKVQAAYYFFFYTFIGSVFMLL 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI + + ++ + +F IQY++++ FF SFAIKIP PFH WLP AHV+AP Sbjct: 179 AIFTL-YNSAGTTDYQILCCLEFNKEIQYFVFLGFFISFAIKIPKIPFHIWLPQAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGSV LAG++LK+GGYG IRF PL P AS++FAP+I LSL+AIIY SL + Q D+K Sbjct: 238 VAGSVILAGVLLKLGGYGFIRFSWPLLPNASEFFAPLIQTLSLLAIIYGSLTTCRQVDLK 297 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 ++IAYSS+AHMG VT+ +FS G+ A++ ML+HGLVSSALF V +Y+R HTR + Sbjct: 298 RIIAYSSVAHMGLVTLSLFSHTVQGLVSAIYLMLAHGLVSSALFIAVTFLYERHHTRLVK 357 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 Y G+V MP + V+MM +AN +P + FIGEFL I + F+ S V +AS G+VLS Sbjct: 358 YYRGMVVTMPLFGVLMMALILANASIPLSCNFIGEFLSIFAAFEYSFLVGAIASLGMVLS 417 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A YS++LY +V FG + + +DL+ E ++ + L GI+P+P+ Sbjct: 418 AGYSIYLYNRVCFG-APSNYLHYSRDLNRCEFYTLFTLVFLIYLMGIFPLPV 468 >gi|209518749|ref|ZP_03267564.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. H160] gi|209500791|gb|EEA00832.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. H160] Length = 518 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 191/498 (38%), Positives = 317/498 (63%), Gaps = 5/498 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M LP LS++ ++P + FV+L + R+ + +G + F+ + + + F + Sbjct: 1 MPLPLLSLLIWIPIVAGFVVLRAGSDAARNRTRWLALIG-AVAGFLPVIPLVANFRNDVT 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q +E W F ++H+G+DGIS+ LV LT T +++SW+SI + +Y AFL Sbjct: 60 SMQFVENVRWSPTFDIAWHVGIDGISLWLVALTALTTIIIVIASWESITQRTAQYFGAFL 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L + G F SLD ++F+I FEA+LIP++++IG +G R YAA KFF +F GS+ ML Sbjct: 120 MLSGFMQGVFTSLDGMMFFIAFEATLIPLYLLIGTYGQKNRTYAAVKFFFVSFLGSLMML 179 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + + + ++ + Q +++ F +F +K+PM+P HTWLP+ H+ Sbjct: 180 MSLLYLYSQTHSFDLA-VWREAHLDMVPQALIFLGFLAAFGVKVPMWPLHTWLPDVHLDG 238 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT +V + MLK+GGYG +RF LP+ P AS +FAP++ LSL+A+IY+SL+++VQTD+ Sbjct: 239 PTGAAVMIG--MLKIGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYSSLLALVQTDM 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 ++L+AYS++AHMG VT+G+F + G GA+ QM+S+G+VS A+ C G++YDR T I Sbjct: 297 RRLLAYSTVAHMGLVTLGLFVFNRFGQSGAIVQMISYGVVSGAMLLCTGMLYDRTKTASI 356 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGG+ + MPR+A +M+F+MAN+GLPGTSGF+GEF+V+M + + + +A+ ++L Sbjct: 357 AEYGGVANTMPRFAAFVMLFSMANIGLPGTSGFVGEFMVLMGAIRFNFWIGAIAATTLIL 416 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+Y++V+FG +V +LKDL RE ++ +A+L + G+ P P D Sbjct: 417 SAAYTLWMYKRVIFGAIANARVAKLKDLGKREFVLLGAMALLVLAIGLDPKPFTDAIDPS 476 Query: 480 LSSIIENYTLKTGYSDSV 497 + +++ +D+V Sbjct: 477 VGTLLAQSERSALPADAV 494 >gi|208780256|ref|ZP_03247598.1| proton-translocating NADH-quinone oxidoreductase, chain m family [Francisella novicida FTG] gi|208743905|gb|EDZ90207.1| proton-translocating NADH-quinone oxidoreductase, chain m family [Francisella novicida FTG] Length = 529 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 205/516 (39%), Positives = 309/516 (59%), Gaps = 47/516 (9%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MNL LS++ +LP +G FV+L + + VAL S + + + + FD Sbjct: 1 MNLGNYLLSLIIWLPIVGGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYS 60 Query: 59 RSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 S+ Q E W F Y LGVDG S+L +VLT+F T +L++W SI+ R+Y Sbjct: 61 SSAMQFQESVKWFKVFGMHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQY 120 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+ + G F + D +L+Y+F+EA LIP + IG+WGG + YAA K+F+YTFFG Sbjct: 121 MAIFLITCGLTNGVFCATDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFG 180 Query: 175 SIFMLFAIVVM------------------------CWEKKTSSIIDLYAMSKFPFSIQYW 210 S+F+L AI+ + W ++ ID KF + Q+ Sbjct: 181 SVFLLAAILYIQTRVAASPTHFLVNQDTYSIQNFIAWATQSQGFID---SVKFTLTAQWL 237 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ AFF +FA+KIPM+PFH+WLP+AH +AP GSV LA +MLK+G YG +RF +P+ P Sbjct: 238 VFGAFFLAFAVKIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEV 297 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS---------- 320 + V+ +SLIAI+Y +V++ QTD+K+LIAYSSI+HMG VT+G+FS Sbjct: 298 TASLEYVLIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPV 357 Query: 321 ----GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 + ++GA+FQM++H S +F +G +Y R+HTR+I + G+ MP +A Sbjct: 358 LGTTHAQLALQGAVFQMIAHAFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFF 417 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 ++F MAN+GLPGTSGF+GEF+++++VFQ S +A++A +V++ +Y+LW+Y++V FG Sbjct: 418 LLFCMANVGLPGTSGFVGEFMILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFFGEV 477 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +V L DL+ E + +AV T+FFG YP PI Sbjct: 478 VSTQVASLTDLNRMELFVFILLAVPTLFFGFYPEPI 513 >gi|254375037|ref|ZP_04990517.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151572755|gb|EDN38409.1| conserved hypothetical protein [Francisella novicida GA99-3548] Length = 529 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 205/516 (39%), Positives = 309/516 (59%), Gaps = 47/516 (9%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MNL LS++ +LP +G FV+L + + VAL S + + + + FD Sbjct: 1 MNLGNYLLSLIIWLPIVGGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYS 60 Query: 59 RSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 S+ Q E W F Y LGVDG S+L +VLT+F T +L++W SI+ R+Y Sbjct: 61 SSAMQFQESVKWFKVFGMHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQY 120 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+ + G F + D +L+Y+F+EA LIP + IG+WGG + YAA K+F+YTFFG Sbjct: 121 MAIFLITCGLTNGVFCATDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFG 180 Query: 175 SIFMLFAIVVM------------------------CWEKKTSSIIDLYAMSKFPFSIQYW 210 S+F+L AI+ + W ++ ID KF + Q+ Sbjct: 181 SVFLLAAILYIQTRVAASPTHFLVNQDTYSIQNFIAWATQSQGFID---SVKFTLTAQWL 237 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ AFF +FA+KIPM+PFH+WLP+AH +AP GSV LA +MLK+G YG +RF +P+ P Sbjct: 238 VFGAFFLAFAVKIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEV 297 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS---------- 320 + V+ +SLIAI+Y +V++ QTD+K+LIAYSSI+HMG VT+G+FS Sbjct: 298 TASLEYVLIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPV 357 Query: 321 ----GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 + ++GA+FQM++H S +F +G +Y R+HTR+I + G+ MP +A Sbjct: 358 LGTTHAQLALQGAVFQMIAHAFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFF 417 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 ++F MAN+GLPGTSGF+GEF+++++VFQ S +A++A +V++ +Y+LW+Y++V FG Sbjct: 418 LLFCMANVGLPGTSGFVGEFMILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFFGEV 477 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +V L DL+ E + +AV T+FFG YP PI Sbjct: 478 VSTQVASLTDLNRMELFVFILLAVPTLFFGFYPEPI 513 >gi|317134244|ref|YP_004123488.1| NADH dehydrogenase subunit 4 [Halisarca sp. DVL-2010] gi|315141535|gb|ADT81739.1| NADH dehydrogenase subunit 4 [Halisarca sp. DVL-2010] Length = 485 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 204/444 (45%), Positives = 289/444 (65%), Gaps = 9/444 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL----GVDGISILLVVL 91 + L S + F ++ +W+ FD G SFQ I + WI + + VDGIS+ +VL Sbjct: 34 IGLEWSLLTFTATILLWASFDGG--SFQTINLFSWILNLMTSSVNIVFAVDGISVFFLVL 91 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 T L P C+L SW SI+ +E+++ +E +++G F LD++ FYI FE LIPMF+I Sbjct: 92 TGLLIPICVLISWNSIKYLIKEFLLCLFFIEVLLMGVFTVLDLVGFYILFEGILIPMFLI 151 Query: 152 IGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW 210 IG+WG E++ AAY FF YTF GS+FML I V+ + S+ +F S+QY+ Sbjct: 152 IGIWGSREEKVQAAYYFFFYTFIGSVFMLLGIFVL-YSLSGSTDYQTLCCLQFENSVQYF 210 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ FF S A+KIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PL P A Sbjct: 211 VFGGFFFSLAVKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPDA 270 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 S++F+P+I LS++A+IY SL + Q D+K++IAYSSIAHMG VT+GIFS G+ A+ Sbjct: 271 SEFFSPLIQTLSVLAVIYGSLTTCRQVDLKRIIAYSSIAHMGLVTLGIFSHTLYGLMAAI 330 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 + ML+HGLVSSALF V +Y+R TR I Y G+ MP ++ +M++F +AN+G+P + Sbjct: 331 YLMLAHGLVSSALFIIVTFLYERHSTRLIKYYRGMTITMPIFSALMLLFILANIGIPLSC 390 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 F+GEFL + S F+ S V VLAS G+VLS YS++LY +V FGV + + +DL+ R Sbjct: 391 NFVGEFLSLFSAFEYSFVVGVLASLGMVLSGGYSMYLYNRVCFGVPS-KYLSFSRDLTRR 449 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRD 474 E ++P+ LT G++P I D Sbjct: 450 EVFSLFPLVFLTYLLGVFPSIITD 473 >gi|219847954|ref|YP_002462387.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroflexus aggregans DSM 9485] gi|219542213|gb|ACL23951.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroflexus aggregans DSM 9485] Length = 525 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/499 (42%), Positives = 311/499 (62%), Gaps = 36/499 (7%) Query: 4 PFLSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK---- 57 P LS++ +LP G V+LF + RR V+L + F+ SL + F+ Sbjct: 7 PLLSLILWLPAAGALVLLFVPRANAELARR----VSLATMAVVFLLSLLLPLRFETNPLQ 62 Query: 58 ----GRSS-FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 G S Q +E W+ +Y LG+DGIS+ LV+LTTFL P +LS+W S+ ++ Sbjct: 63 TTVVGASPVMQFVEEVPWLPIVGATYSLGIDGISLWLVMLTTFLGPIVVLSTWDSVHKDV 122 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 R + I L+L++ +IG FL+ D+LLFY+F+E +LIPM +IG+WG RIYAA KFFLYT Sbjct: 123 RNFQILLLILQTAMIGVFLAQDLLLFYLFWEFTLIPMTFLIGIWGSQNRIYAARKFFLYT 182 Query: 172 FFGSIFMLFAIVVMCWEKKTS-SIIDLYAMSKFPFS----------------IQYWMWIA 214 F GS+FML A++ + + + + I+ F FS + ++ A Sbjct: 183 FAGSVFMLLALIALHILHRNAIAEIEPGFRGTFSFSRFVSDLRAGRLTLDSLTERLLFGA 242 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF +FA+K+P++PFHTWLP+AHV+APT GSV LAG++LK+GGYG IR+ L LFP ASQ+ Sbjct: 243 FFLAFAVKVPLWPFHTWLPDAHVEAPTTGSVVLAGVLLKLGGYGMIRYNLTLFPAASQWA 302 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 AP + L++I IIY + V+ Q+D+KKL+AYSS++HMG+V +GIF+ G+ GA+ QM+ Sbjct: 303 APALAILAVIGIIYGAAVAFAQSDMKKLVAYSSVSHMGFVVLGIFALNTEGISGAVLQMV 362 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HGL +SALF VGV+Y+R HTR++ AYGGL MP +A ++ +++ GLPG +GF+G Sbjct: 363 NHGLSTSALFLMVGVLYERRHTRELAAYGGLWKVMPVFAAFSLLVALSSAGLPGLNGFVG 422 Query: 395 EFLVIMSVFQNSNTVAVLASF---GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 EF +I F++ + +F GVVL+A Y L L+R + G +L DL+ RE Sbjct: 423 EFTIITGAFRSPLLGWIYVAFAVGGVVLAAAYLLKLFRSIFMGEVHQPDNTKLPDLNRRE 482 Query: 452 RCMVYPIAVLTVFFGIYPV 470 +++ V GIYPV Sbjct: 483 LTTFALLSIPIVLIGIYPV 501 >gi|115352159|ref|YP_773998.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ambifaria AMMD] gi|115282147|gb|ABI87664.1| NADH dehydrogenase subunit M [Burkholderia ambifaria AMMD] Length = 509 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/489 (39%), Positives = 310/489 (63%), Gaps = 7/489 (1%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + PFLS+ ++P L G ++ S R + ++ + + L + FD + Sbjct: 3 DFPFLSLAIWVPILFGACLLRAGSDHHPHRTRLIALVGALAGLAAVVPLV--TGFDSHSA 60 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q E W+ F + +G+DG S+ LVVLT F T +++SW+S+ +Y +FL Sbjct: 61 AMQFTETRDWLAAFNAGWRVGIDGASLWLVVLTAFTTLVVVIASWESVTMRVAQYYASFL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L +++G F++ D LLF+IFFEA+LIP++++IG WG R+YAA KFF +F GS+ +L Sbjct: 121 ILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGREHRVYAAVKFFFISFAGSLLLL 180 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + K + ++ + + F+ Q +++ FF +FA+K+PM+P HTWL + + Sbjct: 181 -MAMLYLFAKSHTFDMNAWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDG 239 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT ++ LA MLK+GGYG +RF LP+ P AS +FAP + LSL AI+YASL+++ QTD+ Sbjct: 240 PTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDL 297 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ CV V+ DR R+I Sbjct: 298 GKLLAYSTVAHMGIVTLGLFLFNQIGVEGAIVQLVSYGFVAGAMLLCVSVLVDRTKQREI 357 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGG+ MPR+A ++F MAN+GLPGTSGF+GEF+VIM + + + +A+ ++L Sbjct: 358 GAYGGVAGVMPRFATFALLFAMANVGLPGTSGFVGEFMVIMGAIRVNFWIGAIAALTLIL 417 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+ ++VVFG +++ +L DLS RE M +A++ + G+ P P D Sbjct: 418 SASYTLWMVKRVVFGKIASQRIAKLADLSRREIVMFASLALIVLMVGVDPKPFTDAIDPT 477 Query: 480 LSSIIENYT 488 ++ +IE+ + Sbjct: 478 VARLIEDAS 486 >gi|134301258|ref|YP_001121226.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|134049035|gb|ABO46106.1| NADH dehydrogenase I subunit M [Francisella tularensis subsp. tularensis WY96-3418] Length = 529 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 205/516 (39%), Positives = 308/516 (59%), Gaps = 47/516 (9%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MNL LS++ +LP +G FV+L + + VAL S + + + + FD Sbjct: 1 MNLGNYLLSLIIWLPIVGGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYS 60 Query: 59 RSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 S+ Q E W F Y LGVDG S+L +VLT+F T +L++W SI+ R+Y Sbjct: 61 SSAMQFQESVKWFKVFGMHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQY 120 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+ + G F + D +L+Y+F+EA LIP V IG+WGG + YAA K+F+YTFFG Sbjct: 121 MAIFLITCGLTNGVFCATDSILYYVFWEALLIPTCVGIGIWGGKHKAYAAVKYFMYTFFG 180 Query: 175 SIFMLFAIVVM------------------------CWEKKTSSIIDLYAMSKFPFSIQYW 210 S+F+L AI+ + W ++ ID KF + Q+ Sbjct: 181 SVFLLAAILYIQTRVAASPTHFLVNQDTYSIQNFIAWATQSQGFID---SVKFTLTAQWL 237 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ AFF +FA+KIPM+PFH+WLP+AH +AP GSV LA +MLK+G YG +RF +P+ P Sbjct: 238 VFGAFFLAFAVKIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEV 297 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS---------- 320 + V+ +SLIAI+Y +V++ QTD+K+LIAYSSI+HMG VT+G+FS Sbjct: 298 TASLEYVLIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPV 357 Query: 321 ----GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 + ++GA+FQM++H S +F +G +Y R+HTR+I + G+ MP +A Sbjct: 358 LGTTHAQLALQGAVFQMIAHAFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFF 417 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 ++F MAN+GLPGTSGF+GEF+++++VFQ S +A++A +V++ +Y+LW+Y++V FG Sbjct: 418 LLFCMANVGLPGTSGFVGEFMILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFFGEV 477 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +V L DL+ E + +AV T+ FG YP PI Sbjct: 478 VSTQVASLTDLNRMELFVFILLAVPTLLFGFYPEPI 513 >gi|225631325|ref|ZP_03787999.1| NADH dehydrogenase I, M subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590976|gb|EEH12184.1| NADH dehydrogenase I, M subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 480 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 207/454 (45%), Positives = 299/454 (65%), Gaps = 8/454 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL + + F+ S+ FD + FQ + Y + +G+DGIS+L ++LTTFL Sbjct: 32 LALFFAVLPFLLSIVACIEFDYNDADFQFVSYP-----IRNVGIGIDGISLLFLLLTTFL 86 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 CIL + K + YM FL+LES+V+G F+SL+ + FY+FFEA LIPMF IIG+W Sbjct: 87 FVICILYNCKMSYTTLKAYMALFLLLESVVVGFFVSLNAISFYVFFEAVLIPMFFIIGIW 146 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM-SKFPFSIQYWMWIA 214 GG R+YA +K FLYT GS+ L +V + T +I L + +Q +WIA Sbjct: 147 GGKHRVYATFKLFLYTLTGSLLFLLGLVYIYSTFGTFNIQKLATLVPSLDLEVQSLLWIA 206 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF SFAIK+PMFPFHTWLP+AHVQ+PT+GSV LAG+++KMGGYG +RF +P+ P AS YF Sbjct: 207 FFISFAIKVPMFPFHTWLPDAHVQSPTSGSVILAGLLIKMGGYGFLRFSIPMLPQASLYF 266 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 + + LS+IA+IYASLV+ Q DIKKLIAYSSIAHMG VT G+FS + GV G++FQM+ Sbjct: 267 SNFVVVLSIIAVIYASLVAFAQDDIKKLIAYSSIAHMGIVTAGLFSFCEEGVLGSIFQMI 326 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGL+S+ALF CVG++Y R T +I Y G+V+ MP++ + ++F+MA++GLPGTSGFIG Sbjct: 327 SHGLISAALFLCVGMLYTRTGTLEIAKYFGIVNTMPKFGFMFILFSMASIGLPGTSGFIG 386 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFL ++ +F++ + G +LSA+Y L L +++++GVS + + L E + Sbjct: 387 EFLAMVGMFKSIGFFTGFIALGTILSAVYMLNLCKQIIWGVSYSKLLNN--RLDSIEFSV 444 Query: 455 VYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 + +AV + G YP + +++++ Y Sbjct: 445 LILLAVFVILLGFYPTLALNYLKPCMANLLVKYN 478 >gi|152990050|ref|YP_001355772.1| NADH dehydrogenase subunit M [Nitratiruptor sp. SB155-2] gi|151421911|dbj|BAF69415.1| NADH-quinone oxidoreductase, chain M [Nitratiruptor sp. SB155-2] Length = 508 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/453 (43%), Positives = 293/453 (64%), Gaps = 12/453 (2%) Query: 40 ISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPF 98 ++ I F SL +W ++D SFQ +E I +Y +Y LGVDGIS+ L+VL+TF+T Sbjct: 34 VAAIEFALSLVLWLMYDYSNGSFQFVEQLPLIPEYGINYFLGVDGISLFLIVLSTFITLI 93 Query: 99 CILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS 158 ++S +I++N + +I+ L LE ++G F++LD ++FYIF+E SL+PM IIG WG Sbjct: 94 GLIS--LTIEKNVKNMIISLLFLEMTMVGVFVALDAVIFYIFWELSLVPMLYIIGYWGSE 151 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF-----PFSIQYWMWI 213 R+YAA KFFLYTFFGS+ ML ++ M + ++ +A+ + P+ Q W+++ Sbjct: 152 LRVYAAIKFFLYTFFGSLIMLVGMLFMAYLYYVATGTISFAIPDWHRLILPYDYQIWLFL 211 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF AIK+PMFPFHTWLP AH QAPT GSV LA ++LKMG YG +R LPLFP AS Sbjct: 212 AFFLGLAIKVPMFPFHTWLPYAHGQAPTIGSVILAAVLLKMGTYGFVRLSLPLFPDASIA 271 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 I +++I +IY ++V+ Q D+K++IAYSSI+HMG + +G F+ G+ G++F M Sbjct: 272 LITPIAVIAVIMVIYTAMVAYAQEDMKQVIAYSSISHMGVIILGTFAMNVEGIAGSIFLM 331 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +SHG+VS ALF VG IYDR HT+ + +GGL MP+YA++ + TMA++GLP T GF+ Sbjct: 332 ISHGIVSGALFMLVGNIYDRRHTKKLAEFGGLASVMPKYALIFGIMTMASVGLPLTIGFV 391 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL +M ++ S +A L F ++L A Y L +Y+ FG EK + L DL+ +E Sbjct: 392 GEFLSLMGFYKVSPALAFLGGFSIILGAAYMLRVYKLTFFGPLTNEKNRNLPDLNWKELT 451 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + + V+ ++ G+ P P+ P++ +EN Sbjct: 452 SLVSLVVVVIWLGVNPNPVLK----PINKSVEN 480 >gi|167627165|ref|YP_001677665.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597166|gb|ABZ87164.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 529 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 203/516 (39%), Positives = 310/516 (60%), Gaps = 47/516 (9%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MNL LS++ +LP +G FV+L + + VAL S + + + + FD Sbjct: 1 MNLGNYLLSLIIWLPIVGGFVVLATRTKELHGDAARWVALVFSCLTLALCIPLVASFDYS 60 Query: 59 RSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 S+ Q E W F Y LGVDG S+L +VLT+F T +L++W SI+ R+Y Sbjct: 61 SSAMQFQESAKWFKVFGMHDIYYGLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQY 120 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+ + G F + D +L+Y+F+EA LIP + IG+WGG + YAA K+F+YTFFG Sbjct: 121 MAIFLITCGLTNGVFCATDSILYYVFWEALLIPTCLGIGIWGGKNKAYAAVKYFMYTFFG 180 Query: 175 SIFMLFAIVVM------------------------CWEKKTSSIIDLYAMSKFPFSIQYW 210 S+F+L AI+ + W +++ + D KF + Q+ Sbjct: 181 SVFLLAAILYIQTRVAASPADVLVSADTYSIQNFIAWAAQSNGLAD---SVKFTLTAQWL 237 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ AFF +FA+KIPM+PFH+WLP+AH +AP GSV LA +MLK+G YG +RF +P+ P Sbjct: 238 IFGAFFLAFAVKIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEV 297 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS---------- 320 + V+ +SLIAI+Y +V++ QTD+K+LIAYSSI+HMG VT+G+FS Sbjct: 298 TASLEYVLIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKSADPV 357 Query: 321 ----GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 + ++GA+FQM++H S +F +G +Y R+HTR+I + G+ MP +A+ Sbjct: 358 LGTTNAQLALQGAVFQMIAHAFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFAMFF 417 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 ++F MAN+GLPGTSGF+GEF+++++VFQ S +A++A +V++ +Y+LW+Y++V FG Sbjct: 418 LLFCMANVGLPGTSGFVGEFMILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFFGEV 477 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +V L DL+ E + +AV T+ FG YP PI Sbjct: 478 VSTQVANLTDLNKMELFVFILLAVPTLLFGFYPEPI 513 >gi|332678965|gb|AEE88094.1| NADH-ubiquinone oxidoreductase chain M [Francisella cf. novicida Fx1] Length = 529 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 205/516 (39%), Positives = 309/516 (59%), Gaps = 47/516 (9%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MNL LS++ +LP +G FV+L + + VAL S + + + + FD Sbjct: 1 MNLGNYLLSLIIWLPIVGGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYS 60 Query: 59 RSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 S+ Q E W F Y LGVDG S+L +VLT+F T +L++W SI+ R+Y Sbjct: 61 SSAMQFQESVKWFKVFGMHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQY 120 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+ + G F + D +L+Y+F+EA LIP + IG+WGG + YAA K+F+YTFFG Sbjct: 121 MAIFLITCGLTNGVFCATDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFG 180 Query: 175 SIFMLFAIVVM------------------------CWEKKTSSIIDLYAMSKFPFSIQYW 210 S+F+L AI+ + W ++ ID KF + Q+ Sbjct: 181 SVFLLAAILYIQTRVAASPTHFLVNQDTYSIQNFIAWATQSQGFID---SVKFTLTAQWL 237 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ AFF +FA+KIPM+PFH+WLP+AH +AP GSV LA +MLK+G YG +RF +P+ P Sbjct: 238 VFGAFFLAFAVKIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEV 297 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS---------- 320 + V+ +SLIAI+Y +V++ QTD+K+LIAYSSI+HMG VT+G+FS Sbjct: 298 TASLEYVLIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPV 357 Query: 321 ----GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 + ++GA+FQM++H S +F +G +Y R+HTR+I + G+ MP +A Sbjct: 358 LGTTHAQLALQGAVFQMIAHAFSSGGMFIGIGYLYLRMHTREISDFSGVAKIMPIFATFF 417 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 ++F MAN+GLPGTSGF+GEF+++++VFQ S +A++A +V++ +Y+LW+Y++V FG Sbjct: 418 LLFCMANVGLPGTSGFVGEFMILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFFGEV 477 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +V L DL+ E + +AV T+FFG YP PI Sbjct: 478 VSTQVASLTDLNRMELFVFILLAVPTLFFGFYPEPI 513 >gi|241667727|ref|ZP_04755305.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876271|ref|ZP_05248981.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842292|gb|EET20706.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 529 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 203/516 (39%), Positives = 310/516 (60%), Gaps = 47/516 (9%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MNL LS++ +LP +G FV+L + + VAL S + + + + FD Sbjct: 1 MNLGNYLLSLIIWLPIVGGFVVLATRTKELHGDAARWVALVFSCLTLALCIPLVASFDYS 60 Query: 59 RSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 S+ Q E W F Y LGVDG S+L +VLT+F T +L++W SI+ R+Y Sbjct: 61 SSAMQFQESAKWFKVFGMHDIYYGLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQY 120 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+ + G F + D +L+Y+F+EA LIP + IG+WGG + YAA K+F+YTFFG Sbjct: 121 MAIFLITCGLTNGVFCATDSILYYVFWEALLIPTCLGIGIWGGKNKAYAAVKYFMYTFFG 180 Query: 175 SIFMLFAIVVM------------------------CWEKKTSSIIDLYAMSKFPFSIQYW 210 S+F+L AI+ + W +++ + D KF + Q+ Sbjct: 181 SVFLLAAILYIQTRVAASPADLLVSADTYSIQNFIAWAAQSNGLAD---SVKFTLTAQWL 237 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ AFF +FA+KIPM+PFH+WLP+AH +AP GSV LA +MLK+G YG +RF +P+ P Sbjct: 238 IFGAFFLAFAVKIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEV 297 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS---------- 320 + V+ +SLIAI+Y +V++ QTD+K+LIAYSSI+HMG VT+G+FS Sbjct: 298 TASLEYVLIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKSADPV 357 Query: 321 ----GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 + ++GA+FQM++H S +F +G +Y R+HTR+I + G+ MP +A+ Sbjct: 358 LGTTNAQLALQGAVFQMIAHAFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFAMFF 417 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 ++F MAN+GLPGTSGF+GEF+++++VFQ S +A++A +V++ +Y+LW+Y++V FG Sbjct: 418 LLFCMANVGLPGTSGFVGEFMILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFFGEV 477 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +V L DL+ E + +AV T+ FG YP PI Sbjct: 478 VSTQVANLTDLNKMELFVFILLAVPTLLFGFYPEPI 513 >gi|332184784|gb|AEE27038.1| NADH-ubiquinone oxidoreductase chain M [Francisella cf. novicida 3523] Length = 529 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 204/516 (39%), Positives = 308/516 (59%), Gaps = 47/516 (9%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MNL LS++ +LP +G FV+L + + VAL S + + + + FD Sbjct: 1 MNLGNYLLSLIIWLPIVGGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTAFDYS 60 Query: 59 RSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 S+ Q E W F Y LGVDG S+L +VLT+F T +L++W SI+ R+Y Sbjct: 61 SSAMQFQESVKWFKVFGMHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQY 120 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+ + G F + D +L+Y+F+EA LIP + IG+WGG + YAA K+F+YTFFG Sbjct: 121 MAIFLITCGLTNGVFCATDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFG 180 Query: 175 SIFMLFAIVVM------------------------CWEKKTSSIIDLYAMSKFPFSIQYW 210 S+F+L AI+ + W ++ ID KF + Q+ Sbjct: 181 SVFLLAAILYIQTRVAASPAHFLVNQDTYSIQNFIAWATQSQGFID---SVKFTLTAQWL 237 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ AFF +FA+KIPM+PFH+WLP+AH +AP GSV LA +MLK+G YG +RF +P+ P Sbjct: 238 VFGAFFLAFAVKIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEV 297 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS---------- 320 + V+ +SLIAI+Y +V++ QTD+K+LIAYSSI+HMG VT+G+FS Sbjct: 298 TASLEYVLIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPV 357 Query: 321 ----GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 + ++GA+FQM++H S +F +G +Y R+HTR+I + G+ MP +A Sbjct: 358 LGTTHAQLALQGAVFQMIAHAFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFF 417 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 ++F MAN+GLPGTSGF+GEF+++++VFQ S +A++A +V++ +Y+LW+Y++V FG Sbjct: 418 LLFCMANVGLPGTSGFVGEFMILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFFGEV 477 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +V L DL+ E + +AV T+ FG YP PI Sbjct: 478 VSTQVASLTDLNRMELFVFILLAVPTLLFGFYPEPI 513 >gi|148361090|ref|YP_001252297.1| NADH dehydrogenase I subunit M [Legionella pneumophila str. Corby] gi|148282863|gb|ABQ56951.1| NADH dehydrogenase I, M subunit [Legionella pneumophila str. Corby] Length = 501 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/432 (45%), Positives = 288/432 (66%), Gaps = 13/432 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD Q IE W+ +Y LG+DG+S+LL+VL+ F IL++W SI + + Sbjct: 53 FDLQSFGMQFIEEIPWMPALGINYTLGIDGLSLLLIVLSIFTNLIVILATWDSISKKVSQ 112 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y+ AFL+++ +++G F ++D ++FYIF+EA+LIPM++IIG+WG R+YAA KFFLYTF Sbjct: 113 YLSAFLIMQGLLVGIFSAMDAIVFYIFWEATLIPMYLIIGIWGSDNRVYAAIKFFLYTFL 172 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 GS+ ML + + M + + I YA+ K + Q ++IAFF FAIKIPMFP HTWLP Sbjct: 173 GSVLMLASFLYMGYIAGSFKIETFYAI-KLGMTAQTLIFIAFFLGFAIKIPMFPVHTWLP 231 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH +AP GSV LA I+LK+G YG IRF LP+ P A +AP++ LSLIA++Y L++ Sbjct: 232 DAHTEAPAGGSVVLAAILLKLGAYGFIRFSLPIVPDACSKYAPLMVALSLIAVVYIGLIA 291 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFS--------GMKSG---VEGAMFQMLSHGLVSSA 342 ++Q D+KKLIAYSSI+HMG+VT+G F+ G+ + +EGA+ M+SH VSSA Sbjct: 292 IIQKDMKKLIAYSSISHMGFVTLGCFAIFAIARHGGLSNAGLILEGAIVVMISHAFVSSA 351 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 +F VG IYDR+HTR + +GG+V+ MP +A M+F MAN GLPGTSGF+GEF+VI+ Sbjct: 352 MFAGVGFIYDRMHTRQLADFGGIVNTMPIFASFFMLFAMANAGLPGTSGFVGEFMVILGS 411 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 + V +++ A Y+LW+Y++V+FG +KV LKD+S E +A++ Sbjct: 412 IKAGFWVHFGLQTTLIIGAAYTLWMYKRVIFGPVANKKVAFLKDISGFELSAYVLLAIMV 471 Query: 463 VFFGIYPVPIRD 474 + G+YP P+ + Sbjct: 472 IALGVYPKPMLE 483 >gi|254373570|ref|ZP_04989056.1| conserved hypothetical protein [Francisella tularensis subsp. novicida GA99-3549] gi|151571294|gb|EDN36948.1| conserved hypothetical protein [Francisella novicida GA99-3549] Length = 529 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 204/516 (39%), Positives = 309/516 (59%), Gaps = 47/516 (9%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MNL LS++ +LP +G FV+L + + VAL S + + + + FD Sbjct: 1 MNLGNYLLSLIIWLPIVGGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYS 60 Query: 59 RSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 S+ Q E W F Y LGVDG S+L +VLT+F T +L++W SI+ R+Y Sbjct: 61 SSAMQFQESVKWFKVFGMHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQY 120 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+ + G F + D +L+Y+F+EA LIP + IG+WGG + YAA K+F+YTFFG Sbjct: 121 MAIFLITCGLTNGVFCATDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFG 180 Query: 175 SIFMLFAIVVM------------------------CWEKKTSSIIDLYAMSKFPFSIQYW 210 S+F+L AI+ + W ++ ID KF + Q+ Sbjct: 181 SVFLLAAILYIQTRVAASPTHFLVNQDTYSIQNFIAWATQSQGFID---SVKFTLTAQWL 237 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ AFF +FA+KIPM+PFH+WLP+AH +AP GSV LA +MLK+G YG +RF +P+ P Sbjct: 238 VFGAFFLAFAVKIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEV 297 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS---------- 320 + V+ +SLIAI+Y +V++ QTD+K+LIAYSSI+HMG VT+G+FS Sbjct: 298 TASLEYVLIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPV 357 Query: 321 ----GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 + ++GA+FQM++H S+ +F +G +Y R+HTR+I + G+ MP +A Sbjct: 358 LGTTHAQLALQGAVFQMIAHAFSSAGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFF 417 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 ++F MAN+GLPGTSGF+GEF+++++VFQ S +A++A +V++ +Y+LW+Y++V FG Sbjct: 418 LLFCMANVGLPGTSGFVGEFMILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFFGEV 477 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +V L DL+ E + +AV T+ FG YP PI Sbjct: 478 VSTQVASLTDLNRMELFVFILLAVPTLLFGFYPEPI 513 >gi|171318684|ref|ZP_02907828.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ambifaria MEX-5] gi|171096119|gb|EDT41044.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ambifaria MEX-5] Length = 509 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/489 (39%), Positives = 310/489 (63%), Gaps = 7/489 (1%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + PFLS+ ++P L G ++ S R + ++ + + L + FD + Sbjct: 3 DFPFLSLAIWVPILFGACLLRAGSDRHPHRTRLIALVGALAGLAAVVPLV--TGFDAHSA 60 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q E W+ F + +G+DG S+ LVVLT F T +++SW+S+ +Y +FL Sbjct: 61 AMQFGESRDWLAAFNAGWRVGIDGASLWLVVLTAFTTLIVVIASWESVTVRAAQYYASFL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L +++G F++ D LLF+IFFEA+LIP++++IG WG R+YAA KFF +F GS+ +L Sbjct: 121 ILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGREHRVYAAVKFFFISFAGSLLLL 180 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + K + ++ + M + F+ Q +++ FF +FA+K+PM+P HTWL + + Sbjct: 181 -MAMLYLFAKSHTFDMNAWRMLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDG 239 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT ++ LA MLK+GGYG +RF LP+ P AS +FAP + LSL AI+YASL+++ QTD+ Sbjct: 240 PTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDL 297 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ CV V+ DR R+I Sbjct: 298 GKLLAYSTVAHMGIVTLGLFLFNQIGVEGAIVQLVSYGFVAGAMLLCVSVLVDRTKQREI 357 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGG+ MPR+A ++F MAN+GLPGTSGF+GEF+VIM + + + +A+ ++L Sbjct: 358 GAYGGVAGVMPRFATFALLFAMANVGLPGTSGFVGEFMVIMGAIRVNFWIGAIAALTLIL 417 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+ ++VVFG ++ +L DLS RE M +A++ + G+ P P D Sbjct: 418 SASYTLWMVKRVVFGKIASPRIAKLADLSRREIVMFASLALIVLMVGVDPKPFTDAIDPT 477 Query: 480 LSSIIENYT 488 ++ +I++ + Sbjct: 478 VARLIDDAS 486 >gi|218886699|ref|YP_002436020.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757653|gb|ACL08552.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 519 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/413 (47%), Positives = 275/413 (66%), Gaps = 4/413 (0%) Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + FQ +E W+ + YHL VDGISIL+V LT F P C+L SW I + +E+ I Sbjct: 56 AGFQFVERMTWVARWGLEYHLAVDGISILMVWLTLFTLPLCVLCSWTYIGKRVKEFHICL 115 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L++ S IG F S+D++LFY+F+EA LIPM+++I VWGG+ER YA+ KFFLYT GS + Sbjct: 116 LLMTSACIGVFTSMDLVLFYVFWEAMLIPMYLLIAVWGGAERRYASIKFFLYTLAGSTLL 175 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L AIV T SI DL + F F QYW ++A +FAIK+PMFPFHTWLP AHVQ Sbjct: 176 LVAIVAFRIAGGTFSIPDLMQQT-FGFRFQYWAFLAMALAFAIKVPMFPFHTWLPAAHVQ 234 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP+AGSV LA ++LKMG YG +RF LPL P AS +FAP++ +S+++I+Y V++ QTD Sbjct: 235 APSAGSVILAAVLLKMGTYGFLRFCLPLTPEASVHFAPLMIGVSVVSILYGGAVALGQTD 294 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IKKL+AYSS+AHMG+VT+GIF KSGV+GA+ QML+HG+V+ ALF +G +Y+R H+R+ Sbjct: 295 IKKLVAYSSVAHMGFVTLGIFLFQKSGVQGALLQMLNHGIVTGALFMMIGAMYERSHSRE 354 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + G+ +P + ++ +A+ G PGT+GF+GE LV ++ FQ S TV L G + Sbjct: 355 VADNMGMGKYLPAFMFFWGLYALASFGFPGTNGFVGEVLVFVAAFQQSLTVGALIVPGAL 414 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 L+A Y + ++ +G K DL+ RE + AVL ++ G+ P P Sbjct: 415 LAAAYMFRVSLRMAWGSPSTAKTWN--DLNRREWAYLLLPAVLVLWIGLAPAP 465 >gi|56707223|ref|YP_169119.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110669693|ref|YP_666250.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. tularensis FSC198] gi|118498229|ref|YP_899279.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. novicida U112] gi|194324413|ref|ZP_03058186.1| proton-translocating NADH-quinone oxidoreductase, chain m family [Francisella tularensis subsp. novicida FTE] gi|224456284|ref|ZP_03664757.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254371439|ref|ZP_04987440.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis FSC033] gi|254874061|ref|ZP_05246771.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis MA00-2987] gi|56603715|emb|CAG44676.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320026|emb|CAL08059.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. tularensis FSC198] gi|118424135|gb|ABK90525.1| NADH dehydrogenase I, M subunit [Francisella novicida U112] gi|151569678|gb|EDN35332.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis FSC033] gi|194321478|gb|EDX18963.1| proton-translocating NADH-quinone oxidoreductase, chain m family [Francisella tularensis subsp. novicida FTE] gi|254840060|gb|EET18496.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158331|gb|ADA77722.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. tularensis NE061598] Length = 529 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 204/516 (39%), Positives = 308/516 (59%), Gaps = 47/516 (9%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MNL LS++ +LP +G FV+L + + VAL S + + + + FD Sbjct: 1 MNLGNYLLSLIIWLPIVGGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYS 60 Query: 59 RSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 S+ Q E W F Y LGVDG S+L +VLT+F T +L++W SI+ R+Y Sbjct: 61 SSAMQFQESVKWFKVFGMHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQY 120 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+ + G F + D +L+Y+F+EA LIP + IG+WGG + YAA K+F+YTFFG Sbjct: 121 MAIFLITCGLTNGVFCATDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFG 180 Query: 175 SIFMLFAIVVM------------------------CWEKKTSSIIDLYAMSKFPFSIQYW 210 S+F+L AI+ + W ++ ID KF + Q+ Sbjct: 181 SVFLLAAILYIQTRVAASPTHFLVNQDTYSIQNFIAWATQSQGFID---SVKFTLTAQWL 237 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ AFF +FA+KIPM+PFH+WLP+AH +AP GSV LA +MLK+G YG +RF +P+ P Sbjct: 238 VFGAFFLAFAVKIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEV 297 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS---------- 320 + V+ +SLIAI+Y +V++ QTD+K+LIAYSSI+HMG VT+G+FS Sbjct: 298 TASLEYVLIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPV 357 Query: 321 ----GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 + ++GA+FQM++H S +F +G +Y R+HTR+I + G+ MP +A Sbjct: 358 LGTTHAQLALQGAVFQMIAHAFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFF 417 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 ++F MAN+GLPGTSGF+GEF+++++VFQ S +A++A +V++ +Y+LW+Y++V FG Sbjct: 418 LLFCMANVGLPGTSGFVGEFMILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFFGEV 477 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +V L DL+ E + +AV T+ FG YP PI Sbjct: 478 VSTQVASLTDLNRMELFVFILLAVPTLLFGFYPEPI 513 >gi|164420977|ref|YP_001648599.1| NADH dehydrogenase subunit 4 [Xestospongia muta] gi|158938982|gb|ABW83906.1| NADH dehydrogenase subunit 4 [Xestospongia muta] Length = 484 Score = 369 bits (946), Expect = e-99, Method: Compositional matrix adjust. Identities = 204/432 (47%), Positives = 285/432 (65%), Gaps = 8/432 (1%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWID----YFCSYHLGVDGISILLVVLTTFLTPFCILSS 103 ++ +W+ FD G FQ I WI F S VDGISI +LT LTP CIL S Sbjct: 42 TILLWASFD-GDGQFQAIRKIEWIPGVEPVFGSVVFAVDGISIFFXILTALLTPICILIS 100 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIY 162 W +I+ +E+++ L++E +++G F LD++ FYI FE LIPMF+IIG+WG E++ Sbjct: 101 WNAIRFLIKEFLLCLLLIEILLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSREEKVQ 160 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A+Y FF YTF GS+FML AI + + T+ L + +F +Q ++++ FF S AIK Sbjct: 161 ASYYFFFYTFLGSVFMLLAIFTLYSQAGTTDYQFLCCL-RFERGLQCFIFLGFFLSLAIK 219 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 IP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PL P AS+YFAP+I LS Sbjct: 220 IPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPDASEYFAPLIQTLS 279 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 L+AIIY SL + Q D+K++IAYSS+AHMG VT+GIFS G+ A+F ML+HGLVSSA Sbjct: 280 LLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTVQGLVAAIFLMLAHGLVSSA 339 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF V +Y+R HTR + Y G+V MP + ++M++ +AN +P + FIGEF+ +++ Sbjct: 340 LFIAVTFLYERHHTRLVKYYRGMVITMPLFGILMLLLVLANASIPLSCNFIGEFISLLAA 399 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 F+ S V +LAS G+VLSA YS++LY +V FG + + +DL+ RE ++P+ +L Sbjct: 400 FEYSYVVGILASLGMVLSAGYSIYLYNRVCFG-APSRYLHLSRDLNRREFYTLFPLVILI 458 Query: 463 VFFGIYPVPIRD 474 GI+P I D Sbjct: 459 FLMGIFPFIIID 470 >gi|187931000|ref|YP_001890984.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187711909|gb|ACD30206.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 529 Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 204/516 (39%), Positives = 307/516 (59%), Gaps = 47/516 (9%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MNL LS++ +LP +G FV+L + + VAL S + + + + FD Sbjct: 1 MNLGNYLLSLIIWLPIVGGFVVLATRTKELHGDAARWVALVFSCLTLALCVPLVTSFDYS 60 Query: 59 RSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 S+ Q E W F Y LGVDG S+L +VLT+F T +L++W SI+ R+Y Sbjct: 61 SSAMQFQESVKWFKVFGMHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQY 120 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+ + G F + D +L+Y+F+EA LIP + IG+WGG + YAA K+F+YTFFG Sbjct: 121 MAIFLITCGLTNGVFCATDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFG 180 Query: 175 SIFMLFAIVVM------------------------CWEKKTSSIIDLYAMSKFPFSIQYW 210 S+F+L AI+ + W ++ ID KF + Q+ Sbjct: 181 SVFLLAAILYIQTRVAASPTHFLVNQDTYSIQNFIAWATQSQGFID---SVKFTLTAQWL 237 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ AFF +FA+KIPM+PFH+WLP+AH +AP GSV LA +MLK+G YG +RF +P+ P Sbjct: 238 VFGAFFLAFAVKIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEV 297 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS---------- 320 + V+ +SLIAI+Y +V++ QTD+K+LIAYSSI+HMG VT+G+FS Sbjct: 298 TASLEYVLIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPV 357 Query: 321 ----GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 + ++GA+FQM++H S +F +G +Y R+HTR+I + G+ MP +A Sbjct: 358 LGTTHAQLALQGAVFQMIAHAFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFF 417 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 ++F MAN+GLPGTSGF+GEF+++ +VFQ S +A++A +V++ +Y+LW+Y++V FG Sbjct: 418 LLFCMANVGLPGTSGFVGEFMILQAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFFGEV 477 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +V L DL+ E + +AV T+ FG YP PI Sbjct: 478 VSTQVASLTDLNRMELFVFILLAVPTLLFGFYPEPI 513 >gi|167589182|ref|ZP_02381570.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ubonensis Bu] Length = 509 Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 182/433 (42%), Positives = 289/433 (66%), Gaps = 4/433 (0%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD ++ Q +E+ W+ F + LG+DG S+ LVVLT F T I++SW+S+ + Sbjct: 55 FDTHSAAMQFVEHRDWLAAFGAGWRLGIDGASLWLVVLTAFTTLVIIVASWESVTVRVAQ 114 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y+ +FL+L +++G F + D LLF+IFFEA+LIP++++IG WG R++AA KFF +F Sbjct: 115 YLASFLILSGLMVGVFAAQDGLLFFIFFEATLIPLYLLIGTWGRENRVHAAVKFFFISFA 174 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 GS+ +L A++ + + T + ++ + F+ Q +++ FF +FA+K+PM+P HTWL Sbjct: 175 GSLLLLMAMLYLYAKSHTFDM-SVWRTLQLGFAPQLLVFVGFFAAFAVKVPMWPVHTWLR 233 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 + + PT ++ L MLK+GGYG +RF LP+ P AS +FAP + LSL AIIYASL++ Sbjct: 234 DVYSDGPTGAALMLG--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIIYASLLA 291 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTD+ KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ CV V+ DR Sbjct: 292 LAQTDLGKLLAYSTVAHMGLVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVSVLSDR 351 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 +TR I YGG+ + MPR+A ++F+MAN+GLPGTSGF+GEF++IM + + + LA Sbjct: 352 TNTRAIAEYGGVANAMPRFATFALLFSMANVGLPGTSGFVGEFMIIMGAIRFNFWIGALA 411 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 + ++LSA Y+LW+ ++VVFG ++ QL DL+ RE + +A++ + G+ P P Sbjct: 412 ALTLILSASYTLWMLKRVVFGKVASPRIAQLVDLNRREIAVFASLALIVLMVGVDPKPFT 471 Query: 474 DTFSVPLSSIIEN 486 D ++ +I+ Sbjct: 472 DAIDPTVARLIDE 484 >gi|158335283|ref|YP_001516455.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain M [Acaryochloris marina MBIC11017] gi|158305524|gb|ABW27141.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain M [Acaryochloris marina MBIC11017] Length = 490 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 198/467 (42%), Positives = 299/467 (64%), Gaps = 8/467 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ F P +G +IL + +A + F+ F+ FD ++ FQ++ Sbjct: 6 LSLIIFSPLVGAVIILLLPKAQESLYKWISLANMVVVSALTFAAFLQ--FDPNQTGFQLV 63 Query: 66 EYYHWIDYFCSYHL-GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E WI Y+L G DGIS +VVLT ++ + S+ SI++ +EY +L L + Sbjct: 64 EKTLWIPQLNVYYLLGTDGISFPMVVLTALISTLASIGSF-SIKKREKEYYCLYLFLVTG 122 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G FL+LDM+LFY+F+E L+PM+ +IG+WGG + YAA KFFLYTF GS+ ML I+ Sbjct: 123 MMGTFLALDMILFYVFWEVVLVPMYFLIGIWGGPRKEYAAMKFFLYTFAGSLLMLVGILG 182 Query: 185 MCWEK--KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 M + T +I++L A F F Q +++A F FA+K+P FPFHTWLP+AHV+APT Sbjct: 183 MYFNSAPHTFNIMELVA-QDFSFGFQKIVFLALFVGFAVKVPTFPFHTWLPDAHVEAPTP 241 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 SV LAG++LKMG YG RF P+ P A+ +F P + L+ I I+Y +++ QTD KK+ Sbjct: 242 ISVILAGVLLKMGTYGFFRFSFPILPEAANWFRPYLAVLAAIGIVYGGFIALAQTDFKKM 301 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 +AYSSI+HMG+V +G+ + +G GAM QM SHG+++ ALF VGVIYDR HTRD+ A+ Sbjct: 302 VAYSSISHMGFVLLGLAAFSTNGFNGAMLQMFSHGVITGALFLLVGVIYDRAHTRDMNAF 361 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGL +P Y+ ++ F++A++GLPG SGF+ EFLV++ ++ S A G++L+A Sbjct: 362 GGLNAQLPVYSGFLVFFSLASLGLPGLSGFVSEFLVLLGSYEYSKLYTAFACMGILLAAC 421 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Y L++ R+V+ G + K + L D+++RE V P+ ++T+ GIYP Sbjct: 422 YLLFMVRRVLLGPAN-PKWESLPDINMREVVTVVPLLIITLGIGIYP 467 >gi|317134162|ref|YP_004123415.1| NADH dehydrogenase subunit 4 [Corticium candelabrum] gi|308912771|gb|ADO51526.1| NADH dehydrogenase subunit 4 [Corticium candelabrum] Length = 488 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 212/452 (46%), Positives = 292/452 (64%), Gaps = 17/452 (3%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHW--------IDYFCSYHLGVDGISILLVVLTTFLTPFC 99 ++ +W FD G FQ ++ W I + VDGIS+ ++LT L P C Sbjct: 42 TIVLWVTFD-GEGQFQALKIIEWTRPTMEGGIWSSGTVVFAVDGISVXFLILTAILIPIC 100 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-S 158 IL SW +I +E+++ LVLE +++G FL LD+LLFYI FE LIPMF+IIGVWG Sbjct: 101 ILISWNTINFFXKEFLLCLLVLEILLMGVFLILDLLLFYILFEGILIPMFLIIGVWGSRE 160 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS 218 E++ A+Y FF YT GS+ ML I V+ T+ L + K +Q W+++ FF S Sbjct: 161 EKVLASYXFFFYTLIGSVLMLLGIFVIYSNTGTTDYQTLCGL-KLDGEVQKWVFMGFFVS 219 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 AIKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PL P AS+YFAP++ Sbjct: 220 LAIKIPKIPFHIWLPLAHVEAPVAGSVMLAGVLLKLGGYGFIRFSWPLLPEASEYFAPLV 279 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL+AI+YASL + Q D+K++IAYSS+AHMG VT+GIF+ G+ A+F ML+HGL Sbjct: 280 QTLSLLAIVYASLTACRQADLKRIIAYSSVAHMGLVTLGIFTHTIQGLVSAIFLMLAHGL 339 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 VSSALF V ++Y+R HTR + Y G+ MP ++++M++ T+ANM +P + F+GEFL Sbjct: 340 VSSALFIIVTLLYERHHTRLVKYYRGVAITMPIFSIIMLLMTLANMSVPLSCNFVGEFLS 399 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 +++VF+ S VLAS G+VL A YSL+LY +V FG + + +DL+ RE ++P+ Sbjct: 400 LLAVFEYSLVGGVLASLGMVLGAAYSLYLYNRVCFG-NTSNFILFSRDLNRREFYALFPL 458 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSII--ENYT 488 L G+YP I DT SSII E+YT Sbjct: 459 VFLVYLIGVYPFVIIDTVK---SSIIFQESYT 487 >gi|172061023|ref|YP_001808675.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ambifaria MC40-6] gi|171993540|gb|ACB64459.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ambifaria MC40-6] Length = 509 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 191/489 (39%), Positives = 309/489 (63%), Gaps = 7/489 (1%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + PFLS+ ++P L G ++ S R + ++ + + L + FD + Sbjct: 3 DFPFLSLAIWVPILFGACLLRAGSDHHSHRTRLIALVGALAGLAAVVPLV--TGFDSHSA 60 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q E W+ F + +G+DG S+ LVVLT F T +++SW+S+ +Y +FL Sbjct: 61 AMQFAETRDWLAAFNAGWRVGIDGASLWLVVLTAFTTLVVVIASWESVTVRVAQYYASFL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L +++G F++ D LLF+IFFEA+LIP++++IG WG R+YAA KFF +F GS+ +L Sbjct: 121 ILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGREHRVYAAVKFFFISFAGSLLLL 180 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + K + ++ + + F+ Q +++ FF +FA+K+PM+P HTWL + + Sbjct: 181 -MAMLYLFAKSHTFDMNAWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDG 239 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT ++ LA MLK+GGYG +RF LP+ P AS +FAP + LSL AI+YASL+++ QTD+ Sbjct: 240 PTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDL 297 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ CV V+ DR R+I Sbjct: 298 GKLLAYSTVAHMGIVTLGLFLFNQIGVEGAIVQLVSYGFVAGAMLLCVSVLVDRTKQREI 357 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGG+ MPR+A ++F MAN+GLPGTSGF+GEF+VIM + + + +A+ ++L Sbjct: 358 DAYGGVAGVMPRFATFALLFAMANVGLPGTSGFVGEFMVIMGAIRVNFWIGAIAALTLIL 417 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+ ++VVFG ++ +L DLS RE M +A++ + G+ P P D Sbjct: 418 SASYTLWMVKRVVFGKIASPRIAKLADLSRREIVMFASLALIVLMVGVDPKPFTDAIDPT 477 Query: 480 LSSIIENYT 488 ++ +I++ + Sbjct: 478 VARLIDDAS 486 >gi|254456963|ref|ZP_05070391.1| donor-ubiquinone reductase I [Campylobacterales bacterium GD 1] gi|207085755|gb|EDZ63039.1| donor-ubiquinone reductase I [Campylobacterales bacterium GD 1] Length = 517 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 203/488 (41%), Positives = 305/488 (62%), Gaps = 17/488 (3%) Query: 6 LSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LSI+ F P + G+F + S + ++ I F SL +W FD S Q Sbjct: 6 LSILIFFPAVAGIF------GFAVQKDSIRAYGVSVAFIEFALSLMLWFSFDSNVSGMQF 59 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 IE I F +Y LGVDGIS+ +++L F T I S + ++ + +I L L+ Sbjct: 60 IETLPLIPSFGINYILGVDGISLFIIILAAFFTLIGIASLTDT--KDVKNMIITLLFLQM 117 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++G F++LD ++FY+F+E SL+PM IIG WGG RIYA+ KFFLYTF GS+ ML ++ Sbjct: 118 TMVGVFVALDAIVFYVFWELSLVPMLYIIGAWGGPLRIYASVKFFLYTFTGSLVMLVGML 177 Query: 184 VMCW--EKKTSS----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 M + + T + I+D Y + P + Q W+++AFF FAIK+PMFPFHTWLP AH Sbjct: 178 FMAYFYYQATGTWSFAILDWYRL-ILPETFQLWLFVAFFFGFAIKVPMFPFHTWLPYAHG 236 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 QAPT GSV LA I+LKMG Y IRF LP+FP A+ +F I L++I I+Y ++V+ Q Sbjct: 237 QAPTIGSVILAAILLKMGTYAFIRFSLPMFPDAAVFFMFPIAVLAIIMIVYTAMVAYAQE 296 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K+++AYSS++HMG + +G F+ G+ G++F M++HG+VS ALF VGVIYDR HT+ Sbjct: 297 DVKQVVAYSSVSHMGVIILGTFALNVEGITGSIFLMIAHGVVSGALFLLVGVIYDRRHTK 356 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 + +GGL MPR+A + + MA++GLP T F+GEFL ++ +Q S+ + +LA + Sbjct: 357 MMSEFGGLASVMPRFATIFGIMMMASVGLPLTINFVGEFLSLLGFYQQSHILTLLAGLAI 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 ++ A+Y L Y+K+ FG EK + L D++ RE + P+ ++TV+ GIYP P+ + Sbjct: 417 IVGAIYMLAAYKKMFFGEVTNEKNRNLPDVNKRELIALVPLVIITVWLGIYPKPLLGPIN 476 Query: 478 VPLSSIIE 485 + S+++ Sbjct: 477 NSVESVVQ 484 >gi|170701545|ref|ZP_02892495.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ambifaria IOP40-10] gi|170133539|gb|EDT01917.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia ambifaria IOP40-10] Length = 509 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 191/489 (39%), Positives = 309/489 (63%), Gaps = 7/489 (1%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + PFLS+ ++P L G ++ S R + ++ + + L + FD + Sbjct: 3 DFPFLSLAIWVPILFGACLLRAGSDRHPHRTRLIALVGALAGLAAVVPLV--TGFDSHSA 60 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q E W+ F + +G+DG S+ LVVLT F T +++SW+S+ +Y +FL Sbjct: 61 AMQFAETRDWLAAFNAGWRVGIDGASLWLVVLTAFTTLVVVIASWESVTVRVAQYYASFL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L +++G F++ D LLF+IFFEA+LIP++++IG WG R+YAA KFF +F GS+ +L Sbjct: 121 ILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGREHRVYAAVKFFFISFAGSLLLL 180 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + K + ++ + + F+ Q +++ FF +FA+K+PM+P HTWL + + Sbjct: 181 -MAMLYLFAKSHTFDMNAWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYTDG 239 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT ++ LA MLK+GGYG +RF LP+ P AS +FAP + LSL AI+YASL+++ QTD+ Sbjct: 240 PTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIALAQTDL 297 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ CV V+ DR R+I Sbjct: 298 GKLLAYSTVAHMGIVTLGLFLFNQIGVEGAIVQLVSYGFVAGAMLLCVSVLVDRTKQREI 357 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 AYGG+ MPR+A ++F MAN+GLPGTSGF+GEF+VIM + + + +A+ ++L Sbjct: 358 DAYGGVAGVMPRFATFALLFAMANVGLPGTSGFVGEFMVIMGAIRVNFWIGAIAALTLIL 417 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+ ++VVFG ++ +L DLS RE M +A++ + G+ P P D Sbjct: 418 SASYTLWMVKRVVFGKIASPRIAKLADLSRREIVMFASLALIVLMVGVDPKPFTDAIDPT 477 Query: 480 LSSIIENYT 488 ++ +I++ + Sbjct: 478 VARLIDDAS 486 >gi|224365682|ref|YP_002608409.1| NADH dehydrogenase subunit 4 [Vitis vinifera] gi|209954206|emb|CAQ77679.1| NADH dehydrogenase subunit 4 [Vitis vinifera] gi|239764710|gb|ACS15181.1| NADH dehydrogenase subunit 4 [Vitis vinifera] Length = 495 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 202/453 (44%), Positives = 279/453 (61%), Gaps = 3/453 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTF 94 + L S I F++ FD ++ Q +E W+ Y + +LG+DGIS+ V+LTTF Sbjct: 40 IGLCASLITFLYPPVPRIQFDPSTATSQFVESLRWLPYENINLYLGIDGISLFFVILTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CI W ++ +EY+ A L+ E ++I F LD LLFY+ E+ IPMF+IIGV Sbjct: 100 LIPICISVGWSGMRSYGKEYITASLIREFLMIAVFRMLDPLLFYVLPESVPIPMFIIIGV 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG +R I AAY+FFLYT GS+FML AI+++ + T+ + ++F Q ++WI Sbjct: 160 WGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDS-QISLTTEFSERRQIFLWI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 A F SFA+K+PM P H WLP AHV+APTAGSV LAGI LK+G +G +RF +P+FP A+ Sbjct: 219 ASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLKLGTHGFLRFSIPMFPEATLR 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 P I+ S IAIIY S + Q D+KK+IAYS +AHM VTIG+FS G+ G++ M Sbjct: 279 STPFIYTPSAIAIIYTSSTTSRQIDLKKIIAYSPVAHMNLVTIGMFSPNIQGIGGSILPM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 SHG V SALF CVGV+YDR TR YGG V MP + T+ANM PGTS FI Sbjct: 339 SSHGPVPSALFLCVGVLYDRHKTRLARYYGGSVSTMPNLPTISFSSTLANMSSPGTSSFI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEF + + FQ ++ VA LA+ G++L A YSLWLY + V G K + + + D + RE Sbjct: 399 GEFPISVGAFQRNSLVATLAALGMILGAAYSLWLYNRAVSGNLKPDFLHKFSDPNGREVS 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + P V V G++P D +S+++++ Sbjct: 459 IFIPFLVGVVRMGVHPKVFPDRMHTSVSNLVQH 491 >gi|190571388|ref|YP_001975746.1| NADH dehydrogenase I, M subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357660|emb|CAQ55104.1| NADH dehydrogenase I, M subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 480 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 206/454 (45%), Positives = 298/454 (65%), Gaps = 8/454 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL + + F+ S+ FD + FQ + Y + +G+DGIS+L ++LTTFL Sbjct: 32 LALFFAILPFLLSIVACIEFDYNNADFQFVSYP-----IKNVGIGIDGISLLFLLLTTFL 86 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 CIL + K + YM FL+LES V+G F+SL+ + FY+FFEA LIPMF IIG+W Sbjct: 87 FVICILYNCKMSYTTLKAYMALFLLLESFVVGFFVSLNAISFYVFFEAVLIPMFFIIGIW 146 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM-SKFPFSIQYWMWIA 214 GG +RIYA +K FLYT GS+ L +V + T +I L + +Q +WI Sbjct: 147 GGKQRIYATFKLFLYTLTGSLLFLLGLVYIYSTFGTFNIQKLATLVPSLDLEVQSLLWIT 206 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF SFAIK+PMFPFHTWLP+AHVQ+PT+GSV LAG+++KMGGYG +RF +P+ P AS YF Sbjct: 207 FFISFAIKVPMFPFHTWLPDAHVQSPTSGSVILAGLLIKMGGYGFLRFSIPMLPQASLYF 266 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 + + LS+IA+IYASLV+ Q DIKKLIAYSSIAHMG VT G+FS + GV G++FQM+ Sbjct: 267 SNFVVVLSIIAVIYASLVAFAQDDIKKLIAYSSIAHMGIVTAGLFSFCEEGVLGSIFQMI 326 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGL+S+ALF CVG++Y R T +I Y G+V+ MP++ + ++F+MA++GLPGTSGF G Sbjct: 327 SHGLISAALFLCVGMLYTRTGTLEIAKYFGIVNTMPKFGFMFILFSMASIGLPGTSGFAG 386 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFL ++ +F++ + G +LSA+Y L L +++++GVS + + D S+ + Sbjct: 387 EFLAMVGMFKSIGFFTGFIALGTILSAVYMLNLCKQIIWGVSYSKLLNNRLD-SIEFSVL 445 Query: 455 VYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 + +AV + G YP + +++++ Y Sbjct: 446 IL-LAVFVILLGFYPTLALNYLKPCMANLLVKYN 478 >gi|254252013|ref|ZP_04945331.1| NADH dehydrogenase subunit 4 [Burkholderia dolosa AUO158] gi|124894622|gb|EAY68502.1| NADH dehydrogenase subunit 4 [Burkholderia dolosa AUO158] Length = 506 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 197/503 (39%), Positives = 314/503 (62%), Gaps = 14/503 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRS----FFGVALGISTINFIFSLFVWSVFDK 57 + P LS+ + P L +L + RR+ G +G++T+ + + FD Sbjct: 3 DFPLLSLAIWAPILFGTCLLRAGSDRHARRTRVVALVGALVGLATVVPLVA-----GFDP 57 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++ Q +E W+ F + +G+DG SI LV LT F T +L+SW SI +Y Sbjct: 58 HSAAMQFVERRDWLAAFDAGWRVGIDGASIWLVALTAFTTVVVVLASWTSITVRVAQYYA 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 +FL+L +++G F++ D LLF++FFEA+LIP++++IG WG R++AA KFF +F GS+ Sbjct: 118 SFLILSGLMVGVFVAQDGLLFFVFFEATLIPLYLLIGTWGREHRVHAAVKFFFVSFAGSL 177 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 +L A++ + + T + + +F F+ Q +++ FF +FA+K+PM+P HTWL + + Sbjct: 178 LLLAAMLYLYAKSHTFDM-SAWRTLQFGFAPQLLVFVGFFAAFAVKVPMWPVHTWLRDVY 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 PT ++ LA MLK+GGYG +RF LP+ P AS +FAP + LSL AI+YASL+++ Q Sbjct: 237 TDGPTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIALAQ 294 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+ KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ CV V+ +R Sbjct: 295 TDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVSVLVERTKE 354 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R+I AYGG+ MPR+A ++F MAN+GLPGTSGF+GEF+VIM + + + +A+ Sbjct: 355 REIAAYGGVAGVMPRFATFALLFAMANVGLPGTSGFVGEFMVIMGAIRFNFWIGAIAALT 414 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++LSA Y+LW+ ++VVFG ++ +L DL+ RE M +A++ + GI P P D Sbjct: 415 LILSAAYTLWMLKRVVFGKVANARIAKLVDLNRREIAMFASLALIVLAVGIDPKPFTDAI 474 Query: 477 SVPLSSIIENYTL-KTGYSDSVK 498 + +I++ + K +DSV Sbjct: 475 DPTVGRLIDDASHSKLPPADSVS 497 >gi|11467595|ref|NP_043741.1| NADH dehydrogenase, subunit 4 [Allomyces macrogynus] gi|1236425|gb|AAC49242.1| NADH dehydrogenase, subunit 4 [Allomyces macrogynus] Length = 482 Score = 367 bits (942), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 205/473 (43%), Positives = 298/473 (63%), Gaps = 15/473 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCG---RRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LS + LP +G +I YLG + +AL I+ INFI S+ +W FD+ + F Sbjct: 2 LSTLIILPLVGALII----YLGESSFTNETRLRIALIIAGINFIISIGLWIQFDENTAQF 57 Query: 63 QMIEYYHWI--DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E + + C +GVDGIS+ V+LT+FLT IL+ + E+ Y+I L+ Sbjct: 58 QFVEDFGSLFGQGLCHLIIGVDGISLFFVILTSFLTIPIILTPPYN-GESPTAYLITLLI 116 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFML 179 LESM+I F+ LD+LLFYI FE LIPMF+IIG+WG R I AAY FFLYT GS+FML Sbjct: 117 LESMLIAVFVVLDLLLFYICFETVLIPMFLIIGIWGSKVRKIMAAYHFFLYTLLGSLFML 176 Query: 180 FAIVVMCWEKKTSS---IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 I+V+ ++ T+ ++ + ++ + + +W+ FF SFA+K+PMFP + WLP AH Sbjct: 177 LGIIVIYYQTGTTDYQYLLAVLGTAESSLTRENLLWLTFFLSFAVKVPMFPVYGWLPLAH 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +APT GS+ LAGI+LK+ GYG +R+ +PLFP AS YF P + L++I I+Y+ Q Sbjct: 237 SEAPTGGSMILAGILLKLSGYGFLRYSIPLFPNASNYFTPFVLTLAVIGILYSIFACFRQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K +IAYSSI+HM V IFS G+EGA+F M+SHG+VSSALFFCVG +YDR T Sbjct: 297 TDLKSVIAYSSISHMNIVIAAIFSDNIIGIEGALFMMISHGIVSSALFFCVGALYDRTGT 356 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R + Y GL MP +++ + + NM +PG GFIGEFL + +F+ + + +LAS Sbjct: 357 RILAYYRGLTMVMPLFSLCFFILILNNMAVPGGIGFIGEFLCFLGIFKTNPIICLLASLS 416 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +VL A Y+++L +++FG S + + DL+ RE ++ P L++ G+ P Sbjct: 417 IVLGAAYNIFLTNRLLFG-SLSKYFKSYNDLTRREFMILLPFVFLSILLGLCP 468 >gi|58696966|ref|ZP_00372454.1| NADH dehydrogenase I, M subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225630635|ref|YP_002727426.1| NADH dehydrogenase I, M subunit [Wolbachia sp. wRi] gi|58536794|gb|EAL60028.1| NADH dehydrogenase I, M subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225592616|gb|ACN95635.1| NADH dehydrogenase I, M subunit [Wolbachia sp. wRi] Length = 480 Score = 367 bits (942), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 206/454 (45%), Positives = 298/454 (65%), Gaps = 8/454 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL + + F+ S+ FD + FQ + Y + +G+DGIS+L ++LTTFL Sbjct: 32 LALFFAVLPFLLSIVACIEFDYNDADFQFVSYP-----IRNVGIGIDGISLLFLLLTTFL 86 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 CIL + K R YM FL+LES V+G F+SL+ + FY+FFEA LIPMF IIG+W Sbjct: 87 FVICILYNCKMSYTTLRPYMALFLLLESFVVGFFVSLNAISFYVFFEAVLIPMFFIIGIW 146 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM-SKFPFSIQYWMWIA 214 GG R+YA +K FLYT GS+ L +V + T +I L + +Q +WIA Sbjct: 147 GGKHRVYATFKLFLYTLTGSLLFLLGLVYIYSTFGTFNIQKLATLVPNLDLEVQSLLWIA 206 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF SFAIK+PMFPFHTWLP+AHVQ+PT+GSV LAG+++KMGGYG +RF +P+ P AS YF Sbjct: 207 FFISFAIKVPMFPFHTWLPDAHVQSPTSGSVILAGLLIKMGGYGFLRFSIPMLPQASLYF 266 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 + + LS+IA+IYASLV+ Q DIKKLIAYSSIAHMG VT G+FS + GV G++FQM+ Sbjct: 267 SNFVVVLSIIAVIYASLVAFAQDDIKKLIAYSSIAHMGIVTAGLFSFCEEGVLGSIFQMI 326 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGL+S+ALF CVG++Y R T +I Y G+V+ MP++ + ++F++A++GLPGTSGF G Sbjct: 327 SHGLISAALFLCVGMLYTRTGTLEIAKYFGIVNTMPKFGFMFILFSIASIGLPGTSGFAG 386 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFL ++ +F++ + G +LSA+Y L L +++++GVS + + D S+ + Sbjct: 387 EFLAMVGMFKSLGFFTGFIALGTILSAVYMLNLCKQIIWGVSYSKLLNNRLD-SIEFSVL 445 Query: 455 VYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 + +AV + G YP + +++++ Y Sbjct: 446 IL-LAVFVILLGFYPTLALNYLKPCMANLLVKYN 478 >gi|134296077|ref|YP_001119812.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia vietnamiensis G4] gi|134139234|gb|ABO54977.1| NADH dehydrogenase subunit M [Burkholderia vietnamiensis G4] Length = 509 Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 181/435 (41%), Positives = 286/435 (65%), Gaps = 4/435 (0%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD ++ Q E W+ F + +G+DG S+ LVVLT F T +++SW+S+ + Sbjct: 55 FDAHSAAMQFTESRDWLAAFHAGWRVGIDGASLWLVVLTAFTTLVVVIASWESVTVRVAQ 114 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y +FL+L +++G F++ D LLF+IFFEA+LIP++++IG WG R+YAA KFF +F Sbjct: 115 YYASFLILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGSERRVYAAVKFFFMSFA 174 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 GS+ +L A++ + + T + + + + F+ Q +++ FF +FA+K+PM+P HTWL Sbjct: 175 GSLLLLMAMLYLSAKSHTFDM-NAWRTLQLGFTPQLLVFLGFFAAFAVKVPMWPVHTWLS 233 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 + + PT ++ LA MLK+GGYG +RF LP+ P AS +FAP + LSL AI+YASL++ Sbjct: 234 DVYKDGPTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLIA 291 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTD+ KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ CV V+ DR Sbjct: 292 LAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVSVLVDR 351 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 R+I AYGG+ MPR+A M+F MAN+GLPGTSGF+GEF+VIM + + + +A Sbjct: 352 TKQREIAAYGGVAGVMPRFATFSMLFAMANIGLPGTSGFVGEFMVIMGAIRMNFWIGAIA 411 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 + ++LSA Y+LW+ ++V+FG ++ +L DL RE + +A++ + G+ P P Sbjct: 412 ALTLILSASYTLWMVKRVIFGKVASPRIAKLADLGRREVVLFASLALIVLMVGVDPKPFT 471 Query: 474 DTFSVPLSSIIENYT 488 D + +IE+ + Sbjct: 472 DAIDPTVGRLIEDAS 486 >gi|183220696|ref|YP_001838692.1| NADH-quinone oxidoreductase subunit M [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910797|ref|YP_001962352.1| NADH dehydrogenase subunit M [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775473|gb|ABZ93774.1| NADH dehydrogenase (ubiquinone), M chain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779118|gb|ABZ97416.1| NADH-quinone oxidoreductase, chain M [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 579 Score = 367 bits (941), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 199/475 (41%), Positives = 312/475 (65%), Gaps = 16/475 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LSI+ FLP + F+I+ +G + ++ S I SL ++ +D ++ Q Sbjct: 6 LSIIIFLPIVSTFLIVIQKRVG----AVVVISALSSAFTTILSLGLFFFYDASKAGLQ-- 59 Query: 66 EYYHWI-DYFCS------YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + HWI D+ S YH+G+DG+S+LL LTTF+ ++SW +I + +E+ I Sbjct: 60 -FVHWIPDWILSGKLSVDYHVGLDGVSLLLFALTTFMFFLSSIASWSNIPKKIKEFHICL 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LVLE+ V+G F S +++LFY+F+E ++PM ++IG+WGG ER AA K+FL++ GS+FM Sbjct: 119 LVLETAVLGVFASGNLVLFYVFWELMVLPMVLMIGIWGGEERTKAALKYFLFSMAGSLFM 178 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L I+ + ++ +SI L S +S +Q++++ +FF +FAIKIP+FPFHTW+P+ H Sbjct: 179 LGGILTLYFKTGKTSIESLSTASLALYSEPLQWFLFFSFFLAFAIKIPLFPFHTWMPDVH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 QAPT GSV LAG++LK+G YG IRF +P FP S I L++I I+Y S+ ++VQ Sbjct: 239 TQAPTVGSVDLAGVLLKIGAYGFIRFCIPFFPEQSLLSQNGIQILAVIGIVYGSMAALVQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TDIK++IAYSS++H+G+ +GIFS GV G M QM+SHG+ + +F +G+IY+R HT Sbjct: 299 TDIKRIIAYSSLSHLGFCILGIFSFTTEGVVGGMLQMVSHGISTGMIFLMIGMIYERAHT 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R+I +GGL MP ++ ++ ++++GLPGT+GF+GEFL+++ +++ + +A+ G Sbjct: 359 RNISEFGGLAGQMPVFSTFFLIAVLSSIGLPGTNGFVGEFLILIGAIKSNVWLGGIAATG 418 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 VVL ALY LW ++ +FGVSK + + KDLS RE ++ P+ VL + G+YP P Sbjct: 419 VVLGALYLLWFVKRFLFGVSKTIQAKPYKDLSFREIGILSPLVVLIFWIGLYPKP 473 >gi|42520781|ref|NP_966696.1| NADH dehydrogenase I, M subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410521|gb|AAS14630.1| NADH dehydrogenase I, M subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 480 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 206/454 (45%), Positives = 297/454 (65%), Gaps = 8/454 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL + + F+ S+ FD + FQ + Y + +G+DGIS+L ++LTTFL Sbjct: 32 LALFFAVLPFLLSIVACIEFDYNNADFQFVSYP-----IRNVGIGIDGISLLFLLLTTFL 86 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 CIL + K + YM FL+LES V+G F+SL+ + FY+FFEA LIPMF IIG+W Sbjct: 87 FVICILYNCKMSYTTLKAYMALFLLLESFVVGFFVSLNAISFYVFFEAVLIPMFFIIGIW 146 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM-SKFPFSIQYWMWIA 214 GG R+YA +K FLYT GS+ L +V + T +I L + +Q +WIA Sbjct: 147 GGKHRVYATFKLFLYTLTGSLLFLLGLVYIYNIFGTFNIQKLATLVPSLDLEVQSLLWIA 206 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF SFAIK+PMFPFHTWLP+AHVQ+PT+GSV LAG+++KMGGYG +RF +P+ P AS YF Sbjct: 207 FFISFAIKVPMFPFHTWLPDAHVQSPTSGSVILAGLLIKMGGYGFLRFSIPMLPQASLYF 266 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 + + LS+IA+IYASLV+ Q DIKKLIAYSSIAHMG VT G+FS + GV G++FQM+ Sbjct: 267 SNFVVVLSIIAVIYASLVAFAQDDIKKLIAYSSIAHMGIVTAGLFSFCEEGVLGSIFQMI 326 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGL+S+ALF CVG++Y R T +I Y G+V+ MP++ + ++F+MA++GLPGTSGF G Sbjct: 327 SHGLISAALFLCVGMLYTRTGTLEIAKYFGIVNTMPKFGFMFILFSMASIGLPGTSGFAG 386 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFL ++ +F++ + G +LSA+Y L L +++++GVS + + L E + Sbjct: 387 EFLAMVGMFKSIGFFTGFIALGTILSAVYMLNLCKQIIWGVSYSKLLNN--RLDSIEFSV 444 Query: 455 VYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 + +AV + G YP + +++++ Y Sbjct: 445 LILLAVFVILLGFYPTLALNYLKPCMANLLVKYN 478 >gi|116621438|ref|YP_823594.1| proton-translocating NADH-quinone oxidoreductase subunit M [Candidatus Solibacter usitatus Ellin6076] gi|116224600|gb|ABJ83309.1| proton-translocating NADH-quinone oxidoreductase, chain M [Candidatus Solibacter usitatus Ellin6076] Length = 516 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 206/499 (41%), Positives = 311/499 (62%), Gaps = 20/499 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LSIV F P +G+ V+LF + G + F+ SL + FD + +Q + Sbjct: 5 LSIVLFTPLVGLLVLLFIPSSNVRAIKLWANVAGF--LGFLVSLPLVFNFDHTKD-YQFV 61 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E WI +YH+G+DG+ +LLV+LTT + ILSSW +I E +EY FL+L++ Sbjct: 62 ERASWIPSLGATYHIGIDGLGLLLVMLTTVVGFLAILSSWNAIHERLKEYYAFFLLLQTG 121 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F++LD LLF++F+E L+PM+ IIG+WGG R+YAA KF +YT GS+ M I+ Sbjct: 122 MLGVFMALDFLLFFVFWETVLVPMYFIIGIWGGPRRVYAAIKFMIYTLIGSVLMFLGILT 181 Query: 185 MCWEK----KTSS--IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + ++ +T S I DL + + +W++ AFF FA+K+PMFPFHTWLP+AH + Sbjct: 182 LYYQHMQQFQTPSFDIADLMRL-QLTGPTAWWVFWAFFVGFAVKVPMFPFHTWLPDAHTE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF----FLSLIAIIYASLVSM 294 APTAGSV LA ++LKMG YG +RF LPL P +++ PVI LSLI I+Y +L + Sbjct: 241 APTAGSVVLASVLLKMGTYGFLRFSLPLLPESAK--NPVIINAMGVLSLIGIVYGALACL 298 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 +Q D KKL+AYSS++H+G+ T+GIFS +G+ G++ Q ++HG+ + LF VGV+Y+R Sbjct: 299 MQKDWKKLVAYSSVSHLGFCTLGIFSLNPAGISGSILQQINHGISTGMLFLIVGVVYERR 358 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 HTR+I YGGL+ MP + ++ ++ +++MG+P +GFIGE ++ +Q S AV A+ Sbjct: 359 HTREISEYGGLLKVMPVFTIIFLLAALSSMGMPPLNGFIGELTILGGAYQMSFNWAVWAA 418 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 G+ L A Y LWL+++ + G K EK LKDLS RE + P+ + G+ P P Sbjct: 419 IGIALGAAYLLWLFQRTMLGEVK-EKNALLKDLSWREIAVFAPLVAWAFWIGLNPQPYFR 477 Query: 475 TFSVPLSSIIENYTLKTGY 493 P++ I+E ++ GY Sbjct: 478 VLERPVAQIVER--VRPGY 494 >gi|24080117|ref|NP_705907.1| NADH dehydrogenase subunit 4 [Cryptococcus neoformans var. grubii] gi|23630296|gb|AAN37586.1| NADH dehydrogenase subunit 4 [Cryptococcus neoformans var. grubii] Length = 483 Score = 366 bits (939), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 191/467 (40%), Positives = 302/467 (64%), Gaps = 6/467 (1%) Query: 6 LSIVTFLPFLGVFVIL-FSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 L+ + +P LG +L + G VAL +S I FI S+ +W FD + +Q Sbjct: 2 LTTLIVIPLLGSLALLPMNDTTAAGADRIKKVALVVSLIVFILSVIMWGEFDSSATQYQF 61 Query: 65 IEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 ++ ++ + FC ++G+DGIS+ V+LTTF+TP C+LS W ++ N + ++I+FLV+ES Sbjct: 62 VQEFNTLS-FCHLNIGIDGISLYFVLLTTFITPLCLLSQWSNVHFNVKYFVISFLVMESF 120 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIV 183 +I F+ LD++LFY+F+E+ L+PMF+I+G+WGGS R+ A + FLYT GS+FML AI+ Sbjct: 121 LIAFFVVLDLILFYVFYESVLVPMFLIVGIWGGSASRVRATFLLFLYTLAGSLFMLLAIM 180 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 V+ + T+ ++ +++ F Q +W+ FF SFA+K P+ PFH WLP AH +AP G Sbjct: 181 VIYYNVGTTDF-NVLSLNDFSAGAQKILWLGFFLSFAVKTPLVPFHVWLPRAHAEAPVGG 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA + LK+ YG +R L+ + P A+ YF+P++ +++I +IY+SL ++ Q+D K L+ Sbjct: 240 SMLLASVFLKLATYGFLRILVGMMPDATSYFSPLVQTIAIITLIYSSLATLRQSDFKALV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG-VIYDRLHTRDIFAY 362 AYSSI+HM V +G+FS G+EGA+ ++HG+VS ALF VG V+YD HTR I Y Sbjct: 300 AYSSISHMAVVVLGVFSNTIIGIEGAIALSVAHGVVSPALFVLVGSVLYDIYHTRVIRYY 359 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL MP ++++ + TM NMG+P + + GE + + FQ S + +LAS +VLSA Sbjct: 360 RGLAVYMPLFSLIFFITTMCNMGVPLSLNWTGEVMSLAGTFQQSPIIGLLASSSIVLSAC 419 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 YS++L+ ++ FG S + + KD+S RE ++ P+ ++ V GI P Sbjct: 420 YSIFLFNRLAFG-SFSKYLTYPKDMSRREFMLLAPMLIVAVVLGIMP 465 >gi|330339534|ref|YP_004376734.1| NADH dehydrogenase subunit 4 [Corallium konojoi] gi|328750575|dbj|BAK18836.1| NADH dehydrogenase subunit 4 [Corallium konojoi] Length = 482 Score = 366 bits (939), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 199/420 (47%), Positives = 280/420 (66%), Gaps = 8/420 (1%) Query: 59 RSSFQMIEYYHWIDYFCSYH-----LGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 + FQ I ++W+ + DGISI +VL+T LTP CIL SW SI+ +E Sbjct: 53 EAQFQQIIEFNWVSTIGWFEGSPILFATDGISIFFIVLSTLLTPICILVSWHSIKFLVKE 112 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 +++ L +E ++IG F +LD+L+FY+ FE+ LIPMF+IIGVWG +E+I AAY FF YT Sbjct: 113 FIMCLLGIELLLIGVFSTLDILIFYVLFESILIPMFLIIGVWGARAEKIKAAYYFFFYTL 172 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 GSI ML +I V+ T+ + L + +P SIQ W++I FF S A+KIPM PFH WL Sbjct: 173 VGSILMLLSIAVIYRITGTTDYLSLTNIQIYP-SIQIWLFIGFFLSLAVKIPMIPFHIWL 231 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P AHV+AP AGSV LAGI+LK+GGYG IRF P+FP A++Y AP+I LSLIA+IY SL Sbjct: 232 PLAHVEAPLAGSVILAGILLKLGGYGFIRFAWPIFPEATEYLAPIILMLSLIAVIYGSLT 291 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q D K+LIAYSS+AHMG VTIG+F+ G+ ++F M++HG+VS ALF V ++Y+ Sbjct: 292 TCRQVDAKRLIAYSSVAHMGIVTIGLFTHTMEGLIASIFLMIAHGVVSPALFIAVTLLYE 351 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R HTR + Y G+V MP +++V MVFT+AN+ +P + F+GEFL +++ F S ++ VL Sbjct: 352 RHHTRLVRYYRGVVMTMPLFSIVFMVFTLANIAVPLSCNFVGEFLSLVAAFSTSTSLGVL 411 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 S +V++A YSL+LY ++ FG + +D++ RE P+ V V GI P P+ Sbjct: 412 TSSSMVIAAAYSLYLYNRICFGQLSPYLIFS-RDINRREFNGQLPLIVAIVLLGIVPYPL 470 >gi|254368977|ref|ZP_04984990.1| hypothetical protein FTAG_00807 [Francisella tularensis subsp. holarctica FSC022] gi|157121898|gb|EDO66068.1| hypothetical protein FTAG_00807 [Francisella tularensis subsp. holarctica FSC022] Length = 529 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 203/516 (39%), Positives = 306/516 (59%), Gaps = 47/516 (9%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MNL LS++ +LP +G FV+L + VAL S + + + + FD Sbjct: 1 MNLGNYLLSLIIWLPIVGGFVVLATRTKELHGDVARWVALVFSCLTLALCVPLVTSFDYS 60 Query: 59 RSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 S+ Q E W F Y LGVDG S+L +VLT+F T +L++W SI+ R+Y Sbjct: 61 SSAMQFQESVKWFKVFGMHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWTSIKTKVRQY 120 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+ + G F + D +L+Y+F+EA LIP + IG+WGG + YAA K+F+YTFFG Sbjct: 121 MAIFLITCGLTNGVFCATDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFG 180 Query: 175 SIFMLFAIVVM------------------------CWEKKTSSIIDLYAMSKFPFSIQYW 210 S+F+L AI+ + W ++ ID KF + Q+ Sbjct: 181 SVFLLVAILYIQTRVAASPTHFLVNQDTYSIQNFIAWATQSQGFID---SVKFTLTAQWL 237 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ AFF +FA+KIPM+PFH+WLP+AH +AP GSV LA +MLK+G YG +RF +P+ P Sbjct: 238 VFGAFFLAFAVKIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEV 297 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS---------- 320 + V+ +SLIAI+Y +V++ QTD+K+LIAYSSI+HMG VT+G+FS Sbjct: 298 TASLEYVLIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPV 357 Query: 321 ----GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 + ++GA+FQM++H S +F +G +Y R+HTR+I + G+ MP +A Sbjct: 358 LGTTHAQLALQGAVFQMIAHAFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFF 417 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 ++F MAN+GLPGTSGF+GEF+++++VFQ S +A++A +V++ +Y+LW+Y++V FG Sbjct: 418 LLFCMANVGLPGTSGFVGEFMILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFFGEV 477 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +V L DL+ E + +AV + FG YP PI Sbjct: 478 VSTQVASLTDLNRMELFVFILLAVPILLFGFYPEPI 513 >gi|225848111|ref|YP_002728274.1| NADH-quinone oxidoreductase subunit mu [Sulfurihydrogenibium azorense Az-Fu1] gi|225644517|gb|ACN99567.1| NADH-quinone oxidoreductase subunit m (nadhdehydrogenase i subunit m) (ndh-1 subunit m) [Sulfurihydrogenibium azorense Az-Fu1] Length = 502 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 196/427 (45%), Positives = 275/427 (64%), Gaps = 14/427 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKS-IQENFR 112 +D Q E Y WI F +Y +GVD +S+ +V LT F + W + I++ + Sbjct: 57 YDPSGYKIQFYEKYSWIPQFGINYEVGVDALSLTMVWLTA--ISFVVAFIWSTNIEKRIK 114 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF 172 EY +AFLVLE+ IG F++ D++ FY+F+E LIPMF+IIGVWG +ERIYAA KFF+YTF Sbjct: 115 EYFVAFLVLEAACIGVFVAWDLVAFYVFWEVMLIPMFLIIGVWGYAERIYAATKFFIYTF 174 Query: 173 FGSIFMLFAIVVM-CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFC----SFAIKIPMFP 227 FGS+F+L ++ M + ++++ + S+ + + I FF FAIK+PM+P Sbjct: 175 FGSLFLLIGVIGMYIYNYMENNVLSMSYFDLLKLSLPHNLEIIFFLLLALGFAIKVPMWP 234 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 FHTWLP AHVQAPTAGSV LA ++LKMG YG +RF LP FP AS+YF PV+F L +IAII Sbjct: 235 FHTWLPAAHVQAPTAGSVILAAVLLKMGTYGFVRFNLPWFPEASKYFVPVMFALGVIAII 294 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 Y +++++ QT IK+LIAYSS++HMG+VTIG F+ GV GA+ M+SHGL S ALF Sbjct: 295 YTAMMAIAQTHIKRLIAYSSVSHMGFVTIGTFALNTEGVNGAIITMISHGLTSGALFLAA 354 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 G IY+RLH+ ++ GG+ +P +A + M+ MA+ GLPG SGF+GEFL ++ F+ S Sbjct: 355 GFIYERLHSYEMKDLGGMAKFVPVFATLFMISAMASAGLPGLSGFVGEFLALLGTFKVSI 414 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV-----QQLKDLSLRERCMVYPIAVLT 462 A LA +V+ A Y+LWLY++ +F + LKDL+ E P+ + Sbjct: 415 LTAALAGLSLVVGAAYTLWLYKRTMFEEELLTEEKKKEYSHLKDLNTAELWSFLPLVIFM 474 Query: 463 VFFGIYP 469 GIYP Sbjct: 475 FVIGIYP 481 >gi|164421029|ref|YP_001648480.1| NADH dehydrogenase subunit 4 [Aplysina fulva] gi|158668078|gb|ABW76541.1| NADH dehydrogenase subunit 4 [Aplysina fulva] Length = 475 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 212/487 (43%), Positives = 306/487 (62%), Gaps = 19/487 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK-GRSSFQM 64 L++V P +G+F+++ +S + +AL S ++ +W+ FD+ G+ Sbjct: 2 LNLVFMFPLIGIFLLIITSRDKTEKLK--KIALEWSLFTLTATILLWASFDREGQIQIIK 59 Query: 65 IEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 + I+ F GVDG+SI V+LT L P C+L SW SI+ +E+++ ++E Sbjct: 60 KINWIIIEPLFGPIIFGVDGVSIFFVILTALLIPICVLISWNSIKYLIKEFLLCLFLIEI 119 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAI 182 ++IG F LD++ FYI FE LIPMF+IIG+WG E++ AAY FF YTF GS+FML I Sbjct: 120 LLIGVFTILDLIGFYILFEGILIPMFLIIGIWGSREEKVQAAYYFFFYTFIGSVFMLLGI 179 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + T+ D A+ F QY +++ FF S AIKIP PFH WLP AHV+AP Sbjct: 180 FTLYSLTGTT---DYQALCSLNFEKYTQYLIFMGFFFSLAIKIPKIPFHIWLPQAHVEAP 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGSV LAGI+LK+GGYG +RF PL P AS+YF+P+I LS++AIIY SL + Q D K Sbjct: 237 VAGSVILAGILLKLGGYGFLRFSWPLLPDASEYFSPLIQTLSVLAIIYGSLTTCRQVDFK 296 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 ++IAYSS+AHMG VT+GIFS G+ A++ ML+HGLVSSALF V +Y+R HTR I Sbjct: 297 RIIAYSSVAHMGLVTLGIFSHSTQGLIAAIYLMLAHGLVSSALFIAVTFLYERHHTRLIK 356 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 Y G+ MP ++++ ++F + N+G+P + FIGEFL +++ F+ S V LAS G+VLS Sbjct: 357 YYRGITIPMPLFSILFLIFILVNIGIPLSCNFIGEFLSLLAAFEYSYIVGALASLGIVLS 416 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 A YS++LY +V FG + + + +DLS RE ++ P+ +L G++PV I D Sbjct: 417 AAYSMYLYNRVCFG-TPSKSLNFSRDLSRREFYVLLPLVLLVFIIGVFPVIITD------ 469 Query: 481 SSIIENY 487 +I+NY Sbjct: 470 --VIKNY 474 >gi|330339520|ref|YP_004376721.1| NADH dehydrogenase subunit 4 [Paracorallium japonicum] gi|328750561|dbj|BAK18823.1| NADH dehydrogenase subunit 4 [Paracorallium japonicum] Length = 482 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 198/420 (47%), Positives = 280/420 (66%), Gaps = 8/420 (1%) Query: 59 RSSFQMIEYYHWIDYFCSYH-----LGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 + FQ I ++W+ + +DGISI +VL+T LTP CIL SW SI+ RE Sbjct: 53 EAQFQQIIEFNWVSTIGWFEGSPILFAIDGISIFFIVLSTLLTPICILVSWDSIKFLVRE 112 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 +++ L +E ++IG F +LD+L+FY+ FE+ LIPMF+IIGVWG +E+I AAY FF YT Sbjct: 113 FIMCLLGIELLLIGVFSTLDILIFYVLFESILIPMFLIIGVWGARAEKIRAAYYFFFYTL 172 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 GSI ML +I V+ T+ + L + + SIQ W++I FF S A+KIPM PFH WL Sbjct: 173 VGSILMLLSIAVIYRITGTTDYLSLTNIQIYT-SIQIWLFIGFFLSLAVKIPMIPFHIWL 231 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P AHV+AP AGSV LAGI+LK+GGYG IRF P+FP A++Y AP+I LSLIA+IY SL Sbjct: 232 PLAHVEAPLAGSVILAGILLKLGGYGFIRFAWPIFPEATEYLAPIILMLSLIAVIYGSLT 291 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q D K+LIAYSS+AHMG VT+G+F+ G+ ++F M++HG+VS ALF V ++Y+ Sbjct: 292 TCRQVDAKRLIAYSSVAHMGIVTVGLFTHTMEGLIASIFLMIAHGVVSPALFIAVTLLYE 351 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R HTR + Y G+V MP +++V MVFT+AN+ +P + F+GEFL +++ F S ++ VL Sbjct: 352 RHHTRLVRYYRGVVMTMPLFSIVFMVFTLANIAVPLSCNFVGEFLSLVAAFSTSTSLGVL 411 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 S +V++A YSL+LY ++ FG + +D++ RE P+ V V GI P P+ Sbjct: 412 TSSSMVIAAAYSLYLYNRICFGQLSPYLIFS-RDINRREFNGQLPLIVAIVLLGIVPHPL 470 >gi|257459154|ref|ZP_05624273.1| NADH-quinone oxidoreductase, m subunit [Campylobacter gracilis RM3268] gi|257443539|gb|EEV18663.1| NADH-quinone oxidoreductase, m subunit [Campylobacter gracilis RM3268] Length = 509 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 208/473 (43%), Positives = 301/473 (63%), Gaps = 18/473 (3%) Query: 5 FLSIVTFLPFLGVFVILFSSYLG--CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 FLS+V F P + ++ LG S A+ +S I F+ SL +W +++ Sbjct: 4 FLSLVIFFPAV-------AAVLGFLIDEASIKTYAVTMSFIEFVLSLVLWILYEPVDGIA 56 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + + +Y +Y +GVDGIS+ LV+L+T +T +LS SI+E + +I L LE Sbjct: 57 FSVLHPFISEYGINYFIGVDGISLFLVILSTLVTFLALLS--LSIKERAKNLIICILFLE 114 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++G F++LD +LFYIF+E SLIPM IIG WG +RIYAA KFF+YTF GS+F+L + Sbjct: 115 MTMVGVFVALDAILFYIFWELSLIPMLYIIGAWGSGKRIYAAVKFFIYTFLGSMFLLVGL 174 Query: 183 VVMCW--EKKTS----SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 V M + + T +I++ ++S P Q +++AF +FAIK P FPFHTWLP AH Sbjct: 175 VAMSYFYHEATGEYSFNILNWQSLS-LPLGTQIPLFLAFSIAFAIKTPCFPFHTWLPYAH 233 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 QAPT GSV LA ++LKMG YG +RF LPLFP AS YF+ ++ ++++ I+YAS ++ Q Sbjct: 234 GQAPTIGSVLLAAVLLKMGTYGFVRFSLPLFPDASVYFSGMMCAVAIVMIVYASFIAFAQ 293 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 DIK++IAYSSIAHMG + +GIFS + G+ GA+F M+SHG+VS LF VG +YDR HT Sbjct: 294 KDIKQVIAYSSIAHMGVIMLGIFSMSREGISGAVFLMISHGIVSGGLFMLVGFLYDRRHT 353 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 + +GGL MP YA V + ++GLP T GF+GEFL ++ +F+ S + A+L G Sbjct: 354 KLFGEFGGLARVMPLYAFCFCVVLLGSIGLPLTIGFVGEFLSLVGIFKISFSYALLGGLG 413 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +++ A+YS+ LY+K FG E+ ++L DL+ E C + PI VL V G+ P Sbjct: 414 IIMGAIYSMNLYKKTFFGALVHEENKKLSDLNRTELCSIIPICVLVVVLGVAP 466 >gi|34556911|ref|NP_906726.1| NADH dehydrogenase subunit M [Wolinella succinogenes DSM 1740] gi|34482626|emb|CAE09626.1| NADH-UBIQUINONE OXIDOREDUCTASE, NQO13 SUBUNIT NQO13 [Wolinella succinogenes] Length = 506 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 198/443 (44%), Positives = 284/443 (64%), Gaps = 14/443 (3%) Query: 52 WSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE- 109 W+ FD Q I + + Y +Y +GVDGIS+ L++L TF++ L + S+ E Sbjct: 45 WANFDTQSGEMQFIHHLPLVASYGINYFVGVDGISLFLIILATFIS----LIGFISLNEP 100 Query: 110 -NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFF 168 ++ +++ L LE++++G F +LD +LFY+F+E SL+PM IIG WG +RIYAA KFF Sbjct: 101 NETKKLIVSLLFLETIMVGVFSALDAILFYLFWELSLVPMLYIIGAWGSGKRIYAAVKFF 160 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 LYTF GS+ ML ++ + + SI+D + M P +Q W++IAFF AIK Sbjct: 161 LYTFTGSLVMLVGMLYFAYTYYQTTGIWTFSILD-WHMLVLPLELQKWLFIAFFAGIAIK 219 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +PMFPFHTWLP AH QAPT GS+ LA ++LKMG YG +RF LPLFP AS FA I L Sbjct: 220 VPMFPFHTWLPYAHGQAPTIGSIILAAVLLKMGTYGFVRFSLPLFPDASVAFAIPIAILC 279 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 L+ IIY ++V+ Q D+K++IAYSSI+HMG + +G F+ G+ G++F MLSHG+VS A Sbjct: 280 LVMIIYGAMVAYAQEDMKQVIAYSSISHMGVIVLGTFALNVEGISGSIFFMLSHGIVSGA 339 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF VGVIY+R HT+ I GG+ MP YA + + MA++GLP T GF+GEFL ++ Sbjct: 340 LFMLVGVIYERRHTKLIAKMGGIASVMPYYATIFGLMLMASVGLPLTMGFVGEFLSLLGF 399 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 F+ S +A LA ++L ++Y L L+++V FG CE+ LKDL+ E + P+ V+ Sbjct: 400 FKASPWIAFLAGTSIILGSVYMLVLFKRVFFGKVTCEENAALKDLNGTELAALLPLVVVV 459 Query: 463 VFFGIYPVPIRDTFSVPLSSIIE 485 ++ GIYP PI V + ++E Sbjct: 460 IWLGIYPKPILAPIDVSVKGMME 482 >gi|153006992|ref|YP_001381317.1| proton-translocating NADH-quinone oxidoreductase subunit M [Anaeromyxobacter sp. Fw109-5] gi|152030565|gb|ABS28333.1| proton-translocating NADH-quinone oxidoreductase, chain M [Anaeromyxobacter sp. Fw109-5] Length = 534 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 206/479 (43%), Positives = 310/479 (64%), Gaps = 12/479 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD--KG 58 MNL L++VTFLP G ++ G+ ++ + T L W FD G Sbjct: 1 MNL--LTVVTFLPAAGALALVLVPRDEPGQHRAITLSFSLLTFLLSLGL--WFGFDASPG 56 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 FQ ++ WI YH+G+DG+++LLV+LTT LTP ILS+W++++E +E+MIA Sbjct: 57 APEFQFEQFTPWIQSIGIGYHVGLDGVALLLVMLTTVLTPIVILSAWRAVEERVKEFMIA 116 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 LVLE+ +IG F +LD++LFY+F+E L+PM+++IGVWG R+YA KFF+YTF S+ Sbjct: 117 LLVLETAMIGTFAALDLVLFYVFWELILVPMYLLIGVWGSQNRLYATVKFFVYTFAASVL 176 Query: 178 MLFAIV-VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML AI+ V + T + W+++AF +FA+K+PMFP HTWLP+AH Sbjct: 177 MLLAILYVYFHDGGTFDYVQARQSLAVTPQAAGWLFLAFALAFAVKVPMFPLHTWLPDAH 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +APTAGSV LAG++LKMG +G R+ LPLFP A+ + I L++I IIY +L+S+VQ Sbjct: 237 TEAPTAGSVILAGVLLKMGTFGFFRYALPLFPEAALQYRTAIATLAVIGIIYGALMSLVQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K+L+AYSS++H+G+V +G+ + G+ G+++QML+HG+ + ALF VG++Y+R HT Sbjct: 297 TDMKRLVAYSSVSHLGFVMLGLVALSAEGLTGSVYQMLNHGVSTGALFLIVGMLYERRHT 356 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI----MSVFQNSNTVAVL 412 R I YGGL +P A ++ T++++GLPGT+GF+GEFL++ +S Q+++ A L Sbjct: 357 RLIAEYGGLARQVPLIATAFVIVTLSSVGLPGTNGFVGEFLILSGSWLSRLQSASLFATL 416 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + GV+L A+Y L L +V FG + + L DLS+RE ++ P+ L V GI P P Sbjct: 417 GALGVILGAVYMLILVERVFFGPMRNPANRGLPDLSVREGFVLAPMIALIVVMGILPGP 475 >gi|89257078|ref|YP_514440.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. holarctica LVS] gi|115315435|ref|YP_764158.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. holarctica OSU18] gi|156503292|ref|YP_001429357.1| NADH dehydrogenase I, subunit M [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009470|ref|ZP_02274401.1| proton-translocating NADH-quinone oxidoreductase, chain m family protein [Francisella tularensis subsp. holarctica FSC200] gi|254368314|ref|ZP_04984332.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. holarctica 257] gi|290953001|ref|ZP_06557622.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. holarctica URFT1] gi|295313821|ref|ZP_06804394.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. holarctica URFT1] gi|89144909|emb|CAJ80257.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. holarctica LVS] gi|115130334|gb|ABI83521.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica OSU18] gi|134254122|gb|EBA53216.1| NADH dehydrogenase I, M subunit [Francisella tularensis subsp. holarctica 257] gi|156253895|gb|ABU62401.1| NADH-quinone oxidoreductase, subunit M [Francisella tularensis subsp. holarctica FTNF002-00] Length = 529 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 203/516 (39%), Positives = 306/516 (59%), Gaps = 47/516 (9%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MNL LS++ +LP +G FV+L + VAL S + + + + FD Sbjct: 1 MNLGNYLLSLIIWLPIVGGFVVLATRTKELHGDVARWVALVFSCLTLALCIPLVTSFDYS 60 Query: 59 RSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 S+ Q E W F Y LGVDG S+L +VLT+F T +L++W SI+ R+Y Sbjct: 61 SSAMQFQESVKWFKVFGMHDIYYSLGVDGFSVLFIVLTSFATLVIVLAAWISIKTKVRQY 120 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+ + G F + D +L+Y+F+EA LIP + IG+WGG + YAA K+F+YTFFG Sbjct: 121 MAIFLITCGLTNGVFCATDSILYYVFWEALLIPTCLGIGIWGGKHKAYAAVKYFMYTFFG 180 Query: 175 SIFMLFAIVVM------------------------CWEKKTSSIIDLYAMSKFPFSIQYW 210 S+F+L AI+ + W ++ ID KF + Q+ Sbjct: 181 SVFLLAAILYIQTRVAASPTHFLVNQDTYSIQNFIAWATQSQGFID---SVKFTLTAQWL 237 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ AFF +FA+KIPM+PFH+WLP+AH +AP GSV LA +MLK+G YG +RF +P+ P Sbjct: 238 VFGAFFLAFAVKIPMWPFHSWLPDAHSEAPAGGSVILAALMLKLGAYGFLRFAIPMLPEV 297 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS---------- 320 + V+ +SLIAI+Y +V++ QTD+K+LIAYSSI+HMG VT+G+FS Sbjct: 298 TASLEYVLIIMSLIAIVYVGVVAVAQTDVKRLIAYSSISHMGLVTLGLFSIFILKNADPV 357 Query: 321 ----GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 + ++GA+FQM++H S +F +G +Y R+HTR+I + G+ MP +A Sbjct: 358 LGTTHAQLALQGAVFQMIAHAFSSGGMFIGIGYLYLRMHTREISDFSGVAKTMPIFATFF 417 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 ++F MAN+GLPGTSGF+GEF+++++VFQ S +A++A +V++ +Y+LW+Y++V FG Sbjct: 418 LLFCMANVGLPGTSGFVGEFMILLAVFQYSPLIALIAGLTLVIAPIYTLWMYKRVFFGEV 477 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +V L DL+ E + +AV + FG YP PI Sbjct: 478 VSTQVASLTDLNRMELFVFILLAVPILLFGFYPEPI 513 >gi|10802930|gb|AAG23678.1|AF288091_23 NADH dehydrogenase subunit 4 [Thraustochytrium aureum] Length = 488 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 201/473 (42%), Positives = 311/473 (65%), Gaps = 11/473 (2%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 + ++S + F PF G + FSS+ R + L I+ SLF+W FD S+F Sbjct: 1 MNYISTIIFFPFFGSLFLCFSSF---DHRFLKQIGLFSCLISLSISLFIWVFFDNSTSNF 57 Query: 63 QMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIA 117 Q +E + W D S GVDGIS+ V+LT LT C+L SW KSI+ R Y + Sbjct: 58 QFVEEFVWFKDLQWSLVFGVDGISLFFVILTNVLTSLCLLISWHGGNKSIKIT-RNYYAS 116 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSI 176 FLV++S+++ F ++D+++FYIFFE+ LIPMF+IIG+WG ER + A++ FFLYT GS+ Sbjct: 117 FLVIQSLILIVFTTIDLVIFYIFFESVLIPMFIIIGIWGTRERKVRASFLFFLYTLVGSL 176 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 F+L AI+++ +E +++ L S F F Q +W AFF SFA+K+P+ PFH WLP AH Sbjct: 177 FILLAILLIFFEVGSTNYFILIQYS-FSFFHQKILWFAFFISFAVKVPILPFHIWLPEAH 235 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APTAGSV LAGI+LK+G YG IR+ LPLFPL + ++ P+I+ ++ +A++Y S+ ++ Q Sbjct: 236 VEAPTAGSVMLAGILLKLGTYGFIRYSLPLFPLGTLFYKPLIYVIASVAVVYTSITALRQ 295 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TDIK++IAY+S+AH+ IG+FS G+EG++FQ+++HG+VS ALF CVGV+YDR H+ Sbjct: 296 TDIKRVIAYASVAHINMTIIGLFSLNLVGIEGSIFQIIAHGVVSGALFICVGVLYDRYHS 355 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I YGG +P + + F+MAN+ LPGT F+GEF+++ + +++ + +++ Sbjct: 356 RLIQYYGGFSQVIPIFIFFFLFFSMANIALPGTCSFVGEFIILAGIIKDNFFITFISATS 415 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +VL YSLWL+ ++ +G K + + D++ +E ++ + +F GI+P Sbjct: 416 IVLGGGYSLWLFNRISYGSLKMQFISFSSDVTKKEFFVLSSLCFFAIFMGIFP 468 >gi|163854293|ref|YP_001633639.1| NADH dehydrogenase subunit 4 [Negombata magnifica] gi|163639448|emb|CAM06604.1| NADH dehydrogenase subunit 4 [Negombata magnifica] Length = 482 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 210/469 (44%), Positives = 296/469 (63%), Gaps = 10/469 (2%) Query: 12 LPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI 71 LP +G+ +L + R + V L S + + +W+ FD G FQ+++ WI Sbjct: 8 LPLIGILALLITPRDDIMR--LWKVGLEWSLLTLTGTKLLWASFD-GDGQFQVVKRLDWI 64 Query: 72 DY----FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 F LGVDGISI ++LT L P C+L SW SI+ +E+++ L +E +++G Sbjct: 65 PGVEPGFGFVILGVDGISIFFIILTALLIPICVLISWNSIRFLIKEFLLCLLFIEVLLMG 124 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 F LD++ FYI FE LIPMF+IIGVWG E+I A+Y FF YTF GS+FML I + Sbjct: 125 VFTILDLVGFYILFEGILIPMFLIIGVWGSREEKIQASYYFFFYTFIGSVFMLLGIFTL- 183 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + S+ K +QY++++ FF S AIKIP PFH WLP AHV+AP AGSV Sbjct: 184 YSYAGSTDYQTLCCLKLEKELQYFVFLGFFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVV 243 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAG++LK+GGYG IRF PL P AS+YF P+I LSL AIIY SL + Q D+K++IAYS Sbjct: 244 LAGVLLKLGGYGFIRFSWPLLPDASEYFGPLILTLSLFAIIYGSLTTCRQVDLKRIIAYS 303 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+AHMG VT+G+FS G+ A+F ML+HGLVSSALF V +YDR HTR I Y G+V Sbjct: 304 SVAHMGLVTLGLFSHTVQGLVAAVFLMLAHGLVSSALFIAVTFLYDRYHTRLIKYYRGMV 363 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP + +++++ +AN +P + FIGEFL +++ F+ S VLAS G+VLSA YS++ Sbjct: 364 ITMPLFGMLLLILVLANASIPLSCNFIGEFLSLLAAFEYSFIAGVLASVGMVLSAGYSIY 423 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 +Y ++ FGVS + + +DL+ RE + P+ +L + G++P + D Sbjct: 424 MYNRICFGVSS-KYLYFSRDLNRREFYSLLPLVILIILMGVFPFSVVDE 471 >gi|317153011|ref|YP_004121059.1| proton-translocating NADH-quinone oxidoreductase subunit M [Desulfovibrio aespoeensis Aspo-2] gi|316943262|gb|ADU62313.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio aespoeensis Aspo-2] Length = 510 Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 195/436 (44%), Positives = 280/436 (64%), Gaps = 4/436 (0%) Query: 57 KGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 K + FQ +E W+ + Y LGVDGISIL+V LT + P C++ SW I + +E+ Sbjct: 53 KPNADFQFVERLDWVHQWNLEYFLGVDGISILMVWLTLAVLPLCVMCSWTYIGKRVKEFH 112 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L + S V+G F +LD++LFY+F+EA LIPM+++I VWGG +R YA+ KFFLYT GS Sbjct: 113 FCLLFMTSAVLGVFCALDLVLFYVFWEAMLIPMYLLIAVWGGDDRKYASLKFFLYTLTGS 172 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L AIV T +I +L + F F Q+W ++A +FAIK+PMFPFHTWLP A Sbjct: 173 TLLLAAIVAFRITGGTFAIPELMEQT-FTFRFQFWAFLAMALAFAIKVPMFPFHTWLPAA 231 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAP+AGSV LA ++LKMG YG +RF LPL P AS+YFAP++ +S+++IIY +++ Sbjct: 232 HVQAPSAGSVILAAVLLKMGTYGFLRFCLPLTPAASEYFAPMMIAISIVSIIYGGAIALG 291 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTDIKKL+AYSS+ HMG+VT+GIF + GVEGA+FQML+HG+V+ ALF +G +Y+R H Sbjct: 292 QTDIKKLVAYSSVGHMGFVTLGIFLFNQRGVEGALFQMLNHGIVTGALFMMIGAVYERSH 351 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 +RDI GL +MP + + +A+ G PGT+GF+GE LV + FQ S + +L Sbjct: 352 SRDIEKNMGLGKHMPAFMFFWGLMALASFGFPGTNGFVGEILVFVGAFQESIWLGMLCVP 411 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G +L+A Y + K+ +G K + KDL+ RE + AV + G+ P Sbjct: 412 GALLAAAYMFRVSLKMAWGQPSSAK--KWKDLNAREWVYLTIPAVFVFWIGLNPALFFKV 469 Query: 476 FSVPLSSIIENYTLKT 491 ++ ++EN+ + Sbjct: 470 IDPSVNKLLENFDKRK 485 >gi|317097390|ref|YP_004123597.1| NADH dehydrogenase subunit 4 [Plakina crypta] gi|308912603|gb|ADO51369.1| NADH dehydrogenase subunit 4 [Plakina crypta] Length = 488 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 213/452 (47%), Positives = 293/452 (64%), Gaps = 17/452 (3%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHW--------IDYFCSYHLGVDGISILLVVLTTFLTPFC 99 ++ +W FD G FQ ++ W I + VDGIS+ ++LT LTP C Sbjct: 42 TIVLWVTFD-GEGQFQALKIIEWTTPSMGGGIWSSGTVVFAVDGISVFFLILTAILTPIC 100 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-S 158 IL SW SI+ +E+++ LVLE +++G FL LD+LLFYI FE LIPMF+IIGVWG Sbjct: 101 ILISWNSIKFLLKEFLLCLLVLEILLMGVFLILDLLLFYILFEGILIPMFLIIGVWGSRE 160 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS 218 E++ A+Y FF YT GS+ ML I V+ T+ L + K +Q W+++ FF S Sbjct: 161 EKVLASYYFFFYTLIGSVLMLLGIFVIYSNTGTTDYQTLCGL-KLNGEVQKWVFLGFFVS 219 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 AIKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PLFP AS+YFAP++ Sbjct: 220 LAIKIPKIPFHIWLPLAHVEAPVAGSVMLAGVLLKLGGYGFIRFSWPLFPEASEYFAPLV 279 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL+AIIYASL + Q D+K++IAYSS+AHMG VT+GIF+ G+ A+F ML+HG Sbjct: 280 QTLSLLAIIYASLTACRQADLKRIIAYSSVAHMGLVTLGIFTHTIQGLVSAVFLMLAHGF 339 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 VSSALF V ++Y+R HTR + Y G+ MP ++++M++ T+AN+ +P + F+GE L Sbjct: 340 VSSALFIIVTLLYERHHTRLVKYYRGVAITMPIFSIIMLLMTLANIAVPLSCNFVGELLS 399 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 +++ F+ S V VLAS G+VL A YSL+LY +V FG + + +DL+ RE ++P+ Sbjct: 400 LLAAFEYSFIVGVLASLGMVLGAAYSLYLYNRVCFG-NTSNFLLFSRDLNRREFYALFPL 458 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSII--ENYT 488 L G+YP I DT SSII E+YT Sbjct: 459 VFLVYLIGVYPSVIIDTVK---SSIIFHESYT 487 >gi|107736219|ref|YP_626515.1| NADH dehydrogenase subunit 4 [Briareum asbestinum] gi|100913619|gb|ABF69706.1| NADH dehydrogenase subunit 4 [Briareum asbestinum] Length = 482 Score = 363 bits (932), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 204/450 (45%), Positives = 291/450 (64%), Gaps = 9/450 (2%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH-----LGVDGISILLVVL 91 AL S I F S+ + + + FQ I + W+ + +DGISI +VL Sbjct: 32 ALEWSLITFALSILLLVNLHQ-EAQFQQIIEFSWVSTIGWFEGSPVLFAIDGISIFFIVL 90 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 +T LTP CIL SW SI+ +E+++ L +E ++IG F +LD+L+FY+ FE+ LIPMF+I Sbjct: 91 STLLTPICILVSWNSIKFLVKEFIMCLLGIELLLIGVFSTLDLLIFYVLFESILIPMFLI 150 Query: 152 IGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW 210 IGVWG +E+I AAY FF YT GSI ML +I V+ T+ + L + + +IQ W Sbjct: 151 IGVWGARAEKIKAAYYFFFYTLVGSILMLLSIAVIYRITGTTDYLSLTNI-QIDSNIQIW 209 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++I FF S A+KIPM PFH WLP AHV+AP AGSV LAGI+LK+GGYG IRF P+FP A Sbjct: 210 LFIGFFLSLAVKIPMIPFHIWLPLAHVEAPLAGSVILAGILLKLGGYGFIRFAWPIFPEA 269 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 ++Y AP+I LSLIA+IY SL + Q D K+LIAYSS+AHMG VTIG+F+ G+ ++ Sbjct: 270 TEYLAPIILTLSLIAVIYGSLTTCRQVDAKRLIAYSSVAHMGIVTIGLFTHTMEGLIASI 329 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 F M++HG+VS ALF V ++Y+R HTR + Y G+V MP +++V MVFT+AN+ +P + Sbjct: 330 FLMIAHGVVSPALFIAVTLLYERHHTRLVRYYRGVVMTMPLFSIVFMVFTLANIAVPLSC 389 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 F+GEFL +++ F S ++ VL S +V++A YSL+LY ++ FG + +D++ R Sbjct: 390 NFVGEFLSLVAAFSTSTSLGVLTSTSMVIAAAYSLYLYNRICFGQLSPYLIFS-RDINRR 448 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 E P+ V V G+ P P+ + V L Sbjct: 449 EFNGQLPLIVAIVLLGVVPYPLIELIRVCL 478 >gi|88658135|ref|YP_507367.1| NADH dehydrogenase I, M subunit [Ehrlichia chaffeensis str. Arkansas] gi|88599592|gb|ABD45061.1| NADH dehydrogenase I, M subunit [Ehrlichia chaffeensis str. Arkansas] Length = 483 Score = 362 bits (930), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 183/347 (52%), Positives = 252/347 (72%), Gaps = 5/347 (1%) Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV-V 184 +G F+SLD+++FYIFFE+ LIPMF IIG+WG +RIYA +K FLYT GS+ L AI+ + Sbjct: 117 VGVFVSLDIVMFYIFFESVLIPMFFIIGMWGHEDRIYATFKLFLYTLSGSLLFLIAILYI 176 Query: 185 MCWEKKTSSIIDL-YAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + K S I L Y +S + Q W+WIAFF SFAIKIP+ PFHTWLP+AHVQAPT Sbjct: 177 YFFSGKISDIGQLTYILSNYLNLKAQKWVWIAFFISFAIKIPVIPFHTWLPDAHVQAPTV 236 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LAGI++K+G Y +RF LP+ P AS YF+ + LS+I +IYASL+S VQT+IKKL Sbjct: 237 GSVLLAGILIKVGTYALLRFSLPMLPEASMYFSNFVMILSIIGVIYASLISFVQTNIKKL 296 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSSIAHMG+VT GIFS + G+ GA+FQM+SHGLVS+ALF CVG++Y+R HT +I Y Sbjct: 297 IAYSSIAHMGFVTAGIFSFNEYGISGAVFQMISHGLVSAALFICVGILYNRTHTLEIVRY 356 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL MP+++++ + F+MA++ LPGTSGFIGEFL I+ +F S ++ + GV+L AL Sbjct: 357 SGLAKTMPKFSIMFIFFSMASIALPGTSGFIGEFLSILGIFHYSKLFSIFITIGVILGAL 416 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Y L+L +++++ V C+ + +L+ E ++ +A + FG+YP Sbjct: 417 YMLFLCKRIIWSVQNCDLINC--NLNKNELFILVILAAFILLFGLYP 461 >gi|307721738|ref|YP_003892878.1| NADH dehydrogenase subunit M [Sulfurimonas autotrophica DSM 16294] gi|306979831|gb|ADN09866.1| NADH dehydrogenase subunit M [Sulfurimonas autotrophica DSM 16294] Length = 519 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 202/487 (41%), Positives = 306/487 (62%), Gaps = 15/487 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ F P L +F + +GV+ ++ I F +L++W VFD S Q + Sbjct: 6 LSLLIFFPALAA---VFGFMIQKESMRVYGVS--VAAIEFALALWLWYVFDGSVSGMQFM 60 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + F +Y LGVDGIS+ +++L+ F T I S + + + +I L L+ Sbjct: 61 ESLPLVPSFGINYTLGVDGISVFIIILSAFFTLLGIGSLTDTPKVKYM--IITLLFLQMT 118 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F +LD ++FYIF+E SL+PM IIG WGG RIYA+ KFFLYTF GS+ ML ++ Sbjct: 119 MVGVFAALDAIVFYIFWELSLVPMLYIIGAWGGPLRIYASIKFFLYTFAGSLVMLVGMLF 178 Query: 185 MCW--EKKTS----SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 M + + T +++D Y + P + Q W++ AFF FAIK+PMFPFHTWLP AH Q Sbjct: 179 MAYFYYQATGVWSFALLDWYRLI-LPETFQLWLFAAFFLGFAIKVPMFPFHTWLPYAHGQ 237 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV LA I+LKMG Y +RF LPLFP AS +F I +++I +IY ++V+ Q D Sbjct: 238 APTIGSVILAAILLKMGTYAFVRFSLPLFPDASAFFMIPIAIIAIIMVIYTAMVAYAQKD 297 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+++AYSSI+HMG + +G F+ G+ G++F ML HG+V+ ALF VGVIYDR HT+ Sbjct: 298 IKQVVAYSSISHMGIIILGTFALNVEGISGSIFLMLGHGVVAGALFLLVGVIYDRRHTKL 357 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + +GGL H MPRYA + + MA++G+P T F+GEFL ++ +Q S+ + +LA G++ Sbjct: 358 MSEFGGLAHVMPRYATIFGIMMMASVGMPLTINFVGEFLSLLGFYQQSHILTLLAGTGII 417 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 + A+Y L Y+K FG EK + L D++ +E + P+ ++ ++ G+YP P+ + + Sbjct: 418 VGAIYMLAAYKKAFFGEVTNEKNKNLPDINKKELFGLIPLVIVAIWLGVYPKPVLEPINN 477 Query: 479 PLSSIIE 485 + SI++ Sbjct: 478 SVKSIVQ 484 >gi|295699443|ref|YP_003607336.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. CCGE1002] gi|295438656|gb|ADG17825.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. CCGE1002] Length = 518 Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 193/498 (38%), Positives = 317/498 (63%), Gaps = 5/498 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M LPFLS++ ++P + FV+L + R+ + +G + F+ + V + F + Sbjct: 1 MPLPFLSLLIWIPIVAGFVVLRAGSDAARNRTRWLALIG-AVAGFLPVIPVVANFRNDVT 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q +E W F ++H+G+DGIS+ LV LT T +++SW+SI + +Y AFL Sbjct: 60 SMQFVENVRWSPTFDIAWHVGIDGISLWLVALTALTTIIIVIASWESITQRTAQYYGAFL 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L + G F SLD ++F+I FEA+LIP++++IG +G R YAA KFF +F GS+ ML Sbjct: 120 MLSGFMQGVFTSLDGMMFFIAFEATLIPLYLLIGTYGHKNRTYAAVKFFFVSFLGSLMML 179 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + + + ++ + Q +++ F +F +K+PM+P HTWLP+ H+ Sbjct: 180 MSLLYLYSQTHSFDLA-VWREAHLDMVPQTLIFLGFLAAFGVKVPMWPLHTWLPDVHLDG 238 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT +V + MLK+GGYG +RF LP+ P AS +FAP++ LSL+A+IY+SL+++VQTD+ Sbjct: 239 PTGAAVMIG--MLKIGGYGLLRFALPIAPQASHFFAPMMITLSLVAVIYSSLLALVQTDM 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 ++L+AYS++AHMG VT+G+F + G GA+ QM+S+G+VS A+ C G++YDR + I Sbjct: 297 RRLLAYSTVAHMGLVTLGLFVFNRFGQAGAIVQMISYGVVSGAMLLCTGMLYDRTKSASI 356 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGG+ + MPR+A +M+F+MAN+GLPGTSGF+GEF+V+M + + + +A+ ++L Sbjct: 357 AEYGGVANTMPRFAGFVMLFSMANIGLPGTSGFVGEFMVLMGAIRFNFWIGAIAATTLIL 416 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y+LW+Y++V+FG +V LKDL RE ++ +A+L + G+ P P D Sbjct: 417 SAAYTLWMYKRVIFGAIANARVANLKDLGKREFALLGALALLVLAIGLNPKPFTDAIDPS 476 Query: 480 LSSIIENYTLKTGYSDSV 497 + +++ SD+V Sbjct: 477 VGTLLAQSERSALPSDNV 494 >gi|73667094|ref|YP_303110.1| proton-translocating NADH-quinoneoxidoreductase, chain M [Ehrlichia canis str. Jake] gi|72394235|gb|AAZ68512.1| NADH dehydrogenase subunit M [Ehrlichia canis str. Jake] Length = 485 Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 192/370 (51%), Positives = 261/370 (70%), Gaps = 8/370 (2%) Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV-V 184 IG F SLD+++FYIFFEA LIPMF IIG+WG +R+YA +K FLYT GS+ L A++ V Sbjct: 117 IGVFASLDIIMFYIFFEAVLIPMFFIIGIWGHEDRVYATFKLFLYTLVGSLLFLIALLYV 176 Query: 185 MCWEKKTSSIIDL-YAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + + S I L Y +S + + Q W+WIAFF SFAIKIP+ PFHTWLP+AHVQAPT Sbjct: 177 YFFSDRVSDIEKLTYILSNYLNLTAQKWVWIAFFVSFAIKIPVVPFHTWLPDAHVQAPTV 236 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LAGI++K+G Y +RF +P+ P AS YFA + LS+IA+IYASL+S VQ +IKKL Sbjct: 237 GSVLLAGILIKIGTYALLRFSIPMLPEASVYFANFVIVLSIIAVIYASLISFVQNNIKKL 296 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSSIAHMG+VT GIFS + G+ GA+FQM+SHGL+S+ALF CVG++Y++ HT +I Y Sbjct: 297 IAYSSIAHMGFVTAGIFSFNEYGISGAVFQMISHGLISAALFTCVGILYNKTHTLEISKY 356 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL MP+++++ + F+MA++ LPGTSGFIGEFL I+ VF S +VL + GV+L AL Sbjct: 357 SGLAKIMPQFSIMFIFFSMASIALPGTSGFIGEFLSILGVFHYSKLFSVLIAVGVILGAL 416 Query: 423 YSLWLYRKVVFGVS-KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y L+L +K+++G + C+ + +LS E ++ +A + FG+YP I PL Sbjct: 417 YMLFLCKKIIWGAAPNCDLIIDC-NLSKSELFILATLAAFILLFGLYPYYILLKCLTPL- 474 Query: 482 SIIENYTLKT 491 +E LK Sbjct: 475 --VEQLYLKN 482 >gi|332702759|ref|ZP_08422847.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio africanus str. Walvis Bay] gi|332552908|gb|EGJ49952.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio africanus str. Walvis Bay] Length = 523 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 205/489 (41%), Positives = 300/489 (61%), Gaps = 8/489 (1%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS + F P L V+ F R + L S + +L ++ FD + FQ Sbjct: 7 PILSSLIFFPLLMCLVLAFVRSDELVRV----ITLAASVAEVLLALPLFG-FDPAQG-FQ 60 Query: 64 MIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E W+ + SY+LGVDGIS+L+V+LT + P C+L SW I + +E+ I L++ Sbjct: 61 FVEQLTWVPQWGLSYYLGVDGISLLMVMLTVGILPLCVLCSWTYIGKRIKEFHICLLLMT 120 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + IG F +LD +LFY+F+EA L+PM+++I VWGG ER YA+ KFFLYT GS +L A+ Sbjct: 121 AACIGVFCALDFVLFYVFWEAMLVPMYLLIAVWGGPERRYASIKFFLYTLAGSTLLLVAM 180 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 V T SI +L S + F Q+W ++A +FAIK+PMFPFHTWLP AHVQAP+A Sbjct: 181 VAFFRAGGTFSIPELMERS-YSFRFQFWAFLAMALAFAIKVPMFPFHTWLPAAHVQAPSA 239 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LA ++LKMG YG +RF LPL P AS YFAPV+ ++ +IIY V++ Q+DIKKL Sbjct: 240 GSVILASVLLKMGTYGFLRFCLPLTPAASAYFAPVMIAFAIASIIYGGFVALGQSDIKKL 299 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+ HMG+ +GIF + GVEG + ML+HG+V+ ALF +G+IY+R H+R+I A Sbjct: 300 IAYSSVGHMGFAMLGIFLFNQRGVEGTLLVMLNHGIVTGALFMMIGLIYERSHSREITAN 359 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P Y +F +++ G PG + F+GE V+ FQ+S V L G +L+A Sbjct: 360 QGLGKFLPAYMGFWGLFALSSFGFPGLNSFVGEAAVMTGAFQHSWLVGALVVPGAMLAAA 419 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y L L ++ +G + +D++ RE + P+AVLT++ G+ P + T + Sbjct: 420 YMLRLSLRMAWGGPASPAGKGWRDMNSREWVYLAPLAVLTIWLGVAPGMVLRTIDPAIER 479 Query: 483 IIENYTLKT 491 ++ ++ K+ Sbjct: 480 LLADFQAKS 488 >gi|189095619|ref|YP_001936203.1| NADH dehydrogenase subunit 4 [Keratoisidinae sp. BAL208-1] gi|148540949|gb|ABQ86198.1| NADH dehydrogenase subunit 4 [Keratoisidinae sp. BAL208-1] Length = 482 Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 205/450 (45%), Positives = 289/450 (64%), Gaps = 9/450 (2%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH-----LGVDGISILLVVL 91 AL S I F S+ + + + FQ I + W+ + VDGISI +VL Sbjct: 32 ALEWSLITFALSILLLVNLHQ-EAQFQQIIEFSWVSTIGWFEGSPILFAVDGISIFFIVL 90 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 +T LTP CIL SW SI+ +E++I L +E ++IG F +LD+L+FY+ FE+ LIPM +I Sbjct: 91 STLLTPICILVSWDSIKFLVKEFIICLLGIELLLIGVFSTLDLLIFYVLFESILIPMCII 150 Query: 152 IGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW 210 IGVWG +E+I AAY FF YT GS+ ML +I V+ T+ + L + + SIQ W Sbjct: 151 IGVWGARAEKIKAAYYFFFYTLVGSVLMLLSIAVIYRITGTTDYLSLTNI-QISTSIQIW 209 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 ++ FF S A+KIPM PFH WLP AHV+AP AGSV LAGI+LK+GGYG IRF P+FP A Sbjct: 210 LFTGFFLSLAVKIPMVPFHIWLPLAHVEAPVAGSVILAGILLKLGGYGFIRFAWPIFPEA 269 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 ++Y AP+I LSLIA+IY SL + Q D K+LIAYSS+AHMG VTIG+F+ G+ ++ Sbjct: 270 TEYLAPIILTLSLIAVIYGSLTTCRQVDAKRLIAYSSVAHMGIVTIGLFTHTMEGLIASI 329 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 F M++HG+VS ALF V ++Y+R HTR + Y G+V MP +++V MVFT+AN+ +P + Sbjct: 330 FLMIAHGVVSPALFIAVTLLYERHHTRLVRYYRGVVMTMPLFSIVFMVFTLANIAVPLSC 389 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 F+GEFL +++ F S ++ VL S +V++A YSL+LY ++ FG + +D++ R Sbjct: 390 NFVGEFLSLVAAFSTSTSLGVLTSTSMVIAAAYSLYLYNRICFGQLSPYLIFS-RDINRR 448 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 E P+ V V GI P P+ + V L Sbjct: 449 EFNGQLPLIVAIVLLGIVPYPLIELIRVCL 478 >gi|51245163|ref|YP_065047.1| NADH dehydrogenase, subunit 4 [Desulfotalea psychrophila LSv54] gi|50876200|emb|CAG36040.1| probable NADH dehydrogenase, subunit 4 [Desulfotalea psychrophila LSv54] Length = 414 Score = 359 bits (922), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 175/378 (46%), Positives = 257/378 (67%), Gaps = 4/378 (1%) Query: 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISI 86 G++ F +A G++ + + +W FD+ S++Q E + WID Y LGVDGISI Sbjct: 34 TGQKWFTLIATGLTALMAL--KLIWG-FDRASSAYQFAELHSWIDAPKIQYALGVDGISI 90 Query: 87 LLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLI 146 LLV++T F+ PFC+L SW I++ R YMI L++E+ ++G F++LD +LFY+ +EA LI Sbjct: 91 LLVLMTAFIMPFCVLVSWTYIKDRIRTYMICLLLMETAMLGVFMALDFVLFYVLWEAMLI 150 Query: 147 PMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS 206 PM+++IG+WGG RIYA+ KFFLYT GSI +L AI+ + S I A + + Sbjct: 151 PMYLLIGIWGGPRRIYASVKFFLYTLTGSILLLVAIIWLYTANNYSFFIPDMAWQHYSMT 210 Query: 207 IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 Q +++AFF +FAIK+PMFPFHTWLP AHV+APTAGSV LA I+LKMG YG +RF LP+ Sbjct: 211 AQTCLFVAFFLAFAIKVPMFPFHTWLPAAHVEAPTAGSVILASILLKMGAYGFLRFALPI 270 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 P A+ F P + LS+ IIY ++ Q D+KKLIAYSS+ HMG+VT+GIF + G+ Sbjct: 271 TPDATLQFLPYVLALSIAGIIYGGFTALAQNDMKKLIAYSSVGHMGFVTLGIFVLNQEGI 330 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 EGA+ QM++HG+ + ALF C+G+IY+R H+R++ + G+ MP + + F +++ Sbjct: 331 EGAILQMINHGITTGALFLCIGMIYERTHSRELLSATGVGKVMPVFVTFLTFFGLSSFAF 390 Query: 387 PGTSGFIGEFLVIMSVFQ 404 PGT+ F+GEF+++ F+ Sbjct: 391 PGTNSFVGEFMILAGTFK 408 >gi|62161301|ref|YP_214867.1| NADH dehydrogenase subunit 4 [Axinella corrugata] gi|55275032|gb|AAV49310.1| NADH dehydrogenase subunit 4 [Axinella corrugata] Length = 484 Score = 359 bits (921), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 210/474 (44%), Positives = 301/474 (63%), Gaps = 10/474 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L +V P +G+F++L + R +AL S ++ +W+ FD G FQ I Sbjct: 2 LGLVFVFPLVGIFLLLITPRENITRLR--KIALEWSLFTLTATILLWASFD-GEGQFQSI 58 Query: 66 EYYHWID----YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 + WI F VDGISI ++LT LTP CIL SW SI+ +E+++ L + Sbjct: 59 KKVEWIPGVEPVFGPALFAVDGISIFFLILTALLTPICILISWSSIRFLIKEFLLCLLSI 118 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLF 180 E +++G F LD++ FY+ FE LIPMF+IIG+WG E++ A+Y FF YTF GS+FML Sbjct: 119 EILLMGVFTILDLVGFYVLFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFXGSVFMLL 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A+ + T+ L + + +QY++++ FF SFAIKIP PFH WLP AHV+AP Sbjct: 179 AMFTLYSYAGTTDYQVLCCL-QIDKELQYFIFLGFFISFAIKIPKIPFHIWLPQAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGSV LAG++LK+GGYG IRF PL P AS++FAP+I LSL+AIIY SL + Q D+K Sbjct: 238 VAGSVLLAGVLLKLGGYGFIRFSWPLLPEASEFFAPLIQTLSLLAIIYGSLTTCRQVDLK 297 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 ++IAYSS+AHMG VT+ +FS G+ A++ ML+HGLVSSALF V +Y+R +TR + Sbjct: 298 RIIAYSSVAHMGLVTLSLFSHTIQGLVAAVYLMLAHGLVSSALFIAVTFLYERHYTRLVK 357 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 Y G+V MP + V+M+ +AN +P + FIGEFL I++ F+ S V LAS G+VLS Sbjct: 358 YYRGMVITMPLFGVLMLALILANASIPLSCNFIGEFLSILAAFEYSFIVGALASLGMVLS 417 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 A YS++LY +V FG+ + + +DL+ RE +++ + + GI+P+PI D Sbjct: 418 AGYSIYLYNRVCFGMPS-KYLHYPRDLNRREFYILFSLTFIIFLMGIFPLPIVD 470 >gi|63025104|ref|YP_232798.1| NADH dehydrogenase subunit 4 [Geodia neptuni] gi|37961466|gb|AAP59163.1| NADH dehydrogenase subunit 4 [Geodia neptuni] Length = 481 Score = 358 bits (920), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 204/465 (43%), Positives = 291/465 (62%), Gaps = 8/465 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L +V P +G+ IL R +AL S + ++ +W+ FD G FQ I Sbjct: 2 LELVALFPVMGILNILVIIREDDIRLK--KIALEWSLLTLTATILLWASFD-GEGQFQAI 58 Query: 66 EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 + + W+ S VDGIS+ ++LT LTP C+L S SI+ +E+++ LV+E ++ Sbjct: 59 KNFEWVP--GSALFAVDGISLFFLILTALLTPICVLISRNSIKSLIKEFLLCLLVIEILL 116 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVV 184 +G F LD++ FYI FE LIPM +IIG+WG E++ AAY FF YTF GS+FML AI Sbjct: 117 MGVFTVLDLVGFYILFEGVLIPMVLIIGIWGSREEKVQAAYYFFFYTFIGSVFMLLAIFF 176 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + +++ ++ ++ +QY+++I FF S AIKIP PFH WLP AHV+AP AGS Sbjct: 177 L-YDQVGTTDYQALCCQQYERELQYFIFIGFFLSLAIKIPKIPFHIWLPQAHVEAPVAGS 235 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 V LAGI+LK+GGYG IRF PL P AS+YFAP I LSL+AIIY SL + Q D+K+++A Sbjct: 236 VILAGILLKLGGYGFIRFSWPLLPEASEYFAPFIRILSLLAIIYGSLTTCRQVDLKRIVA 295 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+AHMG VT+ +FS G+ A+F ML+HGLVSSALF V +Y+R HTR + Y G Sbjct: 296 YSSVAHMGLVTLSLFSHTVQGLVAAVFLMLAHGLVSSALFIAVTFLYERHHTRLVRYYRG 355 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +V MP + + + +AN +P + F+GEF +++ F+ S V VLAS G VLSA YS Sbjct: 356 MVITMPLFGALTLALVLANASIPLSCNFVGEFFSLLAAFEYSYVVGVLASLGTVLSAGYS 415 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++LY +V FG + + +DL+ RE ++ + +L GI+P Sbjct: 416 IYLYNRVCFGFPS-KFIFYSRDLNRREFYILLILVILIYLMGIFP 459 >gi|78778010|ref|YP_394325.1| NADH dehydrogenase subunit M [Sulfurimonas denitrificans DSM 1251] gi|78498550|gb|ABB45090.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Sulfurimonas denitrificans DSM 1251] Length = 517 Score = 358 bits (920), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 205/488 (42%), Positives = 308/488 (63%), Gaps = 19/488 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLG--CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LSI+ F P L + LG + S + ++TI F ++++W FD S Q Sbjct: 6 LSILIFFPAL-------AGILGFVVNKNSIRSYGVAVATIEFGLAMWLWFAFDSTLSGMQ 58 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E + F +Y +GVDGIS+ +++L F T I S + ++ + +I L L+ Sbjct: 59 FMEQIALVPAFGINYIVGVDGISLFIIILAAFFTMIGIASLGE--MKDIKNLIITLLFLQ 116 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++G F++LD ++FY+F+E SL+PM IIG WGG RIYA+ KFFLYTF GS+ ML + Sbjct: 117 MTMVGVFVALDAIVFYLFWELSLVPMLYIIGAWGGPLRIYASVKFFLYTFAGSLVMLVGM 176 Query: 183 VVMCW------EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + M + + + +++D Y + P S Q W++IAFF FAIK+PMFPFHTWLP AH Sbjct: 177 LFMAYFYYQATGEWSFALLDWYRLI-LPESFQNWLFIAFFFGFAIKVPMFPFHTWLPYAH 235 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 QAPT GSV LA I+LKMG Y IRF LPLFP AS YF I L++I IIY ++V+ Q Sbjct: 236 GQAPTIGSVILAAILLKMGTYAFIRFSLPLFPDASVYFMYPIAVLAIIMIIYTAMVAYAQ 295 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 DIK+++AYSS++HMG + +G F+ G+ G++F M++HG+VS ALFF VGVIYDR HT Sbjct: 296 KDIKQVVAYSSVSHMGVIILGTFALNVEGITGSIFLMIAHGVVSGALFFLVGVIYDRRHT 355 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 + + +GGL MPRYA + + MA++GLP T F+GEFL ++ ++ S+ + +LA Sbjct: 356 KLMSEFGGLASVMPRYATIFGIMLMASVGLPLTINFVGEFLSLLGFYKQSHILTLLAGTA 415 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 +++ A+Y L Y+K+ FGV E+ + L D++ RE + P+ ++T++ GIYP PI + Sbjct: 416 IIVGAIYMLSAYKKMFFGVVTHEENRNLPDINKRELLALIPLTIITIWLGIYPKPILEPI 475 Query: 477 SVPLSSII 484 + + ++ Sbjct: 476 NKSVEGVV 483 >gi|323698253|ref|ZP_08110165.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio sp. ND132] gi|323458185|gb|EGB14050.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio desulfuricans ND132] Length = 510 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 191/436 (43%), Positives = 281/436 (64%), Gaps = 4/436 (0%) Query: 57 KGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 K + FQ +E W+ + Y+LG+DGISIL+V+LT + P C++ SW I + +E+ Sbjct: 53 KLNADFQFVEKIDWVHQWGLQYYLGIDGISILMVLLTIAVLPLCVMCSWTYIGKREKEFH 112 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L + S V+G F +LD++LFY+F+EA LIPM+++I VWGG +R YA+ KFFLYT GS Sbjct: 113 FCLLFMTSAVLGVFCALDLVLFYVFWEAMLIPMYLLIAVWGGDDRKYASLKFFLYTLAGS 172 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L AIV T SI DL M+ F F Q+W ++A +FAIK+PMFPFHTWLP A Sbjct: 173 TLLLAAIVAFRITGGTFSIPDLMQMN-FSFRFQFWAFLAMALAFAIKVPMFPFHTWLPAA 231 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAP+AGSV LA ++LKMG YG +RF LPL P AS+YFAP++ +S+ +I+Y +++ Sbjct: 232 HVQAPSAGSVILAAVLLKMGTYGFLRFCLPLTPAASEYFAPMMIAISIASILYGGAIALG 291 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q+DIKKL+AYSS+ HMG+VT+GIF + GVEGA+FQML+HG+V+ ALF +G +Y+R H Sbjct: 292 QSDIKKLVAYSSVGHMGFVTLGIFLFDQRGVEGALFQMLNHGIVTGALFMMIGAVYERSH 351 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 +R+I GL MP + + +A+ G PGT+GF+GE LV + FQ S + + Sbjct: 352 SREISKNLGLGKYMPGFMFFWGLMALASFGFPGTNGFVGEILVFIGAFQVSPFIGMFLVP 411 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G +L A Y + K+ +G K + +DL+ RE + AV ++ G+ P P + Sbjct: 412 GALLGAAYMFRVSLKMAWG--KPSSAKTWRDLNAREWIYLTIPAVFVLWIGLAPKPFFNI 469 Query: 476 FSVPLSSIIENYTLKT 491 ++ ++ ++ + Sbjct: 470 IDPSVNKLLNDFDKRK 485 >gi|317097474|ref|YP_004123690.1| NADH dehydrogenase subunit 4 [Plakina sp. DVL-2010] gi|308912634|gb|ADO51398.1| NADH dehydrogenase subunit 4 [Plakina sp. DVL-2010] Length = 488 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 211/452 (46%), Positives = 289/452 (63%), Gaps = 17/452 (3%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHW--------IDYFCSYHLGVDGISILLVVLTTFLTPFC 99 ++ +W FD G FQ ++ W I + VDGIS+ LT LTP C Sbjct: 42 TIVLWVTFD-GEGQFQALKIIEWTTPSMEGGIWSSGTVVFAVDGISVFFXXLTAILTPIC 100 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-S 158 IL SW SI+ +E ++ LVLE +++G FL LD+LLFYI FE LIPMF+IIGVWG Sbjct: 101 ILISWNSIKXLLKEXLLCLLVLEILLMGVFLILDLLLFYILFEGILIPMFLIIGVWGSRE 160 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS 218 E++ A+Y FF YT GS+ ML I V+ T+ L + K +Q W+++ FF S Sbjct: 161 EKVLASYYFFFYTLIGSVLMLLGIFVVYSNTGTTDYQTLCGL-KLNGEVQKWVFMGFFVS 219 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 AIKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PLFP AS+YFAP++ Sbjct: 220 LAIKIPKIPFHIWLPLAHVEAPVAGSVMLAGVLLKLGGYGFIRFSWPLFPEASEYFAPLV 279 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL+AIIYASL + Q D+K++IAYSS+AHMG VT+ IF+ G+ A+F ML+HG Sbjct: 280 QTLSLLAIIYASLTACRQADLKRIIAYSSVAHMGLVTLAIFTHTIQGLVSAIFLMLAHGF 339 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 VSSALF V ++Y+R HTR + Y G+ MP ++++M++ T+AN+ +P + F+GE L Sbjct: 340 VSSALFIIVTLLYERHHTRLVRYYRGVAITMPIFSIIMLLMTLANIAIPLSCNFVGELLS 399 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 +++ F+ S V VLAS G+VL A YSL+LY +V FG + + +DL+ RE ++P+ Sbjct: 400 LLAAFEYSFIVGVLASLGMVLGAAYSLYLYNRVCFG-NTSNFILFSRDLNRREFYALFPL 458 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSII--ENYT 488 L G+YP I DT SS+I E+YT Sbjct: 459 VFLVYLIGVYPSVIIDTVK---SSVIFQESYT 487 >gi|164421120|ref|YP_001648415.1| NADH dehydrogenase subunit 4 [Cinachyrella kuekenthali] gi|158938902|gb|ABW83831.1| NADH dehydrogenase subunit 4 [Cinachyrella kuekenthali] Length = 486 Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 209/475 (44%), Positives = 299/475 (62%), Gaps = 8/475 (1%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 +N L +V P +G IL + + +AL S + +LF+W+ FD G Sbjct: 7 LNPRMLELVILFPMMGTVNIL--TIMRDNAIRLKKIALEWSLLTLTATLFLWASFD-GEG 63 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ I+ + WI S VDGIS+ ++LT LTP C+L SW SI+ +E+++ L+ Sbjct: 64 QFQAIKKFEWIT--GSVPFAVDGISLFFLILTALLTPICVLISWNSIKFLIKEFLLCLLI 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFML 179 +E +++G F+ LD++ FYI FE LIPM +IIGVWG E++ A+Y FF YTF GS+FML Sbjct: 122 IEILLMGVFIILDLVGFYILFEGVLIPMVLIIGVWGLREEKVQASYYFFFYTFIGSVFML 181 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI + + T+ L + ++ +QY++++ FF S AIKIP PFH WLP AHV+A Sbjct: 182 LAIFFLYDQVGTTDYRTLCS-QQYEKKLQYFIFLGFFLSLAIKIPKIPFHIWLPQAHVEA 240 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGSV LAG++LK+GGYG IRF PL P AS+YF P I LSL+AIIY SL + Q D+ Sbjct: 241 PVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFGPFIQTLSLLAIIYGSLTTCRQVDL 300 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+++AYSS+AHMG VT+ +FS G+ A+F ML+HGLVSSALF V +Y+R HTR + Sbjct: 301 KRIVAYSSVAHMGLVTLSLFSHTVQGLVAAVFLMLAHGLVSSALFIAVTFLYERHHTRLV 360 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 Y G+V MP + +M+ +AN +P + F+GEF ++ F+ S V V+ASFG VL Sbjct: 361 RYYRGMVVTMPLFGTLMLTLVLANASIPLSCNFVGEFFSLLGAFEYSYVVGVIASFGTVL 420 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 SA YS++LY +V FG+ + + +DL+ RE ++ + VL GI+P+ D Sbjct: 421 SAGYSIYLYNRVCFGLPS-KFLCYPRDLNRREFYTLFTLVVLIYLMGIFPLLAID 474 >gi|94968323|ref|YP_590371.1| proton-translocating NADH-quinone oxidoreductase, chain M [Candidatus Koribacter versatilis Ellin345] gi|94550373|gb|ABF40297.1| NADH dehydrogenase subunit M [Candidatus Koribacter versatilis Ellin345] Length = 559 Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 208/494 (42%), Positives = 310/494 (62%), Gaps = 18/494 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSL----FVWSVFDKGRSS 61 LSIV F P G ++L + + +A + F+ SL + W+V + Sbjct: 7 LSIVLFTPLAGAILLLMVP--KENKNAIRWIANLAALAGFLVSLPLIPWFWAVKSEVTPY 64 Query: 62 FQMIE--YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 F+ E +WI Y LG+DGIS LL++LTT L ILSSW +I+ +EY F Sbjct: 65 FKFAEGSTNNWIPSIGAGYQLGIDGISFLLIILTTLLGSISILSSWTAIENRVKEYYAWF 124 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L++ ++G F++ D LF++F+EA L+PM+++IG+WGG ++YAA KFFLYT GS+ M Sbjct: 125 LLLQTGMLGVFMANDFFLFFVFWEAMLVPMYLLIGIWGGPRKLYAAIKFFLYTLAGSVLM 184 Query: 179 LFAIVVMCWEKKTS------SIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 L I+ + + T S+ LYA + +++ AFF FAIK+PMFPFHTW Sbjct: 185 LLGILFLYFHHHTVTGVYTFSLEALYATAPLITGKAAIFLFFAFFVGFAIKVPMFPFHTW 244 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS--QYFAPVIFFLSLIAIIYA 289 LP+AHV+APTAGSV LAG++LKMG YG IRF LP FP + ++ ++ LSLI I+Y Sbjct: 245 LPDAHVEAPTAGSVILAGVLLKMGTYGLIRFSLPFFPAVATIKWVQALLITLSLIGILYG 304 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 +LVS+VQ D+KKL+AYSS++H+G+ T+GIF + G+ G++ Q ++HG+ + ALF VG+ Sbjct: 305 ALVSLVQKDMKKLVAYSSVSHLGFCTLGIFVFTQMGIAGSVIQQINHGISTGALFLIVGI 364 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 +Y+R HTR+I YGG+ MP YA + ++ M++MGLP +GF+GE ++M+ F + T Sbjct: 365 LYERRHTREISEYGGISTVMPVYATIALIMFMSSMGLPLLNGFVGEMPIMMATFMVNKTW 424 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A+ A GVVL+A Y LWLY++V FG K ++L DL+ RE P+ +L + G+YP Sbjct: 425 AIWAIPGVVLAAAYLLWLYQRVFFGTVTNPKNEKLADLTPRELATFVPLVILALAIGLYP 484 Query: 470 VPIRDTFSVPLSSI 483 P+ P + + Sbjct: 485 QPLFKILDQPAAKL 498 >gi|268316807|ref|YP_003290526.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodothermus marinus DSM 4252] gi|262334341|gb|ACY48138.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodothermus marinus DSM 4252] Length = 534 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 201/491 (40%), Positives = 308/491 (62%), Gaps = 28/491 (5%) Query: 1 MNLPFL-SIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 MNLP+L SIV FLP +G ++L + R + AL +T+ F+ SL ++ +D Sbjct: 1 MNLPYLTSIVIFLPLVGALLMLPMRRVSAIRWT----ALATTTVTFLISLLLYVGYDPAG 56 Query: 60 SSFQMIEYYHWIDYFCSYHLGVD--------GISILLVVLTTFLTPFCILSSWKSIQENF 111 S Q ++D + G+D G+ +LL++LTT L P +LSSW I + Sbjct: 57 SPAQP----QFVDRITGWFPGLDIQYYVGIDGLGLLLILLTTLLGPIVVLSSWNYIDRHQ 112 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 + Y LVL++ + G F + D++LFYIFFE +LIPM+ IIG+WGG +RIYAA KF LYT Sbjct: 113 KGYYTLLLVLQTGMTGVFAAYDLILFYIFFELTLIPMYFIIGIWGGEDRIYAAVKFVLYT 172 Query: 172 FFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF-------PFSIQYWMWIAFFCSFAIKIP 224 GS+ ML I+ + + + ++ F P + Q W++ F +FAIK+P Sbjct: 173 LVGSLLMLVGILYLGFAAGDAVNGGVFTTDYFKLLAYNVPLAAQGWLFFVFALAFAIKVP 232 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 +FP HTWLP+AHVQAPT GSV LAG++LKMG YG +RF LP FP A+ +A + L+++ Sbjct: 233 LFPLHTWLPDAHVQAPTGGSVILAGVLLKMGTYGLVRFCLPFFPNAATDYALWLAVLAVV 292 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 I+Y +LVS VQ D KKL+AYSS++H+G+V +GIF+ ++GA+ QM++HGL + ALF Sbjct: 293 GIVYGALVSRVQADAKKLVAYSSVSHLGFVVLGIFAFTVEAMQGAIIQMINHGLSTGALF 352 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 VG++Y+R HTR + +GG+ MP +A ++ +A+ GLPG +GF+GEF++++ F+ Sbjct: 353 LLVGMLYERRHTRLMEEFGGIARVMPVFAFFLVFTALASAGLPGLNGFVGEFMILLGSFK 412 Query: 405 NS----NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 ++ + LA+ GV+L+A+Y LWL + +FG + E + L DL+ RE ++ P+AV Sbjct: 413 SALVGHPLLIALATSGVILAAVYLLWLLYRTLFGPIQKEVNRTLPDLNAREVLLLVPLAV 472 Query: 461 LTVFFGIYPVP 471 ++ G+ P P Sbjct: 473 FMLWIGVAPGP 483 >gi|164421041|ref|YP_001648671.1| NADH dehydrogenase subunit 4 [Plakortis angulospiculatus] gi|158939031|gb|ABW83951.1| NADH dehydrogenase subunit 4 [Plakortis angulospiculatus] Length = 491 Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 216/494 (43%), Positives = 306/494 (61%), Gaps = 17/494 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LSI+ FL G+ ++F + + ++T+ ++ +W FD G FQ + Sbjct: 2 LSIIFFLLLFGILHVMFIPRENQTQLKLTALQWSLTTLTA--TIVLWVTFD-GEGQFQGL 58 Query: 66 EYYHWIDYFC------SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + WI + VDGIS+ ++LT L P CIL SW SI+ +E+++ L Sbjct: 59 KIIEWIPTIVGIWSSGTVVFAVDGISVFFLILTAILIPICILISWNSIKFLLKEFLLCLL 118 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFM 178 VLE +++G FL LD+LLFYI FE LIPMF+IIGVWG E++ A+Y FF YT GS+ M Sbjct: 119 VLEILLMGVFLILDLLLFYILFEGILIPMFLIIGVWGSREEKVLASYYFFFYTLIGSVLM 178 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L I ++ T+ L + K +Q W+++ FF S AIKIP PFH WLP AHV+ Sbjct: 179 LLGIFMLYSNTGTTDYQTLCGL-KLNGDVQKWVFMGFFVSLAIKIPKIPFHIWLPLAHVE 237 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP AGSV LAG++LK+GGYG IRF PLFP AS+YFAP+I LSL AIIYASL + Q D Sbjct: 238 APVAGSVMLAGVLLKLGGYGFIRFSWPLFPEASEYFAPLIQTLSLFAIIYASLTTCRQVD 297 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 K++IAYSS+AHMG VT+GIF+ G+ A+F ML+HG VSSALF V ++Y+R HTR Sbjct: 298 FKRIIAYSSVAHMGLVTLGIFTHTIQGLVSAIFLMLAHGFVSSALFIIVTLLYERHHTRL 357 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + Y G+ MP ++++M++ +AN+ +P + F+GEFL +++ F+ S V LAS G++ Sbjct: 358 VKYYRGITITMPIFSIIMLLMILANIAVPLSCNFVGEFLSLLAAFEYSFIVGGLASLGII 417 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A YSL+LY +V FG S + +DL+ RE ++P+ L G+YP + DT Sbjct: 418 LGAAYSLYLYNRVCFGNSS-NFIFFSRDLNRREFYALFPLIFLVYLTGVYPSVLIDTIK- 475 Query: 479 PLSSII--ENYTLK 490 SS+I E +T + Sbjct: 476 --SSVIFQETHTYQ 487 >gi|116619263|ref|YP_821419.1| proton-translocating NADH-quinone oxidoreductase subunit M [Candidatus Solibacter usitatus Ellin6076] gi|116222425|gb|ABJ81134.1| proton-translocating NADH-quinone oxidoreductase, chain M [Candidatus Solibacter usitatus Ellin6076] Length = 518 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 192/455 (42%), Positives = 297/455 (65%), Gaps = 6/455 (1%) Query: 45 FIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSS 103 F SL + + FD+G S Q WI + + +G+SI LV+L+T LTP C+L S Sbjct: 42 FAASLGLLAWFDRGLSGEQFAIDVPWISSPNIHFAISANGVSIWLVLLSTLLTPLCVLVS 101 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYA 163 W SI + +E+ L+LE ++G FL+ D+ LFY+F+E +L+PM+ +IG+WG RIYA Sbjct: 102 WNSIHDRTKEFYAFLLLLEFGLVGVFLAQDLFLFYVFWEIALVPMYFMIGIWGHDRRIYA 161 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKT---SSIIDLYAMSK--FPFSIQYWMWIAFFCS 218 A KFFLYT GS+ ML AI+ + + +T +I+++ + + FP Q +++AFF + Sbjct: 162 AVKFFLYTMAGSVLMLAAIIYIYNKTQTFSYPAILEMLSNGRLSFPPGEQMLLFLAFFLA 221 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 FAIK+P+FP HTWLP+AHV+APTAGS+ LA +MLKMG YG + F LP+FP A++ AP I Sbjct: 222 FAIKVPLFPLHTWLPDAHVEAPTAGSIMLASVMLKMGTYGILHFCLPMFPSAARACAPWI 281 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 L++I IIY +LV+MVQ ++KKL+AYSS++H+G+V +GIF+ + G++GA++QML+HG+ Sbjct: 282 TVLAIIGIIYGALVAMVQPNMKKLVAYSSVSHLGFVVLGIFTFTQPGLDGAVYQMLNHGI 341 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 + ALF VG++Y+R H+ +I +YGG+ P +V ++ T+A++GLP + F+GEFLV Sbjct: 342 STGALFLVVGLLYERNHSLEINSYGGVATVAPWLSVAFLITTLASVGLPTLNNFVGEFLV 401 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 + + AV AS GV+LSA Y LW+Y++V +G + DL+LRE + P+ Sbjct: 402 LQGAAIANFPWAVWASIGVILSACYMLWMYQRVFYGEVNPHVREHTPDLNLREWAAILPL 461 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGY 493 + V+ G++ S + I++ + Y Sbjct: 462 IAMMVWMGVFSQSFLPPVSQNTARILKQTNVNVSY 496 >gi|6137793|ref|NP_009263.1| NADH dehydrogenase subunit 4 [Metridium senile] gi|3914174|sp|O47497|NU4M_METSE RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|913913|gb|AAB32499.1| NADH dehydrogenase complex subunit 4 [Metridium senile] gi|2920995|gb|AAC04640.1| NADH dehydrogenase subunit 4 [Metridium senile] Length = 491 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 202/445 (45%), Positives = 279/445 (62%), Gaps = 10/445 (2%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID------YFCSYHLGVDGISILLVV 90 AL S +L +W+ FD FQ I WI + L VDGIS+ ++ Sbjct: 37 ALEWSLATLTATLILWAAFDM-EGQFQTINQTEWIVPPALNFKWGPLFLAVDGISLFFLI 95 Query: 91 LTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 LT LTP CIL SW SI+ +E+++ L LE +++G F +LD+LLFYI FE LIPMF+ Sbjct: 96 LTALLTPICILISWNSIKFLLKEFLLCLLFLEVLLMGVFSALDLLLFYILFEGILIPMFL 155 Query: 151 IIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 +IGVWG E++ A+Y FF YTF GS+FML I + T+ L + + P S Q Sbjct: 156 LIGVWGSREEKVRASYYFFFYTFVGSVFMLLGIFQLYSSVGTTDYQALLNI-ELPISTQK 214 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 W++ FF S A+KIP PFH WLP AHV+AP +GSV LAGI+LK+GGYG +RF P+ P Sbjct: 215 WIFAGFFLSLAVKIPQVPFHIWLPQAHVEAPVSGSVILAGILLKLGGYGFLRFTWPILPA 274 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 A++YFAP + LS+IAIIY SL + Q D+K+LIAYSS+AHMG VT+G+F+ G+ A Sbjct: 275 ATEYFAPFVIMLSVIAIIYGSLTTCRQVDLKRLIAYSSVAHMGLVTLGLFTHTIEGLVAA 334 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F ML+HGLVSSALF V +Y+R HTR I Y G+ +MP + V +V T+ NM +P + Sbjct: 335 VFMMLAHGLVSSALFIAVTYLYERHHTRLIKYYRGITFSMPIFVSVFLVLTLTNMAIPLS 394 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 F+ EF +++ F+ + + VLA+ G+V SA YSL+LY +V FG S + +DL+ Sbjct: 395 CNFVAEFFSLLAAFEYNIVIGVLAATGMVWSAAYSLYLYNRVSFGASS-NYLLFTRDLNR 453 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRD 474 RE + P+ +L G+ P I D Sbjct: 454 RELIAISPLVILIFILGVLPSLIID 478 >gi|317097374|ref|YP_004123583.1| NADH dehydrogenase subunit 4 [Plakina monolopha] gi|308912588|gb|ADO51355.1| NADH dehydrogenase subunit 4 [Plakina monolopha] Length = 488 Score = 356 bits (913), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 210/452 (46%), Positives = 289/452 (63%), Gaps = 17/452 (3%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHW--------IDYFCSYHLGVDGISILLVVLTTFLTPFC 99 ++ +W FD G FQ ++ W I + VDGISI ++LT LTP C Sbjct: 42 TIVLWVTFD-GEGQFQALKIIEWTTPSMEGGIWSSGTVVFAVDGISIXFLILTAILTPIC 100 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-S 158 IL SW SI+ +E+++ LVLE +++G FL LD+LLFYI FE LIPMF+II VWG Sbjct: 101 ILISWNSIKFLLKEFLLCLLVLEILLMGVFLILDLLLFYILFEGXLIPMFLIIXVWGSRE 160 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS 218 E++ A+Y YT GS+ ML I V+ T+ L + K +Q W+++ FF S Sbjct: 161 EKVLASYYXXXYTLIGSVLMLLGIFVIYSNTGTTDYQTLCGL-KLNGEVQKWVFMGFFVS 219 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 AIKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PLFP AS+YFAP++ Sbjct: 220 LAIKIPKIPFHIWLPLAHVEAPVAGSVMLAGVLLKLGGYGFIRFSWPLFPEASEYFAPLV 279 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL+AIIYASL + Q D+K++IAYSS+AHMG VT+ IF+ G+ A+F ML+HG Sbjct: 280 QTLSLLAIIYASLTACRQADLKRIIAYSSVAHMGLVTLAIFTHTIQGLVSAIFLMLAHGF 339 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 VSSALF V ++Y+R HTR + Y G+ MP ++++M++ T+AN+ +P + F+GE L Sbjct: 340 VSSALFIIVTLLYERHHTRLVRYYRGVAITMPIFSIIMLLMTLANIAIPLSCNFVGELLS 399 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 +++ F+ S V VLAS G+VL A YSL+LY +V FG + + +DL+ RE ++P+ Sbjct: 400 LLAAFEYSFIVGVLASLGMVLGAAYSLYLYNRVCFG-NTSNFILFSRDLNRREFYALFPL 458 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSII--ENYT 488 L G+YP I DT SSII E+YT Sbjct: 459 VFLVYLIGVYPSVIIDTVK---SSIIFQESYT 487 >gi|114327372|ref|YP_744529.1| NADH-quinone oxidoreductase chain M [Granulibacter bethesdensis CGDNIH1] gi|114315546|gb|ABI61606.1| NADH-quinone oxidoreductase chain M [Granulibacter bethesdensis CGDNIH1] Length = 510 Score = 356 bits (913), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 197/479 (41%), Positives = 311/479 (64%), Gaps = 4/479 (0%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFF-GVALGISTINFIFSLFVWSVFDKGR 59 ++LP LSI+ LP G F++LF G + + G+ALG+S I F+ SL +W FD Sbjct: 5 LHLPILSILMGLPIFGSFLLLFLRGTGISQAATARGIALGVSLITFLLSLVLWIEFDPSM 64 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q E +W+ F SYHLGVDG S+LL++LTT LTP IL++W+ I E YM+A Sbjct: 65 TGLQFEERANWMPGFGVSYHLGVDGFSLLLLLLTTLLTPISILAAWRVIHERVSHYMLAV 124 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L++ +IG F++ D ++FYI +EA+L+P ++IG+WGG R +AA KFFL TF GS + Sbjct: 125 LMLQAAMIGVFVAQDFVVFYISYEATLVPGSLLIGLWGGPRRAFAAMKFFLLTF-GSSLL 183 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + +++ W S+ +D+ ++FP + Q +++AF +F K+P++P H+WLP+A+ + Sbjct: 184 MLLVLLYAWYVTGSTDMDVLLHTRFPMTAQSLIFLAFVLAFGTKLPIWPLHSWLPDAYGE 243 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP + L+G+M K G YG +RF + + P A++++APV+ L ++ +IYA++++ QTD Sbjct: 244 APAPATALLSGVMAKAGAYGLLRFAIGMAPDAARHYAPVMMILGVVGVIYAAIIACAQTD 303 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK++AYSS +HMG V +G+FS G++GA+FQM+SHG++ + LFFCV ++ R +RD Sbjct: 304 MKKMVAYSSFSHMGLVVVGLFSLTTEGIDGALFQMVSHGIIIAGLFFCVSMVSFRAGSRD 363 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 G+V+ PR A + M F+MA++GLPGT GF+GE LVI + +A+LA +V Sbjct: 364 FAKVTGVVNYAPRLAALAMAFSMASIGLPGTGGFVGEVLVIFGALHVNVWLALLAGTSMV 423 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 L A+Y L Y +V+FG V L D++ E ++ P+ VLT++ G YP F+ Sbjct: 424 LGAIYMLSFYWRVMFG-KLSGAVSVLHDMTRLEMAVLVPLVVLTLWMGFYPTSFTRVFN 481 >gi|65329289|gb|AAY42128.1| Nqo13 [Rhodothermus marinus] Length = 534 Score = 356 bits (913), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 201/491 (40%), Positives = 307/491 (62%), Gaps = 28/491 (5%) Query: 1 MNLPFL-SIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 MNLP+L SIV FLP +G ++L + R + AL +T+ F+ SL ++ +D Sbjct: 1 MNLPYLTSIVIFLPLVGALLMLPMRRVSAIRWT----ALATTTVTFLISLLLYVGYDPAG 56 Query: 60 SSFQMIEYYHWIDYFCSYHLGVD--------GISILLVVLTTFLTPFCILSSWKSIQENF 111 S Q ++D + G+D G+ +LL++LTT L P +LSSW I + Sbjct: 57 SPAQP----QFVDRIAGWFPGLDIQYYVGIDGLGLLLILLTTLLGPIVVLSSWNYIDRHQ 112 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 + Y LVL++ + G F + D++LFYIFFE +LIPM+ IIG+WGG +RIYAA KF LYT Sbjct: 113 KGYYTLLLVLQTGMTGVFAAYDLILFYIFFELTLIPMYFIIGIWGGEDRIYAAVKFVLYT 172 Query: 172 FFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF-------PFSIQYWMWIAFFCSFAIKIP 224 GS+ ML I+ + + + ++ F P + Q W++ F +FAIK+P Sbjct: 173 LVGSLLMLVGILYLGFAAGDAVNGGVFTTDYFKLLAYNVPLAAQGWLFFVFALAFAIKVP 232 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 +FP HTWLP+AHVQAPT GSV LAG++LKMG YG +RF LP FP A+ +A + L++ Sbjct: 233 LFPLHTWLPDAHVQAPTGGSVILAGVLLKMGTYGLVRFCLPFFPNAATDYALWLAVLAVA 292 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 I+Y +LVS VQ D KKL+AYSS++H+G+V +GIF+ ++GA+ QM++HGL + ALF Sbjct: 293 GIVYGALVSRVQADAKKLVAYSSVSHLGFVVLGIFAFTVEAMQGAIIQMINHGLSTGALF 352 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 VG++Y+R HTR + +GG+ MP +A ++ +A+ GLPG +GF+GEF++++ F+ Sbjct: 353 LLVGMLYERRHTRLMEEFGGIARVMPVFAFFLVFTALASAGLPGLNGFVGEFMILLGSFK 412 Query: 405 NS----NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 ++ + LA+ GV+L+A+Y LWL + +FG + E + L DL+ RE ++ P+AV Sbjct: 413 SALVGHPLLIALATSGVILAAVYLLWLLYRTLFGPIQKEVNRTLPDLNAREVLLLVPLAV 472 Query: 461 LTVFFGIYPVP 471 ++ G+ P P Sbjct: 473 FMLWIGVAPGP 483 >gi|83815949|ref|YP_445570.1| NADH dehydrogenase i, m subunit [Salinibacter ruber DSM 13855] gi|83757343|gb|ABC45456.1| NADH dehydrogenase i, m subunit [Salinibacter ruber DSM 13855] Length = 545 Score = 356 bits (913), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 211/494 (42%), Positives = 312/494 (63%), Gaps = 23/494 (4%) Query: 1 MNLPFL-SIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 MN+P+L S+V FLP G + LF R + AL +T+ F+ S+ ++ +D Sbjct: 2 MNIPYLTSLVVFLPAAGALLTLFLRRASAIRWT----ALATTTVTFVLSIGLFVGYDPSV 57 Query: 60 SSF---QMIEYYH-WID--YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 S+ Q+ + + W+ Y Y +GVDG+S+LLV+LTT L P +LSSW I E + Sbjct: 58 STALGPQLADVWAGWLPDGYDVKYFVGVDGLSLLLVMLTTLLGPIVVLSSWTYIGEKHKG 117 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L+L++ + G F S D+LLFYIFFE +LIPM+ IIG+WGG ERIYAA KF +YT Sbjct: 118 YYALLLLLQTGITGVFTSFDLLLFYIFFELTLIPMYFIIGIWGGKERIYAAVKFVIYTLV 177 Query: 174 GSIFMLFAIVVMCWEKKTSS-----IIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMF 226 GS+ ML I+ + + + D Y + ++ P ++Q W++ F SFAIK+P+F Sbjct: 178 GSLLMLVGILYLGYAAGDAVNNGVFTTDWYTLLEYNIPLAVQGWLFAVFAFSFAIKVPLF 237 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P HTWLP+AHVQAPT GSV LAG++LKMG YG +RF LPLFP +Q +A + +++I I Sbjct: 238 PLHTWLPDAHVQAPTGGSVILAGVLLKMGTYGLLRFCLPLFPNVAQSYAGLFAVIAIIGI 297 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 IY +LV+ VQ D K L+AYSSI+H+G+V +G+F+ ++GAM QM++HGL + ALF Sbjct: 298 IYGALVARVQDDAKSLVAYSSISHLGFVVLGLFAFTTEAMQGAMIQMVNHGLSTGALFLL 357 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ-- 404 VG++Y+R HTR + YGGL ++P +M++ +A+ GLPG +GF+GEFL+++ F+ Sbjct: 358 VGMLYERRHTRLMDDYGGLATSVPVLTTLMVISVLASAGLPGLNGFVGEFLILLGSFKST 417 Query: 405 --NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 +S + A+ GV+L+A+Y L + + FG Q+ DL+ RE ++ P+ VL Sbjct: 418 VIDSPVLIAFATTGVILAAMYLLHMVYRTFFGELTDAANAQMADLNAREFGLMVPLIVLM 477 Query: 463 VFFGIYPVP-IRDT 475 G YP P +R T Sbjct: 478 FVLGFYPGPFLRQT 491 >gi|301353218|ref|YP_003795215.1| NADH dehydrogenase subunit 4 [Proteromonas lacertae] gi|290573166|gb|ADD46353.1| NADH dehydrogenase subunit 4 [Proteromonas lacertae] Length = 494 Score = 355 bits (912), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 188/441 (42%), Positives = 287/441 (65%), Gaps = 7/441 (1%) Query: 43 INFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCIL 101 I FI ++ + ++K FQ + ++W++Y Y G D S++ +VL+ F+ C L Sbjct: 44 ITFIEAIILLIFYNKLLCLFQYVFVFNWLNYTQLYFTFGFDSFSLIFIVLSAFINCCCFL 103 Query: 102 SSWKS-IQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER 160 + W + ++ + + +FL+ E ++ F +D+LLFY+FFE+ LI MF+IIG++G ER Sbjct: 104 ACWNNYLKGESKLFYQSFLIQEVILHLVFSVMDILLFYVFFESVLITMFIIIGIFGSRER 163 Query: 161 -IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF 219 + A+Y FF+YT GS+ M+ +I+ + + T+ + L + F ++Q +W+ FF SF Sbjct: 164 KVRASYMFFIYTLLGSVLMMLSILFIYFYVGTTDYLSLLTV-DFSHNLQKILWLTFFFSF 222 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 A+K+PM PFH WLP AHV+APT GSV LAGI+LK+G YG +RF LPLFP AS YF P+++ Sbjct: 223 AVKVPMLPFHIWLPEAHVEAPTVGSVILAGILLKLGTYGFLRFSLPLFPYASIYFTPLVY 282 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 +++I +IY+SL ++ QTDIK+++AYSSIAHM + IG+FS +G+EG++ QM+SHGLV Sbjct: 283 TIAIIGLIYSSLTAIRQTDIKRIVAYSSIAHMNLIMIGLFSLEFAGIEGSIVQMISHGLV 342 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 S LF VGV+YDR HTR I YGG+V MP + + +VFT+ANM P +S F+GEFL+ Sbjct: 343 SGGLFLLVGVLYDRYHTRLIKYYGGVVQVMPIFVTIFLVFTLANMAFPTSSSFVGEFLIF 402 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIA 459 M F ++ + A+ G++L +YSLWL+ +V +G + LKD+ E + + Sbjct: 403 MGTFNSNMIIGFFATTGMLLGGVYSLWLFNRVCYGNINLHYIHFLKDMYSHEFFIFIILL 462 Query: 460 VLTVFFGIYPV---PIRDTFS 477 + + GIYPV I D FS Sbjct: 463 FVIMLIGIYPVFLTKILDIFS 483 >gi|317097077|ref|YP_004123216.1| NADH dehydrogenase subunit 4 [Plakortis halichondrioides] gi|308912710|gb|ADO51469.1| NADH dehydrogenase subunit 4 [Plakortis halichondrioides] Length = 489 Score = 355 bits (912), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 211/477 (44%), Positives = 298/477 (62%), Gaps = 12/477 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LSI+ FL G ++F + + ++T+ ++ +W FD G FQ + Sbjct: 2 LSIIFFLLLFGTLHVMFIPRENHLQLKLTALQWSLATLTA--TVVLWVTFD-GEGQFQGL 58 Query: 66 EYYHWIDYFC------SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + WI + VDGIS+ ++LT L P CIL SW SI+ +E+++ L Sbjct: 59 KIIEWIPTIVGIWSSGTVVFAVDGISVXFLILTAILIPICILISWNSIKFLLKEFLLCLL 118 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFM 178 VLE +++G FL LD+LLFYI FE LIPMF+IIGVWG E++ A+Y FF YT GS+ M Sbjct: 119 VLEILLMGVFLILDLLLFYILFEGILIPMFLIIGVWGSREEKVIASYYFFFYTLIGSVLM 178 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L I ++ T+ L + K +Q W+++ FF S AIKIP PFH WLP AHV+ Sbjct: 179 LLGIFMLYSNTGTTDYQTLCGL-KLNGDVQKWVFMGFFVSLAIKIPKIPFHIWLPLAHVE 237 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP AGSV LAG++LK+GGYG IRF PLFP AS+YFAP+I LSL AIIYASL + Q D Sbjct: 238 APVAGSVMLAGVLLKLGGYGFIRFSWPLFPEASEYFAPLIQTLSLFAIIYASLTTCRQVD 297 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 K++IAYSS+AHMG VT+GIF+ G+ A+F ML+HG VSSALF V ++Y+R HTR Sbjct: 298 FKRIIAYSSVAHMGLVTLGIFTHTIQGLVSAIFLMLAHGFVSSALFIIVTLLYERHHTRL 357 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + Y G+ MP +++VM++ +AN+ +P + F+GE L +++ F+ S V +LAS G++ Sbjct: 358 VKYYRGVTITMPIFSIVMLLMILANIAVPLSCNFVGELLSLLAAFEYSFIVGMLASLGMI 417 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 L A YSL+LY +V FG + + +DL+ RE ++P+ L F G+YP + DT Sbjct: 418 LGAAYSLYLYNRVCFG-NTSNFLFFSRDLNRREFYALFPLVFLVYFIGVYPSILIDT 473 >gi|313681406|ref|YP_004059144.1| NADH dehydrogenase subunit m [Sulfuricurvum kujiense DSM 16994] gi|313154266|gb|ADR32944.1| NADH dehydrogenase subunit M [Sulfuricurvum kujiense DSM 16994] Length = 515 Score = 355 bits (912), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 195/463 (42%), Positives = 294/463 (63%), Gaps = 10/463 (2%) Query: 30 RRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILL 88 + S + ++ I F+ SL++W +D S Q +E I F +Y LGVDGIS+ + Sbjct: 25 KDSMRAYGIAVAFIEFVLSLWLWYAYDPMISGMQFMESMPLIPAFGINYLLGVDGISLFI 84 Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 ++L+TF T I S + + ++ +I L LE ++G F +LD ++FY+F+E SL+PM Sbjct: 85 IILSTFFTLIGIASLTE--KRRIKDLIITLLFLEMTMVGVFAALDAIVFYVFWELSLVPM 142 Query: 149 FVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW------EKKTSSIIDLYAMSK 202 IIG WGG RIYA+ KFFLYTF GS+ ML ++ M + + + SI++ Y + Sbjct: 143 LYIIGAWGGPLRIYASIKFFLYTFTGSLVMLVGMLFMAYFYYQATGQWSFSILEWYRL-I 201 Query: 203 FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRF 262 P + Q W++ AFF FAIK+PMFPFHTWLP AH QAPT GSV LA I+LKMG Y +RF Sbjct: 202 LPENFQLWLFAAFFLGFAIKVPMFPFHTWLPYAHGQAPTIGSVILAAILLKMGTYAFVRF 261 Query: 263 LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGM 322 LPLFP AS +F I +++I IIY ++V+ Q DIK+++AYSS++HMG + +G F+ Sbjct: 262 SLPLFPDASVFFMFPIAIIAIIMIIYTAMVAYAQEDIKQVVAYSSVSHMGVIILGTFALN 321 Query: 323 KSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMA 382 GV G++F ML+HG+VS ALF VGVIYDR HT+ + +GGL MPRYA + + MA Sbjct: 322 VEGVSGSVFLMLAHGVVSGALFLLVGVIYDRRHTKLMSEFGGLASVMPRYATIFGIMMMA 381 Query: 383 NMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ 442 ++GLP T F+GEFL ++ ++ S+ + + A +++ A+Y L Y+K FG E + Sbjct: 382 SVGLPLTINFVGEFLSLLGFYKQSHMLTLTAGVAIIVGAIYMLSAYKKAFFGPVTNEANR 441 Query: 443 QLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 LKD++ E + P+ ++ ++ G+YP P+ + + + S+I+ Sbjct: 442 HLKDVNRTELLGLIPLVIVAIWLGVYPKPVLEPINNSVESVIQ 484 >gi|148262397|ref|YP_001229103.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter uraniireducens Rf4] gi|146395897|gb|ABQ24530.1| NADH dehydrogenase subunit M [Geobacter uraniireducens Rf4] Length = 493 Score = 355 bits (912), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 206/495 (41%), Positives = 313/495 (63%), Gaps = 16/495 (3%) Query: 2 NLPFLSIVTFLPFLGVFVIL-FSSYLGCGRRSFFGVALGISTINFIFS--LFVWSVFDKG 58 + P L+I+TFLP +G ++ F R +ALGI + + L+V + Sbjct: 4 DYPILTILTFLPLVGCLLLAPFRKRPEVVRP----IALGIGLLELALASWLYVTATSATT 59 Query: 59 R-SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 R SF ++E WI+ F Y LG+DGIS+L+V+LT F+T ++ SW+SI+E + + Sbjct: 60 RLRSFFLLEDLPWIERFGIRYTLGLDGISLLMVILTAFITLVAMIVSWQSIKERVALHYL 119 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LV+E+ ++G FLSLD+ LFY+F+E LIPMF +IG+WG RIY+A KFFLYT GS+ Sbjct: 120 LILVMETGIMGVFLSLDLFLFYLFWEVMLIPMFFLIGIWGHGRRIYSAVKFFLYTLAGSL 179 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS-----KFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 ML AI+ + S +A+S + + W++ AF +FAIK+P+FP HTW Sbjct: 180 LMLLAIIGLYLIHGAQSGTYTFALSSLLHTRIAPDMGCWLFAAFLLAFAIKVPLFPVHTW 239 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH APTAGSV LAG++LK G YG IRF PLFP A++ P+IF L++I IIY S Sbjct: 240 LPDAHTDAPTAGSVILAGLLLKTGAYGLIRFGYPLFPAAAKAATPIIFTLAVIGIIYGSW 299 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ Q D+K+L+AYSS+ HMG+V +GI + + GA+ QM++HG+ + ALF VG++ Sbjct: 300 IAYAQKDMKRLVAYSSVGHMGFVALGIAAWTPVALSGAVLQMVNHGVTTGALFALVGMLD 359 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R TR+I AYGGL +P ++ ++F MA+ GLPG + F+GEFLV+ F+ + V Sbjct: 360 ERTDTREIAAYGGLWGKVPVFSFFFLLFAMASAGLPGLNNFVGEFLVLTGSFRVTPLAVV 419 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 A G+VLS +Y++ L ++++F + + L DLSLRE ++ +A++ V+ GI+P P Sbjct: 420 FAFSGIVLSLVYTIRLVQELLF--VEERQTLALADLSLREGGLLLVLALIAVYLGIHPAP 477 Query: 472 IRDTFSVPLSSIIEN 486 + + VP++ + N Sbjct: 478 LLELIKVPVTLLTGN 492 >gi|288819085|ref|YP_003433433.1| NADH dehydrogenase I chain M [Hydrogenobacter thermophilus TK-6] gi|288788485|dbj|BAI70232.1| NADH dehydrogenase I chain M [Hydrogenobacter thermophilus TK-6] gi|308752668|gb|ADO46151.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hydrogenobacter thermophilus TK-6] Length = 488 Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 202/479 (42%), Positives = 295/479 (61%), Gaps = 20/479 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGRSSFQ 63 LS+ FLP ++L RR + + S I + +L ++ FD + FQ Sbjct: 2 LSVAIFLPLFSALLVL------VLRREKLSKIISVVSSGIVLLIALMLFLGFDWNKPGFQ 55 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Y WI YH+GVDG+ I L+++T + + SWK I++ Y FL+LE Sbjct: 56 YEAKYEWIPTLGIYYHIGVDGMGISLILMTALMFFASFVWSWK-IEDRPNLYHALFLMLE 114 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + +G F +LD+ LFYIF+E LIPM+ IIG+WG ++YAA KFF+YTFFGS+F+L I Sbjct: 115 TACLGVFSALDLFLFYIFWEGMLIPMYFIIGLWGHERKVYAANKFFVYTFFGSMFLLLGI 174 Query: 183 V-VMCWEKKTSSIIDL-YAMSK---FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ++ + T+ I Y K +P +Q ++ F FA+KIPM+P HTWLP+AHV Sbjct: 175 ASIIAYAYITTGQISFNYLFHKNLSYPIWLQLLAFLLFGVGFAVKIPMWPVHTWLPDAHV 234 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LA ++LKMG YG +R+ LPLFP AS+Y+ P+IFFLSL+AIIY +++++ QT Sbjct: 235 EAPTAGSVILAAVLLKMGTYGFVRYSLPLFPEASKYYIPLIFFLSLVAIIYTAMMAIAQT 294 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 IK+LIAYSSI+HMG VT+G F+ + + GA++ M++HGL S+ALF G IYDR+H+ Sbjct: 295 HIKRLIAYSSISHMGIVTLGTFALDVNALNGAIYMMIAHGLSSAALFMSAGFIYDRIHSY 354 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 + GGL +P+ +V+ M+ +A +G PG +GF+ EFLV + F+N A +A G+ Sbjct: 355 HMDDLGGLARYLPKLSVLFMISGLAGIGFPGLAGFVAEFLVFLGTFKNYPIWAFIAGVGM 414 Query: 418 VLSALYSLWLYRKVVFGVS-----KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 VLSA Y L++Y+KV+F + EK + LKD+ I G+YP+P Sbjct: 415 VLSAAYFLYMYKKVIFEEETVPEQRLEKWKHLKDIETHHFLPFLLILASAFLLGLYPLP 473 >gi|294507453|ref|YP_003571511.1| NADH dehydrogenase I chain M [Salinibacter ruber M8] gi|294343781|emb|CBH24559.1| NADH dehydrogenase I chain M [Salinibacter ruber M8] Length = 544 Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 210/494 (42%), Positives = 312/494 (63%), Gaps = 23/494 (4%) Query: 1 MNLPFL-SIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 M++P+L S+V FLP G + LF R + AL +T+ F+ S+ ++ +D Sbjct: 1 MDIPYLTSLVVFLPAAGALLTLFLRRASAIRWT----ALATTTVTFVLSIGLFVGYDPSV 56 Query: 60 SSF---QMIEYYH-WID--YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 S+ Q+ + + W+ Y Y +GVDG+S+LLV+LTT L P +LSSW I E + Sbjct: 57 STALGPQLADVWAGWLPDGYDVKYFVGVDGLSLLLVMLTTLLGPIVVLSSWTYIGEKHKG 116 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L+L++ + G F S D+LLFYIFFE +LIPM+ IIG+WGG ERIYAA KF +YT Sbjct: 117 YYALLLLLQTGITGVFTSFDLLLFYIFFELTLIPMYFIIGIWGGKERIYAAVKFVIYTLV 176 Query: 174 GSIFMLFAIVVMCWEKKTSS-----IIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMF 226 GS+ ML I+ + + + D Y + ++ P ++Q W++ F SFAIK+P+F Sbjct: 177 GSLLMLVGILYLGYAAGDAVNNGVFTTDWYTLLEYNIPLAVQGWLFAVFAFSFAIKVPLF 236 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P HTWLP+AHVQAPT GSV LAG++LKMG YG +RF LPLFP +Q +A + +++I I Sbjct: 237 PLHTWLPDAHVQAPTGGSVILAGVLLKMGTYGLLRFCLPLFPNVAQSYAGLFAVIAIIGI 296 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 IY +LV+ VQ D K L+AYSSI+H+G+V +G+F+ ++GAM QM++HGL + ALF Sbjct: 297 IYGALVARVQDDAKSLVAYSSISHLGFVVLGLFAFTTEAMQGAMIQMVNHGLSTGALFLL 356 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ-- 404 VG++Y+R HTR + YGGL ++P +M++ +A+ GLPG +GF+GEFL+++ F+ Sbjct: 357 VGMLYERRHTRLMDDYGGLATSVPVLTTLMVISVLASAGLPGLNGFVGEFLILLGSFKST 416 Query: 405 --NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 +S + A+ GV+L+A+Y L + + FG Q+ DL+ RE ++ P+ VL Sbjct: 417 VIDSPVLIAFATTGVILAAMYLLHMVYRTFFGELTDAANAQMADLNAREFGLMVPLIVLM 476 Query: 463 VFFGIYPVP-IRDT 475 G YP P +R T Sbjct: 477 FVLGFYPGPFLRQT 490 >gi|269926637|ref|YP_003323260.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermobaculum terrenum ATCC BAA-798] gi|269790297|gb|ACZ42438.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermobaculum terrenum ATCC BAA-798] Length = 511 Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 208/511 (40%), Positives = 313/511 (61%), Gaps = 20/511 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + +P L++ +P IL + G + + +A+ S +N + + + F G Sbjct: 8 LGMPILTLTLLVPLASA--ILAALVPGDRKNTIRWIAVIGSGVNLMLAAIALASFRFGTD 65 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q++E + W Y+LG+DGIS+LL LT L+ I+ S+ I +EY +A L Sbjct: 66 QIQLVERWIWAPSLNLQYYLGIDGISVLLYGLTALLSFIAIVYSFGVIDYRIKEYYVALL 125 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VLE+ ++G F++LD+LLFY+FFE +LIPM ++IGVWG ++Y+A KFFLYT GS+ ML Sbjct: 126 VLETGMLGVFVALDLLLFYVFFELTLIPMALLIGVWGHGRKLYSAVKFFLYTLAGSLIML 185 Query: 180 FAIVVMCWEKKTSSI--------IDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 AI + TSSI +DL ++ + ++ Q WM+ FF +FAIK+P+FPFHT Sbjct: 186 AAIASIY--VHTSSIPNGPTLNYVDLLRIAPNWSYAWQVWMFWGFFFAFAIKVPLFPFHT 243 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AHV APTAGS+ LAG++LKMGGYG +R+LLPL P AS+ A + LS+IAI+Y + Sbjct: 244 WLPDAHVDAPTAGSILLAGVLLKMGGYGFLRWLLPLAPEASRDLAVIPITLSVIAILYGA 303 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 LV++VQ D+KKL+AYSS+A MG+V +GIF G +GA+ QM+SHG +S ALF VGVI Sbjct: 304 LVTLVQRDLKKLVAYSSVASMGFVVLGIFIFNLHGAQGAIVQMVSHGFISGALFLGVGVI 363 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+RLHTR+I GGL M +A + ++ ++AN+GLPG S F+GE LV + + +A Sbjct: 364 YERLHTREIAKLGGLATLMGPFASLWVMLSLANLGLPGFSAFVGEVLVTLGTWLYKPWLA 423 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF---FGI 467 ++LSA Y LW+ + VF + K E L +++ + + P+ VL F G+ Sbjct: 424 FPVYAYIILSAAYMLWMVAR-VFYLGKPESKVSLPPMNIYQEAL--PLVVLVGFSFVLGV 480 Query: 468 YPVPIRDTFSVPLSSIIENYTLKTGYSDSVK 498 + P L +++ + + T S ++ Sbjct: 481 WATPFLRATEPSLVTLLGHLGVSTAASIGIR 511 >gi|164421136|ref|YP_001648581.1| NADH dehydrogenase subunit 4 [Ectyoplasia ferox] gi|158668127|gb|ABW76587.1| NADH dehydrogenase subunit 4 [Ectyoplasia ferox] Length = 481 Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 202/468 (43%), Positives = 296/468 (63%), Gaps = 10/468 (2%) Query: 12 LPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI 71 LP +G+ +L S R +AL S + ++ +W FD G+ FQ + W+ Sbjct: 8 LPLIGICHLLIISKEEIIRLK--KIALEWSLLILTATIVLWITFD-GQGQFQSSKTIEWM 64 Query: 72 ----DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 VDGISI ++LT LT CIL SW+SI+ +E+++ L +E ++IG Sbjct: 65 FTIEPKVSPIFFAVDGISIFFLILTALLTSICILISWRSIKFLIKEFLLCLLAIEFLLIG 124 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 F LD++ FY+ FE LIPMF+IIG+WG E+++A+Y FF +TF GS+FML AI ++ Sbjct: 125 VFSVLDLIGFYVLFEGILIPMFLIIGIWGTREEKVWASYYFFFFTFIGSVFMLLAIFLLY 184 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T+ L +S ++QY++++ FF S AIKIP PFH WLP AHV+AP AGSV Sbjct: 185 SYVGTTDYQTLCCIS-IDKNLQYFIFLGFFFSLAIKIPKIPFHIWLPQAHVEAPVAGSVI 243 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAG++LK+GGYG IRF PL A+++F+P+IF LSL+AIIY SL + Q D+K++IAYS Sbjct: 244 LAGVLLKLGGYGFIRFSWPLLSEAAEFFSPLIFTLSLLAIIYGSLTTCRQVDLKRIIAYS 303 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+AHMG VT+G+F+ +G+ A+F ML+HGLVSSALF V +Y+R TR + Y G+ Sbjct: 304 SVAHMGLVTLGVFTHTMTGIVAAIFLMLAHGLVSSALFIIVTFLYERFSTRLVKYYRGMS 363 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP ++ +M++ +AN +P + F+GEF +++ F S V VLAS G++LSA YS++ Sbjct: 364 ITMPLFSFLMLLLILANSSIPLSCNFVGEFFSLIAAFNYSYLVGVLASLGIILSASYSIY 423 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 LY +V FGV + +DL+ RE ++P+ +L GI+P I D Sbjct: 424 LYNRVCFGVPS-NYLYFPRDLNRREFYSLFPLVLLIFLIGIFPFIIID 470 >gi|58584879|ref|YP_198452.1| NADH:ubiquinone oxidoreductase chain M [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419195|gb|AAW71210.1| NADH:ubiquinone oxidoreductase chain M [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 480 Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 201/412 (48%), Positives = 275/412 (66%), Gaps = 6/412 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 ++L S + F+ S+ V FD + FQ + Y + +GVDGIS+L ++LTTFL Sbjct: 32 ISLLFSVLPFLLSIVVCIKFDYNNTDFQFVSYP-----IKNAGIGVDGISLLFLLLTTFL 86 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 C+L + K + M FL+LE V+G F+SL + FY+FFEA L+P+F IIGVW Sbjct: 87 FVICMLYNCKMSYTTLKSCMALFLLLEGFVVGFFISLSAISFYVFFEAVLVPIFFIIGVW 146 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM-SKFPFSIQYWMWIA 214 GG +RIYAA+K FLYT S+ L +V + T I L + +Q +WIA Sbjct: 147 GGKQRIYAAFKLFLYTLVSSLLFLLGLVYIHNIFGTFDIRKLATLVPSLDPEVQSLLWIA 206 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF SFAIK+PM PFHTWLP+AHVQ+PT+GSV LAG+++KMGGYG +RF +P+ P AS +F Sbjct: 207 FFASFAIKVPMVPFHTWLPDAHVQSPTSGSVVLAGLLIKMGGYGFLRFSIPMLPQASFHF 266 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 A I LS IA+IYASLV+ Q DIKKLIAYSSIAHMG VT G+FS + GV GA+FQM+ Sbjct: 267 ANFIIVLSAIAVIYASLVAFAQDDIKKLIAYSSIAHMGIVTAGLFSFCEEGVLGAIFQMI 326 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGL+SSALF CVG++Y R T I Y G+V+ MP++ + ++F+M+++GLPGTSGFIG Sbjct: 327 SHGLISSALFLCVGMLYTRTGTLKISKYFGIVNTMPKFGFMFILFSMSSVGLPGTSGFIG 386 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD 446 EFL ++ +F++ + G VLSA+Y L L ++ ++GVS + + D Sbjct: 387 EFLAMVGIFKSIGFFTGFIALGTVLSAVYMLNLCKQTIWGVSYSKLLNNRLD 438 >gi|164420962|ref|YP_001648529.1| NADH dehydrogenase subunit 4 [Callyspongia plicifera] gi|158668101|gb|ABW76563.1| NADH dehydrogenase subunit 4 [Callyspongia plicifera] Length = 480 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 211/475 (44%), Positives = 297/475 (62%), Gaps = 10/475 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L +V +P G ++ + GR VAL S + ++ + + FD G FQ+I Sbjct: 2 LELVFMIPLFGGIALILTPRDNSGRLK--KVALEWSLLTLTATILLGASFD-GDGQFQVI 58 Query: 66 EYYHWID----YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 WI F VDGISI ++LT LT CIL SW SI+ +E+++ L++ Sbjct: 59 RKIEWIPGLEPVFGPVVFAVDGISIFFLILTALLTSICILISWNSIRFLIKEFLLCLLLI 118 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLF 180 E +++G F LD++ FYI FE L+PMF+IIG+WG E++ A+Y FF YTF GS+FML Sbjct: 119 EILLMGVFTVLDLVGFYILFEGILVPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLL 178 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 AI + T+ L + + +Q ++++ FF S AIKIP PFH WLP AHV+AP Sbjct: 179 AIFTLYSYAGTTDYQALCCL-QIEGGLQCFIFLGFFLSLAIKIPKIPFHIWLPQAHVEAP 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGSV LAG++LK+GGYG IRF PL P AS+YFAP+I LSL+AIIY SL + Q D+K Sbjct: 238 VAGSVILAGVLLKIGGYGFIRFSWPLLPYASEYFAPLIQTLSLLAIIYGSLTTCRQVDLK 297 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 ++IAYSS+AHMG VT+GIFS G+ A+F ML+HGLVSSALF V +Y+R HTR + Sbjct: 298 RIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIVVTFLYERHHTRLVK 357 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 Y G+V MP + ++M+ +AN +P + FIGEF+ +++ F+ S V VLAS+G+VLS Sbjct: 358 YYRGMVITMPLFGILMLSLVLANASIPLSCNFIGEFISLLAAFEYSYVVGVLASWGMVLS 417 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 A YS++LY +V FGV + +DL+ RE ++P+ L GI+P + D Sbjct: 418 AGYSIYLYNRVCFGVPS-RYLHFSRDLNRREFYSLFPLVWLIFLMGIFPFIVIDE 471 >gi|317097234|ref|YP_004123363.1| NADH dehydrogenase subunit 4 [Plakortis simplex] gi|308912756|gb|ADO51512.1| NADH dehydrogenase subunit 4 [Plakortis simplex] Length = 489 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 215/490 (43%), Positives = 301/490 (61%), Gaps = 15/490 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LSI+ FL G ++F + + ++T+ ++ +W FD G FQ + Sbjct: 2 LSIIFFLLLFGTLHVMFIPRENHIQLKLTALQWSLATLTA--TVVLWVTFD-GEGQFQGL 58 Query: 66 EYYHWIDYFC------SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + WI + VDGIS+L ++ T L P CIL SW SI+ +E+++ L Sbjct: 59 KIIEWIPTIVGIWSSGTVVFAVDGISVLFLIXTAILIPICILISWNSIKFLLKEFLLCLL 118 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFM 178 +LE +++G FL LD+LLFYI FE LIPMF+IIGVWG E++ A+Y FF YT GS+ M Sbjct: 119 ILEILLMGVFLILDLLLFYILFEGILIPMFLIIGVWGSREEKVLASYYFFFYTLIGSVLM 178 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L I ++ T+ L + K +Q W+++ FF S AIKIP PFH WLP AHV+ Sbjct: 179 LLGIFMLYSNTGTTDYQTLCGL-KLNGDVQKWVFMGFFVSLAIKIPKIPFHIWLPLAHVE 237 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP AGSV LAG++LK+GGYG IRF PLFP AS+YFAP+I LSL AIIYASL + Q D Sbjct: 238 APVAGSVMLAGVLLKLGGYGFIRFSWPLFPEASEYFAPLIQTLSLFAIIYASLTTCRQVD 297 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 K++IAYSS+AHMG VT+GIF+ G+ A+F ML+HG VSSALF V +Y+R HTR Sbjct: 298 FKRIIAYSSVAHMGLVTLGIFTHTIQGLVSAIFLMLAHGFVSSALFIIVTFLYERHHTRL 357 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + Y G+ MP +++VM++ +AN+ +P + F+GE L +++ F+ S V +LAS G++ Sbjct: 358 VKYYRGVTITMPIFSIVMLLMILANIAVPLSCNFVGELLSLLAAFEYSFIVGLLASLGMI 417 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L A YSL+LY +V FG + + +DL+ RE ++P+ L G+YP I DT Sbjct: 418 LGAAYSLYLYNRVCFG-NTSNFLFFSRDLNRREFYALFPLVFLVYLIGVYPSVIIDTIK- 475 Query: 479 PLSSIIENYT 488 SSII T Sbjct: 476 --SSIIFQET 483 >gi|11466471|ref|NP_038174.1| NADH dehydrogenase subunit 4 [Chrysodidymus synuroideus] gi|7110468|gb|AAF36940.1|AF222718_14 NADH dehydrogenase subunit 4 [Chrysodidymus synuroideus] Length = 482 Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 195/391 (49%), Positives = 270/391 (69%), Gaps = 4/391 (1%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 G+D ISI VLT+ L+ C+L SW + N +++ ++LE +++ F LD++LFYI Sbjct: 77 GLDSISIYFFVLTSLLSFLCVLFSWTN--TNSKDFFFNLILLELLLLLVFSVLDLILFYI 134 Query: 140 FFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 FFEA LIPMF+IIG+ G S +I AAY F YT GSI ML I+ + + TSS ++ Sbjct: 135 FFEAILIPMFLIIGMLGSRSRKIRAAYLLFFYTLIGSILMLVGIIYIYFIVGTSSFEIIF 194 Query: 199 AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 + + F Q W+W+AFF SFA KIPMFPFH WLP AHV+APT GSV LAGI+LK+G YG Sbjct: 195 SYN-FSLQEQQWLWLAFFISFASKIPMFPFHIWLPEAHVEAPTVGSVLLAGILLKLGVYG 253 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +RF L LF AS Y++P ++ L +I I+Y+S ++ QTDIK++IAYSSIAHM V +GI Sbjct: 254 FLRFSLTLFSEASLYYSPFVYVLCIIGILYSSFTAIRQTDIKRIIAYSSIAHMNLVVLGI 313 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 FS G+EG++ Q LSHG VS +F VG++YDR H+R ++ YGGLVH MP Y+ + Sbjct: 314 FSFNIIGLEGSILQSLSHGFVSGGMFLLVGILYDRYHSRLLYYYGGLVHVMPLYSFFFLA 373 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 FT+AN+ PGTS F+GEFL++ ++Q + L++FGV+LSA+YSLWLY ++VFG K Sbjct: 374 FTLANIATPGTSSFVGEFLLLCGIYQINIVTCFLSAFGVILSAVYSLWLYNRLVFGNLKI 433 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Q+ DL LRE ++ + +L +FFG+YP Sbjct: 434 IFTQKFNDLVLRETVILSTLLLLILFFGVYP 464 >gi|124484826|ref|YP_001031208.1| NADH dehydrogenase subunit 4 [Amphimedon queenslandica] gi|113952598|gb|ABI48997.1| NADH dehydrogenase subunit 4 [Amphimedon queenslandica] Length = 483 Score = 353 bits (906), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 199/435 (45%), Positives = 280/435 (64%), Gaps = 5/435 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 VAL S ++ +W +FD G FQ + + W+ + GVDGIS+ ++LT FL Sbjct: 34 VALKWSLAILTTTVLLWVIFDGG-GQFQSVIKFGWLGGM-TLVFGVDGISLFFLILTAFL 91 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P CIL SW SI+ +E+++ L++E +++G F LD++ FYI FE LIPM++II VW Sbjct: 92 IPICILVSWDSIKFLIKEFLLCLLLIEILLMGVFTVLDLVGFYILFEGVLIPMYLIIVVW 151 Query: 156 GG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 G E+I A+Y FF YTF GS+FML I + E + L + +Q +++ Sbjct: 152 GTREEKIRASYYFFFYTFLGSVFMLLGIFAVYSETGLTQYRAL-CNCELREIVQNSVFLG 210 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 F S AIKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PL P A++YF Sbjct: 211 VFISLAIKIPKVPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFTWPLLPEATEYF 270 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 AP+I LSL+AIIY SL + Q D+K++IAYSS+AHMG VT+GIFS G A+F ML Sbjct: 271 APLIMSLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTLQGWVSAVFLML 330 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGLVSSALF V ++Y+R HTR Y G+ MP ++++M + +AN +P +S F+G Sbjct: 331 SHGLVSSALFIVVTLLYERHHTRLTRYYRGVAITMPIFSIIMFLLVLANASVPLSSNFVG 390 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EF +M+ ++ S V ++AS G+VLSA YS++LY +V FG + + +DL+ RE C Sbjct: 391 EFFSLMAAYEYSYFVGIMASTGIVLSATYSIYLYNRVCFG-TPSRYLHLPRDLNRREVCA 449 Query: 455 VYPIAVLTVFFGIYP 469 + P+ VL G++P Sbjct: 450 LLPLVVLIFLLGVFP 464 >gi|119356798|ref|YP_911442.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chlorobium phaeobacteroides DSM 266] gi|119354147|gb|ABL65018.1| NADH dehydrogenase subunit M [Chlorobium phaeobacteroides DSM 266] Length = 545 Score = 353 bits (906), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 207/537 (38%), Positives = 306/537 (56%), Gaps = 61/537 (11%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG------- 58 LS++ FLP L VIL + ++ V+L + + + ++ +W +D Sbjct: 2 LSLIVFLPILAGLVIL--AVPSSQKQIIRIVSLLAAVLQMVLAVMIWRGYDPSLPGITAS 59 Query: 59 -----RSSFQMIEYYHWIDY--------FCSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 + SFQ IE WI Y LGVDGISI +V+LT ++ +LSSW Sbjct: 60 AAGIPQGSFQFIERLPWITLDLGGFGPLNIEYFLGVDGISITMVILTALISAIGVLSSW- 118 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 +IQ+ + Y I + +L + ++G F++LD LFY+F+E L+PM+ +IG+WGG R YAA Sbjct: 119 TIQKQVKGYFILYNLLATAMMGCFVALDFFLFYVFWELMLLPMYFLIGIWGGPNREYAAI 178 Query: 166 KFFLYTFFGSIFML-------FAIVVMCWEKKTSSIIDLYAMSKF-------PFSIQYWM 211 KFFLYT FGS+FML F+++ T S++ + + S + P ++ W Sbjct: 179 KFFLYTLFGSVFMLLVMIGLYFSVLDPVTHNHTFSLVAMASQSNYIKDAILGPDNVM-WR 237 Query: 212 WIAF---FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 +IAF F FAIK+PMFPFHTWLP+AHV+APT SV LAG++LK+G YG +R PLFP Sbjct: 238 YIAFIVLFIGFAIKVPMFPFHTWLPDAHVEAPTPISVILAGVLLKLGTYGMMRINFPLFP 297 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 Q VI I IIY + ++ Q D+KK++AYSSI+HMGYV +G+ + G+ G Sbjct: 298 EVFQASMYVIGVFGAINIIYGAFCALAQQDLKKMVAYSSISHMGYVLLGLAAANSEGMVG 357 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 A++QM +HG +++ LF VGVIYDR HTR I +GGL MP YA ++ V A++GLPG Sbjct: 358 ALYQMFNHGTITAMLFLLVGVIYDRAHTRQIDKFGGLASYMPVYAALVTVAWFASLGLPG 417 Query: 389 TSGFIGEFLVIMSVFQNSNT--VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK- 445 SGFI E LV + F + T +A+++ G+V A Y LW +++ G K + L+ Sbjct: 418 LSGFISEALVFVGAFSSVTTRPIAIVSVLGIVFGAAYLLWSLQRMFLGKRKPDAAYDLEA 477 Query: 446 -----------------DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 DL RE M+ P+ V+ +F GIYP+P+ + ++ ++E Sbjct: 478 GPDGHEHIHFHDWKGKLDLDARELTMLVPLTVIIIFLGIYPMPVLGMLTTSINKLVE 534 >gi|242278972|ref|YP_002991101.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio salexigens DSM 2638] gi|242121866|gb|ACS79562.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio salexigens DSM 2638] Length = 511 Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 197/467 (42%), Positives = 288/467 (61%), Gaps = 8/467 (1%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P L+++ F P L + F G + LG+S I S +++ F ++FQ Sbjct: 7 PVLTVLVFFPLLAAVGLFFLK----GDNTIRMYTLGVSIIELALSFPLFAGFKLESAAFQ 62 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E W+ + Y+LG DGIS L+VVLT + P C+L SW IQ +E+ L + Sbjct: 63 FVERMDWVKQWGVEYYLGTDGISFLMVVLTIAVLPLCVLCSWTYIQTRVKEFHFCLLFMT 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + +G F +LD++LFY+F+EA LIPM+++I VWGG E+ YA+ KFFLYT GS +L AI Sbjct: 123 AACVGVFTALDLVLFYVFWEAMLIPMYLLIAVWGGPEKRYASLKFFLYTLAGSALLLVAI 182 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 V T +I +L F F+ Q+W ++A +FAIK+PMFPFHTWLP AHVQAPTA Sbjct: 183 VAFRIAGGTFAIPELME-QNFAFNFQFWAFLALALAFAIKVPMFPFHTWLPAAHVQAPTA 241 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LA ++LKMG YG +RF LPL P AS+YFAP + +S+ I+Y +V++ Q DIKK+ Sbjct: 242 GSVILASVLLKMGTYGFLRFNLPLTPAASEYFAPFMIAISIAGILYGGIVALGQNDIKKV 301 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+ HMG+VT+GIF + G+EGA+FQML+HG+ + LF +G +Y+R H+R++ Sbjct: 302 IAYSSVGHMGFVTLGIFLFNQRGLEGALFQMLNHGITTGGLFMMIGAVYERSHSRELDDN 361 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL MP Y +F +++ G PGT+ F+GE LV + F+ + + L G +++A Sbjct: 362 LGLGKYMPAYMFFWGLFALSSFGFPGTNSFVGEILVFVGAFEQNPWIGALMVPGAMVAAA 421 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Y L + K+ +G K + DL+LRE + AV ++ G+ P Sbjct: 422 YMLRVSLKLAWGRPTSWK--EWPDLNLREWTYLVIPAVFVLYIGLAP 466 >gi|163848452|ref|YP_001636496.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroflexus aurantiacus J-10-fl] gi|222526380|ref|YP_002570851.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroflexus sp. Y-400-fl] gi|163669741|gb|ABY36107.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroflexus aurantiacus J-10-fl] gi|222450259|gb|ACM54525.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroflexus sp. Y-400-fl] Length = 525 Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 210/501 (41%), Positives = 307/501 (61%), Gaps = 36/501 (7%) Query: 1 MNLPFLSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 + P LS++ +LP +G V+LF + RR V+L I F+ SL + F+ Sbjct: 4 LGFPLLSLILWLPTVGALVLLFVPRTNDELARR----VSLVTMIIGFLLSLLLPLRFETN 59 Query: 59 RSS---------FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ 108 Q +E W+ +Y LG+DGIS+ LV+LTTFL P +LS+W S+ Sbjct: 60 PMQIAAVGAPPVMQFVEELPWLPIVGATYSLGIDGISLWLVMLTTFLGPIVVLSTWDSVH 119 Query: 109 ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFF 168 ++ R + I LVL++ +IG F++ D+LLFY+F+E +LIPM +IG+WG RIYAA KFF Sbjct: 120 KDVRNFQILLLVLQTAMIGVFIAQDLLLFYLFWEFTLIPMTFLIGIWGSQNRIYAARKFF 179 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTS-SIIDLYAMSKFPFS----------------IQYWM 211 LYTF GS+ ML A++ + + + + D F FS + + Sbjct: 180 LYTFAGSVLMLLALIALHILHRDAIAASDPNFRGTFSFSQFVSDMRAGRFTLDTVTERLL 239 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 + AFF +FA+K+P++PFHTWLP+AHV+APTAGSV LAG++LK+GGYG IR+ L LFP A+ Sbjct: 240 FGAFFLAFAVKVPLWPFHTWLPDAHVEAPTAGSVVLAGVLLKLGGYGIIRYNLTLFPAAA 299 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 Q+ AP + L++I IIY + V+ Q+D+K+L+AYSS++HMG+V +GIF+ G+ GA+ Sbjct: 300 QWAAPALAILAVIGIIYGAAVAFAQSDMKRLVAYSSVSHMGFVVLGIFALNAEGISGAVL 359 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 QM++HGL +SALF VGV+Y+R HTRD+ +GGL MP YA ++ +++ GLPG +G Sbjct: 360 QMVNHGLSTSALFLMVGVLYERRHTRDLAEFGGLWKVMPVYAAFSLLVALSSAGLPGLNG 419 Query: 392 FIGEFLVIMSVFQNSNTVAVLASF---GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 F+GEF +I F++ V +F GVVL+A Y L L+R V G L DL+ Sbjct: 420 FVGEFTIITGAFRSPLLGWVYVAFAVGGVVLAAAYLLKLFRSVFMGEVSQPANASLPDLN 479 Query: 449 LRERCMVYPIAVLTVFFGIYP 469 RE +++ V GIYP Sbjct: 480 RRELTAFALLSIPIVVIGIYP 500 >gi|239907419|ref|YP_002954160.1| NADH-quinone oxidoreductase chain M [Desulfovibrio magneticus RS-1] gi|239797285|dbj|BAH76274.1| NADH-quinone oxidoreductase chain M [Desulfovibrio magneticus RS-1] Length = 523 Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 187/432 (43%), Positives = 271/432 (62%), Gaps = 3/432 (0%) Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 +FQ +E W+ +YHLGVDG+S+ +++LT + P C+L SW I + E+ + L Sbjct: 59 AFQFVEKADWLPALGMTYHLGVDGLSLYMILLTALMLPLCVLGSWTYIAKRVTEFHVCLL 118 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++ + IG F +LD +LFY+F+EA L+PM+++I VWGG R YA+ KFFLYT GS +L Sbjct: 119 LMTASCIGVFAALDFVLFYVFWEAMLVPMYLLIAVWGGPRRRYASIKFFLYTLAGSTLLL 178 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AIV T SI +L S + F Q+W ++A +FAIK+PMFPFHTWLP AHV+A Sbjct: 179 AAIVAFRQVGGTFSIPELMEKS-YAFKFQFWAFLAMALAFAIKVPMFPFHTWLPAAHVEA 237 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGSV LA I+LKMG YG +RF LPL P A++ FAP++ +S+ IIY +++ QTDI Sbjct: 238 PAAGSVLLAAILLKMGTYGFLRFCLPLTPAAAETFAPLLIAVSIAGIIYGGCIALGQTDI 297 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+ HMG+VT+GIF GV GA+ QML+HG+ + LF +G++Y+R H+R+I Sbjct: 298 KKLIAYSSVGHMGFVTLGIFLFSVKGVSGAILQMLNHGITTGGLFMMIGLLYERSHSREI 357 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL MP + + VF+++++ PGT+ FIGE LV++ FQ + V A G +L Sbjct: 358 ADNQGLGKFMPAFMFLFGVFSLSSLAFPGTNSFIGEVLVLIGAFQGNPWVGFAAVPGAML 417 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 +A Y L L ++V +G K DL LRE + P+ +L + G+ P T Sbjct: 418 AAAYMLRLLQRVTWGEPAAYK-PSWGDLGLREWVTLAPLGILVFYIGLAPALCIKTIEPS 476 Query: 480 LSSIIENYTLKT 491 ++ ++ K Sbjct: 477 ITRVLSAMEAKN 488 >gi|164421016|ref|YP_001648537.1| NADH dehydrogenase subunit 4 [Iotrochota birotulata] gi|158938946|gb|ABW83872.1| NADH dehydrogenase subunit 4 [Iotrochota birotulata] Length = 479 Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 198/428 (46%), Positives = 275/428 (64%), Gaps = 9/428 (2%) Query: 52 WSVFDKGRSSFQMIEYYHWIDYFCSYHL---GVDGISILLVVLTTFLTPFCILSSWKSIQ 108 W+ FD G FQ+++ WI F L GVDGISI ++LT LTP C+L S KSI+ Sbjct: 46 WASFD-GAGQFQVVKRLEWI--FSVEPLVIFGVDGISIFFIILTALLTPICVLISLKSIK 102 Query: 109 ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKF 167 +E+++ L +E +++G F LD++ FYI FE LIPMF+IIG+WG E+I A+Y F Sbjct: 103 YLIKEFLLCLLFIEVLLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSREEKIQASYYF 162 Query: 168 FLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFP 227 F YTF GS+ ML I + + S+ +QY+++I FF S AIKIP P Sbjct: 163 FFYTFIGSVXMLLGIFTL-YSNVGSTDYQALCCLNIERELQYFVFIGFFLSLAIKIPQMP 221 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 FH WLP AHV+AP AGSV LAG++LK+GGYG IRF PL P A++YF P+I LSL AII Sbjct: 222 FHIWLPQAHVEAPVAGSVVLAGVLLKLGGYGFIRFSWPLLPEAAEYFGPLILTLSLFAII 281 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 Y SL + Q D+K++IAYSS+AHMG VT+G+FS G+ GA+F ML+HGLVSSALF V Sbjct: 282 YGSLTTCRQVDLKRIIAYSSVAHMGLVTLGLFSHTIQGLVGAVFLMLAHGLVSSALFIGV 341 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 +YDR TR I Y G+ MP + ++++V +AN +P + FIGEFL +++ F+ S Sbjct: 342 TFLYDRYRTRLIKYYRGMAITMPLFGMLLLVLVLANASIPLSCNFIGEFLSLLAAFEYSI 401 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 VLAS G+VLSA YS+++Y ++ FG + + +DL+ RE + P+ L + G+ Sbjct: 402 VAGVLASVGMVLSAGYSIYMYNRICFG-AFSNYLYFSRDLNRREVYSILPLVWLIIIMGV 460 Query: 468 YPVPIRDT 475 +P + D Sbjct: 461 FPFLVVDE 468 >gi|189346382|ref|YP_001942911.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chlorobium limicola DSM 245] gi|189340529|gb|ACD89932.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chlorobium limicola DSM 245] Length = 545 Score = 352 bits (903), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 206/536 (38%), Positives = 302/536 (56%), Gaps = 59/536 (11%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG------- 58 LS++ FLP L VIL + ++ V+L + + ++ +W +D Sbjct: 2 LSLIVFLPILAGLVIL--AVPSSQKQIIRMVSLLAAIAQGVLAVLIWQGYDASLPGITAA 59 Query: 59 -----RSSFQMIEYYHWIDY--------FCSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 SFQ IE WI+ Y LGVDG+SI +V+LT ++ +LSSW Sbjct: 60 AGGAPEGSFQFIERLPWINLDLGTMGSLNIEYFLGVDGLSITMVILTALISIIGVLSSWP 119 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 IQ+ + Y I F +L + ++G F++LD LFY+F+E L+PM+ +IG+WGG R YAA Sbjct: 120 -IQKQVKGYFILFNLLSTAMMGCFVALDFFLFYVFWELMLLPMYFLIGIWGGPNREYAAI 178 Query: 166 KFFLYTFFGSIFML-------FAIVVMCWEKKTSSIIDLYAMSKF-------PFSI--QY 209 KFFLYT FGS+FML F++ T S++ + + + P ++ +Y Sbjct: 179 KFFLYTLFGSVFMLLVMIGLYFSVTDPVTGNHTFSLVAMASQENYIKDAILGPDNVMWRY 238 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 +I F FAIK+PMFPFHTWLP+AHV+APT SV LAG++LK+G YG +R PLFP Sbjct: 239 AAFIVLFIGFAIKVPMFPFHTWLPDAHVEAPTPISVILAGVLLKLGTYGMMRINFPLFPE 298 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 Q VI L I IIY + ++ Q D+KK++AYSSI+HMGYV +G+ + G+ GA Sbjct: 299 VFQASLYVIAVLGAINIIYGAFCALAQQDLKKMVAYSSISHMGYVLLGLAAANTEGMVGA 358 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 ++QM +HG +++ LF VGVIYDR HTR I +GGL MP YA V+ + A++GLPG Sbjct: 359 LYQMFNHGTITAMLFLLVGVIYDRAHTRQIDKFGGLASYMPVYAAVVTIAWFASLGLPGL 418 Query: 390 SGFIGEFLVIMSVFQNSNT--VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK-- 445 SGFI E V + F + T VA+++ G+V A Y LW +++ G K + L+ Sbjct: 419 SGFISEAFVFVGAFSSETTRNVAIVSVLGIVFGAAYLLWSLQRMFLGKRKPDAAYDLEVG 478 Query: 446 ----------------DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 DL RE M+ P+AV+ +F GIYP+P+ + ++ ++E Sbjct: 479 ADGHEHIHFHDWKGKLDLDARELVMLVPLAVIVIFLGIYPMPVLGMLTSSINKLVE 534 >gi|298530610|ref|ZP_07018012.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfonatronospira thiodismutans ASO3-1] gi|298509984|gb|EFI33888.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfonatronospira thiodismutans ASO3-1] Length = 536 Score = 352 bits (903), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 202/485 (41%), Positives = 306/485 (63%), Gaps = 8/485 (1%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS + F P + V+ F G + L +S I + + + FD ++FQ Sbjct: 7 PVLSALIFFPLIAAVVLFFLR----GDSNIRLFTLVVSLIECVLVVPILLGFDTTTANFQ 62 Query: 64 MIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E + WI+ + Y+LG+DGIS+L+V+LT L P C+L SWK I + +E+ L++ Sbjct: 63 FVEKHAWIEAWNIYYYLGIDGISVLMVLLTVLLLPICVLCSWKYIGQRVKEFHFCLLLMT 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + IG F +LD +LFYIF+EA LIPM+++I VWGG +R YA+ KFFLYT GS L AI Sbjct: 123 TACIGIFSALDFILFYIFWEAMLIPMYLMIAVWGGPQRRYASLKFFLYTLAGSTLFLAAI 182 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 V T SI +L ++ F Q W ++A +FAIK+P++PFHTWLP AHV+APTA Sbjct: 183 VAFFINTGTFSIPELME-HRYAFQFQLWTFLAMALAFAIKVPLYPFHTWLPAAHVEAPTA 241 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LA I+LKMG YG +RF LP+ P AS++FAP++ L+LI+II SL+++ Q+D+KKL Sbjct: 242 GSVLLASILLKMGTYGFLRFCLPITPAASEFFAPLMIALALISIIVGSLLAIGQSDMKKL 301 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+AHMG+VT+GIF GVEGA+ M++HG+++ A+F VG+IY+R H+R++ Sbjct: 302 IAYSSVAHMGFVTLGIFVFAFRGVEGAIMHMVNHGIITGAMFLLVGLIYERSHSRELSEN 361 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G+ +P Y +++F +A G PGT+GF + LV++ VF+ S + VL G++L + Sbjct: 362 MGVSKYLPAYTGFLLLFGLAAFGFPGTNGFFSKLLVLLGVFEASYILGVLFVIGLILGLV 421 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y L L V +G V+ D++ RE + P+ +L ++ G+ P S + + Sbjct: 422 YLLRLLLNVGWG--SPSSVKGWTDMNTREWVYLVPLGLLVIYLGVAPGRALSFISPSIEN 479 Query: 483 IIENY 487 +++N+ Sbjct: 480 LLDNF 484 >gi|115494864|ref|YP_778634.1| NADH dehydrogenase subunit 4 [Chrysopathes formosa] gi|82792225|gb|ABB90974.1| NADH dehydrogenase subunit 4 [Chrysopathes formosa] Length = 491 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 206/445 (46%), Positives = 282/445 (63%), Gaps = 10/445 (2%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID------YFCSYHLGVDGISILLVV 90 AL S +L +W FD FQ I WI + L VDGIS+ + Sbjct: 37 ALEWSLATLTATLILWGAFDS-EGQFQTINQTEWIVSPTLNFQWGPIFLAVDGISLFFFI 95 Query: 91 LTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 LT LTP CIL SW SI+ +E+++ L LE +++G F +LD+LLFYI FE LIPMF+ Sbjct: 96 LTALLTPICILISWNSIRYLLKEFLLCLLFLEVLLMGVFSALDLLLFYILFEGILIPMFL 155 Query: 151 IIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 +IG+WG E++ A+Y FF YTF GS+FML I + T+ L + K P S Q Sbjct: 156 LIGIWGSREEKVRASYYFFFYTFIGSVFMLLGIFQLYSSTGTTDYQTLLNI-KLPTSTQK 214 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 W++ FF S A+KIP PFH WLP AHV+AP +GSV LAGI+LK+GGYG +RF P+ P Sbjct: 215 WIFAGFFLSLAVKIPQIPFHIWLPQAHVEAPVSGSVILAGILLKLGGYGFLRFSWPILPA 274 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 AS+YFAP+I LS+IAIIY SL + Q D K+LIAYSS+AHMG VT+G+F+ G+ A Sbjct: 275 ASEYFAPLIITLSIIAIIYGSLTTCRQVDFKRLIAYSSVAHMGLVTLGLFTHTIEGMVAA 334 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F ML+HGLVSSALF V +Y+R HTR I Y G+ MP +A++M+V T+ NMG+P + Sbjct: 335 VFMMLAHGLVSSALFIAVTYLYERHHTRLIKYYRGVTITMPIFAIIMLVLTLTNMGIPLS 394 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 F+ EF +++ F+ + + VLA+ G+V SA YSL+LY ++ FG + + +DL+ Sbjct: 395 CNFVAEFFSLLAAFEYNLGIGVLAASGMVWSAAYSLYLYNRLCFG-NASNYLLFARDLNR 453 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRD 474 RE ++P+ VL F G+ P I D Sbjct: 454 REVLAIFPLVVLIFFLGVLPSIIID 478 >gi|317134293|ref|YP_004123148.1| NADH dehydrogenase subunit 4 [Plakina trilopha] gi|308912665|gb|ADO51427.1| NADH dehydrogenase subunit 4 [Plakina trilopha] Length = 486 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 210/461 (45%), Positives = 289/461 (62%), Gaps = 15/461 (3%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH------LGVDGISILLVV 90 AL S ++ +W D G FQ + WI VDGIS+ ++ Sbjct: 31 ALQWSLATLTATIVLWVTLD-GEGQFQALXIIEWIPTTVVIWSSGMVIFAVDGISVXFLI 89 Query: 91 LTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 LT L P CIL SW SI+ +E+++ LVLE +++G FL LD+LLFYI FE LIPM++ Sbjct: 90 LTAILIPICILISWNSIKFLLKEFLLCLLVLEILLMGVFLILDLLLFYILFEGILIPMYL 149 Query: 151 IIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 IIGVWG E++ A+Y FF YT GS+ ML I V+ T+ L + K IQ Sbjct: 150 IIGVWGSREEKVLASYXFFFYTLIGSVLMLLGIFVLYSNTGTTDYQTLCGL-KLNADIQK 208 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 +++ FF S AIKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PLFP Sbjct: 209 GVFLGFFVSLAIKIPKIPFHIWLPLAHVEAPVAGSVMLAGVLLKLGGYGFIRFSWPLFPE 268 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 AS+YFAP++ LSL+A+IYASL + Q D+K++IAYSS+AHMG VT+GIF+ G+ A Sbjct: 269 ASEYFAPLVQTLSLLAVIYASLTACRQADLKRIIAYSSVAHMGLVTLGIFTHTIQGLVSA 328 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F ML+HG VSSALF V ++Y+R HTR + Y G+ MP ++++M + +AN+ +P + Sbjct: 329 IFLMLAHGFVSSALFIIVTLLYERHHTRLVKYYRGMTITMPIFSIIMFLMILANIAVPFS 388 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 F+GE L +++ F+ S V VLAS G+VL A YSL+LY +V FG + + +DL+ Sbjct: 389 CNFVGELLSLLAAFEYSLIVGVLASLGMVLGAAYSLYLYNRVCFG-NTSNFILFSRDLNR 447 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII--ENYT 488 RE ++P+ L G+YP I +T SSII E+YT Sbjct: 448 REFYALFPLVFLVYLIGVYPSVIIETVK---SSIIFQESYT 485 >gi|146325910|gb|ABQ22957.1| NADH dehydrogenase subunit 4 [Agrocybe aegerita] gi|146325912|gb|ABQ22958.1| NADH dehydrogenase subunit 4 [Agrocybe aegerita] Length = 484 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 188/451 (41%), Positives = 297/451 (65%), Gaps = 5/451 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL S INF SLF+W FD + FQ + ++ ++ FC + GVDGIS+ ++LTTF+ Sbjct: 34 IALTTSLINFFISLFLWYEFDSTTTQFQFVSEFNQLN-FCHLNFGVDGISLYFLLLTTFV 92 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 TP +LS++ +I N + ++I+FLVLE++ I AF+SLD+LLFYIFFE+ L +F++I ++ Sbjct: 93 TPIALLSNYTNITTNLKFFLISFLVLETLQICAFVSLDLLLFYIFFESVLPILFIVILLF 152 Query: 156 G-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 G G++R +A FFLYT GS+ ML +I+V+ + S+ L ++ Q +W+ Sbjct: 153 GHGTDRFRSALLFFLYTLAGSLPMLLSILVI-YSYIGSTDFQLISLYDISLESQKLLWLG 211 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF +FA+K P++PF WLP AH +P AGS+ LAG +LK+ YG IR L+ + P A+ YF Sbjct: 212 FFIAFAVKTPLYPFIIWLPKAHSDSPLAGSILLAGTILKLATYGYIRVLINILPDATNYF 271 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 +P+I +++I++IYAS +++Q D K+LIAYSS+AHM V +G+FS G+EGA+ + Sbjct: 272 SPLIQTIAIISLIYASFSTIIQQDTKRLIAYSSVAHMAVVVLGLFSNNLPGIEGAILLGI 331 Query: 335 SHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +HG VS ALF CV GVIYDR TR I GLV MP + ++ +FT+ N G+P + F+ Sbjct: 332 AHGFVSPALFICVGGVIYDRTGTRVINYIRGLVTYMPVFTILFFLFTLCNTGIPLSLNFL 391 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GE L ++ ++Q + +A L + G++LSA YS++LY ++ +G + + LKD++ RE Sbjct: 392 GEQLSLIGIWQTNPIIASLGATGIILSACYSIFLYNRLSYG-NLSPYLPPLKDINRREYF 450 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 ++ + + T FGI+P I +T ++++ Sbjct: 451 LLISLLIPTTIFGIFPNVILNTLHTSTTALL 481 >gi|154174898|ref|YP_001407450.1| NADH dehydrogenase subunit M [Campylobacter curvus 525.92] gi|112803239|gb|EAU00583.1| NADH-quinone oxidoreductase chain m (NADH dehydrogenase i, chain m) (ndh-1, chain m) [Campylobacter curvus 525.92] Length = 505 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 210/499 (42%), Positives = 308/499 (61%), Gaps = 17/499 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRR-SFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 L+++ F P +G + +L R F+GV+ I+ I I +LF W D G F++ Sbjct: 2 LTLIIFFPAIGAML----GFLIEERSIKFYGVS--IAFIELILALFAWFRADFGAYEFEL 55 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 + + SY +GVD IS+ L+V++ F++ + + S++EN + +I+ L LE Sbjct: 56 MSQSALLPTLGISYLVGVDAISLSLIVMSAFMSLVALFA--LSVKENLKHLIISVLFLEM 113 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++G F SLDM++FY+F+E SL+PM IIG WG +RIYAA KFF+YTF GS+FML I+ Sbjct: 114 TMMGVFASLDMIMFYLFWELSLLPMLYIIGAWGSGKRIYAAVKFFIYTFLGSVFMLIGII 173 Query: 184 VMCWEK-KTS-----SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 M + K+S S++D Y + Q W++IAF +FA+K PMFPFHTWLP AH Sbjct: 174 FMAYLNFKSSGAWSFSLLDWYGLG-LSKEAQIWLFIAFAFAFAVKTPMFPFHTWLPYAHG 232 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 QAPT GSV LA ++LKMG YG +R LPLF AS F V+ L I ++Y +L++ Q Sbjct: 233 QAPTIGSVLLAAVLLKMGTYGFVRLCLPLFADASVQFYGVLCTLGAIMVVYTALIAYAQD 292 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K++IAYSSI+HMG + +GIFS G+ GA+F M+SHG+VS ALF VG+IYDR HT+ Sbjct: 293 DMKQVIAYSSISHMGVIILGIFSLNSIGIAGAIFLMISHGVVSGALFLLVGMIYDRRHTK 352 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I +GGL H MPR+A++ V + ++GLP T GF+GEFL ++ VF+ + A G+ Sbjct: 353 LIAEFGGLAHVMPRFALIFGVILLGSIGLPLTIGFVGEFLSLLGVFKINAMFAFFGGIGI 412 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 ++ A+Y L LYR+V FG K E+ LKDL+ +E + P+ +L + G+YP + Sbjct: 413 IVGAIYMLSLYRRVFFGECKNERNLALKDLNFKELIAIVPLCLLVIALGVYPNFLLKPID 472 Query: 478 VPLSSIIENYTLKTGYSDS 496 + +II + D Sbjct: 473 ISTQNIISKMQKRAVLQDD 491 >gi|161524381|ref|YP_001579393.1| proton-translocating NADH-quinone oxidoreductase subunit M [Burkholderia multivorans ATCC 17616] gi|189350864|ref|YP_001946492.1| NADH dehydrogenase I subunit M [Burkholderia multivorans ATCC 17616] gi|160341810|gb|ABX14896.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia multivorans ATCC 17616] gi|189334886|dbj|BAG43956.1| NADH dehydrogenase I chain M [Burkholderia multivorans ATCC 17616] Length = 509 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 192/494 (38%), Positives = 304/494 (61%), Gaps = 17/494 (3%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRR---SFFGVALGISTINFIFSLFVWSVFDK 57 + PFLS+ + P L G ++ S R + G G++T+ I + FD Sbjct: 3 DFPFLSLAIWAPILFGACLLRAGSDQHLQRTRLIALIGAIAGLATVAPIVA-----GFDP 57 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++ Q +E + + F + GVDG S+ LVVLT F T +++SW+++ +Y Sbjct: 58 HSAAMQFVESRNGLSAFGAGWRTGVDGASLWLVVLTAFTTLVVVVASWQAVTVRVAQYYA 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 +FL+L ++IG F++ D LLF+IFFEA+LIP++++IG WG R+YAA KFF +F GS+ Sbjct: 118 SFLILSGLMIGVFVAQDGLLFFIFFEATLIPLYLLIGTWGREHRVYAAVKFFFISFAGSL 177 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPN 234 +L A++ + + T D+ A + Q +++ FF +FA+K+PM+P HTWL + Sbjct: 178 LLLMAMLYLYAKSHT---FDMAAWRTLQLGLAPQLLVFLGFFAAFAVKVPMWPVHTWLRD 234 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 + PT ++ LA MLK+GGYG +RF LP+ P AS +FAP + LSL AI+YASL+++ Sbjct: 235 VYTDGPTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLLAL 292 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ C V+ DR Sbjct: 293 AQTDFGKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCASVLVDRT 352 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 R++ AYGG+ MPR+A+ ++F MAN+GLPGTSGF+GEF+VIM + + + A+ Sbjct: 353 KQREMTAYGGVASAMPRFAMFAVLFAMANVGLPGTSGFVGEFMVIMGAIRVNFWIGAAAA 412 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 ++ SA Y+LW+ ++VV+G + + +L DLS RE M +A++ + GI P P D Sbjct: 413 LTLIFSASYTLWMLKRVVWGRAPSASIAKLVDLSGREIAMFASLALIVLAVGIDPKPFTD 472 Query: 475 TFSVPLSSIIENYT 488 + ++ + + Sbjct: 473 AIDPTVGRLLADAS 486 >gi|88608616|ref|YP_506568.1| NADH dehydrogenase I, M subunit [Neorickettsia sennetsu str. Miyayama] gi|88600785|gb|ABD46253.1| NADH dehydrogenase I, M subunit [Neorickettsia sennetsu str. Miyayama] Length = 453 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 179/343 (52%), Positives = 243/343 (70%), Gaps = 5/343 (1%) Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 FL+ D+L FYI FE SLIP+F IIG+WGG +R+YAA+K FLYT FGSI L +I+ + E Sbjct: 106 FLATDLLTFYIMFELSLIPIFFIIGLWGGKKRVYAAFKIFLYTLFGSIGFLISILYLFAE 165 Query: 189 KKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T I L + + P + Q +WIAFF +FA+KIPMFPFHTWLP+AHVQAPT GSV Sbjct: 166 LGTLEISSLVHLVENTIPIAAQKLIWIAFFLAFAVKIPMFPFHTWLPDAHVQAPTEGSVM 225 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAG+++K+G YG ++ LLP+FP S+ F+ ++ LS IA+IY SLV++ QTDIKKLIAYS Sbjct: 226 LAGVLIKLGAYGMLKVLLPIFPSLSREFSTLVLSLSAIAVIYTSLVALAQTDIKKLIAYS 285 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 SIAHMG VT G+F+ G +GA+FQMLSHGLVSS LFFC+G IYDR TR I + G++ Sbjct: 286 SIAHMGIVTAGLFAFNIEGYKGAVFQMLSHGLVSSGLFFCIGYIYDRSATRQIADHSGIM 345 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 + PR M+F++A +GLPGT+GF+GEFL +FQ+ T A+L + GVVL A Y L+ Sbjct: 346 NFAPRLGFAFMIFSLAAIGLPGTAGFVGEFLAFTGLFQSMETFAILCATGVVLGACYMLY 405 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L +++++G + + Q D+ L E + + +L +F G+ P Sbjct: 406 LCKRIIWGTPEGKIFQ---DIHLHESIPLITLIILVMFLGLRP 445 >gi|11465868|ref|NP_066417.1| NADH dehydrogenase subunit 4 [Ochromonas danica] gi|10505201|gb|AAG18383.1|AF287134_8 NADH dehydrogenase subunit 4 [Ochromonas danica] Length = 483 Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 190/418 (45%), Positives = 274/418 (65%), Gaps = 6/418 (1%) Query: 55 FDKGRSSFQMIEYYHWIDYFC--SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 FD + FQ + Y++ F S+ G+DGISI LT+ L C+L + N + Sbjct: 50 FDSNSNDFQNLVTYNFDSDFLNLSFSFGLDGISIFFFFLTSLLIFLCVLYVLN--ENNLK 107 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYT 171 +Y++ + +E +++ F LD++LFYIFFEA LIPMF+IIGV+G ER + A Y FF YT Sbjct: 108 QYLVLLISIELILLIIFSVLDLMLFYIFFEAILIPMFIIIGVYGSRERKVRAVYLFFFYT 167 Query: 172 FFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 +L V+ + K S ++ +F + + +W AFF SFA KIPMFPFH W Sbjct: 168 L-CGSLLLLVGVLYIYSKIGSFNLEYLMCYQFTKTEELLLWFAFFLSFASKIPMFPFHIW 226 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP AHV+APT GSV LAG++LK+G YG IRF L LFP AS +++P I+FLSLI+IIYASL Sbjct: 227 LPEAHVEAPTIGSVLLAGVLLKLGVYGFIRFSLTLFPYASLFYSPFIYFLSLISIIYASL 286 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ QTD+K++IAYSSIAHM VT+GIF+ G+EG++ Q LSHG V+ +FF +G++Y Sbjct: 287 TALRQTDLKRIIAYSSIAHMNLVTLGIFAFNNIGLEGSIIQSLSHGFVAGGMFFLIGILY 346 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 R H+R ++ YGGL H MP Y++ ++ T+AN+ LPGTS F GEFL++ +++ + + Sbjct: 347 SRYHSRFLYYYGGLAHTMPVYSIFFLLLTIANIALPGTSSFTGEFLLLSGIYKVNTITGI 406 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +A+ V+LS YSLWL +V+F K + DLSL+E +++P+ V F G+YP Sbjct: 407 IAATSVILSGAYSLWLCNRVLFSNIKEHYTLKFIDLSLKEFFIMFPLVVFIFFIGLYP 464 >gi|221215755|ref|ZP_03588715.1| NADH-quinone oxidoreductase subunit m (nadh dehydrogenase i subunit m) (ndh-1 subunit m) [Burkholderia multivorans CGD1] gi|221164367|gb|EED96853.1| NADH-quinone oxidoreductase subunit m (nadh dehydrogenase i subunit m) (ndh-1 subunit m) [Burkholderia multivorans CGD1] Length = 557 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 190/491 (38%), Positives = 304/491 (61%), Gaps = 11/491 (2%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + PFLS+ + P L G ++ S R + I+ + + + + FD + Sbjct: 51 DFPFLSLAIWAPILFGACLLRAGSDQHLQRTRVIALIGAIAGLAAVVPIV--AGFDPHSA 108 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q +E + + F + GVDG S+ LVVLT F T +++SW+++ +Y +FL Sbjct: 109 AMQFVESRNGLSAFGAGWRTGVDGASLWLVVLTAFTTLVVVVASWQAVTVRVAQYYASFL 168 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L ++IG F++ D LLF+IFFEA+LIP++++IG WG R+YAA KFF +F GS+ +L Sbjct: 169 ILSGLMIGVFVAQDGLLFFIFFEATLIPLYLLIGTWGREHRVYAAVKFFFVSFAGSLLLL 228 Query: 180 FAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A++ + + T D+ A + F+ Q +++ FF +FA+K+PM+P HTWL + + Sbjct: 229 MAMLYLYAKSHT---FDMAAWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLRDVYT 285 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 PT ++ LA MLK+GGYG +RF LP+ P AS +FAP + LSL AI+YASL+++ QT Sbjct: 286 DGPTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSLFAIVYASLLALAQT 343 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ C V+ DR R Sbjct: 344 DFGKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCASVLVDRTKQR 403 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 ++ AYGG+ MPR+A+ ++F MAN+GLPGTSGF+GEF+VIM + + + A+ + Sbjct: 404 EMTAYGGVASAMPRFAMFAVLFAMANVGLPGTSGFVGEFMVIMGAIRVNFWIGAAAALTL 463 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 + SA Y+LW+ ++VV+G + + +L DLS RE M +A++ + GI P P D Sbjct: 464 IFSASYTLWMLKRVVWGRAPSASIAKLVDLSGREIAMFASLALIVLAVGIDPKPFTDAID 523 Query: 478 VPLSSIIENYT 488 + ++ + + Sbjct: 524 PTVGRLLADAS 534 >gi|109156562|ref|YP_654372.1| NADH dehydrogenase subunit 4 [Nematostella sp. JVK-2006] gi|108744125|gb|ABG02346.1| NADH dehydrogenase subunit 4 [Nematostella sp. JVK-2006] Length = 491 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 198/428 (46%), Positives = 271/428 (63%), Gaps = 10/428 (2%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID------YFCSYHLGVDGISILLVV 90 AL S +L +W+ FD FQ I WI + VDGIS+ +V Sbjct: 37 ALEWSLATLTATLVLWASFDT-EGQFQTINQTEWIVPPALSLKWGPLFFAVDGISLFFLV 95 Query: 91 LTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 LT L P CIL SW SI+ +E+++ L LE +++G F +LD+LLFYI FE LIPMF+ Sbjct: 96 LTALLIPICILISWNSIKFLLKEFLLCLLFLEVLLMGVFSALDLLLFYILFEGILIPMFL 155 Query: 151 IIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 +IGVWG E++ A+Y FF YTF GS+FML I + T+ + L + P S Q Sbjct: 156 LIGVWGSREEKVRASYYFFFYTFVGSVFMLLGIFKLYSTTGTTDYLTLLNIELSP-STQK 214 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 W++ FF S A+KIP PFH WLP AHV+AP +GSV LAGI+LK+GGYG +RF PL P Sbjct: 215 WIFAGFFLSLAVKIPQIPFHIWLPQAHVEAPVSGSVILAGILLKLGGYGFLRFSWPLLPA 274 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 A++YFAP++ LS+IA+IY SL + Q D K+LIAYSS+AHMG VT+G+F+ G+ A Sbjct: 275 ATEYFAPLVIMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVTLGLFTHTIEGLVAA 334 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 MF ML+HG+VSSALF V +YDR HTR I Y G+ +MP +A + +V T+ NMG+P + Sbjct: 335 MFMMLAHGVVSSALFIAVTFLYDRHHTRLIKYYRGITISMPLFASMFLVLTLTNMGIPLS 394 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 F+ EF +++ F+ S + VLA+ G+V SA YSL+LY ++ FG S + +DL+ Sbjct: 395 CNFVAEFFSLLAAFEYSKLIGVLAATGMVWSAAYSLYLYNRISFG-SPSNYLLFARDLNR 453 Query: 450 RERCMVYP 457 RE + P Sbjct: 454 RELWAIAP 461 >gi|194336913|ref|YP_002018707.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pelodictyon phaeoclathratiforme BU-1] gi|194309390|gb|ACF44090.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pelodictyon phaeoclathratiforme BU-1] Length = 544 Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 204/537 (37%), Positives = 305/537 (56%), Gaps = 61/537 (11%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR------ 59 LS++ FLP + VIL + ++ V+L + + ++ +W +D Sbjct: 2 LSLIVFLPIIAGLVIL--AVPSSQKQIIRIVSLLAALAQGVLAVLIWRGYDPALPGITAG 59 Query: 60 ------SSFQMIEYYHWIDYFC--------SYHLGVDGISILLVVLTTFLTPFCILSSWK 105 SFQ +E WI Y LG+DGIS+ +V+LT ++ ILSSW Sbjct: 60 PGGSPLGSFQFVERVPWISLNLGGFGSLNIEYFLGIDGISVTMVILTALVSAIGILSSW- 118 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 +IQ+ + Y I + +L S ++G F++LD LFY+F+E L+PM+ +IG+WGG R YAA Sbjct: 119 TIQKQVKGYFILYNLLASAMMGCFVALDFFLFYVFWEVMLLPMYFLIGIWGGPNREYAAI 178 Query: 166 KFFLYTFFGSIFML-------FAIVVMCWEKKTSSIIDLYAMSKF-------PFSIQYWM 211 KFFLYT FGS+FML F+++ T S++ + + + P ++ W Sbjct: 179 KFFLYTLFGSVFMLLVMIGLYFSVIDPLTGNHTFSLVAMASQENYIKDAILGPDNV-VWR 237 Query: 212 WIAF---FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 ++AF F FAIK+PMFPFHTWLP+AHV+APT SV LAG++LK+G YG IR PLFP Sbjct: 238 YVAFIVLFIGFAIKVPMFPFHTWLPDAHVEAPTPISVILAGVLLKLGTYGMIRINFPLFP 297 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 Q VI I IIY + ++ Q D+KK++AYSSI+HMGYV +G+ +G G+ G Sbjct: 298 EVFQASMYVIGIFGAINIIYGAFCALAQKDLKKMVAYSSISHMGYVLLGLSAGNSEGMVG 357 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 A++QM +HG +++ LF VGVIYDR HTR I +GGL MP YA ++ V A++GLPG Sbjct: 358 ALYQMFNHGTITAMLFLLVGVIYDRAHTRQIEKFGGLASYMPVYAAIVTVAWFASLGLPG 417 Query: 389 TSGFIGEFLVIMSVFQNSNT--VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK- 445 SGFI E LV + F + T +A+++ G+V A Y LW +++ G + + L+ Sbjct: 418 LSGFISEALVFVGAFSSETTRPIAIVSVLGIVFGAAYLLWSLQRMFLGKRRDDAAYDLEV 477 Query: 446 -----------------DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 DL RE M+ P+ V+T+F GIYP+P+ + ++ +++ Sbjct: 478 GEDGHEHIHFHDWKGKLDLDGRELAMLVPLVVITIFLGIYPMPVLGMLTTSINKLVQ 534 >gi|221198376|ref|ZP_03571422.1| NADH-quinone oxidoreductase subunit m (nadh dehydrogenase i subunit m) (ndh-1 subunit m) [Burkholderia multivorans CGD2M] gi|221208947|ref|ZP_03581944.1| NADH-quinone oxidoreductase subunit m (nadh dehydrogenase i subunit m) (ndh-1 subunit m) [Burkholderia multivorans CGD2] gi|221171230|gb|EEE03680.1| NADH-quinone oxidoreductase subunit m (nadh dehydrogenase i subunit m) (ndh-1 subunit m) [Burkholderia multivorans CGD2] gi|221182308|gb|EEE14709.1| NADH-quinone oxidoreductase subunit m (nadh dehydrogenase i subunit m) (ndh-1 subunit m) [Burkholderia multivorans CGD2M] Length = 557 Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 191/494 (38%), Positives = 305/494 (61%), Gaps = 17/494 (3%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRR---SFFGVALGISTINFIFSLFVWSVFDK 57 + PFLS+ + P L G ++ S R + G G++ + I + FD Sbjct: 51 DFPFLSLAIWAPILFGACLLRAGSDQHLQRTRLIALIGAIAGLAAVAPIVA-----GFDP 105 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++ Q +E + + F + GVDG S+ LVVLT F T +++SW+++ +Y Sbjct: 106 HSAAMQFVENRNGLSAFGAGWRTGVDGASLWLVVLTAFTTLVVVVASWQAVTVRVAQYYA 165 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 +FL+L ++IG F++ D LLF+IFFEA+LIP++++IG WG R+YAA KFF +F GS+ Sbjct: 166 SFLILSGLMIGVFVAQDGLLFFIFFEATLIPLYLLIGTWGREHRVYAAVKFFFISFAGSL 225 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 +L A++ + + T D+ A + F+ Q +++ FF +FA+K+PM+P HTWL + Sbjct: 226 LLLMAMLYLYAKSHT---FDMAAWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWLRD 282 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 + PT ++ LA MLK+GGYG +RF LP+ P AS +FAP + LS+ AI+YASL+++ Sbjct: 283 VYTDGPTGAALMLA--MLKLGGYGFLRFALPITPDASHFFAPAVIALSVFAIVYASLLAL 340 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ C V+ DR Sbjct: 341 AQTDFGKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCASVLVDRT 400 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 R++ AYGG+ MPR+A+ ++F MAN+GLPGTSGF+GEF+VIM + + + A+ Sbjct: 401 KQREMTAYGGVASAMPRFAMFAVLFAMANVGLPGTSGFVGEFMVIMGAIRVNFWIGAAAA 460 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 ++ SA Y+LW+ ++VV+G + + +L DLS RE M +A++ + GI P P D Sbjct: 461 LTLIFSASYTLWMLKRVVWGRAPSASIAKLVDLSGREIAMFASLALIVLAVGIDPKPFTD 520 Query: 475 TFSVPLSSIIENYT 488 + ++ + + Sbjct: 521 AIDPTVGRLLADAS 534 >gi|108758088|ref|YP_629341.1| NADH dehydrogenase I subunit M [Myxococcus xanthus DK 1622] gi|108461968|gb|ABF87153.1| NADH dehydrogenase I, M subunit [Myxococcus xanthus DK 1622] Length = 577 Score = 350 bits (897), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 199/517 (38%), Positives = 300/517 (58%), Gaps = 48/517 (9%) Query: 5 FLSIVTFLP--FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 L++V FLP F + +L + G R F +A+ ++ F ++ + + G F Sbjct: 8 LLNLVVFLPLVFAALVALLPAGESGQIRTVTF-IAM---VLDLAFGVWAYMAYVPGGPEF 63 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ W D F SYH+GVDG+++ L++LT FL P +L+S I+ +E+ +A LVL Sbjct: 64 QLEYRARWFDLFGTSYHIGVDGLAVSLLLLTVFLGPLVVLASTTYIKFRIKEFHLALLVL 123 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ++ ++GA +SLD+LLFYIFFEA LIPM++++GVWG +R AA KFFLYT GS+ ML A Sbjct: 124 QTTMLGALVSLDVLLFYIFFEAMLIPMYLLVGVWGAEDRQMAAVKFFLYTLAGSLLMLVA 183 Query: 182 IVVM------------------------------CWEKKTSSIIDLYAMSKFPFSIQYWM 211 I+ + C + L ++ + W+ Sbjct: 184 IIAVYFISSPVGARSFDYASIYNGLLDANRQLSACTAGPAGACDSLTGLAATLHTWGPWL 243 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 + AF +FA+K+PM+P HTWLP+AHVQAP AGS+ LAG+ LKMG +G R+ +P FP+A+ Sbjct: 244 FAAFAIAFAVKVPMWPLHTWLPDAHVQAPVAGSMILAGVTLKMGTFGFWRYAIPFFPVAT 303 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 Q P + L++I I+Y +L+ + Q DIKKLIAYSS++H+GY +GI + G G+ + Sbjct: 304 QQARPFLATLAVIGIVYGALMCLAQRDIKKLIAYSSVSHLGYCMLGILAITAEGATGSAY 363 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 QML+HG+ + ALF G +Y+R H+R + YGG+ MP + ++ T +++ +PGT+G Sbjct: 364 QMLNHGVSTGALFLLFGYLYERRHSRLMADYGGIAKVMPVFTAAFVIITFSSIAVPGTNG 423 Query: 392 FIGEFLVIMSVFQ--------NSNTVAVLASF---GVVLSALYSLWLYRKVVFGVSKCEK 440 FIGEFLV++ F+ N + AV +F GV+L A Y LW+ +KV FG + Sbjct: 424 FIGEFLVLLGTFKSDLGEAAGNPHLTAVFGAFATLGVILGAAYMLWMVQKVFFGGITHRE 483 Query: 441 VQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 Q L D++LRE V P VL G+ P P D + Sbjct: 484 NQHLTDMNLREGLTVLPFIVLVAVMGLQPQPFLDRLA 520 >gi|124286765|ref|YP_001023659.1| NADH dehydrogenase subunit 4 [Savalia savaglia] gi|110083984|gb|ABG49161.1| NADH dehydrogenase subunit 4 [Savalia savaglia] Length = 504 Score = 349 bits (895), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 201/453 (44%), Positives = 279/453 (61%), Gaps = 23/453 (5%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI--------------DYFCSYH---- 78 AL S +L +W FD G FQ I W+ + ++ Sbjct: 37 ALEWSLATLAATLILWGAFDSG-GQFQTINQTEWVVSPAFKSGLISQDLPFPGNFQWGPI 95 Query: 79 -LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 L VDGIS+ +LT L P CIL SW SI+ +E+++ L LE +++G F +LD+LLF Sbjct: 96 VLAVDGISLFFFILTALLIPICILISWNSIKYLLKEFLLCLLFLEILLMGVFSALDLLLF 155 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE LIP+F++IG+WG E++ A+Y FF YT GS+FML I + T+ Sbjct: 156 YILFEGILIPVFLLIGIWGSREEKVRASYYFFFYTLMGSVFMLLGIFQLYDIAGTTDYQT 215 Query: 197 LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 L + K P S Q W++ FF S A+KIP PFH WLP AHV+AP +GSV LAG++LK+GG Sbjct: 216 LLNI-KLPESTQKWIFAGFFLSLAVKIPKVPFHIWLPQAHVEAPVSGSVILAGVLLKLGG 274 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 YG +RF PL P AS+YFAP+I LS IAI+Y SL + Q D K+LIAYSS+AHMG VT+ Sbjct: 275 YGFLRFSWPLLPAASEYFAPLIITLSGIAIVYGSLTTCRQVDFKRLIAYSSVAHMGLVTL 334 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 G+F+ G+ A+F ML+HG+VSSALF V +Y+R HTR I Y G+ MP +A +M Sbjct: 335 GLFTHTIEGLVAAVFLMLAHGIVSSALFIAVTFLYERHHTRLIKYYRGITITMPIFATMM 394 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 +V T+ NM +P + F+GEF +++ F+ S + VLA+ G+VLSA YSL+LY ++ FG + Sbjct: 395 LVLTLTNMAIPLSCNFVGEFFSLLAAFEYSLVIGVLAASGMVLSAAYSLYLYNRICFGDA 454 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + +DL+ RE + P+ +L F GI P Sbjct: 455 SNYHLFP-RDLNRREALAMAPLVILIFFLGILP 486 >gi|163781767|ref|ZP_02176767.1| NADH dehydrogenase I chain M [Hydrogenivirga sp. 128-5-R1-1] gi|159882987|gb|EDP76491.1| NADH dehydrogenase I chain M [Hydrogenivirga sp. 128-5-R1-1] Length = 491 Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 207/479 (43%), Positives = 301/479 (62%), Gaps = 20/479 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS++ FLP + VI R F V++G+S I F+ SL ++ FD + FQ Sbjct: 5 LSLIIFLPLIAAGVI------AIVRNDTFTKLVSVGVSGIVFLLSLVLFFNFDFTKEGFQ 58 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + WI SYH+G+DG+++ L+V+T L + SWK I++ Y FL+LE Sbjct: 59 FVTKLSWIPTLGISYHIGLDGMAVSLIVMTALLFLAVFIWSWK-IEDRPVLYTALFLLLE 117 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF-- 180 + +G F +LD LFYIF+E LIPM+ IIG WG ++YAA KFF+YTFFGS+F+L Sbjct: 118 TACLGVFSALDFFLFYIFWEGMLIPMYFIIGFWGHDRKVYAANKFFIYTFFGSLFLLLGL 177 Query: 181 -AIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 +I+V + D +K +P IQ ++ F FA+KIPMFP HTWLP+AHV Sbjct: 178 ASIIVYGYFATGQITFDYIEHAKMGYPLWIQLAAFLLFGIGFAVKIPMFPVHTWLPDAHV 237 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAG++LKMG +G +R+ L LFP AS+Y+ P+IF LS+IAIIYA+++++ QT Sbjct: 238 EAPTAGSVILAGVLLKMGTFGFVRYSLSLFPDASKYYIPLIFTLSVIAIIYAAMMAIAQT 297 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 IK+LIAYSSI+HMG VT+G F+ K + GA++ M++HGL S ALFF G IYDR+H+ Sbjct: 298 HIKRLIAYSSISHMGIVTLGTFALDKDALNGAVYMMIAHGLSSGALFFAAGFIYDRIHSY 357 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 ++ GGL +P +A+ M+ +A +GLPG +GFI EFLV++ F+ AV+A G+ Sbjct: 358 NMDDLGGLAKYLPNFAIFFMIAGLAGIGLPGLAGFIAEFLVLLGTFKAHPVWAVIAGTGM 417 Query: 418 VLSALYSLWLYRKVVFGVS-----KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +L A Y L++Y++V+ + EK QL+D+ + I ++ G+YP P Sbjct: 418 ILGAAYFLYMYKRVMLEEETISDHRREKWAQLRDVEVHHVIPFVLILLVAFVMGLYPAP 476 >gi|110598458|ref|ZP_01386729.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chlorobium ferrooxidans DSM 13031] gi|110339908|gb|EAT58412.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chlorobium ferrooxidans DSM 13031] Length = 546 Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 210/539 (38%), Positives = 303/539 (56%), Gaps = 64/539 (11%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK------ 57 LS++ FLP + +IL SS R A+G + F+ +W +D Sbjct: 2 LSLIVFLPIIAGLIILAVPSSQKQIIRIVSLLAAIGQGVLAFL----IWRGYDPSIPGIT 57 Query: 58 ---GRS---SFQMIEYYHWID--------YFCSYHLGVDGISILLVVLTTFLTPFCILSS 103 G S SFQ +E WI+ Y LGVDGIS+ +V+LT ++ +LSS Sbjct: 58 AGPGGSAFGSFQFVEKLSWININLGALGSMNIDYFLGVDGISVTMVILTALVSAIGVLSS 117 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYA 163 W +IQ+ + Y I + +L + ++G F++LD LFY+F+E L+PM+ +IG+WGG R YA Sbjct: 118 W-TIQKQVKGYFILYNLLATAMMGCFVALDFFLFYVFWELMLLPMYFLIGIWGGPNREYA 176 Query: 164 AYKFFLYTFFGSIFML-------FAIVVMCWEKKTSSIIDLYAMSKFPFS-------IQY 209 A KFFLYT FGS+FML F++ T S++ + S F + Sbjct: 177 AIKFFLYTLFGSVFMLLVMIGLYFSVTDPVTGNHTFSLVAMATQSNFNVAGAIFAPENHG 236 Query: 210 WMWIAF---FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 W IAF F FAIK+PMFPFHTWLP+AHV+APT SV LAG++LK+G YG +R PL Sbjct: 237 WRLIAFIVLFIGFAIKVPMFPFHTWLPDAHVEAPTPISVILAGVLLKLGTYGMMRINFPL 296 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 FP Q VI I IIY + ++ Q D+KK++AYSSI+HMGYV +G+ +G G+ Sbjct: 297 FPEVFQASMYVIGIFGAINIIYGAFCALAQQDLKKMVAYSSISHMGYVLLGLAAGNSEGM 356 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 GA++QM +HG +++ LF VGVIYDR HTR I +GGL MPRYA V+ + A++GL Sbjct: 357 LGALYQMFNHGTITAMLFLLVGVIYDRAHTRQIDKFGGLSSYMPRYAAVVTIAWFASLGL 416 Query: 387 PGTSGFIGEFLVIMSVFQNSNT--VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL 444 PG SGFI E V + F + T +A+++ G+V A Y LW +++ G K + L Sbjct: 417 PGLSGFISEAFVFVGAFSSVTTRPIAIVSVLGIVFGAAYLLWSLQRMFLGKRKPDAAYDL 476 Query: 445 K------------------DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + DL RE M+ P+AV+T+ GIYP+P+ + ++ +++ Sbjct: 477 EVDAEGHEHIHFHDWKGKLDLDARELVMLVPLAVITIALGIYPMPVIGMLTSSINKLVQ 535 >gi|298507463|gb|ADI86186.1| NADH dehydrogenase I, M subunit [Geobacter sulfurreducens KN400] Length = 496 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 180/422 (42%), Positives = 278/422 (65%), Gaps = 8/422 (1%) Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E WI+ F Y LG+DGIS+L+V LT F T +L SW+ I E + L++ES Sbjct: 70 EDAAWIERFGIRYLLGMDGISLLMVALTAFTTVVAMLVSWRGITERATLHYFLILLMESG 129 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G FLSLD++LFY+F+E LIPMF +IG+WG RIY+A KFFLYT GS+ ML AI+ Sbjct: 130 IMGVFLSLDLVLFYLFWEVMLIPMFFLIGIWGHGRRIYSAVKFFLYTLVGSLLMLLAIIG 189 Query: 185 MCWEKKTSS-----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + ++ + L A S + W++ AF +FAIK P+FP HTWLP+AH A Sbjct: 190 VYFIHGDATGTFTFALPLLAKSPIAHAAAPWLFGAFLLAFAIKFPLFPVHTWLPDAHTDA 249 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LA ++LK G YG +RF PLFP A++ F P+++ L++I I+YAS ++ Q D+ Sbjct: 250 PTAGSVILAALLLKTGAYGLVRFGYPLFPEAAKGFTPLLYVLAIIGILYASWIAYAQEDM 309 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+++AYSS+ HMG+V +GI S + G++ QM++HG ++ALF VG++ +R HTR++ Sbjct: 310 KRMVAYSSVGHMGFVALGIASWGPVALSGSILQMVNHGFTTAALFALVGMLDERAHTREV 369 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 A+GGL MP ++ + F MA+ GLPG + F+GEFL+++ VF+ + +A G+VL Sbjct: 370 SAFGGLWGTMPAFSFFFLFFAMASAGLPGLNNFVGEFLILVGVFRITPAAGAIAFLGIVL 429 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 +Y++ L ++V+F + + +L DL+LRE ++ +AV+ ++ G++P P+ D VP Sbjct: 430 PLIYTVRLVQEVLFQTER--RPLRLPDLTLREGAVLAVLAVIDLYIGVHPKPLLDILKVP 487 Query: 480 LS 481 ++ Sbjct: 488 VA 489 >gi|317097124|ref|YP_004123256.1| NADH dehydrogenase subunit 4 [Plakina jani] gi|308912725|gb|ADO51483.1| NADH dehydrogenase subunit 4 [Plakina jani] Length = 487 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 209/460 (45%), Positives = 285/460 (61%), Gaps = 14/460 (3%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH------LGVDGISILLVV 90 AL S ++ +W FD G FQ ++ WI VDGIS+ Sbjct: 31 ALQWSLATLTATIVLWVTFD-GEGQFQALKIIEWIPTTVVIWSSGMVIFAVDGISVFFXX 89 Query: 91 LTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 LT L P CIL SW SI+ +E+++ LVLE +++G FL LD+LLFYI FE LIPMF+ Sbjct: 90 LTAILIPICILISWNSIKFLLKEFLLCLLVLEILLMGVFLILDLLLFYILFEGILIPMFL 149 Query: 151 IIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 IIGVWG E++ A+Y FF YT GS+ ML I V+ T+ L + + Sbjct: 150 IIGVWGSREEKVLASYYFFFYTLIGSVLMLLGIFVLYSNTGTTDYQTLCGLKLSADXPKK 209 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 +++ FF S AIKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PLFP Sbjct: 210 VVFLGFFVSLAIKIPKIPFHIWLPLAHVEAPVAGSVMLAGVLLKLGGYGFIRFSWPLFPE 269 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 AS+YFAP++ LSL+A+IYASL + Q D K++IAYSS+AHMG VT+GIF+ G+ A Sbjct: 270 ASEYFAPLVQTLSLLAVIYASLTTCRQVDFKRIIAYSSVAHMGLVTLGIFTHTIQGLVSA 329 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F ML+HG VSSALF V ++Y+R HTR + Y G+ MP ++++M + +AN+ +P + Sbjct: 330 IFLMLAHGFVSSALFIIVTLLYERHHTRLVKYYRGVTITMPIFSIIMFLMILANIAVPFS 389 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 F+GE L +++ F+ S V VLAS G+VL A YSL+LY +V FG + + +DL+ Sbjct: 390 CNFVGELLSLLAAFEYSLIVGVLASLGMVLGAAYSLYLYNRVCFG-NTSNFILFSRDLNR 448 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII--ENY 487 RE ++P+ L G+YP I DT SSII E+Y Sbjct: 449 REFYALFPLVFLVYLIGVYPSVIIDTVK---SSIIFQESY 485 >gi|15088715|ref|NP_150124.1| NADH dehydrogenase subunit 4 [Schizophyllum commune] gi|15077922|gb|AAK83408.1|AF402141_12 NADH dehydrogenase subunit 4 [Schizophyllum commune] Length = 505 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 192/449 (42%), Positives = 291/449 (64%), Gaps = 5/449 (1%) Query: 35 GVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTF 94 +AL S IN SLF+W FD +++Q + + ++ F ++ G+DGISI V+LTTF Sbjct: 53 DIALITSLINLFISLFIWFNFDFSTNNYQFVSEWSALN-FLNFSFGIDGISIYFVLLTTF 111 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +TP ILS++ +I EN + + +FL+LE++ I F+SLD+LLFYIFFE+ L +FVII + Sbjct: 112 VTPIAILSNYHNINENTKLFFTSFLILETLQICVFVSLDLLLFYIFFESVLPVIFVIILI 171 Query: 155 WG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 +G G ++ +A+ FFLYT GS+ ML +I+V+ + S+ + ++ + Q +WI Sbjct: 172 FGHGMDKFRSAFLFFLYTLAGSLPMLLSILVI-YSYFGSTDFQIISLKEISLESQKVLWI 230 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF + A K P++P WLP AH +P AGSV LAG +LK+ YG +R L+ + P A+ Y Sbjct: 231 GFFLALAAKTPLYPVTIWLPKAHSDSPLAGSVILAGTILKLATYGYLRVLINILPDATHY 290 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P++ + +I+I+YASL +++Q D KKLIAYSSIAHMG V +GIFS G+EGA+ Sbjct: 291 FTPIVLTICIISIVYASLSTIIQQDTKKLIAYSSIAHMGVVVLGIFSNTVPGIEGAILLG 350 Query: 334 LSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 + HG VS ALF V GVIYDR+HTR I GLV MP + +FT+AN+G P + + Sbjct: 351 IGHGFVSPALFIMVGGVIYDRVHTRIINYIRGLVTYMPVSTLFFFLFTLANIGTPLSLNY 410 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 +GE L ++ +F+ + +AVL + +VLSA YS++LY ++ +GV ++ +KDL+ RE Sbjct: 411 LGEQLSLIGIFERNPIIAVLGATSIVLSACYSIYLYNRLSYGV-YSPHLEPVKDLNRREF 469 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 ++ + + T+FFGI P I D+ + S Sbjct: 470 NILLALLIPTIFFGIKPGIILDSLHITCS 498 >gi|39998519|ref|NP_954470.1| NADH dehydrogenase I subunit M [Geobacter sulfurreducens PCA] gi|39985466|gb|AAR36820.1| NADH dehydrogenase I, M subunit [Geobacter sulfurreducens PCA] Length = 496 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 182/422 (43%), Positives = 277/422 (65%), Gaps = 8/422 (1%) Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E WI+ F Y LG+DGIS+L+V LT F T +L SW+ I E + L++ES Sbjct: 70 EDAAWIERFGIRYLLGMDGISLLMVALTAFTTVVAMLVSWRGITERATLHYFLILLMESG 129 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI-- 182 ++G FLSLD++LFY+F+E LIPMF +IG+WG RIY+A KFFLYT GS+ ML AI Sbjct: 130 IMGVFLSLDLVLFYLFWEVMLIPMFFLIGIWGHGRRIYSAVKFFLYTLVGSLLMLLAIIG 189 Query: 183 VVMCWEKKTSS---IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 V + T + + L A S + W++ AF +FAIK P+FP HTWLP+AH A Sbjct: 190 VYLIHGDATGTFTFALPLLAKSPIAHAAAPWLFGAFLLAFAIKFPLFPVHTWLPDAHTDA 249 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LA ++LK G YG +RF PLFP A++ F P+++ L++I I+YAS ++ Q D+ Sbjct: 250 PTAGSVILAALLLKTGAYGLVRFGYPLFPEAAKGFTPLLYVLAIIGILYASWIAYAQEDM 309 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+++AYSS+ HMG+V +GI S + G++ QM++HG ++ALF VG++ +R HTR++ Sbjct: 310 KRMVAYSSVGHMGFVALGIASWGPVALSGSILQMVNHGFTTAALFALVGMLDERAHTREV 369 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 A+GGL MP ++ + F MA+ GLPG + F+GEFL+++ VF+ + +A G+VL Sbjct: 370 SAFGGLWGTMPAFSFFFLFFAMASAGLPGLNNFVGEFLILVGVFRITPAAGAIAFLGIVL 429 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 +Y++ L ++V+F + + +L DL+LRE ++ +AV+ ++ G++P P+ D VP Sbjct: 430 PLIYTVRLVQEVLFQTER--RPLRLPDLTLREGAVLAVLAVIDLYIGVHPKPLLDILKVP 487 Query: 480 LS 481 ++ Sbjct: 488 VA 489 >gi|213018787|ref|ZP_03334595.1| NADH dehydrogenase I, M subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995738|gb|EEB56378.1| NADH dehydrogenase I, M subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 375 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 181/375 (48%), Positives = 258/375 (68%), Gaps = 3/375 (0%) Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+LES V+G F+SL+ + FY+FFEA LIPMF IIG+WGG +RIYA +K FLYT G Sbjct: 1 MALFLLLESFVVGFFVSLNAISFYVFFEAVLIPMFFIIGIWGGKQRIYATFKLFLYTLTG 60 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAM-SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 S+ L +V + T +I L + +Q +WI FF SFAIK+PMFPFHTWLP Sbjct: 61 SLLFLLGLVYIYSTFGTFNIQKLATLVPSLDLEVQSLLWITFFISFAIKVPMFPFHTWLP 120 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AHVQ+PT+GSV LAG+++KMGGYG +RF +P+ P AS YF+ + LS+IA+IYASLV+ Sbjct: 121 DAHVQSPTSGSVILAGLLIKMGGYGFLRFSIPMLPQASLYFSNFVVVLSIIAVIYASLVA 180 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 Q DIKKLIAYSSIAHMG VT G+FS + GV G++FQM+SHGL+S+ALF CVG++Y R Sbjct: 181 FAQDDIKKLIAYSSIAHMGIVTAGLFSFCEEGVLGSIFQMISHGLISAALFLCVGMLYTR 240 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 T +I Y G+V+ MP++ + ++F+MA++GLPGTSGF GEFL ++ +F++ Sbjct: 241 TGTLEIAKYFGIVNTMPKFGFMFILFSMASIGLPGTSGFAGEFLAMVGMFKSIGFFTGFI 300 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 + G +LSA+Y L L +++++GVS + + D S+ ++ +AV + G YP Sbjct: 301 ALGTILSAVYMLNLCKQIIWGVSYSKLLNNRLD-SIEFSVLIL-LAVFVILLGFYPTLAL 358 Query: 474 DTFSVPLSSIIENYT 488 + +++++ Y Sbjct: 359 NYLKPCMANLLVKYN 373 >gi|289548989|ref|YP_003473977.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermocrinis albus DSM 14484] gi|289182606|gb|ADC89850.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermocrinis albus DSM 14484] Length = 491 Score = 347 bits (889), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 188/456 (41%), Positives = 284/456 (62%), Gaps = 16/456 (3%) Query: 30 RRSFFGVALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISI 86 R+ F + + S + F+ SL + + F FQ +WI+ S+H+G+DG+ I Sbjct: 23 RKETFSKVISVITSLVVFVLSLILLANFRWEEHQFQHTLRLNWIEPLGISFHIGLDGMGI 82 Query: 87 LLVVLTTFLTPFCILSSWK-SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASL 145 LVVLT + F +++ W +++ Y F++LE+ IG F +LD+ LFY+F+E L Sbjct: 83 SLVVLTALM--FVVVTVWSLKVEDRPNLYYALFMLLETACIGVFSALDLFLFYLFWEGML 140 Query: 146 IPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI---VVMCWEKKTSSIIDLYAMSK 202 IPM+ IIG+WG ++YAA KFF+YTFFGSIF+L I VV + D +S+ Sbjct: 141 IPMYFIIGLWGHDRKVYAANKFFIYTFFGSIFLLLGIASVVVYTYHITGQMTFDYLFLSQ 200 Query: 203 --FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCI 260 +P +Q ++ + FA+K+PM+P HTWLP+AHV+APTAGSV LA ++LKMG +G + Sbjct: 201 VQYPHWLQMIAFLLWGIGFAVKVPMWPVHTWLPDAHVEAPTAGSVILAAVLLKMGTFGFV 260 Query: 261 RFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS 320 R+ LP+FP AS+ F P++FFLS++AIIYA+++++ QT IKKLIAYSSI+HMG VT+G F+ Sbjct: 261 RYSLPMFPEASKEFMPLVFFLSVVAIIYAAMMAIAQTHIKKLIAYSSISHMGMVTLGTFA 320 Query: 321 GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFT 380 G + GA++ M++HGL S+ LF G IYDR+H+ + GGL +P AVV M+ Sbjct: 321 GNMDALNGAIYMMVAHGLASAGLFMAAGFIYDRVHSYHMDDLGGLARYIPNLAVVFMLVG 380 Query: 381 MANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS---- 436 + ++G PG +GF+ EFL++ FQ A LA G++L A Y L+LY++ + Sbjct: 381 LVSIGFPGLAGFVAEFLILFGTFQKYPLWAALAGTGMILGAAYFLYLYKRTMLEEETISE 440 Query: 437 -KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + EK L+DL L + ++ G+YP+P Sbjct: 441 YRREKWSHLRDLELHHWVGFLIVIASSLLLGLYPLP 476 >gi|99034252|ref|ZP_01314312.1| hypothetical protein Wendoof_01000891 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 375 Score = 346 bits (887), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 181/375 (48%), Positives = 258/375 (68%), Gaps = 3/375 (0%) Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 M FL+LES V+G F+SL+ + FY+FFEA LIPMF IIG+WGG R+YA +K FLYT G Sbjct: 1 MALFLLLESFVVGFFVSLNAISFYVFFEAVLIPMFFIIGIWGGKHRVYATFKLFLYTLTG 60 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAM-SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 S+ L +V + T +I L + +Q +WIAFF SFAIK+PMFPFHTWLP Sbjct: 61 SLLFLLGLVYIYNIFGTFNIQKLATLVPSLDLEVQSLLWIAFFISFAIKVPMFPFHTWLP 120 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AHVQ+PT+GSV LAG+++KMGGYG +RF +P+ P AS YF+ + LS+IA+IYASLV+ Sbjct: 121 DAHVQSPTSGSVILAGLLIKMGGYGFLRFSIPMLPQASLYFSNFVVVLSIIAVIYASLVA 180 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 Q DIKKLIAYSSIAHMG VT G+FS + GV G++FQM+SHGL+S+ALF CVG++Y R Sbjct: 181 FAQDDIKKLIAYSSIAHMGIVTAGLFSFCEEGVLGSIFQMISHGLISAALFLCVGMLYTR 240 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 T +I Y G+V+ MP++ + ++F+MA++GLPGTSGF GEFL ++ +F++ Sbjct: 241 TGTLEIAKYFGIVNTMPKFGFMFILFSMASIGLPGTSGFAGEFLAMVGMFKSIGFFTGFI 300 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 + G +LSA+Y L L +++++GVS + + D S+ ++ +AV + G YP Sbjct: 301 ALGTILSAVYMLNLCKQIIWGVSYSKLLNNRLD-SIEFSVLIL-LAVFVILLGFYPTLAL 358 Query: 474 DTFSVPLSSIIENYT 488 + +++++ Y Sbjct: 359 NYLKPCMANLLVKYN 373 >gi|15606525|ref|NP_213905.1| NADH dehydrogenase I chain M [Aquifex aeolicus VF5] gi|2983743|gb|AAC07304.1| NADH dehydrogenase I chain M [Aquifex aeolicus VF5] Length = 491 Score = 346 bits (887), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 195/479 (40%), Positives = 291/479 (60%), Gaps = 20/479 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGRSSFQ 63 L++ FLP +G ++ R F ++ I + + SL ++ FD + FQ Sbjct: 5 LNVAIFLPLVGALLV------AVIRNEIFAKVASILIGAVVALISLVLFVNFDFSKKGFQ 58 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Y WI YH+GVDG++I L+++T+ L + SWK I++ Y FL LE Sbjct: 59 FETYVPWIKTLGIGYHVGVDGMAISLILMTSILFLAAYIWSWK-IEDRPSLYFALFLALE 117 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + IG F +LD+ LFY+F+E LIPM+ IIG WG ++YAA KFFLYTFFGS+F+L I Sbjct: 118 TACIGVFAALDLFLFYLFWEGMLIPMYFIIGFWGHDRKVYAANKFFLYTFFGSLFLLLGI 177 Query: 183 VVMC----WEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + +E S + + +P ++ ++ F FA+KIPM+PFHTWLP+AHV Sbjct: 178 ASILVYGYFETGKISFDYFFHLGLDYPLWLELIAFLLFGIGFAVKIPMWPFHTWLPDAHV 237 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTAGSV LAG++LKMG YG +RF LP FP AS+Y+ P+IF LS++A+IYA+++++ QT Sbjct: 238 EAPTAGSVILAGVLLKMGTYGFVRFSLPFFPEASKYYIPLIFTLSVVAVIYAAMMAIAQT 297 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 +K+LIAYSSI+HMG VT+G F+ + GA++ M++HGL S+ALF G IYDR+H+ Sbjct: 298 HMKRLIAYSSISHMGLVTLGTFAMNSDALNGAIYLMIAHGLSSAALFLGAGFIYDRIHSY 357 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 + GGL +P + + +A + PG + F+ EFL+++ +F+ A +A G+ Sbjct: 358 HMDDLGGLARYIPYFTFAFFLAVLAGIAFPGFASFVSEFLILLGIFEKFPVWAFVAGIGM 417 Query: 418 VLSALYSLWLYRKVVFG-----VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 VL A YSL+++RKV+ + EK ++LKDL L I + + GIYP P Sbjct: 418 VLGAAYSLYMFRKVMLEEESIPEERVEKWKKLKDLELHHAIPFALIIGMALVMGIYPYP 476 >gi|189500530|ref|YP_001960000.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chlorobium phaeobacteroides BS1] gi|189495971|gb|ACE04519.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chlorobium phaeobacteroides BS1] Length = 545 Score = 345 bits (886), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 202/536 (37%), Positives = 304/536 (56%), Gaps = 59/536 (11%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG------- 58 LS++ FLP + +IL + ++ V+L + ++ +W +D Sbjct: 2 LSLIVFLPIIAGLIIL--AVPSSQKQIIRIVSLLAALAQGGLAVLIWQGYDPSLPGITAA 59 Query: 59 -----RSSFQMIEYYHWI-----DYFC---SYHLGVDGISILLVVLTTFLTPFCILSSWK 105 +FQ++E WI D+ Y LGVDGISI +V+LT ++ +LSSW Sbjct: 60 ADGSLNGAFQLVERLPWITLDLGDFGALNIEYFLGVDGISITMVLLTALISIIAVLSSW- 118 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 +I++ + Y I + +L + ++G F++LD LFY+F+E L+PM+ +IG+WGG R YAA Sbjct: 119 TIKKQVKGYFILYNILSTAMMGCFVALDFFLFYVFWELMLLPMYFLIGIWGGPNREYAAI 178 Query: 166 KFFLYTFFGSIFML-------FAIVVMCWEKKTSSIIDLYAMSKF-PFSI--------QY 209 KFFLYT FGS+FML F+++ T S++ + + + P SI +Y Sbjct: 179 KFFLYTLFGSVFMLLVMIGLYFSVIDPLTGNHTFSMVAMASQENYIPGSILGPESTGWRY 238 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 +I F FAIK+PMFPFHTWLP+AHV+APT SV LAG++LK+G YG +R P FP Sbjct: 239 AAFIVLFIGFAIKVPMFPFHTWLPDAHVEAPTPISVILAGVLLKLGTYGMMRINFPFFPE 298 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 Q VI I IIY + ++ Q D+KKL+AYSSI+HMGYV +G+ +G G+ GA Sbjct: 299 VFQASLYVIAVFGAINIIYGAFCALAQQDLKKLVAYSSISHMGYVLLGLAAGNTEGMAGA 358 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 ++QM +HG +++ LF VGVIYDR HTR I +GGL MP YA V+ + A++GLPG Sbjct: 359 LYQMFNHGTITAMLFLLVGVIYDRAHTRQIDKFGGLASYMPVYAGVVTIAWFASLGLPGL 418 Query: 390 SGFIGEFLVIMSVFQNS--NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK-- 445 SGFI E V + F + VA+++ G+VL A Y LW +++ G + V +L Sbjct: 419 SGFISEAFVFVGAFSSELIRNVAIVSVLGIVLGAAYLLWSLQRMFLGTRNPDAVYELHKD 478 Query: 446 ----------------DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 DL RE M+ P+AV+ +F G+YP+P+ + ++ +++ Sbjct: 479 AEGNDRIHFHDWKGKTDLDARELTMLVPLAVIIIFLGVYPMPVLGMITTSINKLVQ 534 >gi|254797043|ref|YP_003081880.1| NADH-quinone oxidoreductase chain m [Neorickettsia risticii str. Illinois] gi|254590282|gb|ACT69644.1| NADH-quinone oxidoreductase chain m [Neorickettsia risticii str. Illinois] Length = 471 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 173/343 (50%), Positives = 244/343 (71%), Gaps = 5/343 (1%) Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 FL+ D+L FYI FE SLIP+F IIG+WGG +R+YAA+K FLYT FGS+ L +I+ + E Sbjct: 124 FLATDLLTFYITFELSLIPIFFIIGLWGGKKRVYAAFKIFLYTLFGSVGFLISILYLFAE 183 Query: 189 KKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T I L + + P + Q +WIAFF +FA+KIPMFP HTWLP+AHVQAPT GSV Sbjct: 184 LGTLEISSLVYLVENTIPIAAQKLIWIAFFLAFAVKIPMFPLHTWLPDAHVQAPTEGSVM 243 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAG+++K+G YG ++ LLP+FP S+ F+ ++ LS IA+IY SLV++ QTDIKKLIAYS Sbjct: 244 LAGVLIKLGTYGMLKVLLPIFPSLSREFSTLVLSLSAIAVIYTSLVALAQTDIKKLIAYS 303 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 SIAHMG VT G+F+ G +GA+FQM+SHGLVSS LFFC+G IYDR TR I + G++ Sbjct: 304 SIAHMGIVTAGLFAFNIEGYKGAVFQMVSHGLVSSGLFFCIGSIYDRSATRQIADHSGIM 363 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 + P+ ++F++A +GLPGT+GF+GEFL + +FQ+ T A+L + GVVL A Y L+ Sbjct: 364 NFAPKLGFAFVLFSLAAIGLPGTAGFVGEFLALTGLFQSRETFAILCATGVVLGACYMLY 423 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L +++++G + + +D+ L E + + +L +F G++P Sbjct: 424 LCKRIIWGTPEG---KIFRDIHLHESIPLITLIILVMFLGLHP 463 >gi|145298712|ref|YP_001141553.1| NADH dehydrogenase subunit M [Aeromonas salmonicida subsp. salmonicida A449] gi|142851484|gb|ABO89805.1| NADH dehydrogenase I, M subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 506 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 190/433 (43%), Positives = 274/433 (63%), Gaps = 13/433 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S HL VDG+S+L+V+LT F+ IL SWK I + + + L + V+G Sbjct: 71 WIPRFGISLHLAVDGLSLLMVMLTCFIGVLAILCSWKEIVQRIGFFHLNLLWILGGVLGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 F+++D+ LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FMAVDLFLFFFFWEMMLVPMYFLIALWGHSVTDGKSRINAATKFFIYTQVSGLIMLVAIL 190 Query: 184 --VMCWEKKTSSIIDLYA-MSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 V+ T YA + P S +Q+ + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVLTHHAATGVFTFNYADLLHTPMSTGVQWLLMLGFFIAFAVKMPLVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP L LI IIY +LV+ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFALPLFPEASAEFAPYAMALGLIGIIYGALVAFAQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+L+AY+SI+HMG+V I I+SG + ++GA+ QM++HGL ++ LF G +Y+RLHTRD Sbjct: 311 IKRLVAYTSISHMGFVMIAIYSGSELALQGAVVQMIAHGLSAAGLFILCGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + VM+ F++A++G+PGT F+GEFL+++ FQ + + V+A+FG+V Sbjct: 371 LRLMGGLWGRLRYLPGVMLFFSVASLGMPGTGNFVGEFLILIGSFQVAPVITVIATFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L+++YSL + ++ FG K LK L RE M+ +A L + G+YP PI DT Sbjct: 431 LASVYSLIMLQRACFGAPK--DTTMLKGLDRRELVMMMTMAGLLILLGVYPQPILDTAGS 488 Query: 479 PLSSIIENYTLKT 491 L S++ Y L + Sbjct: 489 SLMSVLHWYALPS 501 >gi|283852198|ref|ZP_06369471.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio sp. FW1012B] gi|283572424|gb|EFC20411.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio sp. FW1012B] Length = 526 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 182/411 (44%), Positives = 262/411 (63%), Gaps = 2/411 (0%) Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 +FQ +E W+ +YHLG+DG+S+ +V+LT + P C+L SW I + E+ L Sbjct: 61 AFQFVEKAQWLPAMGMTYHLGLDGLSLYMVLLTALMLPLCVLGSWTYISKRVTEFHFCLL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++ S IG F +LD +LFY+F+EA L+PM+++I VWGG R YA+ KFFLYT GS +L Sbjct: 121 LMTSACIGVFAALDFVLFYVFWEAMLVPMYLLIAVWGGPRRRYASIKFFLYTLAGSTLLL 180 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AIV T SI +L S + F Q W ++A +FAIK+PMFPFHTWLP AHV+A Sbjct: 181 AAIVAFRQVGGTFSIPELMEKS-YSFKFQIWAFLAMALAFAIKVPMFPFHTWLPAAHVEA 239 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGSV LA I+LKMG YG +RF LPL P AS AP++ +S+ +I+Y +++ QTDI Sbjct: 240 PAAGSVLLAAILLKMGTYGFLRFCLPLTPAASVTAAPIMIAISVASILYGGCIALGQTDI 299 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+ HMG+VT+GIF GV GA+ QML+HG+ + LF VG++Y+R H+R+I Sbjct: 300 KKLIAYSSVGHMGFVTLGIFLLSVKGVSGAILQMLNHGITTGGLFMMVGLLYERSHSREI 359 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL MP + + +F+ +++ PGT+ F+GE LV++ F + + A G +L Sbjct: 360 VDNQGLGKFMPAFMFLFGLFSFSSLAFPGTNSFVGEILVLIGAFAGNPWIGFAAVPGAML 419 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 +A Y L L ++V +G K +DL +RE + P+A+L + G+ P Sbjct: 420 AAAYMLRLLQRVTWGEPSSFKKGSWRDLGVREWLTLAPLALLVFYIGLAPA 470 >gi|49147204|ref|YP_025797.1| NADH dehydrogenase subunit 4 [Pseudendoclonium akinetum] gi|33439219|gb|AAQ18756.1| NADH dehydrogenase subunit 4 [Pseudendoclonium akinetum] Length = 548 Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 201/497 (40%), Positives = 297/497 (59%), Gaps = 45/497 (9%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQ---MIEYYH----------------------W 70 +AL +S I F+ SL +W +FD + FQ +I + W Sbjct: 53 IALNVSLITFLLSLALWVLFDPLTADFQFRSLINFQQEKLDTATTLHSLQGLLDNKALDW 112 Query: 71 ID----------YFCSYHLGVDGISILLVVLTTFLTPFCILSSWK---SIQ----ENFRE 113 + + S+ G+DGIS+ LV+LTTFLTP CIL W S+Q + Sbjct: 113 NNASIFETVGNLFNFSFSFGIDGISLWLVLLTTFLTPICILVGWALPASLQIKGPHYLKI 172 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTF 172 Y I FL++ES+++ F D+L+FYIFFEA LIPMF++IG++G R I AAYK FLYT Sbjct: 173 YCIIFLIIESLLLVVFCVRDLLVFYIFFEAVLIPMFLLIGLFGSQPRNIRAAYKMFLYTL 232 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 GS+ ML I+++ ++ ++ + + S F + Q +W FF SFA+K P+ PFH WL Sbjct: 233 AGSLPMLVGILLIYFQCGSTDW-SILSTSYFSPTRQLILWALFFFSFAVKAPLVPFHGWL 291 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P H APTAGS+ LAGI+LK+G YG +R+ + LFPLAS YFAP+++ + L+ ++Y SL+ Sbjct: 292 PETHSNAPTAGSIVLAGILLKLGTYGFLRWSVTLFPLASVYFAPIVYIICLVGVVYVSLI 351 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q D+KKLIAYSS++HM +G+F+ G+EG++ M++HG+VS LF C+G++YD Sbjct: 352 TLRQIDVKKLIAYSSVSHMALCLLGMFAFNVQGLEGSLLMMVAHGIVSPGLFLCIGILYD 411 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS-GFIGEFLVIMSVFQNSNTVAV 411 R TR I YGGL MP A M++ M N+ LP S F E L+ VF + VA+ Sbjct: 412 RYKTRVIQYYGGLAMTMPILATSMLILIMGNLSLPILSPSFGAELLIFTGVFLVNRLVAI 471 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A +VL+A YSL+L+ +V FG K + Q D+S RE ++P L++ GI+P Sbjct: 472 IAISTMVLTAAYSLFLFSRVFFGNLKTVYISQFSDVSRREFFCLFPFLALSLLLGIFPAL 531 Query: 472 IRDTFSVPLSSIIENYT 488 + DT V ++ I+ +Y Sbjct: 532 VLDTCHVSIAYILVSYN 548 >gi|158317824|ref|YP_001510332.1| proton-translocating NADH-quinone oxidoreductase, chain M [Frankia sp. EAN1pec] gi|158113229|gb|ABW15426.1| proton-translocating NADH-quinone oxidoreductase, chain M [Frankia sp. EAN1pec] Length = 519 Score = 343 bits (879), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 173/433 (39%), Positives = 279/433 (64%), Gaps = 13/433 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 +D ++ FQ + Y WI F SY +G DGIS++L++L L P +LSSW +E R Sbjct: 54 YDPDKAGFQFGQSYDWIKEFGVSYSVGADGISLVLMLLAALLVPVVVLSSWDEAEEGRRS 113 Query: 114 ---YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG----GSERIYAAYK 166 + L LE+ ++G F + D+ LFY+FFEA LIPM+ +IG +G ++R YAA K Sbjct: 114 VPAFFALLLALETGMVGVFAATDVFLFYVFFEAMLIPMYFLIGSYGPVEEKAQRSYAAVK 173 Query: 167 FFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAI 221 F LY+ FG + ML A++ V+ ++ + D + + + +Q +++ FF +FAI Sbjct: 174 FLLYSLFGGLLMLAAVIGLYVVSADQLGTGTFDFATLRQLEITPGVQKLLFLGFFIAFAI 233 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K P+FPFHTWLP+A Q+PT G+V L G++ K+G +G IR+ +PLFP A++YFAP++ L Sbjct: 234 KAPLFPFHTWLPDAGAQSPTGGAVLLVGVLDKVGTFGLIRYCIPLFPDAAEYFAPMVLAL 293 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 ++I I Y +L+++ Q D+K+L+AY+S+AH G++ +G F+ GA+ M++HGL + Sbjct: 294 AVIGIFYGALLAIGQRDMKRLVAYTSLAHFGFIALGTFAFTSQAGTGAVLYMVNHGLSTG 353 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 LF VG + R +RD+ AYGG+ P A V ++ ++++ LPGT+ F+ EFLV++ Sbjct: 354 LLFVVVGFLVARRGSRDVSAYGGMAQVTPILAGVFLIAGLSSLALPGTNSFVSEFLVLVG 413 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F +A++A+ G+VL+A+Y L+LY++ + G K EK++ +KDLS+RER +V P+ L Sbjct: 414 TFTEYRALAIVATCGIVLAAIYILYLYQRTMTGPVKDEKMRLIKDLSVRERVVVAPMVAL 473 Query: 462 TVFFGIYPVPIRD 474 + G+YP P+ D Sbjct: 474 IIGLGVYPKPLLD 486 >gi|78186627|ref|YP_374670.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chlorobium luteolum DSM 273] gi|78166529|gb|ABB23627.1| NADH dehydrogenase subunit M [Chlorobium luteolum DSM 273] Length = 545 Score = 343 bits (879), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 199/536 (37%), Positives = 300/536 (55%), Gaps = 59/536 (11%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG------- 58 LS++ FLP + VIL + ++ V+L + + + ++ +W +D Sbjct: 2 LSLIVFLPIIAGLVIL--AVPSSQKQIIRMVSLLAAVVQMVLAVMIWQGYDPSLAGITAV 59 Query: 59 -----RSSFQMIEYYHWIDY--------FCSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 SFQ IE WI Y LGVDG+SI +V+LT ++ +LSSW Sbjct: 60 AGGSPEGSFQFIERLPWISLDLGSMGSMNIEYFLGVDGLSITMVILTALVSTIGVLSSW- 118 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 +IQ+ + Y + + +L + ++G F++LD LFY+F+E L+PM+ +IG+WGG R YAA Sbjct: 119 TIQKQVKGYFLLYNLLATAMMGCFVALDFFLFYVFWELMLLPMYFLIGMWGGPNREYAAI 178 Query: 166 KFFLYTFFGSIFMLFAIVVMCWE-------KKTSSIIDLYAMSKFPFSI------QYWMW 212 KFFLYT FGS+FML ++ + + T S++ + + + W Sbjct: 179 KFFLYTLFGSVFMLLVMIALYFSVIDPLTGNHTFSLVAMASQENYIHDAILGPDNAMWRT 238 Query: 213 IAF---FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 +AF F FAIK+PMFPFHTWLP+AHV+APT SV LAG++LK+G YG +R PLFP Sbjct: 239 VAFIVLFIGFAIKVPMFPFHTWLPDAHVEAPTPISVILAGVLLKLGTYGMMRINFPLFPE 298 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 Q VI I IIY + ++ Q D+KK++AYSSI+HMGYV +G+ +G G+ GA Sbjct: 299 VFQASMYVIGVFGAINIIYGAFCALAQKDLKKMVAYSSISHMGYVLLGLAAGNSEGMTGA 358 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 ++QM +HG +++ LF VGVIYDR HTR I +GGL MP Y V+M+ A++GLPG Sbjct: 359 LYQMFNHGTITAMLFLLVGVIYDRAHTRQIEKFGGLATYMPVYFGVVMIAWFASLGLPGL 418 Query: 390 SGFIGEFLVIMSVFQNSNT--VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK-- 445 SGFI E V + F T +A+++ G+V A Y LW +++ G + + ++ Sbjct: 419 SGFISEAFVFVGAFSAEVTRPIAIVSVLGIVFGAAYLLWSLQRMFLGKRREDAAYDVEIG 478 Query: 446 ----------------DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 DL RE M+ P+AV+ +F GIYP+PI + ++ +++ Sbjct: 479 ADGHEHIHFHDWKGKLDLDARELAMLVPLAVIIIFLGIYPMPIMGLMTTSINKLVQ 534 >gi|145219891|ref|YP_001130600.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prosthecochloris vibrioformis DSM 265] gi|145206055|gb|ABP37098.1| NADH dehydrogenase subunit M [Chlorobium phaeovibrioides DSM 265] Length = 545 Score = 343 bits (879), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 201/537 (37%), Positives = 302/537 (56%), Gaps = 61/537 (11%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG------- 58 LS++ FLP + +IL + ++ V+L + + + ++ +W +D Sbjct: 2 LSLIVFLPVIAGLIIL--AVPSSQKQIIRIVSLLAAVVQMVLAVMIWRGYDPSLAGITAM 59 Query: 59 -----RSSFQMIEYYHWIDY--------FCSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 SFQ IE WI Y LGVDG+SI +V+LT ++ +LSSW Sbjct: 60 AGGMPEGSFQFIERLPWISLDLGNMGSMNIEYFLGVDGLSITMVILTALVSTIGVLSSW- 118 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 +I++ + Y + + +L + ++G F++LD LFY+F+E L+PM+ +IG+WGG R YAA Sbjct: 119 TIKKQVKGYFLLYNLLATAMMGCFVALDFFLFYVFWELMLLPMYFLIGIWGGPNREYAAI 178 Query: 166 KFFLYTFFGSIFML-------FAIVVMCWEKKTSSIIDLYAMSKF-------PFSIQYWM 211 KFFLYT FGS+FML F+++ T S++ + + + P + W Sbjct: 179 KFFLYTLFGSVFMLLVMIGLYFSVIDPLTGNHTFSLVAMASQENYIKDAILGPDN-AMWR 237 Query: 212 WIAF---FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 ++AF F FAIK+PMFPFHTWLP+AHV+APT SV LAG++LK+G YG +R PLFP Sbjct: 238 YVAFIVLFIGFAIKVPMFPFHTWLPDAHVEAPTPISVILAGVLLKLGTYGMMRINFPLFP 297 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 Q VI I IIY + ++ Q D+KK++AYSSI+HMGYV +G+ + G+ G Sbjct: 298 EVFQASMYVIGVFGAINIIYGAFCALAQQDLKKMVAYSSISHMGYVLLGLAAANSEGMTG 357 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 A++QM +HG +++ LF VGVIYDR HTR I +GGL MP YA ++ V A++GLPG Sbjct: 358 ALYQMFNHGTITAMLFLLVGVIYDRAHTRQIDKFGGLASYMPVYAGIVTVAWFASLGLPG 417 Query: 389 TSGFIGEFLVIMSVFQNSNT--VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK- 445 SGFI E V + F + T +A+++ G+V A Y LW +++ G K + L Sbjct: 418 LSGFISEAFVFVGAFSSETTRYIAMVSVLGIVFGAAYLLWSLQRMFLGKRKDDAAYDLVT 477 Query: 446 -----------------DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 DL RE M+ P+ V+T+F GIYP+PI + ++ ++E Sbjct: 478 GPDGQEQIHFHDWNGKLDLDGRELAMLIPLVVITIFLGIYPMPIMGLMTTTVNHLVE 534 >gi|78188621|ref|YP_378959.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chlorobium chlorochromatii CaD3] gi|78170820|gb|ABB27916.1| NADH dehydrogenase subunit M [Chlorobium chlorochromatii CaD3] Length = 544 Score = 342 bits (878), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 197/537 (36%), Positives = 304/537 (56%), Gaps = 61/537 (11%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS----- 60 LS++ FLP + +IL + ++ V+L + + + ++ +W +D + Sbjct: 2 LSLIVFLPLIAGLIIL--AVPASQKQVIRIVSLLAALVQMVLAVMIWRDYDPSLAGITAG 59 Query: 61 -------SFQMIEYYHWIDY--------FCSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 SFQ +E WI Y LGVDG+SI +++LT ++ +LSSW Sbjct: 60 AGGTLAGSFQFVERLPWISLDLGSFGPLTIEYFLGVDGLSITMIILTALVSAIGVLSSW- 118 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 +IQ+ + Y I + +L + ++G F++LD LFY+F+E L+PM+ +IG+WGG R YAA Sbjct: 119 TIQKQVKGYFILYNILATAMMGCFVALDFFLFYVFWEVMLLPMYFLIGIWGGPNREYAAI 178 Query: 166 KFFLYTFFGSIFML-------FAIVVMCWEKKTSSIIDLYAMSKF-------PFSIQYWM 211 KFFLYT FGS+FML F+++ T S++ + + + P S+ +W Sbjct: 179 KFFLYTLFGSVFMLLVMIGLYFSVIDPLTGNHTFSLVAMASQENYVKGAILGPDSV-FWR 237 Query: 212 WIAF---FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 + AF F FAIK+PMFPFHTWLP+AHV+APT SV LAG++LK+G YG +R PLFP Sbjct: 238 YAAFIVLFVGFAIKVPMFPFHTWLPDAHVEAPTPISVILAGVLLKLGTYGMMRINFPLFP 297 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 Q VI I IIY + ++ Q D+KK++AYSSI+HMGYV +G+ +G G+ G Sbjct: 298 EVFQASLYVIGIFGAINIIYGAFCALAQKDLKKMVAYSSISHMGYVLLGLAAGNSEGMLG 357 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 A++QM +HG +++ LF VGVIYDR H+R I +GGL MP YA + V A++GLPG Sbjct: 358 ALYQMFNHGTITAMLFLLVGVIYDRAHSRQIEKFGGLATYMPVYAAFVTVAWFASLGLPG 417 Query: 389 TSGFIGEFLVIMSVFQNSNT--VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK- 445 SGFI E V + F T +A+++ G+V A Y LW +++ G + + + + Sbjct: 418 LSGFISEAFVFVGAFSAEVTRPIAIVSVLGIVFGAAYLLWSLQRMFLGQRRADALYDVVE 477 Query: 446 -----------------DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 DL RE M+ P+ ++T+F G+YP+PI + ++ +++ Sbjct: 478 DEHGHKHIHFHDWNGKLDLDARELTMLVPLVIITIFLGVYPMPIMGLLTSSINKLVQ 534 >gi|330830056|ref|YP_004393008.1| proton-translocating NADH-quinone oxidoreductase subunit M [Aeromonas veronii B565] gi|328805192|gb|AEB50391.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Aeromonas veronii B565] Length = 514 Score = 342 bits (878), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 193/436 (44%), Positives = 280/436 (64%), Gaps = 19/436 (4%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S HL VDG+S+L+V+LT F+ IL SWK I + + + L + V+G Sbjct: 79 WIPRFGISLHLAVDGLSLLMVILTCFIGVLAILCSWKEIVQRIGFFHLNLLWILGGVLGV 138 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 F++LD+ LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 139 FMALDLFLFFFFWEMMLVPMYFLIALWGHSVTDGKSRINAATKFFIYTQVSGLIMLVAII 198 Query: 184 --VMCWEKKTS----SIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 V+ + T + +DL MSK +Q+ + + FF +FA+K+P+ P H WLP+A Sbjct: 199 GLVLTHQHATGVFTFNYLDLLNTPMSK---GVQWLLMLGFFIAFAVKMPLVPLHGWLPDA 255 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP L LI I+Y +LV+ Sbjct: 256 HSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPEASAEFAPYAMVLGLIGIVYGALVAFA 315 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTDIK+L+AY+SI+HMG+V I I+SG + ++GA+ QM++HGL ++ LF G +Y+RLH Sbjct: 316 QTDIKRLVAYTSISHMGFVMIAIYSGSELALQGAVVQMIAHGLSAAGLFILCGQLYERLH 375 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TRD+ GGL + VM+ F++A++G+PGT F+GEFL+++ FQ + + +A+F Sbjct: 376 TRDLRQMGGLWGRLRYLPGVMLFFSVASLGMPGTGNFVGEFLILVGSFQVAPVITAVATF 435 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G+VL+++YSL + ++ FG +K E + LK L RE M+ IA L V G+YP P+ DT Sbjct: 436 GLVLASVYSLIMLQRACFGPAKDESM--LKGLDRRELTMMMVIAGLLVLLGLYPQPVIDT 493 Query: 476 FSVPLSSIIENYTLKT 491 S L +++ Y L T Sbjct: 494 ASSSLINVLHWYLLPT 509 >gi|194333684|ref|YP_002015544.1| proton-translocating NADH-quinone oxidoreductase subunit M [Prosthecochloris aestuarii DSM 271] gi|194311502|gb|ACF45897.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prosthecochloris aestuarii DSM 271] Length = 545 Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 202/539 (37%), Positives = 302/539 (56%), Gaps = 65/539 (12%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG----- 58 LS++ FLP + +I+ SS R ALG + + F+W +D Sbjct: 2 LSLIVFLPIIAGLIIVAVPSSQKQVIRLVSLFAALG----QCVLAYFIWQGYDPSMPGII 57 Query: 59 -------RSSFQMIEYYHWIDY--------FCSYHLGVDGISILLVVLTTFLTPFCILSS 103 SFQ +E WI Y LGVDG+SI +++LT ++ +LSS Sbjct: 58 AGPGGSLDGSFQFVERLPWISLDLGNLGSLNIEYFLGVDGLSITMIILTALISTIGVLSS 117 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYA 163 W +I++ + Y I F +L + ++G F++LD LFY+F+E L+PM+ +IG+WGG R YA Sbjct: 118 W-TIKKQIKGYFILFNILSTAMMGCFVALDFFLFYVFWELMLLPMYFLIGIWGGPNREYA 176 Query: 164 AYKFFLYTFFGSIFML-------FAIVVMCWEKKTSSIIDLYAMSKF-------PFSIQY 209 A KFFLYT FGS+FML F+++ T S++ + + + P S+ Sbjct: 177 AIKFFLYTLFGSVFMLLVMIALYFSVIDPATGNNTFSLVAMASQENYIPGSILGPESVT- 235 Query: 210 WMWIAF---FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 W ++AF F FAIK+PMFPFHTWLP+AHV+APT SV LAG++LK+G YG +R PL Sbjct: 236 WRYVAFIVLFIGFAIKVPMFPFHTWLPDAHVEAPTPISVILAGVLLKLGTYGMMRINFPL 295 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 FP Q VI I IIY + ++ Q D+KKL+AYSSI+HMGYV +G+ + G+ Sbjct: 296 FPEVFQASLYVIGVFGAINIIYGAFCALAQQDLKKLVAYSSISHMGYVLLGLAAANTEGM 355 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 GA++QM +HG +++ LF VGVIYDR HTR I +GGL MP YA V+ + A++GL Sbjct: 356 TGALYQMFNHGTITAMLFLLVGVIYDRAHTRSIDKFGGLATYMPVYAGVVTIAWFASLGL 415 Query: 387 PGTSGFIGEFLVIMSVFQN--SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL 444 PG SGFI E V + F + + +A+++ G+V A Y LW +++ G + V +L Sbjct: 416 PGLSGFISEAFVFVGAFSSEVTRNIAIVSVLGIVFGAAYLLWSLQRMFLGKRNPDAVYEL 475 Query: 445 K------------------DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + DL RE M+ P+A++ + G+YP+P+ + ++ ++E Sbjct: 476 QTGDDGHEHIHFHDWTGKNDLDGRELTMLVPLALIIIILGVYPMPVLGLMTTSINKLVE 534 >gi|164421181|ref|YP_001648567.1| NADH dehydrogenase subunit 4 [Ptilocaulis walpersi] gi|158938963|gb|ABW83888.1| NADH dehydrogenase subunit 4 [Ptilocaulis walpersi] Length = 481 Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 193/420 (45%), Positives = 271/420 (64%), Gaps = 8/420 (1%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI----DYFCSYHLGVDGISILLVVLT 92 AL S + ++ +W FD G+ FQ WI F VDGISI ++LT Sbjct: 31 ALEWSLLTLTATIILWISFD-GQGQFQSFIIIDWIFSIEPQFNPIFFAVDGISIFFLILT 89 Query: 93 TFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 LT C+L SWKSI+ +E+++ V+E ++IG F LD++ FYI FE LIPMF+II Sbjct: 90 ALLTSICVLISWKSIKFLIKEFLLCLFVIELLLIGVFTILDLVGFYILFEGILIPMFLII 149 Query: 153 GVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM 211 G+WG E+I A+Y FF +TF GS+FML AI + T++ L + +QY++ Sbjct: 150 GIWGSREEKIQASYYFFFFTFIGSVFMLLAIFSLYTYVGTTNYQALCCV-LIDKKLQYFI 208 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 ++ FF S AIKIP PFH WLP AHV+AP AGSV LAG++LK+GGYG IRF PL AS Sbjct: 209 FLGFFFSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLSEAS 268 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 ++F+P+I LSL+AIIYASL + Q D+K++IAYSS+AHMG VT+GIF+ +G+ A+F Sbjct: 269 EFFSPLILTLSLLAIIYASLTTCRQVDLKRIIAYSSVAHMGLVTLGIFTHTLTGLVAAIF 328 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 ML+HGLVSSALF V +Y+R HTR + Y G+ +MP ++ ++ +AN +P + Sbjct: 329 LMLAHGLVSSALFIIVTFLYERFHTRLVKYYRGVSISMPLFSFYFLLLILANSSIPLSCN 388 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 F+GEF +++ F S V VLAS G++LSA YS++LY +V FG+ + +DL+ RE Sbjct: 389 FVGEFFSLIAAFDYSYLVGVLASLGIILSASYSIYLYNRVCFGIPS-NYLYFPRDLNRRE 447 >gi|117618096|ref|YP_856307.1| NADH dehydrogenase subunit M [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559503|gb|ABK36451.1| NADH-quinone oxidoreductase chain m [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 506 Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 188/431 (43%), Positives = 275/431 (63%), Gaps = 13/431 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S HL VDG+S+L+V+LT F+ IL SWK I + + + L + V+G Sbjct: 71 WIPRFGISLHLAVDGLSLLMVILTCFIGVLAILCSWKEIVQRIGFFHLNLLWILGGVLGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 F++LD+ LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FMALDLFLFFFFWEMMLVPMYFLIALWGHSVTDGKSRINAATKFFIYTQVSGLIMLVAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + ++ + D + P S +Q+ + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVLTHHAATGVFTFDYQDLLNTPMSKGVQWLLMLGFFIAFAVKMPLVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP L LI I+Y ++V+ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFALPLFPEASAEFAPYAMVLGLIGIVYGAIVAFAQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+L+AY+SI+HMG+V I I+SG + ++GA+ QM++HGL ++ LF G +Y+RLHTRD Sbjct: 311 IKRLVAYTSISHMGFVMIAIYSGSELALQGAVVQMIAHGLSAAGLFILCGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + VM+ F++A++G+PGT F+GEFL+++ FQ + + ++A+FG+V Sbjct: 371 LRLMGGLWGRLRYLPGVMLFFSVASLGMPGTGNFVGEFLILIGSFQVAPVLTIIATFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L+++YSL + ++ FG K E V LK L RE M+ IA L V G+YP P+ DT Sbjct: 431 LASVYSLIMLQRACFGTPKDESV--LKGLDSRELVMMMTIAGLLVLLGVYPQPVLDTAGN 488 Query: 479 PLSSIIENYTL 489 L S++ Y L Sbjct: 489 SLLSVLHWYAL 499 >gi|49147014|ref|YP_025864.1| NADH dehydrogenase subunit 4 [Moniliophthora perniciosa] gi|34538659|gb|AAQ74267.1| NADH dehydrogenase subunit 4 [Moniliophthora perniciosa] Length = 485 Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 193/453 (42%), Positives = 295/453 (65%), Gaps = 9/453 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTT 93 +AL S INF SLF+W FD + +Q + ++ ++ YHL GVD IS+ V+LTT Sbjct: 31 IALTTSLINFFISLFMWYQFDSNITQYQFVTEFNHLNL---YHLNFGVDSISLYFVLLTT 87 Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 F+TP +LS++ +I N + ++I+FL+LES+ I AF+SLD+LLFYIFFE+ L +F++I Sbjct: 88 FVTPIALLSNYTNITNNLKVFLISFLILESLQICAFVSLDLLLFYIFFESVLPVLFIVIV 147 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMW 212 ++G G++R +A FFLYT GS+ ML +I+ + + S+ L ++ + Q +W Sbjct: 148 IFGHGADRYRSALLFFLYTLAGSLPMLLSILTI-YSYIGSTDFQLLSLYEINTDFQKILW 206 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 + FF FA+K P++PF WLP AH + AGS+ LA +LK+ YG +R L+ P A+ Sbjct: 207 LGFFIGFAVKTPLYPFIIWLPKAHADSVLAGSILLAATILKLATYGMLRVLINFLPDATH 266 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 YF+P++ + +I+IIY+S ++VQ D K+LIAYSSIAHMG V +G+FS G+EGA+ Sbjct: 267 YFSPLVQTICIISIIYSSFSTIVQQDTKRLIAYSSIAHMGVVVLGLFSNTIQGIEGAILL 326 Query: 333 MLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 ++HG VS ALF CV G+IYDR HTR I GLV MP + ++ VFT+AN G+P T Sbjct: 327 SIAHGFVSPALFICVGGIIYDRTHTRIINYIKGLVTYMPVFTILFFVFTLANTGIPLTLN 386 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 F+GE L ++ +F+ + A+L + +VLSA YSL+LY ++ +G S + LKD++ RE Sbjct: 387 FLGEQLSLLGIFEKNPITAILGATSIVLSACYSLFLYNRLSYG-SYSLHLAILKDINRRE 445 Query: 452 RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 ++ + + T+ GI+P I DT + +SS++ Sbjct: 446 FFLLLALLIPTILLGIFPNVILDTLHISVSSLL 478 >gi|291298810|ref|YP_003510088.1| proton-translocating NADH-quinone oxidoreductase chain M [Stackebrandtia nassauensis DSM 44728] gi|290568030|gb|ADD40995.1| proton-translocating NADH-quinone oxidoreductase, chain M [Stackebrandtia nassauensis DSM 44728] Length = 509 Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 185/503 (36%), Positives = 300/503 (59%), Gaps = 15/503 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+LS V +P +G + +S + +ALG S ++ W+ +D G + Q Sbjct: 5 PYLSAVIVVPLIGALIT--ASVPKGKPKQAKAIALGFSLAVAAITVGAWASYDTGDTGMQ 62 Query: 64 MIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF-LVL 121 + E+Y W+ + + G+DGI+++++ LT LTP IL+SW + + A L L Sbjct: 63 LTEHYSWVPAWGLNLSFGMDGIALVMLALTALLTPIVILASWNDAHKRNQPTFFALILAL 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ++ +IG F+S ++LLFYIFFE L+PM+ +IG +GG R YAA KFFLY+ G + +L A Sbjct: 123 QATMIGTFISTNVLLFYIFFEVMLVPMYFLIGSYGGKRRQYAAVKFFLYSLLGGMVLLAA 182 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 I+ + W T + D ++ SI Q W+++ FF +FAIK P FPFHTWLP+A Sbjct: 183 IIGL-WVT-TGGVFDFATLTDGKHSIAEGTLQNWLFLGFFIAFAIKAPFFPFHTWLPDAG 240 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 AP + L G+M K+G + +R+ LPLFP ASQ FAP+ L+L+ +IY +LV++ Q Sbjct: 241 GAAPAGIAALLVGVMDKIGTFAILRYCLPLFPDASQLFAPLAIALALVGVIYGALVAIGQ 300 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+++L+AY+SIAH G++ +GIF+ GA+ M++HGL + LF VG++ R + Sbjct: 301 KDLRRLVAYTSIAHFGFIGVGIFAFTTESASGAVLYMVNHGLATGLLFIVVGMLATRRGS 360 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 DI +GG +P A + +A++ LPGT+ F+ EFL+++ + + VAV+A+ G Sbjct: 361 SDIADFGGAGKTLPLLAGTFFIAGLASLALPGTAPFVSEFLILLGTYSANKPVAVIATLG 420 Query: 417 VVLSALYSLWLYRKVVFGV--SKCEKVQQLK-DLSLRERCMVYPIAVLTVFFGIYPVPIR 473 V+L+A Y LW+Y++ + G K + V +K DL+LRE+ +V P+ V + G+YP P+ Sbjct: 421 VILAAAYVLWMYQRTMQGTVNVKLDGVPAMKRDLNLREKLVVAPLIVGILALGVYPQPVL 480 Query: 474 DTFSVPLSSIIENYTLKTGYSDS 496 D + + +++ + TG +D Sbjct: 481 DVINPAVEHTLDSVGV-TGSADQ 502 >gi|322422444|ref|YP_004221870.1| NADH dehydrogenase subunit 4 [Penicillium digitatum] gi|316891698|gb|ADU57306.1| NADH dehydrogenase subunit 4 [Penicillium digitatum] Length = 488 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 196/456 (42%), Positives = 289/456 (63%), Gaps = 9/456 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL + IN I SL ++ +FD FQ IE ++ + YF Y LGVDG+SI ++LTT + Sbjct: 35 IALTTTIINLIVSLIMFILFDFSSKQFQFIEEHYQVSYFDVY-LGVDGLSIYFILLTTII 93 Query: 96 TPFCILSSWKSIQ-ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 P ILS+W SIQ +N +++ L+LE++++ FL LD+LLFYIFFE+ L P+F++IG+ Sbjct: 94 MPVAILSNWNSIQSQNVLSFVVIMLLLETLLLAVFLVLDILLFYIFFESILPPLFLLIGL 153 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMW 212 +G S ++ A++ FLYT FGS+FML +I+VM T+ DL A+SK FS Q +++ Sbjct: 154 FGSSNKVRASFYLFLYTLFGSLFMLLSIIVMSSIMGTT---DLDALSKANFSYITQLFLF 210 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 F SFA+K P+ +TWL AHV++P +GS+ LAGI+LK+ YG R +LPL P AS Sbjct: 211 YGIFISFAVKTPVIFLNTWLLKAHVESPLSGSIILAGIVLKLSLYGIFRLMLPLLPKASL 270 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 F +I+ + +I IIYAS ++ DIK+LIAYSS++H IG FS G+EGA+ Sbjct: 271 NFTYIIYVIGVITIIYASFSTLRTIDIKELIAYSSVSHAAVYLIGAFSNTIQGIEGAIVL 330 Query: 333 MLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 L+HG VS ALF C G++YDR TR I Y G+ MP ++++ + + N G P T Sbjct: 331 GLAHGFVSPALFICAGGILYDRSSTRLITYYRGMAQIMPIFSILFFILCLGNSGTPLTLN 390 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS-KCEKVQQLKDLSLR 450 FIGEF+ + F+ + +LAS +VLSA Y++++Y ++ FG S V+ + D++ R Sbjct: 391 FIGEFMSLYGAFERMPILGILASTSIVLSAAYTIFMYNRIAFGGSYSVYFVENIGDVTRR 450 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 E ++ + TV FGIYP PI D +SS+I N Sbjct: 451 EFILLLVFVIFTVLFGIYPAPILDGLHYSVSSLIYN 486 >gi|330339455|ref|YP_004376363.1| NADH dehydrogenase subunit 4 [Moniliophthora roreri] gi|308912822|gb|ADO51569.1| NADH dehydrogenase subunit 4 [Moniliophthora roreri] Length = 485 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 193/453 (42%), Positives = 295/453 (65%), Gaps = 9/453 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTT 93 +AL S INF SLF+W FD + +Q + ++ ++ YHL GVD IS+ V+LTT Sbjct: 31 IALTTSLINFFISLFMWYQFDSNITQYQFVTEFNHLNL---YHLNFGVDSISLYFVLLTT 87 Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 F+TP +LS++ +I N + ++I+FL+LES+ I AF+SLD+LLFYIFFE+ L +F++I Sbjct: 88 FVTPIALLSNYTNITNNLKVFLISFLILESLQICAFVSLDLLLFYIFFESVLPVLFIVIV 147 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMW 212 ++G G ++ +A FFLYT GS+ ML +I+ + + S+ L ++ + Q +W Sbjct: 148 IFGHGQDKYRSALLFFLYTLAGSLPMLLSILTI-YSYIGSTDFQLLSLYEINSDFQKVLW 206 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 + FF FA+K P++PF WLP AH + AGS+ LA +LK+ YG +R L+ FP A+ Sbjct: 207 LGFFIGFAVKTPLYPFIIWLPKAHADSVLAGSILLAATILKLATYGYLRVLINFFPDATH 266 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 YF+P++ + +I+IIY+S ++VQ D K+LIAYSSIAHMG V +G+FS G+EGA+ Sbjct: 267 YFSPLVQTICIISIIYSSFSTIVQQDTKRLIAYSSIAHMGVVVLGLFSNTIQGIEGAILL 326 Query: 333 MLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 ++HG VS ALF CV G+IYDR HTR I GLV MP + ++ VFT+AN G+P T Sbjct: 327 SIAHGFVSPALFICVGGIIYDRTHTRIINYIKGLVTYMPVFTILFFVFTLANTGIPLTLN 386 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 F+GE L ++ +F+ + A+L + +VLSA YSL+LY ++ +G S + LKD++ RE Sbjct: 387 FLGEQLSLLGIFEKNPITAILGATSIVLSACYSLFLYNRLSYG-SYSLHLAILKDINRRE 445 Query: 452 RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 ++ + + T+ GI+P I DT + +SS++ Sbjct: 446 FFLLLALLIPTILLGIFPNVILDTLHISVSSLL 478 >gi|24372596|ref|NP_716638.1| NADH dehydrogenase subunit M [Shewanella oneidensis MR-1] gi|24346619|gb|AAN54083.1|AE015545_5 NADH dehydrogenase I, M subunit [Shewanella oneidensis MR-1] Length = 514 Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 190/434 (43%), Positives = 279/434 (64%), Gaps = 15/434 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S HL VDG+S+L+V+LT F+ IL SWK I + + + L + V+G Sbjct: 79 WIPRFGISLHLAVDGLSLLMVILTCFIGVLAILCSWKEIVQRIGFFHLNLLWILGGVLGV 138 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 F++LD+ LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 139 FMALDLFLFFFFWEMMLVPMYFLIALWGHSVTDGKSRINAATKFFIYTQVSGLIMLVAII 198 Query: 184 --VMCWEKKTS----SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 V+ + T + +DL + S+++ + + FF +FA+K+P+ P H WLP+AH Sbjct: 199 GLVLTHQHATGVYTFNYLDLLN-TPMSNSVEWLLMLGFFIAFAVKMPLVPLHGWLPDAHS 257 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP L LI IIY ++V+ QT Sbjct: 258 QAPTAGSVDLAGILLKTAAYGLLRFALPLFPEASAEFAPYAMVLGLIGIIYGAIVAFGQT 317 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIK+L+AY+SI+HMG+V I I+SG + ++GA+ QM++HGL ++ LF G +Y+RLHTR Sbjct: 318 DIKRLVAYTSISHMGFVMIAIYSGSEVALQGAVVQMIAHGLSAAGLFILCGQLYERLHTR 377 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 D+ GGL + VM+ F++A++G+PGT F+GEFL+++ FQ + + +A+FG+ Sbjct: 378 DLRQMGGLWGRLRYLPGVMLFFSVASLGMPGTGNFVGEFLILVGSFQVAPVITAVATFGL 437 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 VL+++YSL + ++ FG +K + V LK L RE M+ IA L V G+YP P+ DT S Sbjct: 438 VLASVYSLIMLQRACFGPAKDDSV--LKGLDRRELTMMMVIAGLLVLLGLYPQPVIDTAS 495 Query: 478 VPLSSIIENYTLKT 491 L +++ Y L T Sbjct: 496 SSLINVLHWYLLPT 509 >gi|29126643|ref|NP_803505.1| NADH dehydrogenase subunit 4 [Harpochytrium sp. JEL105] gi|29029499|gb|AAO64950.1| NADH dehydrogenase subunit 4 [Harpochytrium sp. JEL105] Length = 457 Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 187/460 (40%), Positives = 289/460 (62%), Gaps = 28/460 (6%) Query: 16 GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFC 75 G F ILF Y R+ G+ + T+ I S ++ +++ + FQ F Sbjct: 14 GFFGILFPRY-----RTILGMWFMLLTL--IHSFYLVLIYNPNSAQFQ----------FQ 56 Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 LG+DG+S++L+VLTTFL P C++ + ++ L +E++++ FL LD++ Sbjct: 57 YMALGLDGLSLVLIVLTTFLMPICLIVE--------PDLVLPLLAIEALLMAVFLVLDVM 108 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FY+ FE+ LIP+F ++G + G + R+ AA FLYT GS+ ML +I ++ E T+++ Sbjct: 109 IFYLCFESVLIPLFYLMGKYQGRARRLSAALSLFLYTLGGSLLMLISIGLLYLEASTTNL 168 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L + P Q +++ FF +FA+KIPM PFH WLP AHV++PT GS+ LAGI+LK+ Sbjct: 169 QALLTVPLHP-DYQLLLFLGFFVAFAVKIPMIPFHLWLPEAHVESPTGGSILLAGILLKL 227 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +RF +PLFP AS Y+ P + L+LI I+YA L ++ Q D+KK+IAYSS+AHM Sbjct: 228 GGYGFLRFSIPLFPYASDYYQPFVALLALIGIVYAGLTAIRQIDMKKIIAYSSVAHMNLA 287 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +GIF+ G+EG++ M++HGLVS ALF+CVG++YDR HTR + Y GL MP +A+ Sbjct: 288 MLGIFANNLLGIEGSIHMMVAHGLVSGALFYCVGLLYDRYHTRLVRYYRGLAIYMPLFAI 347 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + FT++N+ PG++ FI EFLV + + +A++AS G++L+A YS+WLY +V FG Sbjct: 348 FFLFFTLSNVAFPGSANFIAEFLVFTGLMDINPFLALIASSGLLLTATYSMWLYNRVCFG 407 Query: 435 VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 S + + DL+ + ++ +A T+ FGI P I D Sbjct: 408 -STTSYISKFNDLTRADTFCLFALAFTTLLFGIKPNLILD 446 >gi|162455892|ref|YP_001618259.1| NADH dehydrogenase I chain M [Sorangium cellulosum 'So ce 56'] gi|161166474|emb|CAN97779.1| NADH dehydrogenase I chain M [Sorangium cellulosum 'So ce 56'] Length = 754 Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 187/505 (37%), Positives = 293/505 (58%), Gaps = 41/505 (8%) Query: 6 LSIVTFLPFLGVFVILFSSYLG-CGRRSFFGVALGISTINFIFSLFVWSVFDKG------ 58 LSI+TFLP LGV + + L R + + + +N + + ++++ FD+G Sbjct: 195 LSILTFLPLLGVVAVFLAHLLRYRDDRKLRLMTVVLMGVNLVLAAWLYAQFDRGFTRADG 254 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 +Q IE+ WI Y +GVDG+SI +V+LT ++ L+S+ S+ + + Y Sbjct: 255 NDGYQFIEHGVWIRSLNVEYFVGVDGVSISMVLLTALISFVGALASY-SVHDQLKGYFAM 313 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 + +L + + G F++LD+ LF++F+E L+PM+ +IG+WGG R YAA KFFLYT GS+F Sbjct: 314 YNLLVTGMFGVFIALDLFLFFVFWEVMLLPMYFLIGIWGGPRREYAAIKFFLYTLAGSVF 373 Query: 178 MLFAIV---------VMCWEKKTSSIIDLYAMSKFPFSIQ------------YWMWIAFF 216 ML A + + + T I + +S+ ++ Q W+W+ F Sbjct: 374 MLLAFIWFYLNAGHTYLVDGQATERIFSIPELSRVAWAAQGLTILGVAAVKVVWIWL--F 431 Query: 217 CSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAP 276 FAIKIPMFPFHTWLP+AHV+APTA SV LAG++LKMG YG +R L P A+Q+ AP Sbjct: 432 VGFAIKIPMFPFHTWLPDAHVEAPTAISVILAGVLLKMGTYGILRINFTLLPEATQWAAP 491 Query: 277 VIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSH 336 + ++ I+Y + +M Q+D+KKL+AYSS++HMG+ + + + G++ + QM +H Sbjct: 492 AMAVFGVVNILYGAFCAMAQSDLKKLVAYSSVSHMGFTLLALGAMTPQGIQACLVQMFNH 551 Query: 337 GLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEF 396 GL++ LF VGV+YDR+HTRDI +GGL MP Y ++ MA++GLPG SGF GE Sbjct: 552 GLITGMLFTLVGVVYDRVHTRDIDRFGGLASEMPLYTALVGFAFMASLGLPGLSGFWGEA 611 Query: 397 LVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ---------QLKDL 447 + + F + +LA+ GV+L+A Y LW +++ G + Q + ++ Sbjct: 612 MTFIGAFPRYRALTILAAVGVILTAAYHLWALQRMFLGTFRASWRQSKYLEPFGGKFPEI 671 Query: 448 SLRERCMVYPIAVLTVFFGIYPVPI 472 S RE + P+A L + G +P P+ Sbjct: 672 SGRELASIAPLAALVLVLGFWPRPL 696 >gi|222839803|ref|YP_002587022.1| NADH dehydrogenase subunit 4 [Glomus intraradices] gi|306960117|ref|YP_003875533.1| NADH dehydrogenase subunit 4 [Glomus irregulare] gi|222136765|gb|ACM44997.1| NADH dehydrogenase subunit 4 [Glomus intraradices] gi|306490547|gb|ADM94788.1| NADH dehydrogenase subunit 4 [Glomus irregulare] Length = 499 Score = 339 bits (870), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 199/488 (40%), Positives = 302/488 (61%), Gaps = 17/488 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGC-GRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 L+++ +P +GV I+ LGC R VAL +S NF SL +W +D S FQ Sbjct: 2 LTVLLLIPLIGVIGII----LGCSNERQSRQVALLVSLANFALSLVLWGEYDGNCSHFQF 57 Query: 65 IEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN-------FREYMIA 117 ++ + + FC + +G+DGIS+ V+LTTF+ P CIL + ++ N + ++I+ Sbjct: 58 VQDWSSVT-FCHFIIGLDGISLFFVLLTTFIIPTCILGT-PNLTSNQSGNISAVKSFLIS 115 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGSI 176 LV+E+++I F+ LD+LLFYI FE+ LIP+F++IG+W S+ ++ A++ FLYT FGS+ Sbjct: 116 LLVIETLLIALFVVLDLLLFYICFESVLIPLFLMIGIWSHSQHKVRASFMLFLYTLFGSL 175 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 FML + + + + S+ L A S IQ +W+ F + AIK P+ PFH WLP AH Sbjct: 176 FMLLSFIAL-YMSIGSTDYQLIATSCIQPEIQKILWLGIFLALAIKTPLVPFHIWLPLAH 234 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +AP AGS+ LAG++LKM YG +R LLPLFP AS Y+ P+++ L I+IIY SL ++ Q Sbjct: 235 TEAPLAGSMLLAGVILKMATYGYLRILLPLFPEASSYYTPLVYTLCTISIIYTSLSTLRQ 294 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K +IAY+SI+HM T+G+FS G+EG++ ++HGL S ALF VGV+YDR HT Sbjct: 295 INLKSIIAYASISHMAIATMGVFSNNVQGIEGSILLSVAHGLASPALFISVGVLYDRWHT 354 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 + Y GL MP ++++ +F +ANM +P T+ F+GEFL +Q + + +LAS Sbjct: 355 LILPYYRGLTSTMPLFSLLFFIFCLANMAVPLTANFLGEFLSFAGAYQRNPFITILASSS 414 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 VVL+A Y++W Y +V G S + D+S RE ++ P +L GI P I D+ Sbjct: 415 VVLTAAYTIWTYNRVCLG-SPSRYLYPCLDISRREFFLLLPFLLLIFVLGIVPFVILDSL 473 Query: 477 SVPLSSII 484 +SS+I Sbjct: 474 HFSVSSLI 481 >gi|288917195|ref|ZP_06411564.1| proton-translocating NADH-quinone oxidoreductase, chain M [Frankia sp. EUN1f] gi|288351386|gb|EFC85594.1| proton-translocating NADH-quinone oxidoreductase, chain M [Frankia sp. EUN1f] Length = 521 Score = 338 bits (868), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 177/448 (39%), Positives = 282/448 (62%), Gaps = 17/448 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 +D ++ FQ + + WI F SY +G DGIS++L++L L P +L+SW +N Sbjct: 54 YDPDKAGFQFGQKHEWIKQFGVSYSVGADGISLVLMLLAALLVPVVVLASWDE-ADNVNR 112 Query: 114 YMIAF----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG----GSERIYAAY 165 + AF L LE+ +IG F + D+ LFY+FFEA LIPM+ +IG +G ++R YAA Sbjct: 113 SVPAFFALLLALETGMIGVFAATDVFLFYVFFEAMLIPMYFLIGSYGPVEEKAQRSYAAV 172 Query: 166 KFFLYTFFGSIFMLFAI----VVMCWEKKTSSIIDLYAMSK---FPFSIQYWMWIAFFCS 218 KF LY+ FG + ML A+ V+ + T D + + Q +++ FF + Sbjct: 173 KFLLYSLFGGLLMLAAVIGLYVLSSQQFDTGGTFDFATLRQHLVITPDTQKLLFLGFFIA 232 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 FAIK P+FPFHTWLP+A Q+PT G+V L G++ K+G +G IR+ +PLFP AS+YFAP++ Sbjct: 233 FAIKAPLFPFHTWLPDAGAQSPTGGAVLLVGVLDKVGTFGLIRYCIPLFPDASEYFAPMV 292 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 L++I I Y +L+++ Q D+K+L+AY+S+AH G++ +G F+ GA+ M++HGL Sbjct: 293 LALAVIGIFYGALLAIGQRDMKRLVAYTSLAHFGFIALGTFAFTSQAGTGAVLYMVNHGL 352 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 + LF VG + R +RD+ AYGG+ P A V ++ ++++ LPGT+ F+ EFLV Sbjct: 353 STGLLFVVVGFLVSRQGSRDVGAYGGMAQVTPMLAGVFLIAGLSSLALPGTNSFVSEFLV 412 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 ++ F +A++A+ G+VL+A+Y L+LY++ + G K EK++ +KDLS+RER +V P+ Sbjct: 413 LVGTFTEYRALAIVATCGIVLAAIYILFLYQRTMTGPVKDEKLRLVKDLSVRERVVVAPM 472 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 L + G+YP P+ D + ++S E+ Sbjct: 473 VALIIGLGVYPKPLLDIITPAVTSTFED 500 >gi|193212949|ref|YP_001998902.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chlorobaculum parvum NCIB 8327] gi|193086426|gb|ACF11702.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chlorobaculum parvum NCIB 8327] Length = 545 Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 200/536 (37%), Positives = 301/536 (56%), Gaps = 59/536 (11%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG------- 58 LS++ FLP + +IL + ++ V+L + + + +W +D Sbjct: 2 LSLIVFLPIIAGLIIL--AVPASQKQIIRIVSLLAALAQGVLAFLIWRQYDPTMAGIIAA 59 Query: 59 -----RSSFQMIEYYHWIDYFC--------SYHLGVDGISILLVVLTTFLTPFCILSSWK 105 SFQMIE WI Y LGVDG+SI +V+LT ++ +LSSW Sbjct: 60 PGGSPEGSFQMIERLPWISLNLGSFGPLNIEYFLGVDGLSITMVILTALISIIGVLSSW- 118 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 +IQ+ + Y I + +L + ++G F++LD LFY+F+E L+PM+ +IG+WGG R YAA Sbjct: 119 TIQKQVKGYFILYNLLSTAMMGCFVALDFFLFYVFWELMLLPMYFLIGIWGGPRREYAAI 178 Query: 166 KFFLYTFFGSIFML-------FAIVVMCWEKKTSSIIDLYAMSKF-PFSI-----QYWMW 212 KFFLYT FGS+FML F+++ T S++ + + + P +I W + Sbjct: 179 KFFLYTLFGSVFMLLVMIGLYFSVIDPVTGHNTFSLVAMASQENYIPGAILGPESTTWRY 238 Query: 213 IAF---FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 IAF F FAIK+PMFPFHTWLP+AHV+APT SV LAG++LK+G YG +R PLFP Sbjct: 239 IAFIVLFIGFAIKVPMFPFHTWLPDAHVEAPTPISVILAGVLLKLGTYGMMRINFPLFPE 298 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 VI I IIY + ++ Q D+KK++AYSSI+HMGYV +G+ + G+ GA Sbjct: 299 VFHAGLYVIGVFGAINIIYGAFCALAQQDLKKMVAYSSISHMGYVLLGLAAANTEGMIGA 358 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 ++QM +HG +++ LF VGVIYDR H+R I +GGL MP YA + V A++GLPG Sbjct: 359 LYQMFNHGTITAMLFLLVGVIYDRAHSRQIDKFGGLATYMPVYAGFVTVAWFASLGLPGL 418 Query: 390 SGFIGEFLVIMSVFQN--SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK-- 445 SGFI E LV + F + +A+++ G+V A Y LW +++ G K + + +L+ Sbjct: 419 SGFISEALVFVGAFTEPITRPIAMVSVLGIVFGAAYLLWSLQRMFLGKRKPDALYELETD 478 Query: 446 ----------------DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 DL RE M+ P+ ++ + GIYP+P+ + ++ ++E Sbjct: 479 AEGHEHIHFHDWKGKLDLDARELTMLVPLTIIVIALGIYPMPVMGLLTSSINKLVE 534 >gi|158251752|ref|YP_001504366.1| NADH dehydrogenase subunit 4 [Pleurotus ostreatus] gi|122893353|gb|ABM67625.1| NADH dehydrogenase subunit 4 [Pleurotus ostreatus] Length = 486 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 183/463 (39%), Positives = 290/463 (62%), Gaps = 20/463 (4%) Query: 24 SYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDG 83 S +G + +AL S +N SLF+W FD ++ +Q + ++ ++ FC + G+DG Sbjct: 39 SVIGGNQIKMKKIALITSLLNLFVSLFIWFQFDSNQTQYQFVSEFNQLN-FCHLNFGIDG 97 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 IS+ V+LTTF+TP +LS++ +I N + ++I+FL+LES+ I AF+SLD+LLFYIFFE+ Sbjct: 98 ISLYFVLLTTFVTPVALLSNYTNITNNLKTFLISFLLLESLQICAFVSLDLLLFYIFFES 157 Query: 144 SLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK 202 L +F+II ++G G++R +A FLYT GS+ + +I LY +S Sbjct: 158 VLPILFIIIVLFGHGNDRFRSALLLFLYTLAGSLPIF-------------QLISLYEIS- 203 Query: 203 FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRF 262 Q +W+ FF +FA+K P++PF WLP AH +P AGS+ LA +LK+ YG +R Sbjct: 204 --LESQKILWLGFFIAFAVKTPLYPFIIWLPKAHADSPLAGSIILAATILKLATYGYLRV 261 Query: 263 LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGM 322 L+ P A+ YF P++ +++IAIIYAS +++Q D K+LIAYSSI+HMG V +G+FS Sbjct: 262 LINFLPDATNYFNPLVQTIAVIAIIYASFSTIIQQDTKRLIAYSSISHMGVVVLGLFSNT 321 Query: 323 KSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTM 381 G+EGA+ L+HG VS ALF CV G+IYDR R I GL MP + ++ +FT+ Sbjct: 322 IQGIEGAILLALAHGFVSPALFICVGGIIYDRTGKRIINYIRGLATYMPVFTIIFFIFTL 381 Query: 382 ANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV 441 N G+P + F+GE L ++ ++Q + +A L + G+VLSA YS++LY ++ +G + Sbjct: 382 CNTGIPLSLNFLGEQLSLIGIWQQNPIIASLGATGIVLSACYSIFLYNRLSYG-DYSPHM 440 Query: 442 QQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 Q +KD++ RE ++ + + T+ FGI P + + +S+++ Sbjct: 441 QPVKDITRREYYLLISLLIPTIAFGILPNVLLTSLHTSVSALL 483 >gi|15088737|ref|NP_150107.1| NADH dehydrogenase subunit 4 [Hyaloraphidium curvatum] gi|15077944|gb|AAK83429.1|AF402142_13 NADH dehydrogenase subunit 4 [Hyaloraphidium curvatum] Length = 457 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 180/441 (40%), Positives = 276/441 (62%), Gaps = 25/441 (5%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLT 96 AL + I S ++ +F+ FQ F LG+DGIS+ LV+LT F+ Sbjct: 28 ALWAMALTLIHSFYILIIFNPYTGQFQ----------FSFMGLGLDGISLTLVILTAFIM 77 Query: 97 PFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG 156 P C+L E + L++E++++ FL LD+++FY+ FE+ L+P+F ++G +G Sbjct: 78 PICLLVE--------PEQAVPLLIIEALLMAVFLVLDVMVFYLCFESVLVPLFYMMGNYG 129 Query: 157 GSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWI 213 G +R + AA FLYT GS+ ML +I ++ E T+ L A+ P S Q ++ Sbjct: 130 GRDRRLSAALALFLYTLGGSLVMLTSIGILYLEASTT---HLQALLTVPLSEKNQNMLFW 186 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 F +FA+K+PM PFH WLP AHV+APT GS+ LAGI+LK+G YG +RF+LPLFPLAS Sbjct: 187 GFLLAFAVKVPMIPFHLWLPEAHVEAPTGGSILLAGIILKLGTYGFLRFVLPLFPLASMS 246 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 + P++ +SL+ ++YA L ++ QTD+KK+IAYSS+AHM +GIFS +EGA+ M Sbjct: 247 YQPIVAAVSLVGVVYAGLTALRQTDVKKIIAYSSVAHMNLAMLGIFSNNLLALEGAILMM 306 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGLVS ALF+C+G +YDR HTR + Y GL MP +A+ + FT+AN+ PGT+ F+ Sbjct: 307 IAHGLVSGALFYCIGALYDRHHTRLVRYYRGLASTMPAFAIFFLFFTLANVAFPGTANFM 366 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEFL+ + + V +LAS G++L+A YS+WLY +++FG + + DL+ + Sbjct: 367 GEFLIFTGLVNQNIMVTILASSGMLLTASYSMWLYNRMMFG-APASSIDYYNDLTRMDWT 425 Query: 454 MVYPIAVLTVFFGIYPVPIRD 474 ++ +A+ T++ G YP I + Sbjct: 426 VMVLLAIPTLWIGFYPNAILE 446 >gi|303247490|ref|ZP_07333762.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio fructosovorans JJ] gi|302491186|gb|EFL51078.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio fructosovorans JJ] Length = 525 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 186/410 (45%), Positives = 261/410 (63%), Gaps = 3/410 (0%) Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 +FQ +E W+ +YH+GVDG+S+ +++LT + P C+L SW I + E+ L Sbjct: 61 AFQFVEQAPWLPALGMTYHMGVDGLSLYMILLTALMLPLCVLGSWTYISKRVTEFHFCLL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++ S IG F +LD +LFY+F+EA L+PM+++I VWGG R YA+ KFFLYT GS +L Sbjct: 121 LMTSACIGVFAALDFVLFYVFWEAMLVPMYLLIAVWGGPRRRYASIKFFLYTLAGSTLLL 180 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AIV T SI +L S + F Q W ++A +FAIK+PMFPFHTWLP AHV+A Sbjct: 181 AAIVAFRHVGGTFSIPELMEKS-YSFRFQMWAFLAMALAFAIKVPMFPFHTWLPAAHVEA 239 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGSV LA I+LKMG YG +RF LPL P AS AP + +S+ +IIY +++ QTDI Sbjct: 240 PAAGSVLLAAILLKMGTYGFLRFCLPLTPAASVTAAPAMIAISIASIIYGGCIALGQTDI 299 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKLIAYSS+ HMG+VT+GIF GV GA+ QML+HG+ + LF VG+IY+R H+R+I Sbjct: 300 KKLIAYSSVGHMGFVTLGIFLFSVKGVSGAILQMLNHGITTGGLFMMVGLIYERSHSREI 359 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL MP + + VF+ +++ PGT+ F+GE LV++ F N+ V A G +L Sbjct: 360 ADNQGLGKFMPAFMFLFGVFSFSSLAFPGTNSFVGEILVLIGAFSNNPWVGFAAVPGAML 419 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +A Y L L ++V +G K + DL RE + P+A+L + G+ P Sbjct: 420 AAAYMLRLLQRVTWGEPSAFK-KSWHDLGAREWVTLIPLALLVFYIGLAP 468 >gi|30315638|ref|NP_847989.1| NADH dehydrogenase subunit 4 [Harpochytrium sp. JEL94] gi|30230291|gb|AAO62901.1| NADH dehydrogenase subunit 4 [Harpochytrium sp. JEL94] Length = 457 Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 176/433 (40%), Positives = 276/433 (63%), Gaps = 21/433 (4%) Query: 43 INFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILS 102 + + S ++ +++ + FQ F LG+DG+S++L+VLTTFL P C++ Sbjct: 34 LTLVHSFYLVLIYNPNSAQFQ----------FQYMALGIDGLSLVLIVLTTFLMPICLIV 83 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERI 161 E ++ L +E++++ FL LD+++FY+ FE+ LIP+F ++G + G + R+ Sbjct: 84 E--------PELVLPLLAIEALLMAVFLVLDVMIFYLCFESVLIPLFYLMGKYQGRARRL 135 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAI 221 AA FLYT GS+ ML +I ++ E T+++ L + P Q +++ FF +FA+ Sbjct: 136 SAALSLFLYTLGGSLLMLISIGLLYLEASTTNLQALLTVPIHP-DYQLLLFLGFFIAFAV 194 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 KIPM PFH WLP AHV++PT GS+ LAGI+LK+GGYG +RF +PLFP AS Y+ P + L Sbjct: 195 KIPMIPFHLWLPEAHVESPTGGSILLAGILLKLGGYGFLRFSIPLFPYASDYYQPFVALL 254 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +LI I+YA L ++ Q D+KK+IAYSS+AHM +GIF+ G+EG++ M++HGLVS Sbjct: 255 ALIGIVYAGLTAIRQIDMKKIIAYSSVAHMNLAMLGIFANNLLGIEGSIHMMVAHGLVSG 314 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF+CVG++YDR HTR + Y GL MP +A+ + FT++N+ PG++ FI EFLV Sbjct: 315 ALFYCVGLLYDRYHTRLVRYYRGLAIYMPLFAIFFLFFTLSNVAFPGSANFIAEFLVFTG 374 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 + + +A++AS G++L+A YS+WLY +V FG + + + DL+ + + +A Sbjct: 375 LMDINPFLALIASTGLLLTATYSMWLYNRVCFGATT-SYISKFNDLTKADTFCLSALAFT 433 Query: 462 TVFFGIYPVPIRD 474 T+ FG+ P I D Sbjct: 434 TLLFGLKPNLILD 446 >gi|115531581|ref|YP_783943.1| NADH dehydrogenase subunit 4 [Aurelia aurita] gi|110226008|gb|ABG56240.1| NADH dehydrogenase subunit 4 [Aurelia aurita] Length = 480 Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 189/407 (46%), Positives = 259/407 (63%), Gaps = 7/407 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 S + GVD +S+ ++LT LTP CI+ SW SI +E+++ L + ++IG F SL++L Sbjct: 75 SLYFGVDHLSLPFILLTAILTPICIIISWNSITYLVKEFLVFLLAIHLLLIGVFTSLNIL 134 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 LFYI FE LIPMF++IG+WG E+ AA+ FF +T GS+FML I + K + Sbjct: 135 LFYIMFEGILIPMFLMIGIWGSRKEKERAAFYFFFFTLAGSLFMLLGIFTI---YKHTGT 191 Query: 195 ID--LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +D + ++ P +Q+W++I FF S A+KIP PFH WLP AHV+AP AGSV LAG++L Sbjct: 192 LDYTILSLQTLPSELQFWVFIGFFLSLAVKIPKIPFHIWLPQAHVEAPVAGSVLLAGVLL 251 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +RF LFP+ASQYF+PVI L IA+IYASL + QTD KKL+AYSS+AHMG Sbjct: 252 KLGGYGFLRFSWTLFPVASQYFSPVIILLGSIAVIYASLSTCRQTDAKKLVAYSSVAHMG 311 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 VTI IFS G+ A+ ML+HG VSS LF V +YDR HTR I Y G+V+ MP Y Sbjct: 312 LVTIAIFSRTSEGLVAAIILMLAHGFVSSGLFITVTNLYDRFHTRIIRYYKGVVYTMPIY 371 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + + + +AN+ P + F+GEF+ I+S Q S + G+VLSA YSL Y KV Sbjct: 372 STLFFLLILANIAFPISMNFVGEFMSILSALQFSLLAILCPLAGMVLSAAYSLLFYNKVS 431 Query: 433 FGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 FG +Q +D++ RE + VLT+ G+ P + T +P Sbjct: 432 FGYPS-SFLQFARDVNRRELWPPLLLIVLTITLGVMPTCLDLTLCLP 477 >gi|166895617|ref|YP_001661411.1| NADH dehydrogenase subunit 4 [Cycas taitungensis] gi|166706949|dbj|BAF98413.1| NADH dehydrogenase subunit 4 [Cycas taitungensis] Length = 495 Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 193/477 (40%), Positives = 265/477 (55%), Gaps = 7/477 (1%) Query: 13 PFLGVFVILFSSYLGCGR-RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI 71 P LG + LF L R R + L S + F + FD + Q +E W+ Sbjct: 19 PVLGSIIPLF---LPNSRMRLIRSIGLCASLLTFSYPPVPRIQFDSSTAKSQFVETIRWL 75 Query: 72 DYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 Y + ++G+DGI V+LTTF P IL W S++ +EY+IAF + E +I F Sbjct: 76 PYGSINLYMGIDGIPSSSVILTTFSIPIRILVGWSSMKSYGKEYIIAFPIREFPMIAVFR 135 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 D LLF++ E+ LIPMF+IIGVWG +R I AA++F YT GS+ ML AI + + Sbjct: 136 MPDPLLFHVLPESVLIPMFIIIGVWGSRQRKIKAAHQFLPYTSLGSVLMLLAIPFIFSQT 195 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 T+ + ++F Q + WIA F +K+PM P H W P AHV+APTAGSV AG Sbjct: 196 GTTDS-QILLTTEFSERRQIFPWIASSAPFPVKVPMVPVHIWSPEAHVEAPTAGSVISAG 254 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I K+G YG +RF +P+FP A+ P I+ LS IA IY S + Q D KK+IAYS +A Sbjct: 255 IPSKLGTYGFLRFSIPMFPEATLCLTPSIYTLSAIATIYTSPTTPRQIDPKKIIAYSPVA 314 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 H +VTIG+ S G+ G++ M SHG V SA F CVGV YDR TR YGG V M Sbjct: 315 HTNFVTIGMSSPNIQGIGGSIPPMSSHGPVPSAPFPCVGVPYDRHKTRPAKYYGGSVSTM 374 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + + T+ANMGLPGTS IGEF +++ FQ + VA A+ G++ A Y W Y Sbjct: 375 PNPSTIFFFSTLANMGLPGTSSSIGEFPILVGAFQRNGLVATSAALGMISGAAYPPWPYN 434 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + V G SK + D + RE + P+ V V G++P D P+S+ +++ Sbjct: 435 RAVLGNSKPNFPHKSSDPNGREVPISPPLTVGVVRMGVHPKVFPDRMHTPVSNSVQH 491 >gi|38639905|ref|NP_943716.1| NADH dehydrogenase subunit 4 [Penicillium marneffei] gi|33860259|gb|AAQ54917.1| NADH dehydrogenase subunit 4 [Penicillium marneffei] Length = 487 Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 195/479 (40%), Positives = 301/479 (62%), Gaps = 7/479 (1%) Query: 13 PFLGV-FVILFSSY-LGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 P +G+ F++L S+Y L + L S IN I SLF++ +FD FQ IE + Sbjct: 9 PLIGISFIVLESNYGLHLANLKIKSIGLITSIINLIISLFMFIIFDFSGKHFQFIEEQYK 68 Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENFREYMIAFLVLESMVIGAF 129 I+YF Y LGVDG+SI V+LTT + P +LS+W SIQ +N +++ L+LE++++G F Sbjct: 69 INYFDIY-LGVDGLSIYFVLLTTIIMPIALLSNWNSIQSKNILSFVVIILLLETLLLGVF 127 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 L LD+LLFYIFFE+ L P+F++IG++G S ++ A++ FLYT GS+FML +I+ M Sbjct: 128 LVLDILLFYIFFESILPPLFLLIGLFGSSNKVRASFYLFLYTLLGSLFMLLSIITMASIM 187 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 T+ L+ + F ++ Q +++ F +FA+K P +TWL AHV++P +GS+ LAG Sbjct: 188 GTTDFDALFK-TNFEYTTQLFLFYGIFIAFAVKTPTIFLNTWLLKAHVESPLSGSIILAG 246 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+ YG R +LPL P AS + +++ + ++ IIYAS ++ D+K+LIAYSS++ Sbjct: 247 IVLKLSLYGIFRLILPLLPKASLNYTFIVYVIGVVTIIYASFSTLRTIDVKELIAYSSVS 306 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHN 368 H +G FS G+EGA+ L+HG VSS LF C G++YDR TR I Y G+ Sbjct: 307 HAAVYLLGAFSNTIQGIEGAIALGLAHGFVSSGLFICAGGILYDRSSTRLITYYRGMGQI 366 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 MP ++++ + ++ N G+P T F+GEF+ I VF+ + +LAS +V SA Y++++Y Sbjct: 367 MPIFSILFFILSLGNCGVPLTLNFLGEFMSIYGVFERMPILGILASSSIVFSAAYTIFMY 426 Query: 429 RKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 ++ FG S ++ L+D++ RE M+ +LTV FGIYP PI D +SS+I N Sbjct: 427 NRIAFGGSYSIFFKENLRDVNKREFIMLLIFVILTVLFGIYPSPILDGLHYSVSSLIYN 485 >gi|290967670|ref|YP_003495094.1| NADH dehydrogenase subunit 4 [Trametes cingulata] gi|289832514|gb|ADD21050.1| NADH dehydrogenase subunit 4 [Trametes cingulata] Length = 484 Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 180/453 (39%), Positives = 290/453 (64%), Gaps = 5/453 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL S +N S+ +W FD +Q + ++ + FC +++G+DGIS+ V+LTTF+ Sbjct: 33 IALSTSLVNLFISILLWIQFDSSIIDYQFLLEFNQLS-FCQFNIGIDGISLYYVLLTTFI 91 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 TP +LS++K+I +N + ++I+FL+LE++ I F+ LD+ LFYIFFE+ L +F++I V+ Sbjct: 92 TPIALLSNYKNIYKNLKYFLISFLILETLQIALFVVLDLFLFYIFFESVLPILFIVIIVY 151 Query: 156 G-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 G G RI +A FFLYT GS+FML AI + + S+ ++++ Q +W++ Sbjct: 152 GSGVNRIRSALLFFLYTLAGSLFMLLAI-LQIYSYVGSTDFQFISLNEIALDSQKILWLS 210 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF +FA+K P++P WL AH +P AGS+ LAG +LK YG IR L+ L P AS YF Sbjct: 211 FFLAFAVKTPLWPLTGWLYRAHADSPLAGSILLAGTILKFATYGYIRVLIHLLPDASHYF 270 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P++ +++I +IY+SL +++Q D K LIAYSSIAHM V +G+FS G+EGA+ L Sbjct: 271 GPLVQTIAVITLIYSSLATIIQQDTKSLIAYSSIAHMSVVILGLFSNNIQGIEGAILLSL 330 Query: 335 SHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +HG VS ALF CV GVIY+R TR I GLV MP + ++ VFT+AN G+P + F+ Sbjct: 331 AHGFVSPALFICVGGVIYERTGTRIIHYMRGLVTYMPVFTILFFVFTLANTGVPLSLNFL 390 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GE L ++ ++ S ++ L + G+V SA YS++LY ++ +G+ ++ +KD++ E Sbjct: 391 GEQLSLIGIWDKSPIISALGATGIVFSACYSIYLYNRLSYGL-YSPHLKPVKDITRLEFN 449 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 ++ + + T GI+P + D+ + +++++ N Sbjct: 450 LLIALLIPTFLLGIFPNVVLDSLHLAVTTLLYN 482 >gi|301165400|emb|CBW24971.1| putative NADH-ubiquinone oxidoreductase subunit M [Bacteriovorax marinus SJ] Length = 515 Score = 336 bits (862), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 196/476 (41%), Positives = 289/476 (60%), Gaps = 34/476 (7%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYH----WIDYFCS-YHLGVDGISILLVVL 91 AL + I + ++ +W FD + Q E + WI F YHLGVDGIS+ +++L Sbjct: 39 ALLNTAITVLLTVKLWMGFDNAVAGMQ--EAFTVKIPWIKQFNIFYHLGVDGISMPMILL 96 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 T+ + CILSSW ++++ + Y L L+S V G F +LD LFY+++E LIPMF + Sbjct: 97 TSVILFICILSSW-TVKKQIKGYFALILFLQSTVFGVFFALDFFLFYVYWEVMLIPMFFL 155 Query: 152 IGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK-KTSSIIDLYAM---------- 200 IG+WGG R YAA KFFLYTFFGSI ML +V + K DL A+ Sbjct: 156 IGIWGGENREYAAVKFFLYTFFGSILMLVGMVALYHATGKGVDSFDLLALKASADEFIKM 215 Query: 201 ------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 ++ F ++M++ F FAIK+P+FPFHTWLP+AHVQAPTA SV LAG++LKM Sbjct: 216 KVSLFGTEVAFDKLFFMFM--FIGFAIKVPVFPFHTWLPHAHVQAPTAISVILAGVLLKM 273 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG +R P+FP A+ YFA I L LI IIY + +M QTD+KKLIAYSS++HMG+V Sbjct: 274 GTYGFLRIAFPIFPGAAVYFADFIAILGLINIIYGAFCAMAQTDVKKLIAYSSVSHMGFV 333 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF------AYGGLVHN 368 IG+ + G+ GA+ QM +HG ++ +F +G++Y+R H R I +GGL Sbjct: 334 MIGMAAMTSQGLNGAVLQMFNHGTSAAMMFLLIGILYERSHHRWIIRPDGTKGFGGLYTQ 393 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P +++V ++ A MGLPG SGFI E L+ +++ T+ VLA G+++ A Y LW++ Sbjct: 394 LPVFSIVFIIGMFAAMGLPGLSGFISEALIFFGIYKKFTTMTVLALLGLLIGAAYLLWMF 453 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 +++ FG E+ + D++ RE + P+ V + FGI+P PI + ++S++ Sbjct: 454 KRMFFG-DVVEECKSYTDMNAREIFYMLPLCVAVILFGIWPSPILNIMKASVNSLV 508 >gi|299737846|ref|XP_002910010.1| NADH dehydrogenase subunit 4 [Coprinopsis cinerea okayama7#130] gi|298403002|gb|EFI26516.1| NADH dehydrogenase subunit 4 [Coprinopsis cinerea okayama7#130] Length = 499 Score = 336 bits (861), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 187/489 (38%), Positives = 301/489 (61%), Gaps = 17/489 (3%) Query: 12 LPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI-EYYHW 70 +P +G ++L +AL S INF SLF+W FD + +Q + E+ Sbjct: 8 IPIIGSLILLPMDNTLKSENEMKKIALITSLINFFISLFIWYNFDSNTTQYQFVSEFNSP 67 Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWK-----------SIQENFREYMIAFL 119 FC + G+DGIS+ V+LTTF++P ILS++ + + ++I+FL Sbjct: 68 YLQFCHLNFGIDGISLYFVLLTTFISPIAILSNYNLSFITNDGEKTTTGNKLKLFLISFL 127 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFM 178 +LES+ I AF+SLD+LLFYIFFE+ L +FVII ++G G +R +A+ FLYT GS+ M Sbjct: 128 ILESLQICAFVSLDLLLFYIFFESVLPILFVIIIIFGHGFDRFRSAFLLFLYTLAGSLPM 187 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L +I+ M + S+ L ++ ++ S+ Q +W+ FF +FA+K P++PF WLP AH Sbjct: 188 LLSIL-MIYSYIGSTDFQLISLPEYEISLSSQKLLWLGFFIAFAVKTPLYPFIIWLPKAH 246 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +P AGS+ LA +LK+ YG +R L+ + P A+ YF+P++ +++I++IYAS +++Q Sbjct: 247 SDSPLAGSILLAATILKLATYGYLRVLIQILPDATHYFSPLVQSIAIISLIYASFSTIIQ 306 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLH 355 D K+LIAYSS+ HM V +G+FS G+EGA+ ++HG VS ALF CV G+IY+R Sbjct: 307 QDTKRLIAYSSVCHMAVVVLGLFSNTIQGIEGAILLAIAHGFVSPALFICVGGIIYERTG 366 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR I GLV MP + ++ +FT+AN G+P + F+GE L ++ ++Q + +A L + Sbjct: 367 TRVIKYIRGLVTYMPVFTILFFIFTLANTGIPLSLNFLGEQLSLLGIWQVNPIIAALGAT 426 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++ SA+YS++LY ++ +G V+ +KD++ RE ++ + + TV GI P I D Sbjct: 427 GIIFSAIYSIFLYNRLSYGNYSPHMVKIVKDINRREYYLLIALLIPTVLLGIIPNVILDC 486 Query: 476 FSVPLSSII 484 + +SS++ Sbjct: 487 LHLSVSSLL 495 >gi|15147311|ref|NP_150315.1| NADH dehydrogenase subunit 4 [Spizellomyces punctatus] gi|15100080|gb|AAK84244.1|AF404303_18 NADH dehydrogenase subunit 4 [Spizellomyces punctatus] Length = 470 Score = 335 bits (860), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 193/453 (42%), Positives = 279/453 (61%), Gaps = 15/453 (3%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLT 96 AL S IN +L + FD ++FQ + + F G+DGIS+ L+ LT L Sbjct: 30 ALAFSIINLAHTLLIVHFFDGSTAAFQ----FQSLGIF-----GIDGISLWLIFLTNMLM 80 Query: 97 PFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG 156 P ILSSWK++ + ++I L++ F+ LD+LLFYI FE LIPMF +IG +G Sbjct: 81 PIVILSSWKAVNIMVKPFIILLLLIGFWSNAVFMVLDLLLFYISFEGVLIPMFFLIGFYG 140 Query: 157 GSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWI 213 G R I+AAY+FFLYT FGS+ + A++V+ E T+ D + P S QY +W+ Sbjct: 141 GRNRKIHAAYQFFLYTLFGSLLLFLALIVLYLETGTT---DYQVLLTIPISQNRQYILWL 197 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF S AIKIPM P H WLP AHV+APTA SV LA I+LK+G YG +R+++PLFP S Y Sbjct: 198 AFFISLAIKIPMIPVHIWLPEAHVEAPTAASVILAAILLKLGSYGFLRYVIPLFPDGSTY 257 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P++ + ++AIIY+S+ + Q D KK+IAYSSI HM TI +F+ G+ ++ + Sbjct: 258 FTPLVCTMCILAIIYSSVACLAQVDAKKIIAYSSIGHMNTATIALFTNDYHGLSAGVYFL 317 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +SHGL+SSALF +GV+YDR HTR I Y GLV MP + V+ ++F++AN+ +PGTSGFI Sbjct: 318 ISHGLISSALFLLIGVLYDRYHTRTIKYYRGLVMIMPVFTVLFLIFSLANVAVPGTSGFI 377 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFL + + +AV AS +VL+ Y+LW + +V +G +D++ +E Sbjct: 378 SEFLTFLGALNLNPFIAVSASIAIVLAPAYALWFFHRVSYGSFSTYLPSLYQDVTAKELH 437 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 ++ P+ T FGIYP I + + S++ + Sbjct: 438 LLLPLLFFTFLFGIYPQLIFEPLHMSCLSLLHD 470 >gi|317130735|ref|YP_004097017.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacillus cellulosilyticus DSM 2522] gi|315475683|gb|ADU32286.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacillus cellulosilyticus DSM 2522] Length = 504 Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 198/505 (39%), Positives = 308/505 (60%), Gaps = 23/505 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 MN L+ + FLP G +IL + + +A G S + + SL VW +FD+ Sbjct: 1 MNPFILTWLVFLPLAGALLIL--TVPKENKNLVRSIATGTSILALVVSLVVWGMFDRANP 58 Query: 61 SFQMIEYYHWIDY---FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 QM ++ W D +YHLGVDG+S L+VLTT +T I +S+ +IQ +E+ + Sbjct: 59 DMQMNHFFQWFDLGFLQINYHLGVDGLSAPLLVLTTIVTTLSIFASF-TIQNRVKEFYVW 117 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 LVL + ++G F++LDM LF++FFE +LIPMF II +WGG + YAA+KF LYT GS Sbjct: 118 TLVLLTGMLGVFVALDMFLFFLFFELTLIPMFFIIAIWGGKAKEYAAFKFLLYTGLGSAI 177 Query: 178 MLFAIVVMCWEKKTSS---------IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 M + M + +S + D++A + +++ +++A F +FA+K+P+FPF Sbjct: 178 MFITFIAMYYVALQASGYATFNMIVLADIFANVEVSSTVKAGLFLALFVAFAVKLPIFPF 237 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 HTWLPNAHV+APTA S+ LAG++LKMGGYG IR + +FP + FA +I L ++ IIY Sbjct: 238 HTWLPNAHVEAPTAASMILAGVLLKMGGYGLIRIGIGVFPDQAARFATLIALLGVVNIIY 297 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 +L+++VQTD+K+L+A+SSI+HMG V +GI S +SG++GA+FQ++SHG +++ LFF VG Sbjct: 298 GALLALVQTDLKRLVAFSSISHMGIVLLGIASFTESGMQGAIFQLVSHGFIAALLFFMVG 357 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 IY+R TR I GGL ++P A M+ MA++GLPG SGF+ E L + +F + Sbjct: 358 AIYERTKTRTISELGGLSKSIPILAGFMLAAAMASVGLPGLSGFVSELLAFIGIFGADAS 417 Query: 409 VAVLASF-------GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 + A++ G++L+A Y LW ++ FG +K ++LKD E + + Sbjct: 418 ILPAAAWFGVIGGIGIILTAAYLLWAMQRTTFG-QLDDKYKELKDARPLEYIPMIGLLAF 476 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIEN 486 ++ G+YP + D ++ + I+ Sbjct: 477 SLLIGVYPNILSDVINITVIDIVSK 501 >gi|193216253|ref|YP_001997452.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroherpeton thalassium ATCC 35110] gi|193089730|gb|ACF15005.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroherpeton thalassium ATCC 35110] Length = 545 Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 195/539 (36%), Positives = 305/539 (56%), Gaps = 59/539 (10%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG------- 58 LS++ FLP + ++L + G ++ V+L + + S+ +W +DK Sbjct: 2 LSLIVFLPIIAFVIVL--AIPGSQKQIIRFVSLAAAIAQGVLSVILWQGYDKTMPGIVAG 59 Query: 59 -----RSSFQMIEYYHWIDYF--------CSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 +FQ +E WI Y LGVDG+SI +V+LT ++ ++SSW Sbjct: 60 SNGNVSETFQFVERLDWITLNFGRFGTLNIEYFLGVDGLSITMVLLTALISIIGVVSSW- 118 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 +IQ+ + Y + + +L ++G F++LD LFY+F+E L+PM+ +IG+WGG R YAA Sbjct: 119 TIQKQVKGYFLLYNLLSMAMMGCFVALDFFLFYVFWEIMLLPMYFLIGIWGGPNREYAAI 178 Query: 166 KFFLYTFFGSIFML-------FAIVVMCWEKKTSSIIDLYAMSKF-PFSI--------QY 209 KFFLYT FGS+FML F+++ T S++ + + + P SI +Y Sbjct: 179 KFFLYTLFGSVFMLLVLIGLYFSVIDPATGNHTFSMVAMVDQANYIPGSIFGPESTFWRY 238 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 +IA F FAIK+PMFPFHTWLP+AHV+APT SV LAG++LK+G YG +R P FP Sbjct: 239 AAFIALFVGFAIKVPMFPFHTWLPDAHVEAPTPISVILAGVLLKLGTYGMLRINFPFFPE 298 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 A VI I IIY +L ++ Q D+KK++AYSSI+HMGYV +G+ + G+ GA Sbjct: 299 VFTDLAYVIGVFGAINIIYGALCALAQLDLKKMVAYSSISHMGYVLLGMAAINTEGMSGA 358 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +FQM +HG +++ LF VGVIYDR H+R I +GGL MP Y+ ++ + A++GLPG Sbjct: 359 LFQMFNHGTITAMLFLLVGVIYDRAHSRQIEKFGGLSSYMPVYSGILTMAFFASLGLPGL 418 Query: 390 SGFIGEFLVIMSVFQNSNT--VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL--- 444 SGFI E + + F + T +A+++ G+V A Y LW +++ G + + + +L Sbjct: 419 SGFISEAFIFVGSFSSEVTRPIAMVSVLGIVFGAAYLLWSLQRMFLGKRRPDALYELHED 478 Query: 445 ---------------KDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 D+ RE M+ P+ ++ +F GIYP+P+ + ++ +++ T Sbjct: 479 ENGHQEIHFHDWTGKNDVDARELSMLIPLGIIVLFLGIYPMPVLGLMTESINKLVDVLT 537 >gi|11467057|ref|NP_042533.1| NADH dehydrogenase, subunit 4 [Acanthamoeba castellanii] gi|3122488|sp|Q37375|NU4M_ACACA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|562038|gb|AAD11826.1| NADH dehydrogenase, subunit 4 [Acanthamoeba castellanii] Length = 497 Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 174/405 (42%), Positives = 272/405 (67%), Gaps = 2/405 (0%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +G+D IS+L ++LT FLTP CIL SW SI+ + ++I + + ++ F LD++ Sbjct: 87 YVIGMDNISLLFLLLTFFLTPICILISWNSIKYRYNSFIICLIFITFILFNIFCVLDLVF 146 Query: 137 FYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYIFFE+ LIPMF++IGVWG +R I+A Y+ F YT GS+ ML I+V+ +T+ I Sbjct: 147 FYIFFESILIPMFILIGVWGSRQRKIHAVYQLFFYTLLGSLLMLLGILVIYSHIQTTDIR 206 Query: 196 DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 LY + F F Q +W +FF +F +K+P+FPFH WLP AHV+APT GSV LAG++LK+G Sbjct: 207 VLYN-TNFSFYRQLILWASFFFAFCVKVPLFPFHIWLPEAHVEAPTVGSVILAGVLLKLG 265 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 YG +RF++P+F A+ +F P+++ L L+ IIY ++ Q D+KK+IAY+S++HM +V Sbjct: 266 TYGLLRFVIPIFCDATYFFLPLVYTLCLLGIIYTCCSTIRQVDLKKVIAYASVSHMSFVI 325 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 +G+F+ G+ G++F MLSHG+VSS LFFC+G +YDR TR + Y GLV MP +++ Sbjct: 326 LGLFTSNIQGIGGSVFLMLSHGIVSSGLFFCIGCVYDRYKTRILRYYSGLVSTMPIFSLC 385 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 + + ++N+ PGTS FIGEFL+++ +F+N++ A++A+F ++L+A+YS+WLY +++F Sbjct: 386 LFILILSNISFPGTSSFIGEFLILLGLFENNHFAALIATFSIILTAVYSIWLYNRIIFNR 445 Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 + D S +E + + +T+ FG+ I PL Sbjct: 446 LVVNYYLRFSDFSKKEFVVGFIFCFITILFGLKGSYIISLIEAPL 490 >gi|254283544|ref|ZP_04958512.1| NADH dehydrogenase i chain m, membrane subunit [gamma proteobacterium NOR51-B] gi|219679747|gb|EED36096.1| NADH dehydrogenase i chain m, membrane subunit [gamma proteobacterium NOR51-B] Length = 499 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 174/438 (39%), Positives = 268/438 (61%), Gaps = 11/438 (2%) Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 D S + + WI F S+ L +DG S+LL+VLT L + +SW ++E + Sbjct: 53 DPASSQWLLYSQTDWIPRFGISFELALDGFSLLLLVLTFVLGLIAVAASWSEVEERHGFF 112 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L + V G FL++D++LF++F+E L+PM+++I +WG R YAA KFF++T Sbjct: 113 QANLLWTLAGVAGVFLAMDLILFFLFWEVMLVPMYLLIAIWGHENRGYAAMKFFIFTQVS 172 Query: 175 SIFMLFAIVVMCWE------KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 + ML AIVV+ W+ K + S DL + P + +W+ + FF +F +K+P FPF Sbjct: 173 GLLMLLAIVVLAWQGAALTGKLSFSYGDLLGL-DLPPELAFWLMLGFFLAFTVKLPGFPF 231 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 HTWLP+AH QAPTAGSV LAGI+LK G YG +RF +PLFP ASQ APV L + IIY Sbjct: 232 HTWLPDAHTQAPTAGSVLLAGILLKTGAYGLLRFTVPLFPEASQTLAPVAMLLGVAGIIY 291 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 +L++ QTD K+L+AYSS++HMG++ +G+++ + ++GA+ QM++HG+ ++ALF G Sbjct: 292 GALLAFAQTDFKRLVAYSSVSHMGFILLGVYAFNELALQGAVMQMVTHGVSTAALFMMAG 351 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 + RLHTRD+ GGL PR M F +A++GLPG F+ EFLV++ +F + Sbjct: 352 ALQHRLHTRDMRKMGGLWQQAPRMGACAMFFVLASLGLPGLGNFVAEFLVLLGLFAVAPW 411 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 + A+ G+V +A+Y+LWL + G + + +Q+ D +RE + + V ++ G+Y Sbjct: 412 MTAAAAVGMVTAAIYALWLMQSAFQG--QPDDDRQMADFGVREMTTMAVMMVALLWMGLY 469 Query: 469 PVPIRDTFSVPLSSIIEN 486 P PI D + P + N Sbjct: 470 PQPILD-LAAPAVQSVSN 486 >gi|78221396|ref|YP_383143.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter metallireducens GS-15] gi|78192651|gb|ABB30418.1| NADH dehydrogenase subunit M [Geobacter metallireducens GS-15] Length = 496 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 192/492 (39%), Positives = 298/492 (60%), Gaps = 17/492 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVF------ 55 + P L+I+ FLP G + + C R S VALG + + ++ Sbjct: 3 DYPILTILIFLPLAGCLCL--APVWHC-RTSARAVALGFAVAELALAAWLLVAATGMPAA 59 Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 + + + E WI+ F Y LG+DGIS+L+V LT F+T + SW+++ E + Sbjct: 60 PGAPTGYFLWEDAVWIERFGIRYLLGMDGISLLMVALTAFITVVAMAVSWRAVTERTALH 119 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L++ES ++G FL+LD++LFY+F+E LIPMF +IG+WG RIY+A KFFLYT G Sbjct: 120 YFLILLMESGLMGVFLALDLVLFYLFWEVMLIPMFFLIGIWGHGRRIYSAVKFFLYTLAG 179 Query: 175 SIFMLFAIV-VMCWEKKTSSI----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 S+ ML AI+ V + I + L A + + W++ AF +FAIK P+FP H Sbjct: 180 SLLMLLAIIGVYLIHGDATGIYTFTLPLLAKAPIAHAAAPWLFGAFLLAFAIKFPLFPVH 239 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+AH APTAGSV LA ++LK G YG +RF PLFP A++ F P I L+++ I+YA Sbjct: 240 TWLPDAHTDAPTAGSVILAALLLKTGAYGLVRFGYPLFPEAAKGFTPFISALAVVGILYA 299 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 S V+ Q D+K+++AYSS+ HMG+V +GI S + G++ QM++HG+ + ALF VG+ Sbjct: 300 SWVAYAQEDMKRMVAYSSVGHMGFVALGIASWSPVALSGSILQMVNHGVTTGALFALVGM 359 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + +R TR+I AYGG+ P+ A ++F M + GLPG + F GEFL++ VF+ + Sbjct: 360 LDERTDTREIAAYGGVWGKAPKLAFFFLLFAMTSAGLPGLNNFTGEFLILAGVFRTTPAA 419 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A +A G+VL +Y++ L ++V+F + + +L D++LRE ++ +A + V+ G++P Sbjct: 420 AAIAFIGIVLPLIYTVRLVQEVLFQTER--RPLRLPDVTLREEALLAVLATIDVYIGVHP 477 Query: 470 VPIRDTFSVPLS 481 P+ D VP++ Sbjct: 478 KPLLDILKVPVA 489 >gi|109156408|ref|YP_654399.1| NADH dehydrogenase subunit 4 [Porites porites] gi|108744154|gb|ABG02373.1| NADH dehydrogenase subunit 4 [Porites porites] Length = 491 Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 207/476 (43%), Positives = 295/476 (61%), Gaps = 12/476 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V FL F+G+ ++ S + VAL S + +L +W FD FQ I Sbjct: 8 LSLVFFLLFMGIINVMKVSREDNVKLK--RVALEWSLAILLGALVLWGAFDL-EGQFQTI 64 Query: 66 EYYHW-IDYFCSYHLG-----VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 W I ++ G +DG S+ VLTT L P CIL SWKSI+ F+E+++ L Sbjct: 65 NRIEWVISPGLNFQWGPGFFALDGASLFFFVLTTLLIPICILISWKSIKHLFKEFLLCLL 124 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFM 178 LE+++IG FL LD+LLFYI FE LIPMF++IGVWG E++ A+Y FF YTF GS+FM Sbjct: 125 FLEALLIGVFLVLDLLLFYILFEGILIPMFLLIGVWGSREEKVRASYYFFFYTFAGSVFM 184 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L I + T+ L + K P Q W+ FF S A+KIP PFH WLP AHV+ Sbjct: 185 LLGIFQLYSVTGTTDYQILLNI-KLPVITQKWVLAGFFLSLAVKIPQIPFHIWLPQAHVE 243 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP +GSV LAGI+LK+GGYG +RF P+ P AS+YFAP+I L ++A+IY L++ Q D Sbjct: 244 APVSGSVILAGILLKLGGYGFLRFSWPILPAASEYFAPLIIMLGVVAVIYGGLLTCRQVD 303 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 K+LIAYSS+AHMG V +G+F+ G+ A+F ML+HG VSSALF + +Y+R HTR Sbjct: 304 FKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFMMLAHGFVSSALFIAITYLYERHHTRL 363 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I Y G+ MP + +M++ ++ NMG+P + F+GEF +++ + + + VLA+ G+V Sbjct: 364 IKYYRGITLTMPIFVCIMLILSLTNMGIPLSCNFVGEFFSLLAAVEYNLGLGVLATSGMV 423 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 SA YSL+LY ++ FG + + ++DL+ RE + P+ + V FGI+P + D Sbjct: 424 WSAAYSLYLYNRISFG-AASNYLLYIRDLNRREVLAISPLVIAVVVFGIFPFVLID 478 >gi|315453241|ref|YP_004073511.1| NADH-ubiquinone oxidoreductase [Helicobacter felis ATCC 49179] gi|315132293|emb|CBY82921.1| NADH-ubiquinone oxidoreductase [Helicobacter felis ATCC 49179] Length = 498 Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 191/491 (38%), Positives = 294/491 (59%), Gaps = 23/491 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKGRSSFQ 63 LS++ LP +G + G R G+ + + I ++W +FD ++ Q Sbjct: 12 LSVLILLPMVGALPLF-------GMRDDHAKTYGVMVAGVELILVFWLWVLFDPAQAGMQ 64 Query: 64 MIEYYHW---IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 E Y +YH+G+DGIS+ L+VL+ F+ C L + EN + +IA L+ Sbjct: 65 FEEVGALGFLSQYGIAYHVGIDGISLFLLVLSAFVIFLCALY----VHENQQSMLIALLL 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +E M++G F +L+++ FY+F+E SL+P+ +IG +G S R+Y+ KFFLYTF S+FML Sbjct: 121 VEGMLMGVFSALNLISFYLFWEVSLLPVLYMIGRFGVSLRVYSGLKFFLYTFVASLFMLL 180 Query: 181 AIVVMCWEKKTSS---IIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 I+ + + + DLY + + P +++W+ +AFF A+KIP+FP H+WLP+A Sbjct: 181 GILYCGYAYASVAGGWSFDLYDLGQVVLPDHVRFWVALAFFLGIAVKIPIFPLHSWLPHA 240 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 + AP GSV LA ++ KMG Y +RF +PLFP Q F + L+L +IYA +++ Sbjct: 241 YGNAPILGSVVLAALLSKMGTYALLRFFIPLFPECVQTFFLPLCVLALCMVIYAGILACA 300 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+LIAYSS++HMG +GI++ GV GA+F ++SHGLVSSALF VG+ Y R Sbjct: 301 QKEMKRLIAYSSMSHMGVALLGIYALNVEGVGGALFTLISHGLVSSALFLLVGIFYQRYG 360 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 + I + G+ H+MP YA M+ T+AN+GLP TS F+GEFL ++ FQ S +A++A Sbjct: 361 SSKIALFRGMAHSMPVYATFFMIATLANVGLPLTSAFVGEFLSLLGFFQKSPILAIVAGS 420 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 +VLSA+Y L LY+KV FG + V L DLS +R ++ + +FFGIYP P+ Sbjct: 421 TIVLSAIYMLALYKKVFFGAPRKSLV--LSDLSWGQRGILGILMAAILFFGIYPKPLLSA 478 Query: 476 FSVPLSSIIEN 486 F +++N Sbjct: 479 FEASTKLLVQN 489 >gi|226944929|ref|YP_002800002.1| NADH dehydrogenase subunit M [Azotobacter vinelandii DJ] gi|226719856|gb|ACO79027.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Azotobacter vinelandii DJ] Length = 509 Score = 333 bits (853), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 183/428 (42%), Positives = 268/428 (62%), Gaps = 15/428 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI+ F HL +DG+SIL+VVLT L +L SWK IQ+ + + + + V+G Sbjct: 72 WIERFGIEVHLALDGLSILMVVLTGLLGVLSVLCSWKEIQQKVGFFHLNLMWILGGVVGV 131 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++D+ LF+ F+E L+PM+ +I +WG GS RI AA KFF++T + ML AI+ Sbjct: 132 FLAVDLFLFFFFWEMMLVPMYFLIALWGHSGSTGSTRITAATKFFIFTQASGLVMLVAIL 191 Query: 184 VMCWEKKTSSII------DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + + + + DL P ++ + + FF SFA+K P+ P H+WLP+AH Sbjct: 192 GLVFVHYSQTGVLTFNYADLLKTQLEP-GTEFLLMLGFFISFAVKFPVIPVHSWLPDAHA 250 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L + AI+Y +LVS QT Sbjct: 251 QAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMGLGVFAIVYGALVSFAQT 310 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIK+L+AYSS++HMG++ I I+SG + ++GA+ QM++HGL ++ALF G +Y+RLHTR Sbjct: 311 DIKRLVAYSSVSHMGFILIAIYSGSQIALQGAVVQMIAHGLSAAALFILCGQLYERLHTR 370 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 D+ GG+ MP V + F A +GLPGT F+GEFLV++ F + + VLAS G+ Sbjct: 371 DMREMGGIWGRMPWLPAVSLFFAAAALGLPGTGNFVGEFLVLIGTFPQAPWITVLASTGL 430 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 VL ++YSL + + FG ++ E L L+ RE MV +A L + G+YP P+ DT + Sbjct: 431 VLGSVYSLIMIHRAYFGPARAEGA--LLGLNTRELSMVLGLAGLLILLGVYPQPVLDTSA 488 Query: 478 VPLSSIIE 485 + + + Sbjct: 489 ASMQGVQQ 496 >gi|77019998|ref|YP_337880.1| NADH dehydrogenase subunit 4 [Aspergillus niger] gi|45504613|gb|AAS66784.1| NADH dehydrogenase subunit 4 [Aspergillus niger] gi|75993218|gb|ABA33723.1| NADH dehydrogenase subunit 4 [Aspergillus niger] Length = 488 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 192/454 (42%), Positives = 284/454 (62%), Gaps = 5/454 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL S IN I SL ++ +FD S+ IE ++ I YF Y LGVDG+SI V+ TT + Sbjct: 35 IALLTSIINLIISLVMFIIFDFSSKSYSFIEEHYQISYFDIY-LGVDGLSIYFVLWTTII 93 Query: 96 TPFCILSSWKSI-QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 P ILS+W SI +N +++ L+LE++++ FL LD+LLFYIFFE+ L P+F++IG+ Sbjct: 94 MPIAILSNWNSITSKNVLSFVVIMLLLETLLLAVFLVLDVLLFYIFFESILPPLFLLIGL 153 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 +G S ++ A++ FLYT FGS+FML +I+ M T+ D + S F + Q +++ Sbjct: 154 FGSSNKVRASFYLFLYTLFGSLFMLLSIIAMSSIMGTTDF-DALSKSNFSYITQLFLFYG 212 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 F +FA+K P+ +TWL AHV +P +GS+ LAGI+LK+ YG R +LPL P AS + Sbjct: 213 IFIAFAVKTPVLFLYTWLLKAHVVSPKSGSIILAGIVLKLSLYGIFRLILPLLPTASTNY 272 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 +I+ + LI I+YAS ++ DIK+LIAYSS++H IG FS G+EG++ L Sbjct: 273 TDIIYVIGLITILYASFSTLRTIDIKELIAYSSVSHAAVYLIGAFSNTIQGIEGSIALGL 332 Query: 335 SHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +HG VSS LF C G++YDR TR I Y GL MP ++V+ + ++ N G P T F+ Sbjct: 333 AHGFVSSGLFICAGGILYDRSSTRLITYYRGLAQIMPIFSVLFFILSLGNSGTPLTLNFL 392 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRER 452 GEF+ + VF+ + VLAS +V SA Y++++Y ++VFG S + + D++ RE Sbjct: 393 GEFMSLYGVFERMPILGVLASSSIVFSAAYTIFMYNRIVFGGSYSVYFKDNIGDVTRREF 452 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 M+ +LTV FGIYP PI D +SS+I N Sbjct: 453 IMLLIFVILTVLFGIYPAPILDGLHYSVSSLIYN 486 >gi|29126628|ref|NP_803531.1| NADH dehydrogenase subunit 4 [Monoblepharella sp. JEL15] gi|29029526|gb|AAO64976.1| NADH dehydrogenase subunit 4 [Monoblepharella sp. JEL15] Length = 457 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 173/407 (42%), Positives = 262/407 (64%), Gaps = 21/407 (5%) Query: 43 INFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILS 102 + I S ++ +++ + FQ F LG+DG+S++L+VLTTFL P C++ Sbjct: 34 LTLIHSFYLILIYNPNSAQFQ----------FQYMALGIDGLSLVLIVLTTFLMPICLIV 83 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERI 161 + ++ L +E++++ FL LD+++FY+ FE+ LIP+F ++G + G + R+ Sbjct: 84 E--------PDLVLPLLAIEALLMAVFLVLDVMIFYLCFESVLIPLFYLMGKYKGRARRL 135 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAI 221 AA FLYT GS+ ML I ++ E T+++ L + P Q +++ FF +FA+ Sbjct: 136 SAALSLFLYTLAGSLIMLICIGLLYLEASTTNLQALLTVPIHP-DYQLLLFLGFFIAFAV 194 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 KIPM PFH WLP AHV++PT GS+ LAGI+LK+GGYG +RF LPLFP AS Y+ P + L Sbjct: 195 KIPMIPFHLWLPEAHVESPTGGSILLAGILLKLGGYGFLRFSLPLFPYASDYYQPFVAVL 254 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +LI I+YA L ++ Q D+KK+IAYSS+AHM +GIF+ G+EG++ M++HGLVS Sbjct: 255 ALIGIVYAGLTAIRQIDMKKIIAYSSVAHMNLAMLGIFANNLLGIEGSIHMMVAHGLVSG 314 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF+CVG++YDR HTR + Y GL MP +A+ + FT++N+ PG++ FI EFLV Sbjct: 315 ALFYCVGLLYDRYHTRLVRYYRGLAIYMPLFAIFFLFFTLSNVAFPGSANFIAEFLVFTG 374 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 V + +A +AS G++L+A YS+WLY +V FG S + Q DL+ Sbjct: 375 VMDINPFLAFIASLGLLLTATYSMWLYNRVCFG-STTSYISQFNDLT 420 >gi|238920556|ref|YP_002934071.1| NADH dehydrogenase subunit M [Edwardsiella ictaluri 93-146] gi|238870125|gb|ACR69836.1| NADH-quinone oxidoreductase subunit m [Edwardsiella ictaluri 93-146] Length = 507 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 188/465 (40%), Positives = 280/465 (60%), Gaps = 19/465 (4%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYH------WIDYF-CSYHLGVDGISILL 88 +AL + + SL++W + G + I + WI S+HL +DG+S+L+ Sbjct: 31 IALLAMGLTLVLSLYLWLQGNYGLTQAAGIPQWQSSFMVPWIPSLGISFHLALDGLSLLM 90 Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 VVLT L IL SW I + + L + + V G FL++DM LF+ F+E L+PM Sbjct: 91 VVLTALLGVLAILCSWNEIHRYQGFFHLNLLWILAGVFGVFLAIDMFLFFFFWEMMLVPM 150 Query: 149 FVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAM 200 + +I +WG G RI AA KFF+YT + ML AI + W ++ + D + Sbjct: 151 YFLIALWGHKGSDGKTRITAATKFFIYTQASGLVMLIAIFGLVWVHYNATGVLSFDYEVL 210 Query: 201 SKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 P S +QY + + FF SFA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG Sbjct: 211 LNTPMSHTVQYLLMLGFFISFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYG 270 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +RF LPLFP AS FAP+ L +I I Y + ++ +QTDIK+LIAY+S++HMG+V I I Sbjct: 271 LLRFSLPLFPQASHEFAPIAMALGVIGIFYGAWMAYIQTDIKRLIAYTSVSHMGFVMIAI 330 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 +SG + +GA+ QM++HGL ++ LF G +Y+RLHTRD+ GGL + + + Sbjct: 331 YSGSQLAFQGAVVQMIAHGLSAAGLFIITGQLYERLHTRDLREMGGLWGRLKYLPALSLF 390 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 F +A +G+PGT F+GEF+++ FQ V+ASFG+V +++YSL + ++ +GV K Sbjct: 391 FAVATLGMPGTGNFVGEFMIMFGSFQVVPVTTVVASFGLVFASVYSLVMMQRAYYGVPKS 450 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 + Q L +LS+RE ++ + VL V GI+P P+ DT S + +I Sbjct: 451 D--QPLANLSVRELSLILLLVVLLVLLGIFPQPVLDTSSAAMGNI 493 >gi|21673605|ref|NP_661670.1| NADH dehydrogenase I, subunit 4 [Chlorobium tepidum TLS] gi|21646719|gb|AAM72012.1| NADH dehydrogenase I, subunit 4 [Chlorobium tepidum TLS] Length = 545 Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 205/542 (37%), Positives = 299/542 (55%), Gaps = 65/542 (11%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS--- 60 LS + FLP + VIL SS R ALG + ++ +W +D + Sbjct: 2 LSFIVFLPIIAGLVILAVPSSQKQIIRIVSLLAALG----QGVLAVLIWRHYDPTMAGIV 57 Query: 61 ---------SFQMIEYYHWIDY--------FCSYHLGVDGISILLVVLTTFLTPFCILSS 103 SFQMIE WI Y LGVDG+SI +V+LT ++ +LSS Sbjct: 58 AAPGGSPVGSFQMIERIPWISLDLGSFGPLNIEYFLGVDGLSITMVLLTALISIIGVLSS 117 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYA 163 W IQ+ + Y I + +L + ++G F++LD LFY+F+E L+PM+ +IG+WGG R YA Sbjct: 118 WP-IQKQVKGYFILYNLLSTAMMGCFVALDFFLFYVFWELMLLPMYFLIGIWGGPNREYA 176 Query: 164 AYKFFLYTFFGSIFML-------FAIVVMCWEKKTSSIIDLYAMSKF-------PFSIQY 209 A KFFLYT FGS+FML F++ T S++ + + + P S+ Sbjct: 177 AIKFFLYTLFGSVFMLLVMIGLYFSVTDPLTGHHTFSLVAMADQANYIKGTILGPDSVT- 235 Query: 210 WMWIAF---FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 W ++AF F FAIK+PMFPFHTWLP+AHV+APT SV LAG++LK+G YG +R PL Sbjct: 236 WRYVAFIVLFVGFAIKVPMFPFHTWLPDAHVEAPTPISVILAGVLLKLGTYGMMRINFPL 295 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 FP Q VI I IIY + ++ Q D+KK++AYSSI+HMGYV +G+ + G+ Sbjct: 296 FPEVYQAGLYVIGVFGAINIIYGAFCALAQQDLKKMVAYSSISHMGYVLLGLAAANTEGM 355 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 GA++QM +HG +++ LF VGVIYDR H R I +GGL MP Y ++V A++GL Sbjct: 356 IGALYQMFNHGTITAMLFLLVGVIYDRAHARQIDKFGGLATYMPVYTGFVIVAWFASLGL 415 Query: 387 PGTSGFIGEFLVIMSVFQNSNT--VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL 444 PG SGFI E LV + F T +A+++ G+V A Y LW +++ G K + + L Sbjct: 416 PGLSGFISEALVFVGAFSAPVTRPIAMVSVLGIVFGAAYLLWSLQRMFLGKRKPDALYDL 475 Query: 445 K------------------DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + DL RE M+ P+ ++ + GIYP+P+ + ++ +++ Sbjct: 476 EVDVDGHEHIHFHDWKGKLDLDARELTMLVPLVIIVIALGIYPMPVMGLITTSVNKLVQV 535 Query: 487 YT 488 T Sbjct: 536 LT 537 >gi|254415342|ref|ZP_05029103.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Microcoleus chthonoplastes PCC 7420] gi|196177817|gb|EDX72820.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Microcoleus chthonoplastes PCC 7420] Length = 536 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 188/494 (38%), Positives = 287/494 (58%), Gaps = 25/494 (5%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 +P+++ + LP L I L G R + ALG+ NF+ ++ W +D Sbjct: 5 QIPWITTIILLPLLASLAIPLIPDKEGKTVRWY---ALGVGMANFLLTIHAFWRHYDLQN 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S FQ+ E Y WI ++ +GVDG+S+ L+VL+ F+T IL+SWK + R + + Sbjct: 62 SQFQLQETYSWIPQLGLNWSVGVDGLSMPLIVLSGFVTTLAILASWK-VNRKPRLFYVLM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LV+ S IG F + D+LLF++ +E LIP++++I +WGG +R+YAA KF LYT GSIF+ Sbjct: 121 LVMYSAQIGVFAAQDLLLFFLMWELELIPVYLLISIWGGEKRLYAATKFILYTAAGSIFI 180 Query: 179 LFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L A + M + T + + A +P ++ ++ F ++ +K+P+FP HTWLP+AH Sbjct: 181 LVAALAMAFYGDTVTFDMQQLAQKHYPIGMELAVYAGFLIAYGVKLPIFPLHTWLPDAHS 240 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 QA S+ LAG++LKMGGYG IR + + P A FAPV+ L ++ IIY +L + Q Sbjct: 241 QASAPVSMILAGVLLKMGGYGLIRMNMEMLPDAHIRFAPVLAVLGVVNIIYGALTAFAQD 300 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ +AYSSI+HMG+V +GI S G GAM QM+SHGL+++ALFF GV YDR HT Sbjct: 301 NLKRRLAYSSISHMGFVLVGIASFTALGTNGAMLQMISHGLIAAALFFLSGVTYDRTHTL 360 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI--MSVFQNSNT-----VA 410 + GG+ MP+ + MA++ LPG SGF+GE + MS N+ + Sbjct: 361 AMENMGGMAKQMPKVFALFTAGAMASLALPGMSGFVGELSIFLGMSTSDAYNSSFKVVMV 420 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLTVF 464 +LA+ G++L+ +Y L + R+V +G +K E D + RE C++ PI V Sbjct: 421 LLAAVGLILTPIYLLSMLRQVFYGTAKAELAMDNYFGDANPREIFIALCLLIPI----VG 476 Query: 465 FGIYPVPIRDTFSV 478 G+YP T+ V Sbjct: 477 IGLYPKVATQTYDV 490 >gi|271962167|ref|YP_003336363.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] gi|270505342|gb|ACZ83620.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] Length = 509 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 180/497 (36%), Positives = 298/497 (59%), Gaps = 19/497 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS- 61 +P+LSI+ +P LG + + ++ +AL +S + + + + F+ ++ Sbjct: 1 MPWLSILMAVPVLGAVGVSLTKSDKLAKQ----LALAVSLVVLALTGVMAAQFNPSSATR 56 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI---------QENF 111 FQ E Y WI F Y +GVDGI+++L+ L+ L P IL+SW + + Sbjct: 57 FQFAEVYDWIPRFGVHYGVGVDGIALVLIALSAVLVPIVILASWHDADGTGAAAPPKRSV 116 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 + Y LVLE+M+IG F + D+ LFY+FFEA LIPM+ +IG +GG++R YAA KF LY+ Sbjct: 117 KTYFALLLVLEAMMIGVFAATDVFLFYVFFEAMLIPMYFMIGSYGGAQRSYAAVKFLLYS 176 Query: 172 FFGSIFMLFAIVVM--CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 FG + ML A++ + +K T +L + + P + Q W+++ FF +FA+K P++PFH Sbjct: 177 LFGGLLMLVAVIALYVIADKGTFMFPELVGVIQDP-NTQKWLFLGFFIAFAVKAPLWPFH 235 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+A QAP +V L G++ K+G YG +RF L LFP A+++F P++ LS++ I+Y Sbjct: 236 TWLPDAAAQAPAGAAVLLVGVLDKVGTYGMLRFCLELFPDAAKFFTPLVIVLSVVGIVYG 295 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 ++V++ QTDIK+LIAY+SI+H G++ +G+F+ G GA M++HG + ALF G Sbjct: 296 AIVAIGQTDIKRLIAYTSISHFGFIALGVFAMTAHGGAGATLYMVNHGFSTGALFLIAGF 355 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + R + I YGG+ P A ++ ++ + LPG S F+ EF+V+M ++ Sbjct: 356 LIYRRGSSQIADYGGVQKVAPLLAGTFLIAGLSGLSLPGLSSFVSEFMVLMGTYERYAVP 415 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A++A+ GV+L+A+Y LW+Y++ + G E V+ DL++RER +V P+ + + G +P Sbjct: 416 AIIATSGVILAAIYILWMYQRTMTG-PTAESVKGFTDLNIRERWVVAPLIAVIIALGFFP 474 Query: 470 VPIRDTFSVPLSSIIEN 486 P+ D + + + N Sbjct: 475 KPVLDVINPAVDQTLSN 491 >gi|222054373|ref|YP_002536735.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter sp. FRC-32] gi|221563662|gb|ACM19634.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter sp. FRC-32] Length = 496 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 199/488 (40%), Positives = 301/488 (61%), Gaps = 10/488 (2%) Query: 2 NLPFLSIVTFLPFLGVFVIL-FSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 LP LSI+ FLP +G +L F R AL I + L V SV + Sbjct: 3 ELPLLSILVFLPLVGGLCLLPFGQQHRIARIIAIATALAELLICVMLLLSVGSVTNAVPG 62 Query: 61 -SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + ++E Y WID Y LG+DGIS+L+V+LT+ +T +L SW+SI++ + Sbjct: 63 LALLLVEDYPWIDRLGIRYTLGLDGISLLMVLLTSLITLMAMLVSWRSIKDRVALHYATI 122 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L++E+ ++G FLSLD++LFY+F+E LIPMF++IG+WG RIY+A KFFLYT GS+ M Sbjct: 123 LIMETGIMGVFLSLDLVLFYLFWEVMLIPMFLLIGIWGHGRRIYSAVKFFLYTLAGSLLM 182 Query: 179 LFAIV---VMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 L AI+ ++ + S L A+ ++ + W++ AF +FAIK+P+FP HTWLP Sbjct: 183 LLAIIALYLIHGAQSGSYTFALPALLQTRIEPTTAGWLFAAFLLAFAIKVPLFPVHTWLP 242 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH APTAGSV LAG++LK G YG IRF PLFP A++ A ++F L++I IIY S V+ Sbjct: 243 DAHTDAPTAGSVILAGLLLKTGAYGLIRFGFPLFPQAAKASATLLFTLAIIGIIYGSWVA 302 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 Q D+K+L+AYSS+ HMG+V +GI + + GA+ QM++HG+ + ALF VG++ +R Sbjct: 303 YAQRDMKRLVAYSSVGHMGFVALGIAAWTPLALSGAILQMVNHGITTGALFALVGMLDER 362 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 TR+I AYGGL +P + + F MA+ GLPG + F GEF+++ F + + Sbjct: 363 TGTREIDAYGGLWGKIPMLSFFFLFFAMASAGLPGLNNFAGEFIILTGTFPIAPWAVAVG 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 FGVVL +Y + L ++V+F + + L DLSLRE ++ +A++ ++ G++P P+ Sbjct: 423 FFGVVLGLVYLVRLVQEVLF--VRERQALTLPDLSLREGALLTVLALMALYLGVHPGPVL 480 Query: 474 DTFSVPLS 481 + P+ Sbjct: 481 ELVQAPVQ 488 >gi|81230386|ref|YP_398771.1| NADH dehydrogenase subunit 4 [Aspergillus tubingensis] gi|45504611|gb|AAS66783.1| NADH dehydrogenase subunit 4 [Aspergillus tubingensis] gi|77157974|gb|ABA62002.1| NADH dehydrogenase subunit 4 [Aspergillus tubingensis] Length = 488 Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 192/454 (42%), Positives = 285/454 (62%), Gaps = 5/454 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL S IN I SL ++ +FD S+ IE ++ I YF Y LGVDG+SI V+LTT + Sbjct: 35 IALLTSIINLIISLVMFIIFDFSSKSYSFIEEHYPISYFDIY-LGVDGLSIYFVLLTTII 93 Query: 96 TPFCILSSWKSI-QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 P ILS+W SI +N +++ L+LE++++ FL LD+LLFYIFFE+ L P+F++IG+ Sbjct: 94 MPIAILSNWNSITSKNVLSFVVIMLLLETLLLAVFLVLDVLLFYIFFESILPPLFLLIGL 153 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 +G S ++ A++ FLYT FGS+FML +I+ M T+ D + S F + Q +++ Sbjct: 154 FGSSNKVRASFYLFLYTLFGSLFMLLSIIAMSSIMGTTDF-DALSKSNFSYITQLFLFYG 212 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 F +FA+K P+ +TWL AHV++P +GS+ LAGI+LK+ YG R +LPL P AS + Sbjct: 213 IFIAFAVKTPVIFLNTWLLKAHVESPLSGSIILAGIVLKLSLYGIFRLILPLLPKASLNY 272 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 +I+ + L I+YAS ++ DIK+LIAYSS++H IG FS G+EG++ L Sbjct: 273 TYIIYVIVLKTILYASFSTLRTIDIKELIAYSSLSHAAVHLIGAFSNTIQGIEGSIALGL 332 Query: 335 SHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +HG VSS LF C G++YDR TR I Y GL MP ++V+ + ++ N G P T F+ Sbjct: 333 AHGFVSSGLFICAGGILYDRSSTRLITYYRGLAQIMPIFSVLFFILSLGNSGTPLTLNFL 392 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRER 452 GEF+ + VF+ + VLAS +V SA Y++++Y ++VFG S + + D++ RE Sbjct: 393 GEFMSLYGVFERMPILGVLASSSIVFSAAYTIFMYNRIVFGGSYSVYFKDNIGDVTRREF 452 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 M+ +LTV FGIYP PI D +SS+I N Sbjct: 453 IMLLIFVILTVLFGIYPAPILDGIHYSVSSLIYN 486 >gi|109156521|ref|YP_654386.1| NADH dehydrogenase subunit 4 [Pavona clavus] gi|108744140|gb|ABG02360.1| NADH dehydrogenase subunit 4 [Pavona clavus] Length = 491 Score = 328 bits (842), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 209/476 (43%), Positives = 293/476 (61%), Gaps = 12/476 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L +V FL F+G+ ++ S + VAL S I +L +W FD FQ+I Sbjct: 8 LGLVFFLLFMGIINVMKVSREDSVKLK--RVALEWSLAVLISALVLWGAFDL-EGQFQII 64 Query: 66 EYYHWI---DYFCSYHLGV---DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 WI + GV DG S+ VLT L P CIL SWKSI+ F+E+++ L Sbjct: 65 NRIEWIISPALNLQWGPGVFALDGASLFFFVLTALLIPICILISWKSIRHLFKEFLLCLL 124 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFM 178 LE++++G FL LD+LLFYI FE LIPMF++IGVWG E++ A+Y FF YTF GS+FM Sbjct: 125 FLEALLVGVFLVLDLLLFYILFEGILIPMFLLIGVWGSREEKVRASYYFFFYTFAGSVFM 184 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L I + T+ L + K P + Q W+ FF S A+KIP PFH WLP AHV+ Sbjct: 185 LLGIFQVYSITGTTDYQILLNI-KLPVTTQKWVLAGFFLSLAVKIPQIPFHIWLPQAHVE 243 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP +GSV LAGI+LK+GGYG +RF P+ P AS+YFAP++ L ++AI+Y L++ Q D Sbjct: 244 APVSGSVILAGILLKLGGYGFLRFSWPILPAASEYFAPLVVMLGVVAIVYGGLLTCRQVD 303 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 K+LIAYSS+AHMG V + +F+ G+ GA+F ML+HG VSSALF + +Y+R HTR Sbjct: 304 FKRLIAYSSVAHMGLVPLSLFTHTIEGLVGAVFMMLAHGFVSSALFIAITYLYERHHTRL 363 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I Y G+ MP + +M+V ++ NMG+P + F+GEF +++ Q + + VLA+ GVV Sbjct: 364 IKYYRGVTLTMPLFVCIMLVLSLTNMGIPLSCNFVGEFFSLLAAVQYNFGLGVLATSGVV 423 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 SA YSL+LY ++ FG + + ++DL+ RE + P+ V FGI+P I D Sbjct: 424 WSAAYSLYLYNRISFG-AASNYLLFIRDLNRRELWALSPLVVAIFLFGIFPFIIID 478 >gi|238062223|ref|ZP_04606932.1| proton-translocating NADH-quinone oxidoreductase, chain M [Micromonospora sp. ATCC 39149] gi|237884034|gb|EEP72862.1| proton-translocating NADH-quinone oxidoreductase, chain M [Micromonospora sp. ATCC 39149] Length = 511 Score = 328 bits (842), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 191/509 (37%), Positives = 293/509 (57%), Gaps = 18/509 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGR 59 N PFLS++T P +G V+ RR VA G S + S+ +W F G Sbjct: 3 NFPFLSVLTVAPLVGALVVAVLPR----RRPDLAKQVAFGWSLLVLALSVVMWLEFSTGG 58 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE---YM 115 Q E Y WI + + DGI++++++L L P IL+SW + + R Y Sbjct: 59 ERLQFRESYTWIPQWDARFTFAADGIALVMLMLIAVLVPLVILASWHDAESSKRSVPVYF 118 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 LVLES +IG F + D+ LFY+FFE L+PM+ +IG +GG +R YAA KFFLY+ G Sbjct: 119 ALLLVLESTMIGVFAAADVFLFYVFFEVMLVPMYFLIGSYGGHQRQYAAVKFFLYSLVGG 178 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLP 233 +FML A V+ W + D A+++ S + W+++ FF +FAIK P FPFHTWLP Sbjct: 179 LFML-AAVIGLWVVGGKTF-DWQALTQVDISTGTERWLFLGFFLAFAIKAPFFPFHTWLP 236 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +A AP + L G++ K+G +G +R+ LPLFP AS++FAP L +I IIYA+L++ Sbjct: 237 DAGGAAPAGAAALLVGVLDKVGTFGILRYCLPLFPEASKWFAPWALALGVIGIIYAALLA 296 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + Q D+K+L++Y+SIAH G++ +GIF+ GA+ ML+HGL + LF VG++ R Sbjct: 297 VGQNDLKRLVSYTSIAHFGFIGVGIFAFTTQAGTGAVLYMLNHGLATGLLFLVVGMLVAR 356 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 + I +GG +P A V+ +A++ LPGT+ F+ EFLV++ F + VAV+A Sbjct: 357 RGSALISDFGGAGKLVPLLAGVLFFAGLASLALPGTAPFVSEFLVLIGTFTVNKPVAVIA 416 Query: 414 SFGVVLSALYSLWLYRKVVFGV---SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+A Y LW+ ++ G + E +DL+LRE+ +V P+ L V G YP Sbjct: 417 TLGIILAAAYVLWMVQRTTQGTLNPALAEVEPMRRDLNLREKVVVAPLIALIVLLGFYPK 476 Query: 471 PIRDTFSVPLSSIIENYTLKTGYSDSVKG 499 P+ D + + + +E+ +T + V G Sbjct: 477 PVTDVINPAVRATMEDVG-RTDPAPEVGG 504 >gi|159039963|ref|YP_001539216.1| proton-translocating NADH-quinone oxidoreductase, chain M [Salinispora arenicola CNS-205] gi|157918798|gb|ABW00226.1| proton-translocating NADH-quinone oxidoreductase, chain M [Salinispora arenicola CNS-205] Length = 510 Score = 328 bits (842), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 188/496 (37%), Positives = 292/496 (58%), Gaps = 17/496 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGR 59 + PFLS++T P +G V+ RR VALG S + S+ +W + G Sbjct: 3 DFPFLSVLTVAPLVGALVVAVLPR----RRPELAKQVALGWSLLVLALSVVMWVTWQTGG 58 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE---YM 115 FQ E Y WI ++ ++ DGI++++++L L P IL+SW + + R Y Sbjct: 59 ERFQFRESYPWIPNWGVNFTFAADGIALVMLMLIAVLVPLVILASWHDAESSKRSVPVYF 118 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 LVLE +IG F + D+ LFY+FFE L+PM+ +IG +GG +R YAA KFFLY+ G Sbjct: 119 ALLLVLECTMIGVFAAADVFLFYVFFEVMLVPMYFLIGSYGGHQRQYAAVKFFLYSLVGG 178 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLP 233 +FML A V+ W + D A+S+ S + W+++ FF +FAIK P FPFHTWLP Sbjct: 179 LFML-AAVIGLWVVGGKTF-DWVALSQVDISTGAERWLFLGFFVAFAIKAPFFPFHTWLP 236 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +A AP + L G++ K+G +G +R+ LPLFP A+++FAP L LI IIYA+L++ Sbjct: 237 DAGGAAPAGAAALLVGVLDKVGTFGILRYCLPLFPDAAKWFAPWALALGLIGIIYAALLA 296 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + Q D+K+L++Y+SIAH G++ +GIF+ GA+ M++HGL + LF VG++ R Sbjct: 297 VGQNDLKRLVSYTSIAHFGFIGVGIFAFTSQAATGAVLYMVNHGLATGLLFLVVGMLVAR 356 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 + I +GG +P A V+ +A++ LPGT+ FI EFLV++ F + VAV+A Sbjct: 357 RGSALISDFGGAGKLVPLLAGVLFFAGLASLALPGTAPFISEFLVLIGTFSVNKPVAVIA 416 Query: 414 SFGVVLSALYSLWLYRKVVFGV--SKCEKVQQLK-DLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+A Y LW+ ++ G +V +K DL+LRE+ +V P+ L V G YP Sbjct: 417 TLGIILAAAYVLWMVQRTTQGTLNPALTEVDGMKRDLNLREKVVVAPLVALIVLLGFYPK 476 Query: 471 PIRDTFSVPLSSIIEN 486 P+ D + + + +++ Sbjct: 477 PVTDVINPAVQATMQD 492 >gi|325522322|gb|EGD00934.1| proton-translocating NADH-quinone oxidoreductase, chain M [Burkholderia sp. TJI49] Length = 399 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 161/374 (43%), Positives = 254/374 (67%), Gaps = 3/374 (0%) Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF 172 +Y +FL+L +++G F++ D LLF+IFFEA+LIP++++IG WG RI+AA KFF +F Sbjct: 4 QYYASFLILSGLMVGVFVAQDGLLFFIFFEATLIPLYLLIGTWGREHRIHAAVKFFFISF 63 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 GS+ +L ++ + K + + ++ + F+ Q +++ FF +FA+K+PM+P HTWL Sbjct: 64 AGSLLLL-MAILYLYAKSHTFDMAVWRTLQLGFAPQLLVFLGFFAAFAVKVPMWPVHTWL 122 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 + + PT ++ L MLK+GGYG +RF LP+ P AS + AP + LSL AI+YASLV Sbjct: 123 RDVYTDGPTGAALMLG--MLKLGGYGFLRFALPITPDASHFLAPAVISLSLFAIVYASLV 180 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ QTD+ KL+AYS++AHMG VT+G+F + GVEGA+ Q++S+G V+ A+ CV V+ D Sbjct: 181 ALAQTDLGKLLAYSTVAHMGIVTLGLFLFNRIGVEGAIVQLVSYGFVAGAMLLCVSVLVD 240 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R R+I AYGG+ + MPR+A+ +++F+MAN+GLPGTSGF+GEF+VIM + + + L Sbjct: 241 RTKQREIAAYGGVANVMPRFAIFVLLFSMANVGLPGTSGFVGEFMVIMGAIRLNFWIGAL 300 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ ++ SA Y+LW+ ++VVFG ++ QL DLS RE M +A++ + G+YP P Sbjct: 301 AALTLIFSASYTLWMLKRVVFGKVSSPRIAQLADLSRREIVMFASLALVVLMVGVYPKPF 360 Query: 473 RDTFSVPLSSIIEN 486 D + +++ Sbjct: 361 TDAIDPTVGRLLDE 374 >gi|116050635|ref|YP_790546.1| NADH dehydrogenase subunit M [Pseudomonas aeruginosa UCBPP-PA14] gi|313107687|ref|ZP_07793869.1| NADH dehydrogenase I chain M [Pseudomonas aeruginosa 39016] gi|115585856|gb|ABJ11871.1| NADH dehydrogenase I chain M [Pseudomonas aeruginosa UCBPP-PA14] gi|310880371|gb|EFQ38965.1| NADH dehydrogenase I chain M [Pseudomonas aeruginosa 39016] Length = 509 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 196/493 (39%), Positives = 298/493 (60%), Gaps = 26/493 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G F+ + + + +AL T+ I SL++W+ D Sbjct: 1 MILPWLILI---PFIGGFLCWIAEH--SSKTLPRWIALLSMTLVLILSLWIWATGDFQLA 55 Query: 57 ---KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G + + WI+ S HL +DG+S+L+V LT L +L SW IQ Sbjct: 56 PAPGGEPEWTLQFKVLWIERLGISVHLAMDGLSLLMVALTGLLGVLSVLCSWNEIQRRIG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + L + VIG FL++D+ LF+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHSSDDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAI 221 FF++T + ML AI+ + + ++ + D + K S +++ + + FF +FA+ Sbjct: 176 FFIFTQASGLVMLVAILGLVFVNFNATGVITFDYATLLKTQLSPHVEWLLMLGFFVAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H+WLP+AH QAPTAGSV LAGI+LK YG IRF LPLFP AS FAP+ +L Sbjct: 236 KMPVVPVHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLIRFALPLFPNASAEFAPIAMWL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +I I Y +L+S QTDIK+L+AYSS++HMG+V IGI+SG + ++G + QM++HGL ++ Sbjct: 296 GIIGIFYGALLSFAQTDIKRLVAYSSVSHMGFVMIGIYSGSQVALQGVVVQMIAHGLSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL MP + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILCGQLYERLHTRDMRKMGGLWSRMPYLPAISLFFASASLGLPGTGNFVGEFLILIG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F+ + V+A+FG+V +++YSL + + FG S+ + + + L RE MV +AVL Sbjct: 416 AFKVVPVIIVIATFGLVFASVYSLIMIHRAYFGPSQSD--EPILGLDARELSMVLGLAVL 473 Query: 462 TVFFGIYPVPIRD 474 V G+YP P+ D Sbjct: 474 LVLLGVYPQPVLD 486 >gi|152988508|ref|YP_001347922.1| NADH dehydrogenase subunit M [Pseudomonas aeruginosa PA7] gi|150963666|gb|ABR85691.1| NADH dehydrogenase I chain M [Pseudomonas aeruginosa PA7] Length = 509 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 196/493 (39%), Positives = 298/493 (60%), Gaps = 26/493 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G F+ + + + +AL T+ I SL++W+ D Sbjct: 1 MILPWLILI---PFIGGFLCWIAEH--SSKTLPRWIALLSMTLVLILSLWIWATGDFQLA 55 Query: 57 ---KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G + + WI+ S HL +DG+S+L+V LT L +L SW IQ Sbjct: 56 PAPGGEPEWTLQFKVLWIERLGISLHLAMDGLSLLMVALTGLLGVLSVLCSWNEIQRRIG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + L + VIG FL++D+ LF+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHSSDDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAI 221 FF++T + ML AI+ + + ++ + D + K S +++ + + FF +FA+ Sbjct: 176 FFIFTQASGLVMLVAILGLVFVNFNATGVITFDYATLLKTQLSPHVEWLLMLGFFVAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H+WLP+AH QAPTAGSV LAGI+LK YG IRF LPLFP AS FAP+ +L Sbjct: 236 KMPVVPVHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLIRFALPLFPNASAEFAPIAMWL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +I I Y +L+S QTDIK+L+AYSS++HMG+V IGI+SG + ++G + QM++HGL ++ Sbjct: 296 GIIGIFYGALLSFAQTDIKRLVAYSSVSHMGFVMIGIYSGSQVALQGVVVQMIAHGLSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL MP + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILCGQLYERLHTRDMRKMGGLWSRMPYLPAISLFFASASLGLPGTGNFVGEFLILIG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F+ + V+A+FG+V +++YSL + + FG S+ + + + L RE MV +AVL Sbjct: 416 AFKVVPVIIVIATFGLVFASVYSLIMIHRAYFGPSQSD--EPILGLDARELSMVLGLAVL 473 Query: 462 TVFFGIYPVPIRD 474 V G+YP P+ D Sbjct: 474 LVLLGVYPQPVLD 486 >gi|15597844|ref|NP_251338.1| NADH dehydrogenase subunit M [Pseudomonas aeruginosa PAO1] gi|107102168|ref|ZP_01366086.1| hypothetical protein PaerPA_01003218 [Pseudomonas aeruginosa PACS2] gi|218891191|ref|YP_002440057.1| NADH dehydrogenase subunit M [Pseudomonas aeruginosa LESB58] gi|254235629|ref|ZP_04928952.1| NADH dehydrogenase I chain M [Pseudomonas aeruginosa C3719] gi|81857170|sp|Q9I0J0|NUOM_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit M; AltName: Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1 subunit M gi|9948717|gb|AAG06036.1|AE004693_7 NADH dehydrogenase I chain M [Pseudomonas aeruginosa PAO1] gi|126167560|gb|EAZ53071.1| NADH dehydrogenase I chain M [Pseudomonas aeruginosa C3719] gi|218771416|emb|CAW27183.1| NADH dehydrogenase I chain M [Pseudomonas aeruginosa LESB58] Length = 509 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 196/493 (39%), Positives = 298/493 (60%), Gaps = 26/493 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G F+ + + + +AL T+ I SL++W+ D Sbjct: 1 MILPWLILI---PFIGGFLCWIAEH--SSKTLPRWIALLSMTLVLILSLWIWATGDFQLA 55 Query: 57 ---KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G + + WI+ S HL +DG+S+L+V LT L +L SW IQ Sbjct: 56 PAPGGEPEWTLQFKVLWIERLGISIHLAMDGLSLLMVALTGLLGVLSVLCSWNEIQRRIG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + L + VIG FL++D+ LF+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHSSDDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAI 221 FF++T + ML AI+ + + ++ + D + K S +++ + + FF +FA+ Sbjct: 176 FFIFTQASGLVMLVAILGLVFVNFNATGVITFDYATLLKTQLSPHVEWLLMLGFFVAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H+WLP+AH QAPTAGSV LAGI+LK YG IRF LPLFP AS FAP+ +L Sbjct: 236 KMPVVPVHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLIRFALPLFPNASAEFAPIAMWL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +I I Y +L+S QTDIK+L+AYSS++HMG+V IGI+SG + ++G + QM++HGL ++ Sbjct: 296 GIIGIFYGALLSFAQTDIKRLVAYSSVSHMGFVMIGIYSGSQVALQGVVVQMIAHGLSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL MP + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILCGQLYERLHTRDMRKMGGLWSRMPYLPAISLFFASASLGLPGTGNFVGEFLILIG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F+ + V+A+FG+V +++YSL + + FG S+ + + + L RE MV +AVL Sbjct: 416 AFKVVPVIIVIATFGLVFASVYSLIMIHRAYFGPSQSD--EPILGLDARELSMVLGLAVL 473 Query: 462 TVFFGIYPVPIRD 474 V G+YP P+ D Sbjct: 474 LVLLGVYPQPVLD 486 >gi|238753743|ref|ZP_04615104.1| NADH-quinone oxidoreductase subunit M [Yersinia ruckeri ATCC 29473] gi|238707979|gb|EEQ00336.1| NADH-quinone oxidoreductase subunit M [Yersinia ruckeri ATCC 29473] Length = 507 Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 177/433 (40%), Positives = 274/433 (63%), Gaps = 13/433 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S+HL +DG+S+L+VVLT L IL SW+ IQ N + + L + VIG Sbjct: 71 WIPRFGISFHLALDGLSLLMVVLTGLLGVLAILCSWREIQRNQGFFYLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIAAATKFFIYTQASGLIMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ + + + K P S ++Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHYKATGVWTFNYENLLKTPMSHNVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHEFAPIAMWLGVIGIFYGAWMAFCQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ FQ + V+A+FG+V Sbjct: 371 MRQMGGLWGRIKYLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVIATFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G +K E + L +S RE ++ + VL V G+YP PI DT Sbjct: 431 FASVYSLIMMQRAYYGAAKSE--EALPGMSARELSIILLLVVLLVLLGVYPQPILDTSHA 488 Query: 479 PLSSIIENYTLKT 491 +S++ + ++ + Sbjct: 489 AMSNVQQWFSASS 501 >gi|261820803|ref|YP_003258909.1| NADH dehydrogenase subunit M [Pectobacterium wasabiae WPP163] gi|261604816|gb|ACX87302.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pectobacterium wasabiae WPP163] Length = 511 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 196/508 (38%), Positives = 298/508 (58%), Gaps = 36/508 (7%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG------VALGISTINFIFSLFVWS- 53 M LP+L LPF+G + C + FG +AL + SL +W Sbjct: 1 MLLPWL---ILLPFIGGLL--------CWQLERFGTKVPRWIALIAMGLTLALSLQLWLQ 49 Query: 54 -----VFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 V KG +Q+ + WI F HL +DG+S+L+VVLT L IL SW I Sbjct: 50 GGYSLVAPKGAPDWQVEYFVPWIPRFGIGIHLALDGLSLLMVVLTGLLGVLAILCSWNEI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 Q + + L + VIG FL++D+ LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 QRYQGFFHLNLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHKGSDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + D + K P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLIMLIAILALVFVHHNATGVWTFDYEDLLKTPMSYGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHAFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I+SG + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWLAFKQTDIKRLIAYTSVSHMGFVMIAIYSGNQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+R+HTRD+ GGL + + + F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERMHTRDMREMGGLWSRLKFLPALSLFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 ++ +Q + V+++FG+V +++YSL + ++ +G K + + LK +S+RE +V Sbjct: 410 ILFGSYQVVPVITVISTFGLVFASVYSLIMIQRAYYGTPKSD--EPLKGMSIRELSIVLL 467 Query: 458 IAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G+YP PI DT +S+I + Sbjct: 468 LVVLLVLLGVYPQPILDTSGAAMSNIQQ 495 >gi|156933133|ref|YP_001437049.1| NADH dehydrogenase subunit M [Cronobacter sakazakii ATCC BAA-894] gi|156531387|gb|ABU76213.1| hypothetical protein ESA_00943 [Cronobacter sakazakii ATCC BAA-894] Length = 509 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 195/512 (38%), Positives = 298/512 (58%), Gaps = 35/512 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q E+ W D F + HL +DG+S+L+VVLT L +L SW I Sbjct: 50 GGYSLTQSGEFPKWQDQFILDWIPRFGITIHLAIDGLSLLMVVLTGLLGVLAVLCSWNEI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS---IIDLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + K P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYNATGEWTFNYERLLKTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL + + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRQMGGLWSKIRWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV-QQLKDLSLRERCMVY 456 ++ FQ + V+++FG+V +++YSL + + FG K E Q+++ LS RE M+ Sbjct: 410 ILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGQPKSEAARQEIRGLSPRELFMIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 + VL V G YP PI DT +S+I + +T Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQWFT 501 >gi|260598694|ref|YP_003211265.1| NADH:ubiquinone oxidoreductase subunit M [Cronobacter turicensis z3032] gi|260217871|emb|CBA32412.1| NADH-quinone oxidoreductase subunit M [Cronobacter turicensis z3032] Length = 509 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 194/512 (37%), Positives = 298/512 (58%), Gaps = 35/512 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q E+ W D + + HL +DG+S+L+VVLT L +L SW I Sbjct: 50 GGYSLTQSGEFPKWQDQYILDWIPRFGITIHLAIDGLSLLMVVLTGLLGVLAVLCSWNEI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS---IIDLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + K P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYNATGEWTFNYERLLKTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL + + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRQMGGLWSKIRWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV-QQLKDLSLRERCMVY 456 ++ FQ + V+++FG+V +++YSL + + FG K E Q+++ LS RE M+ Sbjct: 410 ILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGQPKSEAASQEIRGLSPRELFMIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 + VL V G YP PI DT +S+I + +T Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQWFT 501 >gi|32267090|ref|NP_861122.1| NADH dehydrogenase subunit M [Helicobacter hepaticus ATCC 51449] gi|32263142|gb|AAP78188.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449] Length = 525 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 195/497 (39%), Positives = 291/497 (58%), Gaps = 18/497 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L+IV F P +L G R F +A S + +F + +WS F+ Q Sbjct: 5 LNIVIFFPAFAA--LLLYVLKGENSRIFAIIA---SALELLFIILLWSEFNVNYGGIQFF 59 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 Y I Y SY++GVDGIS+ L+ L +T L +K I+ + +I+ L LES+ Sbjct: 60 TRYELIASYGISYYVGVDGISLFLLALNALIT-LLALYFFKYIKTSL---VISVLFLESI 115 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V+G F +LD++LFYIF+E SL+P+ I+GVWGG +IYA+ K+FLYTF S+ ML I+ Sbjct: 116 VMGVFSALDVILFYIFWELSLLPVLYILGVWGGENKIYASIKYFLYTFGASLIMLVGILY 175 Query: 185 MCWEKK------TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + S+ID Y +S IQ W+++AFF A+KIP+FP H+W P A+ Q Sbjct: 176 YAYQYSLIMGVWSFSLIDWYQLS-LDTDIQKWLFVAFFIGTAVKIPLFPLHSWQPYAYTQ 234 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP GS L+G++ KMG Y +RF+LPLFP S + I L + +IY ++++ Q D Sbjct: 235 APIIGSALLSGVLSKMGTYALLRFVLPLFPDTSNNISIFISILCIFMVIYGAMLAYAQKD 294 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK L+AY SI+HMG + +GIFS G+ GA+F M+SHG+V +ALF +GV Y+R+ TR Sbjct: 295 IKTLLAYGSISHMGIIVLGIFSLNTEGLSGAVFFMVSHGVVVAALFLLIGVFYERVQTRQ 354 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I GL H+MP+++ + + M ++GLP T GF+GE L + FQ + +A LA Sbjct: 355 IEQVQGLAHSMPQFSTIFGIVMMCSLGLPLTMGFVGEVLCLYGFFQVNPIMAFLAGSSFF 414 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 + A+Y L ++KV FG + K LKDL+ RE+ + P+ +L V+ G+YP P+ + S Sbjct: 415 VGAIYMLVCFKKVFFG-AALPKFINLKDLNSREKVVFIPVVILIVWLGVYPKPLLNPIST 473 Query: 479 PLSSIIENYTLKTGYSD 495 + + LK S Sbjct: 474 SAEMLSQTIGLKISESS 490 >gi|50121940|ref|YP_051107.1| NADH dehydrogenase subunit M [Pectobacterium atrosepticum SCRI1043] gi|49612466|emb|CAG75916.1| NADH-quinone oxidoreductase chain M [Pectobacterium atrosepticum SCRI1043] Length = 511 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 181/439 (41%), Positives = 274/439 (62%), Gaps = 13/439 (2%) Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 G +Q Y WI F HL +DG+S+L+VVLT+ L IL SW IQ + + Sbjct: 59 GVPQWQSEFYVPWIPRFGIGIHLALDGLSLLMVVLTSLLGVLAILCSWNEIQRYQGFFHL 118 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYT 171 L + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT Sbjct: 119 NLLWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKGSDGKTRITAATKFFIYT 178 Query: 172 FFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMF 226 + ML AI+ + + ++ + + + K P S ++Y + + FF +FA+K+P+ Sbjct: 179 QSSGLIMLIAILALVFVHHNATGVWTFNYEDLLKTPMSYGVEYLLMLGFFIAFAVKMPVV 238 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Sbjct: 239 PLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHAFAPIAMWLGVIGI 298 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 Y + ++ QTDIK+LIAY+S++HMG+V I I+SG + +GA+ QM++HGL ++ LF Sbjct: 299 FYGAWLAFKQTDIKRLIAYTSVSHMGFVMIAIYSGNQLAYQGAVIQMIAHGLSAAGLFIL 358 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 G +Y+RLHTRD+ GGL + + + F +A +G+PGT F+GEF+++ +Q Sbjct: 359 CGQLYERLHTRDMREMGGLWSRLKFLPALSLFFAVATLGMPGTGNFVGEFMILFGSYQVV 418 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 + V+++FG+V +++YSL + ++ +G K + + LK +S+RE +V + VL V G Sbjct: 419 PVITVISTFGLVFASVYSLIMIQRAYYGTPKSD--EPLKSMSIRELSIVLLLVVLLVLLG 476 Query: 467 IYPVPIRDTFSVPLSSIIE 485 +YP PI DT S +S+I + Sbjct: 477 VYPQPILDTSSAAMSNIQQ 495 >gi|269139719|ref|YP_003296420.1| NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Edwardsiella tarda EIB202] gi|267985380|gb|ACY85209.1| NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Edwardsiella tarda EIB202] gi|304559586|gb|ADM42250.1| NADH-ubiquinone oxidoreductase chain M [Edwardsiella tarda FL6-60] Length = 507 Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 178/418 (42%), Positives = 263/418 (62%), Gaps = 12/418 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 S+HL +DG+S+L+VVLT L IL SW I + + + L + + VIG FL++DM Sbjct: 78 SFHLALDGLSLLMVVLTALLGVLAILCSWNEIHKYQGFFHLNLLWILAGVIGVFLAIDMF 137 Query: 136 LFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI + W Sbjct: 138 LFFFFWEMMLVPMYFLIALWGHKGSDGKTRITAATKFFIYTQASGLVMLIAIFGLVWVHY 197 Query: 191 TSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 ++ + D + P S +QY + + FF +FA+K+P+ P H WLP+AH QAPTAGSV Sbjct: 198 NATGVLSFDYEVLLNTPMSHTVQYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSV 257 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LAGI+LK YG +RF LPLFP AS FAP+ L +I I Y + ++ +QTDIK+LIAY Sbjct: 258 DLAGILLKTAAYGLLRFSLPLFPQASHEFAPIAMALGVIGIFYGAWMAYIQTDIKRLIAY 317 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 +S++HMG+V I I+SG + +GA+ QM++HGL ++ LF G +Y+RLHTRD+ GGL Sbjct: 318 TSVSHMGFVMIAIYSGSQLAFQGAVVQMIAHGLSAAGLFIITGQLYERLHTRDLREMGGL 377 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 + + + F +A +G+PGT F+GEF+++ FQ V+ASFG+V +++YSL Sbjct: 378 WGRLKYLPALSLFFAVATLGMPGTGNFVGEFMMMFGSFQVVPVTTVVASFGLVFASVYSL 437 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 + ++ +G K + Q L LS+RE ++ + VL V GI+P P+ DT S + +I Sbjct: 438 VMMQRAYYGAPKSD--QPLASLSVRELSLILLLVVLLVLLGIFPQPVLDTSSAAMGNI 493 >gi|238763937|ref|ZP_04624894.1| NADH-quinone oxidoreductase subunit M [Yersinia kristensenii ATCC 33638] gi|238697905|gb|EEP90665.1| NADH-quinone oxidoreductase subunit M [Yersinia kristensenii ATCC 33638] Length = 508 Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 177/427 (41%), Positives = 271/427 (63%), Gaps = 13/427 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S+HL +DG+S+L+VVLT L IL SW+ IQ N + + L + VIG Sbjct: 71 WIPRFGISFHLALDGLSLLMVVLTGLLGVLAILCSWREIQRNQGFFYLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIAAATKFFIYTQASGLIMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I + + K P S +++ + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHYNATGIWTFNYEDLLKTPMSHNVEWLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP ASQ FAP+ +L +I I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPLFPTASQEFAPIAMWLGVIGIFYGAWMAFCQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ FQ + V+++FG+V Sbjct: 371 MRQMGGLWGRIKYLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G K E + L +S RE ++ + VL V G+YP PI DT Sbjct: 431 FASVYSLIMMQRAYYGAPKSE--EPLPGMSARELSIILLLVVLLVLLGVYPQPILDTSHA 488 Query: 479 PLSSIIE 485 +S++ + Sbjct: 489 AMSNVQQ 495 >gi|224437347|ref|ZP_03658319.1| NADH dehydrogenase subunit M [Helicobacter cinaedi CCUG 18818] gi|313143810|ref|ZP_07806003.1| donor-ubiquinone reductase I [Helicobacter cinaedi CCUG 18818] gi|313128841|gb|EFR46458.1| donor-ubiquinone reductase I [Helicobacter cinaedi CCUG 18818] Length = 528 Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 188/485 (38%), Positives = 288/485 (59%), Gaps = 18/485 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L+IV F P F L L F + +GI + +F + +W+ F+ Q+ Sbjct: 5 LNIVIFFP---AFAALLLYVLKGENSRIFAILVGI--LELLFVVLLWNEFNVNYGGIQLS 59 Query: 66 EYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 +Y I Y SY +G+DGIS+ L+ L F+T L +K ++ +IA L LES+ Sbjct: 60 THYELISSYNISYFVGIDGISLFLLTLNAFIT-LLTLYFFKYLRTPL---IIAILFLESI 115 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V+G F +LD+++FYIF+E SL+P+ IIGVWGG RIYA+ K+FLYTF S+ ML I+ Sbjct: 116 VMGVFSALDVMMFYIFWELSLLPVLYIIGVWGGERRIYASIKYFLYTFGASLIMLVGILY 175 Query: 185 MCWE------KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + ++ID Y +S Q W+++AFF A+KIP+FP H+W P+A+ Q Sbjct: 176 FAYQYFLIMGAWSFNLIDWYQIS-LDIDTQKWLFVAFFIGMAVKIPIFPLHSWQPHAYTQ 234 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP GSV L+ ++ KMG YG +R +LPLFP S + I + + ++Y + +++ QT+ Sbjct: 235 APLVGSVLLSAVLSKMGTYGLLRLVLPLFPFTSSNISLFIGLVCVFMVVYGAFIALAQTN 294 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K +AYSS++HMG + +GIFS G+ GA+F M++HG+V ALF VGV+ R T+D Sbjct: 295 LKTFLAYSSLSHMGIIVLGIFSLNTEGLSGAVFFMVAHGVVVGALFMLVGVLQTRTQTQD 354 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GL H+MP+Y+ V + M ++ LP T GF+GE L + FQ + +A LA Sbjct: 355 LQDVQGLAHSMPKYSSVFGIVMMCSLALPLTMGFVGEVLSLYGFFQVNPIIAFLAGSSFF 414 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 + A+Y L ++RKV FG S K LKDL+LRE+ + PI V+ ++ G+YP P+ S Sbjct: 415 VGAIYMLTMFRKVFFG-SALPKYTTLKDLNLREKIVFIPILVIIIWLGVYPKPLLTPIST 473 Query: 479 PLSSI 483 ++ Sbjct: 474 SAETL 478 >gi|220916475|ref|YP_002491779.1| proton-translocating NADH-quinone oxidoreductase, chain M [Anaeromyxobacter dehalogenans 2CP-1] gi|219954329|gb|ACL64713.1| proton-translocating NADH-quinone oxidoreductase, chain M [Anaeromyxobacter dehalogenans 2CP-1] Length = 549 Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 187/502 (37%), Positives = 288/502 (57%), Gaps = 53/502 (10%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 +AL S ++F ++ W ++D + Q+++++ WI F +++GVDGISI +V+L+ Sbjct: 46 IALVTSALSFAAAIAAWRMYDPSATGVQLVQHFTWIRAFNIEFYVGVDGISISMVLLSGL 105 Query: 95 LTPFCILSS--WKSIQENFR------------------------EYMIAFLVLESMVIGA 128 ++ ++S W S +++ YM L+L++ ++G Sbjct: 106 ISFIATIASMPWWSGKKDAEMAGMVDHGHDDPHHPKHFSVRMVPGYMAMLLLLQTGMMGT 165 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 F++LDM LFY+F+E L+PM+ +IG+WGG + YAA KFFLYT GS+ ML AI+ + + Sbjct: 166 FVALDMFLFYVFWEVMLLPMYFLIGIWGGPRKEYAAIKFFLYTLAGSVLMLLAIIGIYYN 225 Query: 189 KKTSSIID----------LYAMSK-------------FPFSIQYWMWIAFFCSFAIKIPM 225 + + D L ++K FS ++I F FAIKIPM Sbjct: 226 SAPAQLADGSWSSGHTFNLIELAKQGAAGQFRNAAPILGFSFAKIVFIGLFIGFAIKIPM 285 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 FPFHTWLP+AHV+APT SV LAG++LKMG YG +RF + P A+ + A I +I Sbjct: 286 FPFHTWLPDAHVEAPTPISVILAGVLLKMGIYGILRFNYGILPDATAWAAGGIAVFGVIN 345 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 IIYA+ V + Q D+KKLIAYSS++HMG+ +G+ + G+ GA+ + +HG++S LF Sbjct: 346 IIYAAFVCLAQKDLKKLIAYSSVSHMGFSLLGMAAMTPQGISGAVLNLFTHGIISPMLFL 405 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 VGVIYDR H R+I +GGL +P Y+ +M + A++GLPG +GFI EF V F Sbjct: 406 IVGVIYDRAHHREIEKFGGLAQELPEYSAIMGLAFFASLGLPGLAGFISEFTVFSGAFPV 465 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV-QQLKDLSLRERCMVYPIAVLTVF 464 T ++++ VVL+A Y LW ++ G K V + DL+ RER +YP+AV+ ++ Sbjct: 466 FTTYTIISATSVVLTAAYYLWAIHRMFLG--KLNPVYKGYPDLNWRERMSLYPLAVICIY 523 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G YP I + L ++I+N Sbjct: 524 LGFYPQAILGVINPALHALIQN 545 >gi|296388891|ref|ZP_06878366.1| NADH dehydrogenase subunit M [Pseudomonas aeruginosa PAb1] Length = 509 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 195/493 (39%), Positives = 297/493 (60%), Gaps = 26/493 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G F+ + + + +AL T+ I SL++W+ D Sbjct: 1 MILPWLILI---PFIGGFLCWIAEH--SSKTLPRWIALLSMTLVLILSLWIWATGDFQLA 55 Query: 57 ---KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G + + WI+ S HL +DG+S+L+V LT L +L SW IQ Sbjct: 56 PAPGGEPEWTLQFKVLWIERLGISVHLAMDGLSLLMVALTGLLGVLSVLCSWNEIQRRIG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + L + VIG FL++D+ LF+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHSSDDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAI 221 FF++T + ML AI+ + + ++ + D + K S +++ + + FF +FA+ Sbjct: 176 FFIFTQASGLVMLVAILGLVFVNFNATGVITFDYATLLKTQLSPHVEWLLMLGFFVAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H+WLP+AH QAPTAGS LAGI+LK YG IRF LPLFP AS FAP+ +L Sbjct: 236 KMPVVPVHSWLPDAHAQAPTAGSADLAGILLKTAAYGLIRFALPLFPNASAEFAPIAMWL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +I I Y +L+S QTDIK+L+AYSS++HMG+V IGI+SG + ++G + QM++HGL ++ Sbjct: 296 GIIGIFYGALLSFAQTDIKRLVAYSSVSHMGFVMIGIYSGSQVALQGVVVQMIAHGLSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL MP + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILCGQLYERLHTRDMRKMGGLWSRMPYLPAISLFFASASLGLPGTGNFVGEFLILIG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F+ + V+A+FG+V +++YSL + + FG S+ + + + L RE MV +AVL Sbjct: 416 AFKVVPVIIVIATFGLVFASVYSLIMIHRAYFGPSQSD--EPILGLDARELSMVLGLAVL 473 Query: 462 TVFFGIYPVPIRD 474 V G+YP P+ D Sbjct: 474 LVLLGVYPQPVLD 486 >gi|88607159|ref|YP_505041.1| NADH dehydrogenase I, M subunit [Anaplasma phagocytophilum HZ] gi|88598222|gb|ABD43692.1| NADH dehydrogenase I, M subunit [Anaplasma phagocytophilum HZ] Length = 491 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 190/417 (45%), Positives = 262/417 (62%), Gaps = 12/417 (2%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKS-----IQENFREYMIAF 118 ++ Y WI VD +S+L+V+L+TFL C L S +E+ + Sbjct: 56 VLRDYTWIGEV----FAVDRLSLLMVILSTFLFFLCALCGVFSRACGVDKESESSFFALL 111 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+LE+ V+G F L+FY+FFEASLIPMF IIG WG +RI AA++F +YT S+ Sbjct: 112 LLLEATVLGVFSVHTSLMFYVFFEASLIPMFFIIGKWGHGDRISAAFRFLIYTGAASLLF 171 Query: 179 LFAIV---VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L +V V S D+ P I+ +WIA F +FA+K+PM P HTWLP A Sbjct: 172 LIGLVYSRVFSLGMFESFYADVSVALALPIGIRIALWIACFFAFAVKLPMVPCHTWLPKA 231 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HVQAPT GSV LAG+++KMGGYG IRF L P S + + +LS I+++Y+SLV+ Sbjct: 232 HVQAPTLGSVLLAGLLIKMGGYGFIRFCLSALPEISWKLSEFVVYLSAISLVYSSLVAFA 291 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K L+AYSS+AHM +V GIFS +SG+ GA+FQMLSHGL+S+ALF CVG+IY R Sbjct: 292 QKNMKTLVAYSSVAHMSFVAAGIFSLNESGIVGAIFQMLSHGLISAALFLCVGMIYSRTG 351 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 T D+ GG+ +MP+ + +M+ F+MA+ GLPGTSGFIGEFL I+ +FQ AV + Sbjct: 352 TMDMSKCGGIAASMPKLSFMMIFFSMASAGLPGTSGFIGEFLSILGIFQAFRFTAVCFAV 411 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 GVVLSA Y+L L R+V++G S D++ E ++ +A L +FFGIYP + Sbjct: 412 GVVLSAAYTLRLCREVIWGSSPEGAKVIDSDINAVEFVILGILAALVLFFGIYPASV 468 >gi|294637168|ref|ZP_06715476.1| NADH dehydrogenase I, M subunit [Edwardsiella tarda ATCC 23685] gi|291089632|gb|EFE22193.1| NADH dehydrogenase I, M subunit [Edwardsiella tarda ATCC 23685] Length = 507 Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 178/418 (42%), Positives = 262/418 (62%), Gaps = 12/418 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 S+HL +DG+S+L+VVLT L IL SW + + + L + + VIG FL++DM Sbjct: 78 SFHLALDGLSLLMVVLTALLGVLAILCSWNEVHRYQGFFHLNLLWILAGVIGVFLAIDMF 137 Query: 136 LFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI + W Sbjct: 138 LFFFFWEMMLVPMYFLIALWGHKGSDGKTRISAATKFFIYTQASGLVMLIAIFGLVWVHY 197 Query: 191 TSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 ++ + D + P S +QY + + FF +FA+K+P+ P H WLP+AH QAPTAGSV Sbjct: 198 NATGVLSFDYEVLLNTPMSHTVQYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSV 257 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LAGI+LK YG +RF LPLFP AS FAP+ L +I I Y + ++ VQTDIK+LIAY Sbjct: 258 DLAGILLKTAAYGLLRFSLPLFPQASHEFAPIAMALGVIGIFYGAWMAYVQTDIKRLIAY 317 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 +S++HMG+V I I+SG + +GA+ QM++HGL ++ LF G +Y+RLHTRD+ GGL Sbjct: 318 TSVSHMGFVMIAIYSGSQLAFQGAVVQMIAHGLSAAGLFIITGQLYERLHTRDLREMGGL 377 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 + + + F +A +G+PGT F+GEF+++ FQ V+ASFG+V +++YSL Sbjct: 378 WGRLKYLPALSLFFAVATLGMPGTGNFVGEFMMMFGSFQVVPVTTVVASFGLVFASVYSL 437 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 + ++ +G K + Q L LS+RE ++ + VL V GI+P P+ DT S + +I Sbjct: 438 VMMQRAYYGAPKSD--QPLASLSVRELSLILLLVVLLVLLGIFPQPVLDTSSAAMGNI 493 >gi|197121679|ref|YP_002133630.1| proton-translocating NADH-quinone oxidoreductase, chain M [Anaeromyxobacter sp. K] gi|196171528|gb|ACG72501.1| proton-translocating NADH-quinone oxidoreductase, chain M [Anaeromyxobacter sp. K] Length = 549 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 188/504 (37%), Positives = 290/504 (57%), Gaps = 57/504 (11%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 +AL S ++F ++ W ++D + Q+++++ WI F +++GVDGISI +V+L+ Sbjct: 46 IALVTSALSFAAAIAAWRMYDPSATGVQLVQHFTWIRAFNIEFYVGVDGISISMVLLSGL 105 Query: 95 LTPFCILSS--WKSIQENFR------------------------EYMIAFLVLESMVIGA 128 ++ ++S W S +++ YM L+L++ ++G Sbjct: 106 ISFIATIASMPWWSGKKDAEMAGMVDHGHDDPHHPKHFSVRMVPGYMAMLLLLQTGMMGT 165 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 F++LDM LFY+F+E L+PM+ +IG+WGG + YAA KFFLYT GS+ ML AI+ + + Sbjct: 166 FVALDMFLFYVFWEVMLLPMYFLIGIWGGPRKEYAAIKFFLYTLAGSVLMLLAIIGIYYN 225 Query: 189 KKTSSIID----------LYAMSK---------------FPFSIQYWMWIAFFCSFAIKI 223 + + D L ++K FPF+ ++I F FAIKI Sbjct: 226 SAPAQLADGSWSSGHTFNLIELAKQGAAGQFRNAAPILGFPFAKI--VFIGLFIGFAIKI 283 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 PMFPFHTWLP+AHV+APT SV LAG++LKMG YG +RF + P A+ + A I + Sbjct: 284 PMFPFHTWLPDAHVEAPTPISVILAGVLLKMGIYGILRFNYGILPDATAWAAGGIAVFGV 343 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 I IIYA+ V + Q D+KKLIAYSS++HMG+ +G+ + G+ GA+ + +HG++S L Sbjct: 344 INIIYAAFVCLAQKDLKKLIAYSSVSHMGFSLLGMAAMTPQGISGAVLNLFTHGIISPML 403 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 F VGVIYDR H R+I +GGL +P Y+ +M + A++GLPG +GFI EF V F Sbjct: 404 FLIVGVIYDRAHHREIEKFGGLAQELPEYSAIMGLAFFASLGLPGLAGFISEFTVFSGAF 463 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV-QQLKDLSLRERCMVYPIAVLT 462 T ++++ VVL+A Y LW ++ G K V + DL+ RER +YP+AV+ Sbjct: 464 PVFTTYTIISATSVVLTAAYYLWAIHRMFLG--KLNPVYKGYPDLNWRERMSLYPLAVIC 521 Query: 463 VFFGIYPVPIRDTFSVPLSSIIEN 486 ++ G YP I + L ++I+N Sbjct: 522 IYLGFYPQAILGVINPALHALIQN 545 >gi|147669459|ref|YP_001214277.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dehalococcoides sp. BAV1] gi|146270407|gb|ABQ17399.1| NADH dehydrogenase subunit M [Dehalococcoides sp. BAV1] Length = 497 Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 190/500 (38%), Positives = 300/500 (60%), Gaps = 23/500 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M++P+L+++TFLP G IL + + R+ +L ++ + + S+ V++ FD+ S Sbjct: 1 MSIPYLTLITFLPAAGA--ILMALWPRLSGRAIKITSLLLTLVPLVLSIAVFAGFDRSSS 58 Query: 61 SFQMIEYYH---WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++++ WI +YHLGVDG+S+ ++LTT L +L SWK ++ +EY + Sbjct: 59 MAGVVQFEENLPWISLLNANYHLGVDGLSLPFLILTTLLGVLAVLISWK-VELRVKEYFV 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L++ + G F+SLD+LLF+IF+E LIPM+ +I +WG + Y+A K+ LYT FG Sbjct: 118 WLLILQTSITGVFVSLDLLLFFIFWELELIPMYFLISIWGAGRKEYSALKYVLYTLFGGA 177 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 F+L I+++ + + I L ++ F ++ + FF FAIK+P FPFHTWLP Sbjct: 178 FILAGILILFFATGSLDIASLASLDLNNFLRPALMVLTFFMFFIGFAIKLPAFPFHTWLP 237 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH APTA SV LAG +LKMGGY +R + +FP + +AP+I +++I +IY + ++ Sbjct: 238 DAHTDAPTAASVILAGTLLKMGGYAMLRLNVAMFPDVCRDWAPLILTIAVINVIYGAAIT 297 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTDIK+LIAYSS++HMG+V +GIF+ + + GA+ QM SHG+++ LF GV+ Sbjct: 298 LKQTDIKRLIAYSSVSHMGFVLLGIFTLGEISMNGAVLQMFSHGIITGLLFAITGVVMHN 357 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-----NT 408 H RDI GGL MPR A++ ++ + M +P TSGFI E V + FQ+S Sbjct: 358 THERDINKMGGLAKQMPRTAIIFILAGLGAMAVPATSGFIAEVSVFLGSFQSSVVLGGQV 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI- 467 ++ G+VL+A Y LW ++V G +K Q +KD E +V+ + L V FG+ Sbjct: 418 FTMICLLGLVLAAAYILWTVQRVFLG-PGLDKFQMVKDADKTE--IVFSVVFLLVMFGVG 474 Query: 468 -YPVPIRD---TFSVPLSSI 483 YP I D T PL+++ Sbjct: 475 LYPQIIVDVIQTGVAPLAAL 494 >gi|291618178|ref|YP_003520920.1| NuoM [Pantoea ananatis LMG 20103] gi|291153208|gb|ADD77792.1| NuoM [Pantoea ananatis LMG 20103] Length = 506 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 195/507 (38%), Positives = 298/507 (58%), Gaps = 28/507 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M LP+L F+PF G F+ + G + +AL + SL +W G S Sbjct: 1 MLLPWL---IFIPFFGGFICWLAERFGAKVPRW--IALITMGLTLALSLQLW--LQGGYS 53 Query: 61 SFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 Q W F ++HL +DG+S+L+VVLT L +L SW I++ Sbjct: 54 LTQAAGIPQWQSSFSVPWIPRFGINFHLALDGLSLLMVVLTGLLGLMAVLCSWNEIEKYQ 113 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYK 166 + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI AA K Sbjct: 114 GFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATK 173 Query: 167 FFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAI 221 FF+YT + ML AI+ + + ++ + + + K P S ++Y + + FF +FA+ Sbjct: 174 FFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEQLLKTPMSHTVEYLLMLGFFIAFAV 233 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L Sbjct: 234 KMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWL 293 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +I I Y + ++ QTDIK+LIAY+SI+HMG+V I I++G + ++GA+ QM++HGL ++ Sbjct: 294 GIIGIFYGAWMAFSQTDIKRLIAYTSISHMGFVLIAIYTGSQLAIQGAVIQMIAHGLSAA 353 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL + + + F +AN+G+PGT F+GEF+++ Sbjct: 354 ALFILCGQLYERLHTRDMRQMGGLWSRIKWIPGLSLFFAVANLGMPGTGNFVGEFMILTG 413 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 FQ + V+A+FG+V +++YSL + ++ +G +K + L +S RE + + VL Sbjct: 414 SFQVVPVIIVIATFGLVFASVYSLVMMQRAYYGEAKSKD--PLPGMSAREFLTIGVLVVL 471 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIENYT 488 V GIYP PI DT +S+I + +T Sbjct: 472 LVLLGIYPQPILDTSHAAMSNIQQWFT 498 >gi|93005414|ref|YP_579851.1| NADH dehydrogenase subunit M [Psychrobacter cryohalolentis K5] gi|92393092|gb|ABE74367.1| proton-translocating NADH-quinone oxidoreductase, chain M [Psychrobacter cryohalolentis K5] Length = 541 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 192/480 (40%), Positives = 278/480 (57%), Gaps = 36/480 (7%) Query: 42 TINFIFSLFVWSVFDKGRSSFQMIE-----------YYHWIDYF-CSYHLGVDGISILLV 89 T+ F+ S+ +W D S Q+I WI F S+HL +DG+S+++V Sbjct: 44 TLTFVLSIVLWQYGDFSGMSQQVIAPDAAVPWVAEFSVPWIPSFGISFHLALDGLSLMMV 103 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 LT L + SW IQ + + L VIG FL++DM LF+ F+E L+P++ Sbjct: 104 ALTGLLGVAAVACSWNEIQRRVGFFHLNLLWSLGGVIGVFLAIDMFLFFFFWEMMLVPIY 163 Query: 150 VIIGVWG----GSERIYAAYKFFLYTFFGSIFMLFAI---VVMCWEKK---TSSIIDLYA 199 +I +WG G + YAA KFF+YT + ML I V++ + +K + + DL Sbjct: 164 FLIAIWGHDVVGKTKEYAATKFFIYTQASGLIMLVGILILVIISYAQKGVVSFNYNDLLG 223 Query: 200 MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 S + +Y + + FF FA+K+P+ PFH WLP+AH QAPTAGSV LAG+++K YG Sbjct: 224 TSLGGW--EYPIMLCFFIGFAVKLPIIPFHGWLPDAHAQAPTAGSVDLAGVLIKTAAYGL 281 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 IRF+LPLFP ASQ FAP+ L I I Y + ++ +QTD+K+L+AY+SI+HMG+V + I+ Sbjct: 282 IRFVLPLFPAASQDFAPIAMTLGTIGIFYGAWLAFMQTDMKRLLAYTSISHMGFVVLAIY 341 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 +G ++G M QML+HGL S+ALF G +Y+RLHTRD+ GG+ YA ++M F Sbjct: 342 AGTLLSLQGLMIQMLAHGLSSAALFIMAGQLYERLHTRDLTLMGGMWGQFRYYAPILMFF 401 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 A +G+PGT FIGEFL++ F VLA+F +VL+ LYSL L K +FG++ E Sbjct: 402 CAALLGIPGTGNFIGEFLILFGAFAQYPVFVVLATFSLVLAGLYSLILIHKALFGINNIE 461 Query: 440 KV------------QQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 +V + LKDL RE ++ +A V+ G+YP P DT S + I Y Sbjct: 462 EVALKETKSHGLPTRPLKDLGKRELSLLLMLAAGLVWLGLYPQPFLDTSSHAMQWINNAY 521 >gi|123441687|ref|YP_001005671.1| NADH dehydrogenase subunit M [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088648|emb|CAL11446.1| NADH dehydrogenase I chain M [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 507 Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 177/427 (41%), Positives = 270/427 (63%), Gaps = 13/427 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S+HL +DG+S+L+VVLT L IL SW+ IQ N + + L + VIG Sbjct: 71 WIPRFGISFHLALDGLSLLMVVLTGLLGVLAILCSWREIQRNQGFFYLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIAAATKFFIYTQASGLIMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I + + K P S +++ + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHYNATGIWTFNYEDLLKTPMSHNVEWLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHEFAPIAMWLGVIGIFYGAWMAFCQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ FQ + V+A+FG+V Sbjct: 371 MRQMGGLWGRIKYLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVIATFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G K E+ L +S RE ++ + VL V G+YP PI DT Sbjct: 431 FASVYSLIMMQRAYYGAPKSEEA--LPGMSARELSIILLLVVLLVLLGVYPQPILDTSHA 488 Query: 479 PLSSIIE 485 +S++ + Sbjct: 489 AMSNVQQ 495 >gi|73748700|ref|YP_307939.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Dehalococcoides sp. CBDB1] gi|73660416|emb|CAI83023.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Dehalococcoides sp. CBDB1] Length = 497 Score = 325 bits (834), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 189/500 (37%), Positives = 300/500 (60%), Gaps = 23/500 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M++P+L+++TFLP G IL + + R+ +L ++ + + S+ V++ FD+ S Sbjct: 1 MSIPYLTLITFLPAAGA--ILMALWPRLSGRAIKITSLLLTLVPLVLSIAVFAGFDRSSS 58 Query: 61 SFQMIEYYH---WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++++ WI +YHLGVDG+S+ ++LTT L +L SWK ++ +EY + Sbjct: 59 MAGVVQFEENLPWISLLNANYHLGVDGLSLPFLILTTLLGVLAVLISWK-VELRVKEYFV 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L++ + G F+SLD+LLF+IF+E LIPM+ +I +WG + Y+A K+ LYT FG Sbjct: 118 WLLILQTSITGVFVSLDLLLFFIFWELELIPMYFLISIWGAGRKEYSALKYVLYTLFGGA 177 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 F+L I+++ + + I L ++ F ++ + FF FAIK+P FPFHTWLP Sbjct: 178 FILAGILILFFATGSLDIASLASLDLNNFLRPALMVLTFFMFFIGFAIKLPAFPFHTWLP 237 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH APTA SV LAG +LKMGGY +R + +FP + +AP+I +++I +IY + ++ Sbjct: 238 DAHTDAPTAASVILAGTLLKMGGYAMLRLNVAMFPDVCRDWAPLILTIAVINVIYGAAIT 297 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTDIK+LIAYSS++HMG+V +GIF+ + + GA+ QM SHG+++ LF GV+ Sbjct: 298 LKQTDIKRLIAYSSVSHMGFVLLGIFTLGEISMNGAVLQMFSHGIITGLLFAITGVVMHN 357 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-----NT 408 H RDI GGL MPR A++ ++ + M +P TSGFI E V + FQ+S Sbjct: 358 THERDINKMGGLAKQMPRTAIIFILAGLGAMAVPATSGFIAEVSVFLGSFQSSVVPSGQV 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI- 467 ++ G+VL+A Y LW ++V G +K Q +KD E +V+ + L + FG+ Sbjct: 418 FTMICLLGLVLAAAYILWTVQRVFLG-PGLDKFQMVKDADKTE--IVFSVVFLLIMFGVG 474 Query: 468 -YPVPIRD---TFSVPLSSI 483 YP I D T PL+++ Sbjct: 475 LYPQIIVDVIQTGVAPLAAL 494 >gi|109156479|ref|YP_654412.1| NADH dehydrogenase subunit 4 [Siderastrea radians] gi|108744168|gb|ABG02386.1| NADH dehydrogenase subunit 4 [Siderastrea radians] Length = 491 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 205/480 (42%), Positives = 294/480 (61%), Gaps = 16/480 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L +V FL F+G+ ++ S + +AL S I L +W FD FQ+I Sbjct: 8 LGLVFFLLFMGIINVMKVSREDSVKLK--RIALEWSLAILISVLVLWGAFDL-EGQFQII 64 Query: 66 EYYHWI-DYFCSYHLG-----VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 WI ++ G +DG S+ VLT L P CIL SWKSI+ F+E+++ L Sbjct: 65 NRIEWIISPTLNFQWGPGFFVLDGASLFFFVLTALLIPICILISWKSIKHLFKEFLLCLL 124 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFM 178 LE++++G FL LD+LLFYI FE LIPMF++IGVWG E++ A+Y FF YTF GS+FM Sbjct: 125 FLEALLVGVFLVLDLLLFYILFEGILIPMFLLIGVWGSREEKVRASYYFFFYTFAGSVFM 184 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L I + T+ L + K P + Q W+ FF S A+KIP PFH WLP AHV+ Sbjct: 185 LLGIFQLYSVTGTTDYQVLLNI-KLPVTTQKWVLAGFFLSLAVKIPQIPFHIWLPQAHVE 243 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP +GSV LAGI+LK+GGYG +RF PL P AS+YFAP+I L +IA+IY L++ Q D Sbjct: 244 APVSGSVILAGILLKLGGYGFLRFSWPLLPAASEYFAPLIVMLGVIAVIYGGLLTCRQVD 303 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 K+LIAYSS+AHMG V +G+F+ G+ A+F ML+HG VSSALF + +Y+R HTR Sbjct: 304 FKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFMMLAHGFVSSALFIAITYLYERHHTRL 363 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I Y G+ MP + +MM+ ++ NMG+P + F+GEF +++ + + + +LA+ G+V Sbjct: 364 IKYYRGISLTMPIFVCIMMILSLTNMGIPLSCNFVGEFFSLLAAVEYNFGLGILATSGMV 423 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV----PIRD 474 SA YSL+LY ++ FG + + ++DL+ E + P+ + FGI+P PI++ Sbjct: 424 WSAAYSLYLYNRISFGAAS-NYLLFIRDLNRSELLAISPLVIAIFLFGIFPFILIDPIKN 482 >gi|128737|sp|P03913|NU4M_ASPAM RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 Length = 488 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 193/452 (42%), Positives = 286/452 (63%), Gaps = 5/452 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL S IN + SL ++ +FD FQ IE ++ I YF Y LGVDG+SI ++LTT + Sbjct: 35 IALTTSIINLVVSLIMFILFDFSSKQFQFIEEHYQISYFDIY-LGVDGLSIYFILLTTII 93 Query: 96 TPFCILSSWKSIQ-ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 P IL +W SIQ +N +++ L+LE++++ FL LD+LLFYIFFE+ L P+F++IG+ Sbjct: 94 MPIAILCNWNSIQSKNVLSFVVIMLLLETLLLAVFLVLDVLLFYIFFESILPPLFLLIGL 153 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 +G S ++ A++ FLYT GS+FML +IV M T+ D + S F + Q +++ Sbjct: 154 FGSSNKVRASFYLFLYTLLGSLFMLLSIVAMSSIMGTTDF-DALSKSNFNYVTQLFLFYG 212 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 F +FA+K P+ +TWL AHV++P +GS+ LAGI+LK+ YG R +LPL P AS + Sbjct: 213 IFIAFAVKTPVSFLNTWLLKAHVESPLSGSIILAGIVLKLSLYGIFRLILPLLPKASLNY 272 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 +I+ + +I IIYAS ++ DIK+LIAYSS++H +IG FS G+EG++ L Sbjct: 273 TYIIYVIGVITIIYASFSTLRTIDIKELIAYSSVSHAAVYSIGAFSNTIQGIEGSIALGL 332 Query: 335 SHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +HG VSS LF C G++YDR TR I Y G+ MP ++V+ + ++ N G P T FI Sbjct: 333 AHGFVSSGLFICAGGILYDRSSTRLITYYRGMAQVMPIFSVLFFILSLGNSGTPLTLNFI 392 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS-KCEKVQQLKDLSLRER 452 GEF+ + VF+ + VLAS +V SA Y++++Y ++VFG S V+ + D++ RE Sbjct: 393 GEFMSLYGVFERMPLLGVLASTSIVFSAAYTIFMYNRIVFGGSYSIYFVENIGDVTRREF 452 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 M+ VLTV FGIYP PI D +SS+I Sbjct: 453 IMLLVFVVLTVLFGIYPAPILDGLHYSVSSLI 484 >gi|289432726|ref|YP_003462599.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dehalococcoides sp. GT] gi|288946446|gb|ADC74143.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dehalococcoides sp. GT] Length = 497 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 189/500 (37%), Positives = 300/500 (60%), Gaps = 23/500 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M++P+L+++TFLP G IL + + R+ +L ++ + + S+ V++ FD+ S Sbjct: 1 MSIPYLTLITFLPAAGA--ILMALWPRLSGRAIKITSLLLTLVPLVLSIAVFAGFDRSSS 58 Query: 61 SFQMIEYYH---WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++++ WI +YHLGVDG+S+ ++LTT L +L SWK ++ +EY + Sbjct: 59 MAGVVQFEENLPWISLLNTNYHLGVDGLSLPFLILTTLLGVLAVLISWK-VELRVKEYFV 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L++ + G F+SLD+LLF+IF+E LIPM+ +I +WG + Y+A K+ LYT FG Sbjct: 118 WLLILQTSITGVFVSLDLLLFFIFWELELIPMYFLISIWGAGRKEYSALKYVLYTLFGGA 177 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 F+L I+++ + + I L ++ F ++ + FF FAIK+P FPFHTWLP Sbjct: 178 FILAGILILFFATGSLDIASLASLDLNNFLRPALMVLTFFMFFIGFAIKLPAFPFHTWLP 237 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH APTA SV LAG +LKMGGY +R + +FP + +AP+I +++I +IY + ++ Sbjct: 238 DAHTDAPTAASVILAGTLLKMGGYAMLRLNVAMFPDVCRDWAPLILTIAVINVIYGAAIT 297 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTDIK+LIAYSS++HMG+V +GIF+ + + GA+ QM SHG+++ LF GV+ Sbjct: 298 LKQTDIKRLIAYSSVSHMGFVLLGIFTLGEISMNGAVLQMFSHGIITGLLFAITGVVMHN 357 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-----NT 408 H RDI GGL MPR A++ ++ + M +P TSGFI E V + FQ+S Sbjct: 358 THERDINKMGGLAKQMPRTAIIFILAGLGAMAVPATSGFIAEVSVFLGSFQSSVVPGGQV 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI- 467 ++ G+VL+A Y LW ++V G +K Q +KD E +V+ + L + FG+ Sbjct: 418 FTMICLLGLVLAAAYILWTVQRVFLG-PGLDKFQMVKDADKTE--IVFSVVFLLIMFGVG 474 Query: 468 -YPVPIRD---TFSVPLSSI 483 YP I D T PL+++ Sbjct: 475 LYPQIIVDVIQTGVAPLAAL 494 >gi|317050803|ref|YP_004111919.1| proton-translocating NADH-quinone oxidoreductase subunit M [Desulfurispirillum indicum S5] gi|316945887|gb|ADU65363.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfurispirillum indicum S5] Length = 502 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 183/483 (37%), Positives = 280/483 (57%), Gaps = 11/483 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSL---FVWSVFDK 57 +N ++ + +P +GV +I + F A T+ F+ SL F + Sbjct: 8 LNTLSITALMLIPLIGVLIIALQGKSENTKAPHFIAAATTFTV-FVLSLVMAFAYWPHAG 66 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 G + + + ++WI + SY + VDG+S+ +VVLTTFL C L+SW + + Y Sbjct: 67 GENQYLFRDTWNWIPFLNTSYDVAVDGLSMPMVVLTTFLLFICALASWNIGDKRPKLYFA 126 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL LE+ +IG F S+DMLLF+IF+E LIPM+ +IG+WGG+ R YA+ KF LYT S Sbjct: 127 LFLFLETALIGVFTSVDMLLFFIFWELELIPMYFLIGIWGGARREYASTKFILYTVLASA 186 Query: 177 FMLFAIV-----VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 M +++ V + ++ + + +Q ++ FF FA+K+P+ P HTW Sbjct: 187 GMFISLLAIYFFVGAYSFDYVTVSQSGILRELSMFVQVLLFAGFFLCFAVKLPVVPLHTW 246 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHV+APT SV LAG++LKMG YG RF LFP A+QY A + L +I I+Y ++ Sbjct: 247 LPDAHVEAPTPVSVLLAGVLLKMGAYGLFRFNFGLFPEATQYLATTLAVLGVINIVYGAM 306 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 +++ QTD+KK+IAYSS++HMG++ +G+ S G + QM +HG +++ +F VGV+Y Sbjct: 307 LALAQTDMKKVIAYSSVSHMGFILLGLASLNHMAFNGGILQMFAHGTITAMMFLMVGVVY 366 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR HTRDI GGL MP + + ++ + A +G+PG +GFI E L + FQ + + Sbjct: 367 DRTHTRDIAKLGGLAQQMPMASALFLITSFAAVGVPGFNGFIAEVLTYVGAFQAFPVLTI 426 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A GVVLSA Y LWL +V FG K L+D++ E+ ++ + + GI P Sbjct: 427 IACLGVVLSAAYMLWLQERVFFGPRKAVW-NGLRDMNGLEKFNMFACLFVVMLTGILPFL 485 Query: 472 IRD 474 I D Sbjct: 486 ILD 488 >gi|315501198|ref|YP_004080085.1| proton-translocating NADH-quinone oxidoreductase, chain m [Micromonospora sp. L5] gi|315407817|gb|ADU05934.1| proton-translocating NADH-quinone oxidoreductase, chain M [Micromonospora sp. L5] Length = 510 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 192/504 (38%), Positives = 296/504 (58%), Gaps = 19/504 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRS 60 N PFLS++T P +G V+ + L R VA G S + + S+ +W F G Sbjct: 3 NFPFLSVLTVAPLVGALVV---ALLPRSRPDLAKLVAFGWSLLVLVLSVVMWFAFSAGGD 59 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE---YMI 116 FQ E Y WI ++ ++ VDGI++++++L L P IL+SW + + R Y Sbjct: 60 RFQFRESYPWIPNWGVNFTFEVDGIALVMLMLIAILVPLVILASWHDAEASKRSVPAYFA 119 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LVLE +IG F + D+ LFY+FFE L+PM+ +IG +GG +R YAA KFFLY+ G + Sbjct: 120 LLLVLECTMIGVFAAADVFLFYVFFEVMLVPMYFLIGSYGGHQRQYAAVKFFLYSLVGGL 179 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ--YWMWIAFFCSFAIKIPMFPFHTWLPN 234 FML A V+ W + D A+S+ F+ W+++ FF +FAIK P FPFHTWLP+ Sbjct: 180 FML-AAVIGLWVVGGKTF-DWQALSQAEFATDTARWLFLGFFVAFAIKAPFFPFHTWLPD 237 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 A AP + L G++ K+G +G +R+ LPLFP AS++FAP L +I IIYA+L+++ Sbjct: 238 AGGAAPAGAAALLVGVLDKVGTFGILRYCLPLFPEASRWFAPWALALGVIGIIYAALLAV 297 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q D+K+L++Y+SIAH G++ +GIF+ GA+ ML+HGL + LF VG++ R Sbjct: 298 GQNDLKRLVSYTSIAHFGFIGVGIFAFTTQAGTGAVLYMLNHGLATGLLFLVVGMLIARR 357 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 + I +GG +P A V+ +A++ LPGT+ F+ EFLV++ F + VAV+A+ Sbjct: 358 GSALISDFGGAGKLVPVLAGVLFFAGLASLALPGTAPFVSEFLVLIGTFTVNKPVAVIAT 417 Query: 415 FGVVLSALYSLWLYRKVVFGV---SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 G++L+A Y LW+ ++ G + E +DL+LRE+ +V P+ L V G YP P Sbjct: 418 LGIILAAAYVLWMVQRTTQGTLNPALTEVEGMRRDLTLREKVVVAPLIALIVLLGFYPKP 477 Query: 472 IRDTFSVPLSSIIENYTLKTGYSD 495 + D + + + +++ G SD Sbjct: 478 VTDVINPAVQATMQD----VGKSD 497 >gi|262043317|ref|ZP_06016446.1| NADH dehydrogenase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039341|gb|EEW40483.1| NADH dehydrogenase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 509 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 193/509 (37%), Positives = 299/509 (58%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVWS- 53 M LP+L ++ PF+G F+ C + FGV AL + + L +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLVLGLQLWMQ 49 Query: 54 -----VFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G +Q WI F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + K P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALAFVHFNATGVWTFNYEELLKTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL + + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRQMGGLWSKIKWLPAMSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ ++ T+ V+++FG+V +++YSL + + FG +K E ++L +SLRE ++ Sbjct: 410 ILFGSYKVVPTITVISTFGLVFASVYSLSMLHRTYFGKAKSEVAAKELPGMSLRELSIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G +P PI DT +S+I + Sbjct: 470 LLVVLLVLLGFFPQPILDTSHAAMSNIQQ 498 >gi|152971205|ref|YP_001336314.1| NADH dehydrogenase subunit M [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330003567|ref|ZP_08304682.1| NDH-1 subunit M [Klebsiella sp. MS 92-3] gi|150956054|gb|ABR78084.1| NADH dehydrogenase subunit M [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328536907|gb|EGF63206.1| NDH-1 subunit M [Klebsiella sp. MS 92-3] Length = 509 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 193/509 (37%), Positives = 299/509 (58%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVWS- 53 M LP+L ++ PF+G F+ C + FGV AL + + L +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLVLGLQLWMQ 49 Query: 54 -----VFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G +Q WI F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + K P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALAFVHFNATGVWTFNYEDLLKTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL + + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRQMGGLWSKIKWLPAMSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ ++ T+ V+++FG+V +++YSL + + FG +K E ++L +SLRE ++ Sbjct: 410 ILFGSYKVVPTITVISTFGLVFASVYSLSMLHRAYFGKAKSEVAAKELPGMSLRELSIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G +P PI DT +S+I + Sbjct: 470 LLVVLLVLLGFFPQPILDTSHAAMSNIQQ 498 >gi|77459836|ref|YP_349343.1| NADH dehydrogenase subunit M [Pseudomonas fluorescens Pf0-1] gi|77383839|gb|ABA75352.1| NADH dehydrogenase subunit M [Pseudomonas fluorescens Pf0-1] Length = 510 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 196/504 (38%), Positives = 300/504 (59%), Gaps = 26/504 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + G + +AL T+ L++W+ D Sbjct: 1 MILPWLILI---PFIGGLLCWLGERFGATLPRW--IALLTMTLELALGLWLWAHGDYSFA 55 Query: 57 --KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G +E+ H WI F + HL +DG+S+L+++LT L +L SWK IQ + Sbjct: 56 PAPGADPTWALEFKHVWIQRFGINVHLALDGLSLLMILLTGLLGILSVLCSWKEIQRHVG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + + + V+G FL+LD+ +F+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLMWILGGVVGVFLALDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAI 221 FF++T + ML AI+ V+ T I YA +K + +Y + + FF +FA+ Sbjct: 176 FFIFTQASGLIMLVAILGLVLVNYNSTGVITFNYADLLKTKMSMTTEYILMLGFFIAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ PFH+WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L Sbjct: 236 KLPVVPFHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 LI I Y + ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++GA+ QML+HGL ++ Sbjct: 296 GLIGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQLALQGAVIQMLAHGLSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL + + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILSGQLYERLHTRDMREMGGLWSRIAYLPAISLFFAAASLGLPGTGNFVGEFLILIG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F ++ + +A+ G+V ++YSL + + FG SK + + L + RE MV +AVL Sbjct: 416 TFASAPWITAIATSGLVFGSVYSLIMIHRAYFGPSKSDSI--LHGMDGRELIMVLGLAVL 473 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIE 485 ++ G+YP P DT + + + + Sbjct: 474 LIYLGVYPQPFLDTSAATMHGVQQ 497 >gi|323187998|gb|EFZ73293.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Escherichia coli RN587/1] Length = 509 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 196/513 (38%), Positives = 299/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALVTMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|26248664|ref|NP_754704.1| NADH dehydrogenase subunit M [Escherichia coli CFT073] gi|91211569|ref|YP_541555.1| NADH dehydrogenase subunit M [Escherichia coli UTI89] gi|110642481|ref|YP_670211.1| NADH dehydrogenase subunit M [Escherichia coli 536] gi|117624466|ref|YP_853379.1| NADH dehydrogenase subunit M [Escherichia coli APEC O1] gi|191170247|ref|ZP_03031801.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli F11] gi|215487490|ref|YP_002329921.1| NADH dehydrogenase subunit M [Escherichia coli O127:H6 str. E2348/69] gi|218559190|ref|YP_002392103.1| NADH dehydrogenase subunit M [Escherichia coli S88] gi|227887333|ref|ZP_04005138.1| NADH dehydrogenase subunit M [Escherichia coli 83972] gi|237704751|ref|ZP_04535232.1| NADH dehydrogenase subunit M [Escherichia sp. 3_2_53FAA] gi|300981081|ref|ZP_07175353.1| NADH dehydrogenase subunit M [Escherichia coli MS 200-1] gi|300983372|ref|ZP_07176556.1| NADH dehydrogenase subunit M [Escherichia coli MS 45-1] gi|301049030|ref|ZP_07196015.1| NADH dehydrogenase subunit M [Escherichia coli MS 185-1] gi|306814612|ref|ZP_07448774.1| NADH dehydrogenase subunit M [Escherichia coli NC101] gi|312967575|ref|ZP_07781790.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Escherichia coli 2362-75] gi|331647932|ref|ZP_08349024.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli M605] gi|331658357|ref|ZP_08359319.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli TA206] gi|26109069|gb|AAN81272.1|AE016763_231 NADH dehydrogenase I chain M [Escherichia coli CFT073] gi|91073143|gb|ABE08024.1| NADH dehydrogenase I chain M [Escherichia coli UTI89] gi|110344073|gb|ABG70310.1| NADH dehydrogenase I chain M [Escherichia coli 536] gi|115513590|gb|ABJ01665.1| NADH dehydrogenase I chain M [Escherichia coli APEC O1] gi|190909763|gb|EDV69348.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli F11] gi|215265562|emb|CAS09965.1| NADH: ubiquinone oxidoreductase, membrane subunit M [Escherichia coli O127:H6 str. E2348/69] gi|218365959|emb|CAR03703.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli S88] gi|222034033|emb|CAP76774.1| NadH-quinone oxidoreductase subunit M [Escherichia coli LF82] gi|226901117|gb|EEH87376.1| NADH dehydrogenase subunit M [Escherichia sp. 3_2_53FAA] gi|227835683|gb|EEJ46149.1| NADH dehydrogenase subunit M [Escherichia coli 83972] gi|294492693|gb|ADE91449.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli IHE3034] gi|300299139|gb|EFJ55524.1| NADH dehydrogenase subunit M [Escherichia coli MS 185-1] gi|300307694|gb|EFJ62214.1| NADH dehydrogenase subunit M [Escherichia coli MS 200-1] gi|300408538|gb|EFJ92076.1| NADH dehydrogenase subunit M [Escherichia coli MS 45-1] gi|305852006|gb|EFM52458.1| NADH dehydrogenase subunit M [Escherichia coli NC101] gi|307554339|gb|ADN47114.1| NADH dehydrogenase I chain M [Escherichia coli ABU 83972] gi|307626187|gb|ADN70491.1| NADH dehydrogenase subunit M [Escherichia coli UM146] gi|312287772|gb|EFR15677.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Escherichia coli 2362-75] gi|312946895|gb|ADR27722.1| NADH dehydrogenase subunit M [Escherichia coli O83:H1 str. NRG 857C] gi|315285923|gb|EFU45361.1| NADH dehydrogenase subunit M [Escherichia coli MS 110-3] gi|315292250|gb|EFU51602.1| NADH dehydrogenase subunit M [Escherichia coli MS 153-1] gi|315298124|gb|EFU57393.1| NADH dehydrogenase subunit M [Escherichia coli MS 16-3] gi|320196144|gb|EFW70768.1| NADH-ubiquinone oxidoreductase chain M [Escherichia coli WV_060327] gi|323952070|gb|EGB47944.1| proton-translocating NADH-quinone oxidoreductase [Escherichia coli H252] gi|323956043|gb|EGB51796.1| proton-translocating NADH-quinone oxidoreductase [Escherichia coli H263] gi|324013183|gb|EGB82402.1| NADH dehydrogenase subunit M [Escherichia coli MS 60-1] gi|330912102|gb|EGH40612.1| NADH-ubiquinone oxidoreductase chain M [Escherichia coli AA86] gi|331043656|gb|EGI15794.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli M605] gi|331056605|gb|EGI28614.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli TA206] Length = 509 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 196/513 (38%), Positives = 299/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALVTMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSNGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|312200055|ref|YP_004020116.1| proton-translocating NADH-quinone oxidoreductase chain M [Frankia sp. EuI1c] gi|311231391|gb|ADP84246.1| proton-translocating NADH-quinone oxidoreductase, chain M [Frankia sp. EuI1c] Length = 519 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 183/507 (36%), Positives = 297/507 (58%), Gaps = 24/507 (4%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGRSS 61 P+L+I+ +P +G V+ S F + LG++ + + ++ + + Sbjct: 5 PWLTILLAIPLVGAVVVALIPK----TASTFAKQLTLGLTIVELVIAVIATAAYRPNVPG 60 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE---YMIA 117 FQ + Y WI F SY +G DGISI+L++L L P +L+SW +E R + Sbjct: 61 FQFTQRYDWIKQFGVSYSVGADGISIVLILLAAVLVPVVVLASWHECEEGKRSVPAFFAL 120 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG----SERIYAAYKFFLYTFF 173 L L++ ++G F + D+ LFY+FFEA LIPM+ +IG +G ++R YAA KF LY+ F Sbjct: 121 LLALQAGMVGVFAATDVFLFYVFFEAMLIPMYFLIGSYGAPKEQTQRAYAAVKFLLYSLF 180 Query: 174 GSIFMLFAIV---VMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPF 228 G + ML A++ V+ + D + K + Q W+++ FF +FAIK P+FPF Sbjct: 181 GGLLMLAAVIGLYVVSVHQLGHGTFDFATLRQMKIDPTTQKWLFLGFFLAFAIKAPLFPF 240 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 HTWLP+A Q+PT G+V L G++ K+G +G IR+ +PLFP A+ YFAP++ L++I I Y Sbjct: 241 HTWLPDAGAQSPTGGAVLLVGVLDKVGTFGLIRYCIPLFPDAADYFAPLVLALAVIGIFY 300 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 +L+++ Q D+K+L++Y+S+AH G++ +G F+ GA+ M++HGL + LF VG Sbjct: 301 GALLAIGQRDMKRLVSYTSLAHFGFIALGCFAFTSQAGVGAVLYMVNHGLSTGLLFLVVG 360 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 + R +RD+ AYGG+ P A V ++ ++++ LPG + F+ EFLV++ F Sbjct: 361 FLVARRGSRDVDAYGGMAKVTPVLAGVFLIGGLSSLALPGLNSFVSEFLVLVGTFTRYRA 420 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 +A++A+ G+VL+A+Y L LY++ + G E L DLS+RE+ +V PI L + G+Y Sbjct: 421 LAIVATCGIVLAAIYVLNLYKRTMTGPVTQEN-SLLTDLSVREKLVVAPIIALIIALGVY 479 Query: 469 PVPIRDTFSVPLSSIIENYTLKTGYSD 495 P P+ D S+ +T G+ D Sbjct: 480 PKPLIDIIR---PSVTATFT-DVGHHD 502 >gi|109156507|ref|YP_654321.1| NADH dehydrogenase subunit 4 [Agaricia humilis] gi|108744070|gb|ABG02295.1| NADH dehydrogenase subunit 4 [Agaricia humilis] Length = 492 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 200/446 (44%), Positives = 279/446 (62%), Gaps = 10/446 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI---DYFCSYHLGV---DGISILLV 89 VAL S I +L +W FD FQ+I WI + GV DG S+ Sbjct: 37 VALEWSLAVLISALVLWGAFDL-EGQFQIINRIEWIISPALNLQWGPGVFALDGASLFFF 95 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 VLT L P CIL SWKSI+ F+E+++ L LE++++G FL LD+LLFYI FE LIPMF Sbjct: 96 VLTALLIPICILISWKSIRHLFKEFLLCLLFLEALLVGVFLVLDLLLFYILFEGILIPMF 155 Query: 150 VIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ 208 ++IGVWG E++ A+Y FF YTF GS+FML I + T+ L + K P + Q Sbjct: 156 LLIGVWGSREEKVRASYYFFFYTFAGSVFMLLGIFQVYSITGTTDYQILLNI-KLPVTTQ 214 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 W+ FF S A+KIP PFH WLP AHV+AP +GSV LAGI+LK+GGYG +RF P+ P Sbjct: 215 KWVLAGFFLSLAVKIPQIPFHIWLPQAHVEAPVSGSVILAGILLKLGGYGFLRFSWPILP 274 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 AS+YFAP++ L ++AI+Y L++ Q D K+LIAYSS+AHMG V + +F+ G+ G Sbjct: 275 AASEYFAPLVVMLGVVAIVYGGLLTCRQVDFKRLIAYSSVAHMGLVPLSLFTHTIEGLVG 334 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 A+F ML+HG VSSALF + +Y+R HTR I Y G+ MP + +MMV ++ NMG+P Sbjct: 335 AVFMMLAHGFVSSALFIAITYLYERHHTRLIKYYRGVTLTMPLFVCIMMVLSLTNMGIPL 394 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 F+GEF +++ + + + VLA+ GVV SA YSL+LY ++ FG + + ++DL+ Sbjct: 395 NCNFVGEFFSLLAAVKYNFGLGVLATSGVVWSAAYSLYLYNRISFGAAS-NYLLFIRDLN 453 Query: 449 LRERCMVYPIAVLTVFFGIYPVPIRD 474 E ++ P+ + FGI+P I D Sbjct: 454 RCELWVLSPLVIAIFLFGIFPFIIID 479 >gi|238895794|ref|YP_002920530.1| NADH dehydrogenase subunit M [Klebsiella pneumoniae NTUH-K2044] gi|238548112|dbj|BAH64463.1| NADH dehydrogenase subunit M [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 509 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 193/509 (37%), Positives = 299/509 (58%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVWS- 53 M LP+L ++ PF+G F+ C + FGV AL + + L +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLVLGLQLWMQ 49 Query: 54 -----VFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G +Q WI F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + K P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALAFVHFNATGVWTFNYEDLLKTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL + + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRQMGGLWSKIKWLPAMSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ ++ T+ V+++FG+V +++YSL + + FG +K E ++L +SLRE ++ Sbjct: 410 ILFGSYKVVPTITVISTFGLVFASVYSLSMLHRAYFGKAKSEAAAKELPGMSLRELSIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G +P PI DT +S+I + Sbjct: 470 LLVVLLVLLGFFPQPILDTSHAAMSNIQQ 498 >gi|238759973|ref|ZP_04621126.1| NADH-quinone oxidoreductase subunit M [Yersinia aldovae ATCC 35236] gi|238701800|gb|EEP94364.1| NADH-quinone oxidoreductase subunit M [Yersinia aldovae ATCC 35236] Length = 508 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 176/427 (41%), Positives = 268/427 (62%), Gaps = 13/427 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F +HL +DG+S+L+VVLT L IL SW+ IQ N + + L + VIG Sbjct: 71 WIPRFGIEFHLALDGLSLLMVVLTGLLGVLAILCSWREIQRNQGFFYLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIAAATKFFIYTQASGLIMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I + + P S ++Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHYNATGIWTFNYEDLLNTPMSHNVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHEFAPIAMWLGVIGIFYGAWMAFCQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ FQ + V+A+FG+V Sbjct: 371 MRQMGGLWGRIKYLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVIATFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G K E + L +S RE ++ + VL V G+YP PI DT Sbjct: 431 FASVYSLIMMQRAYYGAPKSE--EPLPGMSARELSIILLLVVLLVLLGVYPQPILDTSHA 488 Query: 479 PLSSIIE 485 +S++ + Sbjct: 489 AMSNVQQ 495 >gi|218695876|ref|YP_002403543.1| NADH dehydrogenase subunit M [Escherichia coli 55989] gi|218352608|emb|CAU98389.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli 55989] Length = 509 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 196/513 (38%), Positives = 299/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWRKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|218690437|ref|YP_002398649.1| NADH dehydrogenase subunit M [Escherichia coli ED1a] gi|218428001|emb|CAR08922.2| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli ED1a] Length = 509 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 195/503 (38%), Positives = 295/503 (58%), Gaps = 43/503 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALVTMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSNGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDT 475 M+ + VL V G YP PI DT Sbjct: 466 FMILLLVVLLVLLGFYPQPILDT 488 >gi|170767369|ref|ZP_02901822.1| NADH-quinone oxidoreductase, M subunit [Escherichia albertii TW07627] gi|170123703|gb|EDS92634.1| NADH-quinone oxidoreductase, M subunit [Escherichia albertii TW07627] Length = 509 Score = 324 bits (830), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 196/513 (38%), Positives = 299/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALVTMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSHGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPMITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|238751237|ref|ZP_04612731.1| NADH-quinone oxidoreductase subunit M [Yersinia rohdei ATCC 43380] gi|238710511|gb|EEQ02735.1| NADH-quinone oxidoreductase subunit M [Yersinia rohdei ATCC 43380] Length = 507 Score = 324 bits (830), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 175/430 (40%), Positives = 271/430 (63%), Gaps = 13/430 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F +HL +DG+S+L+VVLT L IL SW+ IQ N + + L + VIG Sbjct: 71 WIPRFGIEFHLALDGLSLLMVVLTGLLGVLAILCSWREIQRNQGFFYLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIAAATKFFIYTQASGLIMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ + + + K P S ++Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHYKATGVWTFNYENLLKTPMSHHVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAFCQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ FQ + V+A+FG+V Sbjct: 371 MRQMGGLWGRIKYLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVIATFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G K ++ L +S RE ++ + VL V G+YP PI DT Sbjct: 431 FASVYSLIMMQRAYYGAPKSQEA--LPGMSARELSIILLLVVLLVLLGVYPQPILDTSHA 488 Query: 479 PLSSIIENYT 488 +S++ + ++ Sbjct: 489 AMSNVQQWFS 498 >gi|71065162|ref|YP_263889.1| NADH dehydrogenase subunit M [Psychrobacter arcticus 273-4] gi|71038147|gb|AAZ18455.1| NADH dehydrogenase I, subunit M [Psychrobacter arcticus 273-4] Length = 541 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 191/480 (39%), Positives = 277/480 (57%), Gaps = 36/480 (7%) Query: 42 TINFIFSLFVWSVFDKGRSSFQMIE-----------YYHWIDYF-CSYHLGVDGISILLV 89 T+ F+ S+ +W D S Q+I WI F S+HL +DG+S+++V Sbjct: 44 TLTFVLSMVLWQYGDFSGMSQQVIAPDANVPWVAEFSVPWIPSFGISFHLALDGLSLMMV 103 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 LT L + SW IQ + + L VIG FL++DM LF+ F+E L+P++ Sbjct: 104 ALTGLLGVAAVACSWNEIQRRVGFFHLNLLWSLGGVIGVFLAIDMFLFFFFWEMMLVPIY 163 Query: 150 VIIGVWG----GSERIYAAYKFFLYTFFGSIFMLFAI---VVMCWEKK---TSSIIDLYA 199 +I +WG G + YAA KFF+YT + ML I V++ + +K + + DL Sbjct: 164 FLIAIWGHDVVGKTKEYAATKFFIYTQASGLIMLVGILILVIISYAQKGVVSFNYNDLLG 223 Query: 200 MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 S + +Y + + FF FA+K+P+ PFH WLP+AH QAPTAGSV LAG+++K YG Sbjct: 224 TSLGGW--EYPIMLCFFIGFAVKLPIIPFHGWLPDAHAQAPTAGSVDLAGVLIKTAAYGL 281 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 IRF+LPLFP ASQ FAP+ L I I Y + ++ +QTD+K+L+AY+SI+HMG+V + I+ Sbjct: 282 IRFVLPLFPAASQDFAPIAMTLGTIGIFYGAWLAFMQTDMKRLLAYTSISHMGFVVLAIY 341 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 +G ++G M QML+HGL S+ALF G +Y+RLHTRD+ GG+ YA ++M F Sbjct: 342 AGTLLSLQGLMIQMLAHGLSSAALFIMAGQLYERLHTRDLTLMGGMWGQFRYYAPILMFF 401 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 A +G+PGT FIGEFL++ F VLA+F +VL+ LYSL L K +FG + + Sbjct: 402 CAALLGIPGTGNFIGEFLILFGAFAQYPVFVVLATFSLVLAGLYSLILIHKALFGTNNIK 461 Query: 440 KV------------QQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 +V + LKDL RE ++ +A V+ G+YP P DT S + I Y Sbjct: 462 EVALKETKSHGLPERPLKDLGKRELSLLLMLAAGLVWLGLYPQPFLDTSSHAMQWINNAY 521 >gi|317048928|ref|YP_004116576.1| proton-translocating NADH-quinone oxidoreductase subunit M [Pantoea sp. At-9b] gi|316950545|gb|ADU70020.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pantoea sp. At-9b] Length = 506 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 197/509 (38%), Positives = 307/509 (60%), Gaps = 32/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-------- 52 M LP+L I+ PF+G + + LG ++ +AL + + SL +W Sbjct: 1 MLLPWLIII---PFVGGLLCWLAERLG--KKVPRWIALITMGLTLVLSLQLWLQGGYSLT 55 Query: 53 --SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE 109 + + +S+FQ+ WI F ++HL +DG+S+L+VVLT L +L SW I++ Sbjct: 56 QAAGMPQWQSTFQVA----WIPRFGINFHLALDGLSLLMVVLTGLLGLMAVLCSWNEIEK 111 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAA 164 + + + + VIG FLS+DM LF+ F+E L+PM+ +I +WG G RI AA Sbjct: 112 YQGFFHLNLMWILGGVIGVFLSIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAA 171 Query: 165 YKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA---MSKFPFS--IQYWMWIAFFCSF 219 KFF+YT + ML AI+ + + ++ + ++ + K P S ++Y + + FF +F Sbjct: 172 TKFFIYTQASGLVMLIAILALVFVHYNATGVWTFSYEELLKTPMSHTVEYLLMLGFFIAF 231 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 A+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 232 AVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPHASAEFAPIAM 291 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 +L +I I Y + ++ QTDIK+LIAY+SI+HMG+V I I++G + +GA+ QM++HGL Sbjct: 292 WLGVIGIFYGAWMAFAQTDIKRLIAYTSISHMGFVLIAIYTGSQLAFQGAVVQMIAHGLS 351 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 ++ALF G +Y+RLHTRD+ GGL + + + F +AN+G+PGT F GEF+++ Sbjct: 352 AAALFILCGQLYERLHTRDMRQMGGLWSRIKWIPGLSLFFAVANLGMPGTGNFAGEFMIL 411 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIA 459 FQ + V+A+FG+V +++YSL + ++ +G +K + L +S RE M+ + Sbjct: 412 TGSFQVVPVIIVIATFGLVFASVYSLVMMQRAYYGEAKSQA--PLPGMSPREFIMIMVLV 469 Query: 460 VLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 VL V G+YP PI DT +S+I + +T Sbjct: 470 VLLVLLGVYPQPILDTSHAAMSNIQQWFT 498 >gi|145596564|ref|YP_001160861.1| proton-translocating NADH-quinone oxidoreductase, chain M [Salinispora tropica CNB-440] gi|145305901|gb|ABP56483.1| proton-translocating NADH-quinone oxidoreductase, chain M [Salinispora tropica CNB-440] Length = 510 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 188/496 (37%), Positives = 294/496 (59%), Gaps = 17/496 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGR 59 + PFLS++T P +G V+ RR VALG S + + S+ +W + G Sbjct: 3 DFPFLSVLTVAPLVGALVVAVLPR----RRPELAKQVALGWSLLVLVLSVVMWVTWQTGG 58 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE---YM 115 FQ E Y WI ++ ++ DGI++++++L L P IL+SW + + R Y Sbjct: 59 DRFQFRESYPWIPNWGVNFTFAADGIALVMLMLIALLVPLVILASWHDAESSKRSVPVYF 118 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 LVLE +IG F + D+ LFY+FFE L+PM+ +IG +GG +R YAA KFFLY+ G Sbjct: 119 ALLLVLECTMIGVFAAADVFLFYVFFEVMLVPMYFLIGSYGGHQRQYAAVKFFLYSLVGG 178 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLP 233 +FML A V+ W + D A+S+ S + W+++ FF +FAIK P FPFHTWLP Sbjct: 179 LFML-AAVIGLWVVGGKTF-DWVALSQVDISTGAERWLFLGFFVAFAIKAPFFPFHTWLP 236 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +A AP + L G++ K+G +G +R+ LPLFP A+++FAP L +I IIYA+L++ Sbjct: 237 DAGGAAPAGAAALLVGVLDKVGTFGILRYCLPLFPDAAKWFAPWALALGVIGIIYAALLA 296 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + Q D+K+L++Y+SIAH G++ IGIF+ GA+ M++HGL + LF VG++ R Sbjct: 297 VGQNDLKRLVSYTSIAHFGFIGIGIFAFTSQAATGAVLYMVNHGLATGLLFLVVGMLVAR 356 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 + I +GG +P A V+ +A++ LPGT+ FI EFLV++ F + VAV+A Sbjct: 357 RGSALISDFGGAGKLVPLLAGVLFFAGLASLALPGTAPFISEFLVLIGTFSVNKPVAVIA 416 Query: 414 SFGVVLSALYSLWLYRKVVFGV--SKCEKVQQLK-DLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+A Y LW+ ++ G +V+ +K DL+LRE+ +V P+ L V G YP Sbjct: 417 TVGIILAAAYVLWMVQRTTQGTLNPALTEVEGMKRDLNLREKVVVAPLVALIVLLGFYPK 476 Query: 471 PIRDTFSVPLSSIIEN 486 P+ D + + + +++ Sbjct: 477 PVTDVINPAVQATMQD 492 >gi|24113649|ref|NP_708159.1| NADH dehydrogenase subunit M [Shigella flexneri 2a str. 301] gi|30063703|ref|NP_837874.1| NADH dehydrogenase subunit M [Shigella flexneri 2a str. 2457T] gi|110806240|ref|YP_689760.1| NADH dehydrogenase subunit M [Shigella flexneri 5 str. 8401] gi|24052711|gb|AAN43866.1| NADH dehydrogenase I chain M [Shigella flexneri 2a str. 301] gi|30041958|gb|AAP17684.1| NADH dehydrogenase I chain M [Shigella flexneri 2a str. 2457T] gi|110615788|gb|ABF04455.1| NADH dehydrogenase I chain M [Shigella flexneri 5 str. 8401] gi|281601718|gb|ADA74702.1| NADH dehydrogenase I chain M [Shigella flexneri 2002017] gi|313651100|gb|EFS15499.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella flexneri 2a str. 2457T] gi|332754925|gb|EGJ85290.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella flexneri 4343-70] gi|332755326|gb|EGJ85690.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella flexneri K-671] gi|332756259|gb|EGJ86610.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella flexneri 2747-71] gi|332766096|gb|EGJ96306.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Shigella flexneri 2930-71] gi|333001826|gb|EGK21392.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella flexneri K-218] gi|333016325|gb|EGK35656.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella flexneri K-304] Length = 509 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 196/513 (38%), Positives = 299/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMTFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|15802824|ref|NP_288851.1| NADH dehydrogenase subunit M [Escherichia coli O157:H7 EDL933] gi|15832415|ref|NP_311188.1| NADH dehydrogenase subunit M [Escherichia coli O157:H7 str. Sakai] gi|16130212|ref|NP_416780.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli str. K-12 substr. MG1655] gi|89109095|ref|AP_002875.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli str. K-12 substr. W3110] gi|157157094|ref|YP_001463620.1| NADH dehydrogenase subunit M [Escherichia coli E24377A] gi|157161765|ref|YP_001459083.1| NADH dehydrogenase subunit M [Escherichia coli HS] gi|168748126|ref|ZP_02773148.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4113] gi|168755029|ref|ZP_02780036.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4401] gi|168761284|ref|ZP_02786291.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4501] gi|168767903|ref|ZP_02792910.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4486] gi|168772997|ref|ZP_02798004.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4196] gi|168780132|ref|ZP_02805139.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4076] gi|168787184|ref|ZP_02812191.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC869] gi|168798447|ref|ZP_02823454.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC508] gi|170019414|ref|YP_001724368.1| NADH dehydrogenase subunit M [Escherichia coli ATCC 8739] gi|170081894|ref|YP_001731214.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli str. K-12 substr. DH10B] gi|170683852|ref|YP_001744475.1| NADH dehydrogenase subunit M [Escherichia coli SMS-3-5] gi|188496003|ref|ZP_03003273.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli 53638] gi|191166494|ref|ZP_03028324.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli B7A] gi|193062353|ref|ZP_03043448.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli E22] gi|193068267|ref|ZP_03049231.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli E110019] gi|194427120|ref|ZP_03059671.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli B171] gi|194436046|ref|ZP_03068148.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli 101-1] gi|195935654|ref|ZP_03081036.1| NADH dehydrogenase subunit M [Escherichia coli O157:H7 str. EC4024] gi|208807999|ref|ZP_03250336.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4206] gi|208814575|ref|ZP_03255904.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4045] gi|208820280|ref|ZP_03260600.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4042] gi|209396119|ref|YP_002271686.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4115] gi|209919725|ref|YP_002293809.1| NADH dehydrogenase subunit M [Escherichia coli SE11] gi|217327471|ref|ZP_03443554.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. TW14588] gi|218554833|ref|YP_002387746.1| NADH dehydrogenase subunit M [Escherichia coli IAI1] gi|218700751|ref|YP_002408380.1| NADH dehydrogenase subunit M [Escherichia coli IAI39] gi|238901452|ref|YP_002927248.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli BW2952] gi|253772801|ref|YP_003035632.1| NADH dehydrogenase subunit M [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162286|ref|YP_003045394.1| NADH dehydrogenase subunit M [Escherichia coli B str. REL606] gi|254794169|ref|YP_003079006.1| NADH dehydrogenase subunit M [Escherichia coli O157:H7 str. TW14359] gi|256017567|ref|ZP_05431432.1| NADH dehydrogenase subunit M [Shigella sp. D9] gi|256022039|ref|ZP_05435904.1| NADH dehydrogenase subunit M [Escherichia sp. 4_1_40B] gi|260844864|ref|YP_003222642.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli O103:H2 str. 12009] gi|260869000|ref|YP_003235402.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli O111:H- str. 11128] gi|261223269|ref|ZP_05937550.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli O157:H7 str. FRIK2000] gi|261259181|ref|ZP_05951714.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli O157:H7 str. FRIK966] gi|291283518|ref|YP_003500336.1| NADH-quinone oxidoreductase subunit M [Escherichia coli O55:H7 str. CB9615] gi|293415570|ref|ZP_06658213.1| NADH-quinone oxidoreductase subunit M [Escherichia coli B185] gi|293446614|ref|ZP_06663036.1| NADH-quinone oxidoreductase subunit M [Escherichia coli B088] gi|300818123|ref|ZP_07098335.1| NADH dehydrogenase subunit M [Escherichia coli MS 107-1] gi|300822148|ref|ZP_07102290.1| NADH dehydrogenase subunit M [Escherichia coli MS 119-7] gi|300924536|ref|ZP_07140500.1| NADH dehydrogenase subunit M [Escherichia coli MS 182-1] gi|300931370|ref|ZP_07146701.1| NADH dehydrogenase subunit M [Escherichia coli MS 187-1] gi|300936841|ref|ZP_07151730.1| NADH dehydrogenase subunit M [Escherichia coli MS 21-1] gi|300948579|ref|ZP_07162672.1| NADH dehydrogenase subunit M [Escherichia coli MS 116-1] gi|300956463|ref|ZP_07168752.1| NADH dehydrogenase subunit M [Escherichia coli MS 175-1] gi|301024075|ref|ZP_07187789.1| NADH dehydrogenase subunit M [Escherichia coli MS 69-1] gi|301026947|ref|ZP_07190340.1| NADH dehydrogenase subunit M [Escherichia coli MS 196-1] gi|301328769|ref|ZP_07221817.1| NADH dehydrogenase subunit M [Escherichia coli MS 78-1] gi|301647626|ref|ZP_07247422.1| NADH dehydrogenase subunit M [Escherichia coli MS 146-1] gi|307138941|ref|ZP_07498297.1| NADH dehydrogenase subunit M [Escherichia coli H736] gi|307311163|ref|ZP_07590807.1| proton-translocating NADH-quinone oxidoreductase, chain M [Escherichia coli W] gi|309793156|ref|ZP_07687584.1| NADH dehydrogenase subunit M [Escherichia coli MS 145-7] gi|312973464|ref|ZP_07787636.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Escherichia coli 1827-70] gi|331642915|ref|ZP_08344050.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli H736] gi|331653719|ref|ZP_08354720.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli M718] gi|331668975|ref|ZP_08369823.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli TA271] gi|331678223|ref|ZP_08378898.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli H591] gi|331683949|ref|ZP_08384545.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli H299] gi|332278577|ref|ZP_08390990.1| NADH-quinone oxidoreductase subunit M [Shigella sp. D9] gi|84028765|sp|P0AFE9|NUOM_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit M; AltName: Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1 subunit M; AltName: Full=NUO13 gi|84028766|sp|P0AFE8|NUOM_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit M; AltName: Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1 subunit M; AltName: Full=NUO13 gi|12516624|gb|AAG57406.1|AE005459_9 NADH dehydrogenase I chain M [Escherichia coli O157:H7 str. EDL933] gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli str. K-12 substr. MG1655] gi|1799637|dbj|BAA16105.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli str. K12 substr. W3110] gi|13362631|dbj|BAB36584.1| NADH dehydrogenase I chain M [Escherichia coli O157:H7 str. Sakai] gi|157067445|gb|ABV06700.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli HS] gi|157079124|gb|ABV18832.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli E24377A] gi|169754342|gb|ACA77041.1| proton-translocating NADH-quinone oxidoreductase, chain M [Escherichia coli ATCC 8739] gi|169889729|gb|ACB03436.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli str. K-12 substr. DH10B] gi|170521570|gb|ACB19748.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli SMS-3-5] gi|187771108|gb|EDU34952.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4196] gi|188017275|gb|EDU55397.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4113] gi|188491202|gb|EDU66305.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli 53638] gi|189002206|gb|EDU71192.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4076] gi|189357627|gb|EDU76046.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4401] gi|189362855|gb|EDU81274.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4486] gi|189368317|gb|EDU86733.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4501] gi|189372784|gb|EDU91200.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC869] gi|189378900|gb|EDU97316.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC508] gi|190903454|gb|EDV63173.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli B7A] gi|192932019|gb|EDV84618.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli E22] gi|192958546|gb|EDV88985.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli E110019] gi|194414741|gb|EDX31012.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli B171] gi|194424774|gb|EDX40759.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli 101-1] gi|208727800|gb|EDZ77401.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4206] gi|208735852|gb|EDZ84539.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4045] gi|208740403|gb|EDZ88085.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4042] gi|209157519|gb|ACI34952.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. EC4115] gi|209765178|gb|ACI80901.1| NADH dehydrogenase I chain M [Escherichia coli] gi|209765180|gb|ACI80902.1| NADH dehydrogenase I chain M [Escherichia coli] gi|209765182|gb|ACI80903.1| NADH dehydrogenase I chain M [Escherichia coli] gi|209765184|gb|ACI80904.1| NADH dehydrogenase I chain M [Escherichia coli] gi|209765186|gb|ACI80905.1| NADH dehydrogenase I chain M [Escherichia coli] gi|209912984|dbj|BAG78058.1| NADH dehydrogenase I chain M [Escherichia coli SE11] gi|217319838|gb|EEC28263.1| NADH-quinone oxidoreductase, M subunit [Escherichia coli O157:H7 str. TW14588] gi|218361601|emb|CAQ99193.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli IAI1] gi|218370737|emb|CAR18550.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli IAI39] gi|238861878|gb|ACR63876.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli BW2952] gi|242377910|emb|CAQ32679.1| NADH:ubiquinone oxidoreductase, membrane subunit M, subunit of NADH:ubiquinone oxidoreductase I [Escherichia coli BL21(DE3)] gi|253323845|gb|ACT28447.1| proton-translocating NADH-quinone oxidoreductase, chain M [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974187|gb|ACT39858.1| NADH dehydrogenase subunit M [Escherichia coli B str. REL606] gi|253978354|gb|ACT44024.1| NADH dehydrogenase subunit M [Escherichia coli BL21(DE3)] gi|254593569|gb|ACT72930.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli O157:H7 str. TW14359] gi|257760011|dbj|BAI31508.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli O103:H2 str. 12009] gi|257765356|dbj|BAI36851.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli O111:H- str. 11128] gi|260448630|gb|ACX39052.1| proton-translocating NADH-quinone oxidoreductase, chain M [Escherichia coli DH1] gi|290763391|gb|ADD57352.1| NADH-quinone oxidoreductase subunit M [Escherichia coli O55:H7 str. CB9615] gi|291323444|gb|EFE62872.1| NADH-quinone oxidoreductase subunit M [Escherichia coli B088] gi|291433218|gb|EFF06197.1| NADH-quinone oxidoreductase subunit M [Escherichia coli B185] gi|299879494|gb|EFI87705.1| NADH dehydrogenase subunit M [Escherichia coli MS 196-1] gi|300316733|gb|EFJ66517.1| NADH dehydrogenase subunit M [Escherichia coli MS 175-1] gi|300396731|gb|EFJ80269.1| NADH dehydrogenase subunit M [Escherichia coli MS 69-1] gi|300419254|gb|EFK02565.1| NADH dehydrogenase subunit M [Escherichia coli MS 182-1] gi|300451927|gb|EFK15547.1| NADH dehydrogenase subunit M [Escherichia coli MS 116-1] gi|300458028|gb|EFK21521.1| NADH dehydrogenase subunit M [Escherichia coli MS 21-1] gi|300460832|gb|EFK24325.1| NADH dehydrogenase subunit M [Escherichia coli MS 187-1] gi|300525278|gb|EFK46347.1| NADH dehydrogenase subunit M [Escherichia coli MS 119-7] gi|300529267|gb|EFK50329.1| NADH dehydrogenase subunit M [Escherichia coli MS 107-1] gi|300844831|gb|EFK72591.1| NADH dehydrogenase subunit M [Escherichia coli MS 78-1] gi|301074253|gb|EFK89059.1| NADH dehydrogenase subunit M [Escherichia coli MS 146-1] gi|306908669|gb|EFN39166.1| proton-translocating NADH-quinone oxidoreductase, chain M [Escherichia coli W] gi|308123442|gb|EFO60704.1| NADH dehydrogenase subunit M [Escherichia coli MS 145-7] gi|309702589|emb|CBJ01917.1| NADH-quinone oxidoreductase chain M [Escherichia coli ETEC H10407] gi|310332059|gb|EFP99294.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Escherichia coli 1827-70] gi|315061569|gb|ADT75896.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli W] gi|315136911|dbj|BAJ44070.1| NADH-quinone oxidoreductase subunit M [Escherichia coli DH1] gi|315615546|gb|EFU96178.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Escherichia coli 3431] gi|320178750|gb|EFW53713.1| NADH-ubiquinone oxidoreductase chain M [Shigella boydii ATCC 9905] gi|320192102|gb|EFW66747.1| NADH-ubiquinone oxidoreductase chain M [Escherichia coli O157:H7 str. EC1212] gi|320199865|gb|EFW74454.1| NADH-ubiquinone oxidoreductase chain M [Escherichia coli EC4100B] gi|320641104|gb|EFX10583.1| NADH:ubiquinone oxidoreductase subunit M [Escherichia coli O157:H7 str. G5101] gi|320646492|gb|EFX15411.1| NADH:ubiquinone oxidoreductase subunit M [Escherichia coli O157:H- str. 493-89] gi|320651589|gb|EFX19969.1| NADH:ubiquinone oxidoreductase subunit M [Escherichia coli O157:H- str. H 2687] gi|320657341|gb|EFX25143.1| NADH:ubiquinone oxidoreductase subunit M [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663043|gb|EFX30360.1| NADH:ubiquinone oxidoreductase subunit M [Escherichia coli O55:H7 str. USDA 5905] gi|320667861|gb|EFX34769.1| NADH:ubiquinone oxidoreductase subunit M [Escherichia coli O157:H7 str. LSU-61] gi|323161611|gb|EFZ47496.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Escherichia coli E128010] gi|323171958|gb|EFZ57602.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Escherichia coli LT-68] gi|323176798|gb|EFZ62388.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Escherichia coli 1180] gi|323184404|gb|EFZ69780.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Escherichia coli 1357] gi|323377851|gb|ADX50119.1| proton-translocating NADH-quinone oxidoreductase, chain M [Escherichia coli KO11] gi|323936567|gb|EGB32854.1| proton-translocating NADH-quinone oxidoreductase [Escherichia coli E1520] gi|323941026|gb|EGB37213.1| proton-translocating NADH-quinone oxidoreductase [Escherichia coli E482] gi|323944790|gb|EGB40856.1| proton-translocating NADH-quinone oxidoreductase [Escherichia coli H120] gi|323961460|gb|EGB57070.1| proton-translocating NADH-quinone oxidoreductase [Escherichia coli H489] gi|323973018|gb|EGB68212.1| proton-translocating NADH-quinone oxidoreductase [Escherichia coli TA007] gi|324020873|gb|EGB90092.1| NADH dehydrogenase subunit M [Escherichia coli MS 117-3] gi|324117845|gb|EGC11744.1| proton-translocating NADH-quinone oxidoreductase [Escherichia coli E1167] gi|326339628|gb|EGD63439.1| NADH-ubiquinone oxidoreductase chain M [Escherichia coli O157:H7 str. 1125] gi|326344090|gb|EGD67851.1| NADH-ubiquinone oxidoreductase chain M [Escherichia coli O157:H7 str. 1044] gi|331039713|gb|EGI11933.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli H736] gi|331048568|gb|EGI20644.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli M718] gi|331064169|gb|EGI36080.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli TA271] gi|331074683|gb|EGI46003.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli H591] gi|331078901|gb|EGI50103.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli H299] gi|332100929|gb|EGJ04275.1| NADH-quinone oxidoreductase subunit M [Shigella sp. D9] gi|332344058|gb|AEE57392.1| proton-translocating NADH-quinone oxidoreductase, chain M protein [Escherichia coli UMNK88] Length = 509 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 196/513 (38%), Positives = 299/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|327394571|dbj|BAK11993.1| NADH-quinone oxidoreductase chain M NuoM [Pantoea ananatis AJ13355] Length = 471 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 178/430 (41%), Positives = 273/430 (63%), Gaps = 13/430 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F ++HL +DG+S+L+VVLT L +L SW I++ + + + + VIG Sbjct: 36 WIPRFGINFHLALDGLSLLMVVLTGLLGLMAVLCSWNEIEKYQGFFHLNLMWILGGVIGV 95 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 96 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLIAIL 155 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ + + + K P S ++Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 156 ALVFVHYNATGVWTFNYEQLLKTPMSHTVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 215 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ QTD Sbjct: 216 APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGIIGIFYGAWMAFSQTD 275 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+SI+HMG+V I I++G + ++GA+ QM++HGL ++ALF G +Y+RLHTRD Sbjct: 276 IKRLIAYTSISHMGFVLIAIYTGSQLAIQGAVIQMIAHGLSAAALFILCGQLYERLHTRD 335 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +AN+G+PGT F+GEF+++ FQ + V+A+FG+V Sbjct: 336 MRQMGGLWSRIKWIPGLSLFFAVANLGMPGTGNFVGEFMILTGSFQVVPVIIVIATFGLV 395 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G +K + L +S RE + + VL V GIYP PI DT Sbjct: 396 FASVYSLVMMQRAYYGEAKSKD--PLPGMSAREFLTIGVLVVLLVLLGIYPQPILDTSHA 453 Query: 479 PLSSIIENYT 488 +S+I + +T Sbjct: 454 AMSNIQQWFT 463 >gi|218705807|ref|YP_002413326.1| NADH dehydrogenase subunit M [Escherichia coli UMN026] gi|293405743|ref|ZP_06649735.1| NADH-ubiquinone oxidoreductase chain M [Escherichia coli FVEC1412] gi|293410637|ref|ZP_06654213.1| NADH-ubiquinone oxidoreductase chain M [Escherichia coli B354] gi|298381426|ref|ZP_06991025.1| NADH-quinone oxidoreductase subunit M [Escherichia coli FVEC1302] gi|300896951|ref|ZP_07115432.1| NADH dehydrogenase subunit M [Escherichia coli MS 198-1] gi|331663791|ref|ZP_08364701.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli TA143] gi|218432904|emb|CAR13798.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli UMN026] gi|284922265|emb|CBG35350.1| NADH-quinone oxidoreductase chain M [Escherichia coli 042] gi|291427951|gb|EFF00978.1| NADH-ubiquinone oxidoreductase chain M [Escherichia coli FVEC1412] gi|291471105|gb|EFF13589.1| NADH-ubiquinone oxidoreductase chain M [Escherichia coli B354] gi|298278868|gb|EFI20382.1| NADH-quinone oxidoreductase subunit M [Escherichia coli FVEC1302] gi|300359219|gb|EFJ75089.1| NADH dehydrogenase subunit M [Escherichia coli MS 198-1] gi|323967718|gb|EGB63130.1| proton-translocating NADH-quinone oxidoreductase [Escherichia coli M863] gi|323977522|gb|EGB72608.1| proton-translocating NADH-quinone oxidoreductase [Escherichia coli TW10509] gi|327252547|gb|EGE64206.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Escherichia coli STEC_7v] gi|331059590|gb|EGI31567.1| NADH-quinone oxidoreductase subunit M (NADHdehydrogenase I subunit M) (NDH-1 subunit M) (NUO13) [Escherichia coli TA143] Length = 509 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 196/513 (38%), Positives = 299/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSNGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|238798415|ref|ZP_04641896.1| NADH-quinone oxidoreductase subunit M [Yersinia mollaretii ATCC 43969] gi|238717729|gb|EEQ09564.1| NADH-quinone oxidoreductase subunit M [Yersinia mollaretii ATCC 43969] Length = 507 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 174/427 (40%), Positives = 269/427 (62%), Gaps = 13/427 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F +HL +DG+S+L+VVLT L IL SW+ IQ N + + L + VIG Sbjct: 71 WIPRFGIEFHLALDGLSLLMVVLTGLLGVLAILCSWREIQRNQGFFYLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIAAATKFFIYTQASGLIMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ + + + K P S ++Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHYKATGVWTFNYENLLKTPMSHNVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L ++ I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHEFAPIAMWLGVVGIFYGAWMAFCQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ FQ + V+++FG+V Sbjct: 371 MRQMGGLWGRIKYLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G K E + L +S RE ++ + VL V G+YP PI DT Sbjct: 431 FASVYSLIMMQRAYYGAPKSE--EALPGMSARELSIILLLVVLLVLLGVYPQPILDTSHA 488 Query: 479 PLSSIIE 485 +S++ + Sbjct: 489 AMSNVQQ 495 >gi|260856321|ref|YP_003230212.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli O26:H11 str. 11368] gi|257754970|dbj|BAI26472.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli O26:H11 str. 11368] gi|323156427|gb|EFZ42582.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Escherichia coli EPECa14] Length = 509 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 196/513 (38%), Positives = 299/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSRSAIGNIQQ 498 >gi|194433303|ref|ZP_03065583.1| NADH-quinone oxidoreductase, M subunit [Shigella dysenteriae 1012] gi|194418397|gb|EDX34486.1| NADH-quinone oxidoreductase, M subunit [Shigella dysenteriae 1012] gi|332090623|gb|EGI95719.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella dysenteriae 155-74] Length = 509 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 196/513 (38%), Positives = 299/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + +++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYSATGVWTFNYEELLNTPMSSGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKEKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|218548274|ref|YP_002382065.1| NADH dehydrogenase subunit M [Escherichia fergusonii ATCC 35469] gi|218355815|emb|CAQ88428.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia fergusonii ATCC 35469] gi|324112809|gb|EGC06785.1| proton-translocating NADH-quinone oxidoreductase [Escherichia fergusonii B253] gi|325496688|gb|EGC94547.1| NADH dehydrogenase subunit M [Escherichia fergusonii ECD227] Length = 509 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 196/513 (38%), Positives = 299/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSNGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K E ++L +SLRE Sbjct: 406 GEFMILFGSFQVVPMITVISTFGLVFASVYSLAMLHRAYFGKAKSEIASKELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|281179364|dbj|BAI55694.1| NADH dehydrogenase I chain M [Escherichia coli SE15] Length = 509 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 196/513 (38%), Positives = 298/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALVTMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAIQALVFVHYNATGVWTFNYEELLNTPMSNGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|270262803|ref|ZP_06191074.1| hypothetical protein SOD_c04280 [Serratia odorifera 4Rx13] gi|270043487|gb|EFA16580.1| hypothetical protein SOD_c04280 [Serratia odorifera 4Rx13] Length = 509 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 178/438 (40%), Positives = 274/438 (62%), Gaps = 13/438 (2%) Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 KG +Q WI F S HL +DG+S+L+VVLT L IL SW+ IQ+ + Sbjct: 58 KGIPQWQSEFLLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAILCSWREIQKYQGFFH 117 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLY 170 + L + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+Y Sbjct: 118 LNLLWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIY 177 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPM 225 T + ML AI+ + + ++ + D + + P S +QY + + FF +FA+K+P+ Sbjct: 178 TQASGLVMLIAIMGLVFVHYNATGVWTFDYEDLLQTPMSHNVQYLLMLGFFIAFAVKMPV 237 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L ++ Sbjct: 238 VPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGMLRFSLPLFPEASHEFAPIAMWLGVVG 297 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F Sbjct: 298 IFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFI 357 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 G +Y+RLHTRD+ GGL + + + F +A +G+PGT F+GEF+++ FQ Sbjct: 358 ICGQLYERLHTRDMREMGGLWGRIKYIPALSLFFAVATLGMPGTGNFVGEFMILFGSFQV 417 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 + V+++FG+V +++YSL + ++ +G +K E Q L ++ RE ++ + VL V Sbjct: 418 VPVITVISTFGLVFASVYSLIMMQRAYYGKAKSE--QPLPGMTARELFIILLLVVLLVLL 475 Query: 466 GIYPVPIRDTFSVPLSSI 483 G+YP PI DT + +S++ Sbjct: 476 GVYPQPILDTSNAAMSNV 493 >gi|292899983|ref|YP_003539352.1| NADH dehydrogenase I chain M [Erwinia amylovora ATCC 49946] gi|291199831|emb|CBJ46955.1| NADH dehydrogenase I chain M [Erwinia amylovora ATCC 49946] Length = 506 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 192/504 (38%), Positives = 303/504 (60%), Gaps = 22/504 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFD--- 56 M LP+L I LPF+G + G + +A+G+ T+ L++ + Sbjct: 1 MLLPWLII---LPFVGGLLCWQGERFGAKLPRWIALIAMGL-TLALSLQLWLQGGYSLSQ 56 Query: 57 -KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 +G +Q WI F ++HL +DG+S+L+VVLT L IL SW I++ + Sbjct: 57 AEGGPQWQAQFSVPWIPRFGIAFHLALDGLSLLMVVLTGLLGVMAILCSWNEIEKWQGFF 116 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFL 169 + L + VIG FL++D+ LF+ F+E L+PM+ +I +WG G RI AA KFF+ Sbjct: 117 HLNLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFI 176 Query: 170 YTFFGSIFMLFAIVVMCWEKKTSSIIDLYA---MSKFPFS--IQYWMWIAFFCSFAIKIP 224 YT + ML AI+ + + ++ + ++ + K P S ++Y + + FF +FA+K+P Sbjct: 177 YTQASGLVMLIAILALVFVHYNATGVWTFSYEQLLKTPMSHGVEYLLMLGFFIAFAVKMP 236 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I Sbjct: 237 VVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPDASAEFAPIAMWLGMI 296 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 I Y + ++ Q DIK+LIAY+SI+HMG+V I I++G + +GA+ QM++HGL ++ALF Sbjct: 297 GIFYGAWMAFSQYDIKRLIAYTSISHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAALF 356 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G +Y+RLHTRD+ GGL + + + F +AN+G+PGT F+GEF+++ F Sbjct: 357 ILCGQLYERLHTRDMRQMGGLWSRIKWLPGLSLFFAVANLGMPGTGNFVGEFMILTGSFH 416 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + + ++A+FG+V +++YSL + ++ +G +K E L+ +S RE M+ + +L V Sbjct: 417 SVPLIIIIATFGLVFASVYSLVMMQRAYYGPAKSET--PLRGMSAREFLMIMVLVLLLVL 474 Query: 465 FGIYPVPIRDTFSVPLSSIIENYT 488 G+YP PI DT +S+I + +T Sbjct: 475 LGVYPQPILDTSHAAMSNIQQWFT 498 >gi|82777685|ref|YP_404034.1| NADH dehydrogenase subunit M [Shigella dysenteriae Sd197] gi|309785019|ref|ZP_07679652.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella dysenteriae 1617] gi|81241833|gb|ABB62543.1| NADH dehydrogenase I chain M [Shigella dysenteriae Sd197] gi|308927389|gb|EFP72863.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella dysenteriae 1617] Length = 509 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 192/509 (37%), Positives = 296/509 (58%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ + +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLMLALSLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYF---------CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SWK I Sbjct: 50 GGYSLTQSAGIPQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE M+ Sbjct: 410 ILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIARQELPGMSLRELFMIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT + +I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|253689137|ref|YP_003018327.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755715|gb|ACT13791.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 511 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 181/439 (41%), Positives = 273/439 (62%), Gaps = 13/439 (2%) Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 G +Q Y WI F HL +DG+S+L+VVLT L IL SW IQ + + Sbjct: 59 GVPQWQSEFYVPWIPRFGIGIHLALDGLSLLMVVLTGLLGVLAILCSWNEIQRYQGFFHL 118 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYT 171 L + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT Sbjct: 119 NLLWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKGSDGKTRITAATKFFIYT 178 Query: 172 FFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMF 226 + ML AI+ + + ++ + + + K P S ++Y + + FF +FA+K+P+ Sbjct: 179 QASGLIMLIAILALVFVHHNATGVWTFNYEDLLKTPMSYGVEYLLMLGFFIAFAVKMPVV 238 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Sbjct: 239 PLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHAFAPIAMWLGVIGI 298 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 Y + ++ QTDIK+LIAY+S++HMG+V I I+SG + +GA+ QM++HGL ++ LF Sbjct: 299 FYGAWLAFKQTDIKRLIAYTSVSHMGFVMIAIYSGNQLAYQGAVIQMIAHGLSAAGLFIL 358 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 G +Y+RLHTRD+ GGL + + + F +A +G+PGT F+GEF+++ +Q Sbjct: 359 CGQLYERLHTRDMREMGGLWARLKYLPALSLFFAVATLGMPGTGNFVGEFMILFGSYQVV 418 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 + V+++FG+V +++YSL + ++ +G K + + LK +S+RE +V + VL V G Sbjct: 419 PVITVISTFGLVFASVYSLIMMQRAYYGAPKSD--EPLKSMSIRELSIVMLLVVLLVLLG 476 Query: 467 IYPVPIRDTFSVPLSSIIE 485 +YP PI DT S +S+I + Sbjct: 477 VYPQPILDTSSAAMSNIQQ 495 >gi|324006673|gb|EGB75892.1| NADH dehydrogenase subunit M [Escherichia coli MS 57-2] Length = 509 Score = 323 bits (827), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 195/513 (38%), Positives = 299/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALVTMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 W+ I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WEEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSNGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|330860323|emb|CBX70636.1| NADH-quinone oxidoreductase subunit M [Yersinia enterocolitica W22703] Length = 512 Score = 323 bits (827), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 175/433 (40%), Positives = 272/433 (62%), Gaps = 13/433 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S+HL +DG+S+L+VVLT L IL SW+ IQ N + + L + VIG Sbjct: 71 WIPRFGISFHLALDGLSLLMVVLTGLLGVLAILCSWREIQRNQGFFYLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIAAATKFFIYTQASGLIMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I + + K P S +++ + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHYNATGIWTFNYEDLLKTPMSHNVEWLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LP FP AS FAP+ +L +I I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPFFPNASAEFAPIAMWLGVIGIFYGAWMAFCQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ FQ + V+++FG+V Sbjct: 371 MRQMGGLWGRIKYLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G K E+ L +S RE ++ + VL V G+YP PI DT Sbjct: 431 FASVYSLIMMQRAYYGAPKSEEA--LPGMSARELSIILLLVVLLVLLGVYPQPILDTSHA 488 Query: 479 PLSSIIENYTLKT 491 +S++ + ++ + Sbjct: 489 AMSNVQQWFSASS 501 >gi|333002644|gb|EGK22204.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella flexneri K-272] gi|333016528|gb|EGK35858.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella flexneri K-227] Length = 509 Score = 323 bits (827), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 195/513 (38%), Positives = 298/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+ VLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMAVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMTFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|238784989|ref|ZP_04628987.1| NADH-quinone oxidoreductase subunit M [Yersinia bercovieri ATCC 43970] gi|238714105|gb|EEQ06119.1| NADH-quinone oxidoreductase subunit M [Yersinia bercovieri ATCC 43970] Length = 507 Score = 323 bits (827), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 173/427 (40%), Positives = 269/427 (62%), Gaps = 13/427 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F +HL +DG+S+L+VVLT L IL SW+ IQ N + + L + VIG Sbjct: 71 WIPRFGIEFHLALDGLSLLMVVLTGLLGALAILCSWREIQRNQGFFYLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIAAATKFFIYTQASGLIMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ + + + K P S ++Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHYKATGVWTFNYENLLKTPMSHNVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L ++ I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVVGIFYGAWMAFCQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ FQ + V+++FG+V Sbjct: 371 MRQMGGLWGRIKYLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++Y+L + ++ +G K E+ L +S RE ++ + VL V G+YP PI DT Sbjct: 431 FASVYALIMMQRAYYGAPKSEEA--LPGMSARELSIILLLVVLLVLLGVYPQPILDTSHA 488 Query: 479 PLSSIIE 485 +S++ + Sbjct: 489 AMSNVQQ 495 >gi|187734003|ref|YP_001881098.1| NADH dehydrogenase subunit M [Shigella boydii CDC 3083-94] gi|187430995|gb|ACD10269.1| NADH-quinone oxidoreductase, M subunit [Shigella boydii CDC 3083-94] gi|320177159|gb|EFW52171.1| NADH-ubiquinone oxidoreductase chain M [Shigella dysenteriae CDC 74-1112] Length = 509 Score = 323 bits (827), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 179/439 (40%), Positives = 272/439 (61%), Gaps = 16/439 (3%) Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 +S F M WI F S HL +DG+S+L+VVLT L +L SWK I++ + + Sbjct: 64 QSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLN 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTF 172 + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT Sbjct: 120 LMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQ 179 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFCSFAIKIPMFP 227 + ML AI+ + + ++ + + + P S ++Y + + FF +FA+K+P+ P Sbjct: 180 ASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVP 239 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Sbjct: 240 LHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIF 299 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ LF Sbjct: 300 YGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILC 359 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+GEF+++ FQ Sbjct: 360 GQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVP 419 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFG 466 + V+++FG+V +++YSL + + FG +K + Q+L +SLRE M+ + VL V G Sbjct: 420 VITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFMILLLVVLLVLLG 479 Query: 467 IYPVPIRDTFSVPLSSIIE 485 YP PI DT + +I + Sbjct: 480 FYPQPILDTSHSAIGNIQQ 498 >gi|74312795|ref|YP_311214.1| NADH dehydrogenase subunit M [Shigella sonnei Ss046] gi|73856272|gb|AAZ88979.1| NADH dehydrogenase I chain M [Shigella sonnei Ss046] gi|323168554|gb|EFZ54234.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella sonnei 53G] Length = 509 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 196/511 (38%), Positives = 294/511 (57%), Gaps = 39/511 (7%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVWSV 54 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALSLQLW-- 47 Query: 55 FDKGRSSFQMIEYYHWIDYF---------CSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 G S Q W F S HL +DG+S+L+VVLT L +L SWK Sbjct: 48 LQGGYSLTQSAGIPQWQSEFDMPWIPRLGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWK 107 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSER 160 I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G R Sbjct: 108 EIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTR 167 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAF 215 I AA KFF+YT + ML AI+ + + ++ + + + P S +Y + + F Sbjct: 168 ITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGAEYLLMLGF 227 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 F +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FA Sbjct: 228 FIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFA 287 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 P+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM++ Sbjct: 288 PIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIA 347 Query: 336 HGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGE 395 HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+GE Sbjct: 348 HGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGE 407 Query: 396 FLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCM 454 F+++ FQ + V+++FG+V +++YSL + + FG +K E Q+L +SLRE M Sbjct: 408 FMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSEIASQELPGMSLRELFM 467 Query: 455 VYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + + VL V G YP PI DT + +I + Sbjct: 468 ILLLVVLLVLQGFYPQPILDTSHSAIGNIQQ 498 >gi|238788643|ref|ZP_04632435.1| NADH-quinone oxidoreductase subunit M [Yersinia frederiksenii ATCC 33641] gi|238723238|gb|EEQ14886.1| NADH-quinone oxidoreductase subunit M [Yersinia frederiksenii ATCC 33641] Length = 507 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 174/433 (40%), Positives = 273/433 (63%), Gaps = 13/433 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F ++HL +DG+S+L+VVLT L IL SW+ IQ N + + L + VIG Sbjct: 71 WIPRFGIAFHLALDGLSLLMVVLTGLLGVLAILCSWREIQRNQGFFYLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIAAATKFFIYTQASGLIMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I + + K P S ++Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHYNATGIWTFNYEDLLKTPMSHNVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L ++ I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVVGIFYGAWMAFCQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ FQ + V+++FG+V Sbjct: 371 MRQMGGLWGRIKYLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G K ++ L +S RE ++ + VL V G+YP PI DT Sbjct: 431 FASVYSLIMMQRAYYGAPKSQEA--LPGMSARELSIILLLVVLLVLLGVYPQPILDTSHA 488 Query: 479 PLSSIIENYTLKT 491 +S++ + ++ + Sbjct: 489 AMSNVQQWFSASS 501 >gi|332162378|ref|YP_004298955.1| NADH dehydrogenase subunit M [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606457|emb|CBY27955.1| NADH-ubiquinone oxidoreductase chain M [Yersinia enterocolitica subsp. palearctica Y11] gi|325666608|gb|ADZ43252.1| NADH dehydrogenase subunit M [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 512 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 175/433 (40%), Positives = 272/433 (62%), Gaps = 13/433 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S+HL +DG+S+L+VVLT L IL SW+ IQ N + + L + VIG Sbjct: 71 WIPRFGISFHLALDGLSLLMVVLTGLLGVLAILCSWREIQRNQGFFYLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIAAATKFFIYTQASGLIMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I + + K P S +++ + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHYNATGIWTFNYEDLLKTPMSHNVEWLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LP FP AS FAP+ +L +I I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPFFPNASAEFAPIAMWLGVIGIFYGAWMAFCQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ FQ + V+++FG+V Sbjct: 371 MRQMGGLWGRIKYLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G K E+ L +S RE ++ + VL V G+YP PI DT Sbjct: 431 FASVYSLIMMQRAYYGAPKSEEA--LPGMSARELSIILLLVVLLVLLGVYPQPILDTSHA 488 Query: 479 PLSSIIENYTLKT 491 +S++ + ++ + Sbjct: 489 AMSNVQQWFSASS 501 >gi|82544755|ref|YP_408702.1| NADH dehydrogenase subunit M [Shigella boydii Sb227] gi|81246166|gb|ABB66874.1| NADH dehydrogenase I chain M [Shigella boydii Sb227] gi|320183371|gb|EFW58223.1| NADH-ubiquinone oxidoreductase chain M [Shigella flexneri CDC 796-83] gi|332093528|gb|EGI98586.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella boydii 3594-74] Length = 509 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 179/439 (40%), Positives = 272/439 (61%), Gaps = 16/439 (3%) Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 +S F M WI F S HL +DG+S+L+VVLT L +L SWK I++ + + Sbjct: 64 QSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLN 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTF 172 + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT Sbjct: 120 LMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQ 179 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFCSFAIKIPMFP 227 + ML AI+ + + ++ + + + P S ++Y + + FF +FA+K+P+ P Sbjct: 180 ASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVP 239 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Sbjct: 240 LHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIF 299 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ LF Sbjct: 300 YGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILC 359 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+GEF+++ FQ Sbjct: 360 GQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVP 419 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFG 466 + V+++FG+V +++YSL + + FG +K + Q+L +SLRE M+ + VL V G Sbjct: 420 VITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFMILLLVVLLVLLG 479 Query: 467 IYPVPIRDTFSVPLSSIIE 485 YP PI DT + +I + Sbjct: 480 FYPQPILDTSHSAIGNIQQ 498 >gi|332088407|gb|EGI93525.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella boydii 5216-82] Length = 509 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 179/439 (40%), Positives = 272/439 (61%), Gaps = 16/439 (3%) Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 +S F M WI F S HL +DG+S+L+VVLT L +L SWK I++ + + Sbjct: 64 QSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLN 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTF 172 + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT Sbjct: 120 LMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQ 179 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFCSFAIKIPMFP 227 + ML AI+ + + ++ + + + P S ++Y + + FF +FA+K+P+ P Sbjct: 180 ASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVP 239 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Sbjct: 240 LHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIF 299 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ LF Sbjct: 300 YGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILC 359 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+GEF+++ FQ Sbjct: 360 GQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVP 419 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFG 466 + V+++FG+V +++YSL + + FG +K + Q+L +SLRE M+ + VL V G Sbjct: 420 VITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFMILLLVVLLVLLG 479 Query: 467 IYPVPIRDTFSVPLSSIIE 485 YP PI DT + +I + Sbjct: 480 FYPQPILDTSHSAIGNIQQ 498 >gi|300918558|ref|ZP_07135148.1| NADH dehydrogenase subunit M [Escherichia coli MS 115-1] gi|300414293|gb|EFJ97603.1| NADH dehydrogenase subunit M [Escherichia coli MS 115-1] Length = 509 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 179/439 (40%), Positives = 272/439 (61%), Gaps = 16/439 (3%) Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 +S F M WI F S HL +DG+S+L+VVLT L +L SWK I++ + + Sbjct: 64 QSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLN 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTF 172 + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT Sbjct: 120 LMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQ 179 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFCSFAIKIPMFP 227 + ML AI+ + + ++ + + + P S ++Y + + FF +FA+K+P+ P Sbjct: 180 ASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVP 239 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Sbjct: 240 LHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIF 299 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ LF Sbjct: 300 YGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILC 359 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+GEF+++ FQ Sbjct: 360 GQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVP 419 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFG 466 + V+++FG+V +++YSL + + FG +K + Q+L +SLRE M+ + VL V G Sbjct: 420 VITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFMILLLVVLLVLLG 479 Query: 467 IYPVPIRDTFSVPLSSIIE 485 YP PI DT + +I + Sbjct: 480 FYPQPILDTSHSAIGNIQQ 498 >gi|283786345|ref|YP_003366210.1| NADH-quinone oxidoreductase chain M [Citrobacter rodentium ICC168] gi|282949799|emb|CBG89422.1| NADH-quinone oxidoreductase chain M [Citrobacter rodentium ICC168] Length = 509 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 194/509 (38%), Positives = 297/509 (58%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVWS- 53 M LP+L ++ PF+G F+ C + FGV AL + L +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 54 -----VFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 +G +Q WI F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQTEGIPQWQSEYQIEWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + K P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHHNATGVWTFNYEDLLKTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + Q+L +SLRE ++ Sbjct: 410 ILFGSYQIVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIANQELAGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT +S+I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQ 498 >gi|284794767|ref|YP_003412120.1| NADH dehydrogenase subunit 4 [Phaeoceros laevis] gi|254596087|gb|ACT75328.1| NADH dehydrogenase subunit 4 [Phaeoceros laevis] Length = 487 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 185/410 (45%), Positives = 254/410 (61%), Gaps = 9/410 (2%) Query: 43 INFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCIL 101 I F++S F W FD + FQ +E W Y + ++G+DGI + VLTTFL P I Sbjct: 47 ITFLYSPFFWIEFDNSTAKFQFVESIRWPPYSNINLYIGIDGIFLSSAVLTTFLIPIRIS 106 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI 161 W SI+ +EYMIAFL+ ES++I D LLF++FFE+ I MF +I Sbjct: 107 VGWSSIKSYKKEYMIAFLIRESLMIAVSRMSDFLLFHVFFESVSISMF-------RQRKI 159 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAI 221 AAY+ FLYT G +FML AI + ++ T+ + L + Q + IAFF SFA+ Sbjct: 160 QAAYQSFLYTLSGFVFMLLAISSISFQTGTTDLRILLTTESSEWR-QVLLRIAFFASFAV 218 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+PM P H LP A+V+APTAGSV AGI+ K+G YG +RF + +FP + +F I L Sbjct: 219 KVPMVPVHIRLPEAYVEAPTAGSVISAGILSKLGTYGSLRFSILMFPEVTFFFISFICTL 278 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 S+IAIIY L ++ Q D+KK+IAY S+AHM +VTIG+FS G+EG++ MLSHGLV Sbjct: 279 SVIAIIYTPLTTVRQIDLKKMIAYFSVAHMNFVTIGMFSLNIQGIEGSISPMLSHGLVLL 338 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 A CVG +YDR TR + YGGLV M + + + FT+ANM L G+S FIGEFL+++ Sbjct: 339 APPLCVGALYDRHKTRLVKYYGGLVSTMSIFCTISLFFTLANMSLLGSSSFIGEFLILIG 398 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 F+ ++ VA A+ G++L A Y LWLY VVFG K +++ DL+ RE Sbjct: 399 AFERNSLVATPAALGMILGAAYFLWLYNCVVFGNFKPNFLKKFSDLNRRE 448 >gi|157164877|ref|YP_001466110.1| NADH dehydrogenase subunit M [Campylobacter concisus 13826] gi|112800549|gb|EAT97893.1| NADH-quinone oxidoreductase subunit m (nadhdehydrogenase i subunit m) (ndh-1 subunit m) [Campylobacter concisus 13826] Length = 503 Score = 322 bits (826), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 195/431 (45%), Positives = 288/431 (66%), Gaps = 13/431 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 SY +G+D IS++L+VL+ F++ I + S N + +I+ L LES ++G F +LDM+ Sbjct: 68 SYFVGIDTISLVLIVLSAFMSFISI--AALSDDGNLKHLVISVLFLESTMMGVFSALDMI 125 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV---MCWEKK-- 190 LFY F+E SLIP+ IIG +G RIYAA KFF+YTF GS+FML AI+ +C++K Sbjct: 126 LFYSFWELSLIPLLYIIGAFGSKNRIYAAIKFFIYTFLGSVFMLVAIIFIGYLCYQKSGV 185 Query: 191 -TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + +++D Y + + Q W+++AFF +F +K P+FPFHTWLP AH QAPT GSV LA Sbjct: 186 FSFNLLDWYKLG-IGENAQIWLFLAFFFAFGVKTPLFPFHTWLPYAHGQAPTIGSVLLAS 244 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LKMG YG +RF LPLFP AS + + +++I IIYA+LV+ Q+D+K++IAYSSI+ Sbjct: 245 VLLKMGTYGFVRFSLPLFPDASLLLSGFVCVIAIIMIIYAALVAYAQSDMKQVIAYSSIS 304 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG + +GIFS G+ G++F M+SHG+VS ALF VGVIY+R HT++I +GGL M Sbjct: 305 HMGVIMLGIFSLNLIGLGGSIFLMISHGIVSGALFLLVGVIYERAHTKEICEFGGLAKVM 364 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P+YA+V + T+A++GLP T GF+GEFL ++ VF+ + A+L F +++ A+Y L LY+ Sbjct: 365 PKYALVFFIATLASIGLPLTIGFVGEFLSLLGVFKLNKLFALLGGFSIIVGAVYMLVLYK 424 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII---EN 486 +V FG K EK LKDL+ +E + P+ +L + GI P I + +II + Sbjct: 425 RVFFGECK-EKNLILKDLNFKELAALVPLCLLIIILGIAPNLILKPLEPSVQNIISKMQT 483 Query: 487 YTLKTGYSDSV 497 + +G D + Sbjct: 484 RAVNSGTKDKI 494 >gi|300903662|ref|ZP_07121578.1| NADH dehydrogenase subunit M [Escherichia coli MS 84-1] gi|301303264|ref|ZP_07209389.1| NADH dehydrogenase subunit M [Escherichia coli MS 124-1] gi|300404318|gb|EFJ87856.1| NADH dehydrogenase subunit M [Escherichia coli MS 84-1] gi|300841438|gb|EFK69198.1| NADH dehydrogenase subunit M [Escherichia coli MS 124-1] gi|315255211|gb|EFU35179.1| NADH dehydrogenase subunit M [Escherichia coli MS 85-1] Length = 509 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 197/517 (38%), Positives = 298/517 (57%), Gaps = 51/517 (9%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMC---------WEKKTSSIIDLYAMSKFPFSIQY 209 RI AA KFF+YT + ML AI+ + W +++ +MS ++Y Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNT-SMSS---GVEY 221 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 + + FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP Sbjct: 222 LLMLGFFIAFAVKMPVVPMHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPN 281 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 AS FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA Sbjct: 282 ASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGA 341 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 + QM++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT Sbjct: 342 VIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGT 401 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLS 448 F+GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +S Sbjct: 402 GNFVGEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMS 461 Query: 449 LRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 LRE M+ + VL V G YP PI DT + +I + Sbjct: 462 LRELFMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|70731267|ref|YP_261008.1| NADH dehydrogenase subunit M [Pseudomonas fluorescens Pf-5] gi|68345566|gb|AAY93172.1| NADH-quinone oxidoreductase, M subunit [Pseudomonas fluorescens Pf-5] Length = 510 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 195/504 (38%), Positives = 300/504 (59%), Gaps = 26/504 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + G + +AL T+ L++W+ + Sbjct: 1 MILPWLILI---PFIGGLLCWLGERFGATLPRW--IALLTMTLELALGLWLWAHGNYSFA 55 Query: 57 --KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G IE+ H WI+ F + HL +DG+S+L+++LT L +L SWK IQ + Sbjct: 56 PAPGADPTWAIEFKHVWIERFGINVHLALDGLSLLMILLTGLLGILSVLCSWKEIQRHVG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + + + V+G FL+LD+ +F+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLMWILGGVVGVFLALDLFMFFFFWEMMLVPMYFLIALWGHSSADGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYAM---SKFPFSIQYWMWIAFFCSFAI 221 FF++T + ML AI+ V+ T I YA +K + +Y + + FF +FA+ Sbjct: 176 FFIFTQASGLIMLVAILGLVLVNFNNTGVITFDYAQLLKTKMSTATEYILMLGFFIAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ PFH+WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L Sbjct: 236 KLPVVPFHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 LI I Y + ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++GA+ QML+HG+ ++ Sbjct: 296 GLIGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGAVIQMLAHGVSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+R HTRD+ GGL + + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILSGQLYERTHTRDMREMGGLWSRIAYLPAISLFFAAASLGLPGTGNFVGEFLILIG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F ++ + +A+ G+V ++YSL + + FG SK + V L + RE MV +AVL Sbjct: 416 TFVSAPWITAIATSGLVFGSVYSLIMIHRAYFGPSKSDAV--LHGMDARELIMVLGLAVL 473 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIE 485 ++ G+YP P DT + + + + Sbjct: 474 LIYIGVYPQPFLDTSAATMHGVQQ 497 >gi|302864913|ref|YP_003833550.1| proton-translocating NADH-quinone oxidoreductase subunit M [Micromonospora aurantiaca ATCC 27029] gi|302567772|gb|ADL43974.1| proton-translocating NADH-quinone oxidoreductase, chain M [Micromonospora aurantiaca ATCC 27029] Length = 510 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 191/504 (37%), Positives = 295/504 (58%), Gaps = 19/504 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRS 60 N PFLS++T P +G V+ + L R VA G S + + S+ +W F Sbjct: 3 NFPFLSVLTVAPLVGALVV---ALLPRSRPDLAKLVAFGWSLLVLVLSVVMWFAFSADGD 59 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE---YMI 116 FQ E Y WI ++ ++ VDGI++++++L L P IL+SW + + R Y Sbjct: 60 RFQFRESYPWIPNWGVNFTFEVDGIALVMLMLIAILVPLVILASWHDAEASKRSVPAYFA 119 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LVLE +IG F + D+ LFY+FFE L+PM+ +IG +GG +R YAA KFFLY+ G + Sbjct: 120 LLLVLECTMIGVFAAADVFLFYVFFEVMLVPMYFLIGSYGGHQRQYAAVKFFLYSLVGGL 179 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ--YWMWIAFFCSFAIKIPMFPFHTWLPN 234 FML A V+ W + D A+S+ F+ W+++ FF +FAIK P FPFHTWLP+ Sbjct: 180 FML-AAVIGLWVVGGKTF-DWQALSQAEFATDTARWLFLGFFVAFAIKAPFFPFHTWLPD 237 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 A AP + L G++ K+G +G +R+ LPLFP AS++FAP L +I IIYA+L+++ Sbjct: 238 AGGAAPAGAAALLVGVLDKVGTFGILRYCLPLFPEASRWFAPWALALGVIGIIYAALLAV 297 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q D+K+L++Y+SIAH G++ +GIF+ GA+ ML+HGL + LF VG++ R Sbjct: 298 GQNDLKRLVSYTSIAHFGFIGVGIFAFTTQAGTGAVLYMLNHGLATGLLFLVVGMLIARR 357 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 + I +GG +P A V+ +A++ LPGT+ F+ EFLV++ F + VAV+A+ Sbjct: 358 GSALISDFGGAGKLVPVLAGVLFFAGLASLALPGTAPFVSEFLVLIGTFTVNKPVAVIAT 417 Query: 415 FGVVLSALYSLWLYRKVVFGV---SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 G++L+A Y LW+ ++ G + E +DL+LRE+ +V P+ L V G YP P Sbjct: 418 LGIILAAAYVLWMVQRTTQGTLNPALTEVEGMRRDLTLREKVVVAPLIALIVLLGFYPKP 477 Query: 472 IRDTFSVPLSSIIENYTLKTGYSD 495 + D + + + +++ G SD Sbjct: 478 VTDVINPAVQATMQD----VGKSD 497 >gi|304921|gb|AAA53583.1| NADH ubiquinone oxidoreductase subunit [Escherichia coli str. K-12 substr. W3110] gi|416008|emb|CAA48372.1| NADH dehydrogenase I, subunit nuoM [Escherichia coli] Length = 509 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 195/513 (38%), Positives = 299/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLR+ Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRDV 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|227112316|ref|ZP_03825972.1| NADH dehydrogenase subunit M [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 511 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 181/439 (41%), Positives = 272/439 (61%), Gaps = 13/439 (2%) Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 G +Q Y WI F HL +DG+S+L+VVLT L IL SW IQ + + Sbjct: 59 GVPQWQSEFYVPWIPRFGIGIHLALDGLSLLMVVLTGLLGVLAILCSWNEIQRYQGFFHL 118 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYT 171 L + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT Sbjct: 119 NLLWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKGSDGKTRITAATKFFIYT 178 Query: 172 FFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMF 226 + ML AI+ + + ++ + + + K P S ++Y + + FF +FA+K+P+ Sbjct: 179 QASGLIMLIAILALVFVHHNATGVWTFNYEDLLKTPMSYGVEYLLMLGFFIAFAVKMPVV 238 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Sbjct: 239 PLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHAFAPIAMWLGVIGI 298 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 Y + ++ QTDIK+LIAY+S++HMG+V I I+SG + +GA+ QM++HGL ++ LF Sbjct: 299 FYGAWLAFKQTDIKRLIAYTSVSHMGFVMIAIYSGNQLAYQGAVIQMIAHGLSAAGLFIL 358 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 G +Y+RLHTRD+ GGL + + + F +A +G+PGT F+GEF+++ +Q Sbjct: 359 CGQLYERLHTRDMREMGGLWARLKYLPALSLFFAVATLGMPGTGNFVGEFMILFGSYQVV 418 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 + V+++FG+V +++YSL + ++ +G K + + LK +S RE +V + VL V G Sbjct: 419 PVITVISTFGLVFASVYSLIMIQRAYYGTPKSD--EPLKSMSFRELSIVMLLVVLLVLLG 476 Query: 467 IYPVPIRDTFSVPLSSIIE 485 +YP PI DT S +S+I + Sbjct: 477 VYPQPILDTSSAAMSNIQQ 495 >gi|162452495|ref|YP_001614862.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|161163077|emb|CAN94382.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 671 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 198/505 (39%), Positives = 308/505 (60%), Gaps = 21/505 (4%) Query: 5 FLSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 L+++ LPF+G +LF L R G L + F+ SL++ +V F Sbjct: 108 LLNVLIGLPFVGAAAVLFMPRQLLSLLR----GFTLAVLGAGFLASLWLLTVPMTVGWHF 163 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q I+ WI +H+ +DGIS+ LV+LTTF+ P +S+ SI+ +E L L Sbjct: 164 QSIK--EWIPALGIRWHVAIDGISLWLVLLTTFIAPIAAYASFGSIKNRIKELCFCLLFL 221 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 + ++GAF++LD+ LF++F+E L+PMFV+IG+WGG E+I AA K F+YT GS+ ML Sbjct: 222 QGAMLGAFVALDLFLFFLFWELMLVPMFVMIGIWGGVEKIKAAIKLFVYTMAGSMLMLAG 281 Query: 182 IVVMCW--EKKTSS-IIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 IV + W +K T + D A+S+ P Q + AF +F IK+PM+P HTWLP+AH Sbjct: 282 IVYLVWANQKLTGAYTFDYLALSRVVLPRGAQMLCFWAFSIAFFIKVPMWPVHTWLPDAH 341 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA-IIYASLVSMV 295 VQAPT GSV LA +MLK+G Y +RF + LFP + A + ++++ +IY +LV+ Sbjct: 342 VQAPTGGSVILAAVMLKIGTYAYLRFSMGLFPGPASSLAANLAGIAILGGVIYGALVAWK 401 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q+D+K+L+AYSS+AH+GYV +G+F SG++GA+ QM++HG+ + ALF VGVIYDR H Sbjct: 402 QSDVKRLVAYSSVAHLGYVMLGLFGVTPSGIQGAVIQMVNHGVSTGALFLLVGVIYDRRH 461 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN------SNTV 409 TR++ +GGL MP YA + ++ T A++G+PGT+GFIGEF++IM + + S Sbjct: 462 TREVSEFGGLAKVMPVYATLFLIVTFASVGVPGTNGFIGEFMIIMGTYASERLGTFSGIH 521 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + A+ GV+L+A+Y L + +K+ FG K + L D++ RE + P+ ++ G++P Sbjct: 522 TIGAAAGVILAAVYMLSVVQKMFFGPLTNPKNKHLPDVTPREGLALAPLILMIFVIGLFP 581 Query: 470 VPIRDTFSVPLSSIIENYTLKTGYS 494 D + S + + +G + Sbjct: 582 AIFLDRMKESVLSTYNQFKVVSGQA 606 >gi|51596895|ref|YP_071086.1| NADH dehydrogenase subunit M [Yersinia pseudotuberculosis IP 32953] gi|51590177|emb|CAH21814.1| NADH dehydrogenase I chain M [Yersinia pseudotuberculosis IP 32953] Length = 510 Score = 322 bits (825), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 195/515 (37%), Positives = 301/515 (58%), Gaps = 50/515 (9%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG------VALGISTINFIFSLFVWSV 54 M LP+L ++ PF+G + C + FG +AL + + SL++W Sbjct: 1 MLLPWLILI---PFIGGLL--------CWQLERFGTKVPRWIALIAMGLTLVLSLYLWG- 48 Query: 55 FDKGRSSF-------QMIEYYH--WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW 104 +G S Q YY+ WI F +HL +DG+S+L+VVLT L IL SW Sbjct: 49 --QGNYSLMNPTGIPQWQTYYNVPWIPRFGIRFHLALDGLSLLMVVLTGLLGVLAILCSW 106 Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSE 159 + IQ + + L + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 107 REIQRYQGFFHLNLLWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKT 166 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIVVMC---------WEKKTSSIIDLYAMSKFPFSIQYW 210 RI AA KFF+YT + ML AI+ + W +++ MS+ +++Y Sbjct: 167 RITAATKFFIYTQASGLIMLIAILGLVFVHFNATGIWTFNYEDLLNT-PMSR---NVEYL 222 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 + + FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP A Sbjct: 223 LMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNA 282 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 S FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ Sbjct: 283 SHEFAPIAMWLGVIGIFYGAWMAFCQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAV 342 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 QM++HGL ++ +F G +Y+RLHTRD+ GGL + + + F +A +G+PGT Sbjct: 343 IQMIAHGLSAAGMFIICGQLYERLHTRDMRQMGGLWGRIKYLPALSLFFAVATLGMPGTG 402 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 F+GEF+++ FQ + + V+A+FG+V +++YSL + ++ +G K E + L ++ R Sbjct: 403 NFVGEFMILFGSFQVVSVITVIATFGLVFASVYSLIMMQRAYYGTPKSE--EALPGMTAR 460 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 E +V + VL V G+YP PI DT +S++ + Sbjct: 461 ELSIVLLLVVLLVLLGVYPQPILDTSHAAMSNVQQ 495 >gi|255533951|ref|YP_003094323.1| proton-translocating NADH-quinone oxidoreductase subunit M [Pedobacter heparinus DSM 2366] gi|255346935|gb|ACU06261.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pedobacter heparinus DSM 2366] Length = 488 Score = 322 bits (825), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 167/434 (38%), Positives = 263/434 (60%), Gaps = 3/434 (0%) Query: 59 RSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 +S Q + WI D S+H GVDGIS++ ++LT L P ILS+++ ++ + Sbjct: 51 DASTQFMVNCPWIKDLGISFHAGVDGISMITILLTNVLVPLIILSAYQHQYKSANAFFAL 110 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L ++S ++ F ++D LFYI +EA+LIP++ I +WGG +RI KFF+YT GS+F Sbjct: 111 ILFMQSGLLVVFTAMDAFLFYIGWEAALIPIYFICAIWGGKDRIRVNMKFFVYTIAGSLF 170 Query: 178 MLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML I+ + + ++ I + + Q W++ AFF +FAIK+P+FPFHTW P+ + Sbjct: 171 MLLGIIYLYLQNPANNFDIQAFYSLNLDSTQQAWIFWAFFVAFAIKMPIFPFHTWQPDTY 230 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +AP AG++ L+GIMLKMG YG IR+LLP+ P Q + + LS+I ++YASL++ Q Sbjct: 231 TEAPAAGTMLLSGIMLKMGIYGVIRWLLPVVPAGVQEWGQLAIILSVIGVVYASLIAFTQ 290 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D K+L+AYSSI H+G ++ GIF+ G++GAM QMLSHG+ LFF + +I R+HT Sbjct: 291 KDAKRLVAYSSIGHVGLISAGIFALNVQGMQGAMIQMLSHGINVIGLFFVLDIIASRVHT 350 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 I GG+ P+ A+V ++ + + LPGT+GFIGEFL+++ ++Q + AV A Sbjct: 351 YKIAELGGIAKQAPKLAIVFLIIVLGTVALPGTNGFIGEFLLLIGIYQYNLWAAVFAGLT 410 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 ++ A+Y +Y+ ++ G + E D+ E+ ++Y I L + G+YP PI Sbjct: 411 IIFGAVYMFRMYQNIMLGKTN-ELTIGFTDIKGSEQVVLYIICALVIVLGVYPKPILQLS 469 Query: 477 SVPLSSIIENYTLK 490 + +IE T K Sbjct: 470 EASVQHLIEQVTQK 483 >gi|12689|emb|CAA23995.1| URF 4 [Emericella nidulans] Length = 488 Score = 322 bits (825), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 185/454 (40%), Positives = 284/454 (62%), Gaps = 5/454 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL + IN I SL ++ +FD +Q IE ++ I++F Y LGVDG+SI V+LTT + Sbjct: 35 IALLTTIINLIISLVMFILFDFSSKQYQFIEEHYEINHFDIY-LGVDGLSIYFVLLTTII 93 Query: 96 TPFCILSSWKSIQ-ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 P ILS+W SI+ +N +++ L+LE++++ FL LD+LLFYIFFE+ L P+F++IG+ Sbjct: 94 MPIAILSNWNSIESKNVLSFIVIMLLLETLLLAVFLVLDILLFYIFFESILPPLFLLIGL 153 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 +G S ++ A++ FLYT GS+FML +I+ + TS D + F + Q +++ Sbjct: 154 FGSSNKVRASFYLFLYTLLGSLFMLLSIIAITSIMGTSDF-DALTKANFNYITQIFLFYG 212 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 F +F +K P+ +TWL AHV++P +GS+ LAGI+LK+ YG R +LPL P AS + Sbjct: 213 IFIAFRVKTPVMFLNTWLLKAHVESPLSGSIILAGIVLKLSLYGIFRLILPLLPKASINY 272 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 +I+ + +I I+YAS ++ DIK+LIAYSS++H IG FS G+EG++ L Sbjct: 273 TYIIYVIGVITILYASFSTLRTIDIKELIAYSSVSHAAVYLIGAFSNTIQGIEGSIALGL 332 Query: 335 SHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +HG VSS LF C G++YDR + R I Y G+ MP ++V+ + + N G P T FI Sbjct: 333 AHGFVSSGLFICAGGILYDRSNDRLITYYRGMAQIMPIFSVLFFILALGNSGTPLTLNFI 392 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRER 452 GEF+ + VF+ + VLAS +V SA Y++++Y ++VFG S ++ + D++ RE Sbjct: 393 GEFMSLYGVFERMPILGVLASTSIVFSAAYTIFMYNRIVFGGSYSIYFRENIGDVTRREF 452 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 M+ +LTV FGIYP PI D +S +I N Sbjct: 453 IMLLVFVILTVLFGIYPAPILDGLHYSVSYLIYN 486 >gi|292488832|ref|YP_003531719.1| NADH dehydrogenase I subunit M [Erwinia amylovora CFBP1430] gi|291554266|emb|CBA21577.1| NADH dehydrogenase I chain M [Erwinia amylovora CFBP1430] Length = 506 Score = 322 bits (825), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 191/504 (37%), Positives = 303/504 (60%), Gaps = 22/504 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFD--- 56 M LP+L I LPF+G + G + +A+G+ T+ L++ + Sbjct: 1 MLLPWLII---LPFVGGLLCWQGERFGAKLPRWIALIAMGL-TLALSLQLWLQGGYSLSQ 56 Query: 57 -KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 +G +Q WI F ++HL +DG+S+L+VVLT L IL SW I++ + Sbjct: 57 AEGGPQWQAQFSVPWIPRFGIAFHLALDGLSLLMVVLTGLLGVMAILCSWNEIEKWQGFF 116 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFL 169 + L + VIG FL++D+ LF+ F+E L+PM+ +I +WG G RI AA KFF+ Sbjct: 117 HLNLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFI 176 Query: 170 YTFFGSIFMLFAIVVMCWEKKTSSIIDLYA---MSKFPFS--IQYWMWIAFFCSFAIKIP 224 YT + ML AI+ + + ++ + ++ + K P S ++Y + + FF +FA+K+P Sbjct: 177 YTQASGLVMLIAILALVFVHYNATGVWTFSYEQLLKTPMSHGVEYLLMLGFFIAFAVKMP 236 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP A+ FAP+ +L +I Sbjct: 237 VVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPDATAEFAPIAMWLGMI 296 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 I Y + ++ Q DIK+LIAY+SI+HMG+V I I++G + +GA+ QM++HGL ++ALF Sbjct: 297 GIFYGAWMAFSQYDIKRLIAYTSISHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAALF 356 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G +Y+RLHTRD+ GGL + + + F +AN+G+PGT F+GEF+++ F Sbjct: 357 ILCGQLYERLHTRDMRQMGGLWSRIKWLPGLSLFFAVANLGMPGTGNFVGEFMILTGSFH 416 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + + ++A+FG+V +++YSL + ++ +G +K E L+ +S RE M+ + +L V Sbjct: 417 SVPLIIIIATFGLVFASVYSLVMMQRAYYGPAKSET--PLRGMSAREFLMIMVLVLLLVL 474 Query: 465 FGIYPVPIRDTFSVPLSSIIENYT 488 G+YP PI DT +S+I + +T Sbjct: 475 LGVYPQPILDTSHAAMSNIQQWFT 498 >gi|295098084|emb|CBK87174.1| NADH dehydrogenase subunit M [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 509 Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 192/509 (37%), Positives = 295/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVAL----GISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKMPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F + HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGLPQWQSEFILPWIPRFGITIHLAIDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + K P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEDLLKTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ F T+ V+++FG+V +++YSL + + FG +K E Q+L +SLRE ++ Sbjct: 410 ILFGSFNVVPTITVISTFGLVFASVYSLAMLHRAYFGKAKSEIAAQELPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT + +I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMGNIQQ 498 >gi|92115236|ref|YP_575164.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chromohalobacter salexigens DSM 3043] gi|91798326|gb|ABE60465.1| NADH dehydrogenase subunit M [Chromohalobacter salexigens DSM 3043] Length = 513 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 186/504 (36%), Positives = 290/504 (57%), Gaps = 30/504 (5%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD------KGRSSFQM 64 +PF+G + + LG + +ALG + L VW D +G +++ + Sbjct: 8 LIPFIGGLLCWQAERLGEQPPRW--IALGTMLLELALVLGVWWQGDFALNTAQGAAAWAI 65 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 WI F HL +DG+S++++ LT L ++ SW I + + L + Sbjct: 66 EWRADWIPRFGIEVHLALDGLSLIMIALTGLLGVLAVVCSWHEIARRIGFFHLNLLWILG 125 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFM 178 V+G FL++D+ LF+ F+E L+PM+ +I +WG G+ RI AA KFF+YT + M Sbjct: 126 GVVGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHSGSTGNTRIQAATKFFIYTQASGLLM 185 Query: 179 LFAIVVMCWEKKTSS--------IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 L AI+ + + ++ + A ++ + +W+ + FF +FA+K+P+ P H Sbjct: 186 LVAILGLVFAHHAATGEYSFSYEALRHTAQNELSDGMAWWLMLGFFIAFAVKMPVVPLHG 245 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP ASQ FAPV L ++ I Y + Sbjct: 246 WLPDAHAQAPTAGSVDLAGILLKTAAYGMLRFALPLFPEASQAFAPVAMGLGILGIFYGA 305 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 +++ Q D+K+LIAYSSI+HMG+V IGI+SG + ++G + M++H +S LF G + Sbjct: 306 ILACGQHDLKRLIAYSSISHMGFVLIGIYSGTELALQGVVVLMVAHAFSASGLFILSGQL 365 Query: 351 YDRLHTRDIFAYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 Y+RLHTRD+ GGL + +P +A + F A+MG+PGT+ F+GEFLV+ F+ Sbjct: 366 YERLHTRDMRLMGGLWGRIKGLPGFA---LCFVAASMGMPGTANFVGEFLVLFGSFEAWP 422 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 V V+AS G VL+A+YSL++ ++V FG +K E L L RE M+ + L ++ G+ Sbjct: 423 WVVVIASVGFVLAAIYSLFIMQRVYFGPAKEET--PLGGLDRREGVMMLGLLALVLWVGL 480 Query: 468 YPVPIRDTFSVPLSSIIENYTLKT 491 YP P+ T + ++ TL+ Sbjct: 481 YPAPLLSTSEAAMQNVERIMTLEQ 504 >gi|91200374|emb|CAJ73420.1| strongly similar to NADH dehydrogenase I chain M [Candidatus Kuenenia stuttgartiensis] Length = 545 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 170/445 (38%), Positives = 272/445 (61%), Gaps = 11/445 (2%) Query: 59 RSSFQMIEYY-HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 R+ +IE WI F ++HL +DG+S++LV LT FL +++SWK I E + Sbjct: 58 RAPVWLIELNTEWIPQFGINFHLALDGLSLILVALTIFLGIISVITSWKEITERIGFFHF 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L + + + G FL+LD+ LFY F+E LIPM+ +IG+WG RIYAA+KFFL+T + Sbjct: 118 NILWILAGISGVFLALDLFLFYFFWEVMLIPMYFLIGIWGHENRIYAAFKFFLFTQASGL 177 Query: 177 FMLFAIVVMCW-EKKTSSI-----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 M AI+V+ + K + I + L P ++ + + F +F +K+P PFH Sbjct: 178 LMFLAILVLYFIHGKATGIYTFDYMQLLGTILSP-TVSFILMCGFLIAFLVKLPAVPFHA 236 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH +APTAGSV LAG++LK G YG +RF++PLFP ++ +P F I I+Y + Sbjct: 237 WLPDAHTEAPTAGSVILAGLLLKTGAYGLLRFVIPLFPSSAAAISPYAMFFGAIGILYGA 296 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 ++ QTD K+L+AY+S++HMG++ IG F+ +G + Q+L+HG+ + ALF G + Sbjct: 297 KLAFAQTDFKRLVAYTSVSHMGFILIGAFAFNVLAFQGVVMQILAHGITTGALFVLAGTM 356 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 +RLH RDI GGL +PR A V ++F++A++GLPG FI EFL++ +Q + + Sbjct: 357 QERLHIRDINKMGGLWQLVPRMAGVGLLFSLASLGLPGLGNFIAEFLILAGSYQANAGLT 416 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 + A+FG++ S +Y+L + +KV +G K EK ++ D +RE M+ + ++ + GIYP Sbjct: 417 IFAAFGLIASTIYALRIMQKVFYG--KREKEWKISDFGIREMIMMGAMIIVIAWLGIYPQ 474 Query: 471 PIRDTFSVPLSSIIENYTLKTGYSD 495 T + +II+N+ +T ++ Sbjct: 475 TFLTTTKYSIENIIQNFKSQTSNTE 499 >gi|330465214|ref|YP_004402957.1| proton-translocating NADH-quinone oxidoreductase subunit M [Verrucosispora maris AB-18-032] gi|328808185|gb|AEB42357.1| proton-translocating NADH-quinone oxidoreductase, chain M [Verrucosispora maris AB-18-032] Length = 507 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 184/495 (37%), Positives = 293/495 (59%), Gaps = 15/495 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRS 60 + PFLS++T P +G V+ + L R + VALG S + S+ +W + Sbjct: 3 DFPFLSVLTVAPLVGAVVV---ALLPRSRPTLAKQVALGWSLLVLALSIVMWVTWQVDGQ 59 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE---YMI 116 FQ E Y WI ++ ++ DGI++++++L L P IL+SW + + R Y Sbjct: 60 RFQFRESYPWIPNWGVNFTFAADGIALVMLMLIAVLVPLVILASWHDAESSKRSVPAYFA 119 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LVLE ++G F + D+ LFY+FFE L+PM+ +IG +GG +R YAA KFFLY+ G + Sbjct: 120 LLLVLECTMLGVFAAADVFLFYVFFEVMLVPMYFLIGSYGGHQRQYAAVKFFLYSLVGGL 179 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPN 234 FML A V+ W + D A+S+ S + W+++ FF +FAIK P FPFHTWLP+ Sbjct: 180 FML-AAVIGLWVVGGKTF-DWVALSEVDISTGAERWLFLGFFIAFAIKAPFFPFHTWLPD 237 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 A AP + L G++ K+G +G +R+ LPLFP A+Q+FAP +++I IIYA+L+++ Sbjct: 238 AGGAAPAGAAALLVGVLDKVGTFGILRYCLPLFPDAAQWFAPWALAIAVIGIIYAALLAV 297 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q D+K+L++Y+SIAH G++ +GIF+ GA+ M++HGL + LF VG++ R Sbjct: 298 GQNDLKRLVSYTSIAHFGFIGVGIFAFTTQAGTGAVLYMVNHGLATGLLFLVVGMLVARR 357 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 + I +GG +P A V+ +A++ LPGT+ F+ EFLV++ F + VAV+A+ Sbjct: 358 GSALISDFGGAGKLVPVLAGVLFFAGLASLALPGTAPFVSEFLVLIGTFTVNKPVAVIAT 417 Query: 415 FGVVLSALYSLWLYRKVVFGV---SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 G++L+A Y LW+ ++ G + E +DL+LRE+ +V P+ L V G YP P Sbjct: 418 LGIILAAAYVLWMVQRTTQGTLNPALTEIDGMKRDLNLREKFVVAPLIALIVLLGFYPKP 477 Query: 472 IRDTFSVPLSSIIEN 486 + D + + + +E+ Sbjct: 478 VTDVINPAIQATMED 492 >gi|227326155|ref|ZP_03830179.1| NADH dehydrogenase subunit M [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 443 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 179/427 (41%), Positives = 269/427 (62%), Gaps = 13/427 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F HL +DG+S+L+VVLT L IL SW IQ + + L + VIG Sbjct: 3 WIPRFGIGIHLALDGLSLLMVVLTGLLGVLAILCSWNEIQRYQGFFHLNLLWILGGVIGV 62 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 63 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKGSDGKTRITAATKFFIYTQSSGLIMLIAIL 122 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ + + + K P S ++Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 123 ALVFVHHNATGVWTFNYEDLLKTPMSYGVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 182 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ QTD Sbjct: 183 APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHAFAPIAMWLGVIGIFYGAWLAFKQTD 242 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I+SG + +GA+ QM++HGL ++ LF G +Y+RLHTRD Sbjct: 243 IKRLIAYTSVSHMGFVMIAIYSGNQLAYQGAVIQMIAHGLSAAGLFILCGQLYERLHTRD 302 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ +Q + V+++FG+V Sbjct: 303 MREMGGLWSRLKFLPALSLFFAVATLGMPGTGNFVGEFMILFGSYQVVPVITVISTFGLV 362 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G K + + LK +SLRE +V + VL V G+YP PI DT S Sbjct: 363 FASVYSLIMIQRAYYGTPKSD--EPLKSMSLRELSIVMLLVVLLVLLGVYPQPILDTSSA 420 Query: 479 PLSSIIE 485 +S+I + Sbjct: 421 AMSNIQQ 427 >gi|109156420|ref|YP_654307.1| NADH dehydrogenase subunit 4 [Ricordea florida] gi|108515290|gb|ABF93387.1| NADH dehydrogenase subunit 4 [Ricordea florida] Length = 491 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 198/460 (43%), Positives = 286/460 (62%), Gaps = 12/460 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F F+G+ ++ + G+ + L + + + +W FD FQ+I Sbjct: 8 LSLVFFFLFVGIINVMGTPREARGKLK--RITLEWCLVILVSAFVLWGAFDS-EGQFQII 64 Query: 66 EYYHWID------YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + WI + L +DGIS+ +LT L P C+L SWKSI+ F+E+++ L Sbjct: 65 DQIGWIVSPTLNFQWGPVILALDGISLFFFILTALLIPICVLISWKSIKYLFKEFLLCLL 124 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFM 178 LE ++IG FL LD+LLFYI FE LIPMF++IGVWG E++ A+Y FF YTF GS+FM Sbjct: 125 FLEVLLIGVFLVLDLLLFYILFEGILIPMFLLIGVWGSREEKVRASYYFFFYTFAGSVFM 184 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L +I + T+ L + KFPF Q W+ + F SFA+KIP PFH WLP AHV+ Sbjct: 185 LLSIFQLYRNTGTTDYQILLNI-KFPFCTQKWILVGCFLSFAVKIPQIPFHIWLPQAHVE 243 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP +GSV LAGI+LK+GGYG +RF L P AS+Y AP+I L ++AIIY SL++ Q D Sbjct: 244 APVSGSVILAGILLKLGGYGFLRFSWVLLPAASEYLAPLIVMLGVVAIIYGSLITCRQVD 303 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+LIAYSS+AHMG V +G+F+ G+ A+F ML+HG VSSALF + +Y+R HTR Sbjct: 304 LKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFMMLAHGFVSSALFIAITYLYERHHTRL 363 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I Y G+ MP + +MMV ++ NMG+P + F+GEF +++ + + + VL + G+V Sbjct: 364 IKYYRGVTLTMPIFVTIMMVLSLTNMGIPLSCNFVGEFFSLLAAVEYNWGLGVLVTSGMV 423 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 SA YSL+LY ++ FG S + +DL+ RE ++ + Sbjct: 424 WSAAYSLYLYNRISFGGS-ANYLLFTRDLNRRELLAIFSL 462 >gi|333001421|gb|EGK20989.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Shigella flexneri VA-6] Length = 509 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 195/513 (38%), Positives = 298/513 (58%), Gaps = 43/513 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV------ALGISTINFIFSLFVW-- 52 M LP+L ++ PF+G F+ C + FGV AL + SL +W Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALSLQLWLQ 49 Query: 53 --------SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 + + +S F M WI F S HL +DG+S+L+VVLT L +L S Sbjct: 50 GGYSLTQSAGIPQWQSEFDM----PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GS 158 WK I++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 106 WKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGK 165 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWI 213 RI A KFF+YT + ML AI+ + + ++ + + + P S ++Y + + Sbjct: 166 TRITVATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLML 225 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 226 GFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAE 285 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM Sbjct: 286 FAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQM 345 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++ LF G +Y+R+HTRD+ GGL M + + F +A +G+PGT F+ Sbjct: 346 IAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFV 405 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRER 452 GEF+++ FQ + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 406 GEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLREL 465 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 M+ + VL V G YP PI DT + +I + Sbjct: 466 FMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQ 498 >gi|22125536|ref|NP_668959.1| NADH dehydrogenase subunit M [Yersinia pestis KIM 10] gi|45442144|ref|NP_993683.1| NADH dehydrogenase subunit M [Yersinia pestis biovar Microtus str. 91001] gi|108808031|ref|YP_651947.1| NADH dehydrogenase subunit M [Yersinia pestis Antiqua] gi|108812301|ref|YP_648068.1| NADH dehydrogenase subunit M [Yersinia pestis Nepal516] gi|145599234|ref|YP_001163310.1| NADH dehydrogenase subunit M [Yersinia pestis Pestoides F] gi|149365550|ref|ZP_01887585.1| NADH dehydrogenase I chain M [Yersinia pestis CA88-4125] gi|162419241|ref|YP_001606294.1| NADH dehydrogenase subunit M [Yersinia pestis Angola] gi|165925608|ref|ZP_02221440.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165937643|ref|ZP_02226205.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008057|ref|ZP_02228955.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166213830|ref|ZP_02239865.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399063|ref|ZP_02304587.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422273|ref|ZP_02314026.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424671|ref|ZP_02316424.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023812|ref|YP_001720317.1| NADH dehydrogenase subunit M [Yersinia pseudotuberculosis YPIII] gi|186895976|ref|YP_001873088.1| NADH dehydrogenase subunit M [Yersinia pseudotuberculosis PB1/+] gi|218929630|ref|YP_002347505.1| NADH dehydrogenase subunit M [Yersinia pestis CO92] gi|229838086|ref|ZP_04458245.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895285|ref|ZP_04510459.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Yersinia pestis Pestoides A] gi|229898646|ref|ZP_04513791.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Yersinia pestis biovar Orientalis str. India 195] gi|229902645|ref|ZP_04517762.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Yersinia pestis Nepal516] gi|270490174|ref|ZP_06207248.1| NADH dehydrogenase subunit M [Yersinia pestis KIM D27] gi|294504358|ref|YP_003568420.1| NADH dehydrogenase subunit M [Yersinia pestis Z176003] gi|21958436|gb|AAM85210.1|AE013767_7 NADH dehydrogenase I chain M [Yersinia pestis KIM 10] gi|45437008|gb|AAS62560.1| NADH dehydrogenase I chain M [Yersinia pestis biovar Microtus str. 91001] gi|108775949|gb|ABG18468.1| NADH dehydrogenase I chain M [Yersinia pestis Nepal516] gi|108779944|gb|ABG14002.1| NADH dehydrogenase I chain M [Yersinia pestis Antiqua] gi|115348241|emb|CAL21169.1| NADH dehydrogenase I chain M [Yersinia pestis CO92] gi|145210930|gb|ABP40337.1| NADH dehydrogenase I chain M [Yersinia pestis Pestoides F] gi|149291963|gb|EDM42037.1| NADH dehydrogenase I chain M [Yersinia pestis CA88-4125] gi|162352056|gb|ABX86004.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis Angola] gi|165914393|gb|EDR33008.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922717|gb|EDR39868.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992439|gb|EDR44740.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166205004|gb|EDR49484.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958779|gb|EDR55800.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051567|gb|EDR62975.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056553|gb|EDR66322.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750346|gb|ACA67864.1| proton-translocating NADH-quinone oxidoreductase, chain M [Yersinia pseudotuberculosis YPIII] gi|186699002|gb|ACC89631.1| proton-translocating NADH-quinone oxidoreductase, chain M [Yersinia pseudotuberculosis PB1/+] gi|229680092|gb|EEO76191.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Yersinia pestis Nepal516] gi|229688194|gb|EEO80265.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Yersinia pestis biovar Orientalis str. India 195] gi|229694452|gb|EEO84499.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701771|gb|EEO89796.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Yersinia pestis Pestoides A] gi|262362653|gb|ACY59374.1| NADH dehydrogenase subunit M [Yersinia pestis D106004] gi|262366282|gb|ACY62839.1| NADH dehydrogenase subunit M [Yersinia pestis D182038] gi|270338678|gb|EFA49455.1| NADH dehydrogenase subunit M [Yersinia pestis KIM D27] gi|294354817|gb|ADE65158.1| NADH dehydrogenase subunit M [Yersinia pestis Z176003] gi|320014618|gb|ADV98189.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 510 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 195/515 (37%), Positives = 300/515 (58%), Gaps = 50/515 (9%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG------VALGISTINFIFSLFVWSV 54 M LP+L ++ PF+G + C + FG +AL + + SL++W Sbjct: 1 MLLPWLILI---PFIGGLL--------CWQLERFGTKVPRWIALIAMGLTLVLSLYLWG- 48 Query: 55 FDKGRSSF-------QMIEYYH--WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW 104 +G S Q YY+ WI F +HL +DG+S+L+VVLT L IL SW Sbjct: 49 --QGNYSLMNPTGIPQWQTYYNVPWIPRFGIRFHLALDGLSLLMVVLTGLLGVLAILCSW 106 Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSE 159 + IQ + + L + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 107 REIQRYQGFFHLNLLWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKT 166 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIVVMC---------WEKKTSSIIDLYAMSKFPFSIQYW 210 RI AA KFF+YT + ML AI+ + W +++ MS+ +++Y Sbjct: 167 RITAATKFFIYTQASGLIMLIAILGLVFVHFNATGIWTFNYEDLLNT-PMSR---NVEYL 222 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 + + FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP A Sbjct: 223 LMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNA 282 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 S FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ Sbjct: 283 SHEFAPIAMWLGVIGIFYGAWMAFCQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAV 342 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 QM++HGL ++ +F G +Y+RLHTRD+ GGL + + + F +A +G+PGT Sbjct: 343 IQMIAHGLSAAGMFIICGQLYERLHTRDMRQMGGLWGRIKYLPALSLFFAVATLGMPGTG 402 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 F+GEF+++ FQ + V+A+FG+V +++YSL + ++ +G K E + L ++ R Sbjct: 403 NFVGEFMILFGSFQVVPVITVIATFGLVFASVYSLIMMQRAYYGTPKSE--EALPGMTAR 460 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 E +V + VL V G+YP PI DT +S++ + Sbjct: 461 ELSIVLLLVVLLVLLGVYPQPILDTSHAAMSNVQQ 495 >gi|153948476|ref|YP_001400443.1| NADH dehydrogenase subunit M [Yersinia pseudotuberculosis IP 31758] gi|152959971|gb|ABS47432.1| NADH-quinone oxidoreductase, M subunit [Yersinia pseudotuberculosis IP 31758] Length = 510 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 195/515 (37%), Positives = 300/515 (58%), Gaps = 50/515 (9%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG------VALGISTINFIFSLFVWSV 54 M LP+L ++ PF+G + C + FG +AL + + SL++W Sbjct: 1 MLLPWLILI---PFIGGLL--------CWQLERFGTKVPRWIALIAMGLTLVLSLYLWG- 48 Query: 55 FDKGRSSF-------QMIEYYH--WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW 104 +G S Q YY+ WI F +HL +DG+S+L+VVLT L IL SW Sbjct: 49 --QGNYSLMNPAGIPQWQTYYNVPWIPRFGIRFHLALDGLSLLMVVLTGLLGVLAILCSW 106 Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSE 159 + IQ + + L + VIG FL++DM LF+ F+E L+PM+ +I +WG G Sbjct: 107 REIQRYQGFFHLNLLWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKT 166 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIVVMC---------WEKKTSSIIDLYAMSKFPFSIQYW 210 RI AA KFF+YT + ML AI+ + W +++ MS+ +++Y Sbjct: 167 RITAATKFFIYTQASGLIMLIAILGLVFVHFNATGIWTFNYEDLLNT-PMSR---NVEYL 222 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 + + FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP A Sbjct: 223 LMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNA 282 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 S FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ Sbjct: 283 SHEFAPIAMWLGVIGIFYGAWMAFCQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAV 342 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 QM++HGL ++ +F G +Y+RLHTRD+ GGL + + + F +A +G+PGT Sbjct: 343 IQMIAHGLSAAGMFIICGQLYERLHTRDMRQMGGLWGRIKYLPALSLFFAVATLGMPGTG 402 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 F+GEF+++ FQ + V+A+FG+V +++YSL + ++ +G K E + L ++ R Sbjct: 403 NFVGEFMILFGSFQVVPVITVIATFGLVFASVYSLIMMQRAYYGTPKSE--EALPGMTAR 460 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 E +V + VL V G+YP PI DT +S++ + Sbjct: 461 ELSIVLLLVVLLVLLGVYPQPILDTSHAAMSNVQQ 495 >gi|238794596|ref|ZP_04638203.1| NADH-quinone oxidoreductase subunit M [Yersinia intermedia ATCC 29909] gi|238726082|gb|EEQ17629.1| NADH-quinone oxidoreductase subunit M [Yersinia intermedia ATCC 29909] Length = 507 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 174/427 (40%), Positives = 268/427 (62%), Gaps = 13/427 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F +HL +DG+S+L+VVLT L IL SW+ IQ N + + L + VIG Sbjct: 71 WIPRFGIEFHLALDGLSLLMVVLTGLLGVLAILCSWREIQRNQGFFYLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIAAATKFFIYTQASGLIMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I + + P S ++Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHYKATGIWTFNYEDLLNTPMSHNVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHEFAPIAMWLGVIGIFYGAWMAFCQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ FQ + V+++FG+V Sbjct: 371 MRQMGGLWGRIKYLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G K ++ L +S RE ++ + VL V G+YP PI DT Sbjct: 431 FASVYSLIMMQRAYYGAPKSQEA--LPGMSARELSIILLLVVLLVLLGVYPQPILDTSHA 488 Query: 479 PLSSIIE 485 +S++ + Sbjct: 489 AMSNVQQ 495 >gi|11466208|ref|NP_066531.1| NADH dehydrogenase subunit 4 [Naegleria gruberi] gi|10444243|gb|AAG17809.1|AF288092_34 NADH dehydrogenase subunit 4 [Naegleria gruberi] Length = 474 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 185/436 (42%), Positives = 281/436 (64%), Gaps = 10/436 (2%) Query: 43 INFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILS 102 I FIF++ VW +FD SFQ I+Y + +Y S+ G+DGISI + L+TFL P C+L Sbjct: 25 IFFIFNI-VWVLFDSFEPSFQFIQYINLFEY--SFLFGIDGISIFFIYLSTFLIPLCLLF 81 Query: 103 SWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-G 157 S+ ++++ + Y + ++I F +LD+L+FYI FE LIP FV+IGV Sbjct: 82 SFYNMKQKGVSEVKMYQSFLFLTLFLLIFVFSALDILVFYIMFEIILIPFFVLIGVSSYR 141 Query: 158 SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFC 217 RI+A+Y FF YT GS ML +I + TS+I ++ +++ F + +W+ FF Sbjct: 142 KRRIHASYLFFFYTLVGSFLMLISIFSLYSFTGTSNI-EVLLNNQYSFYRENIVWLTFFI 200 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 SFAIKIPMFP H WLP AHV+APT GSV LAG++LK+G YG +RFL+PLFP ++ Y++P+ Sbjct: 201 SFAIKIPMFPAHIWLPEAHVEAPTEGSVLLAGVLLKLGSYGFLRFLMPLFPNSTYYYSPL 260 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 + ++ + I Y S V++ Q DIK++IAYSS++HM +G+F+ G+ G++ M++HG Sbjct: 261 VILIACLGIFYTSFVTLKQIDIKRIIAYSSVSHMNVCILGLFTFHSLGIAGSIHLMIAHG 320 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 LVS LFF VG++Y+R HT+ + Y GLV+ MP ++ +F ++N+ P TS FIGEFL Sbjct: 321 LVSGGLFFLVGMLYNRHHTKLLKYYSGLVYTMPLFSFFFFIFIISNISFPLTSNFIGEFL 380 Query: 398 VIMSVFQNSNTVAVLASF-GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 +I+ +F + N A+ + GV + +YSLWLY K+VF + K + ++ DLS E +++ Sbjct: 381 IIVGLFLSFNYYALFFTLVGVFICTVYSLWLYNKLVFMIPKYQYIKYYNDLSFLECSLLF 440 Query: 457 PIAVLTVFFGIYPVPI 472 I ++ GIYP I Sbjct: 441 IILFFVLWLGIYPYSI 456 >gi|157371534|ref|YP_001479523.1| NADH dehydrogenase subunit M [Serratia proteamaculans 568] gi|157323298|gb|ABV42395.1| proton-translocating NADH-quinone oxidoreductase, chain M [Serratia proteamaculans 568] Length = 509 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 191/506 (37%), Positives = 299/506 (59%), Gaps = 36/506 (7%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG------VALGISTINFIFSLFVWS- 53 M LP+L ++ PF+G + C + FG +AL + SL++W Sbjct: 1 MLLPWLILI---PFIGGLL--------CWQFERFGTKVPRWIALIAMGLTLALSLYLWMQ 49 Query: 54 -----VFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 KG +Q WI F S HL +DG+S+L+VVLT L IL SW+ I Sbjct: 50 GGYTLTTPKGIPQWQSEFLLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAILCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 Q+ + + L + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 QKYQGFFHLNLLWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + D + + P S +QY + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAIMGLVFVHYNATGVWTFDYEDLLQTPMSHNVQYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGMLRFSLPLFPEASHEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L ++ I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVVGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ +F G +Y+RLHTRD+ GGL + + + F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGMFIICGQLYERLHTRDMREMGGLWGRIKYIPALSLFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 ++ +Q + V+++FG+V +++YSL + ++ +G +K + Q L ++ RE ++ Sbjct: 410 ILFGSYQVVPVITVISTFGLVFASVYSLIMMQRAYYGKAKSD--QPLPGMTARELFIILL 467 Query: 458 IAVLTVFFGIYPVPIRDTFSVPLSSI 483 + VL V G+YP PI DT + +S++ Sbjct: 468 LVVLLVLLGVYPQPILDTSNAAMSNV 493 >gi|229591264|ref|YP_002873383.1| NADH dehydrogenase subunit M [Pseudomonas fluorescens SBW25] gi|229363130|emb|CAY50152.1| NADH dehydrogenase I chain M [Pseudomonas fluorescens SBW25] Length = 510 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 195/504 (38%), Positives = 301/504 (59%), Gaps = 26/504 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + G + +AL ++ L++W+ D Sbjct: 1 MILPWLILI---PFIGGLLCWMGERFGATLPRW--IALLTMSLELALGLWLWAHGDYSFA 55 Query: 57 --KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G +E+ H WI F + HL +DG+S+L+++LT L +L SWK IQ + Sbjct: 56 PAPGVDPTFALEFKHVWIQRFGINVHLALDGLSLLMILLTGLLGILSVLCSWKEIQRHVG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + + + V+G FL+LD+ +F+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLMWILGGVVGVFLALDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAI 221 FF++T + ML AI+ V+ T I YA +K + +Y + + FF +FA+ Sbjct: 176 FFIFTQASGLIMLVAILGLVLVNFNSTGVITFNYADLLKTKMSLTTEYILMLGFFIAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ PFH+WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L Sbjct: 236 KLPVVPFHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 LI I Y + ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++GA+ QML+HG+ ++ Sbjct: 296 GLIGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQLALQGAVIQMLAHGVSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GG+ + + + F A++GLPGT FIGEFL++M Sbjct: 356 ALFILSGQLYERLHTRDMREMGGVWSRIAYLPAISLFFAAASLGLPGTGNFIGEFLILMG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F + ++ +A+ G+V ++YSL + + FG +K + V L+ + RE MV +AVL Sbjct: 416 AFVQTPWISAIATSGLVFGSVYSLIMIHRAYFGPAKSDTV--LQGMDARELIMVLGLAVL 473 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIE 485 ++ G+YP P DT + + + + Sbjct: 474 LIYIGVYPQPFLDTSAATMHGVQQ 497 >gi|58578638|ref|YP_203358.1| NADH dehydrogenase subunit 4 [Mortierella verticillata] gi|57545571|gb|AAW51695.1| NADH dehydrogenase subunit 4 [Mortierella verticillata] Length = 495 Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 187/485 (38%), Positives = 297/485 (61%), Gaps = 13/485 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L+ + F+P +G +LF + + + LG + INF+ SL +W FD +Q + Sbjct: 2 LTALFFIPLIGALSLLFVNKNESLMKR---ITLGSTIINFVISLVIWGKFDNNTHEYQFV 58 Query: 66 EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 + + I FC +++G+DGIS+ V+LTTFL P IL+SW + N + Y++ FL+LES++ Sbjct: 59 QEWAEIS-FCHFNVGIDGISLFFVLLTTFLFPIIILTSWDH-KNNLKSYLLNFLILESLL 116 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVV 184 I F+ LD+LLFYIFFE+ LIP+F+II +G + A + FLYT FGS+FML +I+ Sbjct: 117 IATFIVLDLLLFYIFFESILIPLFIIIINFGDLLTKEKAGFLLFLYTLFGSLFMLLSIIT 176 Query: 185 MCWEKKTSSIIDLYAMSKFPF--SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + T+ D +S F +Q +++ F +F +K P+ P H WL AHV AP Sbjct: 177 ILILTGTT---DFQILSTIDFGTDVQKLLFVGFLIAFIVKTPLIPGHIWLGFAHVAAPIG 233 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LAG++LK+ Y +R ++P P A+ YF P+I+ L++I+IIYASL + D+K + Sbjct: 234 GSVLLAGVILKLATYLALRVMIPFLPDATLYFTPLIYTLAVISIIYASLTCLRLIDVKAI 293 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG-VIYDRLHTRDIFA 361 IAYSS++HMG V +G+FS G+EGA+ L+HG++S LF VG ++Y R HTR I Sbjct: 294 IAYSSVSHMGVVVLGLFSNNLQGIEGAVILGLAHGVISPLLFIIVGDILYTRSHTRIIKY 353 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 Y G+ +MP +++ T+AN+ P + FIGEF+ FQ + +A+L + G+ L Sbjct: 354 YRGIATSMPILSLIFFFATLANIATPFSGNFIGEFMSFAGAFQQNPIMAILGATGIFLGT 413 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 YS+WL+ ++ FG + + + D+S RE ++ P+ +++ GIYP + D+ + +S Sbjct: 414 GYSIWLFNRISFG-TASRYMSTMPDISRREFFVLLPLIIVSFILGIYPNVVLDSLHLGIS 472 Query: 482 SIIEN 486 S++ N Sbjct: 473 SLLIN 477 >gi|206580685|ref|YP_002237335.1| NADH-quinone oxidoreductase, M subunit [Klebsiella pneumoniae 342] gi|288934265|ref|YP_003438324.1| proton-translocating NADH-quinone oxidoreductase, chain M [Klebsiella variicola At-22] gi|290508468|ref|ZP_06547839.1| NADH dehydrogenase I subunit M [Klebsiella sp. 1_1_55] gi|206569743|gb|ACI11519.1| NADH-quinone oxidoreductase, M subunit [Klebsiella pneumoniae 342] gi|288888994|gb|ADC57312.1| proton-translocating NADH-quinone oxidoreductase, chain M [Klebsiella variicola At-22] gi|289777862|gb|EFD85859.1| NADH dehydrogenase I subunit M [Klebsiella sp. 1_1_55] Length = 509 Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 190/509 (37%), Positives = 296/509 (58%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWMQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + K P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALAFVHFNATGVWTFNYEDLLKTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL + + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRQMGGLWSKIKWLPAMSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ ++ + V+++FG+V +++YSL + + FG +K E + L +SLRE ++ Sbjct: 410 ILFGSYKVVPVITVISTFGLVFASVYSLSMLHRAYFGKAKSEIAAKALPGMSLRELSIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G +P PI DT +S+I + Sbjct: 470 LLVVLLVLLGFFPQPILDTSHAAMSNIQQ 498 >gi|304398205|ref|ZP_07380079.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pantoea sp. aB] gi|304354071|gb|EFM18444.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pantoea sp. aB] Length = 506 Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 195/507 (38%), Positives = 298/507 (58%), Gaps = 28/507 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M LP+L I+ PF+G + + LG + +AL + SL +W G S Sbjct: 1 MLLPWLIII---PFVGGLICWLTERLGAKVPRW--IALITMGLTLALSLQLW--LQGGYS 53 Query: 61 SFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 Q W F S+HL +DG+S+L+VVLT L +L SW I + Sbjct: 54 LTQAAGIPQWQSSFSVPWIPRFGISFHLAIDGLSLLMVVLTGLLGLMAVLCSWNEISKYQ 113 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYK 166 + + + + VIG FLS+DM LF+ F+E L+PM+ +I +WG G RI AA K Sbjct: 114 GFFHLNLMWILGGVIGVFLSIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRISAATK 173 Query: 167 FFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAI 221 FF+YT + ML AI+ + + ++ + + + K P S ++Y + + FF +FA+ Sbjct: 174 FFIYTQASGLVMLIAILGLVFVHYNATGVWTFNYEQLLKTPMSSGVEYLLMLGFFIAFAV 233 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L Sbjct: 234 KMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWL 293 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +I I Y + ++ QTDIK+LIAY+SI+HMG+V I I++G + ++GA+ QM++HGL ++ Sbjct: 294 GIIGIFYGAWMAFSQTDIKRLIAYTSISHMGFVLIAIYTGSQLALQGAVIQMIAHGLSAA 353 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL + + + F +AN+G+PGT F+GEF+++ Sbjct: 354 ALFILCGQLYERLHTRDMRQMGGLWSRIKWIPGLSLFFAVANLGMPGTGNFVGEFMILTG 413 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 FQ + ++A+FG+V +++YSL + ++ +G +K + L +S RE + + VL Sbjct: 414 SFQVVPMIIIIATFGLVFASIYSLVMMQRAYYGEAKSKD--PLPGMSPREFMTIGVLVVL 471 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIENYT 488 V G+YP PI DT +S+I + +T Sbjct: 472 LVLLGVYPQPILDTSHAAMSNIQQWFT 498 >gi|261340665|ref|ZP_05968523.1| NADH dehydrogenase I, M subunit [Enterobacter cancerogenus ATCC 35316] gi|288317079|gb|EFC56017.1| NADH dehydrogenase I, M subunit [Enterobacter cancerogenus ATCC 35316] Length = 509 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 192/509 (37%), Positives = 294/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVAL----GISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKMPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F + HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFILPWIPRFGITIHLAIDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + P S I+Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYKATGVWTFNYEDLLNTPMSHGIEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ F+ + V+++FG+V +++YSL + + FG +K E QQL +SLRE ++ Sbjct: 410 ILFGSFKVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSEIAAQQLPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT + +I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMGNIQQ 498 >gi|237797237|ref|ZP_04585698.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020087|gb|EGI00144.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. oryzae str. 1_6] Length = 510 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 191/504 (37%), Positives = 299/504 (59%), Gaps = 26/504 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + G + +AL T+ + L++W+ + Sbjct: 1 MILPWLILI---PFIGGLLCWLGERFGSTLPRW--IALLTMTLELVLGLWLWATGNFGYA 55 Query: 57 --KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G +E++H WI F HL +DG+S+L+++LT L +L SWK IQ Sbjct: 56 PVPGADPTWTLEFHHPWITRFGIDVHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRKVG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + + + V+G FL++D+ +F+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLMWILGGVVGVFLAIDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAI 221 FF++T + ML AI+ V+ +T I YA +K +Y + + FF +FA+ Sbjct: 176 FFIFTQASGLIMLVAILGLVLVHFNQTGVITFAYADLLKTKLAPGTEYILMLGFFIAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H+WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L Sbjct: 236 KLPVVPLHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMGL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 L+ I Y + ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++G + QM++HGL ++ Sbjct: 296 GLVGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGVLIQMIAHGLSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+R+HTRD+ GGL + + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILSGQLYERMHTRDMREMGGLWSRIAYIPAISLFFAAASLGLPGTGNFVGEFLILLG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F +S + +A+ G+V ++YSL + + FG SK ++V LK + RE MV +AVL Sbjct: 416 SFASSPWITAIATSGLVFGSVYSLIMIHRAYFGPSKSDEV--LKGMDGREMIMVLGLAVL 473 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIE 485 + G++P P DT + + + + Sbjct: 474 LIVLGVFPQPFLDTSAATMHGVQQ 497 >gi|259907938|ref|YP_002648294.1| NADH dehydrogenase subunit M [Erwinia pyrifoliae Ep1/96] gi|224963560|emb|CAX55050.1| NADH dehydrogenase I chain M [Erwinia pyrifoliae Ep1/96] gi|283477819|emb|CAY73735.1| NADH dehydrogenase I chain M [Erwinia pyrifoliae DSM 12163] Length = 506 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 194/504 (38%), Positives = 303/504 (60%), Gaps = 22/504 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFD--- 56 M LP+L I LPF+G + S G + +A+G+ T+ L++ + Sbjct: 1 MLLPWLII---LPFVGGLLCWQSERFGAKLPRWIALIAMGL-TLALSLQLWLQGGYSLSQ 56 Query: 57 -KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 +G +Q WI F ++HL +DG+S+L+VVLT L IL SW I++ + Sbjct: 57 AEGGPQWQAQFSVPWIPRFGIAFHLALDGLSLLMVVLTGLLGVMAILCSWNEIEKWQGFF 116 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFL 169 + L + VIG FL++D+ LF+ F+E L+PM+ +I +WG G RI AA KFF+ Sbjct: 117 HLNLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFI 176 Query: 170 YTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIP 224 YT + ML AI+ + + ++ + + + K P S ++Y + + FF +FA+K+P Sbjct: 177 YTQASGLVMLIAILALVFVHYNATGVWTFNYEQLLKTPMSHGVEYLLMLGFFIAFAVKMP 236 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I Sbjct: 237 VVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMWLGII 296 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 I Y + ++ Q DIK+LIAY+SI+HMG+V I I++G + +GA+ QM++HGL ++ALF Sbjct: 297 GIFYGAWMAFSQYDIKRLIAYTSISHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAALF 356 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G +Y+RLHTRD+ GGL + + + F +AN+G+PGT F+GEF+++ F Sbjct: 357 ILCGQLYERLHTRDMRQMGGLWSRIKWLPGLSLFFAVANLGMPGTGNFVGEFMILTGSFH 416 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + + ++A+FG+V +++YSL + ++ +G +K E L+ +S RE M+ + VL V Sbjct: 417 SVPMIIIIATFGLVFASVYSLVMMQRAYYGPAKSET--PLRGMSAREFLMIMVLVVLLVL 474 Query: 465 FGIYPVPIRDTFSVPLSSIIENYT 488 G+YP PI DT +S+I + +T Sbjct: 475 LGVYPQPILDTSHAAMSNIQQWFT 498 >gi|107736863|ref|YP_626490.1| NADH dehydrogenase subunit 4 [Discosoma sp. CASIZ 168915] gi|107736890|ref|YP_626503.1| NADH dehydrogenase subunit 4 [Discosoma sp. CASIZ 168916] gi|99866574|gb|ABF67622.1| NADH dehydrogenase subunit 4 [Discosoma sp. CASIZ 168915] gi|99866588|gb|ABF67635.1| NADH dehydrogenase subunit 4 [Discosoma sp. CASIZ 168916] Length = 491 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 201/463 (43%), Positives = 285/463 (61%), Gaps = 18/463 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRS---FFGVALGISTINFIFSLFVWSVFDKGRSSF 62 L++V FL F+GV +S +G R VAL + +L +WSVFD F Sbjct: 8 LNLVFFLLFMGV-----ASVMGIPREEGEQLKRVALEWGLAILVCTLVLWSVFD-AEGQF 61 Query: 63 QMIEYYHWI-DYFCSYH-----LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 Q+I WI ++ L +DG+S+ +LT L P CIL SWKSI+ F+E+++ Sbjct: 62 QIINQIEWILSPILNFQWGLVILALDGVSLFFFILTALLIPICILISWKSIKYLFKEFLL 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGS 175 L LE+++IG FL LD+LLFYI FE LIPMF++IGVWG E++ A+Y FF YTF GS Sbjct: 122 CLLFLEALLIGVFLVLDLLLFYILFEGILIPMFLLIGVWGSREEKVRASYYFFFYTFAGS 181 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +FMLF + + T+ L + + PF Q W+ + F S A+KIP PFH WLP A Sbjct: 182 VFMLFGVFQLYRNTGTTDYQILLNI-QLPFCAQKWILVGVFFSLAVKIPQIPFHIWLPQA 240 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP +GSV LAGI+LK+GGYG +RF + P AS+Y AP+I L ++AIIY SL++ Sbjct: 241 HVEAPVSGSVILAGILLKLGGYGFLRFSWAILPAASEYLAPLIVMLGVVAIIYGSLITCR 300 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D K+LIAYSS+AHMG V +G+FS G+ A+F ML+HG VSSALF + +Y+R H Sbjct: 301 QVDFKRLIAYSSVAHMGLVPLGLFSHTIEGLVAAVFMMLAHGFVSSALFIAITYLYERHH 360 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR I Y G+ MP + +MM+ ++ NMG+P + F+GE +++ + + + VL + Sbjct: 361 TRLIKYYRGVTLTMPIFVTIMMILSLTNMGIPLSCNFVGELFSLLAAVEYNLGLGVLVTS 420 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 G+V SA YSL+LY ++ FG + +DL+ E V P+ Sbjct: 421 GMVWSAAYSLYLYNRISFG-GGSNYLLFTRDLNRGELLAVSPL 462 >gi|86159002|ref|YP_465787.1| proton-translocating NADH-quinone oxidoreductase subunit M [Anaeromyxobacter dehalogenans 2CP-C] gi|85775513|gb|ABC82350.1| NADH dehydrogenase subunit M [Anaeromyxobacter dehalogenans 2CP-C] Length = 549 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 187/502 (37%), Positives = 287/502 (57%), Gaps = 53/502 (10%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 +AL S ++F ++ W ++D + Q+++++ WI F ++ GVDGISI +V+L+ Sbjct: 46 IALVTSALSFAAAIAAWRMYDPSATGVQLVQHFTWIRAFNIEFYFGVDGISISMVLLSGL 105 Query: 95 LTPFCILSS--WKSIQENFR------------------------EYMIAFLVLESMVIGA 128 ++ ++S W S +++ YM L+L++ ++G Sbjct: 106 ISFIATIASMPWWSGKKDAEMAGMVDDGHEDPHHPKHFSVRMVPGYMAMLLLLQTGMMGT 165 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 F++LDM LFY+F+E L+PM+ +IG+WGG + YAA KFFLYT GS+ ML AI+ + + Sbjct: 166 FVALDMFLFYVFWEIMLLPMYFLIGIWGGPRKEYAAIKFFLYTLAGSVLMLLAIIGIYYN 225 Query: 189 KKTSSIID----------LYAMSK-------------FPFSIQYWMWIAFFCSFAIKIPM 225 + + D L ++K FS ++I F FAIKIPM Sbjct: 226 SAPAQLADGSWSSGHTFNLIELAKQGAAGQFRNAAPILGFSFAKIVFIGLFIGFAIKIPM 285 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 FPFHTWLP+AHV+APT SV LAG++LKMG YG +RF + P A+ + A I +I Sbjct: 286 FPFHTWLPDAHVEAPTPISVILAGVLLKMGIYGILRFNYGILPDATAWAAGAIAVFGVIN 345 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 IIYA+ V + Q D+KKLIAYSS++HMG+ +G+ + G+ GA+ + +HG++S LF Sbjct: 346 IIYAAFVCLAQKDLKKLIAYSSVSHMGFSLLGMAAMTPQGISGAVLNLFTHGIISPMLFL 405 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 VGVIYDR H R+I +GGL +P Y+ +M + A++GLPG +GFI EF V F Sbjct: 406 IVGVIYDRAHHREIEKFGGLAQELPEYSAIMGLAFFASLGLPGLAGFISEFTVFSGAFPV 465 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV-QQLKDLSLRERCMVYPIAVLTVF 464 T ++++ VVL+A Y LW ++ G K V + DL+ RER +YP+AV+ ++ Sbjct: 466 FTTYTIISATSVVLTAAYYLWAIHRMFLG--KLNPVYKGYPDLNWRERMSLYPLAVICIY 523 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G YP I + L ++I+N Sbjct: 524 LGFYPQAILGVINPALHALIQN 545 >gi|310768154|gb|ADP13104.1| NADH dehydrogenase subunit M [Erwinia sp. Ejp617] Length = 506 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 194/504 (38%), Positives = 303/504 (60%), Gaps = 22/504 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFD--- 56 M LP+L I LPF+G + S G + +A+G+ T+ L++ + Sbjct: 1 MLLPWLII---LPFVGGLLCWQSERFGAKLPRWIALIAMGL-TLALSLQLWLQGGYSLSQ 56 Query: 57 -KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 +G +Q WI F ++HL +DG+S+L+VVLT L IL SW I++ + Sbjct: 57 AEGGPQWQAQFSVPWIPRFGIAFHLALDGLSLLMVVLTGLLGVMAILCSWNEIEKWQGFF 116 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFL 169 + L + VIG FL++D+ LF+ F+E L+PM+ +I +WG G RI AA KFF+ Sbjct: 117 HLNLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFI 176 Query: 170 YTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIP 224 YT + ML AI+ + + ++ + + + K P S ++Y + + FF +FA+K+P Sbjct: 177 YTQASGLVMLIAILALVFVHYNATGVWTFNYEQLLKTPMSHGVEYLLMLGFFIAFAVKMP 236 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I Sbjct: 237 VVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMWLGII 296 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 I Y + ++ Q DIK+LIAY+SI+HMG+V I I++G + +GA+ QM++HGL ++ALF Sbjct: 297 GIFYGAWMAFSQYDIKRLIAYTSISHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAALF 356 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G +Y+RLHTRD+ GGL + + + F +AN+G+PGT F+GEF+++ F Sbjct: 357 ILCGQLYERLHTRDMRQMGGLWSRIKWLPGLSLFFAVANLGMPGTGNFVGEFMILTGSFH 416 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + + ++A+FG+V +++YSL + ++ +G +K E L+ +S RE M+ + VL V Sbjct: 417 SVPMMIIIATFGLVFASVYSLVMMQRAYYGPAKSET--PLRGMSAREFLMIMVLVVLLVL 474 Query: 465 FGIYPVPIRDTFSVPLSSIIENYT 488 G+YP PI DT +S+I + +T Sbjct: 475 LGVYPQPILDTSHAAMSNIQQWFT 498 >gi|115375182|ref|ZP_01462449.1| NADH-quinone oxidoreductase chain m [Stigmatella aurantiaca DW4/3-1] gi|310823127|ref|YP_003955485.1| NADH dehydrogenase I, m subunit [Stigmatella aurantiaca DW4/3-1] gi|115367833|gb|EAU66801.1| NADH-quinone oxidoreductase chain m [Stigmatella aurantiaca DW4/3-1] gi|309396199|gb|ADO73658.1| NADH dehydrogenase I, M subunit [Stigmatella aurantiaca DW4/3-1] Length = 555 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 187/508 (36%), Positives = 295/508 (58%), Gaps = 43/508 (8%) Query: 5 FLSIVTFLP--FLGVFVILFSSYLGCGR-RSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 LS+V FLP F G+ + + G R S G+ + SL+ W FD + Sbjct: 8 LLSLVVFLPLLFTGILAFIPAQEHGPIRVLSLLGL-----LADGAVSLWAWLRFDPAGAE 62 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ+ +++ SYH+GVDG++I LV+LT L P +L+SW+S+QE +E+ +A LV Sbjct: 63 FQLEHRASFLELGGVSYHVGVDGLAISLVMLTALLGPVVVLASWRSVQERVKEFHLALLV 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L+ +GA +SLD++LFYIFFEASL+P +++GVWGG+ R A+ ++FL +F GS+ ML Sbjct: 123 LQVFTMGALVSLDLMLFYIFFEASLLPTGLLVGVWGGALRNKASARYFLASFAGSVLMLV 182 Query: 181 AI-----VVMCWEKKT---------------------SSIIDLYAMSKFPFSIQYW-MWI 213 ++ V + ++T + + + A+S S+ W WI Sbjct: 183 SLLAVYSVALPAGQRTFDYALVSNTLQEAHRELAACRTPVAECGALSPLAQSVGNWGTWI 242 Query: 214 --AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 F +FA+K +FP H WL +AP A SV LA +K+G +G RF PLFP AS Sbjct: 243 FAGFALAFAVKSALFPVHRWLAETQSEAPRAASVLLA---IKLGAFGFWRFGFPLFPDAS 299 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 Q F ++ L++I+I+Y +L+ + Q DI++ +AY++I+H+G + +G+ + + G G+ + Sbjct: 300 QQFRGLLTVLAVISIVYGALMCLAQRDIRRFLAYATISHLGSILLGMLTLTEEGATGSAY 359 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 M++ GL ++A+F VG + ++ ++ + YGGL MPR+A ++ T + +GLPGT+G Sbjct: 360 HMINQGLSTAAIFLLVGFLQEQRGSKQVQDYGGLARTMPRFAGAFVLITFSLIGLPGTNG 419 Query: 392 FIGEFLVIMSVFQN--SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 F+ EFLV++ F++ S V LA+ GV+LSA Y LWL +KV+FG + + L+DL Sbjct: 420 FVSEFLVLLGAFKSNLSPAVGALAATGVILSAAYMLWLVQKVLFGPVRHPENHALRDLHG 479 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFS 477 RE M P VL V G+ P PI D Sbjct: 480 REWVMTVPFLVLVVVLGLKPQPILDRLE 507 >gi|16761242|ref|NP_456859.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141062|ref|NP_804404.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052933|ref|ZP_03345811.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427020|ref|ZP_03359770.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213623093|ref|ZP_03375876.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213645880|ref|ZP_03375933.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289829688|ref|ZP_06547229.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25285156|pir||AC0796 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503541|emb|CAD07549.1| NADH dehydrogenase I chain M [Salmonella enterica subsp. enterica serovar Typhi] gi|29136688|gb|AAO68253.1| NADH dehydrogenase I chain M [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 509 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 193/509 (37%), Positives = 296/509 (58%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMELTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCW-EKKTSSI--IDLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + K +S+ + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYKATSVWTFNYEELLNTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + Q+L +SLRE ++ Sbjct: 410 ILFGSYQVVPMITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELLGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT +S+I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQ 498 >gi|317492612|ref|ZP_07951039.1| proton-translocating NADH-quinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919362|gb|EFV40694.1| proton-translocating NADH-quinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 512 Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 190/503 (37%), Positives = 296/503 (58%), Gaps = 30/503 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M LP+L ++ PF+G F+ S G + +A+G++ + SL +W G Sbjct: 1 MLLPWLILI---PFIGGFLSWQSERFGTKAPRWIALIAMGLT---LVLSLQLW--LQGGY 52 Query: 60 SSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN 110 S Q W F +HL +DG+S+L+VVLT L IL SW IQ+ Sbjct: 53 SLTQAAGIPQWQSEFSIPWIPRFGIEFHLALDGLSLLMVVLTGLLGVLAILCSWNEIQKY 112 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAY 165 + + L + VIG FL++D+ LF+ F+E L+PM+ +I +WG G RI AA Sbjct: 113 QGFFHLNLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHKASDGKTRISAAT 172 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFCSFA 220 KFF+YT + ML AI+ + + ++ + + + P S +QY + + FF +FA Sbjct: 173 KFFIYTQSSGLIMLIAILGLVFVHYNATGVWTFNYEELLNTPMSHNVQYLLMLGFFIAFA 232 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ + Sbjct: 233 VKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPEASHEFAPIAMW 292 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I+SG + +GA+ QM++HGL + Sbjct: 293 LGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYSGNQLAYQGAVIQMIAHGLSA 352 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 + +F G +Y+RLHTRD+ GGL + + + F +A +G+PGT F+GEF+++ Sbjct: 353 AGMFIICGQLYERLHTRDMRLMGGLWGRIKYLPALSLFFAVATLGMPGTGNFVGEFMILF 412 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 FQ + ++++FG+V +++YSL + ++ +G K +K L +S RE ++ + V Sbjct: 413 GSFQVVPVITIISTFGLVFASVYSLIMMQRAYYGAPKSDK--PLPGMSARELSIILLLVV 470 Query: 461 LTVFFGIYPVPIRDTFSVPLSSI 483 L V G+YP PI DT S ++++ Sbjct: 471 LLVALGLYPQPILDTSSAAMTNV 493 >gi|153004147|ref|YP_001378472.1| proton-translocating NADH-quinone oxidoreductase subunit M [Anaeromyxobacter sp. Fw109-5] gi|152027720|gb|ABS25488.1| proton-translocating NADH-quinone oxidoreductase, chain M [Anaeromyxobacter sp. Fw109-5] Length = 554 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 193/544 (35%), Positives = 300/544 (55%), Gaps = 65/544 (11%) Query: 6 LSIVTFLPFLG---VFVILFSSYLGCGRRSFFG-----VALGISTINFIFSLFVWSVFDK 57 LS TF P LG + V+L ++ + +AL S ++F+ ++ W ++D Sbjct: 9 LSWATFFPLLGAAAIVVLLAVRFVANLPKKLVDDGARLIALLTSGLSFVAAIAAWRMYDP 68 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS---WKSIQ----- 108 + Q+ +++ WI F Y++GVDG+SI +V+L+ ++ ++S W + Sbjct: 69 TDTGVQLAQHFVWIRAFNIEYYVGVDGLSISMVLLSGLISFVATIASMPWWSGAKAAEMA 128 Query: 109 -----------------ENFR-----EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLI 146 ++F YM+ L+L++ ++G F+SLDM LFY+F+E L+ Sbjct: 129 GMVDDDHGHGHDDAHHPKHFSVRMVPGYMVMLLLLQTGMMGTFVSLDMFLFYVFWEVMLL 188 Query: 147 PMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS 206 PM+ +IGVWGG + YAA KFFLYT GS+ ML AI+ + + + + D S F+ Sbjct: 189 PMYFLIGVWGGPRKEYAAIKFFLYTLAGSVLMLLAIIGIYYNSLPAMLADGTMSSGHTFN 248 Query: 207 I-----------------------QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + ++A F FAIKIPMFPFHTWLP+AHV+APT Sbjct: 249 LIELGKQGAQGQFLNAAPILGMQFTKLAFVALFIGFAIKIPMFPFHTWLPDAHVEAPTPI 308 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAG++LKMG YG +RF PL P A+ + A + +I I+YA+ V + Q D+KKLI Sbjct: 309 SVILAGVLLKMGIYGILRFNYPLLPDATAWAANAMAVFGVINIVYAAFVCLGQKDLKKLI 368 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG+ +G+ + +G+ GA+ + +HG++S LF VGVIYDR H R+I +G Sbjct: 369 AYSSVSHMGFSLLGMAAMTPAGISGAVLNLFTHGIISPMLFLIVGVIYDRAHHREIEKFG 428 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P Y +M + A++GLPG +GFI EF+V F T ++++ V+++A Y Sbjct: 429 GLAAELPEYTAIMGLAFFASLGLPGLAGFIAEFMVFTGAFPVFTTYTIISATAVIITAAY 488 Query: 424 SLWLYRKVVFGVSKCEKV-QQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 LW ++ G K V + DL+ RER +YP+A + + G YP I + L Sbjct: 489 YLWAIHRMFLG--KLNPVYKGYPDLNWRERISLYPLAAIAIVLGFYPQAILGVINRSLHL 546 Query: 483 IIEN 486 +I+N Sbjct: 547 LIQN 550 >gi|300770870|ref|ZP_07080747.1| NADH dehydrogenase (quinone) subunit M [Sphingobacterium spiritivorum ATCC 33861] gi|300762143|gb|EFK58962.1| NADH dehydrogenase (quinone) subunit M [Sphingobacterium spiritivorum ATCC 33861] Length = 534 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 187/509 (36%), Positives = 294/509 (57%), Gaps = 53/509 (10%) Query: 30 RRSFFGVALGISTINFIFSLFVWSVFDKGRSS------FQMIEYYHWI--------DYFC 75 S+ +AL + + + + +++ FD R+ +Q +E WI Sbjct: 26 NNSYKYLALAFTVVQLLIAGYLYIHFDATRTGINTEEGYQFVEQLSWIRLDLGTIGKLEI 85 Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 Y LG+DG+S+ LV+L+ F+ I +SW +IQ++ + Y +VL V+G F +LD Sbjct: 86 DYFLGLDGVSLPLVLLSAFVMLMAIGASW-NIQKSPKGYFALLMVLNMAVMGIFCALDFF 144 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 LFY+F+E L+P++ +IG+WGG+ R YAA KFF+YT FGS+FML IV + + T+ + Sbjct: 145 LFYVFYEVMLLPLYFLIGIWGGTRREYAAIKFFIYTLFGSVFMLLVIVGLYFSV-TNPVT 203 Query: 196 DLYAMSK-----------------------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 Y + F +S + +I F +F IK+P+ P HTWL Sbjct: 204 GAYTFNMLSMMNPDNYVEGGFFSPDSLSTIFGWSTRLVGFIVLFFAFGIKVPIVPLHTWL 263 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHV+APT S+ LAGI+LK+GGYG IR +FP + I + +I+I+Y ++ Sbjct: 264 PDAHVEAPTPISIILAGILLKIGGYGIIRICYGIFPDIAAQTNWWIGLIGVISILYGAMN 323 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q D+K++IAYSS++HMG+V +GI S G+ GAMFQM+SHG +S+ALFF VGV+YD Sbjct: 324 ALAQKDLKRMIAYSSVSHMGFVLLGIASLTAEGISGAMFQMISHGFLSAALFFLVGVVYD 383 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT---- 408 R+H R I+ + GL MP+Y + + A++GLPG S FIGE VI+ F ++ Sbjct: 384 RVHDRYIYHFRGLATIMPKYTAFVAIAFFASLGLPGFSAFIGEAFVIIGTFNAASIGSAL 443 Query: 409 ---VAVLASFGVVLSALYSLWLYRKVVFGVSKCEK----VQQLKDLSLRERCMVYPIAVL 461 +A+ S G++LSA Y LW +++ FG ++ + V +L D++LRE+ +++P L Sbjct: 444 PRWMAIAGSIGILLSAAYFLWTLQRMFFGQTRLKGGESWVSKLTDINLREQIILFPTIAL 503 Query: 462 TVFFGIYPVPIRDTFSVPL---SSIIENY 487 + GI+P I D + + SI+ Y Sbjct: 504 ALVLGIFPFLIFDKMNASVLHFVSILHQY 532 >gi|168237334|ref|ZP_02662392.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736746|ref|YP_002115386.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204929259|ref|ZP_03220402.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194712248|gb|ACF91469.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289613|gb|EDY28976.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204321803|gb|EDZ07002.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322617063|gb|EFY13969.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617631|gb|EFY14530.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624739|gb|EFY21568.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630288|gb|EFY27058.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634469|gb|EFY31202.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639179|gb|EFY35871.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640042|gb|EFY36709.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645737|gb|EFY42261.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651512|gb|EFY47887.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656072|gb|EFY52371.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659425|gb|EFY55672.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665885|gb|EFY62068.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669875|gb|EFY66016.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673861|gb|EFY69958.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678619|gb|EFY74675.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683585|gb|EFY79599.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687661|gb|EFY83631.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193505|gb|EFZ78710.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198410|gb|EFZ83512.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201924|gb|EFZ86986.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208538|gb|EFZ93477.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209753|gb|EFZ94677.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218289|gb|EGA02999.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222954|gb|EGA07303.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227389|gb|EGA11554.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232284|gb|EGA16387.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235682|gb|EGA19766.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241157|gb|EGA25193.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244899|gb|EGA28901.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250018|gb|EGA33912.1| NADH:ubiquinone oxidoreductase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251630|gb|EGA35498.1| NADH:ubiquinone oxidoreductase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254941|gb|EGA38732.1| NADH:ubiquinone oxidoreductase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260651|gb|EGA44259.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268103|gb|EGA51580.1| NADH:ubiquinone oxidoreductase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270804|gb|EGA54242.1| NADH:ubiquinone oxidoreductase subunit M [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 509 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 191/509 (37%), Positives = 295/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + Q+L +SLRE ++ Sbjct: 410 ILFGSYQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT +S+I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQ 498 >gi|311278766|ref|YP_003940997.1| proton-translocating NADH-quinone oxidoreductase, chain M [Enterobacter cloacae SCF1] gi|308747961|gb|ADO47713.1| proton-translocating NADH-quinone oxidoreductase, chain M [Enterobacter cloacae SCF1] Length = 509 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 190/509 (37%), Positives = 295/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F + HL +DG+S+L+VVLT L +L SW I Sbjct: 50 GGYSLTQSAGIPQWQSEFILPWIPRFGITIHLAIDGLSLLMVVLTGLLGVLAVLCSWNEI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA---MSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + ++ + K P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFSYEQLLKTPMSHNVEYLLMLGFFV 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFAQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ F+ + V+++FG+V +++YSL + + FG +K E Q++ +SLRE ++ Sbjct: 410 ILFGSFKVVPMITVISTFGLVFASVYSLAMLHRAYFGKAKSEIAAQEMPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT + +I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMGNIQQ 498 >gi|300717640|ref|YP_003742443.1| NADH dehydrogenase I chain M [Erwinia billingiae Eb661] gi|299063476|emb|CAX60596.1| NADH dehydrogenase I chain M [Erwinia billingiae Eb661] Length = 506 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 182/442 (41%), Positives = 273/442 (61%), Gaps = 13/442 (2%) Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 G +Q + WI F + HL +DG+S+L+VVLT L IL SW I++ + + Sbjct: 59 GIPQWQSEFFVSWIPRFGINVHLALDGLSLLMVVLTGLLGVMAILCSWNEIEKWQGFFHL 118 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYT 171 L + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT Sbjct: 119 NLLWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRISAATKFFIYT 178 Query: 172 FFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMF 226 + ML AI+ + + ++ + + + K P S ++Y + + FF +FA+K+P+ Sbjct: 179 QASGLIMLIAILGLVFVHYNATGVWTFNYEELLKTPMSQHVEYLLMLGFFIAFAVKMPVV 238 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L LI I Sbjct: 239 PLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASHDFAPIAMVLGLIGI 298 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 Y + ++ Q DIK+LIAY+SI+HMG+V I I++G + +GA+ QM++HGL ++ALF Sbjct: 299 FYGAWMAFSQYDIKRLIAYTSISHMGFVLIAIYTGSQLAFQGAVVQMIAHGLSAAALFIL 358 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 G +Y+RLHTRD+ GGL + + + F +AN+G+PGT F+GEF+++ F+ Sbjct: 359 CGQLYERLHTRDMRQMGGLWSRIKWLPGLSLFFAVANLGMPGTGNFVGEFMILTGSFKTV 418 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 V+A+FG+V +++YSL + ++ +G K E L+ ++ RE M+ + VL V G Sbjct: 419 PVTIVIATFGLVFASVYSLVMMQRAYYGAPKSET--PLRGMNAREFLMIMVLVVLLVLLG 476 Query: 467 IYPVPIRDTFSVPLSSIIENYT 488 +YP PI DT +S+I + YT Sbjct: 477 VYPQPILDTSHAAMSNIQQWYT 498 >gi|330810474|ref|YP_004354936.1| NADH-quinone oxidoreductase subunit M [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378582|gb|AEA69932.1| NADH-quinone oxidoreductase subunit M [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 510 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 190/472 (40%), Positives = 288/472 (61%), Gaps = 27/472 (5%) Query: 36 VALGISTINFIFSLFVWSVFD------KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISIL 87 +AL ++ L++W+ D G +E+ H WI F S HL +DG+S+L Sbjct: 31 IALLTMSLELALGLWLWATGDYSFAPAPGADPTWALEFKHAWIARFGISVHLALDGLSLL 90 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 +++LT L +L SWK IQ + + + + + VIG FL+LD+ +F+ F+E L+P Sbjct: 91 MILLTGLLGILSVLCSWKEIQRHVGFFHLNLMWILGGVIGVFLALDLFMFFFFWEMMLVP 150 Query: 148 MFVIIGVWGGSE------RIYAAYKFFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA 199 M+ +I +WG S RIYAA KFF++T + ML AI+ V+ T I YA Sbjct: 151 MYFLIALWGHSSSDGKKTRIYAATKFFIFTQASGLIMLVAILGLVLVNFNNTGVITFNYA 210 Query: 200 ------MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 MSK + +Y + + FF +FA+K+P+ PFH+WLP+AH QAPTAGSV LAGI+LK Sbjct: 211 DLLKVQMSK---TTEYVLMLGFFIAFAVKLPVVPFHSWLPDAHAQAPTAGSVDLAGILLK 267 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 YG +RF LPLFP AS FAP+ L LI I Y + ++ QTDIK+LIA+SS++HMG+ Sbjct: 268 TAAYGLLRFALPLFPNASAEFAPIAMTLGLIGIFYGAFLAFAQTDIKRLIAFSSVSHMGF 327 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V IGI+SG + ++GA+ QML+HGL ++ALF G +Y+RLHTRD+ GG+ + Sbjct: 328 VLIGIYSGSQLALQGAVIQMLAHGLSAAALFILSGQLYERLHTRDMREMGGIWSRIAYLP 387 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 + + F A++GLPGT F+GEFL+++ F ++ + +A+ G+V ++YSL + + F Sbjct: 388 AISLFFAAASLGLPGTGNFVGEFLILIGTFASAPWITAIATSGLVFGSVYSLIMIHRAYF 447 Query: 434 GVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 G +K ++V L+ + RE MV +AVL V+ G+ P P DT + + + + Sbjct: 448 GPTKSDEV--LRGMDGRELIMVLGLAVLLVYLGVSPQPFLDTSAATMHGVQQ 497 >gi|161502538|ref|YP_001569650.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863885|gb|ABX20508.1| hypothetical protein SARI_00582 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 509 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 191/509 (37%), Positives = 295/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + Q+L +SLRE ++ Sbjct: 410 ILFGSYQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIANQELPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT +S+I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQ 498 >gi|157144792|ref|YP_001452111.1| NADH dehydrogenase subunit M [Citrobacter koseri ATCC BAA-895] gi|157081997|gb|ABV11675.1| hypothetical protein CKO_00519 [Citrobacter koseri ATCC BAA-895] Length = 509 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 190/509 (37%), Positives = 294/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW I Sbjct: 50 GGYSLTQAAGIPQWQSEFILPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWNEI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + K P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHHNATGVWTFNYEDLLKTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL + + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWSKIKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + Q + +SLRE ++ Sbjct: 410 ILFGSYQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQDMPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT +S+I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQ 498 >gi|168229686|ref|ZP_02654744.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168261667|ref|ZP_02683640.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168817953|ref|ZP_02829953.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443272|ref|YP_002041577.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194469313|ref|ZP_03075297.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|198245514|ref|YP_002216387.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389043|ref|ZP_03215655.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353432|ref|YP_002227233.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857735|ref|YP_002244386.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238912404|ref|ZP_04656241.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194401935|gb|ACF62157.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194455677|gb|EDX44516.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197940030|gb|ACH77363.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199606141|gb|EDZ04686.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273213|emb|CAR38176.1| NADH dehydrogenase I chain M [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205335830|gb|EDZ22594.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205345025|gb|EDZ31789.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349436|gb|EDZ36067.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709538|emb|CAR33883.1| NADH dehydrogenase I chain M [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320086751|emb|CBY96523.1| NADH dehydrogenase I chain M [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|326624138|gb|EGE30483.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628524|gb|EGE34867.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 509 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 191/509 (37%), Positives = 295/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + Q+L +SLRE ++ Sbjct: 410 ILFGSYQVVPMITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT +S+I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQ 498 >gi|167549684|ref|ZP_02343443.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325326|gb|EDZ13165.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 509 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 190/509 (37%), Positives = 295/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + Q+L +SLRE ++ Sbjct: 410 ILFGSYQVVPMITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL + G YP PI DT +S+I + Sbjct: 470 LLVVLLILLGFYPQPILDTSHSAMSNIQQ 498 >gi|296103958|ref|YP_003614104.1| NADH dehydrogenase subunit M [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058417|gb|ADF63155.1| NADH dehydrogenase subunit M [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 509 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 189/509 (37%), Positives = 295/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVAL----GISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKMPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F + HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFILPWIPRFGITIHLAIDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + K P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHHNATGVWTFNYEDLLKTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL + + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWSKIKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ F+ + V+++FG+V +++YSL + + FG +K E Q+L +SLRE ++ Sbjct: 410 ILFGSFKVVPMITVISTFGLVFASVYSLAMLHRAYFGKAKSEIAAQELPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G +P PI DT + +I + Sbjct: 470 LLVVLLVLLGFFPQPILDTSHSAMGNIQQ 498 >gi|312172992|emb|CBX81247.1| NADH dehydrogenase I chain M [Erwinia amylovora ATCC BAA-2158] Length = 506 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 193/504 (38%), Positives = 303/504 (60%), Gaps = 22/504 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFD--- 56 M LP+L I LPF+G + G + +A+G+ T+ L++ + Sbjct: 1 MLLPWLII---LPFVGGLLCWQGERFGAKLPRWIALIAMGL-TLALSLQLWLQGGYSLSQ 56 Query: 57 -KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 +G +Q WI F ++HL +DG+S+L+VVLT L IL SW I++ + Sbjct: 57 AEGGPQWQAQFSVPWIPRFGIAFHLALDGLSLLMVVLTGLLGVMAILCSWNEIEKWQGFF 116 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFL 169 + L + VIG FL++D+ LF+ F+E L+PM+ +I +WG G RI AA KFF+ Sbjct: 117 HLNLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFI 176 Query: 170 YTFFGSIFMLFAIVVMCWEKKTSSIIDLYA---MSKFPFS--IQYWMWIAFFCSFAIKIP 224 YT + ML AI+ + + ++ + ++ + K P S ++Y + + FF +FA+K+P Sbjct: 177 YTQASGLVMLIAILALVFVHYNATGVWTFSYEQLLKTPMSHGVEYLLMLGFFIAFAVKMP 236 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I Sbjct: 237 VVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPDASAEFAPIAMWLGMI 296 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 I Y + ++ Q DIK+LIAY+SI+HMG+V I I++G + +GA+ QM++HGL ++ALF Sbjct: 297 GIFYGAWMAFSQYDIKRLIAYTSISHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAALF 356 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G +Y+RLHTRD+ GGL + + + F +AN+G+PGT F+GEF+++ F Sbjct: 357 ILCGQLYERLHTRDMRQMGGLWSRIKWLPGLSLFFAVANLGMPGTGNFVGEFMILTGSFH 416 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + + ++A+FG+V +++YSL + ++ +G +K E L+ +S RE M+ + VL V Sbjct: 417 SVPLIIIIATFGLVFASVYSLVMMQRAYYGPAKSET--PLRGMSAREFLMIMVLVVLLVL 474 Query: 465 FGIYPVPIRDTFSVPLSSIIENYT 488 G+YP PI DT +S+I + +T Sbjct: 475 LGVYPQPILDTSHAAMSNIQQWFT 498 >gi|156494372|ref|YP_001427398.1| NADH dehydrogenase subunit 4-like protein [Phaeosphaeria nodorum SN15] gi|156106279|gb|ABU49442.1| NADH dehydrogenase subunit 4-like protein [Phaeosphaeria nodorum SN15] Length = 770 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 193/481 (40%), Positives = 294/481 (61%), Gaps = 4/481 (0%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + P LGVF ILF+ G + +AL S +NF SL ++ +FD + FQ + Sbjct: 3 LSFLLLTPILGVFAILFNKDSGASSANIKSIALITSILNFFISLVIFILFDFSTNQFQFV 62 Query: 66 EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 + Y I YF Y LGVDG+SI ++LTT + P ++S+WKSI ++ Y+IA L+LES++ Sbjct: 63 QEYRDISYFDLY-LGVDGLSIYFILLTTLIIPISLVSNWKSITKDVESYVIAILLLESLL 121 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM 185 + FL LD+LLFYIFFE+ L P+F++IG++G R+ A++ FLYT GS+F+L +I+ M Sbjct: 122 LAVFLVLDILLFYIFFESILPPLFILIGLFGSDNRVKASFYLFLYTLLGSLFLLLSILAM 181 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + + L+ F + Q +++ F +FA+K P +TWL AHV++P GS+ Sbjct: 182 SSIMSNTDLDTLFK-GNFLYLTQLFLFYGIFIAFAVKTPTIFLNTWLLKAHVESPLGGSI 240 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA I+LK+ YG +R +LP+ P A + +IF + +I IIYASL ++ D+K+LIAY Sbjct: 241 ILAAIVLKLSLYGILRLILPILPKAYMVYTYIIFLIGVITIIYASLSTLRTIDVKELIAY 300 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGG 364 SS++H +G+FS G+EGA+ L+HGLVS LF GV+YDR TR I Y G Sbjct: 301 SSVSHAAVYLLGVFSNSIQGIEGAINLGLAHGLVSPGLFISAGGVLYDRASTRVISFYRG 360 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + MP ++++ + +AN G P + FIGEFL + VF+ S+ V AS ++ SA Y+ Sbjct: 361 VTQLMPLFSILFFILCLANCGAPLSLNFIGEFLSLYGVFERSSLFGVFASSSIIFSAAYT 420 Query: 425 LWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 +++Y+++ FG L DL+ RE ++ + + TVFFGIYP I D +S++ Sbjct: 421 IYMYQRIAFGGVYSRMFTFSLPDLTKREFTVLLLLVIPTVFFGIYPAAILDGVHYSVSTL 480 Query: 484 I 484 I Sbjct: 481 I 481 >gi|197361720|ref|YP_002141356.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197093196|emb|CAR58640.1| NADH dehydrogenase I chain M [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 509 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 190/511 (37%), Positives = 295/511 (57%), Gaps = 35/511 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYKATGVWTFNYEELLNTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +G + QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGVVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + Q+L +SLRE ++ Sbjct: 410 ILFGSYQVVPMITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 + VL V G YP PI DT +S+I + + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQRF 500 >gi|308187593|ref|YP_003931724.1| NADH dehydrogenase I chain M [Pantoea vagans C9-1] gi|308058103|gb|ADO10275.1| NADH dehydrogenase I chain M [Pantoea vagans C9-1] Length = 506 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 193/507 (38%), Positives = 298/507 (58%), Gaps = 28/507 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M LP+L I+ PF+G + + LG + +AL + SL +W G S Sbjct: 1 MLLPWLIII---PFVGGLICWLTERLGAKVPRW--IALITMGLTLALSLQLW--LQGGYS 53 Query: 61 SFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 Q W F S+HL +DG+S+L+VVLT L +L SW I + Sbjct: 54 LTQAAGIPQWQSSFSVPWIPRFGISFHLAIDGLSLLMVVLTGLLGLMAVLCSWNEISKYQ 113 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYK 166 + + + + VIG FLS+D+ LF+ F+E L+PM+ +I +WG G RI AA K Sbjct: 114 GFFHLNLMWILGGVIGVFLSIDLFLFFFFWEMMLVPMYFLIALWGHKASDGKTRISAATK 173 Query: 167 FFLYTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAI 221 FF+YT + ML AI+ + + ++ + + + + P S ++Y + + FF +FA+ Sbjct: 174 FFIYTQASGLVMLIAILGLVFVHYNATGVWTFNYEQLLQTPMSNGVEYLLMLGFFIAFAV 233 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L Sbjct: 234 KMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWL 293 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +I I Y + ++ QTDIK+LIAY+SI+HMG+V I I++G + ++GA+ QM++HGL ++ Sbjct: 294 GIIGIFYGAWMAFSQTDIKRLIAYTSISHMGFVLIAIYTGSQLALQGAVIQMIAHGLSAA 353 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL + + + F +AN+G+PGT F+GEF+++ Sbjct: 354 ALFILCGQLYERLHTRDMRQMGGLWSRIKWIPGLSLFFAVANLGMPGTGNFVGEFMILTG 413 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 FQ + ++A+FG+V +++YSL + ++ +G +K + L +S RE + + VL Sbjct: 414 SFQVVPMIIIIATFGLVFASIYSLVMMQRAYYGEAKSKD--PLPGMSPREFMTIGVLVVL 471 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIENYT 488 V G+YP PI DT +S+I + +T Sbjct: 472 LVLLGVYPQPILDTSHAAMSNIQQWFT 498 >gi|289641415|ref|ZP_06473579.1| proton-translocating NADH-quinone oxidoreductase, chain M [Frankia symbiont of Datisca glomerata] gi|289508751|gb|EFD29686.1| proton-translocating NADH-quinone oxidoreductase, chain M [Frankia symbiont of Datisca glomerata] Length = 528 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 175/482 (36%), Positives = 292/482 (60%), Gaps = 26/482 (5%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 + L ++ + F+ +L ++ R+ FQ + Y WI F SY +G DGIS++L++L T Sbjct: 35 ITLAVTLVEFVLALLATIAYEPARTGFQFAQKYSWIKQFGISYSVGADGISLVLILLATL 94 Query: 95 LTPFCILSSWKSIQENF--------REYMIAF----LVLESMVIGAFLSLDMLLFYIFFE 142 L P +L+SW + R + AF L LE+ ++G F + D+ LFY+FFE Sbjct: 95 LVPIVVLASWDEVDAASPDGTPVVGRRSVPAFFALLLTLEAGMVGVFAATDVFLFYVFFE 154 Query: 143 ASLIPMFVIIGVWG----GSERIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSII 195 A LIPM+ +IG +G ++R YAA KF LY+ G + ML A++ V+ ++ + Sbjct: 155 AMLIPMYFLIGSYGPVKEQAQRSYAAVKFLLYSLLGGLLMLAAVIGLYVVSADQLGTGTF 214 Query: 196 DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 D + + + +Q +++ FF +FAIK P+FPFHTWLP+A Q+PT G++ L G++ K Sbjct: 215 DFATLRQLDITPGVQKLLFLGFFIAFAIKAPLFPFHTWLPDAGAQSPTGGAILLVGVLDK 274 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +G +G IR+ +PLFP AS YFAP++ L++I I Y +L+++ Q D+K+L+AY+S+AH G+ Sbjct: 275 VGTFGLIRYCIPLFPDASSYFAPMVLALAVIGIFYGALLAIGQRDMKRLVAYTSLAHFGF 334 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 + +G F+ GA+ M++HGL + LF VG + R +RD+ AYGG+ P A Sbjct: 335 IAMGTFALTSQAGTGAVLYMVNHGLSTGLLFLVVGFLVARRGSRDVSAYGGMAQVTPVLA 394 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 V ++ ++++ LPG + F+ EFLV++ F +A++A+ G+VL+A+Y L+LY++ + Sbjct: 395 GVFLIAGLSSLALPGLNSFVSEFLVLVGTFTRYRALAIVATCGIVLAAIYILYLYQRTMT 454 Query: 434 GVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGY 493 G E + + DLS+RE+ +V P+ L + GIYP P+ D +++ E+ G+ Sbjct: 455 GPLVSEDARGVLDLSVREKIVVAPVVALIIALGIYPKPLIDIVRPTVTATFED----AGH 510 Query: 494 SD 495 +D Sbjct: 511 TD 512 >gi|188533358|ref|YP_001907155.1| NADH dehydrogenase subunit M [Erwinia tasmaniensis Et1/99] gi|188028400|emb|CAO96261.1| NADH dehydrogenase I chain M [Erwinia tasmaniensis Et1/99] Length = 506 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 193/504 (38%), Positives = 302/504 (59%), Gaps = 22/504 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFD--- 56 M LP+L I LPF+G + S G + +A+G+ T+ L++ + Sbjct: 1 MLLPWLII---LPFVGGLLCWQSERFGAKLPRWIALIAMGL-TLALSLQLWLQGGYSLSQ 56 Query: 57 -KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 +G +Q WI F ++HL +DG+S+L+VVLT L IL SW I++ + Sbjct: 57 AEGGPQWQAQFSVPWIPRFGIAFHLALDGLSLLMVVLTGLLGVMAILCSWNEIEKWQGFF 116 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFL 169 + L + VIG F ++D+ LF+ F+E L+PM+ +I +WG G RI AA KFF+ Sbjct: 117 HLNLLWILGGVIGVFFAIDLFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFI 176 Query: 170 YTFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIP 224 YT + ML AI+ + + ++ + + + K P S ++Y + + FF +FA+K+P Sbjct: 177 YTQASGLVMLIAILALVFVHYNATGVWTFNYEDLLKTPMSHGVEYLLMLGFFIAFAVKMP 236 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I Sbjct: 237 VVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMWLGII 296 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 I Y + ++ Q DIK+LIAY+SI+HMG+V I I++G + +GA+ QM++HGL ++ALF Sbjct: 297 GIFYGAWMAFSQYDIKRLIAYTSISHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAALF 356 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G +Y+RLHTRD+ GGL + + + F +AN+G+PGT F+GEF+++ F Sbjct: 357 ILCGQLYERLHTRDMRRMGGLWSRIKWLPGLSLFFAVANLGMPGTGNFVGEFMILTGSFH 416 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + + ++A+FG+V +++YSL + ++ +G +K E L+ +S RE M+ + VL V Sbjct: 417 SVPLIIIIATFGLVFASVYSLVMMQRAYYGPAKSET--PLRGMSAREFLMIMVLVVLLVL 474 Query: 465 FGIYPVPIRDTFSVPLSSIIENYT 488 G+YP PI DT +S+I + +T Sbjct: 475 LGVYPQPILDTSHAAMSNIQQWFT 498 >gi|251789025|ref|YP_003003746.1| NADH dehydrogenase subunit M [Dickeya zeae Ech1591] gi|247537646|gb|ACT06267.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dickeya zeae Ech1591] Length = 532 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 176/430 (40%), Positives = 270/430 (62%), Gaps = 13/430 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S HL +DG+S+L+VVLT L IL SW+ IQ + + L + VIG Sbjct: 92 WIPRFGISIHLALDGLSLLMVVLTGLLGVLAILCSWREIQRYQGFFHLNLLWILGGVIGV 151 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 152 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKGSDGKTRIAAATKFFIYTQASGLVMLIAIL 211 Query: 184 VMCWEKKTSS---IIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ D + K P S ++Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 212 ALVFVHHNATGEWTFDYSRLLKTPMSYGLEYALMLGFFIAFAVKMPVVPLHGWLPDAHSQ 271 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ QTD Sbjct: 272 APTAGSVDLAGILLKTAAYGLLRFSLPLFPTASHDFAPIAMWLGIIGIFYGAWMAFKQTD 331 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I+SG + +GA+ QM++HGL ++ LF G +Y+RLHTRD Sbjct: 332 IKRLIAYTSVSHMGFVMIAIYSGSQLAYQGAVIQMIAHGLSAAGLFIICGQMYERLHTRD 391 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ + + V+++FG+V Sbjct: 392 LRQMGGLWGRIRYLPALSLFFAVATLGMPGTGNFVGEFMILFGSYPVVPVITVISTFGLV 451 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G +K + + L+ ++ RE ++ + VL V G+YP PI DT S Sbjct: 452 FASVYSLVMMQRAFYGAAKSD--EPLQGMTARELSLILLLVVLLVLLGVYPQPILDTSSA 509 Query: 479 PLSSIIENYT 488 +++I +T Sbjct: 510 AMANIQHWFT 519 >gi|195953138|ref|YP_002121428.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hydrogenobaculum sp. Y04AAS1] gi|195932750|gb|ACG57450.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hydrogenobaculum sp. Y04AAS1] Length = 492 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 190/461 (41%), Positives = 285/461 (61%), Gaps = 24/461 (5%) Query: 6 LSIVTFLPFLGVFVI-LFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGRSSF 62 L+I FLP +G F++ LF R + V++ IS + F S+ + F+ F Sbjct: 5 LNIAIFLPLVGAFIVSLF-------RNEWLTKVVSIAISGVVFALSVILLVNFNPNTHHF 57 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAFLV 120 WI +Y +G+DG+ + L LT + F + W ++E + FL+ Sbjct: 58 LYRTTVPWISSLGINYDVGLDGLGVSLFTLTALI--FFTVFIWAIKVKEKPNLFYALFLI 115 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE+ +G F +LD+ LFY+F+E L+PM+ IIG WG +IYAA KFF+YTFFGS+F+L Sbjct: 116 LETTCLGTFSALDLFLFYLFWEGMLVPMYFIIGFWGHDRKIYAANKFFIYTFFGSLFLLL 175 Query: 181 AIVVMC-----WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 + M S D + +P +Q +++ F FA+K+PM+P HTWLP+A Sbjct: 176 GLATMIVYGYFISGHISFEYDFHRHIAYPLWLQIILFVLFGIGFAVKVPMWPVHTWLPDA 235 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+APTAGSV LAG++LKMG +G +R+ LPLFP AS+ F PV+F LS+IAIIYA+++++ Sbjct: 236 HVEAPTAGSVVLAGVLLKMGTFGFVRYSLPLFPQASKIFIPVMFVLSIIAIIYAAMMAIS 295 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QT+IKKLIAYSSI+HMG VT+G F+ S + GA + M++HGL S+ALF+ G IYDR H Sbjct: 296 QTNIKKLIAYSSISHMGMVTLGTFALSVSAINGASYMMIAHGLSSAALFYAAGFIYDRFH 355 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 + ++ GG+ +P +A++ M+ +A++GLPG SGF+ EFL+++ F+ A++A Sbjct: 356 SYEMSDLGGIAKYLPNFAILFMISGLASIGLPGFSGFVSEFLILLGTFKYFPMWAIVAGV 415 Query: 416 GVVLSALYSLWLYRKVVFGV-----SKCEKVQQLKDLSLRE 451 G+VL A Y L++Y+ V+ SK +K+Q DL L Sbjct: 416 GMVLGAAYFLYMYKNVMLESASLPESKIQKLQHTMDLELHH 456 >gi|307131803|ref|YP_003883819.1| NADH:ubiquinone oxidoreductase membrane subunit M [Dickeya dadantii 3937] gi|306529332|gb|ADM99262.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Dickeya dadantii 3937] Length = 511 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 175/431 (40%), Positives = 271/431 (62%), Gaps = 13/431 (3%) Query: 69 HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 +W+ F S HL +DG+S+L+VVLT L IL SW+ IQ + + L + VIG Sbjct: 70 NWVPRFGISIHLALDGLSLLMVVLTGLLGVLAILCSWREIQRYQGFFHLNLLWILGGVIG 129 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAI 182 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI Sbjct: 130 VFLAIDMFLFFFFWEMMLVPMYFLIALWGHKGSDGKTRIAAATKFFIYTQASGLVMLIAI 189 Query: 183 VVMCWEKKTSS---IIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + + ++ D + K P S ++Y + + FF +FA+K+P+ P H WLP+AH Sbjct: 190 LALVFAHHNATGEWTFDYSRLLKTPMSYGLEYALMLGFFIAFAVKMPVVPLHGWLPDAHS 249 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ QT Sbjct: 250 QAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHDFAPIAMWLGVIGIFYGAWMAFKQT 309 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIK+LIAY+S++HMG+V I I+SG + +GA+ QM++HGL ++ LF G +Y+RLHTR Sbjct: 310 DIKRLIAYTSVSHMGFVMIAIYSGSQLAYQGAVVQMIAHGLSAAGLFIICGQLYERLHTR 369 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 D+ GGL + + + F +A +G+PGT F+GEF+++ + + V+++FG+ Sbjct: 370 DLRQMGGLWGRIRYLPALSLFFAVATLGMPGTGNFVGEFMILFGSYPVVPVITVISTFGL 429 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 V +++YSL + ++ +G +K + L+ ++ RE ++ + VL V G+YP PI DT S Sbjct: 430 VFASVYSLVMMQRAFYGAAKSDA--PLQGMTARELSLILLLVVLLVLLGVYPQPILDTSS 487 Query: 478 VPLSSIIENYT 488 +++I + +T Sbjct: 488 AAMANIQQWFT 498 >gi|19483814|gb|AAL89575.1| NADH dehydrogenase I subunit M [Pseudomonas fluorescens] Length = 510 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 190/472 (40%), Positives = 288/472 (61%), Gaps = 27/472 (5%) Query: 36 VALGISTINFIFSLFVWSVFD------KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISIL 87 +AL ++ L++W+ D G +E+ H WI F S HL +DG+S+L Sbjct: 31 IALLTMSLELALGLWLWATGDYSFAPAPGADPTWALEFKHAWIARFGISVHLALDGLSLL 90 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 +++LT L +L SWK IQ + + + + + VIG FL+LD+ +F+ F+E L+P Sbjct: 91 MILLTGLLGILSVLCSWKEIQRHVGFFHLNLMWILGGVIGVFLALDLFMFFFFWEMMLVP 150 Query: 148 MFVIIGVWGGSE------RIYAAYKFFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA 199 M+ +I +WG S RIYAA KFF++T + ML AI+ V+ T I YA Sbjct: 151 MYFLIALWGHSSSDGKKTRIYAATKFFIFTQASGLIMLVAILGLVLVNFNNTGWITFNYA 210 Query: 200 ------MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 MSK + +Y + + FF +FA+K+P+ PFH+WLP+AH QAPTAGSV LAGI+LK Sbjct: 211 DLLKVQMSK---TTEYVLMLGFFIAFAVKLPVVPFHSWLPDAHAQAPTAGSVDLAGILLK 267 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 YG +RF LPLFP AS FAP+ L LI I Y + ++ QTDIK+LIA+SS++HMG+ Sbjct: 268 TAAYGLLRFALPLFPNASAEFAPIAMTLGLIGIFYGAFLAFAQTDIKRLIAFSSVSHMGF 327 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V IGI+SG + ++GA+ QML+HGL ++ALF G +Y+RLHTRD+ GG+ + Sbjct: 328 VLIGIYSGSQLALQGAVIQMLAHGLSAAALFILSGQLYERLHTRDMREMGGIWSRIAYLP 387 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 + + F A++GLPGT F+GEFL+++ F ++ + +A+ G+V ++YSL + + F Sbjct: 388 AISLFFAAASLGLPGTGNFVGEFLILIGTFASAPWITAIATSGLVFGSVYSLIMIHRAYF 447 Query: 434 GVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 G +K ++V L+ + RE MV +AVL V+ G+ P P DT + + + + Sbjct: 448 GPTKSDEV--LRGIHGRELIMVLGLAVLLVYLGVSPQPFLDTSAATMHGVQQ 497 >gi|283778522|ref|YP_003369277.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pirellula staleyi DSM 6068] gi|283436975|gb|ADB15417.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pirellula staleyi DSM 6068] Length = 600 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 184/457 (40%), Positives = 277/457 (60%), Gaps = 32/457 (7%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVF--DKGRSSFQMIEYY 68 FLP G ++ + LG F ALG++ + + V + F D + + + Sbjct: 10 FLPLAGAILMWILAPLGKNAVRFG--ALGVTLATLVCTAIVVASFPADGAKGAEFCTVDW 67 Query: 69 HWIDYFCS-----YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 W+ S + L +DG+ + + L+ L +L SW++I+E + L+LE Sbjct: 68 PWLAQSGSLLDIRFSLALDGLGLWMFGLSALLMVTAVLVSWEAIKEREALFFGMLLLLEF 127 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM---LF 180 +G F + D++LFY+FFE +LIP+F +IG+WG +R YAA KFFLYT GS+ L Sbjct: 128 GCLGVFTARDLILFYVFFEFTLIPLFFLIGIWGSEDRKYAASKFFLYTLAGSLLTFLGLL 187 Query: 181 AIVVMCWEKKTS-----SIIDLYAM---SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 IVV C++++ SI +L A + P + Q ++IA F FAIK+P+FP HTWL Sbjct: 188 VIVVWCYQQEGVGKLVFSIPELTATLRDAPLPPAWQLAVFIALFAGFAIKVPLFPLHTWL 247 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P AHVQAPTAGSV LAG++LK+G YG +RF +P+ P A+ P + +LS+I IIY +LV Sbjct: 248 PLAHVQAPTAGSVILAGVLLKIGVYGFLRFSVPMLPDATVTCMPYLLWLSVIGIIYGALV 307 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q D+K+LIAYSS++H+GY T+G+F+ GV+G++ QM++HGL + LF +G++Y+ Sbjct: 308 ALAQGDMKRLIAYSSVSHLGYCTLGLFALNPLGVQGSVLQMVNHGLSTGGLFAVIGMLYE 367 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------ 406 R HTR+I GGL P + M++FT +++GLPG +GF GEF++++ +FQ + Sbjct: 368 RYHTREIKQLGGLARQTPWLSFFMLIFTFSSIGLPGLNGFPGEFMILLGMFQRAWAQSSV 427 Query: 407 ------NTVAVLASFGVVLSALYSLWLYRKVVFGVSK 437 T+AVLA GVVL A Y LWL + V FG K Sbjct: 428 ENFSQLMTIAVLAVTGVVLGAWYMLWLVQHVFFGPLK 464 >gi|62161344|ref|YP_214972.1| NADH dehydrogenase subunit 4 [Montipora cactus] gi|58220709|gb|AAW67972.1| NADH dehydrogenase subunit 4 [Montipora cactus] Length = 491 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 204/476 (42%), Positives = 294/476 (61%), Gaps = 12/476 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V FL F+G ++ S + VAL S I L +W FD FQ+I Sbjct: 8 LSLVFFLLFMGGISVMKVSREDSVKLK--KVALEWSLAILISVLVLWGAFDL-EGQFQII 64 Query: 66 EYYHWI-DYFCSYHLG-----VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 WI ++ G +DG+S+ +LT L P CIL SWKSI+ F+E+++ L Sbjct: 65 NRIEWIVSPALNFQWGPGVFALDGVSLFFFILTALLIPICILISWKSIKHLFKEFLLCLL 124 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFM 178 LE++++G FL LD+LLFY+ FE LIPMF++IGVWG E++ A+Y FF YTF GS+FM Sbjct: 125 FLEALLVGVFLVLDLLLFYLLFEGILIPMFLLIGVWGSREEKVRASYYFFFYTFAGSVFM 184 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L + + T+ L + K P + Q W+ F S A+KIP PFH WLP AHV+ Sbjct: 185 LLGLFQIYSVTGTTDYQILLNI-KLPATTQKWVLAGIFLSLAVKIPQIPFHIWLPQAHVE 243 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP +GSV LAGI+LK+GGYG +RF P+ P AS+YFAP+I L ++AIIY L++ Q D Sbjct: 244 APVSGSVILAGILLKLGGYGFLRFSWPILPAASEYFAPLIVMLGVVAIIYGGLLTCRQVD 303 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 K++IAYSS+AHMG V +G+F+ G+ A+F ML+HG VSSALF + +Y+R HTR Sbjct: 304 FKRIIAYSSVAHMGLVPLGLFTHTIEGLVAAVFMMLAHGFVSSALFIAITYLYERHHTRL 363 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I Y G+ MP + +MMV +++NMG+P + F+GEF +++ + + + VLA+ G+V Sbjct: 364 IKYYRGVTLTMPVFVCIMMVLSLSNMGIPLSCNFVGEFFSLLAAVEYNFGLGVLATSGMV 423 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 SA YSL+LY ++ FG + + ++DL+ RE + P+ + FGI+P I D Sbjct: 424 WSAAYSLYLYNRISFGAAS-NYLLFIRDLNRRELLAISPLVIAVFLFGIFPFIIID 478 >gi|301058796|ref|ZP_07199782.1| proton-translocating NADH-quinone oxidoreductase, chain M [delta proteobacterium NaphS2] gi|300447081|gb|EFK10860.1| proton-translocating NADH-quinone oxidoreductase, chain M [delta proteobacterium NaphS2] Length = 517 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 166/417 (39%), Positives = 261/417 (62%), Gaps = 4/417 (0%) Query: 55 FDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 F+ G + FQ +E W+ D+ Y LGVDGIS+ +V LT + PFC++ SW SI+ +E Sbjct: 53 FEMGTADFQFVESVPWVTDWGLQYLLGVDGISLFMVALTLLIFPFCVICSWTSIKGRVKE 112 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 + ++ +L S +IG F +LD++LFY+F+EA LIP +++I +WGG+ R AA KF LYT Sbjct: 113 FHVSLFILVSALIGVFSALDLVLFYLFWEAVLIPTYLLIALWGGNGRDQAALKFILYTLA 172 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 GS +L AI+ E + +I L + S F F Q WM++ +FA+K+P+FPFH+W+P Sbjct: 173 GSALLLVAIIAFRVEGGSYAIPTLMSRS-FSFRFQQWMFVIMALAFAVKVPLFPFHSWMP 231 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 A+ +AP AGS+ L+ +M KMG YG +R LPL P A+QYFAP++ +S+ +I+Y L++ Sbjct: 232 GAYGEAPVAGSIILSAVMAKMGAYGFLRLGLPLTPDAAQYFAPLLIAMSICSILYGGLLA 291 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 Q+D+KK+IAYSS+ HMG+V +GIF +GV+GA+ QM +HG+ + +LF G +Y R Sbjct: 292 FAQSDLKKIIAYSSLGHMGFVVLGIFLFNLNGVQGALIQMFNHGITTGSLFAVAGFLYSR 351 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 + ++ GL +P + F A PGT+ F+GEFL++ F+ + + LA Sbjct: 352 SGSHNLSRTLGLGKFVPVFMGFWGFFVFAGFAFPGTNNFVGEFLILAGAFERNLWIGALA 411 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 G +L+A Y L +K+ +G + +D+ RE + P+A+L ++ G+ P Sbjct: 412 VPGALLAAAYMLRPTQKMAWG--EPATATGWRDMIPREWVSLVPMALLVLYLGLAPT 466 >gi|253989011|ref|YP_003040367.1| NADH dehydrogenase subunit M [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780461|emb|CAQ83623.1| nadh dehydrogenase i chain m (nadh-ubiquinone oxidoreductase chain m (nuo13) [Photorhabdus asymbiotica] Length = 506 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 174/457 (38%), Positives = 271/457 (59%), Gaps = 27/457 (5%) Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 +G +Q + WI F S HL +DG+S+L+VVLT L IL SW Q + Sbjct: 58 QGIPQWQSEFFMPWIPRFGISIHLALDGLSLLMVVLTALLGLMAILCSWTENQPYQGFFH 117 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLY 170 + L + V+G FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+Y Sbjct: 118 LNLLWILGGVMGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHRGSGGKTRITAATKFFIY 177 Query: 171 TFFGSIFMLFAIVVMC---------WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAI 221 T + ML AI+ + W +++ + ++QY + + FF +FA+ Sbjct: 178 TQASGLVMLIAIMALVLVHYNGTGEWTFSYEKLLN----TPMSHTVQYLLMLGFFIAFAV 233 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H WLP+AH QAPTAGSV LAGI+LK GYG +RF LPLFP AS F P+ +L Sbjct: 234 KMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAGYGLLRFGLPLFPEASHEFTPIAMWL 293 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 ++ I Y + ++ QTDIK+LIAY+SI+HMG+V I I+SG + +GA+ QM++HGL ++ Sbjct: 294 GVLGIFYGAWMAFSQTDIKRLIAYTSISHMGFVLIAIYSGSQLAYQGAIIQMIAHGLSAA 353 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 LF G +Y+RLHTRD+ GGL + + + F +A +G+PGT F+GEF+++ Sbjct: 354 GLFILCGQLYERLHTRDMNLMGGLWKRVQFLPALSLSFAVATLGMPGTGNFVGEFMILFG 413 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F + ++ FG+V +++Y+L++ ++ +G K + + L+ + +RE +V + +L Sbjct: 414 SFSEFPLIITISVFGLVFASVYALYMMQRAYYGTPKSD--EPLRRMDMREISIVMVLLIL 471 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSVK 498 V G YP PI DT + + ++ +T YS S+ Sbjct: 472 LVIMGFYPQPILDTSAAAMDNV------QTWYSASIS 502 >gi|164421214|ref|YP_001648667.1| NADH dehydrogenase subunit 4 [Igernella notabilis] gi|158939026|gb|ABW83947.1| NADH dehydrogenase subunit 4 [Igernella notabilis] Length = 478 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 178/398 (44%), Positives = 258/398 (64%), Gaps = 5/398 (1%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLD 133 F S + VDGISI V+LT FL C+L SW SI+ +E++I +E +++G F LD Sbjct: 70 FGSINFAVDGISIFFVILTAFLITICVLVSWDSIKYLIKEFLICLFCIEILLVGVFTILD 129 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM-CWEKKT 191 ++ FY+FFE LIPMF+IIG+WG E++ A+Y FF YTFFGS+FML I ++ W T Sbjct: 130 LIGFYLFFEGVLIPMFIIIGIWGAREEKVMASYYFFFYTFFGSVFMLLGIFMLYAWTGTT 189 Query: 192 SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + K IQY ++++FF S AIKIP PFH WLP AHV+AP AGSV LAGI+ Sbjct: 190 DY--QVLCSLKIDKKIQYILFLSFFLSLAIKIPKVPFHIWLPQAHVEAPVAGSVILAGIL 247 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IRF LFP+A++YF+P + L ++AIIY L + Q D+K++IAYSSI HM Sbjct: 248 LKLGGYGFIRFSWSLFPIAAEYFSPFLLTLGVLAIIYGGLSTCRQVDLKRIIAYSSITHM 307 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V IGIFS G+ GA++ ML+HG+VSS+LF V +Y+R HTR I Y G+V MP Sbjct: 308 GLVIIGIFSKNVMGLLGAIYLMLAHGVVSSSLFIIVTFLYERHHTRLIRYYRGMVITMPL 367 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + + +AN+ +P + FIGEF+ + + F S + + AS G+++S YS++L ++ Sbjct: 368 FSGALFLLIIANIAIPLSCNFIGEFICLFAAFDCSPIIGLCASMGIIISVGYSIYLXNRI 427 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 FG + + +DL+ RE ++ + + G++P Sbjct: 428 SFG-GPSQYLLYSRDLNRREAYILLLLISIIYLMGVFP 464 >gi|300723701|ref|YP_003713008.1| NADH dehydrogenase I subunit M, membrane subunit [Xenorhabdus nematophila ATCC 19061] gi|297630225|emb|CBJ90876.1| NADH dehydrogenase I chain M, membrane subunit [Xenorhabdus nematophila ATCC 19061] Length = 506 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 172/434 (39%), Positives = 264/434 (60%), Gaps = 21/434 (4%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S HL +DG+S+L+VVLT L IL SW Q + + L + V+G Sbjct: 71 WIPRFGISIHLALDGLSLLMVVLTALLGLMAILCSWNENQPYQGFFHLNLLWILGGVMGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++D+ LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDLFLFFFFWEVMLVPMYFLIALWGHRGSEGKTRITAATKFFIYTQASGLVMLIAIL 190 Query: 184 VMC---------WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + W ++++ + +++QY + + FF +FA+K+P+ P H WLP+ Sbjct: 191 ALAFVHHNATGEWSFNYETLLN----TPMSYTVQYLLMLGFFIAFAVKMPVVPLHGWLPD 246 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ Sbjct: 247 AHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPEASANFAPIAMWLGVIGIFYGAWMAF 306 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTDIK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ LF G +Y+RL Sbjct: 307 SQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERL 366 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 HTRD+ GGL + + + F +A +G+PGT F+GEF+++ F + + ++ Sbjct: 367 HTRDMRQMGGLWSRIQLLPAISLFFAVATLGMPGTGNFVGEFMILFGSFSHFTLITTVSV 426 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 FG+V +++Y+L+L +K +G K +K L + RE + + VL V G+YP PI D Sbjct: 427 FGLVFASVYALYLMQKAYYGTPKTDK--PLPQMDAREISTLLLLVVLLVLLGVYPQPILD 484 Query: 475 TFSVPLSSIIENYT 488 T + +S+I Y+ Sbjct: 485 TSAAAMSNIQNWYS 498 >gi|149280558|ref|ZP_01886674.1| NADH dehydrogenase I chain M [Pedobacter sp. BAL39] gi|149228673|gb|EDM34076.1| NADH dehydrogenase I chain M [Pedobacter sp. BAL39] Length = 488 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 175/473 (36%), Positives = 277/473 (58%), Gaps = 9/473 (1%) Query: 21 LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHL 79 L +++ G + VAL S + F +L S F + +S Q + WI D +H Sbjct: 17 LVTAFTGNAAKH---VALFFSVVTFAITLVAVSGF-RPDASTQFEVNFPWIQDLGIHFHA 72 Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 G+DGIS++ V+LTT L P ILSS++ ++ + + L ++ ++ F SLD LFYI Sbjct: 73 GIDGISMITVLLTTVLMPLIILSSYQHEYKSNQAFYALILFMQFGLLLVFTSLDAFLFYI 132 Query: 140 FFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA 199 +EA+LIP++ I +WGG +RI KFF+YT GS+FML I+ + + ++ +L A Sbjct: 133 GWEAALIPIYFICAIWGGKDRIRVNMKFFVYTIAGSLFMLLGIIYLYLQNPANNF-ELQA 191 Query: 200 MSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 Q W++ +FF +FAIK+P+FPFHTW P+ + +AP G++ L+GIMLKMG Y Sbjct: 192 FYNLNLDAVQQSWLFWSFFVAFAIKMPVFPFHTWQPDTYTEAPAPGTMLLSGIMLKMGIY 251 Query: 258 GCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 G IR+LLP+ P Q + + LS+I I+YASL++ Q D K+L+AYSSIAH+G ++ G Sbjct: 252 GVIRWLLPIAPEGVQQWGHFVIILSIIGILYASLIAFTQKDAKRLVAYSSIAHVGLISAG 311 Query: 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMM 377 IF+ G++GAM QMLSHG+ LFF + +I+ R+ T I GG+ P+ A+V + Sbjct: 312 IFALNTQGMQGAMIQMLSHGVNVVGLFFVLDIIFSRMKTNKIAELGGIAKQAPQLAIVFL 371 Query: 378 VFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSK 437 + + + LPGT+GFIGEF+++M V+Q +A ++ A+Y +Y+ V+ G + Sbjct: 372 IIVLGTVALPGTNGFIGEFMLLMGVYQYQAWAGAVAGLTIIFGAVYMFRMYQDVMLGKTN 431 Query: 438 CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 + D+ E+ ++Y I L + G+YP + + +I+ T K Sbjct: 432 DLTI-NFTDIKGSEKVVLYIICALIIVLGVYPKLVLHLSEAAVQQLIDQVTHK 483 >gi|56412786|ref|YP_149861.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|56127043|gb|AAV76549.1| NADH dehydrogenase I chain M [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Length = 509 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 190/509 (37%), Positives = 294/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYKATGVWTFNYEELLNTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +G + QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGVVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + Q+L +SLRE ++ Sbjct: 410 ILFGSYQVVPMITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT +S+I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQ 498 >gi|197249434|ref|YP_002147275.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213137|gb|ACH50534.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 509 Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 190/509 (37%), Positives = 294/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASNGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + +L +SLRE ++ Sbjct: 410 ILFGSYQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASVELPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT +S+I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQ 498 >gi|146312463|ref|YP_001177537.1| NADH dehydrogenase subunit M [Enterobacter sp. 638] gi|145319339|gb|ABP61486.1| NADH dehydrogenase subunit M [Enterobacter sp. 638] Length = 509 Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 175/428 (40%), Positives = 269/428 (62%), Gaps = 12/428 (2%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F + HL +DG+S+L+VVLT L +L SW+ I++ + + + + VIG Sbjct: 71 WIPRFGITIHLAIDGLSLLMVVLTGLLGVLAVLCSWREIEKYQGFFHLNLMWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ + + + K P S ++Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHHNATGVWTFNYEELLKTPMSHGVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ Q D Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMWLGVIGIFYGAWMAFTQYD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ LF G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + M F +A +G+PGT F+GEF+++ F+ + V+++FG+V Sbjct: 371 MRMMGGLWSKIKWLPALSMFFAVATLGMPGTGNFVGEFMILFGSFKVVPVITVVSTFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +++YSL + + FG +K E Q+L +SLRE +V + VL V G+YP PI DT Sbjct: 431 FASVYSLAMLHRAYFGKAKSEIAAQELPGMSLRELSIVLLLVVLLVLLGLYPQPILDTSH 490 Query: 478 VPLSSIIE 485 + +I + Sbjct: 491 SAMGNIQQ 498 >gi|16765644|ref|NP_461259.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167994665|ref|ZP_02575756.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242435|ref|ZP_02667367.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168465980|ref|ZP_02699850.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194451262|ref|YP_002046370.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197265254|ref|ZP_03165328.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|224583197|ref|YP_002636995.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|16420858|gb|AAL21218.1| NADH dehydrogenase I chain M [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194409566|gb|ACF69785.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195631431|gb|EDX49991.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197243509|gb|EDY26129.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205327483|gb|EDZ14247.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338373|gb|EDZ25137.1| NADH-quinone oxidoreductase, M subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224467724|gb|ACN45554.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247524|emb|CBG25351.1| NADH dehydrogenase I chain M [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994412|gb|ACY89297.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158875|emb|CBW18388.1| NADH dehydrogenase I chain M [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913308|dbj|BAJ37282.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222981|gb|EFX48052.1| NADH-ubiquinone oxidoreductase chain M [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130648|gb|ADX18078.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989250|gb|AEF08233.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 509 Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 190/509 (37%), Positives = 294/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + +L +SLRE ++ Sbjct: 410 ILFGSYQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASVELPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT +S+I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQ 498 >gi|330508777|ref|YP_004385205.1| F420H2 dehydrogenase subunit M [Methanosaeta concilii GP-6] gi|328929585|gb|AEB69387.1| F420H2 dehydrogenase, subunit M [Methanosaeta concilii GP-6] Length = 500 Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 179/470 (38%), Positives = 271/470 (57%), Gaps = 15/470 (3%) Query: 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISI 86 G ++ F VAL S + SL ++ FDK + Q +E Y+W+ Y LGVDGI Sbjct: 23 VGTKAKF-VALIASLAPLVLSLQMYMEFDKSSTMMQFVESYNWVPSIGVKYTLGVDGIGF 81 Query: 87 LLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLI 146 LV+L+T +T I+ SW ++ +Y L+ E V+G F +LD LFYIF+E LI Sbjct: 82 PLVLLSTIVTVLVIIYSWGETKKP-NQYFALLLLNEVGVLGVFTALDFFLFYIFWEIVLI 140 Query: 147 PMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE---KKTSSIIDLYAMSK- 202 PMF +IG WGG + YAA KFF+YT S+ ML AI + + S D+ + K Sbjct: 141 PMFFLIGSWGGPRKDYAAIKFFIYTHVASLVMLLAIFALYFTYQLPDGSRTFDMLTLLKA 200 Query: 203 ------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 FP ++ ++ F +K+P FPFHTWLP+AHV+APTAGSV LA ++LKMGG Sbjct: 201 TQNPEIFPPALLNIIFAGLLLGFLVKMPAFPFHTWLPDAHVEAPTAGSVVLAALLLKMGG 260 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 YG R ++P+ P + F +I +++++I+Y + +++ Q DIKKL+AYSS++HMG+VT+ Sbjct: 261 YGLFRIIVPMLPSVDKIFVTIIAIIAVLSIVYGAFLALAQKDIKKLVAYSSVSHMGFVTL 320 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 G + + ++GAMFQ SHG+++ LF G I + TR I GGL MP++AV+M Sbjct: 321 GAVALVPLSIQGAMFQQFSHGIITCVLFMSAGTIQHVVGTRIIADLGGLADRMPKFAVIM 380 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF-GVVLSALYSLWLYRKVVFGV 435 M MA++GLPG SGF+ EF+ + + ++ F +V++A Y LW +K +FG Sbjct: 381 MAGFMASLGLPGMSGFVAEFMTLTGAYATLPVYVMIVVFLSIVITAAYHLWAMQKAMFG- 439 Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 K + D E + I +LT+ FG+ P + D + +++ Sbjct: 440 PILRKYMDVHDPHAYELFSMSMIILLTLLFGLQPGLMTDMMGTAANQLLQ 489 >gi|271501257|ref|YP_003334282.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dickeya dadantii Ech586] gi|270344812|gb|ACZ77577.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dickeya dadantii Ech586] Length = 563 Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 176/431 (40%), Positives = 271/431 (62%), Gaps = 13/431 (3%) Query: 69 HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 +WI F S HL +DG+S+L+VVLT L IL SW+ IQ + + L + VIG Sbjct: 122 NWIPRFGISIHLALDGLSLLMVVLTGLLGVLAILCSWREIQRYQGFFHLNLLWILGGVIG 181 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAI 182 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI Sbjct: 182 VFLAIDMFLFFFFWEMMLVPMYFLIALWGHKGSDGKTRIAAATKFFIYTQASGLVMLIAI 241 Query: 183 VVMCWEKKTSS---IIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + + ++ D + K P S ++Y + + FF +FA+K+P+ P H WLP+AH Sbjct: 242 LALVFVHHNATGEWTFDYSRLLKTPMSYGLEYALMLGFFIAFAVKMPVVPLHGWLPDAHS 301 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ QT Sbjct: 302 QAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHDFAPIAMWLGIIGIFYGAWMAFKQT 361 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIK+LIAY+S++HMG+V I I+SG + +GA+ QM++HGL ++ LF G +Y+RLHTR Sbjct: 362 DIKRLIAYTSVSHMGFVMIAIYSGSQLAYQGAVVQMIAHGLSAAGLFIICGQMYERLHTR 421 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 D+ GGL + + + F +A +G+PGT F+GEF+++ + + V+++FG+ Sbjct: 422 DLRQMGGLWGRIRYLPALSLFFAVATLGMPGTGNFVGEFMILFGSYPVVPVITVISTFGL 481 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 V +++YSL + ++ +G +K + + L+ ++ RE ++ + VL V G+YP PI DT S Sbjct: 482 VFASVYSLVMMQRAFYGAAKSD--EPLQGMTARELSLILLLVVLLVLLGVYPQPILDTSS 539 Query: 478 VPLSSIIENYT 488 +++I +T Sbjct: 540 AAMANIQHWFT 550 >gi|325104665|ref|YP_004274319.1| NADH dehydrogenase subunit M [Pedobacter saltans DSM 12145] gi|324973513|gb|ADY52497.1| NADH dehydrogenase subunit M [Pedobacter saltans DSM 12145] Length = 529 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 189/526 (35%), Positives = 299/526 (56%), Gaps = 51/526 (9%) Query: 6 LSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR----- 59 LS++ F+P L G+ +++ S L ++F +++ +S I S +++ F G+ Sbjct: 4 LSLLIFIPLLVGIIIMILPSKL---DKNFKYISVAVSAFQLILSSYLYFNFKTGQAGVDQ 60 Query: 60 -SSFQMIEYYHWIDYFC--------SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN 110 S +Q E WI Y +GVDG SI LV LT + LSSW+ I N Sbjct: 61 LSGYQFTESLEWIRLNAGSFGTLQIDYFIGVDGFSITLVWLTALVMLIASLSSWE-ITTN 119 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + Y ++L + IG F +LD+ LFY+F+E L+P++ +IG+WGG R YAA KFFLY Sbjct: 120 KKGYFALLMLLNTATIGVFCALDIFLFYVFYELMLLPLYFLIGMWGGPRREYAAIKFFLY 179 Query: 171 TFFGSIFML-------FAIVVMCWEKKTSSIIDLYAMSKF-PFSI--------------Q 208 T GS+FML F++V T +++ + + + P SI + Sbjct: 180 TLIGSVFMLLVIAGLYFSVVDPVSGNHTFNMVHMMNPANYLPDSIFSVLSNTDILGIPAR 239 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 +I F +FAIK+P+FPFHTWLP+AHV+APT S+ LAGI+LK+GGYG IR +FP Sbjct: 240 TLAFIVVFIAFAIKVPVFPFHTWLPDAHVEAPTPISIILAGILLKVGGYGIIRIAYSIFP 299 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 + + + L +I+I+Y ++V++ Q D+K+LIAYSS++HMG+V +G+ S G+ G Sbjct: 300 EVATDLSFYVGLLGVISILYGAMVALAQADLKRLIAYSSVSHMGFVLLGLASMTPEGISG 359 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 AM QM+SHG +S +F+ VGVIY R+H R I+ + GL +MP+ + + A++GLPG Sbjct: 360 AMLQMISHGFLSVMMFYAVGVIYGRVHDRYIYNFRGLASHMPKLTFFVTIAFFASLGLPG 419 Query: 389 TSGFIGEFLVIMSVFQNSNT-------VAVLASFGVVLSALYSLWLYRKVVFGVSKCEK- 440 S FI E ++ F++ + +A+ + G++L A Y LW +++ FG + ++ Sbjct: 420 FSAFISEIFTLIGAFKSESINGFIPRWMAIGGALGILLGAAYLLWTLQRMFFGTLRLKEE 479 Query: 441 --VQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 + LKDL+ RE P+A+L + GI P + D + ++ I Sbjct: 480 SWLSALKDLNAREILTFTPLAILALVLGIMPSLVFDVINASVNQFI 525 >gi|170721046|ref|YP_001748734.1| NADH dehydrogenase subunit M [Pseudomonas putida W619] gi|169759049|gb|ACA72365.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pseudomonas putida W619] Length = 510 Score = 315 bits (808), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 185/435 (42%), Positives = 277/435 (63%), Gaps = 17/435 (3%) Query: 65 IEYY-HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +EY WI F S HL +DG+S+L+++LT L +L SWK IQ + + + + + Sbjct: 66 LEYKLEWIKRFGISIHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRHVGFFHLNLMWIL 125 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYKFFLYTFFGSI 176 V+G FL+LD+ LF+ F+E L+PM+ +I +WG S RIYAA KFF++T + Sbjct: 126 GGVVGVFLALDLFLFFFFWEMMLVPMYFLIALWGHSSADGKKTRIYAATKFFIFTQASGL 185 Query: 177 FMLFAIV-VMCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 ML AI+ ++ T+ ++ DL ++ P ++Y + + FF +FA+K+P+ PFH+ Sbjct: 186 IMLVAILGLVLVNYNTTGVLTFNYSDLLK-AELPAGVEYLLMLGFFIAFAVKLPVVPFHS 244 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L LI I Y + Sbjct: 245 WLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTLGLIGIFYGA 304 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++GA+ QML+HGL ++ALF G + Sbjct: 305 FLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGAVIQMLAHGLSAAALFILSGQL 364 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+RLHTRD+ GGL H + + + F A++GLPGT F+GEFL+++ F + + Sbjct: 365 YERLHTRDMRQMGGLWHRIAYLPAISLFFAAASLGLPGTGNFVGEFLILIGSFASVPWIT 424 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 V+A+ G+V ++YSL + + FG SK + V L + RE MV +AVL + G+YP Sbjct: 425 VIATTGLVFGSVYSLIMIHRAYFGPSKSDTV--LAGMDGRELIMVLGLAVLLIVLGVYPQ 482 Query: 471 PIRDTFSVPLSSIIE 485 P DT + +S + + Sbjct: 483 PFLDTSAATMSGVQQ 497 >gi|62161417|ref|YP_214920.1| NADH dehydrogenase subunit 4 [Anacropora matthai] gi|58220695|gb|AAW67959.1| NADH dehydrogenase subunit 4 [Anacropora matthai] Length = 491 Score = 315 bits (808), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 204/476 (42%), Positives = 293/476 (61%), Gaps = 12/476 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V FL F+G ++ S + VAL S I L +W FD FQ+I Sbjct: 8 LSLVFFLLFMGGISVMKVSREDSVKLK--KVALEWSLAILISVLVLWGAFDL-EGQFQII 64 Query: 66 EYYHWI-DYFCSYHLG-----VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 WI ++ G +DG+S+ +LT L P CIL SWKSI+ F+E+++ L Sbjct: 65 NRIEWIVSPALNFQWGPGVFALDGVSLFFFILTALLIPICILISWKSIKHLFKEFLLCLL 124 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFM 178 LE++++G FL LD+LLFY+ FE LIPMF++IGVWG E++ A+Y FF YTF GS+FM Sbjct: 125 FLEALLVGVFLVLDLLLFYLLFEGILIPMFLLIGVWGSREEKVRASYYFFFYTFAGSVFM 184 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 L + + T+ L + K P + Q W+ F S A+KIP PFH WLP AHV+ Sbjct: 185 LLGLFQIYSVTGTTDYQILLNI-KLPATTQKWVLAGIFLSLAVKIPQIPFHIWLPQAHVE 243 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP +GSV LAGI+LK+GGYG +RF P+ P AS+YFAP+I L ++AIIY L++ Q D Sbjct: 244 APVSGSVILAGILLKLGGYGFLRFSWPILPAASEYFAPLIVMLGVVAIIYGGLLTCRQVD 303 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 K+LIAYSS+AHMG V +G+F+ G+ A+F ML+HG VSSA F + +Y+R HTR Sbjct: 304 FKRLIAYSSVAHMGLVPLGLFTHTIEGLVSAVFMMLAHGFVSSAFFIAITYLYERHHTRL 363 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I Y G+ MP + +MMV +++NMG+P + F+GEF +++ + + + VLA+ G+V Sbjct: 364 IKYYRGVTLTMPVFVCIMMVLSLSNMGIPLSCNFVGEFFSLLAAVEYNFGLGVLATSGMV 423 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 SA YSL+LY ++ FG + + ++DL+ RE + P+ + FGI+P I D Sbjct: 424 WSAAYSLYLYNRISFGAAS-NYLLFIRDLNRRELLAISPLVIAVFLFGIFPFIIID 478 >gi|242239957|ref|YP_002988138.1| NADH dehydrogenase subunit M [Dickeya dadantii Ech703] gi|242132014|gb|ACS86316.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dickeya dadantii Ech703] Length = 511 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 175/430 (40%), Positives = 268/430 (62%), Gaps = 13/430 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S HL +DG+S+L+VVLT L IL SW IQ + + L + VIG Sbjct: 71 WIPRFGISTHLALDGLSLLMVVLTGLLGVLAILCSWNEIQRYQGFFHLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML +I+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKGSDGKTRIAAATKFFIYTQASGLVMLISIL 190 Query: 184 VMCWEKKTSS---IIDLYAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ D + K P F ++Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 ALVFVHHNATGEWSFDYQQLLKTPMSFGLEYALMLGFFVAFAVKMPLVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAPV + +I I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHAFAPVAMWFGVIGIFYGAWMAFKQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVMIAIYTGNQLAYQGAVVQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ +Q + V+++FG+V Sbjct: 371 MRQMGGLWSRIRYLPALSLFFAVATLGMPGTGNFVGEFMILFGSYQIVPVITVVSTFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G K ++ L +S RE ++ + VL V G+YP PI DT S Sbjct: 431 FASVYSLIMMQRAFYGAPKSDEA--LAGMSPRELSLILLLVVLLVLLGVYPQPILDTSSA 488 Query: 479 PLSSIIENYT 488 +++I + +T Sbjct: 489 AMTNIQQWFT 498 >gi|146307446|ref|YP_001187911.1| NADH dehydrogenase subunit M [Pseudomonas mendocina ymp] gi|145575647|gb|ABP85179.1| NADH dehydrogenase subunit M [Pseudomonas mendocina ymp] Length = 509 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 175/420 (41%), Positives = 263/420 (62%), Gaps = 12/420 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 + HL +DG+S+L+VVLT L +L SW IQ + + + + V+G FL++D+ Sbjct: 79 TIHLAMDGLSVLMVVLTGLLGVLSVLCSWNEIQHRVGFFHLNLMWILGGVVGVFLAVDLF 138 Query: 136 LFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV--VMCWE 188 LF+ F+E L+PM+ +I +WG G RI AA KFF++T + ML AI+ V+ Sbjct: 139 LFFFFWEMMLVPMYFLIALWGHSGSDGRTRITAATKFFIFTQASGLIMLVAILALVLVHF 198 Query: 189 KKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 +T + YA ++ +Y + + FF +FA+K P+ P H+WLP+AH QAPTAGSV Sbjct: 199 NQTGVLTFNYADLLQTELAPGTEYLLMLGFFIAFAVKFPVVPVHSWLPDAHAQAPTAGSV 258 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LAGI+LK YG +RF LPLFP AS FAP+ +L + AIIY +L+S QTDIK+L+AY Sbjct: 259 DLAGILLKTAAYGLLRFALPLFPNASAEFAPIAQWLGVFAIIYGALLSFAQTDIKRLVAY 318 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG+V I I+SG + ++GA+ QM++HGL ++ALF G +Y+RLHTRD+ GG+ Sbjct: 319 SSVSHMGFVLIAIYSGSQIALQGAVVQMVAHGLSAAALFILCGQLYERLHTRDLRQMGGI 378 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 MP + + F A +GLPGT F+GEFL+++ F + V V+A+ G+VL ++Y+L Sbjct: 379 WARMPWLPAISLFFAAAALGLPGTGNFVGEFLILIGSFPGAPWVVVIAATGLVLGSVYAL 438 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + + FG ++ L L RE MV +AVL + G+YP P+ DT + + + + Sbjct: 439 AMIHRAYFG--PVQQDAPLPGLKPRELSMVLGLAVLLILLGVYPQPVLDTSAASMHGVQQ 496 >gi|161612955|ref|YP_001586920.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362319|gb|ABX66087.1| hypothetical protein SPAB_00661 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 509 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 189/509 (37%), Positives = 293/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYKATGVWTFNYEELLNTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + +L +SLRE ++ Sbjct: 410 ILFGSYQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASVELPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL G YP PI DT +S+I + Sbjct: 470 LLVVLLALLGFYPQPILDTSHSAMSNIQQ 498 >gi|322378671|ref|ZP_08053104.1| NADH oxidoreductase I (NuoM) [Helicobacter suis HS1] gi|321148888|gb|EFX43355.1| NADH oxidoreductase I (NuoM) [Helicobacter suis HS1] Length = 499 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 179/434 (41%), Positives = 274/434 (63%), Gaps = 19/434 (4%) Query: 52 WSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN 110 W+VFDK Q E + +YH+GVDGIS+ L++LT F+ +LS + + E+ Sbjct: 51 WAVFDKQTGMMQFEESVELLKLMGINYHVGVDGISLFLILLTAFVI--FLLSLY--VTEH 106 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 ++ +I FL+LE +++G F +L+++ FY+F+EASL+P +IG +G ++IY+A KFFLY Sbjct: 107 AKDMLICFLLLEGILMGVFSALNLIFFYVFWEASLLPALYLIGRFGVKDKIYSALKFFLY 166 Query: 171 TFFGSIFMLFAIVVMC-----------WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF 219 TFF S+FML I+ W+ ++ + + P + W++ A F Sbjct: 167 TFFASLFMLLGIIYYAHSCLTFSGNPYWDFDLNTFSQVIPAQELPGNAYLWVFGALFLGI 226 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 A+KIP+FPFH+WLP A+ AP AGS L+ ++LKMG Y +RFLLPLFP A Y + Sbjct: 227 AVKIPIFPFHSWLPYAYGNAPVAGSALLSALLLKMGTYAVVRFLLPLFPNAVLYLLLPLS 286 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 LSL +IYA +++ Q ++K+L+AYSS++HMG +G+++ GV GA+F M SHGLV Sbjct: 287 TLSLFMVIYAGILACAQREMKRLVAYSSMSHMGVALLGLYALNTEGVGGAIFTMFSHGLV 346 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 S+ LF +G++YDR + I A+ GL MP YA M+ +AN+G+P TSGF+GEFL + Sbjct: 347 SAGLFMLIGMLYDRSRSTKIVAFKGLAQTMPAYATFFMIILLANVGMPLTSGFVGEFLSL 406 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV-SKCEKVQQLKDLSLRERCMVYPI 458 + F+ S A+LA ++LSA+Y L LY+KV +G+ ++C VQ KD+ RE+ ++ + Sbjct: 407 LGFFKISPLFALLAGTTIILSAIYMLVLYKKVFYGLPNRC--VQAFKDICWREKSIMACL 464 Query: 459 AVLTVFFGIYPVPI 472 +F GIYP P+ Sbjct: 465 VAAILFLGIYPKPL 478 >gi|297585408|ref|YP_003701188.1| proton-translocating NADH-quinone oxidoreductase subunit M [Bacillus selenitireducens MLS10] gi|297143865|gb|ADI00623.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacillus selenitireducens MLS10] Length = 512 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 191/475 (40%), Positives = 289/475 (60%), Gaps = 31/475 (6%) Query: 40 ISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF------CSYHLGVDGISILLVVLTT 93 IS + SL +W FD+ S Q + Y I++F ++ +GVDG+S+ L+VLTT Sbjct: 38 ISGAVLVLSLIIWGSFDRTISGMQP-DMYTVIEWFNIGFLQINFEIGVDGLSMPLIVLTT 96 Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 +T F + +S+ SI++ +E+ I LVL + ++G F++LDM LF++FFE +LIPMF +IG Sbjct: 97 IVTTFALFASF-SIEKRVKEFYIWTLVLLAGMLGVFVALDMFLFFLFFELTLIPMFFLIG 155 Query: 154 VWGGSERIYAAYKFFLYTFFGSIFMLFAIVV--------MCWEKKTSSIIDLYAMSKFPF 205 +WGG R YA++KF +YT GS M + M +++ + SI+ L + P Sbjct: 156 IWGGKLREYASFKFLVYTGLGSGIMFLTFIAIFVKGAEAMMFQETSFSIVRLAEIYANPM 215 Query: 206 -------SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 S++ M+I F +FAIK+P+FPFHTWLPNAHVQAPTA S+ LAG++LKMG YG Sbjct: 216 VPEVLTGSVKGAMFIFLFIAFAIKLPVFPFHTWLPNAHVQAPTAASMILAGVLLKMGAYG 275 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 IR + P + FA +I L ++ IIY +L+++VQTD+K L+AYSSI+HMG V +G+ Sbjct: 276 LIRVGFGILPDQAARFATLIAILGVVNIIYGALLALVQTDLKSLVAYSSISHMGIVLLGV 335 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 S ++G++GA+FQ++SHG +S+ LFF VG IY+R TR I GGL ++P A M+ Sbjct: 336 ASFTEAGMQGAIFQLVSHGFISALLFFMVGAIYERTKTRTISELGGLSKSVPILAGFMLA 395 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNS-------NTVAVLASFGVVLSALYSLWLYRKV 431 MA++GLPG SGF+ E L + +F S + V+A+ G++L+A Y LW ++ Sbjct: 396 AAMASVGLPGLSGFVSELLAFIGIFGASADVIPAATAIGVVAALGIILTAAYLLWAMQRT 455 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 FG EK LKD E + + V + G+YP + D + + ++ Sbjct: 456 TFG-PMNEKYAGLKDARPMEYVPMVGLFVFIILIGVYPYILSDVINTTVIDLVSK 509 >gi|240266712|ref|YP_002970788.1| NADH dehydrogenase subunit 4 [Trichophyton rubrum] gi|237781080|gb|ACR19574.1| NADH dehydrogenase subunit 4 [Trichophyton rubrum] Length = 487 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 190/482 (39%), Positives = 290/482 (60%), Gaps = 11/482 (2%) Query: 12 LPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI--EYYH 69 +P +G+F I+FS+ + L IN I S+ ++ +FD FQ I E + Sbjct: 10 IPLIGIFFIIFSASYQQSNNQIKTIGLTTLIINLILSMIIFILFDFSSKQFQYIQLEEIY 69 Query: 70 WIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENFREYMIAFLVLESMVIGA 128 I YF Y LG+DGISI ++LTT + P ++++W SI +N ++I L+LE++++ Sbjct: 70 KISYFDLY-LGIDGISIYFLLLTTMIMPISLVANWNSIDSKNVLSFVIIILLLETLLLAV 128 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 FL LD+LLFYIFFE+ L P+F++IG++G S+++ A++ FLYT GS+FML +I+ M Sbjct: 129 FLVLDILLFYIFFESILPPLFLLIGLFGSSDKVRASFYLFLYTLLGSLFMLLSIITMSSI 188 Query: 189 KKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + D A+SK FS Q +++ F SFA+K P +TWL AHV++P AGS+ Sbjct: 189 MGAT---DFDALSKANFSYITQLFLFYGIFISFAVKTPTIFLNTWLLKAHVESPLAGSII 245 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAGI+LK+ YG R +LPL P AS + +++ + +I I+YAS ++ DIK+LIAYS Sbjct: 246 LAGIVLKLSLYGIFRLILPLLPKASMDYTYIVYVIGVITILYASFSTLRTIDIKELIAYS 305 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGL 365 S++H + FS G+EGA+ L+HG VSS LF CV G++YDR TR I Y G+ Sbjct: 306 SVSHAAVYLLSAFSNTIQGIEGAIALGLAHGFVSSGLFICVGGILYDRSSTRLITYYRGM 365 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 MP + ++ + ++ N G P T FIGEF+ + +F+ + + VLAS +V SA Y++ Sbjct: 366 AQLMPIFCILFYILSLGNCGSPLTLNFIGEFMSLYGIFERISVLGVLASTSIVFSAAYTI 425 Query: 426 WLYRKVVFGVSKCEK-VQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 +++ ++ FG +KDLS RE ++ + V VFFGIYP I D +S +I Sbjct: 426 FMFNRIAFGGQFSSYFFNYVKDLSKREFILLISLVVPAVFFGIYPAVILDGLHYSVSGLI 485 Query: 485 EN 486 N Sbjct: 486 YN 487 >gi|124359032|ref|YP_001023832.1| NADH dehydrogenase subunit 4 [Placozoan sp. BZ2423] gi|114177245|gb|ABI53796.1| NADH dehydrogenase subunit 4 [Placozoan sp. BZ2423] Length = 506 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 184/491 (37%), Positives = 280/491 (57%), Gaps = 21/491 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILF-----------SSYLGCGRRSFFGVALGISTINFIFSL 49 MN S++ F P +GVF +L ++ + G +AL S I+ I ++ Sbjct: 1 MNWVLSSLLFFPPLMGVFHLLTAPNQRFARPAPTARIPSGTSDPKRIALFWSFISLISTI 60 Query: 50 FVWSVFDK--GRSSFQMIEYYHWIDYFCSYHLG------VDGISILLVVLTTFLTPFCIL 101 +W D+ G + I++ + +G VDGISI ++LT F+ P IL Sbjct: 61 VLWLSLDQEGGFTPLMDIDWIEGPEKIIPIIMGGPLVFAVDGISIYFIILTGFIVPCSIL 120 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SER 160 SW S++ + ++I L+LE ++ F LD+ +FYI FE LIPM++I+G+WG E+ Sbjct: 121 ISWHSVKYLTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGIWGSREEK 180 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK-FPFSIQYWMWIAFFCSF 219 + AAY FF YT GS+ ML + + T+ I L + S Q W+++ F + Sbjct: 181 MQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYITLASCSHVISGQTQKWIFLGIFLAM 240 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 A+KIP+FPFH WLP AHV+AP AGSV LAGI+LK+GGYG +R P+ PL +Q AP + Sbjct: 241 AVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQNLAPAVI 300 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 + ++ I+Y S + Q D+K+L+AYSS+AHMG V+I + + G+ G++F ML+HG+V Sbjct: 301 AMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSIALVTHDIIGLTGSIFIMLAHGIV 360 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 SS LF V ++YDR HTR I Y GL MP + +M+V ++AN+ +P + FIGE+L I Sbjct: 361 SSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPTSGNFIGEYLSI 420 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIA 459 +S F + + V GV+LSA+YS + +V FG +D++ RE + + Sbjct: 421 LSSFHWNPIIGVFVCTGVILSAVYSFYFANRVTFGAPGNLVSPAGRDVNRREFYITASMV 480 Query: 460 VLTVFFGIYPV 470 GIYP+ Sbjct: 481 FFAFLIGIYPI 491 >gi|304413382|ref|ZP_07394855.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Candidatus Regiella insecticola LSR1] gi|304284225|gb|EFL92618.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Candidatus Regiella insecticola LSR1] Length = 513 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 176/453 (38%), Positives = 270/453 (59%), Gaps = 19/453 (4%) Query: 53 SVFDKGRSSFQMIEYYH------WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 SVF +G + I + WI F +HL +DG+S L+V+LT L IL SW Sbjct: 54 SVFTEGLTDTADIPQWQAEFTLPWIPSFGIEFHLALDGLSWLMVMLTGLLGLLAILCSWC 113 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSER 160 IQ N + + L + VIG FL++D+ LF++F+E L+PM+ +I +WG G R Sbjct: 114 EIQRNLGFFHLNLLWILGAVIGVFLAMDLFLFFLFWEMMLVPMYFLIALWGHKASSGQSR 173 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAF 215 I A KFF+YT + ML AI+ + ++ + +L + I+Y + + F Sbjct: 174 ITTATKFFIYTQASGLIMLIAIIGLVLVHYQTTEVWTFNYNLLLQTPMSPQIEYLLMLGF 233 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 F +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS F+ Sbjct: 234 FIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFGLPLFPQASHDFS 293 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 P+ +I I Y + ++ QTDIK+LIAY+S++HMG+V I I+SG + +GA+ QM++ Sbjct: 294 PIAMGFGVIGIFYGAWLAFCQTDIKRLIAYTSVSHMGFVLIAIYSGSQLAYQGAVIQMIA 353 Query: 336 HGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGE 395 HGL ++ LF G +Y+RLHTRDI GGL + + + F MA +G+PGT F+GE Sbjct: 354 HGLSAAGLFILCGQLYERLHTRDIRQMGGLWSRIQYLPALSLFFAMATLGIPGTGNFVGE 413 Query: 396 FLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 F+++ FQ + + V+A+FG+V +++YSL + ++ +G +K L +++RE ++ Sbjct: 414 FMILCGSFQVAPLITVIATFGLVFASVYSLVMIQRAYYGEAKSPHA--LPSMTMRELSII 471 Query: 456 YPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 + L + GIYP PI DT ++ I + + Sbjct: 472 LLLVTLLILLGIYPQPILDTSDAVMTKIQQRFA 504 >gi|281428811|ref|YP_003354990.1| NADH dehydrogenase subunit 4 [Pneumocystis carinii] gi|270486328|gb|ACZ82951.1| NADH dehydrogenase subunit 4 [Pneumocystis carinii] Length = 476 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 173/453 (38%), Positives = 278/453 (61%), Gaps = 12/453 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 + L S I SL +W D+ Y+ + + DG+SI ++LTTF+ Sbjct: 31 IGLASSLITLWISLMLWMYLDESNVLILSANPYYPLVFVS------DGLSIFFILLTTFI 84 Query: 96 TPFCILSSWKSIQE---NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 TP +LS+W ++++ + + Y + +++E +++ F D+LLFYIFFEA L P+F++I Sbjct: 85 TPIALLSNWSNLEKESLSIKYYTVLIILVEFLLLLVFTVTDLLLFYIFFEAILPPLFMLI 144 Query: 153 GVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMW 212 G++G +I A++ FLYTF GS+FML + + + W T++I+ L +S IQ +W Sbjct: 145 GLYGSQRKIKASFYLFLYTFLGSLFMLLSFLGIYWVTGTTNILLLKDLS-ITIPIQKILW 203 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 I F +FAIK P+ P H WLP AH ++P GSV LAGI+LK+ YG +R L+P+ P AS Sbjct: 204 IGIFFAFAIKTPLVPLHLWLPLAHAESPLGGSVLLAGIVLKLSFYGVLRILIPILPEASL 263 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 Y+ P ++ + +I IIY+SL ++ Q D+K +IAYSS+ HM +G FS G+EG++ Sbjct: 264 YYTPWVYTICVITIIYSSLTTLRQIDLKVIIAYSSVGHMAICILGAFSNNLEGIEGSVLL 323 Query: 333 MLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 ++HGLVS ALF CV G++YD HTR + Y GLV MP ++V+ + T++N+ +P T+ Sbjct: 324 AIAHGLVSPALFICVGGILYDWTHTRVLNYYRGLVCYMPLFSVIFFLLTLSNIAVPFTAN 383 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 F+GE +++ FQ +A+L S ++LSA Y++WLY +++G S + L D++ RE Sbjct: 384 FLGELMILSGSFQRMPILAILCSSSIILSASYAIWLYIWIIYG-SYSPYLSVLSDVTRRE 442 Query: 452 RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 +V P+ LT+ G+ P + D P++ I+ Sbjct: 443 VYLVVPLLALTILLGVRPDIVLDVLHYPVTRIL 475 >gi|322831995|ref|YP_004212022.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rahnella sp. Y9602] gi|321167196|gb|ADW72895.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rahnella sp. Y9602] Length = 509 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 173/425 (40%), Positives = 268/425 (63%), Gaps = 13/425 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S+HL +DG+S+L+VVLT L IL SW+ IQ+ + + L + VIG Sbjct: 71 WIPRFGISFHLALDGLSLLMVVLTGLLGVLAILCSWREIQKYQGFFHLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRISAATKFFIYTQSSGLVMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ + + + K P S ++Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHYNATGVWTFNYADLLKTPMSHGVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGMLRFCLPLFPEASHQFAPIAMWLGVIGIFYGAWMAFCQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF ++ + + V+++FG+V Sbjct: 371 MRQMGGLWGRIKYLPALSLFFAVATLGMPGTGNFVGEFQILFGSYPVVPVITVISTFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G +K + + L ++ RE ++ + VL V G YP PI DT S Sbjct: 431 FASVYSLVMMQRAYYGKAKSD--EPLPGMTSRELSIILLLVVLLVALGFYPQPILDTSSA 488 Query: 479 PLSSI 483 +S+I Sbjct: 489 AMSNI 493 >gi|62180887|ref|YP_217304.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128520|gb|AAX66223.1| NADH dehydrogenase I chain M [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715366|gb|EFZ06937.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 509 Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 190/509 (37%), Positives = 293/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGVWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + +L +SLRE ++ Sbjct: 410 ILFGSYQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASVELPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT +S+I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQ 498 >gi|329298009|ref|ZP_08255345.1| NADH:ubiquinone oxidoreductase subunit M [Plautia stali symbiont] Length = 506 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 191/505 (37%), Positives = 301/505 (59%), Gaps = 24/505 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWS------V 54 M LP+L I+ PF+G + + LG + +AL + L +W Sbjct: 1 MLLPWLIII---PFVGGLLCWLAERLGAKVPRW--IALITMGLTLALGLQLWLQGGYSLT 55 Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 G +Q WI F ++HL +DG+S+L+VVLT L +L SW I++ Sbjct: 56 QAAGLPQWQSTFLVSWIPRFGINFHLALDGLSLLMVVLTGLLGLMAVLCSWNEIEKYQGF 115 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFF 168 + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF Sbjct: 116 FHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRISAATKFF 175 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA---MSKFPFS--IQYWMWIAFFCSFAIKI 223 +YT + ML AI+ + + ++ + ++ + K P S ++Y + + FF +FA+K+ Sbjct: 176 IYTQASGLVMLIAILALVFVHYNATGVWTFSYEELLKTPMSHTVEYLLMLGFFIAFAVKM 235 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L + Sbjct: 236 PVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAIWLGI 295 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 I I Y + ++ QTDIK+LIAY+SI+HMG+V I I++G + +GA+ QM++HGL ++AL Sbjct: 296 IGIFYGAWMAFSQTDIKRLIAYTSISHMGFVLIAIYTGSQLAFQGAVVQMIAHGLSAAAL 355 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 F G +Y+RLHTRD+ GGL + + + F +AN+G+PG+ F+GEF+++ + Sbjct: 356 FILCGQLYERLHTRDMRQMGGLWSRIKWIPGLSLFFAVANLGMPGSGNFVGEFMILTGSY 415 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 Q + V+A+FG+V +++YSL + ++ +G +K + + L +S RE ++ + VL V Sbjct: 416 QVVPLIIVIATFGLVFASVYSLIMMQRAYYGEAKSK--EPLAGMSPREFLIIGVLVVLLV 473 Query: 464 FFGIYPVPIRDTFSVPLSSIIENYT 488 G+YP PI DT +S+I + +T Sbjct: 474 LLGVYPQPILDTSHAAMSNIQQWFT 498 >gi|289606475|emb|CBI61318.1| putative NADH dehydrogenase subunit 4 [Sordaria macrospora] Length = 448 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 185/445 (41%), Positives = 279/445 (62%), Gaps = 5/445 (1%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 SL V+ +FD + FQ I+ ++ + ++ Y LGVDGISI V+LTT + P ++S+W SI Sbjct: 3 SLLVYILFDFSNNQFQFIQEHYDLSFYDIY-LGVDGISIYFVLLTTIIIPIALMSNWNSI 61 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKF 167 N + Y+I L+LE++++ FL LD+LLFYIFFE+ L P+F++IG++G S ++ A++ Sbjct: 62 TNNLKSYLIIMLLLETLLLAVFLVLDILLFYIFFESILPPLFILIGLFGSSNKVRASFYI 121 Query: 168 FLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFP 227 FLYT GS+F+L +I+ M T+ D S F ++IQ +++ F +FA+K P Sbjct: 122 FLYTL-GSLFLLLSILTMSSIMGTTYF-DALLKSNFDYTIQIFLFCGIFIAFAVKTPTIF 179 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 + WL AHV++P GS+ LAGI+LK+ YG R +LPL P AS + +IF + +I II Sbjct: 180 LNNWLLKAHVESPLGGSIVLAGIVLKLSLYGIFRLILPLLPKASLNYTYIIFVIGVITII 239 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 YAS ++ TDIK+LIAYSS++H IG+FS G+EG + L+HG S ALFF V Sbjct: 240 YASFSTLRTTDIKELIAYSSVSHAAVYLIGVFSNTIQGIEGGILLGLAHGFTSPALFFIV 299 Query: 348 -GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 GV+YDR TR I Y G+ P +++ +F++AN G+P T F+GEF+ + VF+ Sbjct: 300 GGVLYDRSGTRLIHYYKGIAQMAPLLSLLFFIFSLANCGVPLTLNFVGEFMSLYGVFERL 359 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFF 465 + +LAS +V SA YS++L+ +V FG S + + + DL+ RE + + +L VF Sbjct: 360 PLLGLLASSSIVFSAAYSIFLFNRVAFGGSFSKFFENSIIDLTKREFYALIFLGILVVFL 419 Query: 466 GIYPVPIRDTFSVPLSSIIENYTLK 490 GIYP I D +SS+I +Y K Sbjct: 420 GIYPSIILDGLHYNVSSLIYSYGCK 444 >gi|45658585|ref|YP_002671.1| NADH dehydrogenase I subunit M [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601829|gb|AAS71308.1| NADH dehydrogenase I M subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 562 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 176/507 (34%), Positives = 306/507 (60%), Gaps = 21/507 (4%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 M+ P LS+ FLPF+GV ++ S+ + R +A + + F+ + ++ +D Sbjct: 1 MDFPPYILSVFLFLPFIGVPLLFLSNKVNWLRF----IAGSFTLLPFLIIVGLYFKYDPT 56 Query: 59 RSSFQMIEYYHWI----DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 SS Q ++ I + YH+G+DG S+LL +++ L L++W SI RE+ Sbjct: 57 NSSLQFVDRIWGIIVSGNLKVDYHIGLDGFSLLLCGMSSLLFFLSTLATWTSITNRIREF 116 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 + +++E V G FLS +++LFYIF+EA + PM +++G+WG +R+ AA K+ +++F G Sbjct: 117 YVYLMIVEMSVHGVFLSGNLVLFYIFWEAMVSPMVLMVGIWGEDQRVKAAIKYLIFSFTG 176 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 S+ ML I+++ ++ T I +L + + P +I+ +M+ AF +FAIK+P+FP HTW+ Sbjct: 177 SVLMLAGILILYFKTGTIVIEELSTGLLPEIPKNIRLFMFFAFVLAFAIKVPLFPLHTWM 236 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+ H QAPT GSV L+GI+LK+G YG IR +PLFP + ++ L + IIY +++ Sbjct: 237 PDVHSQAPTVGSVDLSGILLKIGLYGFIRLAIPLFPEEMLEYRELLGALCIAGIIYGAVI 296 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 +M Q + K+++A+SS++HM + +GI S + G+ G M QML+HG + LFF +G++++ Sbjct: 297 AMAQENSKRVVAFSSLSHMSFCMLGILSFTEEGMAGGMLQMLNHGFTAGMLFFMLGMLHE 356 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+ DI GGL +P ++V + +++G+PGT+ FIGEFL+I+ + + L Sbjct: 357 RIGNNDISKAGGLSKLLPVFSVFFAIAIFSSLGVPGTNSFIGEFLIILGSIKANVVYGAL 416 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP- 471 A+ GVV +A Y L ++++FG + + + DL+L+E ++ P ++ + GIYP P Sbjct: 417 AATGVVFAAGYLLLFAKRMIFG-EPTKNLIEHNDLNLKEWVILVPTVIMIFWIGIYPKPF 475 Query: 472 ---IRDTFSVPLSS----IIENYTLKT 491 + + V L+S +IE+ + KT Sbjct: 476 LKVLEPSVKVALNSASAKVIEDRSKKT 502 >gi|284051063|ref|ZP_06381273.1| NAD(P)H-quinone oxidoreductase subunit 4 [Arthrospira platensis str. Paraca] gi|291571139|dbj|BAI93411.1| NADH dehydrogenase subunit 4 [Arthrospira platensis NIES-39] Length = 541 Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 182/496 (36%), Positives = 291/496 (58%), Gaps = 29/496 (5%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 +P+L+ + P L F I L G R + ALG+ I+ + ++ W+ ++ Sbjct: 4 QIPWLTAIILFPLLASFAIPLIPDREGKTIRWY---ALGVGLIDLVLTIVCFWTNYNLND 60 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S+FQ+ E Y WI ++ + VDG+S+ L+VLT F+ IL+SW+ + R + Sbjct: 61 STFQLAETYSWIPQLGLNWSVAVDGLSMPLIVLTGFVNTLAILASWR-VTNKPRLFYFLL 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LVL S +G F + D+LLF++ +E L+P++++I +WGG++R+YAA KF LYT GSIF+ Sbjct: 120 LVLYSAQMGVFAAQDLLLFFLMWELELVPVYILISIWGGAKRLYAATKFILYTALGSIFI 179 Query: 179 LFAIVVMC-WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L A + M + S I A +P +++ +++ F +FA+K+P+FP HTWLP+AH Sbjct: 180 LVAALAMAFYGSNLSFDISTLAHKNYPLALELFLYAGFLIAFAVKLPIFPLHTWLPDAHS 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A S+ LAG++LKMGGYG IR + + P A YFAP++ L ++ I+Y +L + Q Sbjct: 240 EASAPVSMILAGVLLKMGGYGLIRMNMEMLPNAHLYFAPILAILGVVNIVYGALSAFAQD 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ +A SSI+HMG+V +GI S + G+ GA+ QM+SHGL+++ LFF GV Y+R HT Sbjct: 300 NLKRRLACSSISHMGFVLLGIASLTELGLNGAVLQMISHGLIAAMLFFLAGVTYERTHTL 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ----NSN---TVA 410 + GG+ +MP+ + +MA++ LPG SGF+GE + + + +SN V Sbjct: 360 SMSKLGGMAKDMPKVFALFTAGSMASLALPGMSGFVGELTIFLGITTSDIYSSNFKIVVI 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVS----KCEKVQQLKDLSLRE----RCMVYPIAVLT 462 LA+ G++L+ +Y L L R V +G + EK L D RE C++ PI Sbjct: 420 GLAAVGLILTPIYLLNLLRVVFYGENSGGFNIEK--YLGDAKPREVMIATCLLLPI---- 473 Query: 463 VFFGIYPVPIRDTFSV 478 + G+YP T+ V Sbjct: 474 IGIGLYPKVATQTYDV 489 >gi|294496239|ref|YP_003542732.1| F420H2 dehydrogenase subunit M [Methanohalophilus mahii DSM 5219] gi|292667238|gb|ADE37087.1| F420H2 dehydrogenase subunit M [Methanohalophilus mahii DSM 5219] Length = 495 Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 181/485 (37%), Positives = 285/485 (58%), Gaps = 22/485 (4%) Query: 3 LPFLSIVTFLPFLGVFVILFSSY--LGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 LP LS++ +P +LFS++ L R VAL + I I +L+++ FD + Sbjct: 2 LPVLSLIVLIP------LLFSAFAFLTKTREQARVVALMGTLITLILTLYMYFSFDSSSA 55 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q E WI +YHLGVDGIS+ L++L + P IL +W ++ + L Sbjct: 56 AMQFEELASWIPSLGINYHLGVDGISMPLILLNAIVIPLLILFTWDDVRSTPNRFYGLIL 115 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++ VIG F+SLD LFY+F+E +LIP+F ++ +WGG + +A+ KFF+YT S+ ML Sbjct: 116 AMQGAVIGVFVSLDFFLFYVFWELTLIPLFFMVNIWGGPNKRHASIKFFIYTHVASLVML 175 Query: 180 ---FAIVVMCWEKKTSSIIDL-YAMSKFPFS----IQYWMWIAFFCSFAIKIPMFPFHTW 231 F + W++ + + + + MS FP + +++A F +K+P+ PFH+W Sbjct: 176 LGIFGLYFAAWDQTGVANMGIAHLMSHFPMIGSGIARDAIFLALLFGFLVKLPIVPFHSW 235 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS--QYFAPVIFFLSLIAIIYA 289 LP+A+ +APTAGSV I+LK+ GYG R +LP+ P ++ L ++I+Y Sbjct: 236 LPDAYAEAPTAGSVLF--ILLKIAGYGIFRVILPMLPATGTPDMMITILGLLGAVSIVYG 293 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 + +++ Q D+K+++AYSS++HMG+V +G + + GAMFQ SHGL+ S +F VGV Sbjct: 294 AFLALSQKDLKRMVAYSSVSHMGFVALGAAGLVALSISGAMFQQFSHGLIMSIMFMSVGV 353 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 I TR I GGL MP+ AV+MM+ MA++GLPG +GFI EF+V + N T Sbjct: 354 IQASTGTRVINDLGGLATKMPKLAVIMMLAFMASLGLPGLTGFIAEFMVFTFSYVNVPTF 413 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +LA FGVV++A Y LW ++ +FGV K+ ++ DLS + + IA+L ++FG+ P Sbjct: 414 VILALFGVVITAGYHLWAMQRTMFGVYNG-KIGEVFDLSNVQTFSMAVIALLVLYFGLNP 472 Query: 470 VPIRD 474 P+ D Sbjct: 473 SPVLD 477 >gi|303248410|ref|ZP_07334670.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio fructosovorans JJ] gi|302490208|gb|EFL50126.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio fructosovorans JJ] Length = 512 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 184/490 (37%), Positives = 274/490 (55%), Gaps = 15/490 (3%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFS-SYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 +LP+L+++ F P + LF S C RSF AL + I +L V +F GR Sbjct: 13 DLPWLTLLIFWPLAAAVAMPLFRRSREAC--RSF---ALTAALIEGAMALLVILLFAVGR 67 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 SS + E WI Y L DG+S++ V LT F+ C+L+S + Y Sbjct: 68 SSLPVSEDVAWIPQLGIRYTLTCDGLSLVFVALTAFIGVCCMLASRHDDAKRPALYHALI 127 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + V G FL+ D+ LF +F+EA LIP+F +IG++G +R+ A KFFL++ G + M Sbjct: 128 LASLATVQGVFLATDVFLFALFWEAQLIPVFFLIGIFGHGDRMRVAIKFFLFSAVGGLLM 187 Query: 179 LFAIVVM---CWEKKTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 A++ + + T LY +++ P + W++ AF SFAIKIP+ P H WLP Sbjct: 188 FLAVIALGIYAADGPTGPTFALYDLTRLHLPLATARWLFAAFVLSFAIKIPLVPVHMWLP 247 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH +APTAGS+ LAG++LK GGY IRF LPLFP A+ +APV+ L LI + YAS V+ Sbjct: 248 DAHTEAPTAGSLILAGLLLKTGGYALIRFALPLFPEAAVAYAPVLTVLGLIGLFYASWVA 307 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + Q D+K+L+AYSSI HMG I SG + + GA+ M+SHGL S LF G+I +R Sbjct: 308 LAQEDVKRLVAYSSIGHMGLAVAAIVSGSRLALGGAVVMMVSHGLTSGGLFAQAGMIGER 367 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 + +R GGL + PR+ +V +A+ LPG SGF+GE +++ +F+ A Sbjct: 368 MGSRRFAVLGGLWNKAPRFGAAFLVCVLASAALPGLSGFVGEAMIVFGLFRVDVVTGAFA 427 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 G+ + +Y L L R +FG + + DLS RE ++ + + ++ G++P P+ Sbjct: 428 VLGMAATLVYLLRLARDTLFGPPRSDA--PFADLSPRETALMASLILAMLWIGLFPGPVL 485 Query: 474 DTFSVPLSSI 483 S PL I Sbjct: 486 SVISAPLDII 495 >gi|57234290|ref|YP_181657.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Dehalococcoides ethenogenes 195] gi|57224738|gb|AAW39795.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Dehalococcoides ethenogenes 195] Length = 497 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 194/500 (38%), Positives = 298/500 (59%), Gaps = 23/500 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M++P+L+++TFLP G IL + + R+ +L ++ + + SL V++ FD+ S Sbjct: 1 MSIPYLTLITFLPAAGA--ILMALWPRLSGRAIKISSLLLTLVPLVLSLVVFAGFDRSSS 58 Query: 61 SFQMIEYYH---WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 +I++ WI +YHLGVDG+S+ +VLTT L +L SWK + +E+ + Sbjct: 59 MAGVIQFEENLPWISLLNANYHLGVDGLSLPFLVLTTLLGVLAVLISWK-VDLRIKEFFV 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L++ + G F+SLD+LLF+IF+E LIPM+ +I +WG + Y+A K+ LYT FG Sbjct: 118 WLLILQTSITGVFVSLDLLLFFIFWELELIPMYFLISIWGAGRKEYSALKYVLYTLFGGA 177 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 F+L I+++ + + I L + F ++ + FF FAIK+P FPFHTWLP Sbjct: 178 FILAGILILFFATGSLDIASLASTDLNNFLRPAMMVLTFFMFFIGFAIKLPAFPFHTWLP 237 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH APTA SV LAG +LKMGGY +R + +FP + +AP+I +++I +IY + ++ Sbjct: 238 DAHTDAPTAASVILAGTLLKMGGYAMLRLNVAMFPDVCRDWAPLILTIAVINVIYGAAIT 297 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTDIK+LIAYSS++HMG+V +GIF+ + + GA+ QM SHG+++ LF GV+ Sbjct: 298 LKQTDIKRLIAYSSVSHMGFVLLGIFTLGEISMNGAVLQMFSHGIITGLLFAITGVVMHN 357 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-----NT 408 H RDI GGL MPR A++ ++ + M +P TSGFI E V + FQ+S Sbjct: 358 THERDINKLGGLAKQMPRTAIIFILAGLGAMAVPATSGFIAEVSVFLGSFQSSVVPGGQV 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI- 467 +L G+VL+A Y LW ++V G EK Q +KD E +V+ + L V FG+ Sbjct: 418 FTMLCLLGLVLAAAYILWTVQRVFLG-PGLEKFQMVKDADKTE--IVFSLVFLVVMFGVG 474 Query: 468 -YPVPIRD---TFSVPLSSI 483 YP I D T PL+++ Sbjct: 475 LYPQIIVDVIQTGVAPLAAV 494 >gi|108860669|ref|YP_654098.1| NADH dehydrogenase subunit 4 [Trichoplax adhaerens] gi|94962408|gb|ABF48526.1| NADH dehydrogenase subunit 4 [Trichoplax adhaerens] Length = 501 Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 174/445 (39%), Positives = 266/445 (59%), Gaps = 11/445 (2%) Query: 36 VALGISTINFIFSLFVWSVFDK--GRSSFQMIEYYHWIDYFCSYHLG------VDGISIL 87 +AL S I+ I ++ +W D+ G + I++ + +G VDGISI Sbjct: 43 IALFWSFISLISTIILWLSLDQEGGFTPLMDIDWIEGPEKIIPITMGGPLVFAVDGISIY 102 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 ++LT F+ P IL SW S++ + ++I L+LE ++ F LD+ +FYI FE LIP Sbjct: 103 FIILTGFIVPCSILISWHSVKYLTKGFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIP 162 Query: 148 MFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS 206 M++I+G+WG E++ AAY FF YT GS+ ML + + T+ + L + S P Sbjct: 163 MYLILGIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCSHVPSQ 222 Query: 207 IQY-WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 Q W+++ F + A+KIP+FPFH WLP AHV+AP AGSV LAGI+LK+GGYG +R P Sbjct: 223 QQQKWIFLGIFLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWP 282 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 + PL +Q AP + + ++ I+Y S + Q D+K+L+AYSS+AHMG V+I + + G Sbjct: 283 ILPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIG 342 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 + G++F ML+HG+VSS LF V ++YDR HTR I Y GL MP + +M+V ++AN+ Sbjct: 343 LTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVA 402 Query: 386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 +P + FIGE+L I+S F + + V GV+LSA+YS + +V FG S + + Sbjct: 403 VPPSGNFIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFYFANRVTFGASG-SLITSPR 461 Query: 446 DLSLRERCMVYPIAVLTVFFGIYPV 470 D++ RE + + G+YP+ Sbjct: 462 DVNRREFYITASMIFFAFLIGVYPI 486 >gi|87306365|ref|ZP_01088512.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Blastopirellula marina DSM 3645] gi|87290544|gb|EAQ82431.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Blastopirellula marina DSM 3645] Length = 609 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 186/484 (38%), Positives = 275/484 (56%), Gaps = 70/484 (14%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD + Q + WI F Y LG DGIS LVVLT ++ + +SW +I+++ + Sbjct: 55 FDIETAGMQNVVSLPWIPSFNIDYFLGFDGISFPLVVLTALISALAMGASW-TIEKHVKG 113 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y + +L+L + ++G F+SLD LFYIF+E L+PM+ +IGVWGG + YAA KFFLYT F Sbjct: 114 YCVLYLILLTGMMGVFVSLDFFLFYIFWEVMLLPMYFLIGVWGGPRKEYAAIKFFLYTLF 173 Query: 174 GSIFMLFAIVVMCWEKK-----TSSIID-----------------LYAMSKFPFSI---- 207 GS+ ML AI+++ + ++D L A +K+ +I Sbjct: 174 GSVLMLVAILMIYFNSDLRQLSPQQLVDSNVRLAGVEHLGAVDEHLAAATKYHETISAAE 233 Query: 208 ----------------------------QYWMWIAF---FCSFAIKIPMFPFHTWLPNAH 236 + W AF F FAIK+P PFHTWLP+AH Sbjct: 234 TPVHTFNLLALQQLGQHSEVFDKELLFGKSLQWWAFVLLFIGFAIKVPSVPFHTWLPDAH 293 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT S+ LAG++LKMGGYG IR P+ P A A V+ + +I++IY + ++ Q Sbjct: 294 VEAPTPISMILAGVLLKMGGYGIIRICYPICPDAGYDLAWVVCSIGVISMIYGAFAALAQ 353 Query: 297 TDIKKLIAYSSIAHMGYVT--IGIFSGM--------KSGVEGAMFQMLSHGLVSSALFFC 346 TD K+++AYSS++HMGYV +G++S GV+GAMFQM+ HG+ S+ +FF Sbjct: 354 TDFKRMVAYSSVSHMGYVVLGLGVWSATVVGDPVAWNMGVKGAMFQMIGHGISSAGMFFM 413 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 VGVIYDR+H R++ +GGL MP Y + ++ A +GLPG GFIGE V++SV++ S Sbjct: 414 VGVIYDRVHHRNLNEFGGLFGKMPVYTSMAIIVFFAGLGLPGLCGFIGEAFVVLSVWKFS 473 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVS-KCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 +AV +F V+L+A Y LW ++V G K + L ++++RE + P+ VL + F Sbjct: 474 AGLAVAGAFVVILTAGYILWAVQRVYLGAEYKGPHAEALTEINIREMAIAVPLCVLAILF 533 Query: 466 GIYP 469 G+ P Sbjct: 534 GVLP 537 >gi|109156533|ref|YP_654294.1| NADH dehydrogenase subunit 4 [Rhodactis sp. CASIZ 171755] gi|108515261|gb|ABF93374.1| NADH dehydrogenase subunit 4 [Rhodactis sp. CASIZ 171755] Length = 470 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 187/420 (44%), Positives = 265/420 (63%), Gaps = 10/420 (2%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLG-----VDGISILLVVLTTFLTPFCIL 101 +L +W FD FQ+I WI ++ G +DG+S+ +LT L P CIL Sbjct: 48 TLVLWGAFDV-EGQFQIINQIEWIFPPILNFQWGPVILALDGVSLFFFILTALLIPICIL 106 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SER 160 SWKSI+ F+E+++ L LE+++IG FL LD+LLFYI FE LIPMF++IGVWG E+ Sbjct: 107 ISWKSIKYLFKEFLLCLLFLEALLIGVFLVLDLLLFYILFEGILIPMFLLIGVWGSREEK 166 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 + A+Y FF YTF GS+FMLF I + T+ L + + PF Q W+ + F S A Sbjct: 167 VRASYYFFFYTFAGSVFMLFGIFQLYRNTGTTDYQILLNI-QLPFCAQKWILVGVFFSLA 225 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +KIP PFH WLP AHV+AP +GSV LAGI+LK+GGYG +RF + P AS+Y AP+I Sbjct: 226 VKIPQIPFHIWLPQAHVEAPVSGSVILAGILLKLGGYGFLRFSWAILPAASEYLAPLIVM 285 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 L ++AIIY SL++ Q D K+LIAYSS+AHMG V +G+F+ G+ A+F ML+HG VS Sbjct: 286 LGVVAIIYGSLITCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFMMLAHGFVS 345 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 SALF + +Y+R HTR I Y G MP + +MM+ ++ NMG+P + F+GEF ++ Sbjct: 346 SALFIAITYLYERHHTRLIKYYRGATLTMPIFVTIMMILSLTNMGIPLSCNFVGEFFSLL 405 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 + + + + VL + G+V SA YSL+LY ++ FG + +DL+ E V P+ + Sbjct: 406 AAVEYNLGLGVLVTSGMVWSAAYSLYLYNRISFG-GGSNYLLFTRDLNRGELLAVSPLVI 464 >gi|301353309|ref|YP_003795381.1| NAD4 [Phakopsora pachyrhizi] gi|251765322|gb|ACT15475.1| NAD4 [Phakopsora pachyrhizi] Length = 477 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 176/480 (36%), Positives = 284/480 (59%), Gaps = 14/480 (2%) Query: 9 VTFLPFLGVFVILFSSYLGCG--RRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIE 66 + +PF+G + + G RR ++L + + + S+ +W FD + Q++ Sbjct: 7 IVIIPFIGAIHVSLTDEKRVGGIRR----LSLIYTCMTYYISIMIWIEFDGSKVGIQIVS 62 Query: 67 YYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI 126 + D F + GVDG+S+ V+LT P ++S + + N + Y+ L+ +I Sbjct: 63 KFTGWDIF-NIAFGVDGLSVFFVLLTALTIPIAVISGYYIEERNQKLYLSLILIFSGFII 121 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 F+SLD+++FY+ FEA L+P+ +++G++GG RI AAY FLYT FGS+ ML + + + Sbjct: 122 SVFISLDLIIFYVSFEAVLVPLTLLVGIYGGRRRISAAYLLFLYTLFGSLPMLLSFLSIY 181 Query: 187 WEKKTSSIIDLYAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 KT++I+ L MSK +P I W+ F A+K P+ PFH WL AH +A +A SV Sbjct: 182 TITKTTNIVVLSIMSKDYPNMI----WLGIFIGLAVKTPLVPFHLWLKTAHAEANSAVSV 237 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LAG++LK+ Y IR L+ L P ++YF ++ +S+I++IY + + M QTD K+L+AY Sbjct: 238 VLAGLVLKLATYAHIRVLIQLIPDQTEYFQGIVLVISMISVIYTAFICMRQTDFKQLVAY 297 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGG 364 SSI H+G V +GI+S +GVEG + +SHG+VS ALF V GVIYDR H R I Y G Sbjct: 298 SSINHIGIVCLGIYSNTVTGVEGGIMLSISHGVVSPALFILVGGVIYDRYHDRTIRYYRG 357 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P +++ ++FT+ NM P T ++GEF+ + FQ + +LAS +V+SA YS Sbjct: 358 ISTYIPVFSIFFIIFTLGNMATPLTGNWVGEFISLAGAFQTFPVITILASSSIVISACYS 417 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 ++LY ++ FG C + + D++ E ++ P+ +L + G+YP + D V SS+I Sbjct: 418 IYLYNRICFGSWSC-YLNPVIDITRLEFHVLIPLLILMLALGVYPNIVLDYLHVSCSSLI 476 >gi|322379670|ref|ZP_08053988.1| NADH dehydrogenase subunit M [Helicobacter suis HS5] gi|321147906|gb|EFX42488.1| NADH dehydrogenase subunit M [Helicobacter suis HS5] Length = 499 Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 178/434 (41%), Positives = 273/434 (62%), Gaps = 19/434 (4%) Query: 52 WSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN 110 W+VFDK Q E + +YH+GVDGIS+ L++LT F+ +LS + + E+ Sbjct: 51 WAVFDKQTGMMQFEESVELLKLMGINYHVGVDGISLFLILLTAFVI--FLLSLY--VTEH 106 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 ++ +I FL+LE +++G F +L+++ FY+F+EASL+P +IG +G ++IY+A KFFLY Sbjct: 107 AKDMLICFLLLEGILMGVFSALNLIFFYVFWEASLLPALYLIGRFGVKDKIYSALKFFLY 166 Query: 171 TFFGSIFMLFAIVVMC-----------WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF 219 TFF S+ ML I+ W+ ++ + + P + W++ A F Sbjct: 167 TFFASLIMLLGIIYYAYSCLTFLGNPFWDFDLNTFSQVIPAQELPGNAYLWVFGALFLGI 226 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 A+KIP+FPFH+WLP A+ AP AGS L+ ++LKMG Y +RFLLPLFP A Y + Sbjct: 227 AVKIPIFPFHSWLPYAYGNAPVAGSALLSALLLKMGTYAVVRFLLPLFPNAVLYLLLPLS 286 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 LSL +IYA +++ Q ++K+L+AYSS++HMG +G+++ GV GA+F M SHGLV Sbjct: 287 TLSLFMVIYAGILACAQREMKRLVAYSSMSHMGVALLGLYALNTEGVGGAIFTMFSHGLV 346 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 S+ LF +G++YDR + I A+ GL MP YA M+ +AN+G+P TSGF+GEFL + Sbjct: 347 SAGLFMLIGMLYDRSRSTKIVAFKGLAQTMPAYATFFMIILLANVGMPLTSGFVGEFLSL 406 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV-SKCEKVQQLKDLSLRERCMVYPI 458 + F+ S A+LA ++LSA+Y L LY+KV +G+ ++C VQ KD+ RE+ ++ + Sbjct: 407 LGFFKISPLFALLAGTTIILSAIYMLVLYKKVFYGLPNRC--VQAFKDICWREKSIMACL 464 Query: 459 AVLTVFFGIYPVPI 472 +F GIYP P+ Sbjct: 465 VAAILFLGIYPKPL 478 >gi|326799617|ref|YP_004317436.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingobacterium sp. 21] gi|326550381|gb|ADZ78766.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingobacterium sp. 21] Length = 534 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 188/531 (35%), Positives = 299/531 (56%), Gaps = 52/531 (9%) Query: 3 LPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD----- 56 + LS++ FLP +FV+L + + + +A+ IS I + + ++++ FD Sbjct: 1 MSLLSVLIFLPLCAALFVLLIPT---AYKTIYKYIAVSISVIQLLLAAYMYASFDGKLPG 57 Query: 57 -KGRSSFQMIEYYHWI--------DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 S+Q +E WI Y +GVDG S+L + LT + +++SWK I Sbjct: 58 VSALESYQFVEKLPWIRLELGSLGSLEVDYFVGVDGFSVLFLFLTALVMLIAVIASWK-I 116 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKF 167 + + + L+L + V+G F++LD LFY+F+E L+P++ +IG+WGG R YAA KF Sbjct: 117 DKQLKGFFSLLLLLNTAVMGVFVALDFFLFYVFYEVMLLPLYFLIGIWGGVRREYAAIKF 176 Query: 168 FLYTFFGSIFMLFAIVVMCWE-------KKTSSIIDLYAMSK---------------FPF 205 FLYT FGS+FML +V + + T +++ + F Sbjct: 177 FLYTLFGSVFMLLVMVGLYFSVTDPVTGNHTFNLLHMMDDKNYVDGALFSWIGNYQLFGI 236 Query: 206 SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 S + +I F +FAIK+P+ P HTWLP+AHV+APT S+ LAGI+LK+GGYG IR Sbjct: 237 SARLLGFIILFIAFAIKVPIVPLHTWLPDAHVEAPTPISIILAGILLKVGGYGIIRICYS 296 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 +FP + + I + +++IIY +L ++ Q D+K+L+AYSS++HMG+V +G+ S G Sbjct: 297 IFPDIAFNGSWWIGLIGVVSIIYGALNALAQQDLKRLVAYSSVSHMGFVLLGLASLTPEG 356 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 + GAMFQM+SHG +S+ LFF VGV+YDR+H R I+ + GL MP+Y + + A++G Sbjct: 357 ISGAMFQMISHGFLSAMLFFLVGVLYDRVHDRMIYNFRGLASIMPKYTAFVAIAFFASLG 416 Query: 386 LPGTSGFIGEFLVIMSVFQNSNT-------VAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 LPG S FI E I+ F + +A+ + G++LSA Y LW +++ FG ++ Sbjct: 417 LPGFSAFIAEAFTIIGAFNAESVNGLLPRWMAIGGAVGILLSAAYFLWTLQRMFFGHTRL 476 Query: 439 EKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + Q L D+ RE + P+ +L + FGI P + D + + S+IE Sbjct: 477 KGGSQWEAALTDVGRRETWALVPMVLLALLFGIMPSLVFDKINASVLSLIE 527 >gi|330503260|ref|YP_004380129.1| NADH dehydrogenase subunit M [Pseudomonas mendocina NK-01] gi|328917546|gb|AEB58377.1| NADH dehydrogenase subunit M [Pseudomonas mendocina NK-01] Length = 509 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 172/421 (40%), Positives = 260/421 (61%), Gaps = 14/421 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 + HL +DG+S+L+VVLT L +L SW IQ + + + + V+G FL++D+ Sbjct: 79 TIHLAMDGLSVLMVVLTGLLGVLSVLCSWNEIQHRVGFFHLNLMWILGGVVGVFLAVDLF 138 Query: 136 LFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 LF+ F+E L+PM+ +I +WG G RI AA KFF++T + ML +I+ + + Sbjct: 139 LFFFFWEMMLVPMYFLIALWGHSGSDGRTRITAATKFFIFTQASGLIMLVSILALVFVHF 198 Query: 191 TSSII------DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + + DL P +Y + + FF +FA+K P+ P H+WLP+AH QAPTAGS Sbjct: 199 NQTGVLSFNYADLLKTQLAP-GTEYLLMLGFFVAFAVKFPVVPVHSWLPDAHAQAPTAGS 257 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 V LAGI+LK YG +RF LPLFP AS FAP+ +L + AI+Y +L+S QTDIK+L+A Sbjct: 258 VDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAQWLGVFAIVYGALLSFAQTDIKRLVA 317 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG+V I I+SG + ++GA+ QM++HGL ++ALF G +Y+R+HTRD+ GG Sbjct: 318 YSSVSHMGFVLIAIYSGSQIALQGAVVQMVAHGLSAAALFILCGQLYERVHTRDLRQMGG 377 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + MP + + F A +GLPGT F+GEFL+++ F + V VLA+ G+VL ++Y+ Sbjct: 378 IWARMPWLPAISLFFAAAALGLPGTGNFVGEFLILIGSFPAAPWVVVLAACGLVLGSVYA 437 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 L + + FG K + L L RE MV + VL + G+YP P+ DT + + + Sbjct: 438 LAMIHRAYFGPVKQDA--PLPGLKARELAMVLGLGVLLILLGVYPQPVLDTSAASMHGVQ 495 Query: 485 E 485 + Sbjct: 496 Q 496 >gi|270308203|ref|YP_003330261.1| NADH:quinone oxidoreductase subunit 4 (chain M) [Dehalococcoides sp. VS] gi|270154095|gb|ACZ61933.1| NADH:quinone oxidoreductase subunit 4 (chain M) [Dehalococcoides sp. VS] Length = 497 Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 193/500 (38%), Positives = 298/500 (59%), Gaps = 23/500 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M++P+L+++TFLP G IL + + R+ +L ++ + + SL V++ FD+ S Sbjct: 1 MSIPYLTLITFLPAAGA--ILMALWPRLSGRAIKISSLLLTLVPLVLSLVVFAGFDRSSS 58 Query: 61 SFQMIEYYH---WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 +I++ WI +YHLGVDG+S+ +VLTT L +L SWK + +E+ + Sbjct: 59 MAGVIQFEENLPWISLLNANYHLGVDGLSLPFLVLTTLLGVLAVLISWK-VDLRVKEFFV 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L++ + G F+SLD+LLF+IF+E LIPM+ +I +WG + Y+A K+ LYT FG Sbjct: 118 WLLILQTSITGVFVSLDLLLFFIFWELELIPMYFLISIWGAGRKEYSALKYVLYTLFGGA 177 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 F+L I+++ + + I L + F ++ + FF FAIK+P FPFHTWLP Sbjct: 178 FILAGILILFFATGSLDIASLASTDLNNFLRPAMMVLTFFMFFIGFAIKLPAFPFHTWLP 237 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH APTA SV LAG +LKMGGY +R + +FP + +AP+I +++I +IY + ++ Sbjct: 238 DAHTDAPTAASVILAGTLLKMGGYAMLRLNVAMFPDVCRDWAPLILTIAVINVIYGAAIT 297 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTDIK+LIAYSS++HMG+V +GIF+ + + GA+ QM SHG+++ LF GV+ Sbjct: 298 LKQTDIKRLIAYSSVSHMGFVLLGIFTLGEISMNGAVLQMFSHGIITGLLFAITGVVMHN 357 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-----NT 408 H RDI GGL MPR A++ ++ + M +P TSGFI E V + FQ+S Sbjct: 358 THERDINKLGGLAKQMPRTAIIFILAGLGAMAVPATSGFIAEVSVFLGSFQSSVVPGGQV 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI- 467 +L G+VL+A Y LW ++V G EK Q +KD E +V+ + L V FG+ Sbjct: 418 FTMLCLLGLVLAAAYILWTVQRVFLG-PGLEKFQMVKDADKTE--IVFSLVFLVVMFGVG 474 Query: 468 -YP---VPIRDTFSVPLSSI 483 YP V + T PL+++ Sbjct: 475 LYPQIVVDVIQTGVAPLAAL 494 >gi|256396780|ref|YP_003118344.1| proton-translocating NADH-quinone oxidoreductase, chain M [Catenulispora acidiphila DSM 44928] gi|256363006|gb|ACU76503.1| proton-translocating NADH-quinone oxidoreductase, chain M [Catenulispora acidiphila DSM 44928] Length = 526 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 172/468 (36%), Positives = 281/468 (60%), Gaps = 20/468 (4%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLT 96 LG S + + + F KG FQ E + WI F +Y LGVDGI+++L+++T L Sbjct: 37 LGFSVATLGIGIAMATQFKKGGDRFQFTESHQWIKAFNINYGLGVDGIALVLILMTLVLM 96 Query: 97 PFCILSSWKSIQE-------NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 P +L+ W E + R Y +L+LE+M+IG F + D+ LFY+FFEA LIPM+ Sbjct: 97 PVVMLAGWHDADEAQADGRRSVRAYFSLYLLLETMMIGVFAATDLFLFYVFFEAMLIPMY 156 Query: 150 VIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPFS 206 +IG +GG +R YAA KF LY+ FG +FML A++ V + + D ++ Sbjct: 157 FLIGGFGGPQRSYAAVKFLLYSLFGGLFMLAALIGLYVASGKHLGTGTFDFQTLATAVAH 216 Query: 207 IQYW--------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 Q +++ FF +FA+K P+FPFHTWLP+A +A +V L G++ K+G +G Sbjct: 217 DQLGISPGLGKALFLGFFVAFAVKAPLFPFHTWLPDAAAEATPGSAVLLVGVLDKVGTFG 276 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +R+ L LFP AS++F P++ ++++ +Y +L+++ QTDIK+LIAY+SI+H G +T+G+ Sbjct: 277 MLRYCLELFPGASKFFTPLVIGMAIVGTMYGALLAIGQTDIKRLIAYTSISHFGLITLGV 336 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 F+ +G GA M++HGL + ALF G + R ++ I YGG+ P+ A V ++ Sbjct: 337 FAMTSAGQSGASLYMVNHGLSTGALFIVAGFLISRRGSQLIDDYGGVNKVAPKLAGVFLI 396 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 ++++ LPG S F+ EFLV++ F+ VA++A+ ++L+ALY LWLY++ + G K Sbjct: 397 AGLSSLALPGLSSFVSEFLVLVGTFERYKAVAIVATAAIILAALYVLWLYQRTMTGPLKA 456 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 ++ +KDL RE V P+ L + G YP P+ D + +++ +++ Sbjct: 457 -GLEGMKDLRAREVIAVAPLIALIIGLGFYPKPVLDVVNPSVNTTLQH 503 >gi|237732308|ref|ZP_04562789.1| NADH dehydrogenase subunit M [Citrobacter sp. 30_2] gi|283832293|ref|ZP_06352034.1| NADH dehydrogenase I, M subunit [Citrobacter youngae ATCC 29220] gi|226907847|gb|EEH93765.1| NADH dehydrogenase subunit M [Citrobacter sp. 30_2] gi|291071938|gb|EFE10047.1| NADH dehydrogenase I, M subunit [Citrobacter youngae ATCC 29220] Length = 509 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 189/509 (37%), Positives = 292/509 (57%), Gaps = 35/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMGLTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWNEI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + ++ + + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYKATGVWTFNYEELLNTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HG Sbjct: 290 AMWLGVIGIFYGAWMAFNQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHG 349 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L ++ LF G +Y+RLHTRD+ GGL M + M F + +G+PGT F+GEF+ Sbjct: 350 LSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVCTLGMPGTGNFVGEFM 409 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVY 456 ++ +Q + V+++FG+V +++YSL + + FG +K + +L +SLRE ++ Sbjct: 410 ILFGSYQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASVELPGMSLRELFIIL 469 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + VL V G YP PI DT +S+I + Sbjct: 470 LLVVLLVLLGFYPQPILDTSHSAMSNIQQ 498 >gi|269958711|ref|YP_003328498.1| NADH dehydrogenase subunit M [Anaplasma centrale str. Israel] gi|269848540|gb|ACZ49184.1| NADH dehydrogenase subunit M [Anaplasma centrale str. Israel] Length = 488 Score = 312 bits (799), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 177/423 (41%), Positives = 263/423 (62%), Gaps = 15/423 (3%) Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL----TPFCILSSWKSIQENFRE 113 G + Q + W++ D +SILL VL+TFL + FC+ S+ + Sbjct: 50 GDTVTQEVASLRWVER----AFSADALSILLTVLSTFLFLICSLFCVFSTRGAPVAP--S 103 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 + L+LES VI F + D+L F+IFFEASL+PMF IIG WG +++ AA+KF +YT Sbjct: 104 FFSLLLLLESCVIAVFCTCDILTFFIFFEASLVPMFFIIGFWGHGDKVGAAFKFLIYTAT 163 Query: 174 GSIFMLFAIVVM--CWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 S+ L A+ M + S D+ A + F Q + WI F +FA+K+PM P H Sbjct: 164 ASVGFLAAVACMDAVANATSGSFSDVAAGLAANTHFRWQIYFWILCFIAFAVKLPMVPCH 223 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP AHVQAPT GSV LAG+++K+GGYG RF + + P S +FA + LS ++IY+ Sbjct: 224 TWLPTAHVQAPTVGSVLLAGLLIKLGGYGIFRFCIQMLPAISVHFAKFVVCLSAASLIYS 283 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 SLV+ Q ++K LIAYSSIAHM +V G+FS +SG+ GA++QMLSHGL+S+ALF CVG+ Sbjct: 284 SLVAFAQRNMKMLIAYSSIAHMSFVAAGMFSLNESGILGAVYQMLSHGLISAALFLCVGM 343 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 IY R T ++ GL MPR + +++ F+MA+ G+PGTSGF+GEFL ++ +F++ + Sbjct: 344 IYSRTGTMEMSECTGLASKMPRLSAMIVFFSMASAGVPGTSGFMGEFLSMLGIFKSFGPM 403 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G+VLSA Y L L ++VV+G + + D++ E ++ +A+L + G++P Sbjct: 404 VACFAVGIVLSAAYMLRLCKEVVWGSAPADS-GTFDDINAGEFAILAILAILVLVLGVFP 462 Query: 470 VPI 472 P+ Sbjct: 463 APL 465 >gi|71892255|ref|YP_277989.1| NADH dehydrogenase I chain M, membrane subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796361|gb|AAZ41112.1| NADH dehydrogenase I chain M, membrane subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 513 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 184/479 (38%), Positives = 274/479 (57%), Gaps = 42/479 (8%) Query: 23 SSYLGCGRRSFFGVALGISTINFIFSLFVWS--------------VFDKGRSSFQMIEYY 68 S +GC + +AL +I FI + F+W VF K +Q+ Y Sbjct: 20 SERIGCWVPRW--IALSGMSITFITTFFLWQYECHDLLNSHPTEHVFPK----WQLEYIY 73 Query: 69 HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 WI F S HL +DG S+L+V LT FL +L SW IQ + + L + VIG Sbjct: 74 PWIPRFGISVHLALDGFSLLMVTLTGFLGCMAVLCSWCEIQRYHGLFYLNLLWILGGVIG 133 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE-----RIYAAYKFFLYTFFGSIFMLFAI 182 FLS+DM LF+ F+E LIPM+ +I +WG E RI A KFF+YT F +FML +I Sbjct: 134 VFLSIDMFLFFFFWEIMLIPMYFLISLWGHKEVNRSGRINTAIKFFVYTQFSGLFMLISI 193 Query: 183 VVMC---------WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 + + W ++++ P + +Y + + FF +FA+K+P+ PFH WLP Sbjct: 194 IALVSIHHDMHGVWSFNYQDLLNML----LPVNAEYLIMLGFFFAFAVKMPIVPFHVWLP 249 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 + H APT+GSV LAGI+LK YG RF+LPLFP AS+ FAP+ L L+ I Y + ++ Sbjct: 250 DVHSHAPTSGSVDLAGILLKTSAYGFFRFVLPLFPCASKSFAPIAMCLGLVNIFYGACMA 309 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 QTD+K+LIAY+SI+HMG+V I I+SG +GA+ QM+SH L S +F G +Y+R Sbjct: 310 FAQTDVKRLIAYTSISHMGFVLIAIYSGTHLSYQGAVVQMISHSLSVSGMFIICGQLYER 369 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 +HTRD+ GGL M + F A +GLPGT FIGE ++ FQ++ + ++A Sbjct: 370 IHTRDMRLMGGLWSRMHLIPAFSLCFAAATLGLPGTGNFIGEVTILFGNFQSAPIITIIA 429 Query: 414 SFGVVLSALYSLWLYRKVVFG---VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 FG++LS++YSL L +++ +G V + K L++++LRE+ ++ + + G +P Sbjct: 430 CFGIILSSIYSLILMQRIYYGPILVPRVNKSGLLRNMTLREKNIIIILLLCIFLIGFFP 488 >gi|317051059|ref|YP_004112175.1| proton-translocating NADH-quinone oxidoreductase subunit M [Desulfurispirillum indicum S5] gi|316946143|gb|ADU65619.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfurispirillum indicum S5] Length = 502 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 179/490 (36%), Positives = 287/490 (58%), Gaps = 22/490 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD-KGRSSFQM 64 LSI+ FLP L FV+L + R+ LG+ I L + + + Q Sbjct: 6 LSIMIFLPILAGFVLLAAPMAVTAART-----LGMVVILVQLLLGLMLFGNFAATGNMQF 60 Query: 65 IEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 E Y WI +Y Y LG+DGIS++LV++ T L P L W+ + F + L+++ Sbjct: 61 TEKYSWIAEYGVYYSLGLDGISLMLVMIITVLFPMLFLLQWEGKTKGFWGNL---LLVQG 117 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 +IGA + D++LFY+F+E LIP+F ++G++GG +RI A K +YT GS+ M AI+ Sbjct: 118 ALIGAVSAADLILFYVFWELMLIPIFFMMGLYGGKDRIAATIKITIYTMAGSLLMFVAIL 177 Query: 184 VMCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + + ++ DL ++ S +W++ AF +FAIKIP+FP HTWLP+A+ Sbjct: 178 ALAFSYYSQFGQWSFALADLTQVT-LSGSAAFWIFAAFMLAFAIKIPLFPLHTWLPDAYT 236 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APTA + L+ IM K+G Y IRF+LP++P +A V+ L LI +IY + ++ Q Sbjct: 237 EAPTAATFVLSAIMAKIGVYAVIRFVLPVYPQEYIMYAGVLLVLGLIGMIYCGIAAIQQK 296 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D K+++AYSS +H+G + +GIF+ + G+++Q+++H + + LF VG++ RL TR Sbjct: 297 DAKRMLAYSSASHLGLIAVGIFAMNTQAMVGSVYQIVAHAMATGMLFLLVGLLEQRLGTR 356 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +I + GG+ P YA + +A+ GLPGT+GFIGEFL+I+ F+ + + V+A+ V Sbjct: 357 EIDSLGGIAKVAPVYATFFAIAMLASCGLPGTNGFIGEFLIILGTFKYNTWLGVVAATTV 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 ++ Y LW+Y++V+F + + KDL+ RE + PI VL +F GIYP P D Sbjct: 417 IVGVTYILWMYQRVIFQKTNT-LTEGFKDLNTREILGLAPIVVLIIFMGIYPKPFIDK-- 473 Query: 478 VPLSSIIENY 487 + +ENY Sbjct: 474 --IEPTVENY 481 >gi|326799012|ref|YP_004316831.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingobacterium sp. 21] gi|326549776|gb|ADZ78161.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingobacterium sp. 21] Length = 484 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 171/433 (39%), Positives = 271/433 (62%), Gaps = 12/433 (2%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 SS Q + WI +H+G+DGIS+ LV+LT L P ILS++K Q+ Y + Sbjct: 53 SSMQFEQNIPWIPALGIHFHVGIDGISMPLVLLTNGLIPLIILSTFKQQQQRGAFYALV- 111 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L +++ ++ F +LD LFY+ +E +LIP++ I G+WGG R KFF+YTF GS+ M Sbjct: 112 LFMQTGLLLVFTALDAFLFYVGWEIALIPIYFICGLWGGENRARVTLKFFIYTFAGSLLM 171 Query: 179 LFAIVVMCWEKKTSSIIDLYAMS-----KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 L AI+ + + T++ Y +S K Q +++ AFF +FAIK+P+FPFHTW P Sbjct: 172 LIAIIYLYTQVPTAN----YELSSFYELKLDEKTQRYIFWAFFIAFAIKMPLFPFHTWQP 227 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 + +V+APTAG++ L+GIMLKMG YG IR+LLP+ PL + ++ L++I I+YAS+++ Sbjct: 228 DTYVEAPTAGTMLLSGIMLKMGVYGLIRWLLPIAPLGFSQYGTLVLSLAVIGIVYASIIA 287 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 Q D+K+LIAYSSIAH+G + G+F ++GAM QM++HG+ LFF + +I + Sbjct: 288 FKQRDVKRLIAYSSIAHVGLIAAGVFVWNVQSLQGAMIQMINHGISVVGLFFVIEIIARQ 347 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 L TR+I GGL N P A+V +V + +GLP T+GFIGEFL+++ ++Q A+ A Sbjct: 348 LKTREIQDMGGLAKNAPTLALVFLVIVLGAIGLPLTNGFIGEFLLLIGLYQAGLWWAIFA 407 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 ++L A+Y L +Y+ V+ G + E++ KD++ + ++ + VL + G+YP P+ Sbjct: 408 GLTIILGAVYMLRMYQGVMLGETN-ERMTHFKDINGTDLLLLGVLVVLIIAIGLYPRPLL 466 Query: 474 DTFSVPLSSIIEN 486 ++++IE Sbjct: 467 HLSEAAVTNLIEQ 479 >gi|284929465|ref|YP_003421987.1| NADH dehydrogenase subunit M [cyanobacterium UCYN-A] gi|284809909|gb|ADB95606.1| NADH dehydrogenase subunit M [cyanobacterium UCYN-A] Length = 530 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 180/494 (36%), Positives = 298/494 (60%), Gaps = 27/494 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 N+P+L+ + +P + F I F G RS+ +LG+S +NF ++ S +D Sbjct: 5 NIPWLTALILVPLIAAFAIPFIPDKEGKTLRSY---SLGVSLLNFGLTILAISRDYDFSS 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S+ Q+ E Y+WI + LG+DG+S+ L+VL+ +T +L+SW ++++ + + Sbjct: 62 SNLQLSESYNWIPTMGLGWSLGIDGLSMPLIVLSGLITTVALLASW-NVKKKPQLFYFLM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LVL S IG F + D+LLF+ +E L+P++++I +WGG +R+YAA KF LYT SI + Sbjct: 121 LVLYSAQIGVFAAQDVLLFFFMWELELVPVYLLISIWGGEKRLYAATKFILYTALASIGI 180 Query: 179 LFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L + +++ + + T ++ +L ++ + P S+Q ++I F ++A+K+P+FP HTWLP+AH Sbjct: 181 LVSALLLAFYGDNITFNMAEL-SLKEIPTSLQVLIYIGFLIAYAVKLPIFPLHTWLPDAH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 QA T S+ LAG++LKMGGYG IRF + + P A FAP++ L ++ ++Y + + Q Sbjct: 240 SQASTPVSMILAGVLLKMGGYGLIRFNMEMLPNAHIIFAPLLLILGVVNVVYGAFAAFGQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 T++K+ +A SS++HMG+V IGI S + G+ GA+FQM+SHGL++++LFF G Y+R HT Sbjct: 300 TNLKRRLACSSLSHMGFVLIGISSFTEVGINGAVFQMVSHGLIAASLFFLCGTTYERTHT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVA 410 + GGL MP+ + MA++ LPG SGF+ E + + V ++ +A Sbjct: 360 LMMDEMGGLALKMPKTFALFTTSAMASLALPGMSGFVAELTIFLGVAESDAYTASFKAIA 419 Query: 411 V-LASFGVVLSALYSLWLYRKVVFGVS--KCEKVQQLKDLSLRE----RCMVYPIAVLTV 463 + L + G+VL+ +Y L + R V +G S K E Q D RE C++ PI ++ Sbjct: 420 IFLTAVGLVLTPIYLLSMLRVVFYGQSNEKLELSQFNLDAKPREIFISACLIAPIIIM-- 477 Query: 464 FFGIYPVPIRDTFS 477 G+YP +TF Sbjct: 478 --GLYPKIATETFD 489 >gi|163751857|ref|ZP_02159072.1| NADH dehydrogenase I, M subunit [Shewanella benthica KT99] gi|161328273|gb|EDP99435.1| NADH dehydrogenase I, M subunit [Shewanella benthica KT99] Length = 532 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 176/475 (37%), Positives = 279/475 (58%), Gaps = 43/475 (9%) Query: 58 GRSSFQMIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 RSS + + H WID F + H +DG+S++L++LT + + S+W I ++ + Sbjct: 53 ARSSQWLFDESHVWIDRFNITAHFSMDGLSLVLILLTLLMGLVALSSAWSDIDKHQGFFY 112 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 FL + +IG FL++D+LLF++F+E L+PM+ +I +WG R YAA KFFL+T G Sbjct: 113 FNFLWTLAGIIGVFLAMDLLLFFVFWEVMLVPMYFLIAIWGHENRRYAALKFFLFTQTGG 172 Query: 176 IFMLF---AIVVMCWEKKTSSIIDLYAMSKFPF--SIQYWMWIAFFCSFAIKIPMFPFHT 230 + ML A+VV +++ D + P + W+ + F +F +K+P FPFH Sbjct: 173 LLMLMSIIALVVFHYQQTGLLSFDYQVLILTPIVSPMAIWICLGFIIAFLVKLPAFPFHP 232 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH QAPT S+ LA I+LK GGYG IRF+LPLFP A Q+++P++ L++++IIY + Sbjct: 233 WLPDAHTQAPTPASIILAAILLKTGGYGIIRFVLPLFPDAVQFWSPLMMSLAVLSIIYGA 292 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 L++ Q D+K+++AYSS++HMG+V +G FS ++GA+ QML+HGL S+ALF VG+I Sbjct: 293 LMAFSQHDLKRIVAYSSVSHMGFVLLGCFSLNMIALQGAVMQMLAHGLSSAALFMLVGLI 352 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 R H+RD+ + GL +P+ + + + F +A++G+PG FIGEFLV++ + + A Sbjct: 353 QQRFHSRDLHQFSGLWRYLPQLSAMGLFFAIASLGMPGLGNFIGEFLVLVGALEQHASFA 412 Query: 411 VLASFGVVLSALYSLWLYRKVVFG---------------------------VSKCEKVQQ 443 VLAS G++L A+YSL + +K FG + E + Sbjct: 413 VLASLGLILGAVYSLRMIQKSFFGPFRTQGSDLENPASTADTRIPLTSTSEQASAEVTEH 472 Query: 444 LK---------DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTL 489 K DLSL+E+ + IA + GI+P P+ D PL+ ++ Y + Sbjct: 473 TKPPVLPSPYPDLSLKEKLTLMSIAAGLILLGIHPQPLLDMLEQPLAQVLALYAI 527 >gi|120402871|ref|YP_952700.1| NADH dehydrogenase subunit M [Mycobacterium vanbaalenii PYR-1] gi|119955689|gb|ABM12694.1| NADH dehydrogenase subunit M [Mycobacterium vanbaalenii PYR-1] Length = 526 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 185/498 (37%), Positives = 286/498 (57%), Gaps = 26/498 (5%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P L+ + +P +G V++ G + VAL +S I + + FD FQ Sbjct: 6 PVLTALWAVPMVGAVVVMLLPAAARGLAKW--VALSVSLIVLGVAAVIAVGFDPAGDQFQ 63 Query: 64 MIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAF 118 +E Y WI F + Y LGVDGI++ LVVLT L P I++ W ++ R I F Sbjct: 64 FVENYRWIPSFGTGYILGVDGIALALVVLTAVLLPLLIMAGWNDARDELSWGGRSVHIYF 123 Query: 119 ---LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L +E MV+ + +SLD+LLFY+FFEA LIPM+ +IG +GG++R AA KF LY FG Sbjct: 124 ALILAVEGMVLISLVSLDILLFYVFFEAMLIPMYFLIGGFGGADRSRAAVKFLLYNLFGG 183 Query: 176 IFMLFAIVVMCWEKKTSSIID---------LYAMSKFPFSIQ----YWMWIAFFCSFAIK 222 + ML ++V + S D + A++ F + + ++ F +FA+K Sbjct: 184 LIMLASVVGLYVATAGSDAFDAGTFDFRAIVAAVAGGEFVVNPVVMHLLFGGFMFAFAVK 243 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 P++PFH WLP+A V+A A +V + IM K+G +G IR+ LPLFP ++ YF+ +I L+ Sbjct: 244 APLWPFHRWLPDAAVEATPASAVLMMAIMDKVGTFGMIRYCLPLFPDSASYFSGLIITLA 303 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 +I I+Y ++V++ QTD+ +LIAY+SI+H G++ +GIF G G+ M++HG+ ++A Sbjct: 304 VIGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILGIFVMTTQGQSGSTLYMVNHGISTAA 363 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF G + R +R I AYGG+ P A +V +A + LPG + FI EFLV++ Sbjct: 364 LFLIAGFLVSRRGSRLINAYGGVQKLAPVLAGTFLVAGLATLSLPGLAPFISEFLVLIGT 423 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFG---VSKCEKVQQLKDLSLRERCMVYPIA 459 F AVLA+ +VLSA+Y LW+Y++++ G +S E +++DL RE +V P+ Sbjct: 424 FTRYPVFAVLAASALVLSAIYVLWMYQRMMTGPAPLSLVEGEHKIRDLVPREIAVVAPLI 483 Query: 460 VLTVFFGIYPVPIRDTFS 477 L + G+YP P D + Sbjct: 484 ALLLVLGVYPKPALDVIN 501 >gi|290475906|ref|YP_003468801.1| NADH dehydrogenase I subunit M, membrane subunit [Xenorhabdus bovienii SS-2004] gi|289175234|emb|CBJ82037.1| NADH dehydrogenase I chain M, membrane subunit [Xenorhabdus bovienii SS-2004] Length = 506 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 171/430 (39%), Positives = 265/430 (61%), Gaps = 13/430 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S HL +DG+S+L+VVLT L IL SW Q + + L + V+G Sbjct: 71 WIPRFGISIHLALDGLSLLMVVLTALLGLMAILCSWNENQPYQGFFHLNLLWILGGVMGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++D+ LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML +I+ Sbjct: 131 FLAIDLFLFFFFWEMMLVPMYFLIALWGHRGSGGKTRITAATKFFIYTQASGLVMLISIL 190 Query: 184 VMCWEKKTSSIIDLYAMSKF---PFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ ++ K P S +QY + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 ALAFVYHDATGEWSFSYEKLLNTPMSDTVQYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPLFPQASAEFAPIAMWLGVIGIFYGAWMAFSQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ LF G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFIVCGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ F + ++ FG+V Sbjct: 371 MRNMGGLWGKIQLLPAISLFFAVATLGMPGTGNFVGEFMILFGSFSKFTLITTVSVFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++Y+L+L +K +G +K L+ + +RE ++ + VL V G+YP P+ DT + Sbjct: 431 FASVYALYLMQKAYYGTPTTDK--PLQRMDVREISILLLLVVLLVIVGVYPQPVLDTSAA 488 Query: 479 PLSSIIENYT 488 +S+I Y+ Sbjct: 489 AMSNIQNWYS 498 >gi|256380653|ref|YP_003104313.1| proton-translocating NADH-quinone oxidoreductase, chain M [Actinosynnema mirum DSM 43827] gi|255924956|gb|ACU40467.1| proton-translocating NADH-quinone oxidoreductase, chain M [Actinosynnema mirum DSM 43827] Length = 520 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 166/488 (34%), Positives = 272/488 (55%), Gaps = 32/488 (6%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTTF 94 AL S + + W+ ++ G Q+ WI F HL GVDGI+++++ L F Sbjct: 33 ALAFSLGELVLAGLAWAAYEPGGDRLQLTSSVEWIPNF-GVHLSFGVDGIALVMIALIAF 91 Query: 95 LTPFCILSSWKSIQENFRE---YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 L P I SW R + LV+E+ ++G F + D+ LFY+FFE L+PM+ + Sbjct: 92 LVPVVIGGSWADKLPEGRTAGGFFALLLVMEAGMVGVFAATDVFLFYVFFEGVLVPMYFL 151 Query: 152 IGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIID----LYAMSKFP 204 IG +GG+ R YAA KFFLY+ G + ML +++ V + D + A + P Sbjct: 152 IGRFGGANRQYAAMKFFLYSLLGGLVMLASVIGLYVTSAQTLGKGTFDWATLVTATREAP 211 Query: 205 FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 S Q W+++ FF +FAIK P+ P HTWLP+A +AP V L G++ K+G +G +R+ L Sbjct: 212 LSTQIWLFLGFFVAFAIKAPLVPLHTWLPDAGAEAPVGAGVLLVGVLDKIGTFGFLRYCL 271 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 PLFP AS+ AP++ L+++ I+Y SL+++ Q+D+K+ +AY+SIAH G++ +GIF+ Sbjct: 272 PLFPAASKELAPLVLVLAVVGIVYGSLLAVGQSDMKRFVAYTSIAHFGFIALGIFAFSSQ 331 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 G++ M++HG+ + +F VG++ R +R I YGG+ P A + + ++++ Sbjct: 332 AGAGSVLYMVNHGISTGMVFLVVGMVMARGGSRLIEDYGGMAKLTPVLAGLFFIAGLSSL 391 Query: 385 GLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF----------- 433 LPGTS F+ EFLV++ F N V+A+ G+VL+ALY LWLY+++ Sbjct: 392 ALPGTSSFVSEFLVLIGSFPNEPVYTVIAALGMVLAALYILWLYQRIFQGPVRGTALIGA 451 Query: 434 ----GVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTL 489 G + + + DL+ RE ++ P+ L + G YP P+ D + + + + Sbjct: 452 TGGPGATTDPERASVPDLNKREIAVLAPMVALILVLGFYPKPVLDVITPSVGATLS---- 507 Query: 490 KTGYSDSV 497 + G +D V Sbjct: 508 EVGVADPV 515 >gi|312885984|ref|ZP_07745612.1| NADH dehydrogenase subunit M [Mucilaginibacter paludis DSM 18603] gi|311301521|gb|EFQ78562.1| NADH dehydrogenase subunit M [Mucilaginibacter paludis DSM 18603] Length = 530 Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 175/430 (40%), Positives = 266/430 (61%), Gaps = 38/430 (8%) Query: 59 RSSFQMIEYYHWI--------DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN 110 + +Q +E HWI Y +GVDGISI+L+++++ + LSSW+ I +N Sbjct: 63 EAQYQFVEKLHWIGLNLGGMGKMQIDYFVGVDGISIVLLLMSSIVMVIAALSSWE-INKN 121 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + Y FL+L+ + G F SLD LFYIF+E L+P++ +IG+WGG++R YAA KFFLY Sbjct: 122 HKGYFALFLLLDVAITGVFCSLDFFLFYIFYELMLLPLYFLIGIWGGAKREYAAIKFFLY 181 Query: 171 TFFGSIFMLFAIVVMCWEKK-------TSSIIDLYAMSKFPF-----SIQYWM------- 211 T FGS+FML +V + + K T ++I + + + +I + M Sbjct: 182 TLFGSVFMLLVMVGLYFSVKDPATGNHTFNMIQMMNTANYDAGSVFSTISHRMLFGLPAR 241 Query: 212 ---WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 +I F +FAIK+P+ P HTWLP AHV+APT S+ LAG++LK+GGYG IR L +FP Sbjct: 242 TVGFIVLFIAFAIKVPVVPLHTWLPAAHVEAPTPVSIILAGVLLKVGGYGIIRICLGIFP 301 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 + A + L +I+I+Y +L ++ Q D+K+LIA+SSI+HMG+V +GI S GV G Sbjct: 302 EVAASGAFWLGLLGVISILYGALNALAQRDLKRLIAFSSISHMGFVLLGIASQTAEGVSG 361 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 A+ QM+SHG +SS LFF VGVIY+R+H RD++++ GL +P+Y V +M+ A++GLPG Sbjct: 362 AIMQMVSHGFLSSMLFFLVGVIYNRVHDRDVYSFRGLSTLLPKYTVFVMIAFFASLGLPG 421 Query: 389 TSGFIGEFLVIMSVFQNSNT---VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ--- 442 S FI E ++ F ++ +AV S G++LSA Y LW +++ FG ++ + + Sbjct: 422 FSAFIAEAFSLVGAFNSTAIPTWMAVCGSVGILLSAGYFLWTLQRMFFGDTQLKGGEIWK 481 Query: 443 -QLKDLSLRE 451 L D++ RE Sbjct: 482 LALTDVNRRE 491 >gi|296124102|ref|YP_003631880.1| proton-translocating NADH-quinone oxidoreductase, chain M [Planctomyces limnophilus DSM 3776] gi|296016442|gb|ADG69681.1| proton-translocating NADH-quinone oxidoreductase, chain M [Planctomyces limnophilus DSM 3776] Length = 599 Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 167/407 (41%), Positives = 259/407 (63%), Gaps = 13/407 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++LG+DG+ + +++LTT L IL SW I+E E+ L+LE+ +IG FL+ D++ Sbjct: 130 EFYLGLDGLGMAMILLTTGLCVSAILVSWSEIRERSAEFYAGILILEAGLIGVFLAYDLI 189 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT---- 191 LFY FFE +L+P+F+ IGVWGG +R YAA KFF+YT GS+ ML +V + E ++ Sbjct: 190 LFYAFFEFTLLPLFLTIGVWGGPKRRYAAGKFFIYTLAGSLVMLLGLVSLVVETQSLTGI 249 Query: 192 SSIIDLYAMSK------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 S+ + M++ P Q +++ F IK+PMFPFHTWLP HV+APTAGSV Sbjct: 250 STPFSMPDMARALQDQPLPVETQTILFLLIATGFLIKVPMFPFHTWLPLVHVEAPTAGSV 309 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFA-PVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 LAG++LK+G YG +R +P+ P AS P++ L++I ++Y SL + QTDIK+++A Sbjct: 310 DLAGVLLKLGCYGFLRIAIPMLPDASLTVGQPLVAILAVIGVVYGSLCAYHQTDIKRMVA 369 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSSIAH+G +G+F+ G+ G + M++HGL + ALF VG+I++R HTR + GG Sbjct: 370 YSSIAHLGVCMLGLFALNAEGLSGGICMMINHGLATGALFSLVGMIHERYHTRSLTDLGG 429 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + +++ + A++GLPG +GFIGE L ++ +FQ S AV+ + GVVLSA Y Sbjct: 430 LASRIPVLSALLVFISFASIGLPGLNGFIGEILSLLGMFQVSAVYAVIGTTGVVLSAWYL 489 Query: 425 LWLYRKVVFGV--SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L + + +FG + DL++RE ++P+A+ + G++P Sbjct: 490 LRMVQVGLFGPLREPAGDHSHVSDLTVREGLAIWPLALACLGLGLFP 536 >gi|332708374|ref|ZP_08428352.1| NADH dehydrogenase subunit M [Lyngbya majuscula 3L] gi|332352867|gb|EGJ32429.1| NADH dehydrogenase subunit M [Lyngbya majuscula 3L] Length = 505 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 173/459 (37%), Positives = 278/459 (60%), Gaps = 23/459 (5%) Query: 37 ALGISTINFIFSLF-VWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 ALG++ ++F+ ++ W ++ S FQ+ E Y WI S+ + VDG+S+ L+VL+ Sbjct: 6 ALGVAVLDFVLIIYGFWHHYNFQNSEFQLRESYTWIPQLGISWSVAVDGLSMPLIVLSGL 65 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T I+++WK I R + L + S +G F + D++LF++ +E L+P++++I + Sbjct: 66 VTTLAIVAAWK-INHKPRLFYFLMLFMYSAQLGVFAAQDLVLFFLMWELELLPVYLLISI 124 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMW 212 WGG +R YAA KF LYT GS+F+L A +VM + T + D+ + +P +++ + Sbjct: 125 WGGKQRFYAATKFILYTAAGSVFILVAALVMAFAGDTVTF-DMQTLGNRHYPIALELVAY 183 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 F ++ +K+P+FP HTWLP+AH QA S+ LAG++LKMGGYG +R L + P A Sbjct: 184 AGFLIAYGVKLPIFPLHTWLPDAHSQASAPVSMILAGVLLKMGGYGLMRMNLEMLPHAHT 243 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 YFAPV+ L ++ IIY +L++ Q ++K+ +AYSSI+HMG+V IGI S + G+ GA+ Q Sbjct: 244 YFAPVLAVLGVVNIIYGALLAFSQDNLKRRLAYSSISHMGFVLIGIASFTELGMNGAILQ 303 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 MLSHGL+++ALFF GV Y+R HT + GG+ MP+ + +MA++ LPG SGF Sbjct: 304 MLSHGLIAAALFFLSGVTYERTHTLAMAKMGGMAKEMPKAFALFTAGSMASLALPGMSGF 363 Query: 393 IGEFLVIMSVFQNSN-------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQ 443 +GE V + V +S + +LA+ G++L+ +Y L L R+V FG + + + Sbjct: 364 VGELSVFLGVTTSSVYSSSFKVVIVLLAAVGLILTPIYLLSLLRQVFFGKNNSGIIIEKY 423 Query: 444 LKDLSLRE----RCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L D RE C++ PI + G+YP + T+ V Sbjct: 424 LGDAKAREIFVTACLLIPI----IGIGLYPKLVTQTYDV 458 >gi|255037645|ref|YP_003088266.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dyadobacter fermentans DSM 18053] gi|254950401|gb|ACT95101.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dyadobacter fermentans DSM 18053] Length = 482 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 177/426 (41%), Positives = 271/426 (63%), Gaps = 7/426 (1%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKS 106 ++F W FD S Q Y W+ S+ G+DGIS+LLV+LTTFLTP ILS++K+ Sbjct: 40 AIFTWLQFDPAAGS-QFGFKYAWLASGGISFAAGIDGISMLLVLLTTFLTPLIILSAFKN 98 Query: 107 IQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYK 166 +N + L +E+ +IG F + D LFY+FFEA+LIP++ + +WGG RI +K Sbjct: 99 DYKNPASFYSLILFMEAALIGVFTATDAFLFYLFFEAALIPVYFLSAIWGGENRIKVTFK 158 Query: 167 FFLYTFFGSIFMLFAIVVMCWE---KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKI 223 FF+YT FGS+FM A+V + ++ + +S I Y + P + W AFF +FAIK+ Sbjct: 159 FFIYTIFGSLFMFVALVYLYYQTPGEHSSEIAAFYQLQLSPAAQGLLFW-AFFIAFAIKM 217 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 P+FPFHTW P+ + ++PT ++ L+GIMLKMG YG IR LLP+ PL + + + LS+ Sbjct: 218 PLFPFHTWQPDTYTESPTPATMLLSGIMLKMGVYGLIRLLLPIVPLGMEQWGFLAMILSV 277 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 I IIY S++++ Q+D+K LIAYSS AH+G + G+FS +G++GA+ QML+HG+ L Sbjct: 278 IGIIYGSIIAIQQSDMKTLIAYSSFAHVGLMAAGVFSSSLNGLQGALIQMLAHGINVIGL 337 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 FF V +IY R TR + GG+ + P +V M+ + ++ LP T+GF+GEFL++ SVF Sbjct: 338 FFIVDIIYSRTKTRYLDQLGGITQSTPHLSVYFMILLLGSVALPLTNGFVGEFLLLSSVF 397 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 + +A ++L ++Y L L++K +FG K + V+ +DL+ ER ++ P+ V+ Sbjct: 398 AYKGWLGAVAGLTIILGSVYMLRLFQKSMFG-PKSKWVEGFQDLTASERAVLLPLIVMVF 456 Query: 464 FFGIYP 469 + GIYP Sbjct: 457 WIGIYP 462 >gi|116754365|ref|YP_843483.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methanosaeta thermophila PT] gi|116665816|gb|ABK14843.1| F420H2 dehydrogenase subunit M [Methanosaeta thermophila PT] Length = 502 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 187/494 (37%), Positives = 277/494 (56%), Gaps = 22/494 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 +SI+ +P +G + + G R VAL S + +L +++ FDK Q + Sbjct: 6 ISIMIAVPLVGAVLAFLTRSRGQARL----VALIASLVPLALALQMYTEFDKSSKLMQFV 61 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR--EYMIAFLVLE 122 E Y W+ Y +GVD IS LV+LT ++ ++ +W EN R ++ L+ E Sbjct: 62 ESYDWVPSIGVRYTVGVDCISFPLVLLTAIVSVLVVIYAWG---ENHRPNQFFALLLLNE 118 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 V+G F +LD LFYIF+E LIPMF +IG+WGG + Y+A KFF+YT S+ ML AI Sbjct: 119 VGVLGVFTALDFFLFYIFWEIVLIPMFFLIGIWGGPRKDYSAIKFFIYTHVASLVMLLAI 178 Query: 183 VVMCWEKKT---SSIIDLYAMSK-------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 M + + S D+ + + FP + ++ F +K+P FPFHTWL Sbjct: 179 FAMYFTYRLPDGSRTFDMLTLLQATSDKTVFPPGLINAIFAGLLFGFLVKMPAFPFHTWL 238 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHV+APTAGSV LA ++LKMGGYG R +LP+ P + F VI + +++IIY + + Sbjct: 239 PDAHVEAPTAGSVVLAALLLKMGGYGIFRVILPMLPHVDKAFVTVIAVIGVLSIIYGAFL 298 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q DIKKL+AYSSI+HMG+VT+G + ++GAMFQ SHG+++ ALF G I Sbjct: 299 ALAQKDIKKLVAYSSISHMGFVTLGAVAFTWLSIQGAMFQQFSHGIITCALFMSAGTIQH 358 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 + TR I GGL MP++A +M+ +A++GLPG SGF+ EF+V+ + +L Sbjct: 359 SVGTRIISELGGLADRMPKFASLMLAAFLASLGLPGMSGFVAEFMVLTGSYPTFPVYTML 418 Query: 413 ASFGVV-LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 F V ++A Y LW +KV+FG +K L D E + I LT+ FG+ P Sbjct: 419 VVFTSVGVTAGYHLWACQKVLFG-PILKKYLDLHDPHAYEILAMSAIVFLTLLFGLQPAL 477 Query: 472 IRDTFSVPLSSIIE 485 I D ++E Sbjct: 478 ITDMMGTAAHQVME 491 >gi|237751592|ref|ZP_04582072.1| NADH-quinone oxidoreductase subunit M [Helicobacter bilis ATCC 43879] gi|229372958|gb|EEO23349.1| NADH-quinone oxidoreductase subunit M [Helicobacter bilis ATCC 43879] Length = 536 Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 160/418 (38%), Positives = 263/418 (62%), Gaps = 11/418 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIF 140 VDGIS+ L++LT F+ + + + +++ + +++ L LE++++ F+S ++L+FY Sbjct: 56 VDGISLFLIILTAFI--IFLANIYLQRRDDAKPFVVCLLSLEAILMALFVSQNVLMFYTC 113 Query: 141 FEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV---MCWEKKTSSIIDL 197 +E +L+P+ ++GVWG ++IY KFF+YTF S+ ML AI+ +C+E+ DL Sbjct: 114 WELALLPVLYMVGVWGSGQKIYIGLKFFVYTFASSLMMLLAILYIGYLCYEQLGYWSFDL 173 Query: 198 ----YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 K P Q W+++ FF S A+KIP+ P HTWLP+ + +AP GSV L+ ++ K Sbjct: 174 GVWLSGDLKIPLDTQIWLFLGFFVSIAVKIPIIPLHTWLPHIYSEAPALGSVMLSALLSK 233 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 MG Y +RF+LPLFP AS +F P++ L++I ++YA +++ Q DIKK+IAYSSI+HMG Sbjct: 234 MGTYALLRFVLPLFPDASVHFMPIVSVLAVIMVVYAGIIAFKQKDIKKVIAYSSISHMGI 293 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V +GIF+ G+ GA+F M++HG+ S LF G++Y R TR + +GG+ H MP Y+ Sbjct: 294 VVLGIFAFNNEGISGAIFMMVAHGVTSGGLFMLAGMLYYRTMTRHVDDFGGVAHVMPHYS 353 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 + ++N+GLP T GF+GEFL + FQ S + +A ++++A Y L+L++ V + Sbjct: 354 TFFAIVMLSNVGLPLTIGFVGEFLSLYGYFQTSPIMTAIAGTTLIIAASYMLYLFKNVFY 413 Query: 434 GVSKCEKV-QQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII-ENYTL 489 G K + Q LKDL +E C++ PIA + ++ G++P + V + ++ YTL Sbjct: 414 GTLKQTHITQSLKDLGFKEFCVLGPIAFVIIWLGVFPNTLLKPMQVSVQQLVGTTYTL 471 >gi|254674117|emb|CBA09901.1| NADH-ubiquinone oxidoreductase, chain M [Neisseria meningitidis alpha275] Length = 343 Score = 309 bits (791), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 147/294 (50%), Positives = 217/294 (73%), Gaps = 5/294 (1%) Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 A+V + ++ + SI+D + + P +Q ++ AFF SFA+K+PMFP HTWLP+AHV+AP Sbjct: 27 AMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAP 86 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GS+ LA I LK+G YG +RF+LP+ P A++YFAPVI LSLIA+IY +V++VQTD+K Sbjct: 87 TGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFAPVIIVLSLIAVIYIGMVALVQTDMK 146 Query: 301 KLIAYSSIAHMGYVTIGIF---SGMKS--GVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 KL+AYSSI+HMG+VT+G+F +G + ++GA+ QM+SHG VS+A+F C+GV+YDRLH Sbjct: 147 KLVAYSSISHMGFVTLGMFLFVNGQLNDWALKGAIIQMISHGFVSAAMFMCIGVMYDRLH 206 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR+I YGG+V+ MP++A MM+F MAN GLP TSGF+GEF+VIM + + V LA+ Sbjct: 207 TRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMVIMGAVKVNFWVGALAAM 266 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++ A Y+LW+Y++V++G V ++KD++ RE ++ +AV + G+YP Sbjct: 267 TLIYGASYTLWMYKRVIYGAIHNPHVAEMKDINCREFAILAVLAVAVLGMGLYP 320 >gi|312183569|gb|ADQ42354.1| NADH:ubiquinone oxidoreductase M [Methanosaeta harundinacea] Length = 499 Score = 309 bits (791), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 179/495 (36%), Positives = 280/495 (56%), Gaps = 20/495 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 +S++ LP L V F+ GR + + +G S + SL ++ FDK ++ Q + Sbjct: 5 ISLMIALPLLAAVVAFFA-----GRLAKYAALIG-SLVPLAISLQMFQEFDKTSNAMQFV 58 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E Y W+ Y +GVDGI + L++L+T ++ ++ SW + ++ L+ E Sbjct: 59 ESYDWVPALGVKYTVGVDGIGLPLILLSTIVSILVVVYSWGE-KTRSNQFFALLLLNEVG 117 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V+G F +LD LFYIF+E LIPMF +IG+WGG + YAA KFF+YT S+ ML +I Sbjct: 118 VLGVFTALDFFLFYIFWEVVLIPMFFLIGIWGGPRKDYAAIKFFIYTHVASLIMLLSIFG 177 Query: 185 MCWEKKTSSIIDLYAM----------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + + +T + + M + F + ++ F +K+P PFHTWLP+ Sbjct: 178 LYFSYRTPEGMRTFDMMTLLQATGDSTIFSPMLLNLIFFGLLFGFLVKMPAVPFHTWLPD 237 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+APTAGSV LA ++LKMGGYG R ++P+ P S ++ ++ + +I+IIY +++ Sbjct: 238 AHVEAPTAGSVLLAALLLKMGGYGLFRIVMPMLPNVSSHYITLMAVIGVISIIYGGFLAL 297 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q D+KK++AYSS++HMGYV +G + V+GAMFQ SHGL++ LF G I Sbjct: 298 AQKDLKKMVAYSSVSHMGYVLLGAGALSVLSVQGAMFQQFSHGLITCVLFMSAGTIQHTA 357 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 TR I GGL MP++AV+M+ MA++GLPG GF+ E V+ +QN ++ Sbjct: 358 GTRIISDLGGLSDRMPKFAVLMLAGFMASLGLPGMCGFVAEVSVLAGAYQNLPVYVLIVI 417 Query: 415 F-GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 F G+ ++A Y LW +KV+FG +K LKD E + + +L ++FG+ P I Sbjct: 418 FGGIAVTAGYHLWAMQKVMFG-PILKKYLDLKDPHSYEILSMSILILLIIYFGVQPATIT 476 Query: 474 DTFSVPLSSIIENYT 488 D V +++ +T Sbjct: 477 DIMGVAAQPLVDPFT 491 >gi|298491660|ref|YP_003721837.1| proton-translocating NADH-quinone oxidoreductase subunit M ['Nostoc azollae' 0708] gi|298233578|gb|ADI64714.1| proton-translocating NADH-quinone oxidoreductase, chain M ['Nostoc azollae' 0708] Length = 534 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 181/497 (36%), Positives = 293/497 (58%), Gaps = 29/497 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLF-VWSVFDKGR 59 + +P+LS + FLP + I F ++G LG++ +F +F +W +D Sbjct: 4 IQIPWLSAIIFLPLVASLAIPFMPDKDGKTVRWYG--LGVAFADFALMIFALWQGYDFQS 61 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S+ QM E Y WI ++ L +DG+S+ L++LT + + ++WK + R + Sbjct: 62 SALQMTESYAWIPQIGFNWALAIDGLSMPLILLTGLINTLAVFAAWK-VTNKPRLFYALM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LV+ S +G FL+ D+L+F++ +E L+P++++I +WGG R YAA KF +YT SIF+ Sbjct: 121 LVMYSAQLGVFLAQDLLMFFLMWEIELVPVYLLISIWGGKNRRYAATKFIIYTAAASIFI 180 Query: 179 LFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A M + + T ++ +L M ++P +++ ++ F ++ +K+P+FPFHTWLP+AH Sbjct: 181 LVAGFAMAFYGDNFTFNMTEL-GMKEYPQALELALYTGFLIAYGVKLPIFPFHTWLPDAH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A GS+ LAG++LKMGGY IRF L + A FAP++ L ++ I+Y + ++ Q Sbjct: 240 GEASAPGSMVLAGVLLKMGGYALIRFNLEMLTDAHVVFAPILAILGVVNIVYGACCALAQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 T++K+ +AYSSIAHMG+V IGI S + G+ GA+ QMLSHGL++++LFF GV Y+R HT Sbjct: 300 TNLKRCLAYSSIAHMGFVLIGIASYTEIGISGAVLQMLSHGLIAASLFFLSGVTYERTHT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM-----SVFQNSNTVAV 411 + GG+ MPR + + +MA++ LPG SGF+GE +V + V+ +S V V Sbjct: 360 LMMDKMGGMAKVMPRTFALFTIGSMASLALPGMSGFVGELMVFLGIGTSDVYSSSFKVVV 419 Query: 412 --LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK----DLSLRE----RCMVYPIAVL 461 L++ GV+L+ +Y L + R+V +G K K L D+ RE C++ PI Sbjct: 420 IFLSAVGVILTPIYLLSMLRQVFYG--KQSKDLHLDIVVADVKPRELFITACLLLPI--- 474 Query: 462 TVFFGIYPVPIRDTFSV 478 + G YP T+ V Sbjct: 475 -IGIGFYPKLATQTYDV 490 >gi|18640465|ref|NP_570142.1| NADH-ubiquinone oxidoreductase chain 4 [Hypocrea jecorina] gi|18496646|gb|AAL74179.1|AF447590_16 NADH-ubiquinone oxidoreductase chain 4 [Hypocrea jecorina] Length = 489 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 177/451 (39%), Positives = 284/451 (62%), Gaps = 4/451 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL S IN I SL ++ +F+ + FQ ++ ++ + F Y LGVDGISI V+LTT + Sbjct: 38 IALVTSIINLIISLVIFILFNSSTNQFQFVQEHYNVQSFDIY-LGVDGISIYFVLLTTII 96 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P +LS+W SI+EN + Y+I L+LE++++ FL+LD+++FYIFFE+ L P+F++IG++ Sbjct: 97 MPIALLSNWDSIKENVKSYLIIMLLLETLLLAVFLALDIMVFYIFFESILPPLFILIGIF 156 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF 215 G ++ A+Y FLYT +GS+F+L +I+ ++ L+ ++ F + Q +++I Sbjct: 157 GSDNKVNASYYLFLYTLWGSLFLLLSILSTSSTMGSTDFDTLFKLN-FEYKTQIFLFIGI 215 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 F +FA+K P + WL AHV++P GS+ LAGI+LK+ YG R +LP+ P A + Sbjct: 216 FIAFAVKTPTIFLNGWLLKAHVESPLGGSIVLAGIVLKLSLYGIFRLILPMLPKACLDYT 275 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 V++ +++I IIYAS ++ TDIK+LIAYSS+ H IGIFS G+EG++ L+ Sbjct: 276 FVVYTIAVITIIYASFSTIRTTDIKELIAYSSVCHAAVYLIGIFSNTLQGLEGSVVLGLA 335 Query: 336 HGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 HG VSS LF C GV+YDR TR I+ Y G+ MP ++ + T+ N G P T FIG Sbjct: 336 HGFVSSGLFICAGGVLYDRTGTRSIYFYRGMAQLMPILGILFFILTLGNCGTPLTLNFIG 395 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERC 453 EF+ + S+ + + V A +V SA YS++L+ +V FG S +++ + D++ RE Sbjct: 396 EFMSLYSIVERLPVLGVFACTSIVFSAAYSVYLFNRVSFGGSFTRFLEESVYDVNKREFL 455 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 M++ + T+ FGIYP I + P+++++ Sbjct: 456 MLFILVAFTIVFGIYPSLILNVLDYPVTNVL 486 >gi|160688722|gb|ABX45138.1| NADH dehydrogenase subunit 4 [Polysphondylium pallidum] Length = 533 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 164/403 (40%), Positives = 260/403 (64%), Gaps = 16/403 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 GVDGIS++ + LTT L CIL SW I+ + + Y++ L++E ++I F +D++ FYI Sbjct: 119 GVDGISMIFIWLTTILIMSCILISWNVIKTDIKFYLVNLLIIELLLINFFAVMDLVHFYI 178 Query: 140 FFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 +E+ LIP+ ++I +WG E+ AAY+ F+YT GSIFML ++ + + T+ D + Sbjct: 179 IYESILIPIVIMISMWGSREEKKLAAYQIFVYTLIGSIFMLASLGYLYYSLGTT---DYF 235 Query: 199 AMSKF----PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + + P ++Q ++I F FA+KIP+ P H WL AHV+APTAGSV LAGI+LK+ Sbjct: 236 LIKELIGIIPENMQKLIFIGIFVGFAVKIPIVPLHLWLLRAHVEAPTAGSVLLAGILLKL 295 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +RF + L P YF P+I LSLI+I+Y + +++Q DIK++IAYSSI+HM V Sbjct: 296 GGYGFLRFNIGLLPEMCTYFFPIIVGLSLISILYTGIATIMQLDIKRIIAYSSISHMNVV 355 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+FS + G+EG ++ M+SHGLVS LF C+GV+Y++ +R +++Y LVH MP +A+ Sbjct: 356 VLGLFSQVLQGIEGGIYLMVSHGLVSGGLFLCIGVLYEQYKSRLLYSYNNLVHVMPIFAI 415 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + + T+AN+ P TS FIGE L+ + + + VA + G++++ +YS WLY ++ F Sbjct: 416 IFFLLTLANIAFPITSSFIGELLIFCGIIKKNIIVAFFGALGMIITVIYSFWLYNRIFFD 475 Query: 435 -------VSKCEKV-QQLKDLSLRERCMVYPIAVLTVFFGIYP 469 V+ KV ++ +D++ RE + + + + FGI P Sbjct: 476 NGMLTTKVNFVNKVGEKYRDINKRELLSICIMLIFVMIFGIKP 518 >gi|37526966|ref|NP_930310.1| NADH dehydrogenase subunit M [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786399|emb|CAE15452.1| NADH dehydrogenase I chain M (NADH-ubiquinone oxidoreductase chain M) (NUO13) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 506 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 172/444 (38%), Positives = 266/444 (59%), Gaps = 27/444 (6%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F S HL +DG+S+L+VVLT L IL SW Q + + L + V+G Sbjct: 71 WIPRFGISIHLALDGLSLLMVVLTALLGLMAILCSWTENQPYQGFFHLNLLWILGGVMGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHRGSGGKTRITAATKFFIYTQASGLVMLIAIM 190 Query: 184 VMC---------WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + W +++ + ++QY + + FF +FA+K+P+ P H WLP+ Sbjct: 191 ALVLVHYNGTGEWTFSYQKLLN----TPMSHTVQYLLMLGFFIAFAVKMPVVPLHGWLPD 246 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH QAPTAGSV LAGI+LK GYG +RF LPLFP AS F P+ + ++ I Y + ++ Sbjct: 247 AHSQAPTAGSVDLAGILLKTAGYGLLRFGLPLFPEASHEFTPIAMWFGVLGIFYGAWMAF 306 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTDIK+LIAY+SI+HMG+V I I+SG + +GA+ QM++HGL ++ +F G +Y+RL Sbjct: 307 SQTDIKRLIAYTSISHMGFVLIAIYSGSQLAYQGAIIQMIAHGLSAAGMFILCGQLYERL 366 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 HTRD+ GGL + + + F +A +G+PGT F+GEF+++ F + ++ Sbjct: 367 HTRDMNLMGGLWKRVQFLPALSLSFAVATLGMPGTGNFVGEFMILFGSFSEFPLIITISV 426 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 FG+V +++Y+L++ ++ +G SK + + L+ + +RE +V + +L V G YP PI D Sbjct: 427 FGLVFASVYALYMMQRAYYGESKSD--EPLRRMDMREVSIVMVLLILLVVMGFYPQPILD 484 Query: 475 TFSVPLSSIIENYTLKTGYSDSVK 498 T + + +I +T YS S+ Sbjct: 485 TSAAAMDNI------QTWYSASIS 502 >gi|66046437|ref|YP_236278.1| NADH dehydrogenase subunit M [Pseudomonas syringae pv. syringae B728a] gi|298487559|ref|ZP_07005601.1| NADH-ubiquinone oxidoreductase chain M [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302185034|ref|ZP_07261707.1| NADH dehydrogenase subunit M [Pseudomonas syringae pv. syringae 642] gi|63257144|gb|AAY38240.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Pseudomonas syringae pv. syringae B728a] gi|298157943|gb|EFH99021.1| NADH-ubiquinone oxidoreductase chain M [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330900639|gb|EGH32058.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. japonica str. M301072PT] gi|330954551|gb|EGH54811.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae Cit 7] gi|330972918|gb|EGH72984.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. aceris str. M302273PT] Length = 510 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 193/504 (38%), Positives = 299/504 (59%), Gaps = 26/504 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + G + +AL T+ + L++W+ + Sbjct: 1 MILPWLILI---PFIGGLLCWLGERFGSTLPRW--IALLTMTLELVLGLWLWATGNFGYA 55 Query: 57 --KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G +E++H WI F HL +DG+S+L+++LT L +L SWK IQ Sbjct: 56 PVPGADPTWTLEFHHPWITRFGIDVHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRKVG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + + + V+G FL++D+ +F+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLMWILGGVVGVFLAIDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAI 221 FF++T + ML AI+ V+ +T I YA +K +Y + + FF +FA+ Sbjct: 176 FFIFTQASGLIMLVAILGLVLVHFNQTGVITFAYADLLKTKLAPGTEYILMLGFFIAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H+WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L Sbjct: 236 KLPVVPLHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 L+ I Y + ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++G + QM++HGL ++ Sbjct: 296 GLVGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGVLIQMIAHGLSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL + + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILSGQLYERLHTRDMREMGGLWSRIAYIPAISLFFAAASLGLPGTGNFVGEFLILLG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F +S + +A+ G+V ++YSL + + FG SK ++V LK + RE MV +AVL Sbjct: 416 SFASSPWITAIATSGLVFGSVYSLIMIHRAYFGPSKSDEV--LKGMDGREMIMVLGLAVL 473 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIE 485 V G++P P DT + + + + Sbjct: 474 LVVLGVFPQPFLDTSAATMHGVQQ 497 >gi|197116568|ref|YP_002136995.1| NADH dehydrogenase I subunit M [Geobacter bemidjiensis Bem] gi|197085928|gb|ACH37199.1| NADH dehydrogenase I, M subunit [Geobacter bemidjiensis Bem] Length = 494 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 173/463 (37%), Positives = 287/463 (61%), Gaps = 14/463 (3%) Query: 35 GVALGISTINFIFSLF------VWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISIL 87 G AL ++ + + F + + + F + E WI+ F Y LG+DGIS + Sbjct: 34 GFALAVALVELALAAFPLLGTSLSATYPSAPKGFFLFEDLPWIERFGIRYTLGMDGISQI 93 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 +V+LT+F+T +L SWK I+E Y L L+ + G FLSLD+ LFY+FFEA LIP Sbjct: 94 MVLLTSFITVVAVLISWKQIKERAPVYYALLLALQCSIQGVFLSLDLFLFYLFFEAMLIP 153 Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAM--SK 202 + + GVWG +Y+A KFFLYTF GS+ ML +I+ +M + S L A+ + Sbjct: 154 IVFLSGVWGDGRPVYSAIKFFLYTFVGSLLMLVSIITLYLMHGAQTGSYTFALPALVQTS 213 Query: 203 FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRF 262 P+ + W++ F +FA+KIP+FP H+W P+A+ AP AG++ LA ++ K G YG IRF Sbjct: 214 VPYGLALWLFAGFLVAFAVKIPLFPLHSWQPDAYADAPIAGTLILASLLSKTGAYGLIRF 273 Query: 263 LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGM 322 PLFP A++ F PV++ ++ I Y + ++ Q D+K+L+AYSS++HMG++ +GI + Sbjct: 274 AYPLFPEAARAFTPVLYLAAVFVISYGAWIAFAQKDMKRLVAYSSLSHMGFIALGIAAWS 333 Query: 323 KSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMA 382 + GA+ QM++H + + ALF VG++ +R +RD+ AYGG+ +P + + F MA Sbjct: 334 PLALSGALLQMVNHAVTTGALFVVVGMLDERAGSRDLPAYGGIWEKVPALSFFFLFFCMA 393 Query: 383 NMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ 442 + GLPG + F+GEFLV++ F+ + A+ A G+VL+ +Y++ L ++V+F + K Sbjct: 394 SAGLPGLNNFVGEFLVLVGAFKVAPAAALGAFLGIVLTLIYTVRLVQEVLF--VRERKPL 451 Query: 443 QLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 +LKDL++RE ++ +A++ V+ G++P P+ + F P++ +++ Sbjct: 452 ELKDLTMREAGVLAILALVAVYLGVHPSPVLELFKGPIALLVK 494 >gi|269128601|ref|YP_003301971.1| proton-translocating NADH-quinone oxidoreductase subunit M [Thermomonospora curvata DSM 43183] gi|268313559|gb|ACY99933.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermomonospora curvata DSM 43183] Length = 516 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 172/492 (34%), Positives = 283/492 (57%), Gaps = 20/492 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRS 60 + P+LS++ LP LG + + L GR + VALG+S + + + + F+ G Sbjct: 3 DFPWLSVLIALPALGALGV---ALLPRGRDALAKQVALGVSVLVAALAFVMAAGFEVGGP 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--------------K 105 Q E Y WI F + LGVDG++++L++++ L P I++SW + Sbjct: 60 RHQFEEVYEWIPAFGVHWALGVDGVALVLILMSVVLVPLVIVASWGEADRYGGVVAEGER 119 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 ++ + Y L LE+M++G F + D+ LFYIFFE L+P++ +IG++GG +R YAA Sbjct: 120 PPAKSVKTYFALILALEAMMVGVFAATDVFLFYIFFEVMLVPVYFLIGIFGGPQRSYAAV 179 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPM 225 KF LY+ G + ML A++ + + + ++ K ++ W+++ FF +FAIK PM Sbjct: 180 KFLLYSLLGGLLMLVAVIALYVQGPNTFLMSELQGLKLDPAVAKWLFLGFFIAFAIKAPM 239 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 P HTWLP+ QAP V + G++ K+G YG +RF L LFP AS++ AP + ++I+ Sbjct: 240 VPVHTWLPDTAAQAPAGALVLIVGVLDKVGTYGMLRFCLELFPEASKWAAPGVLTFAVIS 299 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +IY +++++ Q D+K+LIAY+SI+H G++ +GIF+ G GA M++HG + ALF Sbjct: 300 VIYGAVLAIGQVDLKRLIAYTSISHFGFIVLGIFAMTSQGQSGAALYMVNHGFSTGALFL 359 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 VG + R + + A+GG+ P A ++ ++ + LPG + F+ EFLV++ F Sbjct: 360 IVGFLIVRRGSARVDAFGGVQKVAPLLAGAFLIAGLSGLSLPGLAPFVSEFLVLVGTFSR 419 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 AV+A+ G+VL+A+Y LW+Y++ + G E V KDLS RE + PI + V Sbjct: 420 YQVAAVIAALGIVLAAVYILWMYQRTMNG-PTAEAVAGFKDLSRRELTAIAPILAIIVAL 478 Query: 466 GIYPVPIRDTFS 477 G +P P+ D Sbjct: 479 GFFPKPVLDVID 490 >gi|330981359|gb|EGH79462.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 510 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 193/504 (38%), Positives = 299/504 (59%), Gaps = 26/504 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + G + +AL T+ + L++W+ + Sbjct: 1 MILPWLILI---PFIGGLLCWLGERFGSTLPRW--IALLTMTLELVLGLWLWATGNFGYA 55 Query: 57 --KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G +E++H WI F HL +DG+S+L+++LT L +L SWK IQ Sbjct: 56 PVPGADPTWTLEFHHPWITRFGIDVHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRKVG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + + + V+G FL++D+ +F+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLMWILGGVVGVFLAIDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAI 221 FF++T + ML AI+ V+ +T I YA +K +Y + + FF +FA+ Sbjct: 176 FFIFTQASGLIMLVAILGLVLVHFNQTGVITFAYADLLKTKLTPGTEYILMLGFFIAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H+WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L Sbjct: 236 KLPVVPLHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 L+ I Y + ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++G + QM++HGL ++ Sbjct: 296 GLVGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGVLIQMIAHGLSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL + + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILSGQLYERLHTRDMREMGGLWSRIAYIPAISLFFAAASLGLPGTGNFVGEFLILLG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F +S + +A+ G+V ++YSL + + FG SK ++V LK + RE MV +AVL Sbjct: 416 SFASSPWITAIATSGLVFGSVYSLIMIHRAYFGPSKSDEV--LKGMDGREMIMVLGLAVL 473 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIE 485 V G++P P DT + + + + Sbjct: 474 LVVLGVFPQPFLDTSAATMHGVQQ 497 >gi|71735604|ref|YP_275290.1| NADH dehydrogenase subunit M [Pseudomonas syringae pv. phaseolicola 1448A] gi|289625438|ref|ZP_06458392.1| NADH dehydrogenase subunit M [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649280|ref|ZP_06480623.1| NADH dehydrogenase subunit M [Pseudomonas syringae pv. aesculi str. 2250] gi|71556157|gb|AAZ35368.1| NADH-quinone oxidoreductase, M subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323799|gb|EFW79883.1| NADH dehydrogenase subunit M [Pseudomonas syringae pv. glycinea str. B076] gi|320327938|gb|EFW83943.1| NADH dehydrogenase subunit M [Pseudomonas syringae pv. glycinea str. race 4] gi|330866826|gb|EGH01535.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889649|gb|EGH22310.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. mori str. 301020] gi|330987953|gb|EGH86056.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010716|gb|EGH90772.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 510 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 193/504 (38%), Positives = 299/504 (59%), Gaps = 26/504 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + G + +AL T+ + L++W+ + Sbjct: 1 MILPWLILI---PFIGGLLCWLGERFGSTLPRW--IALLTMTLELVLGLWLWATGNFGYA 55 Query: 57 --KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G +E++H WI F HL +DG+S+L+++LT L +L SWK IQ Sbjct: 56 PVPGADPTWALEFHHPWITRFGIDVHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRKVG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + + + V+G FL++D+ +F+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLMWILGGVVGVFLAIDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAI 221 FF++T + ML AI+ V+ +T I YA +K +Y + + FF +FA+ Sbjct: 176 FFIFTQASGLIMLVAILGLVLVHFNQTGVITFAYADLLKTKLAPGTEYILMLGFFIAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H+WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L Sbjct: 236 KLPVVPLHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 L+ I Y + ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++G + QM++HGL ++ Sbjct: 296 GLVGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGVLIQMIAHGLSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL + + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILSGQLYERLHTRDMREMGGLWSRIAYIPAISLFFAAASLGLPGTGNFVGEFLILLG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F +S + +A+ G+V ++YSL + + FG SK ++V LK + RE MV +AVL Sbjct: 416 SFASSPWITAIATSGLVFGSVYSLIMIHRAYFGPSKSDEV--LKGMDGREMIMVLGLAVL 473 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIE 485 V G++P P DT + + + + Sbjct: 474 LVVLGVFPQPFLDTSAATMHGVQQ 497 >gi|75909008|ref|YP_323304.1| NAD(P)H-quinone oxidoreductase subunit 4 [Anabaena variabilis ATCC 29413] gi|123745111|sp|Q3M9C7|NU4C3_ANAVT RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 3; AltName: Full=NAD(P)H dehydrogenase I, chain 4 3; AltName: Full=NDH-1, chain 4 3 gi|75702733|gb|ABA22409.1| NADH dehydrogenase subunit M [Anabaena variabilis ATCC 29413] Length = 537 Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 288/493 (58%), Gaps = 18/493 (3%) Query: 1 MNL---PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 MNL P+L+ + LP + I ++G+ + + + + F W +D Sbjct: 1 MNLIEFPWLTAIIALPLVAALAIPIIPDKEGKTVRWYGLGVAFADFALMIAAF-WHYYDF 59 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 S++Q +E YHW+ ++ + VDG+S+ L++LT + I ++WK + R + Sbjct: 60 QSSTYQFVEKYHWLPQIGLNWSVAVDGLSMPLLLLTGLINTLAIFAAWK-VTNKPRLFYG 118 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LV+ S +G F++ D+LLF++ +E L+P++++I +WGG +R YAA KF LYT SI Sbjct: 119 LMLVMYSAQLGVFVAQDLLLFFLMWEIELVPVYLLISIWGGPKRRYAATKFILYTAAASI 178 Query: 177 FMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F+L A + + T + I M ++P +I+ + F +F +K+P+FP HTWLP+A Sbjct: 179 FILVAGFALAFSGDTVTFDIAALGMKEYPKAIELLAYAGFLIAFGVKLPIFPLHTWLPDA 238 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A GS+ LAG++LKMGGY IRF + + P A YFAPV+ L ++ I+Y + + Sbjct: 239 HGEASAPGSMILAGVLLKMGGYALIRFNIEMLPDAHVYFAPVLAILGVVNIVYGACCAFA 298 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QT++K+ +AYSSIAHMG+V IG+ S + GV GA+ QM+SHGLV+++LFF GV Y+R H Sbjct: 299 QTNLKRRLAYSSIAHMGFVLIGLASYTEIGVSGAVLQMVSHGLVAASLFFLTGVTYERTH 358 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM-----SVFQNSNTVA 410 T + GG+ MP+ + MA++ LPG SGF+GE +V + V+ +S V Sbjct: 359 TLLMDKMGGIGKVMPKTFALYTAGAMASLALPGMSGFVGELMVFIGIATSDVYSSSFKVV 418 Query: 411 V--LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ---LKDLSLRERCMVYPIAVLTVFF 465 V L++ GV+L+ +Y L L R+V +G + E++ + D+ RE + + + + Sbjct: 419 VVLLSAVGVILTPIYLLSLLRQVFYG-KQSEELHLDAFIPDVKPRELFITASLLLPIIGI 477 Query: 466 GIYPVPIRDTFSV 478 G+YP I T+ V Sbjct: 478 GLYPKLITQTYDV 490 >gi|298245617|ref|ZP_06969423.1| proton-translocating NADH-quinone oxidoreductase, chain M [Ktedonobacter racemifer DSM 44963] gi|297553098|gb|EFH86963.1| proton-translocating NADH-quinone oxidoreductase, chain M [Ktedonobacter racemifer DSM 44963] Length = 537 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 190/468 (40%), Positives = 279/468 (59%), Gaps = 48/468 (10%) Query: 52 WSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 W F G+ F +DYF LG+DG+S+ LV+L FLT ++ WK + Sbjct: 77 WIRFQAGKIQFN-------VDYF----LGIDGLSLPLVILNAFLTVLAVIGGWK--KTRV 123 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE-------RIYAA 164 ++Y+ L LE V+G F++LD+ LF++F+E L PMF++IGVWG + R+Y+A Sbjct: 124 KDYLALILFLEGGVMGVFMALDLFLFFLFWEIELAPMFLLIGVWGNEQLKHGVPGRVYSA 183 Query: 165 YKFFLYTFFGSIFMLFAIVVMCWEK-------KTSSII---DLYAMSK----FPF----- 205 +KF LYTFFGSIFML I+++ + T+++ D M + PF Sbjct: 184 WKFLLYTFFGSIFMLAGILLLYFNNVGLPGATATANMAYFADPTHMVRGTIALPFLGVTA 243 Query: 206 SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 S+Q +++ F +FA+KIPMFPFHTWLP+AH APT SV LAGI+LKMG YG IR Sbjct: 244 SLQLVVFLLIFVAFAVKIPMFPFHTWLPDAHTDAPTEVSVILAGILLKMGAYGLIRVCFT 303 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGM--- 322 LFP FA + +++I IIY +L+ +VQ+D+KKLIAYSS++HMG V +G+ + Sbjct: 304 LFPQGVHDFAGWLAVIAIINIIYGALICLVQSDMKKLIAYSSVSHMGIVLLGVAAAAGAG 363 Query: 323 -----KSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMM 377 ++ + GA Q+ SHG++S LFFCVGVIYD HTRDI A+GG+ MP + + Sbjct: 364 DIAFRQAALTGATIQLFSHGIISGLLFFCVGVIYDVAHTRDIAAFGGVAKRMPILGTIFV 423 Query: 378 VFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSK 437 MA+ GLPG +GF+ E++V S F+ V +++ F ++ +A Y LW+ ++V FG Sbjct: 424 FAAMASAGLPGLAGFVAEYMVFTSSFKIWTVVTIISVFTMIFTAGYLLWMMKRVFFGPFN 483 Query: 438 CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 +K L D S RE ++ +A L V G+YP + D + LS I++ Sbjct: 484 -KKWDWLPDASPREMIPLFALAGLIVIIGVYPKLLIDVITPSLSHIMQ 530 >gi|37522105|ref|NP_925482.1| NADH dehydrogenase subunit 4 [Gloeobacter violaceus PCC 7421] gi|35213104|dbj|BAC90477.1| NADH dehydrogenase subunit 4 [Gloeobacter violaceus PCC 7421] Length = 498 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 183/461 (39%), Positives = 275/461 (59%), Gaps = 10/461 (2%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 AL ++ + F+ S V FD + Q E +W+ SY++ VDG+S+ LV+LT L Sbjct: 36 ALTVAGLTFLLSGLVAYNFDYTSTKPQFAETINWLPQLGISYNIAVDGLSLPLVLLTGLL 95 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 IL+SW+ + + R Y + L+L + V+GAF++ D +LF++ +E LIP++ +I +W Sbjct: 96 VVLSILTSWE-LNKRARLYYVLILLLSTGVLGAFMARDTILFFLAYEMELIPLYFLISIW 154 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-IDLYA--MSKFPFSIQYWMW 212 GG R YA KF LYTF + +L A + + +S ID+ A + +P + Q+ Sbjct: 155 GGKRREYAGTKFLLYTFLSGVALLVAFLSTYFFSGVNSFSIDVLANPATPYPLAFQFITL 214 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 FAIK+P+ P HTWLP+AHV+APTA SV LAG++LK+G YG +RF L +FP A+ Sbjct: 215 GLITLGFAIKMPLVPLHTWLPDAHVEAPTAVSVLLAGVLLKLGTYGIVRFGLGIFPEAAV 274 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 FA ++ L+ I ++YASL +M QTDIKK+IAYSSIAHMGYV +GI S ++G+ GAMFQ Sbjct: 275 QFAWLLSVLAAINVVYASLAAMAQTDIKKMIAYSSIAHMGYVVLGIASLNETGLGGAMFQ 334 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 M+SHG++S LF VG+IY++ TR++ GGL MP + MAN GLPG SGF Sbjct: 335 MISHGIISGLLFMLVGLIYEKSGTRELPKLGGLFATMPVVGAFFVGAAMANAGLPGMSGF 394 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV--SKCEKVQQLKDLSLR 450 + EF+V + VL FG+VL+A+Y L + + FG + E + ++K L Sbjct: 395 VAEFMVFCGGIERYPVATVLCIFGIVLTAIYMLAMLARAFFGKLPANLETMPRVKAWELI 454 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKT 491 ++ V+ V G++P F ++ +++ KT Sbjct: 455 PATVLL---VICVGLGLFPTLATGIFEPNVAQLVQQLDAKT 492 >gi|67924630|ref|ZP_00518042.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Crocosphaera watsonii WH 8501] gi|67853529|gb|EAM48876.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Crocosphaera watsonii WH 8501] Length = 533 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 181/495 (36%), Positives = 285/495 (57%), Gaps = 27/495 (5%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLF-VWSVFDKGR 59 +P+L+ + LP + F I L G R + ALG+ +NF +++ V + + Sbjct: 5 EIPWLTAIILLPLIAAFAIPLIPDKEGKTVRWY---ALGVGLLNFALTIYAVSNQYSFDN 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S FQ+ E Y W+ ++ +G+DG+S+ L+VL+ +T +L+SWK + + R + Sbjct: 62 SGFQLEETYPWVPQLGLNWSVGMDGLSMPLIVLSGLITTLALLASWK-VDKKPRLFYFLM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LVL S +G F + D+LLF+ +E L+P++++I +WGG +R+YAA KF LYT SIF+ Sbjct: 121 LVLYSAQMGVFAAQDLLLFFFMWELELVPVYILISIWGGPKRLYAATKFILYTALASIFI 180 Query: 179 LFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L A + M + T + I M +FP +Q + F +F +K+P+FP HTWLP+AH Sbjct: 181 LVAALGMAFYGDTVTFDIAQLGMKEFPMGLQVLAYAGFLIAFGVKLPIFPLHTWLPDAHS 240 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 QA S+ LAG++LKMGGYG IRF + + P A FAP++ L ++ ++Y + + QT Sbjct: 241 QASAPVSMILAGVLLKMGGYGLIRFNIEMLPDAHIQFAPLLLILGVVNVVYGAFTAFGQT 300 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ +A SSI+HMG+V IGI S + G+ GA+ QM+SHGL+++ALFF G Y+R HT Sbjct: 301 NLKRRLASSSISHMGFVLIGIASFTELGMNGAVLQMISHGLIAAALFFLCGSAYERTHTL 360 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVAV 411 + GGL MP+ + +MA++ LPG SGF+ E V + V + TV + Sbjct: 361 MMDEMGGLAEKMPKTFALFTAASMASLALPGMSGFVAELTVFLGVANSDVYSSTFKTVVI 420 Query: 412 -LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK---DLSLRE----RCMVYPIAVLTV 463 L + G++L+ +Y L + R V +G K E + K D RE C++ PI + Sbjct: 421 FLTAVGLILTPIYLLSMLRVVFYG-QKNEGLMLPKFNLDAKPREVFITACLLLPI----I 475 Query: 464 FFGIYPVPIRDTFSV 478 G+YP T+ V Sbjct: 476 GIGLYPKLATTTYDV 490 >gi|284097706|ref|ZP_06385722.1| NADH dehydrogenase I, M subunit [Candidatus Poribacteria sp. WGA-A3] gi|283830798|gb|EFC34892.1| NADH dehydrogenase I, M subunit [Candidatus Poribacteria sp. WGA-A3] Length = 361 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 160/357 (44%), Positives = 244/357 (68%), Gaps = 2/357 (0%) Query: 140 FFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA 199 +E ++IPM+ +I +WGG RI A KF LY+ GS+ +L I+ + E + + + + Sbjct: 1 LWELTMIPMYFMIILWGGPGRIAAGLKFALYSLTGSLLLLVGILGLYLEGGHTYDLLVLS 60 Query: 200 MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 + + Q+W+++AFF +FAIK+PM PFHTWLP+AH +APTAGSV LAG++LKMGGYG Sbjct: 61 EQTYSSTTQFWLFLAFFLAFAIKMPMVPFHTWLPDAHSEAPTAGSVILAGVLLKMGGYGF 120 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +RF LP+FP AS FAP I +LS++AI+Y +++ Q+D+KKL+AYSSI+HMG+VT+GIF Sbjct: 121 LRFCLPIFPDASAQFAPFILWLSVLAIVYGGYMALAQSDLKKLVAYSSISHMGFVTLGIF 180 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 G++GA+ QM +HG+ + ALF VG +YDR H+R I YGGL MPR+ + +F Sbjct: 181 VFNSQGIQGAILQMFNHGITTGALFLAVGQLYDRTHSRSIQDYGGLHKPMPRFVALFCLF 240 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 ++A+ GLPGT FIGEFLV++ +S +LA G+VL+A Y+LW+ ++VV G ++ Sbjct: 241 SVASFGLPGTCNFIGEFLVLVGTSSDSFVKVLLAMAGIVLAAAYTLWMLQRVVLGQARTP 300 Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDS 496 +L DL+ RE + P+ V+ ++ G+YP P + ++++I++ T G+S S Sbjct: 301 VASRLPDLNWRETATMIPLVVIVLWVGLYPAPFLNVMDASVTALIQHTT--GGHSAS 355 >gi|257485452|ref|ZP_05639493.1| NADH dehydrogenase subunit M [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 497 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 185/469 (39%), Positives = 285/469 (60%), Gaps = 21/469 (4%) Query: 36 VALGISTINFIFSLFVWSVFD------KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISIL 87 +AL T+ + L++W+ + G +E++H WI F HL +DG+S+L Sbjct: 18 IALLTMTLELVLGLWLWATGNFGYAPVPGADPTWALEFHHPWITRFGIDVHLALDGLSLL 77 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 +++LT L +L SWK IQ + + + + V+G FL++D+ +F+ F+E L+P Sbjct: 78 MILLTGLLGVLSVLCSWKEIQRKVGFFHLNLMWILGGVVGVFLAIDLFMFFFFWEMMLVP 137 Query: 148 MFVIIGVWGGSE------RIYAAYKFFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA 199 M+ +I +WG S RIYAA KFF++T + ML AI+ V+ +T I YA Sbjct: 138 MYFLIALWGHSSSDGKKTRIYAATKFFIFTQASGLIMLVAILGLVLVHFNQTGVITFAYA 197 Query: 200 ---MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 +K +Y + + FF +FA+K+P+ P H+WLP+AH QAPTAGSV LAGI+LK Sbjct: 198 DLLKTKLAPGTEYILMLGFFIAFAVKLPVVPLHSWLPDAHAQAPTAGSVDLAGILLKTAA 257 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 YG +RF LPLFP AS FAP+ L L+ I Y + ++ QTDIK+LIA+SS++HMG+V I Sbjct: 258 YGLLRFALPLFPNASAEFAPIAMTLGLVGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLI 317 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 GI+SG + ++G + QM++HGL ++ALF G +Y+RLHTRD+ GGL + + Sbjct: 318 GIYSGSQQALQGVLIQMIAHGLSAAALFILSGQLYERLHTRDMREMGGLWSRIAYIPAIS 377 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 + F A++GLPGT F+GEFL+++ F +S + +A+ G+V ++YSL + + FG S Sbjct: 378 LFFAAASLGLPGTGNFVGEFLILLGSFASSPWITAIATSGLVFGSVYSLIMIHRAYFGPS 437 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 K ++V LK + RE MV +AVL V G++P P DT + + + + Sbjct: 438 KSDEV--LKGMDGREMIMVLGLAVLLVVLGVFPQPFLDTSAATMHGVQQ 484 >gi|124359014|ref|YP_001023817.1| NADH dehydrogenase subunit 4 [Placozoan sp. BZ49] gi|114177227|gb|ABI53779.1| NADH dehydrogenase subunit 4 [Placozoan sp. BZ49] Length = 507 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 187/488 (38%), Positives = 283/488 (57%), Gaps = 25/488 (5%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCGRRSFFG----VALGISTINFIFSLFVWSVFDK--G 58 LS + FLP F+GVF +L + + R G +AL S I+ I + +W D+ G Sbjct: 5 LSTLLFLPPFMGVFHLLVAGTIRGSIRGSSGSLKRIALFWSFISLIGIIILWLSIDQEGG 64 Query: 59 RSSFQMIEYYHWIDYFCSYHL---------------GVDGISILLVVLTTFLTPFCILSS 103 + I++ + + H VDG+SI ++LT F+ P IL S Sbjct: 65 LTPLMKIDWIEGPERAPTKHFVGPILPIIMGGPLVFAVDGVSIYFLILTAFIVPCSILIS 124 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIY 162 W SI+ + ++I LVLE ++ F LD+ FYI FE LIPM++I+G+WG E++ Sbjct: 125 WNSIKYLVKSFLICMLVLEFLLYAVFSVLDIFWFYILFEGVLIPMYLILGIWGSREEKMQ 184 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF-PFSIQYWMWIAFFCSFAI 221 AAY FF YT GS+ ML + + T+ + L + + P ++Q W+++ F + A+ Sbjct: 185 AAYYFFFYTLIGSVIMLLCLFSLYNIHGTTDYLTLVSSNSIVPENMQKWLFLGIFLAMAV 244 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 KIP+FPFH WLP AHV+AP AGSV LAGI+LK+GGYG +R P+ PL +Q AP I + Sbjct: 245 KIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQNLAPAIIAM 304 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +I I+Y S + Q D+K+L+AYSS+AHMG +I + + G+ G++F ML+HG+VSS Sbjct: 305 GIIGIVYGSFGTCRQIDVKRLVAYSSVAHMGLASITLVTHDIIGLTGSIFIMLAHGIVSS 364 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 LF V ++YDR HTR I Y GL +MP +A +M++ ++AN+ P + GF+GE+L I+S Sbjct: 365 LLFILVTILYDRHHTRLIKYYRGLSISMPIWATIMIMTSLANVAAPPSGGFVGEYLSILS 424 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F + V GV+LSA+YS + ++ FG + +D++ RE + + +L Sbjct: 425 SFNWNPIVGFFVCSGVILSAVYSFYFANRITFG-GPSNLITFARDVNRREFYITASMILL 483 Query: 462 TVFFGIYP 469 F GI P Sbjct: 484 AFFIGICP 491 >gi|164565482|ref|YP_001649198.1| NADH dehydrogenase subunit 4 [Seriatopora caliendrum] gi|148669078|gb|ABR01625.1| NADH dehydrogenase subunit 4 [Seriatopora caliendrum] Length = 481 Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 186/432 (43%), Positives = 271/432 (62%), Gaps = 8/432 (1%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLG-----VDGISILLVVLTTFLTPFCILS 102 +L W FD G S FQ W + F + G VDG+S++ ++LTTFL P CIL Sbjct: 41 TLVFWGGFD-GESHFQFFSLVEW-NIFSTLDWGPIVFAVDGVSLVFLLLTTFLIPICILI 98 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 S KSI+ F+E+++ LE ++IG + D+LLFY+FFE LIPMF +IG+WG E Sbjct: 99 SQKSIKFLFKEFLLCLFFLEVLLIGVSIVFDLLLFYLFFEGILIPMFFLIGIWGSREEKV 158 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A +F + +F + + F I++ +++ ++ L K +IQ W + F +FA+K Sbjct: 159 RASFYFFFFYFYRLSLFFFIILFLYQRIGTTDYFLLLNIKLFLNIQKWALVGIFLNFAVK 218 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +P+ PFH WLP AHV+AP AGSV LAGI+LK+GGYG RF PLFP S Y++PVI F S Sbjct: 219 LPLIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGLFRFSWPLFPGGSLYWSPVIVFFS 278 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 ++A++Y L++ Q D K+L+AYSS+AHMG V +G+F+ + G+ GA+F ML+HG VSSA Sbjct: 279 VVAVVYGGLMTCRQIDFKRLVAYSSVAHMGLVPLGLFTHVIEGLIGALFLMLAHGFVSSA 338 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF V +YDR HTR I Y GL MP + + M++ ++ANMG P + F+GEF +++V Sbjct: 339 LFIGVTFLYDRHHTRLIKYYRGLTLTMPLFVITMLILSLANMGFPLSCNFVGEFFSLLAV 398 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 FQ V + GV+ SA+YSL L+ ++ FG + +DLS RE +++P ++ Sbjct: 399 FQYHYGVGMFVILGVLFSAIYSLSLFNRISFG-GGSNYLLFNRDLSRREISVIFPFLLII 457 Query: 463 VFFGIYPVPIRD 474 + GI P PI D Sbjct: 458 LGGGIVPFPIID 469 >gi|126657133|ref|ZP_01728304.1| NAD(P)H-quinone oxidoreductase subunit D [Cyanothece sp. CCY0110] gi|126621676|gb|EAZ92386.1| NAD(P)H-quinone oxidoreductase subunit D [Cyanothece sp. CCY0110] Length = 533 Score = 306 bits (784), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 181/501 (36%), Positives = 292/501 (58%), Gaps = 39/501 (7%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK--- 57 +P+L+ + +P + F I L G R + ALG+ NF +L +++VFD+ Sbjct: 5 EIPWLTAIILVPLVAAFAIPLIPDKEGKTVRWY---ALGVGLFNF--ALTIYAVFDQYNF 59 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 S FQ+ E Y W+ ++ +G+DG+S+ L+VL+ +T +L+SW+ +++ R + Sbjct: 60 NNSRFQLQETYPWVPQLGLNWSVGIDGLSMPLIVLSGLITTLALLASWR-VEKKPRLFYF 118 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LVL S +G F + D+LLF+ +E L+P++++I +WGG++R+YAA KF LYT SI Sbjct: 119 LMLVLYSAQMGVFAAQDLLLFFFMWELELVPVYILISIWGGNKRLYAATKFILYTALASI 178 Query: 177 FMLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L A + M + + T + L M +P +++ + F +F +K+P+FP HTWLP+ Sbjct: 179 FILVAALGMAFYGDAVTFDMAQL-GMKDYPLALEVLAYAGFLIAFGVKLPIFPLHTWLPD 237 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH QA + S+ LAG++LKMGGYG IRF + + P A FAP++ L ++ ++Y + + Sbjct: 238 AHSQASSPVSMILAGVLLKMGGYGLIRFNIEMLPDAHIKFAPLLLILGVVNVVYGAFTAF 297 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QT++K+ +A SSI+HMG+V IGI S + G+ GA+ QM+SHGL+++ALFF G Y+R Sbjct: 298 GQTNLKRRLASSSISHMGFVLIGISSFTELGMNGAVLQMVSHGLIAAALFFLCGSTYERT 357 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NT 408 HT + GGL MP+ + +MA++ LPG SGF+ E V + V + T Sbjct: 358 HTLMMDEMGGLAKKMPKTFALFTAASMASLALPGMSGFVAELTVFLGVANSDVYSSTFKT 417 Query: 409 VAV-LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK------DLSLRE----RCMVYP 457 V + L + G++L+ +Y L + R V +G EK + LK D RE C++ P Sbjct: 418 VVIFLTAVGLILTPIYLLSMLRVVFYG----EKNEGLKLDGFSLDAKPREVLITACLLLP 473 Query: 458 IAVLTVFFGIYPVPIRDTFSV 478 I + G+YP T+ V Sbjct: 474 I----IGIGLYPKLATTTYDV 490 >gi|20065790|ref|NP_612822.1|ND4_16049 NADH dehydrogenase subunit 4 [Acropora tenuis] gi|19908470|gb|AAM02913.1|AF338425_7 NADH dehydrogenase subunit 4 [Acropora tenuis] Length = 491 Score = 306 bits (784), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 200/461 (43%), Positives = 287/461 (62%), Gaps = 14/461 (3%) Query: 6 LSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS++ FL F+G + V+ S G + VAL S I L +W FD FQ+ Sbjct: 8 LSLIFFLLFMGGINVMKVSREDGVKLKK---VALEWSLAILISVLVLWGAFDL-EGQFQI 63 Query: 65 IEYYHWI-DYFCSYHLG-----VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 I WI ++ G +DG+S+ VLT L P CIL SWKSI+ F+E+++ Sbjct: 64 INRIEWIVSPALNFQWGPGVFALDGVSLFFFVLTALLIPICILISWKSIKHLFKEFLLCL 123 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIF 177 L LE++++G FL LD+LLFY+ FE LIPMF++IGVWG E++ A+Y FF YTF GS+F Sbjct: 124 LFLEALLVGVFLVLDLLLFYLLFEGILIPMFLLIGVWGSREEKVRASYYFFFYTFAGSVF 183 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML + + T+ L + K P + Q W+ F S A+KIP PFH WLP AHV Sbjct: 184 MLLGLFQIYSVTGTTDYQILLNI-KLPVTTQKWVLAGIFLSLAVKIPQIPFHIWLPQAHV 242 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +AP +GSV LAGI+LK+GGYG +RF P+ P AS+YFAP+I L ++AIIY L++ Q Sbjct: 243 EAPVSGSVILAGILLKLGGYGFLRFSWPILPAASEYFAPLIIMLGVVAIIYGGLLTCRQV 302 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D K+LIAYSS+AHMG V +G+F+ G+ A+F ML+HG VSSALF + +Y+R HTR Sbjct: 303 DFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFMMLAHGFVSSALFIAITYLYERHHTR 362 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I Y G+ MP + +MMV +++NMG+P + F+GEF +++ + + + VLA+ G+ Sbjct: 363 LIKYYRGVTLTMPVFVCIMMVLSLSNMGIPLSCNFVGEFFSLLAAVEYNFGLGVLATSGM 422 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 V SA YSL+LY ++ FG + + ++DL+ E + P+ Sbjct: 423 VWSAAYSLYLYNRISFGAAS-NYLLFIRDLNRCELLAISPL 462 >gi|313183967|ref|YP_004021821.1| NADH-plastoquinone oxidoreductase subunit 4 [Equisetum arvense] gi|281371687|gb|ADA63620.1| NADH-plastoquinone oxidoreductase subunit 4 [Equisetum arvense] Length = 498 Score = 306 bits (783), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 187/504 (37%), Positives = 286/504 (56%), Gaps = 23/504 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 +NLP+L+I+ P F+I F R LGI + F+F + ++ F Sbjct: 2 INLPWLTIIVLFPISAGFLIPFLPQ--SQNRIIRWYTLGICVVEFLFVTHIFYNSFQFHN 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q+ E Y+WI++ + LG+DGIS+ L++LT F+T +L++W I N R + Sbjct: 60 PTVQLEENYNWINFINLHWKLGIDGISMALILLTGFVTSLALLAAWP-ITTNTRLFNFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S IG F S D+LLF++ +E LIP+++++ +WGG R Y+A KF LYT GSIF+ Sbjct: 119 LAMYSGQIGLFTSQDLLLFFLMWELELIPVYLLLAMWGGKRRSYSATKFILYTAGGSIFL 178 Query: 179 LFAIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L + M + ++ +P S++ +++ F +FA+K+P+FPFHTWLP+ H Sbjct: 179 LLVSLAMGLYGSDNPSFAFSSLICKSYPVSLEIILYLGFLITFAVKLPIFPFHTWLPDTH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMGGYG IR + L P A FAP + + I I+YASL+S Q Sbjct: 239 GEAHYSTCMLLAGILLKMGGYGLIRINMELLPKAHTIFAPWLVIIGSIQIVYASLISFNQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSSI+HMG+V IGI S +G+ GA+ QM+SHGL+SSALFF G YDR T Sbjct: 299 QNLKRRIAYSSISHMGFVIIGIGSLTDTGLNGALLQMISHGLISSALFFLAGTSYDRTRT 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TV 409 I GGL +MP+ ++F+MA+ LPG SGF+ E LV + + N+N + Sbjct: 359 LMINQLGGLSMSMPKLFTFFILFSMASFALPGMSGFMAELLVFLGLIINNNYSLSFKIVI 418 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRE----RCMVYPIAVLTVF 464 L G++L+ +Y L + R++ +G E D RE C+ P+ V Sbjct: 419 TFLEGLGIILTPIYLLAMLRQMFYGYKIFEVPNWSFFDSGPREIFISICLFLPV----VG 474 Query: 465 FGIYPVPIRDTFSVPLSSIIENYT 488 G YP + ++ + SI+ Y+ Sbjct: 475 IGFYPNFVLSIWASGVESILSRYS 498 >gi|164420820|ref|YP_001648640.1| NADH dehydrogenase subunit 4 [Hydra oligactis] gi|158668160|gb|ABW76618.1| NADH dehydrogenase subunit 4 [Hydra oligactis] Length = 485 Score = 306 bits (783), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 166/367 (45%), Positives = 240/367 (65%), Gaps = 3/367 (0%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIF 140 +DG+SI + L+ L P CI+ S KSI+ +E+ I + ++IG F LD+L FYI Sbjct: 81 IDGLSIFFIGLSILLIPICIVISLKSIKYFIKEFNILLFLSVILLIGIFSILDILWFYIL 140 Query: 141 FEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA 199 FE LIP+F++IG+WG E+I AA+ FF YT GS+ ML +I + T++ +L Sbjct: 141 FEGVLIPIFIMIGIWGYREEKIKAAFYFFFYTLIGSLLMLISIFKIYSITGTTNYENLLI 200 Query: 200 MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 + K P++IQ W++I FF A+K+PM PFH WLP AHV+AP AGS+ LAGI+LK+GGYG Sbjct: 201 I-KIPYNIQLWLFIGFFIGLAVKVPMIPFHIWLPQAHVEAPIAGSILLAGILLKLGGYGL 259 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 IRF P+FPLASQ++ P+I +S+IAI+Y +L + Q DIK+LIAYSS++HMG VTIGIF Sbjct: 260 IRFCYPIFPLASQFYNPLIIIISIIAIVYGALTTCRQIDIKRLIAYSSVSHMGLVTIGIF 319 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 S G+ G++ M++HGL SS LF +IY R H+R I + GL MP +V+ + Sbjct: 320 SHSIEGITGSILMMIAHGLSSSGLFIISAIIYFRFHSRIIKYFRGLTITMPILSVITFIL 379 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 +AN+ P T FI E +I+S F+ + +L GV ++ +YSLW+Y ++ FG S Sbjct: 380 ILANISFPLTLNFIAELFLIISAFKFPLFIILLILMGVFINLIYSLWIYNRIXFG-SNSS 438 Query: 440 KVQQLKD 446 ++ +D Sbjct: 439 HLKFSRD 445 >gi|327179843|ref|YP_004327739.1| NADH dehydrogenase subunit 4 [Placozoan sp. 'Shirahama'] gi|298561262|dbj|BAJ09645.1| NADH dehydrogenase subunit 4 [Placozoan sp. 'Shirahama'] Length = 507 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 189/489 (38%), Positives = 284/489 (58%), Gaps = 27/489 (5%) Query: 6 LSIVTFLP-FLGVFVILFSSYLGCGRRSFFG----VALGISTINFIFSLFVWSVFDK--G 58 LS + FLP F+GVF +L + + R G +AL S I+ I + +W D+ G Sbjct: 5 LSTLLFLPPFMGVFHLLVAGTIRGSIRGSSGSLKRIALFWSFISLIGIIILWLSIDQEGG 64 Query: 59 RSSFQMIEYYHWIDYFCSYHL---------------GVDGISILLVVLTTFLTPFCILSS 103 + I++ + + H VDG+SI ++LT F+ P IL S Sbjct: 65 LTPLMKIDWIEGPERTPTKHFVGPILPIIMGGPLVFAVDGVSIYFLILTAFIVPCSILIS 124 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIY 162 W SI+ + ++I LVLE ++ F LD+ FYI FE LIPM++I+G+WG E++ Sbjct: 125 WNSIKYLVKSFLICMLVLEFLLYAVFSVLDIFWFYILFEGVLIPMYLILGIWGSREEKMQ 184 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFA 220 AAY FF YT GS+ ML + + T+ + L + S F P ++Q W+++ F + A Sbjct: 185 AAYYFFFYTLIGSVIMLLCLFSLYNIHGTTDYLTLVS-SNFIVPENMQKWLFLGIFLAMA 243 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +KIP+FPFH WLP AHV+AP AGSV LAGI+LK+GGYG +R P+ PL +Q AP I Sbjct: 244 VKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQNLAPAIIA 303 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 + +I I+Y S + Q D+K+L+AYSS+AHMG +I + + G+ G++F ML+HG+VS Sbjct: 304 MGIIGIVYGSFGTCRQIDVKRLVAYSSVAHMGLASITLVTHDIIGLTGSIFIMLAHGIVS 363 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S LF V ++YDR HTR I Y GL +MP +A +M++ ++AN+ P + GF+GE+L I+ Sbjct: 364 SLLFILVTILYDRHHTRLIKYYRGLSISMPIWATIMIMTSLANVAAPPSGGFVGEYLSIL 423 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 S F + V GV+LSA+YS + ++ FG + +D++ RE + + + Sbjct: 424 SSFNWNPIVGFFVCSGVILSAVYSFYFANRITFG-GPSNLITFARDVNRREFYITASMIL 482 Query: 461 LTVFFGIYP 469 L F GI P Sbjct: 483 LAFFIGICP 491 >gi|300771665|ref|ZP_07081540.1| NADH-quinone oxidoreductase subunit M [Sphingobacterium spiritivorum ATCC 33861] gi|300761654|gb|EFK58475.1| NADH-quinone oxidoreductase subunit M [Sphingobacterium spiritivorum ATCC 33861] Length = 481 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 162/412 (39%), Positives = 256/412 (62%), Gaps = 5/412 (1%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 +S Q + Y WI+ +H+G+DGIS+ LV+LT L P +LS++ + ++AF Sbjct: 53 ASVQFEQNYSWIESLGIHFHIGLDGISLPLVLLTNALMPLIVLSTFSKTYKGNLYALVAF 112 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 + ++ ++ F +LD FY+ +E +LIP++ I +WG +RI KFF+YTF GSIFM Sbjct: 113 M--QAGLVLVFTALDAFTFYVGWEIALIPIYFICALWGEGDRIRVNLKFFVYTFLGSIFM 170 Query: 179 LFAIVVMCWEKKTSSII-DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L AI+ + + +A S+Q W++ AFF +FAIKIP+FPFHTW PN + Sbjct: 171 LVAIIYLQQQTVNKDFEWSSFAALDLTGSVQRWIFWAFFLAFAIKIPLFPFHTWQPNTYT 230 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 APTAG++ LAGIMLKMG YG IR+L+P+ P + + L++I I+YAS++++ Q Sbjct: 231 NAPTAGTMLLAGIMLKMGIYGLIRWLIPIAPEGVAEYGHIAMILAVIGIVYASIIAIQQK 290 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 DIK+LIAYSSIAH+G ++ G+F+ G++GAM QM++HG+ LF+ + +I + TR Sbjct: 291 DIKRLIAYSSIAHVGLISAGVFAWNLQGLQGAMIQMINHGISVIGLFYVLDIIASKTGTR 350 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 + GGL MP A+ ++ M +GLP T+GF+GEFL++M V++ AV A + Sbjct: 351 SLADLGGLAKRMPNLAIFFLIIVMGAVGLPLTNGFVGEFLLLMGVYKYGFWYAVFAGLTL 410 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +L A+Y L LY+K + G K E+ + D++ E ++ + + ++ G+ P Sbjct: 411 ILGAVYMLRLYQKSMLGPLK-EQNSHVTDINGHEIVLLSIVVIAIIYIGVTP 461 >gi|172038435|ref|YP_001804936.1| NAD(P)H-quinone oxidoreductase subunit 4 [Cyanothece sp. ATCC 51142] gi|171699889|gb|ACB52870.1| NADH dehydrogenase subunit 4 [Cyanothece sp. ATCC 51142] Length = 533 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 177/498 (35%), Positives = 289/498 (58%), Gaps = 33/498 (6%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLF-VWSVFDKGR 59 +P+L+ + +P + F I L G R + ALG+ NF +++ V++ ++ Sbjct: 5 EIPWLTAIILVPLVAAFAIPLIPDKEGKTVRWY---ALGVGLFNFALTIYAVFNEYNFNN 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S+FQ+ E Y W+ ++ +G+DG+S+ L+VL+ +T +L+SW+ +++ R + Sbjct: 62 SNFQLEETYAWVPQLGLNWSVGIDGLSMPLIVLSGLITTLALLASWR-VEKKPRLFYFLM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LVL S +G F + D+LLF+ +E L+P++++I +WGG +R+YAA KF LYT SIF+ Sbjct: 121 LVLYSAQMGVFAAQDLLLFFFMWELELVPVYILISIWGGKKRLYAATKFILYTALASIFI 180 Query: 179 LFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L A + M + T + + M FP +++ + F +F +K+P+FP HTWLP+AH Sbjct: 181 LVAALGMAFYGDTVTFDMAQLGMKDFPLALEVLAYAGFLIAFGVKLPIFPLHTWLPDAHS 240 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A S+ LAG++LKMGGYG IRF + + P A FAP++ L ++ ++Y + + QT Sbjct: 241 EASAPVSMILAGVLLKMGGYGLIRFNIEMLPDAHIKFAPLLLILGVVNVVYGAFTAFGQT 300 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ +A SSI+HMG+V IGI S + G+ GA+ QM+SHGL+++ALFF G Y+R HT Sbjct: 301 NLKRRLASSSISHMGFVLIGISSFTELGMNGAVLQMVSHGLIAAALFFLCGSTYERTHTL 360 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVAV 411 + GGL MP+ + +MA++ LPG SGF+ E V + V + TV + Sbjct: 361 MMDEMGGLAKKMPKTFALFTAASMASLALPGMSGFVAELTVFLGVANSDVYSSTFKTVVI 420 Query: 412 -LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK------DLSLRE----RCMVYPIAV 460 L + G++L+ +Y L + R V +G EK + LK D RE C++ PI Sbjct: 421 FLTAVGLILTPIYLLSMLRVVFYG----EKNEGLKLDGFSLDAKPREVFITACLLLPI-- 474 Query: 461 LTVFFGIYPVPIRDTFSV 478 + G+YP T+ V Sbjct: 475 --IGIGLYPKLATTTYDV 490 >gi|164565468|ref|YP_001649185.1| NADH dehydrogenase subunit 4 [Seriatopora hystrix] gi|148669054|gb|ABR01612.1| NADH dehydrogenase subunit 4 [Seriatopora hystrix] Length = 481 Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 194/433 (44%), Positives = 276/433 (63%), Gaps = 10/433 (2%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLG-----VDGISILLVVLTTFLTPFCILS 102 +L W FD G S FQ W + F + G VDG+S++ ++LTTFL P CIL Sbjct: 41 TLVFWGGFD-GESHFQFFSLVEW-NIFSTLDWGPIVFAVDGVSLVFLLLTTFLIPICILI 98 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERI 161 S KSI+ F+E+++ LE ++IG F+ D+LLFY+FFE LIPMF +IG+WG E++ Sbjct: 99 SQKSIKFLFKEFLLCLFFLEVLLIGVFIVFDLLLFYLFFEGILIPMFFLIGIWGSREEKV 158 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAI 221 A++ FF +TF GS+F F I+ + T+ L + F +IQ W + F SFA+ Sbjct: 159 RASFYFFFFTFIGSLFFFFIILFLYQRIGTTDYFLLLNIKLF-LNIQKWALVGIFLSFAV 217 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ PFH WLP AHV+AP AGSV LAGI+LK+GGYG RF PLFP S Y++PVI F Sbjct: 218 KLPLIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGLFRFSWPLFPGGSLYWSPVIVFF 277 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 S++A++Y L++ Q D K+L+AYSS+AHMG V +G+F+ + G+ GA+F ML+HG VSS Sbjct: 278 SVVAVVYGGLMTCRQIDFKRLVAYSSVAHMGLVPLGLFTHVIEGLIGALFLMLAHGFVSS 337 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF V +YDR HTR I Y GL MP + + M++ ++ANMG P + F+GEF +++ Sbjct: 338 ALFIGVTFLYDRHHTRLIKYYRGLTLTMPLFVITMLILSLANMGFPLSCNFVGEFFSLLA 397 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 VFQ V + GV+ SA+YSL L+ ++ FG + +DLS RE +++P ++ Sbjct: 398 VFQYHYGVGMFVILGVLFSAIYSLSLFNRISFG-GGSNYLLFNRDLSRREISVIFPFLLI 456 Query: 462 TVFFGIYPVPIRD 474 + GI P PI D Sbjct: 457 ILGGGIVPFPIID 469 >gi|293395181|ref|ZP_06639467.1| NADH dehydrogenase I subunit M [Serratia odorifera DSM 4582] gi|291422358|gb|EFE95601.1| NADH dehydrogenase I subunit M [Serratia odorifera DSM 4582] Length = 509 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 172/425 (40%), Positives = 268/425 (63%), Gaps = 13/425 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F + HL +DG+S+L+VVLT L IL SW+ IQ+ + + L + VIG Sbjct: 71 WIPRFGITVHLALDGLSLLMVVLTGLLGLLAILCSWREIQKYQGFFHLNLLWILGGVIGV 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ Sbjct: 131 FLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLIAIL 190 Query: 184 VMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ + + + K P S I+Y + + FF +FA+K+P+ P H WLP+AH Q Sbjct: 191 GLVFVHYNATGVWTFNYEDLLKTPMSHNIEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQ 250 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L ++ I Y + ++ QTD Sbjct: 251 APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVVGIFYGAWMAFAQTD 310 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD Sbjct: 311 IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRD 370 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL + + + F +A +G+PGT F+GEF+++ FQ + V+++FG+V Sbjct: 371 MRQMGGLWGRIKFIPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLV 430 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +++YSL + ++ +G K + Q L ++ RE ++ + VL V G YP P+ DT + Sbjct: 431 FASVYSLIMMQRAYYGAPKSD--QPLPGMTARELFIILLLVVLLVLLGFYPQPVLDTSAA 488 Query: 479 PLSSI 483 +S++ Sbjct: 489 AMSNV 493 >gi|116329144|ref|YP_798864.1| NADH dehydrogenase (ubiquinone), M chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330248|ref|YP_799966.1| NADH dehydrogenase (ubiquinone), M chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121888|gb|ABJ79931.1| NADH dehydrogenase (ubiquinone), M chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123937|gb|ABJ75208.1| NADH dehydrogenase (ubiquinone), M chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 565 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 170/499 (34%), Positives = 295/499 (59%), Gaps = 13/499 (2%) Query: 1 MNLP--FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 M+ P LSI FLP +GV + S+ + R +A + + F+ + ++ +D Sbjct: 1 MDFPPYILSIFLFLPLIGVPFLFLSNQVYWLRF----IAGSFTLVPFLIIVGLYFQYDSS 56 Query: 59 RSSFQMIEYYHWI----DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 S+ Q ++ I + YH+G+DG S+LL +++ L L++W SI RE+ Sbjct: 57 NSALQFVDRIWGIVVSGNLKVDYHIGLDGFSLLLCGMSSLLFFLSTLATWSSITNRIREF 116 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 + +++E V G FLS +++LFYIF+EA + PM +++G+WG +R+ AA K+ +++F G Sbjct: 117 YVYLMIVEMSVHGVFLSGNLVLFYIFWEAMVSPMVLMVGIWGEDQRVKAAIKYLIFSFTG 176 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 S+ ML I+++ ++ T I +L + + P +I+ +++ AF +FAIK+P+FP HTW+ Sbjct: 177 SVLMLAGILILYFKTGTIVIEELSTGLLPEIPKNIRLFIFFAFVLAFAIKVPLFPLHTWM 236 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+ H QAPT GSV L+GI+LK+G YG +R +PLFP + ++ L + IIY +++ Sbjct: 237 PDVHSQAPTVGSVDLSGILLKIGLYGFVRLAIPLFPEEMLEYRELLGGLCIAGIIYGAVI 296 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 +M Q + K+++A+SS++HM + +GI S + G+ G M QML+HG + LFF +G++++ Sbjct: 297 AMAQENSKRVVAFSSLSHMSFCMLGILSFTEEGMAGGMLQMLNHGFTAGMLFFMLGMLHE 356 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+ DI GGL +P ++V + +++G+PGT+ FIGEFL+I+ + + L Sbjct: 357 RIGNNDIAKAGGLSKLLPVFSVFFAIAIFSSLGVPGTNSFIGEFLIILGSIKANVVYGAL 416 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A GVV +A Y L ++++FG ++ DLSL+E ++ P V+ + GIYP P Sbjct: 417 AVTGVVFAAGYLLLFAKRMIFGEPSKNLIEH-HDLSLKEWIILIPTVVMIFWIGIYPKPF 475 Query: 473 RDTFSVPLSSIIENYTLKT 491 + + + + KT Sbjct: 476 LKVLEPSVKVALNSASAKT 494 >gi|330958148|gb|EGH58408.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. maculicola str. ES4326] Length = 510 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 191/504 (37%), Positives = 299/504 (59%), Gaps = 26/504 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + G + +AL T+ + L++W+ + Sbjct: 1 MILPWLILI---PFIGGLLCWLGERFGPTLPRW--IALLTMTLELVLGLWLWATGNFGYA 55 Query: 57 --KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G +E++H WI F HL +DG+S+L+++LT L +L SWK IQ Sbjct: 56 PTPGADPTWTLEFHHPWITRFGIDVHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRKVG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + + + V+G FL++D+ +F+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLMWILGGVVGVFLAIDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAI 221 FF++T + ML AI+ V+ +T I YA +K +Y + + FF +FA+ Sbjct: 176 FFIFTQASGLIMLVAILGLVLVHFNQTGVITFAYADLLKTKLAPGTEYILMLGFFIAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H+WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L Sbjct: 236 KLPVVPLHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMGL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 L+ I Y + ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++G + QM++HGL ++ Sbjct: 296 GLVGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGVLIQMIAHGLSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL + + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILSGQLYERLHTRDMREMGGLWSRIAYIPAISLFFAAASLGLPGTGNFVGEFLILLG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F ++ + +A+ G+V ++YSL + + FG +K ++V LK + RE MV +AVL Sbjct: 416 SFASAPWITAIATSGLVFGSVYSLIMIHRAYFGPAKSDEV--LKGMDGREMIMVLGLAVL 473 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIE 485 V G++P P DT + + + + Sbjct: 474 LVVLGVFPQPFLDTSAATMHGVQQ 497 >gi|254995062|ref|ZP_05277252.1| NADH dehydrogenase chain M [Anaplasma marginale str. Mississippi] Length = 487 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 171/400 (42%), Positives = 260/400 (65%), Gaps = 11/400 (2%) Query: 81 VDGISILLVVLTTFL----TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 VD +S++L VL+TFL + FC+ S + + L+LES+VI F + D+L Sbjct: 68 VDALSMILTVLSTFLFLICSLFCVFSPGGA--PTVPSFFALLLLLESLVIVVFCTHDILW 125 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM-CWEKKTSSII 195 F+IFFEASL+PMF +IG WG +++ AA+KF +YT S+ L A+ + TS Sbjct: 126 FFIFFEASLVPMFFMIGFWGHGDKVGAAFKFLIYTATASVGFLAAVACIDAVANATSGSF 185 Query: 196 DLYAM---SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 D A+ + Q WI F +FA+K+P+ P HTWLP+AHVQAPTAGSV LAG+++ Sbjct: 186 DDVAIGLATSVHLRWQICFWILCFVAFAVKLPVVPCHTWLPSAHVQAPTAGSVLLAGLLI 245 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +RF + + P+ S +FA + LS I++IYASL + Q ++K LIAYSS+AHM Sbjct: 246 KLGGYGLLRFCIQMLPVVSAHFAKFVVCLSAISLIYASLTAFAQRNMKMLIAYSSVAHMS 305 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 +V G+FS ++G+ GA++QMLSHGL+S+ALF CVG++Y R T ++ GL MP+ Sbjct: 306 FVAAGMFSLNEAGILGAVYQMLSHGLISAALFLCVGMVYSRTGTMEMSECRGLASKMPKL 365 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + +++ F+MA+ G+PGTSGF+GEFL ++ VF++ + V + G+VLSA Y L L ++VV Sbjct: 366 SAMIVFFSMASAGIPGTSGFMGEFLSMLGVFKSFGPMVVCFAVGMVLSAAYMLRLCKEVV 425 Query: 433 FGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +G S + D++ E ++ +A+L + G++P P+ Sbjct: 426 WG-SAPAGSDKFGDINAGEFAILAILAILVLVLGVFPAPL 464 >gi|312890384|ref|ZP_07749921.1| NADH dehydrogenase subunit M [Mucilaginibacter paludis DSM 18603] gi|311297154|gb|EFQ74286.1| NADH dehydrogenase subunit M [Mucilaginibacter paludis DSM 18603] Length = 487 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 164/433 (37%), Positives = 267/433 (61%), Gaps = 3/433 (0%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 +S Q Y WI+ F + G+DGIS+++V+LTT L P IL+++K +N Sbjct: 50 ASTQFAVDYAWIESFGIHFKAGIDGISMVMVLLTTILVPLIILTTFKHEYKNQPVMYSLI 109 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L +++ ++ F +LD LFY+ +EA+L+P++ I +WGG++R+ KFF+YTF GS+FM Sbjct: 110 LFMQAGLLLVFTALDGFLFYVGWEAALLPIYFICALWGGADRVRITLKFFIYTFAGSLFM 169 Query: 179 LFAIVVMCWEKKTSS-IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L I+ + + + +D + S Q M+ AFF +FAIK+P+FPFHTW P+ + Sbjct: 170 LLGIIYLYLQTPGKTFALDAFYNLNLDASQQSVMFWAFFLAFAIKMPLFPFHTWQPDTYT 229 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +AP+AG++ L+GIMLKMG YG IR+L+P+ PL + + L++I I+YASL++ Q Sbjct: 230 EAPSAGTMMLSGIMLKMGIYGVIRWLIPISPLGFDRWVCTVIVLAVIGIVYASLIAFNQK 289 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D K+LIAYSSI H+G + GIF+ GV+GAM QML+HG+ LFF + +I RL+TR Sbjct: 290 DGKRLIAYSSIGHVGLIAAGIFAWNVQGVQGAMIQMLNHGINVVGLFFIMDIISRRLNTR 349 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 DI GG+ P++A+ ++ + + LP T+GFIGEFL++ +FQ + ++ +A + Sbjct: 350 DITQMGGIAKVAPQFAIAFLIIVLGTVALPLTNGFIGEFLLLNGIFQYNIWLSAVAGLTI 409 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 + A+Y L +Y+KV+ G + D++ E+ ++ I +L + G+YP I Sbjct: 410 IFGAVYMLRMYKKVMQGETNTLTA-TFTDITGSEKVVLGIICLLIIVIGVYPQVILHISE 468 Query: 478 VPLSSIIENYTLK 490 ++++I+ K Sbjct: 469 ASVTNLIDQVNQK 481 >gi|222475239|ref|YP_002563655.1| NADH dehydrogenase I chain M (nuoM) [Anaplasma marginale str. Florida] gi|255003223|ref|ZP_05278187.1| NADH dehydrogenase I chain M (nuoM) [Anaplasma marginale str. Puerto Rico] gi|255004351|ref|ZP_05279152.1| NADH dehydrogenase I chain M (nuoM) [Anaplasma marginale str. Virginia] gi|222419376|gb|ACM49399.1| NADH dehydrogenase I chain M (nuoM) [Anaplasma marginale str. Florida] Length = 487 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 170/400 (42%), Positives = 259/400 (64%), Gaps = 11/400 (2%) Query: 81 VDGISILLVVLTTFL----TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 VD +S++L VL+TFL + FC+ S + + L+LES+VI F + D+L Sbjct: 68 VDALSMILTVLSTFLFLICSLFCVFSPGGA--PTVPSFFALLLLLESLVIAVFCTHDILW 125 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM-CWEKKTSSII 195 F+I FEASL+PMF +IG WG +++ AA+KF +YT S+ L A+ + TS Sbjct: 126 FFILFEASLVPMFFMIGFWGHGDKVGAAFKFLIYTATASVGFLAAVACIDAVANATSGSF 185 Query: 196 DLYAM---SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 D A+ + Q WI F +FA+K+P+ P HTWLP+AHVQAPTAGSV LAG+++ Sbjct: 186 DDVAIGLATSVHLRWQICFWILCFVAFAVKLPVVPCHTWLPSAHVQAPTAGSVLLAGLLI 245 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +RF + + P+ S +FA + LS I++IYASL + Q ++K LIAYSS+AHM Sbjct: 246 KLGGYGLLRFCIQMLPVVSAHFAKFVVCLSAISLIYASLTAFAQRNMKMLIAYSSVAHMS 305 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 +V G+FS ++G+ GA++QMLSHGL+S+ALF CVG++Y R T ++ GL MP+ Sbjct: 306 FVAAGMFSLNEAGILGAVYQMLSHGLISAALFLCVGMVYSRTGTMEMSECRGLASKMPKL 365 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + +++ F+MA+ G+PGTSGF+GEFL ++ VF++ + V + G+VLSA Y L L ++VV Sbjct: 366 SAMIVFFSMASAGIPGTSGFMGEFLSMLGVFKSFGPMVVCFAVGMVLSAAYMLRLCKEVV 425 Query: 433 FGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +G S + D++ E ++ +A+L + G++P P+ Sbjct: 426 WG-SAPAGSDKFGDINAGEFAILAILAILVLVLGVFPAPL 464 >gi|48374259|gb|AAT41951.1| NADH dehydrogenase subunit 4 [Fremyella diplosiphon Fd33] Length = 564 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 177/460 (38%), Positives = 269/460 (58%), Gaps = 15/460 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRSSF 62 P+L+ + LP + +I R ++ ALG+ +F+ + W +D +SF Sbjct: 9 PWLTAIVLLPLVASLLIPVLPDKDGKRVRWY--ALGVGIADFVLMCYAFWKHYDTSSASF 66 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y W+ S+ + VDG+S LV+L F+T + S+W+ + + + LVL Sbjct: 67 QLVESYAWMPQLGLSWAVSVDGLSFPLVLLAGFVTTLSMFSAWR-VDRRPKLFYFLMLVL 125 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 + IG F++ D+LLF+I +E LIP+++++ +WGG +R YAA KF LYT SIF+L A Sbjct: 126 YAAQIGVFVAKDLLLFFIMWEVELIPVYLLVCIWGGQKRRYAATKFLLYTAAASIFILVA 185 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + M + D+ A M +P +++ ++ +F +K+ +FP HTWLP+AH +A Sbjct: 186 ALAMALYGGGTMTFDITALGMKDYPIALELLLYAGLLIAFGVKLAIFPMHTWLPDAHGEA 245 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 S+ LAG++LKMGGYG IR L L P A YFAPVI L ++ IIY +L S QT++ Sbjct: 246 SAPVSMILAGVLLKMGGYGLIRLNLELLPNAHVYFAPVIAVLGVVNIIYGALNSFAQTNM 305 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+ +AYSSI+HMG+V +GI S G+ GAM QM+SHGL++S LFF GV YDR HT + Sbjct: 306 KRRLAYSSISHMGFVLLGIASFTDLGINGAMLQMISHGLIASLLFFLAGVTYDRTHTMAM 365 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVAV-L 412 GG+ MP+ ++ V MA++ LPG SGF GE V + + + TV V L Sbjct: 366 NEMGGMGQAMPKVFALITVGAMASLALPGMSGFAGELSVFLGITTSDVYSSTFCTVTVFL 425 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 A+ GV+L+ +Y L + R+V +G K L D L+ + Sbjct: 426 AAVGVILTPIYLLSMLRQVFYGTGKALTC-DLSDAGLKNQ 464 >gi|5817781|gb|AAD52918.1|AF152244_5 NADH dehydrogenase subunit 4 [Acropora tenuis] Length = 475 Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 191/430 (44%), Positives = 272/430 (63%), Gaps = 10/430 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLG-----VDGISILLV 89 VAL S I L +W FD FQ+I WI ++ G +DG+S+ Sbjct: 20 VALEWSLAILISVLVLWGAFDL-EGQFQIINRIEWIVSPALNFQWGPGVFALDGVSLFFF 78 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 VLT L P CIL SWKSI+ F+E+++ L LE++++G FL LD+LLFY+ FE LIPMF Sbjct: 79 VLTALLIPICILISWKSIKHLFKEFLLCLLFLEALLVGVFLVLDLLLFYLLFEGILIPMF 138 Query: 150 VIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ 208 ++IGVWG E++ A+Y FF YTF GS+FML + + T+ L + K P + Q Sbjct: 139 LLIGVWGSREEKVRASYYFFFYTFAGSVFMLLGLFQIYSVTGTTDYQILLNI-KLPVTTQ 197 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 W+ F S A+KIP PFH WLP AHV+AP +GSV LAGI+LK+GGYG +RF P+ P Sbjct: 198 KWVLAGIFLSLAVKIPQIPFHIWLPQAHVEAPVSGSVILAGILLKLGGYGFLRFSWPILP 257 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 AS+YFAP+I L ++AIIY L++ Q D K+LIAYSS+AHMG V +G+F+ G+ Sbjct: 258 AASEYFAPLIIMLGVVAIIYGGLLTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVA 317 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 A+F ML+HG VSSALF + +Y+R HTR I Y G+ MP + +MMV +++NMG+P Sbjct: 318 AVFMMLAHGFVSSALFIAITYLYERHHTRLIKYYRGVTLTMPVFVCIMMVLSLSNMGIPL 377 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 + F+GEF +++ + + + VLA+ G+V SA YSL+LY ++ FG + + ++DL+ Sbjct: 378 SCNFVGEFFSLLAAVEYNFGLGVLATSGMVWSAAYSLYLYNRISFGAAS-NYLLFIRDLN 436 Query: 449 LRERCMVYPI 458 E + P+ Sbjct: 437 RCELLAISPL 446 >gi|28870540|ref|NP_793159.1| NADH dehydrogenase I subunit M [Pseudomonas syringae pv. tomato str. DC3000] gi|213970024|ref|ZP_03398156.1| NADH dehydrogenase I, M subunit [Pseudomonas syringae pv. tomato T1] gi|301381379|ref|ZP_07229797.1| NADH dehydrogenase subunit M [Pseudomonas syringae pv. tomato Max13] gi|302062150|ref|ZP_07253691.1| NADH dehydrogenase subunit M [Pseudomonas syringae pv. tomato K40] gi|302130460|ref|ZP_07256450.1| NADH dehydrogenase subunit M [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853788|gb|AAO56854.1| NADH dehydrogenase I, M subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213925128|gb|EEB58691.1| NADH dehydrogenase I, M subunit [Pseudomonas syringae pv. tomato T1] gi|330875762|gb|EGH09911.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331017282|gb|EGH97338.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 510 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 191/504 (37%), Positives = 298/504 (59%), Gaps = 26/504 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + G + +AL T+ L++W+ + Sbjct: 1 MILPWLILI---PFIGGLLCWLGERFGSTLPRW--IALLTMTLELALGLWLWATGNFGYA 55 Query: 57 --KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G +E++H WI F HL +DG+S+L+++LT L +L SWK IQ Sbjct: 56 PVPGADPTWALEFHHPWITRFGIDVHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRKVG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + + + V+G FL++D+ +F+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLMWILGGVVGVFLAIDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAI 221 FF++T + ML AI+ V+ +T I YA +K +Y + + FF +FA+ Sbjct: 176 FFIFTQASGLIMLVAILGLVLVHFNQTGVITFAYADLLKTKLAPGTEYILMLGFFIAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H+WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L Sbjct: 236 KLPVVPLHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMAL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 L+ I Y + ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++G + QM++HGL ++ Sbjct: 296 GLVGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGVLIQMIAHGLSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL + + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILSGQLYERLHTRDMREMGGLWSRIAYIPAISLFFAAASLGLPGTGNFVGEFLILLG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F ++ + +A+ G+V ++YSL + + FG +K ++V LK + RE MV +AVL Sbjct: 416 SFASAPWITAIATSGLVFGSVYSLIMIHRAYFGPAKSDEV--LKGMDGREMIMVLGLAVL 473 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIE 485 V G++P P DT + + + + Sbjct: 474 LVVLGVFPQPFLDTSAATMHGVQQ 497 >gi|84494918|ref|ZP_00994037.1| NADH dehydrogenase subunit M [Janibacter sp. HTCC2649] gi|84384411|gb|EAQ00291.1| NADH dehydrogenase subunit M [Janibacter sp. HTCC2649] Length = 513 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 171/486 (35%), Positives = 281/486 (57%), Gaps = 16/486 (3%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 LP L+++ +P +G VI L S R +ALG+S + + +L W FD G Sbjct: 3 GLPLLTLMMVVPLVGAAVIWLLPS---ASSRLAKPIALGVSLLTLLLALVAWGRFDTGSG 59 Query: 61 S-FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF-----RE 113 +Q+ E + WI F SY LGVDGI++ L+++ LTP C+L++W + ++ + Sbjct: 60 DHYQLTETHSWIPQFGVSYALGVDGIALSLIIMAAILTPICLLAAWNDLGDDADPAREKT 119 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L+L + ++G F + D+ LFY+FFEA LIP++ +IG++GG R YAA KF L++ Sbjct: 120 YFALMLILLTFMVGVFAARDVFLFYVFFEAMLIPVYFLIGLFGGPRRQYAAVKFILFSLV 179 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF----SIQYWMWIAFFCSFAIKIPMFPFH 229 G + ML A++ + ++ LY + + Q W++I FF +FAIK PM+P H Sbjct: 180 GGLIMLVAVIGLYFQGPGGEQGFLYEALEGAVGGSTATQRWLFIGFFIAFAIKAPMWPVH 239 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+A ++ A +V L G++ K+G +G +RF L FP A+++ P + L++I++IY Sbjct: 240 TWLPDAAAESRPATAVLLVGVLDKVGTFGMLRFCLGFFPEAAKWATPAVITLAVISVIYG 299 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 +L+++ DI +LIA++SI+H G++ +GIF+ + G+ M++HG ++ LF G Sbjct: 300 ALLAIGSRDIMRLIAFTSISHFGFIVLGIFAMTTTAGGGSALYMINHGFSTAGLFLLAGF 359 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + R ++ I YGG P A + ++++ LPG S ++ EFLV+ FQ Sbjct: 360 LISRHGSQRIADYGGWQRVTPVLAGTFFIAGLSSLALPGLSSYVSEFLVLTGTFQRYKVA 419 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVS-KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 A +A+ G+VL+ALY L Y++V G K + + +DL LRE+ +V PI + G Y Sbjct: 420 AAIATIGIVLAALYILLTYQRVFTGPRPKFVEGAEPRDLGLREKLVVAPIIASFLLLGFY 479 Query: 469 PVPIRD 474 P P+ D Sbjct: 480 PKPVLD 485 >gi|253698804|ref|YP_003019993.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter sp. M21] gi|251773654|gb|ACT16235.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacter sp. M21] Length = 495 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 169/433 (39%), Positives = 277/433 (63%), Gaps = 8/433 (1%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S F + E WI+ F Y LG+DGIS ++V+LT+F+T +L SW+ I+E Y Sbjct: 65 SGFFLFEDLPWIERFGIRYTLGMDGISQIMVLLTSFITVVAVLISWRQIKERSPVYYALL 124 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L L+ + G FLSLD+ LFY+FFEA LIP+ ++ G+WG +Y+A KFFLYTF GS+ M Sbjct: 125 LALQCSIQGVFLSLDLFLFYLFFEAMLIPIVLLSGIWGDGRPVYSAVKFFLYTFVGSLLM 184 Query: 179 LFAIV---VMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 L +I+ +M + S L A+ + P+ + W++ F +FA+KIP+FP H+W P Sbjct: 185 LVSIITLYLMHGAQTGSYTFALTALVQTSVPYGLALWLFAGFLVAFAVKIPLFPLHSWQP 244 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +A+ AP AG++ LA ++ K G YG IRF PLFP A++ F PV++ ++ I Y + ++ Sbjct: 245 DAYADAPIAGTLILASLLSKTGAYGLIRFAYPLFPEAARAFTPVLYLAAVFVISYGAWIA 304 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 Q D+K+L+AYSS++HMG++ +GI + + GA+ QM++H + + ALF VG++ +R Sbjct: 305 FAQKDMKRLVAYSSLSHMGFIALGIAAWSPLALSGALLQMVNHAVTTGALFVVVGMLDER 364 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 +RD+ AYGG+ +P + + F MA+ GLPG + F+GEFLV++ F+ + A+ A Sbjct: 365 AGSRDLAAYGGIWGKVPALSFFFLFFCMASAGLPGLNNFVGEFLVLLGAFKVAPAAALGA 424 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 G+VL+ +Y++ L ++V+F + K +LKDL++RE ++ +A++ V+ G++P P+ Sbjct: 425 FLGIVLTLIYTVRLVQEVLF--VRERKPLELKDLTMREAGVLALLALVAVYLGVHPNPVL 482 Query: 474 DTFSVPLSSIIEN 486 D F P++ ++ Sbjct: 483 DLFKEPIALLVSK 495 >gi|284040776|ref|YP_003390706.1| proton-translocating NADH-quinone oxidoreductase, chain M [Spirosoma linguale DSM 74] gi|283820069|gb|ADB41907.1| proton-translocating NADH-quinone oxidoreductase, chain M [Spirosoma linguale DSM 74] Length = 492 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 161/421 (38%), Positives = 263/421 (62%), Gaps = 10/421 (2%) Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 K +S Q Y WI G+DGIS+LLV+LT L PF +LS++ + + Sbjct: 48 KPDASSQFAFDYPWIGSLGIRLSAGIDGISVLLVLLTGLLVPFIVLSTFNRTYKQPTTFY 107 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L +++ ++G F + D LFY+FFEA+LIP++ + +WGG RI +KFF+YT FGS Sbjct: 108 ALMLFMQAALMGVFTARDGFLFYLFFEAALIPIYFLAAMWGGENRIPVTFKFFVYTIFGS 167 Query: 176 IFMLFAIVVMCWEK-------KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 +FML A+V + ++ +S+I D Y ++ P + W++ AFF +FAIK+P+FPF Sbjct: 168 LFMLIALVYLYYQTPPTAVAAHSSAIADFYKLNLTP-QAENWLFWAFFIAFAIKMPVFPF 226 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 HTW P+ +V++PT ++ LAGIMLKMG YG IRF+LP+ PL + + LS+I I+Y Sbjct: 227 HTWQPDTYVESPTPATMLLAGIMLKMGVYGLIRFILPIVPLGVETWGKTAIILSVIGIVY 286 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 +++++ Q D+K+LIAYSS +H+G + G+FS ++G++GA+ QML+HG+ +FF Sbjct: 287 GAIIAIRQRDMKRLIAYSSFSHVGLMAAGVFSQTETGMQGALIQMLAHGINVVGMFFVAD 346 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 VI+ R TR + GG+ + P+ V M+ + ++ LP T+GF+GEFL++ V+ ++ Sbjct: 347 VIFSRTSTRQLDQLGGITQSTPKLTVYFMIMLLGSVALPLTNGFVGEFLLLHGVYTFNHY 406 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 + + A F ++ A+Y L +++K +FG + + + DL+ E + P+ V+ + GIY Sbjct: 407 LGLAAGFTIIFGAVYMLRMFQKSMFGPT-TSRTESFTDLTTSESWVFIPLVVMVFWIGIY 465 Query: 469 P 469 P Sbjct: 466 P 466 >gi|104782532|ref|YP_609030.1| NADH dehydrogenase subunit M [Pseudomonas entomophila L48] gi|95111519|emb|CAK16239.1| NADH dehydrogenase I chain M, membrane subunit [Pseudomonas entomophila L48] Length = 510 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 182/435 (41%), Positives = 276/435 (63%), Gaps = 17/435 (3%) Query: 65 IEYY-HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +EY WI F S HL +DG+S+L+++LT L +L SWK IQ + + + + + Sbjct: 66 LEYKVEWIKRFGISIHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRHVGFFHLNLMWIL 125 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYKFFLYTFFGSI 176 V+G FL+LD+ LF+ F+E L+PM+ +I +WG S RIYAA KFF++T + Sbjct: 126 GGVVGVFLALDLFLFFFFWEMMLVPMYFLIALWGHSSTDGKKTRIYAATKFFIFTQASGL 185 Query: 177 FMLFAIV-VMCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 ML AI+ ++ T+ ++ DL ++ P ++Y + + FF +FA+K+P+ PFH+ Sbjct: 186 IMLVAILGLVLVNYNTTGVLTFNYSDLLK-AELPAGVEYVLMLGFFIAFAVKLPVVPFHS 244 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L LI I Y + Sbjct: 245 WLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTLGLIGIFYGA 304 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 ++ QTDIK+L+A+SS++HMG+V IGI+SG + ++GA+ QML+HGL ++ALF G + Sbjct: 305 FLAFAQTDIKRLVAFSSVSHMGFVLIGIYSGSQQALQGAVIQMLAHGLSAAALFILAGQL 364 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+RLHTRD+ GGL H + + + F A++GLPGT F+GEFL+++ F + + Sbjct: 365 YERLHTRDMREMGGLWHRIAYLPAISLFFAAASLGLPGTGNFVGEFLILIGSFAHVPWIT 424 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 V+A+ G+V ++YSL + + FG +K + V L + RE MV +A L + G+YP Sbjct: 425 VIATTGLVFGSVYSLIMIHRAYFGPAKADTV--LAGMDGRELIMVLGLAGLLILLGVYPQ 482 Query: 471 PIRDTFSVPLSSIIE 485 P DT + +S + + Sbjct: 483 PFLDTSAATMSGVQQ 497 >gi|86739263|ref|YP_479663.1| NADH dehydrogenase subunit M [Frankia sp. CcI3] gi|86566125|gb|ABD09934.1| NADH dehydrogenase subunit M [Frankia sp. CcI3] Length = 562 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 176/477 (36%), Positives = 276/477 (57%), Gaps = 57/477 (11%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--- 110 ++ ++ FQ + Y WI F SY +G DGIS++L++L L P +L+SW + Sbjct: 54 YNPDKAGFQFAQSYDWIKTFGISYSVGADGISLVLILLAALLVPVVVLASWDEAGADGGT 113 Query: 111 ----------------------------------------FREYMIAF----LVLESMVI 126 R + AF L LE+ +I Sbjct: 114 TGATDPTGAAAVGAAAVGVDGAGVDGAGVDGAGVDGAGTRSRRSVPAFFALLLALEAGMI 173 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWG----GSERIYAAYKFFLYTFFGSIFMLFAI 182 G F + D+ LFY+FFEA LIPM+ +IG +G ++R YAA KF LY+ FG + ML A+ Sbjct: 174 GVFAATDVFLFYVFFEAMLIPMYFLIGSYGPVREQAQRSYAAVKFLLYSLFGGLLMLAAV 233 Query: 183 V---VMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + V+ + S D + + + +Q +++ FF +FAIK P+FPFHTWLP+A Sbjct: 234 IGLYVVSADNLGSGTFDFATLRQMDITPGVQKLLFLGFFLAFAIKAPLFPFHTWLPDAGA 293 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 Q+PT G+V L G++ K+G +G IR+ +PLFP A+ YFAP++ L++I I Y +L+++ Q Sbjct: 294 QSPTGGAVLLVGVLDKVGTFGLIRYCIPLFPDAADYFAPLVLGLAVIGIFYGALLAIGQR 353 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K+L+AY+S+AH G++ +G F+ GA+ M++HGL + LF VG + R TR Sbjct: 354 DMKRLVAYTSLAHFGFIALGTFAFTSQAGSGAVLYMVNHGLSTGLLFMVVGFLVARRGTR 413 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 D+ AYGGL P A V +V ++++ LPGT+ F+ EFLV++ F + +A++A+ G+ Sbjct: 414 DVGAYGGLARVTPVLAGVFLVAGLSSLALPGTNSFVSEFLVLVGTFTRNRPLAIVATTGI 473 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 VL+A+Y L+LY++ + G E+ + L DLSLRE+ +V P+ L V G+YP P+ D Sbjct: 474 VLAAIYILYLYQRTMTGPVVHEENKVLVDLSLREKLVVAPMVALIVALGVYPKPLLD 530 >gi|72163082|ref|YP_290739.1| NADH dehydrogenase subunit M [Thermobifida fusca YX] gi|71916814|gb|AAZ56716.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermobifida fusca YX] Length = 521 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 180/512 (35%), Positives = 290/512 (56%), Gaps = 26/512 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 M +P+L++ LP LG ++ + +R L + I +L FD Sbjct: 1 MTIPWLTLAIALPALGSLIVALIPRERVELAKRVTLACTLVVLAIVGAMALN----FDPS 56 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREY 114 Q E + WI F Y +GVDGI++ L+VL+ L P +L++WK +E + Y Sbjct: 57 GDRLQFTEVHPWIARFGVHYAVGVDGIALTLIVLSALLVPLVVLAAWKEQEEAADRGKGY 116 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFF 173 L+LE+M+IG F ++D+ LFY+ FEA LIP++ +IG +G G +R YAA KF LY+ Sbjct: 117 FALILLLEAMMIGVFAAIDVFLFYVLFEAMLIPVYFMIGRYGRGEDRRYAAMKFLLYSLA 176 Query: 174 GSIFMLFAIV-VMCWEKKTSSIIDLYAMSKFPFSI--------QYWMWIAFFCSFAIKIP 224 G + ML +++ V + + + L++ P + W+++ FF +FAIK P Sbjct: 177 GGLLMLVSVIGVYAYSAQAGNGTFLWSELAGPEGLLAGVDTGAARWLFLGFFVAFAIKAP 236 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 M+P HTWLP A A +V L G++ K+G YG +R+ L LFP A+++F + LSL+ Sbjct: 237 MWPVHTWLPTAAGSARPGTAVLLVGVLDKVGTYGMLRYCLELFPGAAKWFVWPVVVLSLV 296 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +IIY ++V++ Q+D+ +LIAY+S++H G++T+GIF+ G GA M++HG + ALF Sbjct: 297 SIIYGAIVAIGQSDMLRLIAYTSVSHFGFITLGIFAMTSQGQSGAALYMVNHGFSTGALF 356 Query: 345 FCVGVIYDRLH-TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 G + R + + I YGGL P A +V ++++ LPG S F+ EFLV + F Sbjct: 357 LLAGFLIARNNGSAQIADYGGLQKAAPVLAGTFLVVGLSSLALPGLSPFVSEFLVFVGTF 416 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 A++A+ GVVL+ALY LWLY++ + G + EK+ +KDLS RE V P+ + + Sbjct: 417 TVLPVPAIIATIGVVLAALYILWLYQRTMTGPLR-EKLAGVKDLSGRELWAVAPLVAVII 475 Query: 464 FFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 FG++P P+ + ++ +E+ + SD Sbjct: 476 LFGVFPQPLLNV----INPAVEHTMQQVDVSD 503 >gi|240266490|ref|YP_002970844.1| NADH dehydrogenase subunit 4 [Arthroderma uncinatum] gi|237781106|gb|ACR19598.1| NADH dehydrogenase subunit 4 [Arthroderma uncinatum] Length = 488 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 182/440 (41%), Positives = 275/440 (62%), Gaps = 17/440 (3%) Query: 55 FDKGRSSFQMI--EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENF 111 FD FQ I E + I YF Y LG+DGISI ++LTT + P ++S+W SI+ +N Sbjct: 52 FDFSSKQFQFIQLEEIYKISYFDLY-LGIDGISIYFLLLTTIIMPISLVSNWNSIESKNV 110 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 ++I L+LE++++ FL LD+LLFYIFFE+ L P+F++IG++G S+++ A++ FLYT Sbjct: 111 LSFVIIILLLETLLLAVFLVLDILLFYIFFESILPPLFILIGLFGSSDKVRASFYLFLYT 170 Query: 172 FFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMF 226 GS+FML +I+ M SSI+ D A+SK +S Q +++ F SFA+K P Sbjct: 171 LLGSLFMLLSIITM------SSIMGATDFDALSKANYSYVTQIFLFYGIFLSFAVKTPTI 224 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 +TWL AHV++P AGS+ LAGI+LK+ YG R +LPL P A+ + +++ + +I I Sbjct: 225 FLNTWLLKAHVESPLAGSIILAGIVLKLSLYGIFRLILPLLPKATIDYTYIVYVIGVITI 284 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 +YAS ++ DIK+LIAYSS++H + FS G+EGA+ L+HG VSS LF C Sbjct: 285 LYASFSTLRTIDIKELIAYSSVSHAAVYLLSAFSNTIQGIEGAITLGLAHGFVSSGLFIC 344 Query: 347 V-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 V GV+YDR TR I Y G+ MP + ++ + ++ N G P T FIGEF+ + +F+ Sbjct: 345 VGGVLYDRSSTRLITYYRGMAQLMPIFCILFYILSLGNCGSPLTLNFIGEFMSLYGIFER 404 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK-VQQLKDLSLRERCMVYPIAVLTVF 464 + + VLAS +V SA Y+++++ ++ FG +KDLS RE ++ + V TV Sbjct: 405 ISILGVLASSSIVFSAAYTIFMFNRIAFGGKYSSYFFNYVKDLSKREFILLLTLVVFTVL 464 Query: 465 FGIYPVPIRDTFSVPLSSII 484 FGIYP PI D + +S++I Sbjct: 465 FGIYPSPILDGLNYSVSTLI 484 >gi|91176237|ref|YP_537108.1| NADH dehydrogenase subunit 4 [Paracoccidioides brasiliensis] gi|63081166|gb|AAY30329.1| NADH dehydrogenase subunit 4 [Paracoccidioides brasiliensis] Length = 491 Score = 303 bits (777), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 177/437 (40%), Positives = 268/437 (61%), Gaps = 7/437 (1%) Query: 55 FDKGRSSFQMI--EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 FD FQ I E + I+YF ++LG+DGISI V+LTT L P I+S+WKSI N Sbjct: 56 FDFSSKQFQFIPLEESYQINYF-EFYLGLDGISIYFVLLTTILIPIAIISNWKSIDNNNI 114 Query: 113 EYMIAFLVLESMVIGA-FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 I L+L ++ A FL LD+LLFYIFFE+ L P+F++IG++G ++ A++ FLYT Sbjct: 115 LSFIIILLLLETLLLAVFLVLDILLFYIFFESILPPLFLLIGLFGSKNKVRASFYLFLYT 174 Query: 172 FFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 GS+FML +I+ + + ++ + D + + F + Q +++ F SFA+K P +TW Sbjct: 175 LLGSLFMLLSIITISYITGSTDL-DHLSKTNFDYLTQLFLFYGIFISFAVKTPTIFLNTW 233 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 L AHV++P AGS+ LAG++LK+ YG R +LPL P AS + +I+ L +I I+YAS Sbjct: 234 LLKAHVESPLAGSILLAGVVLKLSLYGIFRLILPLIPKASINYTYLIYLLGVITILYASF 293 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVI 350 ++ DIK+LIAYSS++H +G FS G+EGA+ L+HG VSS LF CV G++ Sbjct: 294 STLRTIDIKELIAYSSVSHAAVYLLGAFSNTLQGIEGAISLGLAHGFVSSGLFICVGGIL 353 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R +R I Y GL MP ++++ + ++AN G P + FIGEFL ++ F+ + Sbjct: 354 YERSSSRLISYYRGLAQIMPLFSILFYILSLANCGAPLSLNFIGEFLSLLGTFERLPLLG 413 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 +LAS V+ SA Y+++++ ++ FG + Q L DLS RE ++ + T+ GIYP Sbjct: 414 LLASSSVIFSAAYTIFMFNRIAFGGTFSPYFSQYLWDLSKREFALLSSLVAFTLLLGIYP 473 Query: 470 VPIRDTFSVPLSSIIEN 486 PI D +S +I N Sbjct: 474 QPILDGLHYSVSLLIYN 490 >gi|148358099|ref|YP_001249339.1| NADH:ubiquinone oxidoreductase subunit 4 [Gibberella zeae] gi|86142498|gb|ABC86613.1| NADH:ubiquinone oxidoreductase subunit 4 [Gibberella zeae] Length = 484 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 178/481 (37%), Positives = 292/481 (60%), Gaps = 4/481 (0%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + P LG V+ S +AL S IN I SL ++ +F+ + FQ + Sbjct: 3 LSSLIITPLLGTMVVASSGSYKNSELFTKTIALTTSVINLIISLVMFILFNNSTNQFQFV 62 Query: 66 EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 + ++ + F Y LGVDGISI ++LTT + P +LS+W SI+EN + Y+I L+LE+++ Sbjct: 63 QEHYNVQLFDIY-LGVDGISIYFILLTTIIMPIALLSNWDSIKENVKSYLIIMLLLETLL 121 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM 185 + F+SLD++ FYIFFE+ L P+F++IG++G ++ A+Y FLYT +GS+F+L +I+ Sbjct: 122 LAVFMSLDIMSFYIFFESILPPLFILIGLYGSDNKVSASYYLFLYTLWGSLFLLLSILST 181 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 ++ L+ ++ F + Q +++I F SFA+K P + WL AHV++P GS+ Sbjct: 182 SSIMGSTDFDTLFKLN-FEYKTQIFLFIGIFISFAVKTPTIFLNNWLLKAHVESPLGGSI 240 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA I+LK+ YG R +LP+ P AS + V+F +++I IIYAS ++ TD+K+LIAY Sbjct: 241 VLAAIVLKLSLYGVFRLILPILPKASLDYTFVVFTIAVITIIYASFSTLRTTDVKELIAY 300 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGG 364 SS+ H IG+FS G+EG++ L+HG VSS LF C G++YDR TR I+ Y G Sbjct: 301 SSVCHASVYLIGVFSNTMQGLEGSVILGLAHGFVSSGLFICAGGILYDRTGTRLIYFYRG 360 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + MP +A++ + + N G P T F+GEF+ + S+ + + V A VV SA Y+ Sbjct: 361 ITQLMPIFAILFFILALGNCGAPLTLNFVGEFMSLYSIIERLPVLGVFACSSVVFSAAYT 420 Query: 425 LWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 ++++ ++ FG S +++ + D++ RE +++ + + TV G+YP I + ++S+ Sbjct: 421 IYMFNRISFGGSFTRFIEESIYDVNKREFILLFILVLFTVVLGVYPSLILNVLDYSMNSL 480 Query: 484 I 484 I Sbjct: 481 I 481 >gi|2920663|gb|AAC04581.1| NADH dehydrogenase I chain M [Pseudomonas syringae] Length = 444 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 179/433 (41%), Positives = 271/433 (62%), Gaps = 15/433 (3%) Query: 66 EYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 E++H WI F HL +DG+S+L+++LT L +L SWK IQ + + + + Sbjct: 1 EFHHPWITRFGIDVHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRKVGFFHLNLMWILG 60 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYKFFLYTFFGSIF 177 V+G FL++D+ +F+ F+E L+PM+ +I +WG S RIYAA KFF++T + Sbjct: 61 GVVGVFLAIDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATKFFIFTQASGLI 120 Query: 178 MLFAIV--VMCWEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 ML AI+ V+ +T I YA +K +Y + + FF +FA+K+P+ P H+WL Sbjct: 121 MLVAILGLVLVHFNQTGVITFAYADLLKTKLAPGTEYILMLGFFIAFAVKLPVVPLHSWL 180 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L L+ I Y + + Sbjct: 181 PDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTLGLVGIFYGAFL 240 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + QTDIK+LIA+SS++HMG+V IGI+SG + ++G + QM++HGL ++ALF G +Y+ Sbjct: 241 AFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGVLIQMIAHGLSAAALFILSGQLYE 300 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 RLHTRD+ GGL + + + F A++GLPGT F+GEFL+++ F +S + + Sbjct: 301 RLHTRDMREMGGLWSRIAYIPAISLFFAAASLGLPGTGNFVGEFLILLGSFASSPWITAI 360 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ G+V ++YSL + + FG SK ++V LK + RE MV +AVL V G++P P Sbjct: 361 ATSGLVFGSVYSLIMIHRAYFGPSKSDEV--LKGMDGREMIMVLGLAVLLVVLGVFPQPF 418 Query: 473 RDTFSVPLSSIIE 485 DT + + + + Sbjct: 419 LDTSAATMHGVQQ 431 >gi|150017828|ref|YP_001310082.1| proton-translocating NADH-quinone oxidoreductase, chain M [Clostridium beijerinckii NCIMB 8052] gi|149904293|gb|ABR35126.1| proton-translocating NADH-quinone oxidoreductase, chain M [Clostridium beijerinckii NCIMB 8052] Length = 507 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 165/449 (36%), Positives = 268/449 (59%), Gaps = 16/449 (3%) Query: 40 ISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPF 98 ++ I+ + S+ + ++K Q E Y WI F +Y +G DG+SI LV+LT + Sbjct: 38 VTFISLLLSIIAFVTYNKEMGGLQFQETYSWIPAFGINYSVGADGLSIPLVLLTAIVIFA 97 Query: 99 CILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS 158 + +SWK +++ +E+ I L+L + V G F+S D+ LFY+FFE ++IPM+++IGVWG + Sbjct: 98 GVFASWK-MEKRIKEFFIFLLLLVAGVFGVFISRDLFLFYVFFEIAVIPMYILIGVWGST 156 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI--IDLYAMSKFPFSIQYWMWIAFF 216 + YAA K LY GS F+L I+ I D+ +S +S + + F Sbjct: 157 RKDYAAMKLTLYLLVGSAFILIGIIATFVYANNLGIRSFDIQTLSTIEYSASFQKFTFFL 216 Query: 217 --CSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 F I +PM+PFHTW P+ HV APTA S+ AG+++K+GGYG IR + LFP ++Y+ Sbjct: 217 MLIGFGILVPMWPFHTWSPDGHVAAPTAVSMLHAGVLMKLGGYGIIRAGVFLFPEGAKYW 276 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P+I LS+ ++Y ++V+M Q D+K +I YSS++HMGYV +GI S G++GA+ QM Sbjct: 277 VPLIAVLSIANVVYGAMVAMAQKDLKFVIGYSSVSHMGYVLLGIASLNFEGIDGAVAQMF 336 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HG++++ F +G IY + HTR+I +GGL+H MPR A+ ++ A++GLPG + F+ Sbjct: 337 AHGIMTALFFTLIGNIYHQAHTREIAKFGGLIHQMPRVAIGFIIAGFASLGLPGLNNFVA 396 Query: 395 EFLVIMSVFQNSNT---------VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 EFL+ + T ++++A G+V++A Y L + + G K E+ L+ Sbjct: 397 EFLIFLGSHDEPRTLFSVIPFKAISIMAILGIVITAAYILKVIQSTFLGPRK-EEWNHLE 455 Query: 446 DLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 D E + +A + +FFG++P P+ D Sbjct: 456 DAKGVEMIPIVMLAGVLIFFGLFPSPLID 484 >gi|186681045|ref|YP_001864241.1| NAD(P)H-quinone oxidoreductase subunit 4 [Nostoc punctiforme PCC 73102] gi|186463497|gb|ACC79298.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nostoc punctiforme PCC 73102] Length = 537 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 178/499 (35%), Positives = 286/499 (57%), Gaps = 33/499 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKG 58 + P+L+ + LP + I L G R + LG++ +F ++ W +D Sbjct: 4 IEFPWLTAIILLPLVAALAIPLIPDKEGRTVRWY---GLGVAIADFALMIYAFWYKYDFQ 60 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 S Q +E Y WI + +GVDG+S+ L++LT + I ++WK + R + Sbjct: 61 SSRLQFVENYPWIPQLGLHWAVGVDGLSMPLLLLTGLINTLAIFAAWK-VTTKPRLFYGL 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L + S +G F++ D+LLF++ +E L+P++++I +WGG R YAA KF LYT SIF Sbjct: 120 MLAMYSAQLGVFVAQDLLLFFLMWEIELVPVYLLISIWGGQNRRYAATKFILYTAAASIF 179 Query: 178 MLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 +L A M + T + + M ++P +++ ++ F +F +K+P+FP HTWLP+AH Sbjct: 180 ILIAGFAMAFSGDTVTFDMATLGMKEYPKTLELLVYAGFLIAFGVKLPIFPLHTWLPDAH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A GS+ LAG++LKMGGY IRF + + P A FAPV+ L ++ I+Y + + Q Sbjct: 240 GEASAPGSMILAGVLLKMGGYALIRFNVEMLPNAHVTFAPVLAILGVVNIVYGACCAFAQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 T++K+ +AYSSIAHMG+V IGI S + G+ GA+ QM+SHGL++++LFF GV YDR HT Sbjct: 300 TNLKRRLAYSSIAHMGFVLIGIASYTELGISGAVLQMVSHGLIAASLFFLSGVTYDRTHT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM-----SVFQNSNTVAV 411 + GG+ MP+ + + +MA++ LPG SGF+GE +V + V+ +S + V Sbjct: 360 LMMDKMGGMAKVMPKTFALFTIGSMASLALPGMSGFVGELMVFLGIATSDVYSSSFKIVV 419 Query: 412 --LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL------KDLSLRE----RCMVYPIA 459 L++ GV+L+ +Y L + R+V +G E+ Q+L D+ RE C++ PI Sbjct: 420 VLLSAVGVILTPIYLLSMLRQVFYG----EQSQELHLDAVISDVKPREIFITACLLLPI- 474 Query: 460 VLTVFFGIYPVPIRDTFSV 478 + G YP T+ V Sbjct: 475 ---IGIGFYPKLATQTYDV 490 >gi|11466428|ref|NP_038432.1| NADH dehydrogenase subunit 4 [Mesostigma viride] gi|14548164|sp|Q9MUM8|NU4C_MESVI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|7259571|gb|AAF43872.1|AF166114_84 subunit 4 of NADH-plastoquinoneoxidoreductase [Mesostigma viride] Length = 507 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 183/499 (36%), Positives = 293/499 (58%), Gaps = 19/499 (3%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWS-VFDKGR 59 N P+++ + LP L G+ + G R + ALGI ++F+ +++ ++ Sbjct: 3 NFPWITSIVMLPILAGLLIPFIPDENGKNVRWY---ALGIGLLDFLLISYIFGYKYNIQD 59 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 +S Q+I+ Y WI + LG+DG+SI L++LT F+T +L +W IQ+N + + Sbjct: 60 TSLQLIDDYEWISSINFHWRLGIDGLSIPLILLTGFITTLAMLGAWP-IQKNAKLFYFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S +G F S D+LLF++ +E LIP+++++ +WGG +R+YAA KF LYT GSIF+ Sbjct: 119 LAMYSGQLGVFASQDLLLFFLMWELELIPIYILLIIWGGKKRLYAATKFILYTALGSIFI 178 Query: 179 LFAIVVMC-WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L A M + + S + + ++P +++ +I F ++A+K+P FP HTWLP+ H Sbjct: 179 LIAAFGMAFYGENMSFDMQILGEKEYPINLEILFYICFLIAYAVKLPAFPVHTWLPDTHG 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMGGY IR + + P A YFAP + + +I IIYA+L S Q Sbjct: 239 EAHYSTCMLLAGILLKMGGYALIRINMNMLPNAHIYFAPYLAIIGVINIIYAALTSFAQR 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 +IK+ IAYSSI+HMG+V IGI S G+ GAM QM+SHGL+ ++LFF G YDR T Sbjct: 299 NIKRKIAYSSISHMGFVLIGISSFTDIGLSGAMLQMVSHGLIGASLFFLAGTTYDRTRTL 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV------ 411 + GG+ MP+ + ++A++ LPG SGF+ E +V + F NSN ++ Sbjct: 359 ILEDMGGIAKYMPKIFAMFTTCSLASLALPGMSGFVAELMVFLG-FANSNAYSIEFRGII 417 Query: 412 --LASFGVVLSALYSLWLYRKVVFGVS--KCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 L + G++++ +Y L + R+V +G K KV L D S RE ++ + V + GI Sbjct: 418 TFLEAIGIIVTPIYLLSMLRQVFYGSENLKLLKVNNLIDASAREIFIISCLLVPVIGIGI 477 Query: 468 YPVPIRDTFSVPLSSIIEN 486 YP + + + ++IIE+ Sbjct: 478 YPRILTQIYDLKTNAIIEH 496 >gi|209526560|ref|ZP_03275086.1| proton-translocating NADH-quinone oxidoreductase, chain M [Arthrospira maxima CS-328] gi|209493066|gb|EDZ93395.1| proton-translocating NADH-quinone oxidoreductase, chain M [Arthrospira maxima CS-328] Length = 541 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 177/493 (35%), Positives = 285/493 (57%), Gaps = 23/493 (4%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 +P+L+ + P L F I L G R + + + I F S ++ S Sbjct: 4 QIPWLTAIILFPLLASFAIPLIPDREGKTIRWYALGVGLLDLVLTIVCFF--SNYNLNDS 61 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 +FQ+ E Y WI ++ + VDG+S+ L+VLT F+ IL+SW+ + R + L Sbjct: 62 TFQLAETYSWIPQLGMNWSVAVDGLSMPLIVLTGFVNTLAILASWR-VTNKPRLFYFLLL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VL S +G F + D+LLF++ +E L+P++++I +WGG++R+YAA KF LYT GSIF+L Sbjct: 121 VLYSAQMGVFAAQDLLLFFLMWELELVPVYILISIWGGAKRLYAATKFILYTALGSIFIL 180 Query: 180 FAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A + M + S I A +P +++ +++ F +FA+K+P+FP HTWLP+AH + Sbjct: 181 AAALAMAFYGSNPSFDISTLAHKNYPLALELFLYAGFLIAFAVKLPIFPLHTWLPDAHSE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A S+ LAG++LKMGGYG IR + + P A YFAP++ L ++ I+Y +L + Q + Sbjct: 241 ASAPVSMILAGVLLKMGGYGLIRMNMEMLPNAHLYFAPILAILGVVNIVYGALSAFAQDN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ +A SSI+HMG+V +GI S + G+ GA+ QM+SHGL+++ LFF GV Y+R HT Sbjct: 301 LKRRLACSSISHMGFVLLGIASLTELGLNGAVLQMISHGLIAAMLFFLAGVTYERTHTLS 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM-----SVFQNSNTVAV-- 411 + GG+ +MP+ + +MA++ LPG SGF+GE + + ++ +S + V Sbjct: 361 MAKLGGMAKDMPKVFALFTAGSMASLALPGMSGFVGELTIFLGITTSDIYSSSFKIVVIG 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE----RCMVYPIAVLTVFF 465 LA+ G++L+ +Y L L R V +G + + L D RE C++ PI + Sbjct: 421 LAAVGLILTPIYLLNLLRVVFYGENSGGFNIDKYLGDAQPREVMIATCLLLPI----IGI 476 Query: 466 GIYPVPIRDTFSV 478 G+YP T+ V Sbjct: 477 GLYPKVATQTYDV 489 >gi|298674255|ref|YP_003726005.1| proton-translocating NADH-quinone oxidoreductase subunit M [Methanohalobium evestigatum Z-7303] gi|298287243|gb|ADI73209.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methanohalobium evestigatum Z-7303] Length = 495 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 171/484 (35%), Positives = 279/484 (57%), Gaps = 20/484 (4%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LP LS++ +P + + F+ R + AL S I+ + +L+++ FD +S Sbjct: 2 LPVLSMLILIPLIFAVITFFTKTKEQARTT----ALTGSVISLVLALYMYMNFDSSIASL 57 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q +E W+ +Y +GVDG+S+ L++L + PF I+ SW + + L + Sbjct: 58 QFVEISKWVPSLGITYSVGVDGVSMPLILLNAIVIPFLIIYSWNEEKSYPNRFFGLILAM 117 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML-- 179 + VIG F +LD LFY+F+E +LIP++ ++ WGG + +AA KFF+YT S+ ML Sbjct: 118 QGAVIGVFAALDFFLFYVFWELTLIPLYFMVSQWGGPNKEFAAIKFFIYTHVASLVMLLG 177 Query: 180 -FAIVVMCWEKKTSSIIDLYAM-SKF-----PFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 FA+ W + S ++ + ++F P ++ ++IA F +KIP FPFH+WL Sbjct: 178 IFALYFTAWSQTGSPTFNIQELLTQFQSFEAPL-VKDAIFIALLFGFIVKIPTFPFHSWL 236 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS--QYFAPVIFFLSLIAIIYAS 290 P+A+ ++P AG+V I+LK+GGYG R +LP+ P ++ L +IIY + Sbjct: 237 PDAYTESPIAGNVLF--ILLKIGGYGLFRIMLPILPFTGTPNLMISIMALLGTASIIYGA 294 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 V++ Q D K++IA++S++HMG+V +G + V GAMFQ SHGL+ S +F VGVI Sbjct: 295 FVALAQRDFKRMIAFASVSHMGFVVLGSAGLVSLSVSGAMFQQFSHGLILSVMFMSVGVI 354 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 TR I GGL MP+ A++M+V MA++GLPG +GF+ EFLV+ S + N Sbjct: 355 QTNAGTRIINQLGGLSKKMPKLALIMVVVFMASLGLPGLTGFVAEFLVLTSSYVNLPGYV 414 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 + G+V++A Y LW ++ +FG+ EK+ +KDL+ + + I++L ++FG+ P Sbjct: 415 LAVMIGIVITAAYHLWAMQRSMFGLYN-EKLGDVKDLTNYQSLSMAVISLLVIYFGLNPN 473 Query: 471 PIRD 474 P+ D Sbjct: 474 PVLD 477 >gi|21228583|ref|NP_634505.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] gi|7649022|gb|AAF65740.1|AF228525_10 F420H2 dehydrogenase subunit FpoM [Methanosarcina mazei Go1] gi|20907077|gb|AAM32177.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] Length = 495 Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 179/485 (36%), Positives = 282/485 (58%), Gaps = 22/485 (4%) Query: 3 LPFLSIVTFLPFLGVFVILFSS--YLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 LP S++ +P + V F+ L G FG ++T+ +L+ + FD + Sbjct: 2 LPVASLLILVPLIFAVVTFFTKTKQLAAG----FGFLGSLATLGL--TLYAYLNFDSSTA 55 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q E WI + +Y +G+DG+S+ L++L + PF IL +WK E+ + L Sbjct: 56 AMQFYESVSWIPFLGVNYSVGIDGVSMPLILLNAIVIPFMILFTWKEEMESPNRFYGLIL 115 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +++ VIG F++LD ++FYIF+E +L+P+F I+ +WGG+ R +A+YKFF+YT S+ ML Sbjct: 116 TMQAAVIGVFVALDFVVFYIFWELTLVPLFFIVNLWGGANRAHASYKFFIYTHVASLVML 175 Query: 180 FAIVVMCWEK------KTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 I + + T I +L A +F P ++ +++A F K+P FPFH+W Sbjct: 176 LGIFGLFYTALNQTGVPTFDIRELIAQFQFFEPGLMKDGIFLAILFGFLAKLPAFPFHSW 235 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL--ASQYFAPVIFFLSLIAIIYA 289 LP+A+ +APTAGS+ I+LK+GGYG R LP+ P + Q ++ L ++I+Y Sbjct: 236 LPDAYSEAPTAGSILF--ILLKIGGYGLFRISLPMLPNTGSPQLMIMILGLLGSVSILYG 293 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 +L+++ Q D+K++IAYSS++HMGYV +G + V GAMFQ SHGL+ S +F G Sbjct: 294 ALLALRQKDLKRMIAYSSLSHMGYVILGSAGLVTLSVSGAMFQQFSHGLIMSIMFMSAGA 353 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 I TR I GGL MP V MMV MA++GLPG +GFI EFLV+ F N Sbjct: 354 IQTAAGTRIINELGGLAKKMPMLTVAMMVGFMASLGLPGLTGFIAEFLVLTFTFTNLPVF 413 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 V+A +V++A Y LW ++ +FGV EK+ ++D++ + + IA+L ++FG+ P Sbjct: 414 VVIALLAIVVTAGYHLWAMQRAMFGVYN-EKLGDVRDINSIQVFSMAVIALLVLYFGLNP 472 Query: 470 VPIRD 474 P+ D Sbjct: 473 SPVLD 477 >gi|56416874|ref|YP_153948.1| NADH dehydrogenase chain M [Anaplasma marginale str. St. Maries] gi|56388106|gb|AAV86693.1| NADH dehydrogenase chain M [Anaplasma marginale str. St. Maries] Length = 487 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 169/400 (42%), Positives = 260/400 (65%), Gaps = 11/400 (2%) Query: 81 VDGISILLVVLTTFL----TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 VD +S++L VL+TFL + FC+ S + + L+LES+VI F + D+L Sbjct: 68 VDALSMILTVLSTFLFLICSLFCVFSPGGA--PTVPSFFALLLLLESLVIVVFCTHDILW 125 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM-CWEKKTSSII 195 ++IF+EASL+PMF +IG WG +++ AA+KF +YT S+ L A+ + TS Sbjct: 126 YFIFYEASLVPMFFMIGFWGHGDKVGAAFKFLIYTATASVGFLAAVACIDAVANATSGSF 185 Query: 196 DLYAM---SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 D A+ + Q WI F +FA+K+P+ P HTWLP+AHVQAPTAGSV LAG+++ Sbjct: 186 DDVAIGLATSVHLRWQICFWILCFVAFAVKLPVVPCHTWLPSAHVQAPTAGSVLLAGLLI 245 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +RF + + P+ S +FA + LS I++IYASL + Q ++K LIAYSS+AHM Sbjct: 246 KLGGYGLLRFCIQMLPVVSAHFAKFVVCLSAISLIYASLTAFAQRNMKMLIAYSSVAHMS 305 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 +V G+FS ++G+ GA++QMLSHGL+S+ALF CVG++Y R T ++ GL MP+ Sbjct: 306 FVAAGMFSLNEAGILGAVYQMLSHGLISAALFLCVGMVYSRTGTMEMSECRGLASKMPKL 365 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + +++ F+MA+ G+PGTSGF+GEFL ++ VF++ + V + G+VLSA Y L L ++VV Sbjct: 366 SAMIVFFSMASAGIPGTSGFMGEFLSMLGVFKSFGPMVVCFAVGMVLSAAYMLRLCKEVV 425 Query: 433 FGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +G S + D++ E ++ +A+L + G++P P+ Sbjct: 426 WG-SAPAGSDKFGDINAGEFAILAILAILVLVLGVFPAPL 464 >gi|302423937|ref|XP_003009798.1| NADH dehydrogenase subunit 4 [Verticillium albo-atrum VaMs.102] gi|261361688|gb|EEY24116.1| NADH dehydrogenase subunit 4 [Verticillium albo-atrum VaMs.102] Length = 495 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 169/451 (37%), Positives = 284/451 (62%), Gaps = 4/451 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL +++N I S V+ F+ + +Q ++ ++ I F Y LGVDGISI V+LTT + Sbjct: 41 IALVTASVNMILSFVVYVFFNSSSNQYQFVQEHYNIQSFDIY-LGVDGISIYFVLLTTII 99 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P +L++W SI+EN + Y+I L+LE++++ F+ LD+LLFYIFFE+ L P+F++IG++ Sbjct: 100 MPIALLANWNSIKENLKFYLITILLLETLLLAVFMVLDILLFYIFFESILPPLFLLIGLF 159 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF 215 G S ++ A+Y FFLYT +GS+F+L +I+ M T+ L+ + F +++Q+ ++ Sbjct: 160 GSSNKVRASYYFFLYTLWGSLFLLLSILTMYSIMGTTDFDALFK-TNFDYTMQFVLFGGV 218 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 F +FA+K P + WL AHV++P GS+ LAGI+LK+ YG R +LP+ P A+ Sbjct: 219 FIAFAVKTPTIFLNNWLLKAHVESPLGGSIILAGIVLKLSLYGIFRLILPILPKATLDLT 278 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 +++ + +I I+YAS ++ D+K+LIAYSS++H IG FS G+EG++ L+ Sbjct: 279 FIVYTIGVITILYASFSTLRTVDVKELIAYSSVSHAAVYLIGAFSNTIQGIEGSITLGLA 338 Query: 336 HGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 HG VSS LF C G++YDR TR I+ Y G+ MP ++++ + ++ N G P T FIG Sbjct: 339 HGFVSSGLFICAGGILYDRSGTRMIYLYRGVAQLMPLFSILFFILSLGNCGAPLTLNFIG 398 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERC 453 EF+ + VF+ + + A+ +V SA Y+++++ ++ FG S + ++ + D + RE Sbjct: 399 EFMSLYGVFEKLPVLGLFAATSIVFSAAYTIYMFNRITFGGSFTKFFEENISDTTKREFT 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 ++ + + TV GIYP I D+ P+ ++I Sbjct: 459 LLLVLVLFTVILGIYPSLILDSLHYPVVNLI 489 >gi|60117138|ref|YP_209601.1| NADH dehydrogenase subunit 4 [Polysphondylium pallidum] gi|51339702|gb|AAU00616.1| NADH dehydrogenase subunit 4 [Polysphondylium pallidum] Length = 533 Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 160/403 (39%), Positives = 257/403 (63%), Gaps = 16/403 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 GVDGIS++ + LTT L CIL SW I+ + + Y++ L++E ++I F+ +D++ FYI Sbjct: 119 GVDGISMIFIWLTTILIMSCILISWNVIKTDIKFYLVNLLIIELLLINFFVVMDLVHFYI 178 Query: 140 FFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 +E+ LIP+ ++I +WG E+ AAY+ F+YT GSIFML +I + + T+ D + Sbjct: 179 IYESILIPIVIMISMWGSREEKKLAAYQIFVYTLIGSIFMLASIGYLYYSLGTT---DYF 235 Query: 199 AMSKF----PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + + P +Q +++ FF FA+KIP+ P H WL AHV+APTAGSV LAGI+LK+ Sbjct: 236 LIKELLPLIPEFMQKLIFLGFFIGFAVKIPIVPLHLWLLRAHVEAPTAGSVLLAGILLKL 295 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +RF + L P YF P+I LSLI+I+Y + +++Q D+K++IAYSSI+HM V Sbjct: 296 GGYGFLRFNIGLLPEMCTYFFPLIVGLSLISILYTGIATVMQLDVKRIIAYSSISHMNVV 355 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+FS + G+EG ++ M+SHGLVS LF C+GV+Y++ +R +++Y +VH MP +A+ Sbjct: 356 VLGLFSQVLQGIEGGIYLMVSHGLVSGGLFLCIGVLYEQYKSRLLYSYNNVVHVMPIFAI 415 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + + T+AN+ P TS FIGE L+ + + + VA + G++++ +YS WLY ++ F Sbjct: 416 IFFILTLANIAFPITSSFIGELLIFCGIIKKNIVVAFFGALGMIVTVIYSFWLYNRIFFD 475 Query: 435 VSKC--------EKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + ++ +D++ RE + + + FGI P Sbjct: 476 NGMLTSSVKYFNKSGEKYRDINNRELLSIGIMILFVFIFGIKP 518 >gi|109156549|ref|YP_654334.1| NADH dehydrogenase subunit 4 [Astrangia sp. JVK-2006] gi|108744084|gb|ABG02308.1| NADH dehydrogenase subunit 4 [Astrangia sp. JVK-2006] Length = 479 Score = 302 bits (774), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 198/436 (45%), Positives = 279/436 (63%), Gaps = 6/436 (1%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTTF 94 AL S F +L +W FD G FQ IE+ W + L +DG+S+ ++LTTF Sbjct: 30 ALEWSLAIFFSALVLWGGFD-GEGHFQFIEFVEWGGFLDWGPLLFALDGVSLFFLLLTTF 88 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CIL S KSI+ F+E+++ LE +++G FL D+LLFYIFFE LIPMF +IG+ Sbjct: 89 LIPICILISQKSIKFLFKEFLLCLFFLEVLLVGVFLVFDLLLFYIFFEGVLIPMFFLIGI 148 Query: 155 WGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 WG E++ A++ FF +TF GS+F F I+ + T+ L M K F++Q W + Sbjct: 149 WGSREEKVRASFYFFFFTFAGSVFFFFVILFLYQTTGTTDYFLLLNM-KLSFNVQKWALV 207 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 F SFA+K+P+ PFH WLP AHV+AP AGSV LAGI+LK+GGYG +RF P+FP AS Y Sbjct: 208 GVFLSFAVKLPLIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGLLRFSWPIFPEASFY 267 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 +APVI S+IA++Y L++ Q D K+L+AYSS+AHMG V +GIF+ + G+ GA+F M Sbjct: 268 WAPVIIVFSVIAVVYGGLMTCRQIDFKRLVAYSSVAHMGLVPLGIFTHIMEGLVGAVFLM 327 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 L+HG VSSALF V +YDR HTR I Y GL MP +AV M+V +++NMGLP + F+ Sbjct: 328 LAHGFVSSALFIGVTFLYDRHHTRLIKYYRGLTLTMPLFAVSMLVLSLSNMGLPLSCNFV 387 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEF +++ F+ V VL FG + SA+YSL L+ ++ FG + +DL+ +E Sbjct: 388 GEFFSLLAAFKYYYGVGVLVVFGALFSAIYSLSLFNRISFG-GGSNYLLFNRDLNRQEGF 446 Query: 454 MVYPIAVLTVFFGIYP 469 ++P ++ G+ P Sbjct: 447 AMFPFLIIIFLGGVVP 462 >gi|11467925|ref|NP_057986.1| NADH dehydrogenase subunit 4 [Scenedesmus obliquus] gi|8099208|gb|AAF72063.1|AF204057_18 NADH dehydrogenase subunit 4 [Scenedesmus obliquus] gi|7711047|emb|CAB90371.1| NADH dehydrogenase subunit 4 [Scenedesmus obliquus] Length = 521 Score = 302 bits (774), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 157/398 (39%), Positives = 249/398 (62%), Gaps = 2/398 (0%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 G+D +S+ +V+LT L P +L SW + + + + L LES + F SLD+L FY+ Sbjct: 101 GLDSLSLWMVLLTAALMPLAVLCSWNTQNAHSQSFYRLLLALESFLFRCFTSLDLLCFYV 160 Query: 140 FFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 +E SL+PMF++IG+ G R + AAY LYT GS+ ML ++++ T++ + L Sbjct: 161 LYECSLLPMFLLIGLGGSRARKVRAAYLLVLYTLVGSLAMLPCLLLLYSRAGTTNYLLLR 220 Query: 199 AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 +++ S Q +W FF +FA+K+P+ P H WLP AHV+ TAGSV LAG++LK+G YG Sbjct: 221 SLN-IESSRQLLLWWGFFLAFAVKVPLMPLHLWLPEAHVERSTAGSVLLAGVLLKLGTYG 279 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +RF L +FP S Y P + + LI +IY SL ++ Q D+KK++AYSS+AHM V + + Sbjct: 280 LLRFNLYMFPERSAYLGPRVSTICLIGVIYRSLTTLRQVDLKKIVAYSSVAHMSMVVLAL 339 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 F+ + G+ G++F ML+HG+ S ALF CVG +YDR HT+ + GG MP +++ + Sbjct: 340 FTMNEVGILGSIFTMLAHGVRSPALFLCVGALYDRTHTKRLKYLGGAATAMPLFSIWFFI 399 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 F++ NM LP T F+GEFL + +F + + GV+LSA+Y+LW Y +VV G+ K Sbjct: 400 FSLCNMALPLTPNFVGEFLSLCGIFAQNWVSLTICLGGVILSAVYTLWAYARVVHGMPKI 459 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 + + + DL+ RE + +A++ +++G+ P + D+ Sbjct: 460 QYLSGMADLNRREWWSLAILAIIALWWGLKPGAVLDSL 497 >gi|110578637|ref|YP_667826.1| NADH dehydrogenase subunit 4 [Verticillium dahliae] gi|84682164|gb|ABC60423.1| NADH dehydrogenase subunit 4 [Verticillium dahliae] Length = 495 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 169/451 (37%), Positives = 284/451 (62%), Gaps = 4/451 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL +++N I S V+ F+ + +Q ++ ++ I F Y LGVDGISI V+LTT + Sbjct: 41 IALVTASVNMILSFVVYVFFNSSSNQYQFVQEHYNIQSFDIY-LGVDGISIYFVLLTTII 99 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P +L++W SI+EN + Y+I L+LE++++ F+ LD+LLFYIFFE+ L P+F++IG++ Sbjct: 100 MPIALLANWNSIKENLKFYLITILLLETLLLAVFMVLDILLFYIFFESILPPLFLLIGLF 159 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF 215 G S ++ A+Y FFLYT +GS+F+L +I+ M T+ L+ + F +++Q+ ++ Sbjct: 160 GSSNKVRASYYFFLYTLWGSLFLLLSILTMYSIMGTTDFDALFK-TNFDYAMQFVLFGGV 218 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 F +FA+K P + WL AHV++P GS+ LAGI+LK+ YG R +LP+ P A+ Sbjct: 219 FIAFAVKTPTIFLNNWLLKAHVESPLGGSIILAGIVLKLSLYGIFRLILPILPKATLDLT 278 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 +++ + +I I+YAS ++ D+K+LIAYSS++H IG FS G+EG++ L+ Sbjct: 279 FIVYTIGVITILYASFSTLRTVDVKELIAYSSVSHAAVYLIGAFSNTIQGIEGSITLGLA 338 Query: 336 HGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 HG VSS LF C G++YDR TR I+ Y G+ MP ++++ + ++ N G P T FIG Sbjct: 339 HGFVSSGLFICAGGILYDRSGTRMIYLYRGVAQLMPLFSILFFILSLGNCGAPLTLNFIG 398 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERC 453 EF+ + VF+ + + A+ +V SA Y+++++ ++ FG S + ++ + D + RE Sbjct: 399 EFMSLYGVFEKLPVLGLFAASSIVFSAAYTIYMFNRITFGGSFTKFFEENISDTTKREFT 458 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 ++ + + TV GIYP I D+ P+ ++I Sbjct: 459 LLLVLVLFTVILGIYPSLILDSLHYPVVNLI 489 >gi|325277465|ref|ZP_08143072.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas sp. TJI-51] gi|324097408|gb|EGB95647.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas sp. TJI-51] Length = 480 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 184/435 (42%), Positives = 277/435 (63%), Gaps = 17/435 (3%) Query: 65 IEYY-HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +EY WI F S HL +DG+S+L+++LT L +L SWK IQ + + + + + Sbjct: 36 LEYKVQWIQRFGISIHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRHVGFFHLNLMWIL 95 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYKFFLYTFFGSI 176 V+G FL+LD+ LF+ F+E L+PM+ +I +WG S RIYAA KFF++T + Sbjct: 96 GGVVGVFLALDLFLFFFFWEMMLVPMYFLIALWGHSSADGKKTRIYAATKFFIFTQASGL 155 Query: 177 FMLFAIV-VMCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 ML AI+ ++ T+ ++ DL ++ P ++Y + + FF +FA+K+P+ PFH+ Sbjct: 156 IMLVAILGLVLVNYNTTGVLTFNYSDLLK-AQLPAGVEYLLMLGFFIAFAVKLPVVPFHS 214 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L LI I Y + Sbjct: 215 WLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTLGLIGIFYGA 274 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++GA+ QML+HGL ++ALF G + Sbjct: 275 FLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGAVIQMLAHGLSAAALFILSGQL 334 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+RLHTRD+ GGL H + + + F A++GLPGT F+GEFL+++ F + + Sbjct: 335 YERLHTRDMRQMGGLWHRIAYLPAISLFFAAASLGLPGTGNFVGEFLILLGSFVHVPWIT 394 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 V+A+ G+V ++YSL + + FG +K + V L + RE MV +AVL + G+YP Sbjct: 395 VIATTGLVFGSVYSLIMIHRAYFGPAKSDTV--LAGMDGRELIMVLGLAVLLILLGVYPQ 452 Query: 471 PIRDTFSVPLSSIIE 485 P DT + +S + + Sbjct: 453 PFLDTSAATMSGVQQ 467 >gi|124359000|ref|YP_001023801.1| NADH dehydrogenase subunit 4 [Placozoan sp. BZ10101] gi|114177213|gb|ABI53766.1| NADH dehydrogenase subunit 4 [Placozoan sp. BZ10101] Length = 509 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 177/444 (39%), Positives = 268/444 (60%), Gaps = 11/444 (2%) Query: 36 VALGISTINFIFSLFVWSVFDK--GRSSFQMIEYYHWIDYFCSYHLG------VDGISIL 87 +AL S + I ++ +W D+ G + I++ D +G VDGISI Sbjct: 51 IALFWSFFSLIGTIILWLSLDQEGGLTPLMKIDWIEGPDKILPIIMGGPLVFAVDGISIY 110 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 ++LT F+ P IL SW SI+ + ++I LVLE ++ F LD+ FYI FE LIP Sbjct: 111 FLILTAFIVPCSILISWNSIKYLVKSFLICMLVLEFLLYAVFSVLDIFWFYILFEGVLIP 170 Query: 148 MFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF-PF 205 M++I+G+WG E++ AAY FF YT GS+ ML + + T+ + L + + P Sbjct: 171 MYLILGIWGSREEKMQAAYYFFFYTLIGSVIMLLCLFSLYNIHGTTDYLTLVSSNYIVPE 230 Query: 206 SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 ++Q +++ F + A+KIP+FPFH WLP AHV+AP AGSV LAGI+LK+GGYG +R P Sbjct: 231 NLQERLFLGIFLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWP 290 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 + PL +Q AP I + +I I+Y S + Q D+K+L+AYSS+AHMG +I + + G Sbjct: 291 ILPLGAQNLAPAIIAMGIIGIVYGSFGTCRQIDVKRLVAYSSVAHMGLASITLVTHDIIG 350 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 + G++F ML+HG+VSS LF V ++YDR HTR I Y GL +MP +A +M++ ++AN+ Sbjct: 351 LTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSISMPIWATIMIMTSLANIA 410 Query: 386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 P +SGF+GE+L I+S F + V V GV+LSA+YS + ++ FGV + + Sbjct: 411 APPSSGFVGEYLSILSSFNWNPMVGVFVCSGVILSAVYSFYFANRITFGVPG-NLLTFSR 469 Query: 446 DLSLRERCMVYPIAVLTVFFGIYP 469 D++ RE + + +L F G+ P Sbjct: 470 DVNRREFYITASMVLLAFFAGVCP 493 >gi|330965581|gb|EGH65841.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. actinidiae str. M302091] Length = 510 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 190/504 (37%), Positives = 297/504 (58%), Gaps = 26/504 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + G + +AL T+ L++W+ + Sbjct: 1 MILPWLILI---PFIGGLLCWLGERFGSTLPRW--IALLTMTLELALGLWLWATGNFGYA 55 Query: 57 --KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G +E++ WI F HL +DG+S+L+++LT L +L SWK IQ Sbjct: 56 PVPGADPTWALEFHQPWITRFGIDVHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRKVG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + + + V+G FL++D+ +F+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLMWILGGVVGVFLAIDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAI 221 FF++T + ML AI+ V+ +T I YA +K +Y + + FF +FA+ Sbjct: 176 FFIFTQASGLIMLVAILGLVLVHFNQTGVITFAYADLLKTKLAPGTEYILMLGFFIAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P H+WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L Sbjct: 236 KLPVVPLHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMAL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 L+ I Y + ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++G + QM++HGL ++ Sbjct: 296 GLVGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGVLIQMIAHGLSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL + + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILSGQLYERLHTRDMREMGGLWSRIAYIPAISLFFAAASLGLPGTGNFVGEFLILLG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F ++ + +A+ G+V ++YSL + + FG +K ++V LK + RE MV +AVL Sbjct: 416 SFASAPWITAIATSGLVFGSVYSLIMIHRAYFGPAKSDEV--LKGMDGREMIMVLGLAVL 473 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIE 485 V G++P P DT + + + + Sbjct: 474 LVVLGVFPQPFLDTSAATMHGVQQ 497 >gi|17227844|ref|NP_484392.1| NAD(P)H-quinone oxidoreductase subunit 4 [Nostoc sp. PCC 7120] gi|81853127|sp|Q8YZV7|NU4C1_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 1; AltName: Full=NAD(P)H dehydrogenase I, chain 4 1; AltName: Full=NDH-1, chain 4 1 gi|17129693|dbj|BAB72306.1| NADH dehydrogenase subunit 4 [Nostoc sp. PCC 7120] Length = 538 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 175/491 (35%), Positives = 283/491 (57%), Gaps = 16/491 (3%) Query: 1 MNL---PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 MNL P+L+ + LP + I ++G+ + + + + F W +D Sbjct: 2 MNLIEFPWLTAIIALPLVAALAIPIIPDKEGKTVRWYGLGVAFADFALMIAAF-WHYYDF 60 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 SS+Q +E Y W+ ++ + VDG+S+ L++LT + I ++WK + R + Sbjct: 61 QSSSYQFVEKYAWVPQIGLNWSVAVDGLSMPLLLLTGLINTLAIFAAWK-VTNKPRLFYG 119 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LV+ S +G F++ D+LLF++ +E L+P++++I +WGG +R YAA KF LYT SI Sbjct: 120 LMLVMYSAQLGVFVAQDLLLFFLMWEIELVPVYLLISIWGGPKRRYAATKFILYTAAASI 179 Query: 177 FMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F+L A + + T + I M ++P +I+ + F +F +K+P+FP HTWLP+A Sbjct: 180 FILVAGFALAFSGDTVTFDIAALGMKEYPKAIELLAYAGFLIAFGVKLPIFPLHTWLPDA 239 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A GS+ LAG++LKMGGY IRF + + P A YFAPV+ L ++ I+Y + + Sbjct: 240 HGEASAPGSMILAGVLLKMGGYALIRFNMEMLPDAHVYFAPVLAILGVVNIVYGACCAFA 299 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QT++K+ +AYSSIAHMG+V IG+ S + GV GA+ QM+SHGLV+++LFF GV Y+R H Sbjct: 300 QTNLKRRLAYSSIAHMGFVLIGLASYTEIGVSGAVLQMVSHGLVAASLFFLTGVTYERTH 359 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM-----SVFQNSNTVA 410 T + GG+ MP+ + MA++ LPG SGF+GE +V + V+ +S V Sbjct: 360 TLLMDKMGGIGKIMPKTFALYTAGAMASLALPGMSGFVGELMVFIGIATSDVYSSSFKVV 419 Query: 411 V--LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFG 466 V L++ GV+L+ +Y L + R+V +G E + D+ RE + + + + G Sbjct: 420 VVLLSAVGVILTPIYLLSMLRQVFYGKQSDELHLDAFVPDVKPRELFITASLLLPIIGIG 479 Query: 467 IYPVPIRDTFS 477 +YP I T+ Sbjct: 480 LYPKLITQTYD 490 >gi|22299362|ref|NP_682609.1| NAD(P)H-quinone oxidoreductase subunit 4 [Thermosynechococcus elongatus BP-1] gi|81844863|sp|Q8DHX4|NU4C2_THEEB RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 2; AltName: Full=NAD(P)H dehydrogenase I, chain 4 2; AltName: Full=NDH-1, chain 4 2 gi|22295545|dbj|BAC09371.1| NADH dehydrogenase subunit 4 [Thermosynechococcus elongatus BP-1] Length = 533 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 167/462 (36%), Positives = 272/462 (58%), Gaps = 14/462 (3%) Query: 37 ALGISTINFIFSLFV-WSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 AL I+ + F S V W +D + FQM+E W+ ++ L VDG+++ L++LT Sbjct: 37 ALAIALLEFGLSAMVFWRHYDAQSAQFQMVETVPWLPQIGLNWSLAVDGLAVPLILLTGL 96 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 + I ++W+ +++ R + L L S IG F + D++LF++ +E L+P++++I + Sbjct: 97 VNTLAIFAAWQ-VKQKPRLFYFLMLALYSAQIGVFAAQDLILFFLIWELELVPVYLLISI 155 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWI 213 WGG++R YAA KF LYT GS+F+L A + M + S+ + + +P +++ + Sbjct: 156 WGGAQRQYAATKFILYTAVGSLFILIAGLGMAFYGGDFSLNMAALGLKNYPLALELLAYA 215 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 F +F +K+P+FP HTWLP+AH +A S+ LAG++LKMGGYG IRF L + P A Y Sbjct: 216 GFLIAFGVKLPIFPLHTWLPDAHGEASAPVSMVLAGVLLKMGGYGLIRFNLQMLPDAHIY 275 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAPV+ L ++ IIY +L + Q ++K+ +AYSSI+HMG+V +GI + G+ GAM QM Sbjct: 276 FAPVLIALGVVNIIYGALTAFGQENLKRRLAYSSISHMGFVLLGIGALNGIGLNGAMLQM 335 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGL+++ LFF GV YDR HT + G+ +MP+ + +MA++ LPG SGF+ Sbjct: 336 LSHGLIAAVLFFLAGVTYDRTHTLAMEKMSGIAQSMPKTFALFTASSMASLALPGMSGFV 395 Query: 394 GEFLVIMSVFQNSNT--------VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-L 444 E V + + NS+ V LA+ GV+++ +Y L + R+V G + + L Sbjct: 396 SELTVFLGL-TNSDAYSTTFKVGVIFLAAVGVIITPVYLLSMVRRVFTGKQAGDMFDKLL 454 Query: 445 KDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 D++ RE + + V + G+YP T+ V ++I + Sbjct: 455 LDINPRETFIALSLLVPIIAVGMYPKVATQTYDVTTTAIARH 496 >gi|240266523|ref|YP_002970872.1| NADH dehydrogenase subunit 4 [Arthroderma obtusum] gi|237781125|gb|ACR19616.1| NADH dehydrogenase subunit 4 [Arthroderma obtusum] Length = 487 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 182/442 (41%), Positives = 274/442 (61%), Gaps = 17/442 (3%) Query: 55 FDKGRSSFQMI--EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENF 111 FD FQ I E + I YF Y LG+DGISI ++LTT + P ++++W SI+ +N Sbjct: 53 FDFSSKQFQYIQLEEIYKISYFDIY-LGIDGISIYFLLLTTMIMPISLVANWNSIESKNI 111 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 ++I L+LE++++ FL LD+LLFYIFFE+ L P+F++IG++G S+++ A++ FLYT Sbjct: 112 LSFVIIILLLETLLLAVFLVLDILLFYIFFESILPPLFLLIGIFGSSDKVRASFYLFLYT 171 Query: 172 FFGSIFMLFAIVVMCWEKKTSSII---DLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMF 226 GS+FML +I+ M SSI+ D A+SK F + Q +++ F SFA+K P Sbjct: 172 LLGSLFMLLSIITM------SSIMGATDFDALSKANFGYITQLFLFYGIFISFAVKTPTI 225 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 +TWL AHV++P AGS+ LAGI+LK+ YG R +LPL P AS + +++ + +I I Sbjct: 226 FLNTWLLKAHVESPLAGSIILAGIVLKLSLYGIFRLILPLLPKASMDYTYIVYVIGVITI 285 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 +YAS ++ DIK+LIAYSS++H + FS G+EGA+ L+HG VSS LF C Sbjct: 286 LYASFSTLRTIDIKELIAYSSVSHAAVYLLSAFSNTIQGIEGAITLGLAHGFVSSGLFIC 345 Query: 347 V-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 V G++YDR TR I Y G+ MP + ++ + ++ N G P T FIGEF+ + +F+ Sbjct: 346 VGGILYDRSSTRLITYYRGMAQLMPIFCILFYILSLGNCGSPLTINFIGEFMSLYGIFER 405 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK-VQQLKDLSLRERCMVYPIAVLTVF 464 + + VLAS +V SA Y+++++ ++ FG +KDLS RE ++ + V TVF Sbjct: 406 ISVLGVLASTSIVFSAAYTIFMFNRIAFGGQFSSYFFNYVKDLSKREFILLISLVVPTVF 465 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 FGIYP I D +S +I N Sbjct: 466 FGIYPAVILDGLHYSVSGLIYN 487 >gi|254424410|ref|ZP_05038128.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Synechococcus sp. PCC 7335] gi|196191899|gb|EDX86863.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Synechococcus sp. PCC 7335] Length = 534 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 183/468 (39%), Positives = 271/468 (57%), Gaps = 26/468 (5%) Query: 37 ALGISTINFIFSLFVW-SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 ALG S F L+V+ S ++ G S Q+++ Y WI F S+ LGVDG+S LV+L+ F Sbjct: 38 ALGASLAEFGLILYVFASQYEMGVSGLQLVDTYPWITQFGLSWSLGVDGLSFPLVLLSGF 97 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T +++SW +I+ R Y L++ S +G FL+ DM+LF+I +E L+P++++I + Sbjct: 98 VTTLAVIASW-NIKLKPRLYYSMILLMFSAQLGVFLAQDMMLFFIMWELELVPVYLLISI 156 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL--YAMSKFPFSIQYWMW 212 WGG R YAA KF +YT S+F+L + + + T S DL A +P Q + Sbjct: 157 WGGQRRQYAATKFIIYTATCSVFILVVALALAFFGGTFSF-DLTELAAKNYPLPFQLICY 215 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 + +F K+P+FP HTWLP+AH +AP S+ LAG++LKM GYG IR + + P A Sbjct: 216 LGLLVAFGAKLPIFPLHTWLPDAHSEAPAPISMILAGVLLKMAGYGLIRMNIEMLPDAHL 275 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 YFAPV+ FL +I I+YASL + Q ++K+ +AYSS+AHMG+V +G+ + G+ GAM Q Sbjct: 276 YFAPVLAFLGVINIVYASLTAFAQDNLKRRMAYSSVAHMGFVLLGLAAFNSLGMSGAMLQ 335 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 M+SHGLV++ LFF GV Y+R HT + GG+ MP + MA++ LPG SGF Sbjct: 336 MISHGLVAAVLFFLSGVAYERTHTLSMNKMGGMAKAMPITFALFTAGAMASLALPGMSGF 395 Query: 393 IGEFLVIMSVFQNS-------NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 I E V + + + + +LA+ GVVLS +Y L + R V +G S K+ K Sbjct: 396 IAEITVFLGMATSDAYNVFFKAAIVMLAAVGVVLSPIYLLSMLRSVFYGESSEVKLPIDK 455 Query: 446 DLSLRERCMVYPIAVL--TVFFGIYPVPIRDTFSVPLSSIIENYTLKT 491 + R M I++L V G+YP I+ Y+LKT Sbjct: 456 SWEIVPREMFVAISLLIPIVGIGLYP-----------KIAIQTYSLKT 492 >gi|325003712|ref|ZP_08124824.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pseudonocardia sp. P1] Length = 552 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 167/489 (34%), Positives = 268/489 (54%), Gaps = 41/489 (8%) Query: 43 INFIFSLFVWSVFD----KGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTP 97 + F+ + W ++ + + FQ+ WI F ++ GVDGI++ ++ LT FL P Sbjct: 55 LEFVLVVVAWGMYSIPSAQAGTRFQLEFSLPWIPAFGTHIAFGVDGIALAMIALTAFLVP 114 Query: 98 FCILSSWKSIQENFRE---YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +L +W R Y L E+ ++G F + D+ LFY+FFEA L+PM+ +IG Sbjct: 115 GLMLFAWAEKLPEGRSAAGYFALLLATEATLVGVFAATDVFLFYVFFEAMLVPMYFLIGR 174 Query: 155 WGGSERIYAAYKFFLYTFFGSIFML------FAIVVMCWEKKTSSIIDLYAMS-KFPFSI 207 +GG R YAA KFFLY+ G + ML F + + T + +L M+ P S Sbjct: 175 FGGPRRQYAAVKFFLYSLLGGLIMLASLIGLFVVSEQQLGQGTFTWAELQTMAASVPPST 234 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+++ FF +FAIK P+ PFHTWLP+A +AP G+V L G++ K+G +G +R+LLPLF Sbjct: 235 QVWLFLGFFVAFAIKAPLVPFHTWLPDAGAEAPIVGAVLLVGVLDKVGTFGFLRYLLPLF 294 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P ASQ APV+ L++ I+YA+L+++ QTD+ + +AY+S+AH G++ +G+F+ Sbjct: 295 PQASQIMAPVVLVLAVAGIVYAALLAVGQTDMGRFVAYTSVAHFGFIALGVFAFSSQAFA 354 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 GA M++HGL + LF VGV+ R +R I YGG+ P A +++ M+++ LP Sbjct: 355 GATLYMVNHGLSTGMLFVMVGVLISRGGSRLISDYGGVAKLAPVMAGCLLLAGMSSLALP 414 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG------------- 434 GT+ F+ EFLV++ F ++A+ G++ +ALY LW Y++ + G Sbjct: 415 GTNSFVSEFLVLLGSFPTRPVFTIIATVGIIFAALYVLWFYQRTMQGPVRGDAVIAALER 474 Query: 435 -------------VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 V+ K DL+ RE ++ P+ V V G YP P+ D + ++ Sbjct: 475 GGAGGPGSMIDPVVAAQRKGSGFPDLTGREIGVLAPLIVAIVVLGFYPAPVLDLINPSVT 534 Query: 482 SIIENYTLK 490 + + L Sbjct: 535 ATMAELGLP 543 >gi|227535959|ref|ZP_03966008.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] gi|227244202|gb|EEI94217.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] Length = 481 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 162/416 (38%), Positives = 258/416 (62%), Gaps = 13/416 (3%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 +S Q + Y WI+ +H+G+DGIS+ LV+LT L P +LS++ + ++AF Sbjct: 53 ASVQFEQNYSWIESLGIHFHIGLDGISLPLVLLTNALMPLIVLSTFSKTYKGNLYALVAF 112 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 + ++ ++ F +LD FY+ +E +LIP++ I +WG +RI KFF+YTF GSIFM Sbjct: 113 M--QAGLVLVFTALDAFTFYVGWEIALIPIYFICALWGEGDRIRVNLKFFVYTFLGSIFM 170 Query: 179 LFAIVVMCWEK-----KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 L AI+ + + + SS + L S+Q W++ AFF +FAIKIP+FPFHTW P Sbjct: 171 LVAIIYLQQQTVNKDFEWSSFVAL----DLTESVQRWIFWAFFLAFAIKIPLFPFHTWQP 226 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 N + APT G++ LAGIMLKMG YG IR+L+P+ P + + L++I I+YAS+++ Sbjct: 227 NTYTNAPTVGTMLLAGIMLKMGIYGLIRWLIPIAPEGVAEYGHIAMILAVIGIVYASIIA 286 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + Q D+K+LIAYSSIAH+G ++ G+F+ G++GAM QM++HG+ LF+ + +I + Sbjct: 287 IQQKDMKRLIAYSSIAHVGLISAGVFAWNLQGLQGAMIQMINHGISVIGLFYVLDIIASK 346 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 TR + GGL MP A+ ++ M +GLP T+GF+GEFL++M V++ AV A Sbjct: 347 TGTRSLADLGGLAKRMPNLAIFFLIIVMGAVGLPLTNGFVGEFLLLMGVYKYGFWYAVFA 406 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++L A+Y L LY+K + G K E+ + D++ E ++ + + ++ G+ P Sbjct: 407 GLTLILGAVYMLRLYQKSMLGPLK-EQNSHVTDINGHEIVLLSIVVIAIIYIGVTP 461 >gi|268591146|ref|ZP_06125367.1| NADH-quinone oxidoreductase, M subunit [Providencia rettgeri DSM 1131] gi|291313372|gb|EFE53825.1| NADH-quinone oxidoreductase, M subunit [Providencia rettgeri DSM 1131] Length = 506 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 181/479 (37%), Positives = 275/479 (57%), Gaps = 25/479 (5%) Query: 36 VALGISTINFIFSLFVWS------VFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILL 88 +AL I I S+ +W V +G +Q + + WI +HL +DG+S+L+ Sbjct: 31 IALATMGITLILSVQLWLEGNYSLVNPQGIPQWQSVFFMPWIPSLGIDFHLAIDGLSLLM 90 Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 VVLT + F ILSSW Q+N Y L + + V+G F ++D+ LF+ F+E LIPM Sbjct: 91 VVLTAIMGAFSILSSWSENQKNQGAYHFNLLWIITGVMGIFTAVDLFLFFFFWEMMLIPM 150 Query: 149 FVIIGVWG--GSER---IYAAYKFFLYTFFGSIFMLFAIVVMCWEK-KTSSII----DLY 198 + +I WG GS+ I AA KFF+YT + ML +I+ + TS ++ + Sbjct: 151 YFLIANWGHKGSDNRKHINAATKFFIYTQASGLIMLVSIIGLALANYNTSGVLTFDYNQL 210 Query: 199 AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 ++ ++ + + + FF +FA+K+P+ PFH W+ + Q+PTAGSV ++GIMLK YG Sbjct: 211 LGAELSSNVAFMLMLGFFIAFAVKMPLVPFHGWMADTQEQSPTAGSVDISGIMLKTAAYG 270 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +RF LPLFP AS F PV L +I+I Y + ++ QTDIK+L AYSS++HMG+VT+ I Sbjct: 271 LLRFTLPLFPEASIQFTPVAMTLGVISIFYGAWLAFKQTDIKRLAAYSSLSHMGFVTVAI 330 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 ++G +GA+ QM+++GL +AL G +Y+R TRD+ GGL + + + Sbjct: 331 YAGSTLAYQGAVVQMITNGLSGAALIIISGQLYERTQTRDMRMMGGLWKRIKWLPGMSLF 390 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 F A +G+PGT FIGEF+++ F V + FGVV +++YSLW+ ++ +G K Sbjct: 391 FAAATLGMPGTGNFIGEFMILFGSFSQFTLVTCIMVFGVVFASIYSLWMMQQTYYGTPKS 450 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSV 497 EK ++K L+ RE ++ +A L V G YP PI DT SI TL YS S+ Sbjct: 451 EK--EMKGLTAREFGVLLALAALLVIIGFYPQPILDT------SIGSMETLHNLYSASL 501 >gi|73670840|ref|YP_306855.1| F420H2 dehydrogenase subunit M [Methanosarcina barkeri str. Fusaro] gi|72398002|gb|AAZ72275.1| F420H2 dehydrogenase subunit M [Methanosarcina barkeri str. Fusaro] Length = 495 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 178/483 (36%), Positives = 275/483 (56%), Gaps = 18/483 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LP S++ +P + V F+ + G+A S +L+ + FD ++ Sbjct: 2 LPVASLLILVPLIFAAVTFFTKT----KEQAAGLAFLGSLATLGLTLYAYLNFDSSTAAM 57 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q E WI Y +G+DGIS+ L++L + PF IL SWK +E+ + L + Sbjct: 58 QFFESIDWIPLLGVKYSVGIDGISMPLILLNAIVIPFLILYSWKEEREDSNRFYGLILTM 117 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML-- 179 ++ VIG F++LD ++FYIF+E +LIP+F ++ +WGG +R +A+YKFF+YT S+ ML Sbjct: 118 QAAVIGVFVALDFVVFYIFWELTLIPLFFMVNIWGGEKRAHASYKFFIYTHVASLVMLLG 177 Query: 180 -FAIVVMCWEKKTSSIIDLYAM-SKFPFSIQYWMWIAFFCS----FAIKIPMFPFHTWLP 233 F + W++ D+ + +F F + A F S F K+P FPFH+WLP Sbjct: 178 IFGLFYASWQQTGVPTFDIRELVGQFQFLGSGLLRNAIFLSIIFGFLAKLPTFPFHSWLP 237 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS--QYFAPVIFFLSLIAIIYASL 291 +A+ +APTAGSV I+LK+GGYG R LP+ P + ++ L +I+Y +L Sbjct: 238 DAYTEAPTAGSVLF--ILLKIGGYGLFRISLPMLPNTGNPELMITILGLLGAFSILYGAL 295 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 +++ Q D+K++IAYSS++HMGYV +G + V GAMFQ SHGL+ S +F G I Sbjct: 296 LALRQKDLKRMIAYSSLSHMGYVLLGSAGFVALSVSGAMFQQFSHGLIMSIMFMSAGAIQ 355 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 TR I GGL MP AV+MM+ MA++GLPG +GFI EFLV+ + N + Sbjct: 356 TSTGTRIINNLGGLAKKMPTLAVLMMLGFMASLGLPGLTGFIAEFLVLAFSYVNLPGFVL 415 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 LA +V++A Y LW ++ +FGV EK+ ++D++ + + IA+L V+FG P P Sbjct: 416 LALLAIVITAGYHLWAMQRAMFGVYN-EKLGDVRDINSLQVFSMAVIALLVVYFGWNPNP 474 Query: 472 IRD 474 + + Sbjct: 475 VLN 477 >gi|158335647|ref|YP_001516819.1| NAD(P)H-quinone oxidoreductase subunit 4 [Acaryochloris marina MBIC11017] gi|193806218|sp|B0C4B4|NU4C_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|158305888|gb|ABW27505.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain M [Acaryochloris marina MBIC11017] Length = 534 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 174/499 (34%), Positives = 277/499 (55%), Gaps = 25/499 (5%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRSSF 62 P+LS + F P + + F AL I I+F+ ++ ++ +D S Sbjct: 7 PWLSTLIFFPIMATVALPFIPDPKGKGDPIRWYALVIGLIDFVLLIYAFYTQYDFAESGL 66 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 QM+E+Y W+ + +G DG+S+ L++LT F+T IL+SW ++ + FL+L Sbjct: 67 QMVEHYDWLPQLGVQWSVGADGLSMPLILLTGFITSLAILASWPV---TYKPRLFYFLIL 123 Query: 122 E--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 I F D+L+F++ +E L+P+++++ +WGG +R+YAA KF LYT S+F+L Sbjct: 124 AMYGGQIAVFAVQDLLVFFLVWELELVPVYLLLSIWGGYKRLYAATKFILYTAISSLFIL 183 Query: 180 FAIVVMCW-EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A + M + + + A +P + Q + F +FA+K+P+ P HTWLP+AH + Sbjct: 184 VAALAMAFFGPDLTFDLQSLAAKDYPLTFQLLCYTGFLVAFAVKLPIVPLHTWLPDAHGE 243 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + LAGI+LKMGGY IR + L P A YFAP + L ++ IIYA+L S Q + Sbjct: 244 ATAPVHMLLAGILLKMGGYALIRMNVELLPDAHAYFAPALIILGVVNIIYAALTSFAQRN 303 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ IAYSSI+HMG+V IGI S G+ GA+ QM+SHGL+ ++LFF VG YDR HT Sbjct: 304 LKRKIAYSSISHMGFVLIGIASFTDLGMSGAVLQMVSHGLIGASLFFLVGATYDRTHTLI 363 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ NMP+ + +MA++ LPG SGF+ E +V + + + V + Sbjct: 364 LEEMGGVAQNMPKIFAMFTTCSMASLALPGMSGFVAELMVFVGLATSDAYSLAFRVPVVI 423 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPIAVLTVFF 465 LA GV+L+ +Y L + R++ +G E ++L D RE C++ PI + Sbjct: 424 LAGIGVILTPIYLLSMLREIFYGPENKELTSHEKLVDAEPREIFVIACLLVPI----IGI 479 Query: 466 GIYPVPIRDTFSVPLSSII 484 G+YP I + + ++ Sbjct: 480 GLYPKIITQIYDAKTTQLV 498 >gi|148546973|ref|YP_001267075.1| NADH dehydrogenase subunit M [Pseudomonas putida F1] gi|148511031|gb|ABQ77891.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pseudomonas putida F1] Length = 510 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 185/435 (42%), Positives = 277/435 (63%), Gaps = 17/435 (3%) Query: 65 IEYY-HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +EY WI F S HL +DG+S+L+++LT L +L SWK IQ + + + + + Sbjct: 66 LEYKVQWIQRFGISIHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRHVGFFHLNLMWIL 125 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYKFFLYTFFGSI 176 V+G FL+LD+ LF+ F+E L+PM+ +I +WG S RIYAA KFF++T + Sbjct: 126 GGVVGVFLALDLFLFFFFWEMMLVPMYFLIALWGHSSADGKKTRIYAATKFFIFTQASGL 185 Query: 177 FMLFAIV-VMCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 ML AI+ ++ T+ ++ DL ++ P I+Y + + FF +FA+K+P+ PFH+ Sbjct: 186 IMLVAILGLVLVNYNTTGVLTFNYSDLLK-AELPAGIEYVLMLGFFIAFAVKLPVVPFHS 244 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L LI I Y + Sbjct: 245 WLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTLGLIGIFYGA 304 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++GA+ QML+HGL ++ALF G + Sbjct: 305 FLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGAVIQMLAHGLSAAALFILSGQL 364 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+RLHTRD+ GGL H + + + F A++GLPGT F+GEFL+++ F + + Sbjct: 365 YERLHTRDMRQMGGLWHRIAYLPAISLFFAAASLGLPGTGNFVGEFLILIGSFVHVPWIT 424 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 V+A+ G+V ++YSL + + FG +K + V L + RE MV +AVL + G+YP Sbjct: 425 VIATTGLVFGSVYSLIMIHRAYFGPAKTDTV--LAGMDGRELIMVLGLAVLLILLGVYPQ 482 Query: 471 PIRDTFSVPLSSIIE 485 P DT + +S + + Sbjct: 483 PFLDTSAATMSGVQQ 497 >gi|302035614|ref|YP_003795936.1| NADH-quinone oxidoreductase membrane subunit M [Candidatus Nitrospira defluvii] gi|300603678|emb|CBK40009.1| NADH-quinone oxidoreductase, membrane subunit M [Candidatus Nitrospira defluvii] Length = 519 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 172/499 (34%), Positives = 281/499 (56%), Gaps = 23/499 (4%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS + FLP G V+ +L L I+ + + FV F ++ Q Sbjct: 10 PILSYLIFLPLAGAAVL----WLIEDEDLLKTTTLCITLVELALACFVLVRFVPDSAAMQ 65 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E+ W+ YHL VDGIS+L V LT FLT ++ SW +++ R Y +A L LE Sbjct: 66 FAEHARWMPALGIGYHLAVDGISVLFVGLTAFLTVLVVIYSWDTVRNQVRLYFMALLALE 125 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFA 181 + +G F S+D++LF++F+E LIP + +I +WGG +ER YAA K+ LYT GS+FML Sbjct: 126 TTTMGIFASIDLILFFVFWELMLIPSYFLIKLWGGGAERHYAALKYVLYTLLGSVFMLVG 185 Query: 182 IVVM-----CWEKKTSSIIDLYAMS-------KFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 I ++ W T + +Y+ P S Q ++ F FA K P+FPFH Sbjct: 186 IALLDINYHQW-AVTHHLDHVYSFDLLELLSVPIPLSQQILIFWLMFMGFAFKAPVFPFH 244 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY--FAPVIFFLSLIAII 287 TWLP+A V+ P +V LAG +K+G YG +RF PL P AS+ ++ L+L AI+ Sbjct: 245 TWLPDALVEGPIGMAVMLAG--MKLGTYGFLRFTFPLLPDASKSEGVVSIVMVLALAAIL 302 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 Y ++V+++Q+D K+L+A+SSI+H+G+V +G+F+ G++G++ M++ G ++ LFF Sbjct: 303 YGAVVALIQSDFKRLLAFSSISHLGFVVVGLFALNFQGLQGSLLTMINLGFSTAGLFFMA 362 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 G + R + + ++GG +P A +++ MA++GLPGT+GF+GEFL+++ F+ Sbjct: 363 GFLSTRQQSSQLSSFGGFAKQVPLLASFLLLIGMASIGLPGTNGFVGEFLILLGAFKAKW 422 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 +A GV+ A Y LW Y + + G +KDL +RE + ++V+ ++ G+ Sbjct: 423 WYGAVAVTGVIFGAAYFLWYYERAMLGPLSKNISATIKDLHMREITIALSLSVMILWIGL 482 Query: 468 YPVPIRDTFSVPLSSIIEN 486 YP P + + ++++ Sbjct: 483 YPSPFLRMMNGSIQALVDR 501 >gi|307154669|ref|YP_003890053.1| proton-translocating NADH-quinone oxidoreductase subunit M [Cyanothece sp. PCC 7822] gi|306984897|gb|ADN16778.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7822] Length = 533 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 176/500 (35%), Positives = 288/500 (57%), Gaps = 25/500 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 + +P+L+ + LP F I F S RS ALGI + + + W +D Sbjct: 4 IQIPWLTAIILLPLCAAFAIPFMS--DKEGRSVRWYALGIGLADLVLMSYAFWYQYDINS 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S Q+IE Y W+ ++ +GVDG+S+ L+VL+ ++ +L+S K ++ + + Sbjct: 62 SELQLIETYSWVPQLGLNWSVGVDGLSMPLIVLSGLISTLALLASMK-VERKPKLFYFLM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L S IG F + D+LLF++ +E L+P++++I +WGG +R+YAA KF LYT SIF+ Sbjct: 121 LLLYSAQIGVFAAQDLLLFFLMWELELVPVYILISIWGGPKRLYAATKFILYTALASIFI 180 Query: 179 LFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A + + + + T ++ +L M +FP +++ + F +FA+K+P+FP HTWLP+AH Sbjct: 181 LVAALGLAFYGDTVTFNMTEL-GMKQFPLALEVLAYAGFLIAFAVKLPIFPLHTWLPDAH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A S+ LAG++LKMGGYG IR + + P A FAP++ L +I I+Y + + Q Sbjct: 240 SEASAPVSMILAGVLLKMGGYGLIRLNIEMLPHAHVKFAPLLVILGVINIVYGAFAAFGQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 T++K+ +A SSI+HMG+V +GI S G+ GA+ QMLSHGL+++ALFF G Y+R HT Sbjct: 300 TNLKRRLASSSISHMGFVLVGIASFTSIGMNGAVLQMLSHGLIAAALFFLCGSTYERTHT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NTV 409 + GGL MP+ + +MA++ LPG SGF+ E V + Q+ V Sbjct: 360 LMMDEMGGLAKAMPKIFALFTAASMASLALPGMSGFVSELTVFLGAVQSDVYSSSFKMMV 419 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLK-DLSLRE----RCMVYPIAVLTV 463 +LA+ G++++ +Y L R V +G ++ E K + + D RE C++ PI + Sbjct: 420 TLLAAVGLIVTPIYLLSTLRVVFYGKNETEFKFDKFQADAKPREIFVTACLLIPI----I 475 Query: 464 FFGIYPVPIRDTFSVPLSSI 483 G+YP T+ + + + Sbjct: 476 AIGLYPKLATTTYDLKTTQV 495 >gi|26990824|ref|NP_746249.1| NADH dehydrogenase subunit M [Pseudomonas putida KT2440] gi|24985831|gb|AAN69713.1|AE016607_7 NADH dehydrogenase I, M subunit [Pseudomonas putida KT2440] Length = 510 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 185/435 (42%), Positives = 277/435 (63%), Gaps = 17/435 (3%) Query: 65 IEYY-HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +EY WI F S HL +DG+S+L+++LT L +L SWK IQ + + + + + Sbjct: 66 LEYKVEWIKRFGISIHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRHVGFFHLNLMWIL 125 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYKFFLYTFFGSI 176 V+G FL+LD+ LF+ F+E L+PM+ +I +WG S RIYAA KFF++T + Sbjct: 126 GGVVGVFLALDLFLFFFFWEMMLVPMYFLIALWGHSSADGKKTRIYAATKFFIFTQASGL 185 Query: 177 FMLFAIV-VMCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 ML AI+ ++ T+ ++ DL ++ P I+Y + + FF +FA+K+P+ PFH+ Sbjct: 186 IMLVAILGLVLVNYNTTGVLTFNYSDLLK-AELPAGIEYVLMLGFFIAFAVKLPVVPFHS 244 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L LI I Y + Sbjct: 245 WLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTLGLIGIFYGA 304 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++GA+ QML+HGL ++ALF G + Sbjct: 305 FLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGAVIQMLAHGLSAAALFILSGQL 364 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+RLHTRD+ GGL H + + + F A++GLPGT F+GEFL+++ F + + Sbjct: 365 YERLHTRDMRQMGGLWHRIAYLPAISLFFAAASLGLPGTGNFVGEFLILIGSFVHVPWIT 424 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 V+A+ G+V ++YSL + + FG +K + V L + RE MV +AVL + G+YP Sbjct: 425 VIATTGLVFGSVYSLIMIHRAYFGPAKTDTV--LAGMDGRELIMVLGLAVLLILLGVYPQ 482 Query: 471 PIRDTFSVPLSSIIE 485 P DT + +S + + Sbjct: 483 PFLDTSAATMSGVQQ 497 >gi|58219950|gb|AAW67491.1| NADH dehydrogenase subunit 4 [Fusarium oxysporum] Length = 507 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 178/482 (36%), Positives = 295/482 (61%), Gaps = 5/482 (1%) Query: 6 LSIVTFLPFLGVFVIL-FSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS + +P LG V+ SY + +AL S IN I SL ++ +F+ + FQ Sbjct: 25 LSSLITIPVLGTIVVASIGSYKKNSKLYTKTIALTSSIINLIISLVMFILFNNSSNQFQY 84 Query: 65 IEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 ++ ++ + F Y LGVDGISI ++LTT + P +LS+W SI+EN + Y+I L+LE++ Sbjct: 85 VQEHYNVQLFDIY-LGVDGISIYFILLTTIIMPIALLSNWDSIKENVKSYLIIMLLLETL 143 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++ F++LD++ FYIFFE+ L P+F++IG++G ++ A+Y FLYT +GS+F+L +I+ Sbjct: 144 LLAVFMTLDIMSFYIFFESILPPLFILIGLYGSDNKVSASYYLFLYTLWGSLFLLLSILS 203 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 ++ L+ ++ F + Q +++I F SFA+K P + WL AHV++P GS Sbjct: 204 TSSIMGSTDFDTLFKLN-FEYKTQIFLFIGIFISFAVKTPTIFLNNWLLKAHVESPLGGS 262 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+ YG R +LP+ P AS + V+F +++I IIYAS ++ TD+K+LIA Sbjct: 263 IVLAAIVLKLSLYGVFRLILPILPKASLDYTFVVFTIAVITIIYASFSTLRTTDVKELIA 322 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYG 363 YSS+ H IG+FS G+EG++ L+HG VSS LF C G++YDR TR I+ Y Sbjct: 323 YSSVCHASVYLIGVFSNTIQGLEGSIILGLAHGFVSSGLFICAGGILYDRTGTRLIYFYR 382 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ MP +A++ + + N G P T F+GEF+ + S+ + + V A VV SA Y Sbjct: 383 GITQLMPIFAILFFILALGNCGAPLTLNFVGEFMSLYSIIERLPVLGVFACSSVVFSAAY 442 Query: 424 SLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 +++++ ++ FG S +++ + D++ RE +++ + + TV G+YP I + ++S Sbjct: 443 TIYMFNRISFGGSFTRFLEESIYDVNKREFILLFILVLFTVILGVYPSLILNVLDYSMNS 502 Query: 483 II 484 +I Sbjct: 503 LI 504 >gi|145225072|ref|YP_001135750.1| NADH dehydrogenase subunit M [Mycobacterium gilvum PYR-GCK] gi|145217558|gb|ABP46962.1| NADH dehydrogenase subunit M [Mycobacterium gilvum PYR-GCK] Length = 511 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 174/444 (39%), Positives = 258/444 (58%), Gaps = 24/444 (5%) Query: 55 FDKGRSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF-- 111 FD FQ +E Y WI F + Y LG+DGI++ LVVLT L P I++ W + Sbjct: 40 FDPAGDQFQFVENYRWIPSFGTGYILGIDGIALALVVLTAVLLPLLIIAGWNDAGDRLSW 99 Query: 112 --REYMIAF---LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYK 166 R I F L +E MV+ + +SLD+LLFY+FFEA LIPM+ +IG +GG R AA K Sbjct: 100 GGRSTHIYFALTLAVEGMVLISLVSLDILLFYVFFEAMLIPMYFLIGGFGGEHRGRAAVK 159 Query: 167 FFLYTFFGSIFMLFAIVVMCWEKKTSSIID---------LYAMSKFPFSIQ----YWMWI 213 F LY G + ML A+V + TS D + A+S F++ + ++ Sbjct: 160 FLLYNLVGGLIMLAAVVGLYVATATSDAFDAGTFDFRAIVAAVSSGEFAVDPVVMHLLFG 219 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 F +FAIK P++P H WLP++ V+A A +V + IM K+G +G IR+ LPLFP ++ Sbjct: 220 GFMFAFAIKAPLWPLHRWLPDSAVEATPASAVLMMAIMDKVGTFGMIRYCLPLFPDSATL 279 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P I L++I I+Y ++V++ QTD+ +LIAY+SI+H G++ +GIF G G+ M Sbjct: 280 FGPAIITLAVIGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILGIFVMTSQGQSGSTLYM 339 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG+ ++ALF G + R +R I AYGG+ P A ++ +A + LPG + FI Sbjct: 340 VNHGISTAALFLIAGFLVSRRGSRLISAYGGVQKVAPVLAGTFLIAGLATLSLPGLAPFI 399 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG---VSKCEKVQQLKDLSLR 450 EFLV++ F AVLA+ +VLSA+Y LW+Y++++ G S E +++DL R Sbjct: 400 SEFLVLIGTFTRYPVFAVLAASALVLSAIYILWMYQRMMTGPVPPSLSEGENRIRDLVPR 459 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRD 474 E +V P+ L + GIYP P D Sbjct: 460 ELVVVTPLIALLLLLGIYPKPALD 483 >gi|58578582|ref|YP_203328.1| NADH dehydrogenase subunit 4 [Smittium culisetae] gi|57339026|gb|AAW49495.1| NADH dehydrogenase subunit 4 [Smittium culisetae] Length = 484 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 178/465 (38%), Positives = 274/465 (58%), Gaps = 27/465 (5%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL S I L +W +FD EY + + + LG+D IS++ ++LT + Sbjct: 29 LALFSSIIELFIVLLIWILFDYNNP-----EYINTL-MISNIRLGIDSISLIFIILTVLI 82 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P IL+ + +I++ + +MI L+ E + + F SLD+LLFYI FE+SLIPMF +IG++ Sbjct: 83 MPIAILAGF-NIKKKIKTFMILVLLTELIFMLIFTSLDILLFYITFESSLIPMFFLIGLY 141 Query: 156 GGSE-------------RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK 202 G RIYA+YKFFL TF GS+ ML +I+ + T+ D +S Sbjct: 142 GSDSQGMFKGKINKEKTRIYASYKFFLMTFAGSLLMLLSIIKIYTYYGTT---DYLLIST 198 Query: 203 FPF--SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCI 260 F ++Q +W+ FF SFAIK P+ P H WLP AH +AP GS+ LA +MLK+ YG I Sbjct: 199 FNIDNNLQIILWLGFFISFAIKTPLLPVHQWLPLAHTEAPLTGSIILAALMLKLATYGFI 258 Query: 261 RFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS 320 ++ L LFP AS YF P+I L +I++IY+S ++ Q D+KK+IAYSSI HM + + +FS Sbjct: 259 KYSLILFPYASTYFLPLIMTLCIISLIYSSFSTLRQIDMKKIIAYSSIGHMAIIIMALFS 318 Query: 321 GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFT 380 G+ GA+F +HGL S ALF CVG++Y+ HTR I + GL MP + + +F Sbjct: 319 NNYQGITGALFLSFAHGLTSPALFICVGILYNIFHTRIILYFKGLSIYMPLLSSLTFIFI 378 Query: 381 MANMGLPGTSGFIGEFLVIMSVFQ-NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 +ANM P TS FIGEF+ +S+F + A++ + ++L +YS++ Y K FG S Sbjct: 379 LANMSTPLTSNFIGEFISFISIFNYHFPFTAIIFTISIILVPVYSIYFYIKNFFG-SYSI 437 Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 ++ +D+++ + ++ + +F GI+P + + +P+S II Sbjct: 438 YLKSYQDINILDFNLLITLLGFILFTGIFPNSLLNILELPVSMII 482 >gi|301058582|ref|ZP_07199587.1| NADH dehydrogenase subunit M [delta proteobacterium NaphS2] gi|300447314|gb|EFK11074.1| NADH dehydrogenase subunit M [delta proteobacterium NaphS2] Length = 526 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 167/452 (36%), Positives = 275/452 (60%), Gaps = 16/452 (3%) Query: 45 FIFSLFVWSVFDKGRSSFQ-----MIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTP 97 FI + +W+ D GR + ++++ H WI YHL +DGIS+LL+ L L Sbjct: 40 FIAVMALWAD-DAGRFTLAADPVWLLQFDHAWIPQIGARYHLALDGISLLLLALNGLLGF 98 Query: 98 FCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG 157 + +SW+ IQE + L++ + + G FLS+D+LLFY F+E L+P+ +IG+WG Sbjct: 99 LAVATSWQRIQERVGFFHFNLLLVVTAMTGLFLSMDLLLFYCFWEIMLVPLCFLIGIWGH 158 Query: 158 SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII------DLYAMSKFPFSIQYWM 211 R YA +KFFL+T G + ML AI+ + + ++ + L + W+ Sbjct: 159 ERRKYATFKFFLFTQAGGLLMLVAILGLFFVHGRATGVYTFEYERLLGTASLVPDWAPWL 218 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 + FF +FA+K+P FP HTWLP+A+ +APTAGSV LAGI+ K G YG +RFL+PLFP + Sbjct: 219 MMGFFMAFAVKLPAFPLHTWLPDAYTEAPTAGSVLLAGIVSKAGAYGFLRFLVPLFPRVA 278 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 + F+PV L +I I+Y ++++ Q+D+K+L+AYSS++HMG+V +G+F+ ++GA+ Sbjct: 279 ESFSPVAMALGVIGILYGTVLAFAQSDMKRLVAYSSVSHMGFVLLGVFAWNDLALQGAVV 338 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 M++HGL + LF VG ++ RL TRD+ GGL P+ + V ++ +A++GLPG Sbjct: 339 IMIAHGLSAGGLFMLVGDLHRRLGTRDLNRMGGLWTLAPKMSRVGLILALASLGLPGLVN 398 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 F+GEFLV+M V++ +A++A G++L+ +YSLW+ + + G ++ + ++ D RE Sbjct: 399 FVGEFLVLMGVYKVHQGMAMVAVIGLILALVYSLWMIQHIFTGENR--EGWRIADYGGRE 456 Query: 452 RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 ++ I + G+YP P+ D L+ + Sbjct: 457 LTIMAVIVACLIGLGMYPRPLLDEAQPSLTHL 488 >gi|315445441|ref|YP_004078320.1| NADH dehydrogenase subunit M [Mycobacterium sp. Spyr1] gi|315263744|gb|ADU00486.1| NADH dehydrogenase subunit M [Mycobacterium sp. Spyr1] Length = 525 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 174/444 (39%), Positives = 258/444 (58%), Gaps = 24/444 (5%) Query: 55 FDKGRSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF-- 111 FD FQ +E Y WI F + Y LG+DGI++ LVVLT L P I++ W + Sbjct: 54 FDPAGDQFQFVENYRWIPSFGTGYILGIDGIALALVVLTAVLLPLLIIAGWNDAGDRLSW 113 Query: 112 --REYMIAF---LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYK 166 R I F L +E MV+ + +SLD+LLFY+FFEA LIPM+ +IG +GG R AA K Sbjct: 114 GGRSTHIYFALTLAVEGMVLISLVSLDILLFYVFFEAMLIPMYFLIGGFGGEHRGRAAVK 173 Query: 167 FFLYTFFGSIFMLFAIVVMCWEKKTSSIID---------LYAMSKFPFSIQ----YWMWI 213 F LY G + ML A+V + TS D + A+S F++ + ++ Sbjct: 174 FLLYNLVGGLIMLAAVVGLYVATATSDAFDAGTFDFRAIVAAVSSGEFAVDPVVMHLLFG 233 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 F +FAIK P++P H WLP++ V+A A +V + IM K+G +G IR+ LPLFP ++ Sbjct: 234 GFMFAFAIKAPLWPLHRWLPDSAVEATPASAVLMMAIMDKVGTFGMIRYCLPLFPDSATL 293 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P I L++I I+Y ++V++ QTD+ +LIAY+SI+H G++ +GIF G G+ M Sbjct: 294 FGPAIITLAVIGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILGIFVMTSQGQSGSTLYM 353 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG+ ++ALF G + R +R I AYGG+ P A ++ +A + LPG + FI Sbjct: 354 VNHGISTAALFLIAGFLVSRRGSRLISAYGGVQKVAPVLAGTFLIAGLATLSLPGLAPFI 413 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG---VSKCEKVQQLKDLSLR 450 EFLV++ F AVLA+ +VLSA+Y LW+Y++++ G S E +++DL R Sbjct: 414 SEFLVLIGTFTRYPVFAVLAASALVLSAIYILWMYQRMMTGPVPPSLSEGENRIRDLVPR 473 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRD 474 E +V P+ L + GIYP P D Sbjct: 474 ELVVVTPLIALLLLLGIYPKPALD 497 >gi|197253933|ref|YP_002149707.1| NADH dehydrogenase subunit 4 [Stylophora pistillata] gi|169809262|gb|ACA84098.1| NADH dehydrogenase subunit 4 [Stylophora pistillata] Length = 481 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 189/432 (43%), Positives = 273/432 (63%), Gaps = 8/432 (1%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLG-----VDGISILLVVLTTFLTPFCILS 102 +L W FD G S FQ W + F + G VDG+S++ + LTTFL P CIL Sbjct: 41 TLVFWGGFD-GESHFQFFSLVEW-NIFSTLDWGPIVFAVDGVSLVFLFLTTFLIPICILI 98 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 S KSI+ F+E+++ LE ++IG F+ D+LLFY+FFE LIPMF +IG+WG E Sbjct: 99 SQKSIKFLFKEFLLCLFFLEVLLIGVFIVFDLLLFYLFFEGILIPMFFLIGIWGSREEKV 158 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 A +F + +F + + F I++ +++ ++ L K +IQ W + F SFA+K Sbjct: 159 RASFYFFFFYFYRLSLFFFIILFLYQRIGTTDYFLLLNIKLFLNIQKWALVGIFLSFAVK 218 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +P+ PFH WLP AHV+AP AGSV LAGI+LK+GGYG +RF PLFP AS Y++PVI F S Sbjct: 219 LPLIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGLLRFSWPLFPGASLYWSPVIVFFS 278 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 ++A++Y L++ Q D K+L+AYSS+AHMG V +G+F+ + G+ GA+F ML+HG VSSA Sbjct: 279 VVAVVYGGLMTCRQIDFKRLVAYSSVAHMGLVPLGLFTHVIEGLIGALFLMLAHGFVSSA 338 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF V +YDR HTR I Y GL MP + + M++ ++ANMG P + F+GEF +++V Sbjct: 339 LFIGVTFLYDRHHTRLIKYYRGLTLTMPLFVITMLILSLANMGFPLSCNFVGEFFSLLAV 398 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 FQ V + GV+ SA+YSL L+ ++ FG + +DLS RE +++P ++ Sbjct: 399 FQYHYGVGMFVILGVLFSAIYSLSLFNRISFG-GGSNYLLFNRDLSRREIFVIFPFLLII 457 Query: 463 VFFGIYPVPIRD 474 + GI P PI D Sbjct: 458 LGGGIVPFPIID 469 >gi|237809391|ref|YP_002893831.1| proton-translocating NADH-quinone oxidoreductase, chain M [Tolumonas auensis DSM 9187] gi|237501652|gb|ACQ94245.1| proton-translocating NADH-quinone oxidoreductase, chain M [Tolumonas auensis DSM 9187] Length = 506 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 188/480 (39%), Positives = 289/480 (60%), Gaps = 18/480 (3%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD-----KGRSSFQMI 65 LPF+G F+ + G +AL ++ + +L +W +D G+ S+ + Sbjct: 8 LLPFIGGFLCWLVEFTHKGTNIPRWIALITMSLQLLLALNLWHAYDYSLVLPGQGSWTLD 67 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 WI F S HL +DGIS+L+V LT L ++ SW IQ+ + + L + Sbjct: 68 YQLPWIPRFGISVHLALDGISLLMVALTGLLGILAVVCSWNEIQDRVGFFHLNLLWILGG 127 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFML 179 VIG FLSLD+ LF+ F+E L+PM+ +I +WG G RIYAA KFFLYT + ML Sbjct: 128 VIGVFLSLDLFLFFFFWEMMLVPMYFLIALWGHSGSDGRTRIYAATKFFLYTQASGLLML 187 Query: 180 FAI---VVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 +I V + ++ + D + S +++ + + FF +FA+K+P+ P H WLP+ Sbjct: 188 LSILALVFIHYQATGTFSFDYTVLLNTSMSSEVEFMLMLGFFIAFAVKMPLVPLHGWLPD 247 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH QAPTAGSV LAGI+LK YG +RF +PLFP A+ FAP+ L LI IIY ++++ Sbjct: 248 AHSQAPTAGSVDLAGILLKTAAYGLLRFGIPLFPNAAAEFAPIAMSLGLIGIIYGAVLAF 307 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTDIK+L+AY+S++HMG+V I +++G + ++GA+ QM++HGL ++ LF G +Y+RL Sbjct: 308 SQTDIKRLVAYTSVSHMGFVVIALYAGTSTAIQGAIVQMVAHGLSAAGLFIMCGQLYERL 367 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 HTRD+ GGL H + VM+ F++A++GLPGT FIGEF++++ F + + +A+ Sbjct: 368 HTRDLREMGGLWHRLRYLPGVMLFFSVASLGLPGTGNFIGEFMILLGSFPSVPVIVTIAT 427 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 G+VL+++YSL + ++ FG K LK LS RE ++ + L + GIYP P+ D Sbjct: 428 VGLVLASVYSLVMLQRACFGQGKVNT--PLKALSAREFAILLLLVALLIGLGIYPQPVLD 485 >gi|313498020|gb|ADR59386.1| NuoM [Pseudomonas putida BIRD-1] Length = 510 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 184/435 (42%), Positives = 277/435 (63%), Gaps = 17/435 (3%) Query: 65 IEYY-HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +EY WI F S HL +DG+S+L+++LT L +L SWK IQ + + + + + Sbjct: 66 LEYKVEWIKRFGISIHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRHVGFFHLNLMWIL 125 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYKFFLYTFFGSI 176 V+G FL+LD+ LF+ F+E L+PM+ +I +WG S RIYAA KFF++T + Sbjct: 126 GGVVGVFLALDLFLFFFFWEMMLVPMYFLIALWGHSSADGKKTRIYAATKFFIFTQASGL 185 Query: 177 FMLFAIV-VMCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 ML AI+ ++ T+ ++ DL ++ P ++Y + + FF +FA+K+P+ PFH+ Sbjct: 186 IMLVAILGLVLVNYNTTGVLTFNYSDLLK-AELPAGVEYVLMLGFFIAFAVKLPVVPFHS 244 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L LI I Y + Sbjct: 245 WLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTLGLIGIFYGA 304 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++GA+ QML+HGL ++ALF G + Sbjct: 305 FLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGAVIQMLAHGLSAAALFILSGQL 364 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+RLHTRD+ GGL H + + + F A++GLPGT F+GEFL+++ F + + Sbjct: 365 YERLHTRDMRQMGGLWHRIAYLPAISLFFAAASLGLPGTGNFVGEFLILIGSFVHVPWIT 424 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 V+A+ G+V ++YSL + + FG +K + V L + RE MV +AVL + G+YP Sbjct: 425 VIATTGLVFGSVYSLIMIHRAYFGPAKTDTV--LAGMDGRELIMVLGLAVLLILLGVYPQ 482 Query: 471 PIRDTFSVPLSSIIE 485 P DT + +S + + Sbjct: 483 PFLDTSAATMSGVQQ 497 >gi|91773265|ref|YP_565957.1| F420H2 dehydrogenase subunit M [Methanococcoides burtonii DSM 6242] gi|91712280|gb|ABE52207.1| F420H2 dehydrogenase subunit M [Methanococcoides burtonii DSM 6242] Length = 495 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 175/483 (36%), Positives = 280/483 (57%), Gaps = 18/483 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LP LS++ +P L V F+ R S AL + + + +++++ FD ++ Sbjct: 2 LPILSLIVLIPILFSAVTFFTKTKEQARLS----ALVGTLLTLVLTMYMYFSFDSTSAAM 57 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q E +WI +YHLGVDG+S+ L++L + P I+ +W ++ + L + Sbjct: 58 QFEEAANWIPSLGITYHLGVDGVSMPLILLNAIVIPLLIIYTWNDVRAAPNRFYALILAM 117 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 + VIG F+SLD LFY+F+E +L+P+F ++ +WGG+ + +AA KFF+YT S+ ML Sbjct: 118 QGAVIGVFISLDFFLFYVFWELTLVPLFFMVNIWGGANKKHAAIKFFIYTHVASLVMLLG 177 Query: 182 IVVM---CWEKKTSSIIDL-YAMSKFPFS----IQYWMWIAFFCSFAIKIPMFPFHTWLP 233 I + W +D+ Y +S+F F + +++A F +K P+ PFH+WLP Sbjct: 178 IFGLYFNAWSLSGVPNMDMTYLISQFQFLESEIARDLIFLALLFGFIVKTPVVPFHSWLP 237 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS--QYFAPVIFFLSLIAIIYASL 291 +A+ +APTAGSV I+LK+GGYG R +LP+ P + ++ L I+IIY + Sbjct: 238 DAYSEAPTAGSVLF--ILLKIGGYGLFRVMLPMLPFTATPSLMITIMGALGAISIIYGAF 295 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 +++ Q D+K++IAYSSI+HMGYVT+G + + GAMFQ SHGL+ S +F GVI Sbjct: 296 LALAQKDLKRMIAYSSISHMGYVTLGCAGLVSLSISGAMFQQFSHGLIMSIMFMSCGVIQ 355 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 + T I GGL MP+ V+M++ MA++GLPG +GFI EFLV+ F N + Sbjct: 356 TKTGTSIINNLGGLAQRMPKLTVIMVLGFMASLGLPGLTGFIAEFLVLTFSFINVPIYVI 415 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +A +V++A Y LW ++ +FG EK+ + D+S + + IA+L ++FG+ P P Sbjct: 416 IALLAIVITAAYHLWALQRAMFGPFN-EKLGDIVDISSFQTFSMGIIALLVLYFGLNPSP 474 Query: 472 IRD 474 + D Sbjct: 475 VLD 477 >gi|239905970|ref|YP_002952709.1| NADH-quinone oxidoreductase chain M [Desulfovibrio magneticus RS-1] gi|239795834|dbj|BAH74823.1| NADH-quinone oxidoreductase chain M [Desulfovibrio magneticus RS-1] Length = 493 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 179/490 (36%), Positives = 271/490 (55%), Gaps = 15/490 (3%) Query: 2 NLPFLSIVTFLPFLGVFVI--LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 LP+LS++ F P + V+ L C RR ALG + +F G Sbjct: 3 QLPWLSLIIFWPLVAACVMPALRGDAAAC-RRFAVLAALG----ELALCALIAGLFAAGS 57 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 +++E WI F Y L +DG+S++ VVLT + C+L+S +E Y Sbjct: 58 FGPELVEDAAWIPSFGIRYSLSLDGLSLIFVVLTALIGLCCMLASRHDDRERPALYHGLI 117 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + V G FL+ D+ LF +F+EA LIP+F +IGV+G +++ A KFFL++ G + M Sbjct: 118 LASLTTVQGIFLASDVFLFALFWEAQLIPVFFLIGVFGHGDKLRVAMKFFLFSATGGLLM 177 Query: 179 LFAIV---VMCWEKKTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 A++ V+ L A+++ P ++ W++ AF SFAIKIP+ P H WLP Sbjct: 178 FLAVIALGVLSANAPDGPNFALEALTRLDIPQNVGRWLFAAFVLSFAIKIPLVPVHMWLP 237 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH +APTAGS+ LAG++LK GGY IRF LPLFP A+ FAP + L L+ + YAS V+ Sbjct: 238 DAHTEAPTAGSLILAGLLLKTGGYALIRFALPLFPEAAHAFAPALTVLGLVGLFYASAVA 297 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + Q D+K+LIAYSSI HMG + SG + + GA+ M+SH L S LF G I +R Sbjct: 298 VAQEDVKRLIAYSSIGHMGLAVAAMVSGSRLALGGAVLLMVSHALTSGGLFSLAGAIGER 357 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 L +R GG+ + P + + +A+ LPG SGF+GE +++ +F+ + A LA Sbjct: 358 LGSRRFDILGGIWNKAPHFGAAFLFCVLASAALPGLSGFVGEAMIVFGLFKVNVLAAGLA 417 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 G+ + +Y L L R V++G + DL RE ++ +AV V+ G++P P+ Sbjct: 418 VAGMAATLVYLLRLARDVLYGPPR--SAVPFPDLDAREAVLLSLLAVGIVWLGLFPGPVL 475 Query: 474 DTFSVPLSSI 483 + PL++I Sbjct: 476 GLAAEPLNAI 485 >gi|239980140|ref|ZP_04702664.1| NADH dehydrogenase subunit M [Streptomyces albus J1074] gi|291451995|ref|ZP_06591385.1| NADH dehydrogenase subunit M [Streptomyces albus J1074] gi|291354944|gb|EFE81846.1| NADH dehydrogenase subunit M [Streptomyces albus J1074] Length = 533 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 184/529 (34%), Positives = 290/529 (54%), Gaps = 35/529 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILF-----SSYLGCGRRSFFG---VALGISTINFIFSLFVW 52 M+ P L+ LP +G V S G G R VAL S F+ ++ V Sbjct: 1 MSFPLLTATAALPAIGAIVTAAVPAARSRSDGDGPRGSGTAKVVALLFSVATFVLAMTVL 60 Query: 53 SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--E 109 F+ G + +Q+ E Y WI F Y LGVDGI + L+ LT L PF IL+ W+ E Sbjct: 61 VRFEPGGARYQLTESYDWIPAFGVRYELGVDGIGVALIALTALLIPFVILAGWRDADHLE 120 Query: 110 NFRE-------YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG------ 156 N + + L++E+MVI +F + D+ LFY+FFEA LIPM+ +IG +G Sbjct: 121 NSSKRWRPTQGFFALILMVEAMVILSFEATDVFLFYLFFEAMLIPMYFLIGGFGDRASGT 180 Query: 157 -----GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS-----KFPFS 206 ++R YAA KF LY G + ML A++ + T S+ ++ + S Sbjct: 181 DEAQAATQRSYAAVKFLLYNLAGGLIMLAAVIGLYSVAGTFSLSEIAQARADGTLEMAAS 240 Query: 207 IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 + W+++ FF +FAIK P++P HTWLPNA +A +V + ++ K+G + +RF L L Sbjct: 241 TEKWLFLGFFFAFAIKAPLWPLHTWLPNAMGEATAPVAVLITAVVDKVGTFAMLRFCLGL 300 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 FP AS++ PV+ L+L++IIY +L+++ Q DIK+L+AY+SI+H G++ +GIF+ G Sbjct: 301 FPEASKWATPVVLVLALVSIIYGALLAVGQRDIKRLVAYASISHFGFIILGIFAMTSQGQ 360 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 GA M++HGL ++AL G + R +R I YGG+ P A +V ++A + L Sbjct: 361 SGATLYMVNHGLSTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLVGSLATLSL 420 Query: 387 PGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD 446 PG + F+ EFLV++ F + ++A+ G+VL ALY+L LY++ + G K V ++ D Sbjct: 421 PGLAPFVSEFLVLVGTFTRYPVIGIIATVGIVLGALYTLVLYQRTMTGPVK-PSVAKMPD 479 Query: 447 LSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 L +RE ++ P+ L +F G+YP P+ + + + + K D Sbjct: 480 LKVRELAVIGPLIALLLFLGVYPKPLTELVDPAVGHTLSDVQQKDPKPD 528 >gi|60499211|gb|AAX21834.1| NADH dehydrogenase subunit 4 [Fusarium oxysporum] Length = 507 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 178/482 (36%), Positives = 294/482 (60%), Gaps = 5/482 (1%) Query: 6 LSIVTFLPFLGVFVIL-FSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS + +P LG V+ SY +AL S IN I SL ++ +F+ + FQ Sbjct: 25 LSSLITIPVLGTIVVASIGSYKKNSELYTKTIALTSSIINLIISLVMFILFNNSSNQFQY 84 Query: 65 IEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 ++ ++ + F Y LGVDGISI ++LTT + P +LS+W SI+EN + Y+I L+LE++ Sbjct: 85 VQEHYNVQLFDIY-LGVDGISIYFILLTTIIMPIALLSNWDSIKENVKSYLIIMLLLETL 143 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++ F++LD++ FYIFFE+ L P+F++IG++G ++ A+Y FLYT +GS+F+L +I+ Sbjct: 144 LLAVFMTLDIMSFYIFFESILPPLFILIGLYGSDNKVSASYYLFLYTLWGSLFLLLSILS 203 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 ++ L+ ++ F + Q +++I F SFA+K P + WL AHV++P GS Sbjct: 204 TSSIMGSTDFDTLFKLN-FEYKTQIFLFIGIFISFAVKTPTIFLNNWLLKAHVESPLGGS 262 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+ YG R +LP+ P AS + V+F +++I IIYAS ++ TD+K+LIA Sbjct: 263 IVLAAIVLKLSLYGVFRLILPILPKASLDYTFVVFTIAVITIIYASFSTLRTTDVKELIA 322 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYG 363 YSS+ H IG+FS G+EG++ L+HG VSS LF C G++YDR TR I+ Y Sbjct: 323 YSSVCHASVYLIGVFSNTIQGLEGSIILGLAHGFVSSGLFICAGGILYDRTGTRLIYFYR 382 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ MP +A++ + + N G P T F+GEF+ + S+ + + V A VV SA Y Sbjct: 383 GITQLMPIFAILFFILALGNCGAPLTLNFVGEFMSLYSIIERLPVLGVFACSSVVFSAAY 442 Query: 424 SLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 +++++ ++ FG S +++ + D++ RE +++ + + TV G+YP I + ++S Sbjct: 443 TIYMFNRISFGGSFTRFLEESIYDVNKREFILLFILVLFTVILGVYPSLILNVLDYSMNS 502 Query: 483 II 484 +I Sbjct: 503 LI 504 >gi|225871974|ref|YP_002753428.1| NADH dehydrogenase I, M subunit [Acidobacterium capsulatum ATCC 51196] gi|225791920|gb|ACO32010.1| NADH dehydrogenase I, M subunit [Acidobacterium capsulatum ATCC 51196] Length = 505 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 184/491 (37%), Positives = 295/491 (60%), Gaps = 14/491 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 +N LS++TFLP G V+ G R AL +S F+ +L + + F GR Sbjct: 2 LNDSILSLMTFLPAAGAVVVALLPRKG---RLIQWWALLVSLATFLLTLHLPAHFQYGRP 58 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ WI + +YH+GVDG+S+ LVVLT FL P +L SWK+I+ +E+ FL Sbjct: 59 GFQFEVNIPWILHPAINYHIGVDGLSMWLVVLTGFLAPIGVLVSWKAIETRTKEFYFLFL 118 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + ++ +IG F+SLD+ L+Y F+E +L+PM ++I ++G S AA KFFLYTF S L Sbjct: 119 LQQTAMIGVFISLDLFLYYGFWELTLVPMAILIAMFGRSRGPRAAIKFFLYTFIPSALFL 178 Query: 180 FAIVVMCWEKKTSSIIDLYA-MSKFPFSIQYWMWI--AFFCSFAIKIPMFPFHTWLPNAH 236 AI+ + T L A ++ FS Q +W+ AF +FA+K+P+FP H WL + Sbjct: 179 VAILWLYARTGTFDYEKLQASIATGGFSPQALIWVSLAFLLAFAVKVPVFPLHGWLGDGI 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +APTA ++ +AG K+G Y +RF L LFP S+ FAP + L++I +IY +LV++VQ Sbjct: 239 AEAPTAMAMVIAG---KLGLYSILRFNLGLFPEQSREFAPWMIALAVIGLIYGALVALVQ 295 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+K+L+AYS ++ + + T+GIF +G++GA++Q+++ G+ AL +G++Y+R T Sbjct: 296 KDMKRLVAYSILSQLSFCTLGIFCFSLTGLDGAVYQIINEGVSGGALLVLLGILYERYGT 355 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 +I YGGL +P A + ++ T++ +GLP +GF+GEF+V+ F + V+A+ G Sbjct: 356 FEIAQYGGLSKRLPHMATLYVITTLSLIGLPILNGFVGEFMVLSGSFPGHHGWVVIATLG 415 Query: 417 VVLSALYSLWLYRKVVFG-VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI---YPVPI 472 V+LSA Y LW+ ++V +G S + + D++ RE V+P+ +L V G+ Y + Sbjct: 416 VILSASYMLWMIQRVFYGPESALVQGRATFDVTGRELITVWPMILLMVVMGVASPYWIKA 475 Query: 473 RDTFSVPLSSI 483 D PL+++ Sbjct: 476 IDGGMKPLANV 486 >gi|167034698|ref|YP_001669929.1| NADH dehydrogenase subunit M [Pseudomonas putida GB-1] gi|166861186|gb|ABY99593.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pseudomonas putida GB-1] Length = 510 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 184/435 (42%), Positives = 277/435 (63%), Gaps = 17/435 (3%) Query: 65 IEYY-HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +EY WI F S HL +DG+S+L+++LT L +L SWK IQ + + + + + Sbjct: 66 LEYKVEWIKRFGISIHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRHVGFFHLNLMWIL 125 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYKFFLYTFFGSI 176 V+G FL+LD+ LF+ F+E L+PM+ +I +WG S RIYAA KFF++T + Sbjct: 126 GGVVGVFLALDLFLFFFFWEMMLVPMYFLIALWGHSSADGKKTRIYAATKFFIFTQASGL 185 Query: 177 FMLFAIV-VMCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 ML AI+ ++ T+ ++ DL ++ P ++Y + + FF +FA+K+P+ PFH+ Sbjct: 186 IMLVAILGLVLVNYNTTGVLTFNYSDLLK-AELPAGVEYVLMLGFFIAFAVKLPVVPFHS 244 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L LI I Y + Sbjct: 245 WLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTLGLIGIFYGA 304 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++GA+ QML+HGL ++ALF G + Sbjct: 305 FLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGAVIQMLAHGLSAAALFILSGQL 364 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+RLHTRD+ GGL H + + + F A++GLPGT F+GEFL+++ F + + Sbjct: 365 YERLHTRDMRQMGGLWHRIAYLPAISLFFAAASLGLPGTGNFVGEFLILIGSFVHVPWIT 424 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 V+A+ G+V ++YSL + + FG +K + V L + RE MV +AVL + G+YP Sbjct: 425 VIATTGLVFGSVYSLIMIHRAYFGPAKSDTV--LAGMDGRELIMVLGLAVLLILLGVYPQ 482 Query: 471 PIRDTFSVPLSSIIE 485 P DT + +S + + Sbjct: 483 PFLDTSAATMSGVQQ 497 >gi|75908525|ref|YP_322821.1| NAD(P)H-quinone oxidoreductase subunit 4 [Anabaena variabilis ATCC 29413] gi|123609527|sp|Q3MAR0|NU4C2_ANAVT RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 2; AltName: Full=NAD(P)H dehydrogenase I, chain 4 2; AltName: Full=NDH-1, chain 4 2 gi|75702250|gb|ABA21926.1| NADH dehydrogenase subunit M [Anabaena variabilis ATCC 29413] Length = 561 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 193/533 (36%), Positives = 292/533 (54%), Gaps = 50/533 (9%) Query: 4 PFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRSS 61 P+L+ + LP + F+ L G R + ALG+ +F+ + W +D ++ Sbjct: 7 PWLTAIILLPLVASAFIPLLPDKEGKLVRWY---ALGVGIADFVLMCYTFWHHYDASSAT 63 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL- 119 FQ++E Y W+ S+ + VDGIS+ LV+L F+T +L++W Q N + + FL Sbjct: 64 FQLVEKYDWVPQIGFSWAVSVDGISMPLVLLAGFVTTLSMLAAW---QVNLKPRLFYFLM 120 Query: 120 -VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 VL S IG F++ D+LLF+I +E L+P+++++ +WGG +R YAA KF LYT SIF+ Sbjct: 121 LVLYSAQIGVFVAQDLLLFFIMWELELVPVYLLVSIWGGQKRRYAATKFLLYTAAASIFI 180 Query: 179 LFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A + M + T I++L A +P +++ ++ +F +K+ +FP HTWLP+AH Sbjct: 181 LIAGLAMALHGDNTTFDIVELGA-KNYPLALELLLYAGLLIAFGVKLAIFPLHTWLPDAH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A S+ LAG++LKMGGYG IR L L P A YFAPV+ L +I IIY L S Q Sbjct: 240 GEASAPVSMILAGVLLKMGGYGLIRLNLELLPDAHIYFAPVLATLGVINIIYGGLNSFAQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 T +K+ +AYSS++HMG+V +GI S GV GAM QMLSHGL+++ LFF GV YDR HT Sbjct: 300 THMKRRLAYSSVSHMGFVLLGIASFTDVGVSGAMLQMLSHGLIAAVLFFLAGVTYDRTHT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVA 410 + GG+ MP+ + TMA++ LPG SGF+ E V + V + TV Sbjct: 360 MAMDNLGGIGQAMPKVFALFTAGTMASLALPGMSGFVSELKVFIGVTTSDIYSPTFCTVM 419 Query: 411 V-LASFGVVLSALYSLWLYRKVVFGV--------------------SKCEKVQQL----- 444 V LA+ GV+L+ +Y L + R+V +G + C L Sbjct: 420 VFLAAVGVILTPIYLLSMLRQVFYGTGAELSCNINNGAYENQEDEGTACFGTDCLLPGEA 479 Query: 445 --KDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 +D S+RE + VL + G+YP + V ++ N ++ Y+ Sbjct: 480 VYRDASIREVFIAASFLVLIIGVGVYPKIATQLYDV--KTVAVNTQVRQSYTQ 530 >gi|332669461|ref|YP_004452469.1| proton-translocating NADH-quinone oxidoreductase subunit M [Cellulomonas fimi ATCC 484] gi|332338499|gb|AEE45082.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cellulomonas fimi ATCC 484] Length = 512 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 171/497 (34%), Positives = 289/497 (58%), Gaps = 20/497 (4%) Query: 4 PFLSIVTFLPFLGVFVI--LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS- 60 P+L+ + LP LG + L + + G R VALG + + + FD + Sbjct: 6 PWLTALVVLPVLGAVALWALPAGWRGRTR----AVALGFALAELLLGVGALLAFDTADAA 61 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWK------SIQENFRE 113 + Q++E + WI SY +GVDG+ + LV+++ L P +L++W+ + + R+ Sbjct: 62 THQLLETHSWIPALGVSYAVGVDGVGLALVLMSVLLVPLVVLAAWREQGSVDAPTDRLRQ 121 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y+ L+LE+ ++ F + D+ LFY+ FEA LIP++ +IG++GG +R YAA KF LY+ Sbjct: 122 YLALVLLLEAFIVVVFAARDVFLFYVVFEAMLIPVYFMIGMFGGEQRRYAAVKFLLYSLA 181 Query: 174 GSIFMLFAIVVMCWEKKTSS----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 G + ML ++ + + +L + P ++Q W+++AFF +FAIK PMFP H Sbjct: 182 GGLIMLVGVIALYLNGPRGADGFLTANLTGLELDP-TLQKWLFLAFFVAFAIKAPMFPVH 240 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+A QAP S L G++ K+G +G + LPLFP AS++ APV+ L++++I+Y Sbjct: 241 TWLPDAAQQAPAGTSTLLVGVLDKVGTFGMLTLCLPLFPDASRWAAPVVIVLAVVSILYG 300 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 +L+++ Q D+ +L+AY+S++H G++ +GIF+ + + G+ F M++HGL + LF VG Sbjct: 301 ALLAIGQKDLMRLVAYTSVSHFGFIVLGIFAFSATSIAGSSFYMVNHGLSTGGLFLLVGF 360 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + R ++ I +GGL +P A +V ++ + LPG S F+ EFLVI+ F Sbjct: 361 LAARRGSQQIADFGGLQKVVPVLAGTFLVVGLSALSLPGLSTFVSEFLVIVGTFTRHPAA 420 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A++++ GVVL+A+Y LW Y++V G + E ++ DL RER +V P+ + G+ P Sbjct: 421 AIVSTLGVVLAAIYVLWTYQRVFTGPVRDE-LRATPDLGTRERWVVGPLIAAMLVLGVVP 479 Query: 470 VPIRDTFSVPLSSIIEN 486 P D P + ++ Sbjct: 480 GPALDLVRPPADTTLQQ 496 >gi|82702153|ref|YP_411719.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosospira multiformis ATCC 25196] gi|82410218|gb|ABB74327.1| NADH dehydrogenase subunit M [Nitrosospira multiformis ATCC 25196] Length = 500 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 183/489 (37%), Positives = 287/489 (58%), Gaps = 17/489 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-----SVFDKGRS 60 L+ + F+P G + + G + VAL + I F+ ++ +W ++ Sbjct: 3 LAALIFIPISGGLLAWMADRWQPGAAKW--VALVTAGIEFVLTMGLWLQSASAMALPAHG 60 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + + WI F S+HL VDG S++LVVLT FL + SW IQ+ + L Sbjct: 61 GWLVETRAEWIPRFGVSFHLAVDGTSLILVVLTAFLGIVSVACSWTEIQKRVGFFYFNLL 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + IG FL+LD+ LF+ F+E L+PM+ +IG+WG R YA+ KFF++ +FML Sbjct: 121 WTVAGAIGVFLALDLFLFFFFWELMLVPMYFLIGIWGHENRQYASIKFFIFAQGSGMFML 180 Query: 180 FAIVVMCWEKKTSSII------DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 AI+ + + + + DL + P S + W+ + FF +FA+K P+ PFHTWLP Sbjct: 181 VAILALVFVHYRGTGVLTFDYFDLLNATLSP-STELWIMLGFFIAFAVKTPIVPFHTWLP 239 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH +APTAGSV LAG++LK G YG +RF++PLFP A+ YFAPV L ++Y + ++ Sbjct: 240 DAHTEAPTAGSVILAGVLLKTGAYGLLRFIVPLFPEAAAYFAPVAMVLGATGVLYGAFLA 299 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 QTD K+L+AY+S++H+G+ +GIF+ + GA+ QM++HG+ + ALF G++ +R Sbjct: 300 FAQTDFKRLVAYTSVSHLGFAVLGIFAWNPWSLGGAVMQMIAHGISTGALFVIAGILQER 359 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 HTRD+ + GL MPR A + + F +A +GLPG F+GEFLV+M + +S+ +A A Sbjct: 360 THTRDMQRFEGLWSVMPRLAAMGLFFAIAALGLPGMGNFVGEFLVLMGLSSSSSVLASAA 419 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 + V S +Y+L L +K G +K QL DLS RE ++ +A +T++ G+YP P+ Sbjct: 420 TVVFVASVVYALALVQKTFHGENKHG--WQLHDLSGREMATLFSMAAITLWLGLYPQPVL 477 Query: 474 DTFSVPLSS 482 + P +S Sbjct: 478 NAAPNPANS 486 >gi|156122200|gb|ABU50160.1| NADH dehydrogenase subunit 4 [Cordyceps bassiana] Length = 498 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 179/481 (37%), Positives = 290/481 (60%), Gaps = 6/481 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + +P +G ++ SS S +AL S IN SL ++ +F + FQ I Sbjct: 19 LSSLLTIPLIGTIIV--SSLDSYKNTSIKSIALITSIINLTPSLIIFILFKSSTNQFQYI 76 Query: 66 EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 + ++ + F Y LG+DGISI ++LTT + P +LS+W SI+EN + Y+I L+LE+++ Sbjct: 77 QEHYNVQLFDIY-LGIDGISIYFILLTTIIMPIALLSNWDSIKENVKSYLIIMLLLETLL 135 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM 185 + F++LD++LFYIFFE+ L P+F++IG++G ++ A+Y FLYT +GS+F+L +I+ + Sbjct: 136 LAVFMALDIMLFYIFFESILPPLFILIGIFGSDNKVNASYYLFLYTLWGSLFLLLSILSI 195 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 ++ L+ ++ F ++ Q +++I F +FA+K P + WL AHV++P GS+ Sbjct: 196 SSIMGSTDFDTLFKLN-FEYTTQVFLFIGIFIAFAVKTPTIFLNNWLLKAHVESPLGGSI 254 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LAGI+LK+ YG R +LP+ P AS + VI+ +++I IIYAS ++ TDIK+LIAY Sbjct: 255 VLAGIVLKLSLYGIFRLILPMLPKASLDYTFVIYTIAVITIIYASFSTLRTTDIKELIAY 314 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGG 364 SS+ H IG FS G+EG++ L+HG VSS LF C GV+YDR TR IF Y G Sbjct: 315 SSVCHAAVYLIGAFSNTIQGLEGSIILGLAHGFVSSGLFICAGGVLYDRTGTRSIFFYRG 374 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + MP +A++ + + N G P T FIGEF+ + + + + V A +V SA Y+ Sbjct: 375 VAQLMPIFAILFFILALGNCGAPLTLNFIGEFMSLYGIIERLPVLGVFACSSIVFSAAYT 434 Query: 425 LWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 +++ + FG S + + D++ RE +++ + TV GIYP I + ++++ Sbjct: 435 IYMSNRTAFGGSFTRFSDESVYDVTKREFILLFILVAFTVILGIYPSIILNVLDYSMNNL 494 Query: 484 I 484 I Sbjct: 495 I 495 >gi|282897999|ref|ZP_06305994.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Raphidiopsis brookii D9] gi|281197143|gb|EFA72044.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Raphidiopsis brookii D9] Length = 546 Score = 299 bits (766), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 175/445 (39%), Positives = 266/445 (59%), Gaps = 16/445 (3%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N P+L+ + LP L +I L G R + ALG++ +F + W+ ++ Sbjct: 5 NFPWLTTIIVLPLLAACLIPLIPDKDGKTVRWY---ALGVAIADFALICYAFWTHYNSVD 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + FQ++E Y+W+ + +GVDGIS LV+L F+T + S+W+ + R + Sbjct: 62 TGFQLVESYNWMPTLGLKWAVGVDGISAPLVLLAGFVTTLSMFSAWQ-VDRRPRLFYSLM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LVL + IG F++ D+LLF+I +E LIP+++++ +WGG +R YAA KF +YT SIF+ Sbjct: 121 LVLYAAQIGVFVAKDLLLFFIMWEVELIPVYLLVSIWGGQKRRYAATKFIIYTAAASIFI 180 Query: 179 LFAIVVMCWEKKTSSIIDL--YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A + M + D+ A +P ++Q ++ F +F +K+ +FP HTWLP+AH Sbjct: 181 LIAALAMGLYGGANLSFDVSDLASKNYPLTLQLLLYAGLFIAFGVKLAIFPLHTWLPDAH 240 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + S+ LAG++LKMGGYG IR + L P A YFAPVI L ++ IIY +L S Q Sbjct: 241 GEASSPVSMILAGVLLKMGGYGLIRLNMELLPDAHIYFAPVIAVLGVVNIIYGALNSFAQ 300 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 T++K+ +A+SSI+HMG+V +G+ S G+ GAM QMLSHGL++S LFF GV YDR HT Sbjct: 301 TNMKRRLAFSSISHMGFVLLGLASFTDLGMNGAMLQMLSHGLIASVLFFLAGVTYDRTHT 360 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVA 410 + GG+ MP + + MA++ LPG SGF+GE V + V + TV Sbjct: 361 MVMKDMGGVGQAMPIVFALFTMGAMASLALPGMSGFVGELSVFVGVATSDVYTSTFCTVT 420 Query: 411 V-LASFGVVLSALYSLWLYRKVVFG 434 V LA+ GV+L+ +Y L + R+V +G Sbjct: 421 VFLAAVGVILTPIYLLSMLRQVFYG 445 >gi|74310555|ref|YP_313639.1| NADH dehydrogenase subunit 4 [Epidermophyton floccosum] gi|58429683|gb|AAW78245.1| NADH dehydrogenase subunit 4 [Epidermophyton floccosum] Length = 487 Score = 299 bits (766), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 192/485 (39%), Positives = 294/485 (60%), Gaps = 17/485 (3%) Query: 12 LPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI--EYYH 69 +P +G+F I+FS+ + L IN I SL ++ +FD FQ I E + Sbjct: 10 IPLIGIFFIIFSTTYQYSNNQIKTLGLITLIINLIISLIIFILFDFSSKQFQYIQLEEIY 69 Query: 70 WIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENFREYMIAFLVLESMVIGA 128 I YF Y LG+DGISI ++LTT + P ++++W SI+ +N ++I L+LE++++ Sbjct: 70 KISYFDLY-LGIDGISIYFLLLTTMIMPISLVANWNSIESKNVLSFVIIILLLETLLLAV 128 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 FL LD+LLFYIFFE+ L P+F++IG++G S+++ A++ FLYT GS+FML +I+ M Sbjct: 129 FLVLDILLFYIFFESILPPLFLLIGLFGSSDKVRASFYLFLYTLLGSLFMLLSIITM--- 185 Query: 189 KKTSSII---DLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 SSI+ D A+SK F + Q +++ F SFA+K P +TWL AHV++P AG Sbjct: 186 ---SSIMGGTDFDALSKANFGYVTQLFLFYGIFISFAVKTPTIFLNTWLLKAHVESPLAG 242 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LAGI+LK+ YG R +LPL P AS + +++ + +I I+YAS ++ DIK+LI Sbjct: 243 SIILAGIVLKLSLYGIFRLILPLLPKASMDYTYIVYVIGVITILYASFSTLRTIDIKELI 302 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAY 362 AYSS++H + FS G+EGA+ L+HG VSS LF CV G++YDR TR I Y Sbjct: 303 AYSSVSHAAVYLLSAFSNTIQGIEGAIALGLAHGFVSSGLFICVGGILYDRSSTRLITYY 362 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G+ MP + ++ + ++ N G P T FIGEF+ + +F+ + + VLAS +V SA Sbjct: 363 RGMAQLMPIFCILFYILSLGNCGSPLTLNFIGEFMSLYGIFERISVLGVLASTSIVFSAA 422 Query: 423 YSLWLYRKVVFGVSKCEK-VQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+++++ ++ FG +KDLS RE ++ + + V FGIYP I D +S Sbjct: 423 YTIFMFNRIAFGGQFSSYFFNYVKDLSKREFILLISLVIPAVLFGIYPAVILDGLHYSVS 482 Query: 482 SIIEN 486 S+I N Sbjct: 483 SLIYN 487 >gi|20090364|ref|NP_616439.1| F(420)H(2) dehydrogenase, subunit FpoM [Methanosarcina acetivorans C2A] gi|19915369|gb|AAM04919.1| F(420)H(2) dehydrogenase, subunit FpoM [Methanosarcina acetivorans C2A] Length = 495 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 176/486 (36%), Positives = 280/486 (57%), Gaps = 24/486 (4%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LP S++ +P + V F+ + G+ L S + +L+ + FD ++ Sbjct: 2 LPVASLLILVPLIFAAVTFFTKT----KDQAAGLGLIGSLVTLGLTLYAYLNFDSSTAAM 57 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q E W+ + +Y +G+DGIS+ L++L + P IL SWK +E + L + Sbjct: 58 QFYESVPWVPFLGINYSVGIDGISMPLILLNAIVIPLLILFSWKEDREAPNRFYGLILTM 117 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ++ VIG F++LD ++FYIF+E +L+P+F I+ +WGG +R +A+YKFF+YT S+ ML Sbjct: 118 QAAVIGVFVALDFVVFYIFWELTLVPLFFIVNIWGGEKRAHASYKFFIYTHVASLVMLLG 177 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYW--------MWIAFFCSFAIKIPMFPFHTWLP 233 I + + + I + + + Q++ +++A F K+P FPFH+WLP Sbjct: 178 IFGLFYTALHQTGIPTFDIRELIAQFQFFESGLMRDAIFLAILFGFLAKLPTFPFHSWLP 237 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAP--VIFFLSLI---AIIY 288 +A+ +APTAGSV I+LK+GGYG R LP+ P P +I L L+ +I+Y Sbjct: 238 DAYTEAPTAGSVLF--ILLKIGGYGLFRISLPMLPNTGN---PNLMIMMLGLLGSFSIVY 292 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 +L+++ Q D+K++IAYSS++HMG+VT+G + V GAMFQ SHGL+ S +F G Sbjct: 293 GALLALRQKDLKRMIAYSSLSHMGFVTLGSAGLVALSVSGAMFQQFSHGLIMSIMFMSAG 352 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 I TR I GGL MP AV+MMV MA++GLPG +GFI EFLV+ F N Sbjct: 353 AIQTTTGTRIINDLGGLARKMPMLAVLMMVGFMASLGLPGLTGFIAEFLVLTFSFVNLPG 412 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 +LA +V++A Y LW ++ +FGV EK+ ++D++ + + IA+L ++FG+ Sbjct: 413 FVLLALLAIVITAGYHLWAMQRAMFGVYN-EKLGSIRDINSMQVFSMGVIALLVLYFGLN 471 Query: 469 PVPIRD 474 P P+ + Sbjct: 472 PSPVLN 477 >gi|310789311|gb|EFQ24844.1| NADH-quinone oxidoreductase, chain M [Glomerella graminicola M1.001] Length = 443 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 167/434 (38%), Positives = 273/434 (62%), Gaps = 4/434 (0%) Query: 56 DKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 + + FQ ++ ++ + F Y LGVDGISI V+LTT + P +LS+W SI+EN + Y+ Sbjct: 12 NSSTNQFQFVQEHYNVQLFDIY-LGVDGISIYFVLLTTIIMPIALLSNWNSIKENVKFYL 70 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L+LE++++G FL D+LLFYIFFE+ L P+F++IG++G S ++ A+Y FFLYT +GS Sbjct: 71 NTILLLETLLLGCFLVADILLFYIFFESILPPLFLLIGLFGSSNKVRASYYFFLYTVWGS 130 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +F+L AI+ M T+ L+ + F ++ Q ++ A F +FA+K P+ + WL A Sbjct: 131 LFLLLAILAMYSIMGTTDFDALFK-TNFDYTTQIILFGAIFLAFAVKTPVIFLNNWLLKA 189 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV++P GS+ LAGI+LK+ YG R +LP+ P A+ +++ + +I IIYAS ++ Sbjct: 190 HVESPLGGSIILAGIVLKLSLYGIFRLILPVLPKATLDLTFIVYTIGVITIIYASFSTLR 249 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRL 354 D+K+LIAYSS++H IG FS G+EG++ L+HG VSS LF C G++YDR Sbjct: 250 TVDVKELIAYSSVSHAAVYLIGAFSNTIQGIEGSIALGLAHGFVSSGLFICAGGILYDRS 309 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 TR I+ Y G+ MP ++++ + ++ N G P T FIGEF+ + V + + VLAS Sbjct: 310 GTRMIYLYRGIAQLMPLFSILFFILSLGNCGAPLTLNFIGEFMSLYGVVEKLPLLGVLAS 369 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 +V SA Y+++++ ++ FG S + ++ + D + RE ++ + + TV GIYP I Sbjct: 370 TSIVFSAAYTIYMFNRITFGGSFTKFFEENIFDTTKREFTLLLILVLFTVILGIYPSLIL 429 Query: 474 DTFSVPLSSIIENY 487 D+ ++++I ++ Sbjct: 430 DSLHYSVANLIYSF 443 >gi|284034157|ref|YP_003384088.1| proton-translocating NADH-quinone oxidoreductase subunit M [Kribbella flavida DSM 17836] gi|283813450|gb|ADB35289.1| proton-translocating NADH-quinone oxidoreductase, chain M [Kribbella flavida DSM 17836] Length = 507 Score = 299 bits (765), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 185/506 (36%), Positives = 299/506 (59%), Gaps = 20/506 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVIL-FSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK-G 58 MN+ +L+ + LPF+G V + G + V+LG S +L + + + G Sbjct: 1 MNIGWLTFLLLLPFVGALVTMAVPKASGLLAKQ---VSLGFSLATLALTLVITVGYHRNG 57 Query: 59 RSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREY 114 + ++ E + WI+ F + Y LG+DG+ ++L+VLT LTP L+SW + + + + Sbjct: 58 AADYE--ETHTWIEAFGAHYALGLDGVGLVLIVLTALLTPIVQLASWNDAKGGRWSEKSF 115 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L LE + +G F + D+ LFY+ FEA+LIPM+ +IG +GG++R YAA KF LY+ G Sbjct: 116 FAWILALEVLSLGVFAATDVFLFYVLFEATLIPMYFLIGGFGGAQRSYAAVKFLLYSLLG 175 Query: 175 SIFMLFAIV----VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 + ML ++V V + S ++ + + W+++ FF +FA+K PM PFHT Sbjct: 176 GLLMLASVVGLYVVSAKSGEPSYLLTDLIKVDMSQNTERWLFLGFFFAFAVKAPMVPFHT 235 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+A +A SV L GI+ K+G +G IRF L LFP AS++ PV+ L+LI+++Y + Sbjct: 236 WLPDAAAEATPGTSVLLVGILDKIGTFGMIRFCLGLFPNASEWATPVVLVLALISVLYGA 295 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 LV++ QTDIK+LIAY+SI+H G++ +GIF+ G+ G+ M +HGL ++ALF G + Sbjct: 296 LVAIGQTDIKRLIAYTSISHFGFIVMGIFALTSQGMTGSTLYMFNHGLSTAALFLVAGYL 355 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 R + I YGG+ P A + ++++ LPG S FI EF+V+ F +A Sbjct: 356 ISRRGSARIADYGGVEKVAPVLAGTFLFAGLSSLALPGLSPFISEFMVLAGTFSRHKVIA 415 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 V+A G+VL+ALY L +Y++++ G + + +++LKDL+ RE + P+A+L V FGIYP Sbjct: 416 VVAVLGIVLAALYILIMYQRLMTGPVR-DGIEKLKDLNAREVLAIAPLALLIVGFGIYPK 474 Query: 471 PIRDTFSVPLSSIIENYTLKTGYSDS 496 P+ D + +E+ + G +D Sbjct: 475 PVVDI----IKPAVESTMQRVGVTDK 496 >gi|240266467|ref|YP_002970816.1| NADH dehydrogenase subunit 4 [Trichophyton mentagrophytes] gi|237781097|gb|ACR19590.1| NADH dehydrogenase subunit 4 [Trichophyton mentagrophytes] Length = 487 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 193/485 (39%), Positives = 293/485 (60%), Gaps = 17/485 (3%) Query: 12 LPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI--EYYH 69 +P +G+F I+FS+ + L IN I SL ++ +FD FQ I E + Sbjct: 10 IPLIGIFFIIFSASYQQSNNQIKTIGLITLIINLILSLIIFILFDFSSKQFQYIQLEEIY 69 Query: 70 WIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENFREYMIAFLVLESMVIGA 128 I YF Y LG+DGISI ++LTT + P ++++W SI +N ++I L+LE++++ Sbjct: 70 KISYFDLY-LGIDGISIYFLLLTTMIMPISLVANWNSIDSKNVLSFVIIILLLETLLLAV 128 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 FL LD+LLFYIFFE+ L P+F++IG++G S+++ A++ FLYT GS+FML +I+ M Sbjct: 129 FLVLDILLFYIFFESILPPLFLLIGLFGSSDKVRASFYLFLYTLLGSLFMLLSIITM--- 185 Query: 189 KKTSSII---DLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 SSI+ D A+SK F + Q +++ F SFA+K P +TWL AHV++P AG Sbjct: 186 ---SSIMGATDFDALSKANFGYITQLFLFYGIFLSFAVKTPTIFLNTWLLKAHVESPLAG 242 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LAGI+LK+ YG R +LPL P AS + +++ + +I I+YAS ++ DIK+LI Sbjct: 243 SIILAGIVLKLSLYGIFRLILPLLPKASMDYTYIVYVIGVITILYASFSTLRTIDIKELI 302 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAY 362 AYSS++H + FS G+EGA+ L+HG VSS LF CV G++YDR TR I Y Sbjct: 303 AYSSVSHAAVYLLSAFSNTIQGIEGAITLGLAHGFVSSGLFICVGGILYDRSSTRLITYY 362 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G+ MP + ++ + ++ N G P T FIGEF+ + +F+ + + VLAS +V SA Sbjct: 363 RGMAQLMPIFCILFYILSLGNCGSPLTLNFIGEFMSLYGIFERISVLGVLASTSIVFSAA 422 Query: 423 YSLWLYRKVVFGVSKCEK-VQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 Y+++++ ++ FG +KDLS RE ++ + V VFFGIYP I D +S Sbjct: 423 YTIFMFNRIAFGGQFSSYFFNYVKDLSKREFILLISLVVPAVFFGIYPAVILDGLHYSVS 482 Query: 482 SIIEN 486 +I N Sbjct: 483 GLIYN 487 >gi|332971167|gb|EGK10131.1| NADH-quinone oxidoreductase subunit M [Psychrobacter sp. 1501(2011)] Length = 585 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 179/480 (37%), Positives = 261/480 (54%), Gaps = 61/480 (12%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WID F S+HL +DG+S+L+V LT FL + SW IQ + + L VIG Sbjct: 83 WIDSFGISFHLALDGMSLLMVSLTAFLGIMAVGCSWGEIQRRVGFFHLNLLWSLGGVIGV 142 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++D+ LF+ F+E L+P++ +I +WG G + YAA KFF+YT + ML I+ Sbjct: 143 FLAIDLFLFFFFWEMMLVPIYFLIAIWGHNATNGKTKEYAATKFFIYTQASGLIMLVGIL 202 Query: 184 VMC-WEKKTSSIIDLYAMSKFPFSIQYWMW---IAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ +TS I + W + + FF FA+K+P+ PFH WLP+AH QA Sbjct: 203 LLVIMNYRTSGIFTFNYNELLGVQLGGWEYPIMLCFFIGFAVKLPIMPFHGWLPDAHAQA 262 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAGI++K YG IRF+LPLFP ASQ FAP+ L I I Y + ++ VQTDI Sbjct: 263 PTAGSVDLAGILIKTAAYGLIRFVLPLFPAASQDFAPIAMTLGAIGIFYGAWLAFVQTDI 322 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+L+AY+SI+HMG+V + I++G ++G M QML+HGL S+ALF G +Y+R+HTR++ Sbjct: 323 KRLLAYTSISHMGFVVLAIYAGTLLSLQGLMVQMLAHGLSSAALFIMAGQLYERMHTREL 382 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GG+ +A ++M F A +G+PGT FIGEFL+++ F+ V+A+F +V Sbjct: 383 PLMGGMWGQFRYFAPLLMFFCAALLGIPGTGNFIGEFLILLGSFEKYPVYVVIATFSLVW 442 Query: 420 SALYSLWLYRKVVFGVSKCEK--------------VQQ---------------------- 443 + LYSL + + +FG K QQ Sbjct: 443 AGLYSLIIIHRALFGKETVPKFAAVSTDANTVQPVAQQNHAVQPTNATLTVTDIPPTHMI 502 Query: 444 ---------------LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 L DL+ RE ++ +A+ V+ G+YP + DT S + I Y Sbjct: 503 NHSYEGEEEHDKPINLYDLNKRELMLLLTLAIGLVWLGLYPQTVLDTSSHAMQWIGNAYN 562 >gi|51893906|ref|YP_076597.1| NADH dehydrogenase I subunit M [Symbiobacterium thermophilum IAM 14863] gi|51857595|dbj|BAD41753.1| NADH dehydrogenase I subunit M [Symbiobacterium thermophilum IAM 14863] Length = 508 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 175/489 (35%), Positives = 282/489 (57%), Gaps = 24/489 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV---WSVFDKGRSSF 62 LS++ F+P + V+LF R ++ +G + I F +L + W + + + Sbjct: 2 LSLIIFVPLVFALVMLFFVPKTQERLLYWLAGIG-TLIPFALALVLAAQWPTAEVSTAPY 60 Query: 63 ----QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + + + WI Y LGVDG + +++L+T L P +L+S+ I++ ++Y++ Sbjct: 61 AQGMRFVTHVPWIQAIGVHYTLGVDGFAFTMLLLSTLLFPLAVLASYGYIKDRVKDYLVL 120 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L+L + G F +LD +LFY+F+E L+PM+ +IG+WGG R YAA KFFLYT GS Sbjct: 121 LLILATGTNGVFATLDFMLFYVFWEIVLLPMYFLIGIWGGERREYAAIKFFLYTLIGSTV 180 Query: 178 MLFAIVVM--CWEKKTSSIIDLYAMS-KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLP 233 ML + + T +++ + A S K P + + + + A FA+K+PMFPFHTWLP Sbjct: 181 MLVGAIYLYVATGVGTFNLLQMAAASSKLPITGLTTFAFFALLVGFAVKVPMFPFHTWLP 240 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AHV+APT S+ LAGI+LK+G Y +R P+ P + +A ++F ++ I+YA+L + Sbjct: 241 DAHVEAPTPISMLLAGILLKLGSYAMVRISHPMLPQLATKYADLLFVFGVVGILYAALAA 300 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMK----------SGVEGAMFQMLSHGLVSSAL 343 M Q D KK +AYSS+ HMG+ + + + K ++G F ++HGL+S Sbjct: 301 MAQKDFKKQVAYSSVNHMGFFIMALAAASKLAPTSPELAQVALQGGYFVTIAHGLISPLF 360 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 FF VG+ Y+R HTRD+ GG+ +P + AN+GLPG +GFIGEF+ + + Sbjct: 361 FFAVGMFYERTHTRDLRKLGGMFLTIPVVSFATAFVAFANLGLPGLAGFIGEFISLTGSY 420 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 ++A G+V++A + L R V+ G +K E Q L D++L+E+ + P+AVL V Sbjct: 421 PAFGLWVLVAGLGMVITAAWHLLTMRNVLLGEAKPEY-QGLADITLKEKIIFAPLAVLIV 479 Query: 464 FFGIYPVPI 472 FFG+YP P+ Sbjct: 480 FFGVYPRPV 488 >gi|17232542|ref|NP_489090.1| NAD(P)H-quinone oxidoreductase subunit 4 [Nostoc sp. PCC 7120] gi|21362692|sp|Q8YM86|NU4C3_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase chain 4-3; AltName: Full=NAD(P)H dehydrogenase I, subunit D-3; AltName: Full=NDH-1, chain 4-3 gi|17134188|dbj|BAB76749.1| NADH dehydrogenase subunit 4 [Nostoc sp. PCC 7120] Length = 560 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 193/533 (36%), Positives = 292/533 (54%), Gaps = 50/533 (9%) Query: 4 PFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRSS 61 P+L+ + LP + F+ L G R + ALG+ +F+ + W +D ++ Sbjct: 6 PWLTAIILLPLVASAFIPLLPDKEGKLVRWY---ALGVGIADFVLMCYTFWHHYDTSSAT 62 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL- 119 FQ++E Y W+ S+ + VDGIS+ LV+L F+T +L++W Q N + + FL Sbjct: 63 FQLVEKYDWLPQIGFSWAVSVDGISMPLVLLAGFVTTLSMLAAW---QVNLKPRLFYFLM 119 Query: 120 -VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 VL S IG F++ D+LLF+I +E L+P+++++ +WGG +R YAA KF LYT SIF+ Sbjct: 120 LVLYSAQIGVFVAQDLLLFFIMWELELVPVYLLVSIWGGQKRRYAATKFLLYTAAASIFI 179 Query: 179 LFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A + M + T I++L A +P +++ ++ +F +K+ +FP HTWLP+AH Sbjct: 180 LIAGLAMALYGDNTTFDIVELGA-KNYPLALELLLYAGLLIAFGVKLAIFPLHTWLPDAH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A S+ LAG++LKMGGYG IR L L P A YFAPV+ L +I IIY L S Q Sbjct: 239 GEASAPVSMILAGVLLKMGGYGLIRLNLELLPDAHIYFAPVLATLGVINIIYGGLNSFAQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 T +K+ +AYSS++HMG+V +GI S GV GAM QMLSHGL+++ LFF GV YDR HT Sbjct: 299 THMKRRLAYSSVSHMGFVLLGIASFTDVGVSGAMLQMLSHGLIAAVLFFLAGVTYDRTHT 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVA 410 + GG+ MP+ + TMA++ LPG SGF+ E V + V + TV Sbjct: 359 MAMDNLGGIGQAMPKVFALFTAGTMASLALPGMSGFVSELKVFIGVTTSDIYSPTFCTVM 418 Query: 411 V-LASFGVVLSALYSLWLYRKVVFGV--------------------SKCEKVQQL----- 444 V LA+ GV+L+ +Y L + R+V +G + C L Sbjct: 419 VFLAAVGVILTPIYLLSMLRQVFYGTGAELSCNINNGAYQNQEDEGTACFGTDCLLPGEA 478 Query: 445 --KDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 +D S+RE + VL + G+YP + V ++ N ++ Y+ Sbjct: 479 VYRDASVREVFIAVSFLVLIIGVGVYPKIATQLYDV--KTVAVNTQVRQSYTQ 529 >gi|283850895|ref|ZP_06368181.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio sp. FW1012B] gi|283573818|gb|EFC21792.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfovibrio sp. FW1012B] Length = 498 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 174/489 (35%), Positives = 269/489 (55%), Gaps = 13/489 (2%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 LP+L+ + F P ++ LF + RR AL + + + S+ V +F GR Sbjct: 3 QLPWLTFLVFWPLAAAMLMPLFRGSVAACRR----FALAAAGMELMLSVLVVLLFAAGRP 58 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 ++E WI + Y L DG+S++ VVLT + C+ +S Y L Sbjct: 59 DLPVVEDAAWIPELGIRYTLTCDGLSLVFVVLTACIGLCCMAASRHDDTRRPALYHALIL 118 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + V G FL+ D+ LF +F+EA L+P+F +IGV+G +R+ A KFFL++ G + M Sbjct: 119 CSLATVQGVFLATDLFLFALFWEAQLVPVFFLIGVFGHGDRMRVAIKFFLFSAVGGLLMF 178 Query: 180 FAIVVM---CWEKKTSSIIDLYAMSKFPFSIQ--YWMWIAFFCSFAIKIPMFPFHTWLPN 234 A++ + + L+ +++ P + W++ AF SFAIKIP+ P H WLP+ Sbjct: 179 LAVIALGIYAADGPNGPTFALFDLTRLPLPVTTGRWLFAAFVLSFAIKIPLVPVHMWLPD 238 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH +APTAGS+ LAG++LK GGY IRF LPLFP A+ FAP++ FL L + YAS V++ Sbjct: 239 AHTEAPTAGSLILAGLLLKTGGYALIRFALPLFPEAALAFAPLLTFLGLAGLFYASAVAL 298 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q D+K+L+AYSSI HMG V + I SG + + GA+ M+SH L S LF G+I +RL Sbjct: 299 AQEDVKRLVAYSSIGHMGLVVVAIVSGSRLALGGAVLLMVSHALTSGGLFALAGMIGERL 358 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 +R GGL + P + + +A LPG SGF+GE +++ +F+ + A Sbjct: 359 GSRRFEVLGGLWNRAPAFGAAFLCCVLAAAALPGLSGFVGEAMIVFGLFKAHLAAGLFAV 418 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 G+ ++ Y L L R V+FG ++ + DL RE ++ + + ++ G++P P+ Sbjct: 419 AGMAVTLAYLLRLARDVLFGPAQSSAL--FPDLDARETTLLVSLVLAMLWLGLFPGPVLS 476 Query: 475 TFSVPLSSI 483 S PL I Sbjct: 477 LVSGPLDLI 485 >gi|126666315|ref|ZP_01737294.1| NADH dehydrogenase subunit M [Marinobacter sp. ELB17] gi|126629116|gb|EAZ99734.1| NADH dehydrogenase subunit M [Marinobacter sp. ELB17] Length = 523 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 178/488 (36%), Positives = 285/488 (58%), Gaps = 20/488 (4%) Query: 29 GRRSFFGVALGISTINFIFSLFVWSVFD------KGRSSFQMIEYYH-WIDYF-CSYHLG 80 G + +AL + + SL++W+ +D G ++ +E+ WI+ F +HL Sbjct: 24 GDKPTRWIALVTMLVELLISLWLWAQYDFHLPALDGSTTQWALEFRVVWIERFGIDFHLA 83 Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIF 140 +DG+S++L+ LT+FL +L SW I + + L + + V+G FL++D+ LF+ F Sbjct: 84 MDGLSLVLIALTSFLGALAVLCSWNEIVRRIGFFHLNLLWILTGVVGVFLAIDLFLFFFF 143 Query: 141 FEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 +E L+PM+ +I +WG G RI AA KFF+YT + ML +I+ + + ++ + Sbjct: 144 WELMLVPMYFLIALWGHSGSKGKTRIGAAIKFFIYTQASGLLMLVSILGLVFAHHANTGV 203 Query: 196 -----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ + ++ W+ + FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI Sbjct: 204 YSFSYEVLLETTLSPTLSTWLMLGFFIAFAVKLPVVPLHGWLPDAHAQAPTAGSVDLAGI 263 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK YG +RF LPLFP ASQ FAP+ L L+ I Y ++++ Q ++K+ IAY+SIAH Sbjct: 264 LLKTAAYGMMRFALPLFPEASQAFAPIAMGLGLLGIYYGAVLACGQQNVKRFIAYTSIAH 323 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG+V IGI+SG ++G + ML+H ++ LF G +Y+RLHTR++ GGL + Sbjct: 324 MGFVLIGIYSGSLLALQGVIVLMLAHAFSAAGLFVLSGQLYERLHTREMDKMGGLWGRLG 383 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + F A++G+P T+ F+GEF+V+ F + V V+ASFG+VL+A+YSL L ++ Sbjct: 384 SLPGFWLFFIAASLGIPLTANFVGEFMVLFGTFPTAPWVVVIASFGLVLAAIYSLILMQR 443 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 V +G + + LK L RE M+ I VL ++ GIYP P+ DT + + + + Sbjct: 444 VHYGPPRSDT--PLKGLDAREFAMMLSIVVLLIWLGIYPQPLLDTTEAAMGEVQRVFEIS 501 Query: 491 TGYSDSVK 498 V Sbjct: 502 GAPERGVD 509 >gi|18389522|dbj|BAB84274.1| NADH dehydrogenase ND4 subunit [Psilotum nudum] Length = 514 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 176/497 (35%), Positives = 285/497 (57%), Gaps = 14/497 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 NLP+L+++ PF F+I Y G ++ LGI + F+ F + F Sbjct: 19 NLPWLTLIVLFPFSASFLIPLLPYKGNKVVRWY--TLGICALEFLLITFTFCCQFHLSDP 76 Query: 61 SFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q+ E Y+WI + + ++LGVDG+S+ L++LT F+T IL++W + N R + L Sbjct: 77 SIQLKEDYNWISFLYFHWNLGVDGLSMGLILLTGFITTLAILAAWP-VTRNVRLFYFLML 135 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG F S ++LLF+ +E LIP+++++ +WGG +R+Y++ KF LYT GSIF+L Sbjct: 136 AMYSGQIGLFASQNILLFFFMWELELIPVYLLLSMWGGKKRLYSSTKFLLYTAGGSIFLL 195 Query: 180 FAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + M + DL ++ +P +++ ++ +F ++A+K+P+ PFHTWLP+ H Sbjct: 196 VGSLTMGLYGSNGTSFDLQILTNRSYPIAVETALYFSFLIAYAVKLPILPFHTWLPDTHG 255 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMGGYG IR + L P A F+P++ + + I YASL+S Sbjct: 256 EAHYSTCMLLAGILLKMGGYGLIRINMELLPHAHFLFSPLLVTMGAVQIAYASLISFSLP 315 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 +IK+ IAYSS++HMG+V IGI S G GA+ QM+SHGL+ +ALFF G+ YDR T Sbjct: 316 NIKRRIAYSSVSHMGFVIIGISSITDIGTNGAILQMISHGLIGAALFFLAGISYDRTQTL 375 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN-------SNTVA 410 + GG+ MPR + F++A++ LPG S F+ EFL+ + + N + + Sbjct: 376 YLDQLGGIAVPMPRLFTMFSFFSLASLALPGMSSFVAEFLIFLGIVTNPYYSLIFKSIIL 435 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + GV+L+ +Y L + RK+ +G + DL RE + I + + GIYP Sbjct: 436 FIGAIGVILTPIYLLSMLRKMFYGFKIYQNSLFFIDLGPREIFISVFILLPILGIGIYPN 495 Query: 471 PIRDTFSVPLSSIIENY 487 + ++ + SI+ Y Sbjct: 496 LVLSLWNEKVESILLQY 512 >gi|126022798|ref|NP_569685.2| NADH dehydrogenase subunit 4 [Psilotum nudum] gi|22653888|sp|Q8WHX8|NU4C_PSINU RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 498 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 176/497 (35%), Positives = 285/497 (57%), Gaps = 14/497 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 NLP+L+++ PF F+I Y G ++ LGI + F+ F + F Sbjct: 3 NLPWLTLIVLFPFSASFLIPLLPYKGNKVVRWY--TLGICALEFLLITFTFCCQFHLSDP 60 Query: 61 SFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 S Q+ E Y+WI + + ++LGVDG+S+ L++LT F+T IL++W + N R + L Sbjct: 61 SIQLKEDYNWISFLYFHWNLGVDGLSMGLILLTGFITTLAILAAWP-VTRNVRLFYFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG F S ++LLF+ +E LIP+++++ +WGG +R+Y++ KF LYT GSIF+L Sbjct: 120 AMYSGQIGLFASQNILLFFFMWELELIPVYLLLSMWGGKKRLYSSTKFLLYTAGGSIFLL 179 Query: 180 FAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + M + DL ++ +P +++ ++ +F ++A+K+P+ PFHTWLP+ H Sbjct: 180 VGSLTMGLYGSNGTSFDLQILTNRSYPIAVETALYFSFLIAYAVKLPILPFHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMGGYG IR + L P A F+P++ + + I YASL+S Sbjct: 240 EAHYSTCMLLAGILLKMGGYGLIRINMELLPHAHFLFSPLLVTMGAVQIAYASLISFSLP 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 +IK+ IAYSS++HMG+V IGI S G GA+ QM+SHGL+ +ALFF G+ YDR T Sbjct: 300 NIKRRIAYSSVSHMGFVIIGISSITDIGTNGAILQMISHGLIGAALFFLAGISYDRTQTL 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN-------SNTVA 410 + GG+ MPR + F++A++ LPG S F+ EFL+ + + N + + Sbjct: 360 YLDQLGGIAVPMPRLFTMFSFFSLASLALPGMSSFVAEFLIFLGIVTNPYYSLIFKSIIL 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + GV+L+ +Y L + RK+ +G + DL RE + I + + GIYP Sbjct: 420 FIGAIGVILTPIYLLSMLRKMFYGFKIYQNSLFFIDLGPREIFISVFILLPILGIGIYPN 479 Query: 471 PIRDTFSVPLSSIIENY 487 + ++ + SI+ Y Sbjct: 480 LVLSLWNEKVESILLQY 496 >gi|313206203|ref|YP_004045380.1| NADH dehydrogenase subunit m [Riemerella anatipestifer DSM 15868] gi|312445519|gb|ADQ81874.1| NADH dehydrogenase subunit M [Riemerella anatipestifer DSM 15868] gi|315023112|gb|EFT36125.1| NADH-ubiquinone oxidoreductase chain M [Riemerella anatipestifer RA-YM] gi|325336350|gb|ADZ12624.1| NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Riemerella anatipestifer RA-GD] Length = 494 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 172/452 (38%), Positives = 270/452 (59%), Gaps = 22/452 (4%) Query: 34 FGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF--CSYHLGVDGISILLVVL 91 FG+AL + F+ LF ++ D Q Y W Y S GVDG+ +L+++L Sbjct: 29 FGIALVQLLLAFVM-LFNFNYADSVGGEMQYQIQYDW-SYLIRSSLSFGVDGMGMLMILL 86 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESM-VIGAFLSLDMLLFYIFFEASLIPMFV 150 T L PF ILSS+ Q ++R ++L ++G F +LD LLFYIF+E +LIP++ Sbjct: 87 TNILVPFIILSSFNQ-QTSYRNTFYGLILLMQFGLLGVFTALDGLLFYIFWEVTLIPIWF 145 Query: 151 IIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY--AMSKFPFSI 207 I G+WG +RI KFF+YTFFGS+FML +V + + ++IDLY A++ + Sbjct: 146 ICGIWGQEDQRIKTTTKFFVYTFFGSLFMLVGLVYLYNHSDSFALIDLYNAALNTEQQTF 205 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 +W+ +FA+K+P+FPFHTW P+ + APT GS+ L+GIMLKM YG +R+LLP+ Sbjct: 206 VFWL---IMMAFAVKLPLFPFHTWQPDTYTYAPTQGSMLLSGIMLKMAVYGVLRYLLPIA 262 Query: 268 PLASQYFA-PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSG----- 321 P A + +I ++++ IIY +L+++V D+K++IAYSS++H+G + GIF+ Sbjct: 263 PEAVLGLSGKIIMVMAIVGIIYGALIAIVNNDVKRIIAYSSLSHVGLMVAGIFASAIVTL 322 Query: 322 ----MKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMM 377 G EGAM Q +HG+ LF+C ++ R TRD+ GGL P++AV+ M Sbjct: 323 NGTFTYEGAEGAMVQTFAHGINVVGLFYCADILIKRFGTRDLRQMGGLARVAPKFAVLFM 382 Query: 378 VFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSK 437 V + +M +P T+GFIGEF+++ +VF + +++ V+L+A+Y L LY K +FG Sbjct: 383 VILLGSMAVPLTNGFIGEFMLLKAVFSYNTLAVIVSGLTVILAAVYMLRLYGKAMFGEGD 442 Query: 438 CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + Q+KDLS E ++ ++V + G+YP Sbjct: 443 ETVLSQVKDLSAVEFSVLAGLSVFVIVLGVYP 474 >gi|330881170|gb|EGH15319.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. glycinea str. race 4] Length = 510 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 191/504 (37%), Positives = 297/504 (58%), Gaps = 26/504 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + G + +AL T+ + L++W+ + Sbjct: 1 MILPWLILI---PFIGGLLCWLGERFGSTLPRW--IALLTMTLELVLGLWLWATGNFGYA 55 Query: 57 --KGRSSFQMIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G +E++H WI F HL +DG+S+L+++LT L +L SWK IQ Sbjct: 56 PVPGADPTWALEFHHPWITRFGIDVHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRKVG 115 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYK 166 + + + + V+G FL++D+ +F+ F+E L+PM+ +I +WG S RIYAA K Sbjct: 116 FFHLNLMWILGGVVGVFLAIDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATK 175 Query: 167 FFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAI 221 FF++T + ML AI+ V+ +T I YA +K +Y + + FF +FA+ Sbjct: 176 FFIFTQASGLIMLVAILGLVLVHFNQTGVITFAYADLLKTKLAPGTEYILMLGFFIAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ P + LP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ L Sbjct: 236 KLPVVPLLSRLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 L+ I Y + ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++G + QM++HGL ++ Sbjct: 296 GLVGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGVLIQMIAHGLSAA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G +Y+RLHTRD+ GGL + + + F A++GLPGT F+GEFL+++ Sbjct: 356 ALFILSGQLYERLHTRDMREMGGLWSRIAYIPAISLFFAAASLGLPGTGNFVGEFLILLG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F +S + +A+ G+V ++YSL + + FG SK ++V LK + RE MV +AVL Sbjct: 416 SFASSPWITAIATSGLVFGSVYSLIMIHRAYFGPSKSDEV--LKGMDGREMIMVLGLAVL 473 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIE 485 V G++P P DT + + + + Sbjct: 474 LVVLGVFPQPFLDTSAATMHGVQQ 497 >gi|29831392|ref|NP_826026.1| NADH dehydrogenase subunit M [Streptomyces avermitilis MA-4680] gi|29608507|dbj|BAC72561.1| putative NADH dehydrogenase I chain M (complex I) [Streptomyces avermitilis MA-4680] Length = 532 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 180/510 (35%), Positives = 278/510 (54%), Gaps = 40/510 (7%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M+ P L+ LP LG RR+ +AL +S + + V F+ G Sbjct: 1 MSFPLLTATAVLPALGALATAAVPAA---RRTAAKWLALAVSLATLVLAAVVLVRFEPGG 57 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---------E 109 + +Q+ E + WI D+ Y LGVDGI + LV LT L PF IL+ W Sbjct: 58 ARYQLTESHPWIKDFGVRYELGVDGIGVALVALTALLIPFIILAGWHDADPLETRSSRWR 117 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG------------- 156 + + L +E+MVI +F + D+ LFYIFFEA LIPM+ +IG +G Sbjct: 118 PTQGFFALILAVEAMVILSFEATDVFLFYIFFEAMLIPMYFLIGGFGDRAHGAYQSAVTA 177 Query: 157 -------GSERIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPF- 205 ++R YAA KF LY G + ML A++ V+ I+ A Sbjct: 178 AQRDEAAATQRSYAAVKFLLYNLVGGLIMLAAVIGLYVVAGNFSLQEIVQARANGSLHMA 237 Query: 206 -SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 S + W+++ FF +FA+K P++P HTWLPNA ++ +V + ++ K+G + +RF L Sbjct: 238 TSTERWLFLGFFFAFAVKAPLWPLHTWLPNAMGESTAPVAVLITAVVDKVGTFAMLRFCL 297 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 LFP AS++ PVI L+LI+I+Y +L+++ Q DIK+L+AY+SI+H G++ +GIF+ Sbjct: 298 GLFPEASKWATPVILVLALISIVYGALLAVGQRDIKRLVAYASISHFGFIVLGIFAMTSQ 357 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 G GA M++HG+ ++AL G + R +R I YGG+ P A ++ +A + Sbjct: 358 GQSGATLYMVNHGISTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATL 417 Query: 385 GLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL 444 LPG + F+ EFLV++ F V ++A+FG+VL+ALY+L LY++ + G K E V ++ Sbjct: 418 SLPGLAPFVSEFLVLVGTFTRYPAVGIIATFGIVLAALYTLVLYQRTMTGPVKAE-VAEM 476 Query: 445 KDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 DL RE +V P+ L +F G+YP P+ D Sbjct: 477 PDLRARELLVVAPLIALLIFLGVYPKPVTD 506 >gi|238898689|ref|YP_002924370.1| NADH dehydrogenase I chain M, membrane subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466448|gb|ACQ68222.1| NADH dehydrogenase I chain M, membrane subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 500 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 163/409 (39%), Positives = 255/409 (62%), Gaps = 12/409 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 +HLG+DG+S L++ LT L +L SW+ +++N + + L + VIG FL++D+ Sbjct: 90 EFHLGLDGLSFLMLGLTVLLGTLAVLCSWQEVKKNQGFFYLNLLWILGGVIGVFLAIDLF 149 Query: 136 LFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV--VMCWE 188 LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML AI+ V+ Sbjct: 150 LFFFFWEMMLVPMYFLIALWGHKASDGKTRISAATKFFIYTQASGLIMLIAILGLVLLHY 209 Query: 189 KKTSSIIDLYA-MSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + T I Y + P S ++Y + + FF +FA+K+P+ P H WLP+AH QAPTAGSV Sbjct: 210 RATGEITFNYENLLNTPMSHQVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSV 269 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LAGI+LK YG +RF LPLFP AS FAP+ ++L + I Y + ++ QTDIK+LIAY Sbjct: 270 DLAGILLKTAAYGLLRFSLPLFPHASHEFAPIAYWLGIFGIFYGAWMAFSQTDIKRLIAY 329 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 +S++HMG+V I I++G + +GA+ QM++HGL ++ +F G +Y+RLHTRD+ GGL Sbjct: 330 TSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGMFIICGQLYERLHTRDMREMGGL 389 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 + + + F AN+G+PGT FIGEF+++ F+ + +++FG+V +++YSL Sbjct: 390 WGRIKYLPAISLFFAAANLGMPGTGNFIGEFMILFGSFEVVPLITSISTFGLVFASVYSL 449 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + ++ +G K + L ++ RE ++ + L V G YP P+ D Sbjct: 450 IMMQRTFYGAPKSKS--PLSPMTAREGLILMLLLTLLVLLGFYPQPVLD 496 >gi|166363394|ref|YP_001655667.1| NAD(P)H-quinone oxidoreductase subunit 4 [Microcystis aeruginosa NIES-843] gi|193806214|sp|B0JPG4|NU4C1_MICAN RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 1; AltName: Full=NAD(P)H dehydrogenase I, chain 4 1; AltName: Full=NDH-1, chain 4 1 gi|166085767|dbj|BAG00475.1| NADH dehydrogenase subunit 4 [Microcystis aeruginosa NIES-843] Length = 527 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 176/505 (34%), Positives = 287/505 (56%), Gaps = 28/505 (5%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N P+L+ + P + ++ + G R F AL + I+F ++ +S +D Sbjct: 5 NFPWLTAIILFPIVAALLVPIIPDKDGKTVRWF---ALTVGLIDFALIIYAFYSSYDFAN 61 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q++E Y W+ + + LG DG+S+ L++LT F+T IL++W F+ + F Sbjct: 62 PNLQLVESYQWLPEIDLRWSLGADGLSMPLIILTGFITTLAILAAWPV---TFKPKLFYF 118 Query: 119 LVL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L I F D+LLF++ +E L+P+++I+ +WGG R+YAA KF LYT GS+ Sbjct: 119 LMLLMYGGQIAVFAVQDLLLFFLVWELELVPVYLILSIWGGKRRLYAATKFILYTAGGSL 178 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L A + M + T S D+ ++ FP +Q +++ F ++ +K+P+FP HTWLP+ Sbjct: 179 FILVAALTMAFYGDTVSF-DMVTIAGKDFPLKLQLFLYAGFLIAYGVKLPIFPLHTWLPD 237 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH +A + LAGI+LKMGGY +R + + P A FAPV+ L ++ IIYA+L S Sbjct: 238 AHGEATAPAHMLLAGILLKMGGYALLRMNMGMLPDAHAVFAPVLVILGVVNIIYAALTSF 297 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q ++K+ IAYSSI+HMG+V IG+ S G GAM QM+SHGL+ ++LFF VG YDR Sbjct: 298 AQRNLKRKIAYSSISHMGFVLIGMASFTDIGTSGAMLQMISHGLIGASLFFMVGCTYDRT 357 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT------ 408 HT + GG+ M + + ++A++ LPG SGF+ E +V + F S+ Sbjct: 358 HTLMLDEMGGVGKKMKKVFAMWTTCSLASLALPGMSGFVAELMVFIG-FATSDAYSPTFR 416 Query: 409 --VAVLASFGVVLSALYSLWLYRKVVFGVS--KCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + LA+ GV+L+ +Y L + R++++G + E+ L D RE ++ + V + Sbjct: 417 VIIVFLAAIGVILTPIYLLSMLREILYGPENKELEEHHALVDAEPREVFIIASLLVPIIG 476 Query: 465 FGIYP---VPIRDTFSVPLSSIIEN 486 G+YP I D + L++++ N Sbjct: 477 IGLYPKVATTIYDATTNKLTALVRN 501 >gi|294140404|ref|YP_003556382.1| NADH dehydrogenase I subunit M [Shewanella violacea DSS12] gi|293326873|dbj|BAJ01604.1| NADH dehydrogenase I, M subunit [Shewanella violacea DSS12] Length = 525 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 166/463 (35%), Positives = 272/463 (58%), Gaps = 39/463 (8%) Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + WID + H +DG+S++L++LT + + S+W I+++ + FL + Sbjct: 58 ERHVWIDRLNITAHFSMDGLSLVLILLTLLMGIVALSSAWSEIEKHQGFFYFNFLWTLAG 117 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF---A 181 +IG FL++D+LLF++F+E L+PM+ +I +WG R YAA KFFL+T G + ML A Sbjct: 118 IIGVFLAMDLLLFFVFWEVMLVPMYFLIAIWGHENRRYAALKFFLFTQAGGLLMLMSIIA 177 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +VV +++ + + + P + + W+ + F +F +K+P FP H WLP+AH QA Sbjct: 178 LVVFHYQQTGLLSFNYHVLILTPITSPMTIWICLGFIIAFLVKLPAFPLHPWLPDAHTQA 237 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PT S+ LA I+LK GGYG IRF+LPLFP A Q+++P++ L++++IIY +L++ Q D+ Sbjct: 238 PTPASIILAAILLKTGGYGIIRFVLPLFPDAVQFWSPLMMSLAVLSIIYGALMAFSQHDL 297 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+++AYSS++HMG+V +G FS ++GA+ QML+HGL S+ALF VG+I R ++RD+ Sbjct: 298 KRIVAYSSVSHMGFVLLGCFSLNIIALQGAVMQMLAHGLSSAALFMIVGLIQQRFNSRDL 357 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 + GL +P+ + + + F +A++G+PG FIGEFLV++ + LAS G++L Sbjct: 358 HQFAGLWRYLPQLSAMGLFFAIASLGMPGLGNFIGEFLVLVGALDQHASFTALASLGLIL 417 Query: 420 SALYSLWLYRKVVFG------------------VSKCEKVQQL---------------KD 446 A+YSL + +K FG + E L D Sbjct: 418 GAVYSLRMIQKSFFGPFSSANLRPQNLATETAPTNDTEDQASLPVAEHPKAPGPLSPYPD 477 Query: 447 LSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTL 489 LSL+E+ + IA + G++P P+ D PL+ ++ Y + Sbjct: 478 LSLKEKWTLMSIAAGLILLGLHPQPLLDMLEQPLTQVLALYAI 520 >gi|30179829|sp|Q36834|NU4M_TRIRU RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|3947744|emb|CAA77190.1| NADH dehydrogenase subunit 4 [Trichophyton rubrum] Length = 494 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 178/456 (39%), Positives = 278/456 (60%), Gaps = 8/456 (1%) Query: 37 ALGIST--INFIFSLFVWSVFDKGRSSFQM-IEYYHWIDYFCSYHLGVDGISILLVVLTT 93 +G++T IN I S+ ++ +FD FQ+ +E + I YF Y LG+DGISI ++LTT Sbjct: 41 TIGLTTLIINLILSMIIFILFDFSSKQFQLQLEEIYKISYFDLY-LGIDGISIYFLLLTT 99 Query: 94 FLTPFCILSSWKSIQ-ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 + P ++++W SI +N ++I L+LE++++ FL LD+LLFYIFFE+ L P+F++I Sbjct: 100 MIMPISLVANWNSIDSKNVLSFVIIILLLETLLLAVFLVLDILLFYIFFESILPPLFLLI 159 Query: 153 GVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMW 212 G++G S+++ A++ FLYT GS+FML +I+ M ++ D + + F + Q +++ Sbjct: 160 GLFGSSDKVRASFYLFLYTLLGSLFMLLSIITMS-SIMGATAFDALSKANFSYITQLFLF 218 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 F SFA+K P +TWL AHV++P AGSV LAGI+ K+ YG R ++PL P AS Sbjct: 219 YGIFISFAVKTPTIFLNTWLLKAHVESPLAGSVILAGIVWKLRWYGIFRLIIPLLPKASM 278 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 + +++ + +I I Y S ++ IK+LIAYSS++H + FS G+EGA+ Sbjct: 279 DYTYIVYVIGVITIFYTSFSTLRTIAIKELIAYSSVSHAAVYLLSAFSNTIQGIEGAIAL 338 Query: 333 MLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 L+HG VSS LF CV G++YDR TR I Y G+ MP + ++ + T+ N G P T Sbjct: 339 GLAHGFVSSGLFICVGGILYDRSSTRLITYYRGMAQLMPIFCILFLYITLGNCGSPLTLN 398 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK-VQQLKDLSLR 450 FIGEF+ + +F+ + + VLAS +V SA Y+++++ ++ FG +KDLS R Sbjct: 399 FIGEFMSLYGIFERISVLGVLASTSIVFSAAYTIFMFNRIAFGGQFSSYFFNYVKDLSKR 458 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 E ++ + V VFFGIYP I D +S +I N Sbjct: 459 EFILLISLVVPAVFFGIYPAVILDGLHYSVSGLIYN 494 >gi|170727215|ref|YP_001761241.1| proton-translocating NADH-quinone oxidoreductase subunit M [Shewanella woodyi ATCC 51908] gi|169812562|gb|ACA87146.1| proton-translocating NADH-quinone oxidoreductase, chain M [Shewanella woodyi ATCC 51908] Length = 537 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 178/517 (34%), Positives = 301/517 (58%), Gaps = 43/517 (8%) Query: 12 LPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI 71 LP +G F+ +S + + + T+ F+ S+ + S + + + E WI Sbjct: 9 LPLIGGFLACWSQRVHQDAPKWIAAICTLVTLAFLISIKLASNIED-LELWLVDEPRAWI 67 Query: 72 DYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 + HL +DG+S +L++LT + + S+W I ++ + +L + +IG FL Sbjct: 68 PRLNITAHLAMDGLSFVLLLLTLLMGLVGLSSAWSEINQHRGFFYGNYLWTLAGIIGVFL 127 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV---VMCW 187 ++D+LLF++F+E L+PM+ +I +WG R YAA KFFL+T G + ML +I+ V+ + Sbjct: 128 AMDLLLFFVFWEVMLVPMYFLIAIWGNENRRYAALKFFLFTQAGGLLMLLSIIALTVIHY 187 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWMWI--AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 ++ D + + P + WI F +F +K+P FPFHTWLP+AH QAPT S+ Sbjct: 188 QQTGILSFDYQVLVQSPIQSELAKWICLGFIIAFIVKLPAFPFHTWLPDAHTQAPTPASI 247 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK GGYG +RF+LPLFP ++Q++AP++ L+ ++IIY ++++ QTD+K+L+AY Sbjct: 248 ILAAVLLKTGGYGLLRFVLPLFPESAQFWAPLMMALAGVSIIYGAIMAFSQTDLKRLVAY 307 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG+V +G FS ++GA+ QML+HGL +SALF VG+I R HTRD+ GGL Sbjct: 308 SSVSHMGFVLLGCFSFNFYALQGAVMQMLAHGLSTSALFMLVGLIQHRFHTRDLNHLGGL 367 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 H +P+ + + + F +A++G+PG FI E LV++ F+ + A++AS G++L+A+YSL Sbjct: 368 WHTLPKLSAMGLFFGVASLGMPGMGNFIAELLVLLGTFKQAPIFAIVASSGLILAAVYSL 427 Query: 426 WLYRKVVFGVS-KCE--------------------------------KVQQLKDLSLRER 452 + +K FG++ K E + + DLS++E Sbjct: 428 RMIQKSFFGMNLKLETSLSDEKSSDNSSRDGIDNSSADLGAKHHSDAHTRYVTDLSVKEG 487 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTL 489 + + + + G++P PI F++ SS++E +L Sbjct: 488 LTLMLMCLGLIVMGLHPQPI---FTLVNSSLMEILSL 521 >gi|148656355|ref|YP_001276560.1| proton-translocating NADH-quinone oxidoreductase subunit M [Roseiflexus sp. RS-1] gi|148568465|gb|ABQ90610.1| proton-translocating NADH-quinone oxidoreductase, chain M [Roseiflexus sp. RS-1] Length = 507 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 177/486 (36%), Positives = 291/486 (59%), Gaps = 21/486 (4%) Query: 1 MNL-PFLSIVTFLPFLGVFVIL-FSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG 58 MN+ P LS++ +LP LG V+L +RS V++ + + +L V FD Sbjct: 1 MNVAPLLSLMIWLPALGALVVLTLPRERVAAQRS---VSMSAALLALAAALGVVFFFDPA 57 Query: 59 RSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 R+ FQ++E WI + SY + VDGIS+ LVVLT FLTP + +SW +I+ R + Sbjct: 58 RAGFQLVESVAWIPSWGISYTVSVDGISLWLVVLTAFLTPVALAASWGTIERQERAFHAL 117 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L+L S + G F + DMLLFY+FFE +L+P ++IG+WGG ER YAA KFF YTF GS+F Sbjct: 118 VLLLASGLFGVFTAQDMLLFYVFFEFTLVPTALLIGIWGGVERRYAAIKFFAYTFTGSVF 177 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ-----------YWMWIAFFCSFAIKIPMF 226 +L I+ + ++ + + ++ S+Q M+ FF FA+K P++ Sbjct: 178 LLLGIIGLYLLHGQATGVYTFDIATILASLQLGTLQLNPAAERLMFGLFFIGFAVKTPIW 237 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 PFHTW+ AH +AP++G++ + G+++K+G YG IR+ + LFP + + AP I L++I I Sbjct: 238 PFHTWMTTAHAEAPSSGAIDIVGLLIKIGAYGLIRYTIQLFPATAAWAAPAISVLAVIGI 297 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 +YA+ ++ QTD+K+L+AY+S++H+G + +G+F+ G+ G++ M++ L + ALF Sbjct: 298 LYAAWIAYQQTDMKRLLAYASVSHLGLIVLGMFALNPQGIAGSVAHMVNSALTTGALFLV 357 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 VG++ R +R++ +YGGL + P + ++ + ++GLPG +GF+ EF V+ +++ Sbjct: 358 VGMLVARRGSRELKSYGGLWKSTPVLGSLTLILVLGSIGLPGLNGFVSEFAVLQGAWRSP 417 Query: 407 N---TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 A+ A G VL+A+Y L +YR G + E + Q D+ RE ++ +A V Sbjct: 418 GLGWRYALPALLGAVLAAVYLLHMYRMAFMGDAPPE-LAQAPDVRPRELALLVIMATPVV 476 Query: 464 FFGIYP 469 FG+YP Sbjct: 477 LFGLYP 482 >gi|254480971|ref|ZP_05094217.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [marine gamma proteobacterium HTCC2148] gi|214038766|gb|EEB79427.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [marine gamma proteobacterium HTCC2148] Length = 510 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 174/414 (42%), Positives = 261/414 (63%), Gaps = 11/414 (2%) Query: 68 YHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI 126 + WI F S LG+DG+S+L+++LT L I+SSW I+ N + L + VI Sbjct: 72 HEWIPRFGISLELGMDGLSLLMLILTLALGAIAIVSSWNEIEFNPGLFQANLLWTLTGVI 131 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 G FL+LD+ LF++F+E LIPM+++I +WG R YAA KFF++T + ML +I+V+ Sbjct: 132 GVFLALDLFLFFLFWEVMLIPMYLLIAIWGHENRGYAAMKFFIFTQVSGLLMLLSIIVLA 191 Query: 187 WEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + I DL + + M + FF +F +K+P FPFHTWLP+AH QAPT Sbjct: 192 VQGAGDGDISFSYGDLLGSAPTGKAGMLTM-LGFFLAFTVKLPGFPFHTWLPDAHTQAPT 250 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LAGI+LK G YG +RF +PLFP AS FAP+ L + IIY ++++ Q+D K+ Sbjct: 251 AGSVLLAGILLKTGAYGLLRFCIPLFPEASMQFAPIAMTLGTVGIIYGAVLAFAQSDFKR 310 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSS++HMG+V +G+++ ++GA+ QM++HG+ ++ALF G + RLHTRD+ Sbjct: 311 LVAYSSVSHMGFVLLGLYAWNSLALQGAIMQMVAHGVSTAALFMMAGALQHRLHTRDMNR 370 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GGL +N PR M F +A++GLPG F+ EFLV+ +F S + A+ G++ +A Sbjct: 371 MGGLWYNAPRMGACAMFFAVASLGLPGMGNFVAEFLVLAGLFAVSPWMTAAAAIGLITAA 430 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRE-RCMVYPIAVLTVFFGIYPVPIRD 474 +YSLWL +K G K ++ ++L+D RE MV +A L ++ G+YP P+ D Sbjct: 431 IYSLWLMQKTFQG--KPDEERKLQDFDRREMGAMVIMMAAL-LWLGLYPQPVFD 481 >gi|218438857|ref|YP_002377186.1| NAD(P)H-quinone oxidoreductase subunit 4 [Cyanothece sp. PCC 7424] gi|218171585|gb|ACK70318.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7424] Length = 532 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 170/499 (34%), Positives = 287/499 (57%), Gaps = 23/499 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 + LP+L+ + LP I F + ++ +++G++ +F+ + W +D Sbjct: 4 IQLPWLTAIILLPLCAALAIPFINDKDGKTVRWYALSIGLA--DFVLMCYAFWYNYDINS 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q+ E Y WI ++ +GVDG+S+ L+VL+ ++ +L+SWK ++ + + Sbjct: 62 TELQLRETYAWIPQIGLNWSVGVDGLSMPLIVLSGLISTLALLASWK-VERKPKLFYFLM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L S +G F + D+LLF+ +E L+P++++I +WGG++R+YAA KF LYT SIF+ Sbjct: 121 LLLYSAQMGVFAAQDLLLFFFMWELELVPVYILISIWGGNKRLYAATKFILYTALASIFI 180 Query: 179 LFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L A + + + T + + M +FP +++ + F +F +K+P+FP HTWLP+AH Sbjct: 181 LVAALGLAFYGDTVTFDMTELGMKQFPLAVEVLAYAGFLIAFGVKLPIFPLHTWLPDAHS 240 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A S+ LAG++LKMGGYG IR + + P A FAPV+ L +I I+Y +L + QT Sbjct: 241 EASAPVSMILAGVLLKMGGYGLIRMNIEMLPHAHVKFAPVLVILGVINIVYGALAAFGQT 300 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ +A SSI+HMG+V IGI S G+ GA+ QMLSHGL+++ALFF G Y+R HT Sbjct: 301 NLKRRLASSSISHMGFVLIGIASFTNLGMNGAVLQMLSHGLIAAALFFLCGSTYERTHTL 360 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NTVA 410 + GGL MP+ + +MA++ LPG SGF+ E + + + V Sbjct: 361 MMDEMGGLGKAMPKIFALFTAASMASLALPGMSGFVSELTIFLGTATSDVYSSPFKVMVT 420 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLK-DLSLRE----RCMVYPIAVLTVF 464 +LA+ G++++ +Y L R V +G + + ++Q K D RE C++ PI + Sbjct: 421 LLAAVGLIITPIYLLSTLRVVFYGQNNTQLGLEQFKADAKPREIFVTACLLIPI----IT 476 Query: 465 FGIYPVPIRDTFSVPLSSI 483 G+YP + T+ V + + Sbjct: 477 IGLYPKLMTTTYDVKATEV 495 >gi|300775185|ref|ZP_07085047.1| NADH-quinone oxidoreductase subunit M [Chryseobacterium gleum ATCC 35910] gi|300505925|gb|EFK37061.1| NADH-quinone oxidoreductase subunit M [Chryseobacterium gleum ATCC 35910] Length = 497 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 168/457 (36%), Positives = 272/457 (59%), Gaps = 16/457 (3%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEY---YHWIDYFCS-YHLGVDGISILLVVL 91 +ALGI+ + + + ++ S F+ G + ++Y Y W + S H GVDG+S+LL++L Sbjct: 30 LALGIALVQMLLTFYMLSDFNFGPTVDSKLQYEITYPWSQFIKSTLHFGVDGMSMLLLLL 89 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 T L P ILSS+ + L+++ ++G F SLD LLFYIF+E +LIP++ I Sbjct: 90 TNILAPIIILSSFNENVSYRNTFYGLILLMQFGLVGVFTSLDGLLFYIFWEVTLIPIWFI 149 Query: 152 IGVWGGSERIYA-AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW 210 G+WG + + KFF+YTF GS+FML ++ + + ++ DLY Sbjct: 150 AGLWGQENKRFEFTTKFFVYTFVGSLFMLAGLIYVYNHSASFALTDLYNAQLNETQQTVV 209 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 W FF +FA+K+P+FPFHTW P+ + +PT GS+ L+GIMLKM YG +R+LLP+ P+ Sbjct: 210 FWFIFF-AFAVKLPVFPFHTWQPDTYTYSPTQGSMLLSGIMLKMAVYGVMRYLLPITPIP 268 Query: 271 -SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMK------ 323 + ++ L+++ I++ +L++++QTD+K++IAYSS +H+G + GIF+ Sbjct: 269 IAGISGQIVIILAIVGIVHGALIAIIQTDMKRIIAYSSFSHVGLMVAGIFASAVVTLRGT 328 Query: 324 ---SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFT 380 G EGA+ Q +HG+ LF+C ++Y R +RDI GGL P++AV+ ++ Sbjct: 329 FNVEGAEGALVQTFAHGINVVGLFYCCDILYKRFKSRDIRQMGGLAKVAPKFAVLFLIII 388 Query: 381 MANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK 440 + +MG+P T+GFIGEF+++ SV+ + T AV+A V+L A+Y L Y K +FG Sbjct: 389 LGSMGVPLTNGFIGEFILLKSVYDFNGTAAVIAGLTVILCAVYLLRFYGKAMFGEGDAAV 448 Query: 441 VQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 + KDLS E ++ +AV + GI+P P+ + S Sbjct: 449 LSTAKDLSGVEFSVLASLAVFVILLGIFPQPVIEMVS 485 >gi|149374616|ref|ZP_01892390.1| proton-translocating NADH-quinone oxidoreductase, chain M [Marinobacter algicola DG893] gi|149361319|gb|EDM49769.1| proton-translocating NADH-quinone oxidoreductase, chain M [Marinobacter algicola DG893] Length = 511 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 185/462 (40%), Positives = 275/462 (59%), Gaps = 18/462 (3%) Query: 29 GRRSFFGVALGISTINFIFSLFVWSVFD---KGR-SSFQMIEYY-HWIDYF-CSYHLGVD 82 G R+ +AL I SL +W D G + ++E+ WI F HL +D Sbjct: 24 GDRAPRWIALATMLFVLIISLVLWVTGDFALPGEVTRHWLLEWRTSWIPRFGIEIHLAMD 83 Query: 83 GISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFE 142 G+S++LV LT FL +L SW I + + L + V+G FL+LD+ LF++F+E Sbjct: 84 GLSLILVALTGFLGALAVLCSWHEIDHRVGFFHLNLLFILGGVVGVFLALDLFLFFLFWE 143 Query: 143 ASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS---- 193 L+PM+ +I +WG G RI AA +FF+YT + ML AI+ + + +++ Sbjct: 144 MMLVPMYFLIALWGHSGSAGQTRIRAATRFFIYTQASGLLMLVAILSLVFVHYSNTGELS 203 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 D + P ++ W+ + FF +FA+K+P+ PFH WLP+AH QAPTAGSV LAGI+L Sbjct: 204 FSYDTLLDTDVPEALAPWLMLGFFVAFAVKLPVVPFHGWLPDAHAQAPTAGSVDLAGILL 263 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K YG +RF LPLFP SQ FAPV L L+ IIY ++++ Q DIK+LIAY+SI+HMG Sbjct: 264 KTAAYGILRFALPLFPEESQAFAPVAMTLGLVGIIYGAVLACGQQDIKRLIAYTSISHMG 323 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 +V I ++SG + ++GA+ M++H S+ LF G +Y+R+HTRD+ GGL +P Sbjct: 324 FVLIALYSGSELAIQGAIILMVAHAFSSAGLFILSGQLYERIHTRDMRIMGGLWGRIPVL 383 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + F A++G+P T+ F+GEF+V+ F N+ V V+AS G+VL+A+YSL L ++V Sbjct: 384 PGFTLCFVAASLGMPATANFVGEFMVLFGTFPNAPVVVVIASVGLVLAAIYSLLLMQRVH 443 Query: 433 FGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 +G + L+ RE M+ + VLTV G+YP PI D Sbjct: 444 YGPEYRQGA--LRGPDAREYGMMLVLLVLTVMVGLYPQPILD 483 >gi|224178043|ref|YP_002600963.1| subunit 4 of NADH-plastoquinone oxidoreductase [Pyramimonas parkeae] gi|215882710|gb|ACJ71083.1| subunit 4 of NADH-plastoquinone oxidoreductase [Pyramimonas parkeae] Length = 509 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 180/503 (35%), Positives = 290/503 (57%), Gaps = 21/503 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKG 58 ++ P+L+I+T P +I F + G R + ALG+S +F+ L+ + + Sbjct: 2 IHFPWLTIITLFPITASLLIPFIPDFNGKTVRWY---ALGVSLFDFLLILYFFGCKYSFK 58 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 S+ Q +E Y WI + LGVDGIS+ L++LT F+T L++W I +N + + Sbjct: 59 DSALQFVEDYSWISGLGLHWSLGVDGISMPLILLTGFITTLATLAAWP-ITKNSKLFYFL 117 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L + S IG F S D+LLF+ +E LIP++V++ +WGG +R+YA KF LYT GSIF Sbjct: 118 MLAMYSGQIGVFASQDLLLFFFMWELELIPVYVLLSLWGGKKRLYAGTKFILYTALGSIF 177 Query: 178 MLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L A + M + E T ++++L A ++P S++ ++ F ++ +K+ FP HTWLP+ Sbjct: 178 ILLAALAMAFYGEPITFNMVEL-AQKQYPLSLEILAYVGFLIAYGVKLSAFPLHTWLPDT 236 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + + LAGI+LKMGGY IR + + P A FAP + + +I IIYA+L S Sbjct: 237 HGEAHYSTCMLLAGILLKMGGYALIRINMDILPNAHYSFAPFLVTIGVINIIYAALTSFA 296 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSS++HMG+V IG+ S SG+ G M QM+SHGL+ + LFF G YDR Sbjct: 297 QRNLKRKIAYSSVSHMGFVLIGLGSLTDSGLSGVMLQMISHGLIGAGLFFLAGATYDRTR 356 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL--- 412 T + GGL MP+ + V + A++ LPG SGFI E +V + F S++ + L Sbjct: 357 TLLLEDLGGLAVFMPKIFAMFSVVSFASLALPGMSGFISELMVFLG-FLTSDSYSYLFRA 415 Query: 413 -----ASFGVVLSALYSLWLYRKVVFGVSKCE--KVQQLKDLSLRERCMVYPIAVLTVFF 465 A+ G++L+ +Y L + R+V +G + + ++L D RE +V+ + V + Sbjct: 416 LITFFAAIGILLTPIYLLSMLRQVFYGSKRGQLSHTRKLIDAGPREIFVVFCLLVPMIGI 475 Query: 466 GIYPVPIRDTFSVPLSSIIENYT 488 G+YP + + ++ ++T Sbjct: 476 GLYPKMFTQIYEIRTDMVVTHFT 498 >gi|50083960|ref|YP_045470.1| NADH dehydrogenase subunit M [Acinetobacter sp. ADP1] gi|49529936|emb|CAG67648.1| NADH dehydrogenase I chain M, membrane subunit [Acinetobacter sp. ADP1] Length = 532 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 171/439 (38%), Positives = 246/439 (56%), Gaps = 17/439 (3%) Query: 67 YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 Y WI + HL VDG+S+++V LT L + SW IQ+N + + L V Sbjct: 72 YIPWIKTLGINIHLAVDGLSLMMVGLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGV 131 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLF 180 IG FL++DM LF+ F+E L+P++ +I +WG G R+YAA KFFLYT + ML Sbjct: 132 IGVFLAIDMFLFFFFWEMMLVPIYFLIALWGHKGSNGRSRVYAATKFFLYTQIAGLIMLI 191 Query: 181 AIV-VMCWEKKTSSIID------LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 I+ ++ + + +I L + P + Y + FF FA+K+P+FP H WLP Sbjct: 192 GILGLVVYGYMMTGMIGFDYNYLLAVANNLPAGVAYAFMLCFFIGFAVKLPVFPLHGWLP 251 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH QAPTAGSV LAGI++K YG +RF++P FP AS FA + LI I Y + + Sbjct: 252 DAHAQAPTAGSVDLAGILIKTAAYGLLRFVIPFFPAASAQFADIAIIFGLIGIFYGAWCA 311 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 QTD+K+L+AY+SI+HMG+V + I++G +G M ML+HGL S+ALF G IY+R Sbjct: 312 YQQTDMKRLLAYTSISHMGFVLLAIYAGNILTYQGLMIMMLAHGLSSAALFIMCGQIYER 371 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 LHTRD+ GG+ +M F A +G+PG FIGEFL++M F T ++A Sbjct: 372 LHTRDLRLMGGIRGQFRYLPFFLMFFVAALVGIPGLGNFIGEFLILMGSFNKYPTFTIIA 431 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYP 469 + +V + LY L L + +FG E+ Q LKDLS RE ++ + V+ GIYP Sbjct: 432 AVSLVFAGLYGLILIHRALFGEPNPEQAQHYKQPLKDLSTREVGILMICLIGLVWLGIYP 491 Query: 470 VPIRDTFSVPLSSIIENYT 488 D + + Y Sbjct: 492 QTFLDISHSSMQWLTNGYA 510 >gi|225554144|gb|EEH02509.1| NADH dehydrogenase subunit 4 [Ajellomyces capsulatus G186AR] Length = 459 Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 185/435 (42%), Positives = 274/435 (62%), Gaps = 7/435 (1%) Query: 55 FDKGRSSFQMIE--YYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE-NF 111 FD FQ I+ ++ I+YF Y LGVDGISI V+LTT +TP ++S+WKSI E N Sbjct: 24 FDFSSKQFQFIQVQEHYQINYFDIY-LGVDGISIYFVLLTTIITPIALISNWKSIDEKNV 82 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 ++I L+LE++++G FL LD+LLFYIFFE+ L P+F++IG++G S ++ A++ FLYT Sbjct: 83 LSFVIIILLLEALLLGVFLVLDLLLFYIFFESILPPLFLLIGLFGSSNKVRASFYLFLYT 142 Query: 172 FFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 GS+FML +I+ M T+ D + + F + Q +++ F SFA+K P +TW Sbjct: 143 LLGSLFMLLSIITMSSIMGTTDF-DALSKANFNYITQLFLFYGIFISFAVKTPTIFLNTW 201 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 L AHV++P AGS+ LAGI+LK+ YG R +LPL P AS + +I+ + +I IIYAS Sbjct: 202 LLKAHVESPLAGSILLAGIVLKLSLYGIFRLILPLLPKASINYTYIIYVIGVITIIYASF 261 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVI 350 ++ DIK+LIAYSS++H +G FS G+EGA+ L+HG VSS LF CV GV+ Sbjct: 262 STLRTIDIKELIAYSSVSHAAVYLLGAFSNSIQGIEGAISLGLAHGFVSSGLFICVGGVL 321 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 YDR TR I Y GL MP ++++ + ++ N G P T FIGEF+ + F+ + Sbjct: 322 YDRSSTRLITYYRGLAQLMPIFSILFYILSLGNCGAPLTLNFIGEFMSLYGTFERVPFLG 381 Query: 411 VLASFGVVLSALYSLWLYRKVVF-GVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +LAS +V SA Y++++Y ++ F G+ + L DL+ RE ++ + + TV FG+YP Sbjct: 382 LLASSSIVFSAAYTIFMYNRIAFGGIFSSYFFKYLFDLNKREFVLLTCLVIFTVLFGVYP 441 Query: 470 VPIRDTFSVPLSSII 484 PI D +SS+I Sbjct: 442 APILDGLHYSVSSLI 456 >gi|34501451|ref|NP_904238.1| NADH dehydrogenase subunit 4 [Physcomitrella patens subsp. patens] gi|68052620|sp|Q6YXQ3|NU4C_PHYPA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|34494821|dbj|BAC85088.1| NADH dehydrogenase ND4 subunit [Physcomitrella patens subsp. patens] Length = 501 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 183/505 (36%), Positives = 285/505 (56%), Gaps = 27/505 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK-GRS 60 N P+L+ + LP VI F G ++ LG+ + F+ +V+ + K Sbjct: 3 NFPWLTTIVLLPVFAGCVIPFFPNKGNNLIRWY--TLGVCLLEFLLITYVFCYYFKFDDP 60 Query: 61 SFQMIEYYHWIDYFCSYH--LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q+ E Y+WID F +H LG+DG+SI L++LT F+T L++W + N R + Sbjct: 61 IIQLKEDYNWID-FLDFHWRLGIDGLSIGLILLTGFITTLATLAAWP-VTRNPRLFYFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S +G F S D+LLF+ +E LIP+++++ +WGG R+YA KF LYT GSIF+ Sbjct: 119 LAMYSGQVGLFASQDILLFFFMWELELIPVYLLLCIWGGKRRLYATTKFILYTAGGSIFI 178 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L + M + +D +S +P ++ +++ FF ++A+K+P+FP HTWLP+ H Sbjct: 179 LMGALTMGFYGSNQLTLDFQNLSNKSYPLELEIILYLGFFIAYAVKLPIFPLHTWLPDTH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMGGYG IR + L P A FAP I + I I+YA+L+S Q Sbjct: 239 GEAHYSTCMLLAGILLKMGGYGLIRINMELLPHAHSIFAPWIVAVGAIQIVYAALISFSQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSSI+HMG+V IGI S G+ GA+ QM+SHGL+ +ALFF G+ YDR T Sbjct: 299 RNLKRRIAYSSISHMGFVLIGIGSMTDVGLNGAILQMVSHGLIGAALFFLAGITYDRTRT 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV-------FQNSNTV 409 + GG MP+ + F+MA++ LPG SGF+ EFLV + + F V Sbjct: 359 LFLDQMGGTAIYMPKIFTMFSSFSMASLALPGMSGFVAEFLVFLGIVVSNKYSFNFKILV 418 Query: 410 AVLASFGVVLSALYSLWLYRKVVFG--VSKCEKVQQLK-DLSLRE----RCMVYPIAVLT 462 ++ + G++L+ +Y L + R++ +G SK D RE C+++PI Sbjct: 419 TIIEAIGIILTPIYLLSMLRQMFYGYKFSKFTTFSNSNMDAGPREIFILVCLIFPI---- 474 Query: 463 VFFGIYPVPIRDTFSVPLSSIIENY 487 V G+YP + ++ +S I+ + Sbjct: 475 VGIGLYPNSVLSLWNSKVSFILSKF 499 >gi|294630808|ref|ZP_06709368.1| NADH-quinone oxidoreductase, M subunit [Streptomyces sp. e14] gi|292834141|gb|EFF92490.1| NADH-quinone oxidoreductase, M subunit [Streptomyces sp. e14] Length = 526 Score = 296 bits (758), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 186/523 (35%), Positives = 290/523 (55%), Gaps = 42/523 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M+ P L+ LP +G RR+ +AL +S ++ V FD Sbjct: 4 MSFPLLTATAVLPAIGAVATAAVPAA---RRTAAKWLALLVSLATLALAITVLVRFDPDG 60 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW---KSIQENFREYM 115 + +Q+ E + WI F Y LGVDGI + LV LT L PF IL+ W + ++ R + Sbjct: 61 ARYQLTESHSWIAAFGVRYELGVDGIGVALVALTALLMPFVILAGWNDAEPLETGSRRWR 120 Query: 116 IA------FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GS 158 L +E+MVI +F + D+ LFYIFFEA LIPM+ +IG +G + Sbjct: 121 PTQGFFALILAVEAMVIISFEATDVFLFYIFFEAMLIPMYFLIGGFGDRAHEHGEETAAT 180 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI------QYWMW 212 +R YAA KF LY G + ML A++ + S+ ++ A ++ S+ + W++ Sbjct: 181 QRSYAAVKFLLYNLAGGLIMLAAVIGLYTVTGNFSLAEI-AQARANGSLHMATGTERWLF 239 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 + FF +FA+K P++P HTWLPNA ++ +V + ++ K+G + +RF L LFP AS+ Sbjct: 240 LGFFFAFAVKAPLWPLHTWLPNAMGESTAPVAVLITAVVDKVGTFAMLRFCLQLFPEASK 299 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 + PVI L+LI+IIY +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G GA Sbjct: 300 WATPVILVLALISIIYGALLAVGQRDIKRLIAYASISHFGFIIMGIFAMTSQGQSGATLY 359 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 M++HG+ ++AL G + R +R I YGG+ P A ++ +A + LPG + F Sbjct: 360 MVNHGISTAALLLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPF 419 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 + EFLV++ F + ++A+FG+VL+ALY+L LY++ + G K E V + DL +RE Sbjct: 420 VSEFLVLVGTFTRHPAIGIIATFGIVLAALYTLVLYQRTMTGQVKPE-VSAMPDLKVREL 478 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 +V P+ VL +F G+YP P+ D I N +K SD Sbjct: 479 VVVAPLIVLLLFLGVYPKPVTD---------IVNPAVKQTMSD 512 >gi|86606561|ref|YP_475324.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. JA-3-3Ab] gi|123505871|sp|Q2JTD6|NU4C2_SYNJA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 2; AltName: Full=NAD(P)H dehydrogenase I, chain 4 2; AltName: Full=NDH-1, chain 4 2 gi|86555103|gb|ABD00061.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family [Synechococcus sp. JA-3-3Ab] Length = 535 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 165/431 (38%), Positives = 258/431 (59%), Gaps = 22/431 (5%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 +D ++S Q++E Y W+ S+ +G DG+S+ L++LT F+T IL++W + R Sbjct: 72 YDPSQTSLQLLERYTWVPQVGLSWSVGADGLSMPLILLTAFVTTLAILAAWP-VTLKPRL 130 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 + L + IG F DMLLF++ +E LIP+++++ +WGG R+YAA KF LYT Sbjct: 131 FYFLMLAMYGGQIGVFAVQDMLLFFLMWELELIPVYLLLSIWGGYNRLYAATKFILYTAL 190 Query: 174 GSIFMLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 S+F+L A + M + + + + DL A +P S Q ++ AF ++ +K+P+FP HTW Sbjct: 191 SSLFILVAGLAMAFYGDPISFDMTDL-AHKAYPLSFQLLLYGAFLIAYGVKLPVFPLHTW 249 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A + LAGI+LKMGGY +R + + P A YFAPV+ L ++ II+A+L Sbjct: 250 LPDAHGEATAPVHMLLAGILLKMGGYALMRMNVGMLPDAHLYFAPVLIVLGVVNIIFAAL 309 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 S Q ++K+ IAYSSI+HMG+V IGI S + G+ GAM QM+SHGL+ ++LFF VG Y Sbjct: 310 TSFAQRNLKRKIAYSSISHMGFVLIGIGSLTEIGMSGAMLQMISHGLIGASLFFLVGATY 369 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---- 407 DR HT ++ GG+ MP+ + ++A++ LPG SGF+ E +V + + Sbjct: 370 DRTHTLELEEMGGVGLKMPKIFSMFTACSLASLALPGMSGFVAELMVFIGMATTDAYSLP 429 Query: 408 ---TVAVLASFGVVLSALYSLWLYRKVVFGVSKCE--KVQQLKDLSLRE----RCMVYPI 458 V LA+ GV+L+ +Y L + R++ FG E + ++L D RE C++ PI Sbjct: 430 FRLVVVFLAAVGVILTPIYLLSMLRQIFFGPENKELTEHEELVDAEPREVFIIACLLIPI 489 Query: 459 AVLTVFFGIYP 469 + G+YP Sbjct: 490 ----IGIGLYP 496 >gi|159030165|emb|CAO91057.1| ndhD1 [Microcystis aeruginosa PCC 7806] Length = 527 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 176/505 (34%), Positives = 286/505 (56%), Gaps = 28/505 (5%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N P+L+ + P + ++ + G R F AL + I+F ++ +S +D Sbjct: 5 NFPWLTAIILFPIVAALLVPIIPDKDGKTVRWF---ALTVGLIDFALIIYAFYSSYDFAN 61 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q++E Y W+ + + LG DG+S+ L++LT F+T IL++W F+ + F Sbjct: 62 PNLQLVESYQWLPEIDLRWSLGADGLSMPLIILTGFITTLAILAAWPV---TFKPKLFYF 118 Query: 119 LVL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L I F D+LLF++ +E L+P+++I+ +WGG R+YAA KF LYT GS+ Sbjct: 119 LMLLMYGGQIAVFAVQDLLLFFLVWELELVPVYLILSIWGGKRRLYAATKFILYTAGGSL 178 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L A + M + T S D+ ++ FP +Q +++ F ++ +K+P+FP HTWLP+ Sbjct: 179 FILVAALTMAFYGDTVSF-DMVTIAGKDFPLKLQLFLYAGFLIAYGVKLPIFPLHTWLPD 237 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH +A + LAGI+LKMGGY +R + + P A FAPV+ L ++ IIYA+L S Sbjct: 238 AHGEATAPAHMLLAGILLKMGGYALLRMNMGMLPDAHAVFAPVLVILGVVNIIYAALTSF 297 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q ++K+ IAYSSI+HMG+V IG+ S G GAM QM+SHGL+ ++LFF VG YDR Sbjct: 298 AQRNLKRKIAYSSISHMGFVLIGMASFTDIGTSGAMLQMISHGLIGASLFFMVGCTYDRT 357 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT------ 408 HT + GG+ M + + ++A++ LPG SGF+ E +V + F S+ Sbjct: 358 HTLMLDEMGGVGKKMKKVFAMWTTCSLASLALPGMSGFVAELMVFIG-FATSDAYSPTFR 416 Query: 409 --VAVLASFGVVLSALYSLWLYRKVVFGVS--KCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + LA+ GV+L+ +Y L + R++++G + E+ L D RE ++ + V + Sbjct: 417 VIIVFLAAIGVILTPIYLLSMLREILYGPENKELEEHHVLVDAEPREVFIIASLLVPIIG 476 Query: 465 FGIYP---VPIRDTFSVPLSSIIEN 486 G+YP I D + L+++ N Sbjct: 477 IGLYPKVATTIYDATTNKLTALARN 501 >gi|240266720|ref|YP_002970900.1| NADH dehydrogenase subunit 4 [Microsporum canis] gi|237781136|gb|ACR19626.1| NADH dehydrogenase subunit 4 [Arthroderma otae] Length = 487 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 181/443 (40%), Positives = 272/443 (61%), Gaps = 17/443 (3%) Query: 54 VFDKGRSSFQMI--EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-EN 110 +FD FQ I E + I YF Y LG+DGISI ++LTT + P ++++W SI +N Sbjct: 52 LFDFSSKQFQYIQLEEIYKISYFDLY-LGIDGISIYFLLLTTMIMPISLIANWNSIDSKN 110 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 ++I L+LE++++ FL LD+LLFYIFFE+ L P+F++IG++G S+++ A++ FLY Sbjct: 111 VLSFVIIILLLETLLLAVFLVLDILLFYIFFESILPPLFLLIGLFGSSDKVRASFYLFLY 170 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSII---DLYAMSKFPFS--IQYWMWIAFFCSFAIKIPM 225 T GS+FML +I+ M SSI+ D A+SK +S Q +++ F SFA+K P Sbjct: 171 TLLGSLFMLLSIITM------SSIMGATDFDALSKANYSYVTQLFLFYGIFLSFAVKTPT 224 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 +TWL AHV++P AGS+ LAGI+LK+ YG R +LPL P A+ + V++ + +I Sbjct: 225 IFLNTWLLKAHVESPLAGSIILAGIVLKLSLYGIFRLILPLLPKATIDYTYVVYVIGVIT 284 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 I+YAS ++ DIK+LIAYSS++H + FS G+EGA+ L+HG VSS LF Sbjct: 285 ILYASFSTLRTIDIKELIAYSSVSHAAVYLLSAFSNTIQGIEGAITLGLAHGFVSSGLFI 344 Query: 346 CV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 CV GV+YDR TR I Y G+ MP + ++ + ++ N G P T FIGEF+ + +F+ Sbjct: 345 CVGGVLYDRSSTRLITYYRGMAQLMPIFCILFYILSLGNCGSPLTLNFIGEFMSLYGIFE 404 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK-VQQLKDLSLRERCMVYPIAVLTV 463 + + VLAS +V SA Y+++++ ++ FG +KDLS RE ++ + V Sbjct: 405 RMSILGVLASTSIVFSAAYTIFMFNRIAFGGQFSSYFFNYVKDLSKREFILLISLVTPAV 464 Query: 464 FFGIYPVPIRDTFSVPLSSIIEN 486 FFGIYP I D +S +I N Sbjct: 465 FFGIYPAVILDGLHYSVSGLIYN 487 >gi|118473357|ref|YP_886412.1| NADH dehydrogenase subunit M [Mycobacterium smegmatis str. MC2 155] gi|118174644|gb|ABK75540.1| NADH-quinone oxidoreductase, M subunit [Mycobacterium smegmatis str. MC2 155] Length = 529 Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 175/487 (35%), Positives = 275/487 (56%), Gaps = 34/487 (6%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTF 94 +AL +S + + V FD + +Q +E + WI F + Y LGVDGI++ LVVLT Sbjct: 36 LALAVSVLTLAVTAVVAIGFDPAAAQYQFVESHRWIPSFGTGYILGVDGIALALVVLTAV 95 Query: 95 LTPFCILSSWKSIQE-------NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 L P I++ W + + Y+ L +E MV+ + ++LD+LLFY+FFEA LIP Sbjct: 96 LVPLLIIAGWNDASRQTGLAGRSVQAYLALTLAVEGMVLMSLVALDILLFYVFFEAMLIP 155 Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF-- 205 M+ +IG +GG R AA KF LY FG + ML A++ + S D +A F F Sbjct: 156 MYFLIGGFGGENRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAGS---DAFAAGTFDFRE 212 Query: 206 --------------SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 +I ++++ F +FA+K P++PFH WLP+A V+A A +V + +M Sbjct: 213 IVAAVSSGEFAVNPAIMNFLFLGFMFAFAVKAPLWPFHRWLPDAAVEATPASAVLMMAVM 272 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 K+G +G +R+ L LFP AS YF PV+ L+ I I+Y +++++ QTD+ +LIAY+SI+H Sbjct: 273 DKVGTFGMLRYCLQLFPDASTYFRPVVITLAAIGIVYGAVLAIGQTDVMRLIAYTSISHF 332 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G++ +GIF G G+ M++HG+ ++ALF G + R +R I +YGG+ P Sbjct: 333 GFIILGIFVMTSQGQSGSTLYMINHGISTAALFLIAGFLVSRRGSRLIDSYGGVQKVAPV 392 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A +V +A + LPG + FI EFLV++ F VAV A+ +VLSA+Y LW Y+++ Sbjct: 393 LAGTFLVAGLATLSLPGLAPFISEFLVLIGTFTRYPVVAVFAATALVLSAVYILWTYQRM 452 Query: 432 VFGVSK---CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 + G + + + ++DL RE +V P+ L + GIYP P D ++ +E+ Sbjct: 453 MTGPVRDGIGDGDRPVRDLVPRELVVVAPLLALLLVLGIYPKPALDV----INPAVEHTL 508 Query: 489 LKTGYSD 495 G +D Sbjct: 509 TTIGQTD 515 >gi|307822938|ref|ZP_07653168.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacter tundripaludum SV96] gi|307735713|gb|EFO06560.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacter tundripaludum SV96] Length = 496 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 167/454 (36%), Positives = 272/454 (59%), Gaps = 14/454 (3%) Query: 41 STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFC 99 +TI F+ ++ S+++ ++ Q EY+ S Y LG+DG+S+ ++V+ T LT Sbjct: 37 TTIAFLLVCWLLSIYNAQDANLQFNEYFPLNPKLGSAYALGIDGLSMPMLVMATLLTSIA 96 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 +L+S+ ++ + + Y I L+LE ++G FL+ D LFYIF+E +LIP+F +IG WGG Sbjct: 97 LLASF-TVSSSVKGYHICILLLEFGMLGVFLAQDWALFYIFWEVTLIPLFFLIGRWGGKR 155 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCW---EKKTSSIIDLY-AMSKFPFSIQYWMWIAF 215 R A+ F LYT GS+FML +++ + E S + ++ A P Q + + F Sbjct: 156 RHTASLNFVLYTMGGSVFMLISLLAVSQYDLEHGGSLMSSMHQAAQDMPRIEQVLVLLGF 215 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 F +K+P+FP H WLP AHV+AP+ S+ L+GI+LKMG YG IR ++ + P A++ Sbjct: 216 VIGFGVKMPIFPLHGWLPLAHVEAPSPVSILLSGILLKMGAYGLIRAVV-MLPEAAKLLQ 274 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 P + FL L ++Y L++ Q+D+K ++AYSSI+HMG V +GI + ++G+ GA+ QM + Sbjct: 275 PFLIFLGLFGMLYGGLLAWRQSDLKAMVAYSSISHMGIVLLGIATLNEAGITGAVLQMTA 334 Query: 336 HGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGE 395 HGL++ ALF VG++Y+R HTR+I Y L+ MPR+AV M + +A MGLPG+ GFI E Sbjct: 335 HGLIAGALFLLVGLLYERTHTRNIQDYSSLIQVMPRFAVFMTLTLLAAMGLPGSVGFIAE 394 Query: 396 FLVIMSVFQNSNTVA------VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 ++ F++S +V V S +++ A Y++ + G K +++Q++DL Sbjct: 395 LYTLIGGFRSSTSVGLGLGVMVFFSVSILIGAAYAIRTISLLFTGPVK-PQMRQIEDLRA 453 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 E + VFFG+ P P+ D + +S + Sbjct: 454 PELLAAGILVTGIVFFGLLPAPLLDLSAATISQM 487 >gi|257453978|ref|ZP_05619254.1| NADH-quinone oxidoreductase subunit m [Enhydrobacter aerosaccus SK60] gi|257448643|gb|EEV23610.1| NADH-quinone oxidoreductase subunit m [Enhydrobacter aerosaccus SK60] Length = 528 Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 171/429 (39%), Positives = 256/429 (59%), Gaps = 15/429 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDM 134 S+HL +DG+S+L+V LT FL + SW I + + L VIG FL++DM Sbjct: 86 VSFHLAIDGLSLLMVSLTAFLGMMAVACSWGEITRRVGFFHLNLLWSLGGVIGVFLAIDM 145 Query: 135 LLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV--VMCW 187 LF+ F+E L+P++ +I +WG G + YAA KFF+YT + ML I+ VM Sbjct: 146 FLFFFFWEMMLVPIYFLIAIWGHNAIGGKTKEYAATKFFIYTQASGLIMLIGILILVMIH 205 Query: 188 EKKTSSI----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T I +DL + QY + + FF FA+K+P+FP H WLP+AH QAPTAG Sbjct: 206 ASTTGQITFNYMDLLGTDLGKW--QYPIMLMFFIGFAVKLPIFPLHGWLPDAHAQAPTAG 263 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAGI++K YG +RF+LPLFP AS FAP+ L I I Y + ++ +Q DIK+L+ Sbjct: 264 SVDLAGILIKTAAYGLLRFVLPLFPEASAQFAPIAITLGGIGIFYGAWLAFMQQDIKRLL 323 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AY+SI+HMG+V + +++G +G M QML+HGL S+ALF G +Y+RLHTRD+ G Sbjct: 324 AYTSISHMGFVVLALYAGTLISFQGLMIQMLAHGLSSAALFIMSGQLYERLHTRDLSQMG 383 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ M Y ++M F A +G+PGT FIGEFL+++ F + V A+F +V++ LY Sbjct: 384 GMWGQMRYYPPLLMFFAAALLGIPGTGNFIGEFLILLGSFASHPVAVVFATFSLVVAGLY 443 Query: 424 SLWLYRKVVFG--VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLS 481 +L + K +FG + EK+ ++D++ RE ++ + ++ G+YP DT + Sbjct: 444 ALIMIYKALFGTPTATIEKMSPMRDINAREAAILLVLGFGLLWLGLYPQSFLDTSDHSMH 503 Query: 482 SIIENYTLK 490 I + Y ++ Sbjct: 504 WISQAYHVQ 512 >gi|254432773|ref|ZP_05046476.1| NADH dehydrogenase i domain protein [Cyanobium sp. PCC 7001] gi|197627226|gb|EDY39785.1| NADH dehydrogenase i domain protein [Cyanobium sp. PCC 7001] Length = 528 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 178/507 (35%), Positives = 282/507 (55%), Gaps = 26/507 (5%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRSSF 62 P+LS P +I F G G++ + ALGI+ F+F++ + + +D Sbjct: 7 PWLSAAILFPIGAALLIPFVPDKGDGKQVRW-YALGIALTTFLFTVAGYLNGYDPAVEGL 65 Query: 63 QMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E W+ D ++ +G DG+S+ L++LT+F+T L++W +F+ + FL+L Sbjct: 66 QLVERVEWLPDLGLAWSVGADGLSMPLILLTSFITALAALAAWPV---SFKPKLFYFLLL 122 Query: 122 --ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + I F DMLLF++ +E LIP+++++ +WGG +R YAA KF LYT S+F+L Sbjct: 123 AMDGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLFIL 182 Query: 180 FAIVVMCWEKKTSSIIDLYAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + M + +S M+K F Q + +F +K+P+ P HTWLP+AH + Sbjct: 183 IVGLAMAFYGGDTSFEYTTLMAKEFGTRFQVICYAGLLIAFGVKLPIVPLHTWLPDAHGE 242 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + LAGI+LKMGGY +RF + L P A FAP++ L ++ IIYA+L S Q + Sbjct: 243 ATAPVHMLLAGILLKMGGYALLRFNVQLLPEAHAQFAPLLVVLGVVNIIYAALTSFAQRN 302 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR HT Sbjct: 303 LKRKIAYSSISHMGFVLIGIGSFSDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLQ 362 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ M + + + +A++ LPG SGF+ E +V + + +A+ Sbjct: 363 LDEMGGVGQQMRKMFALWTICALASLALPGMSGFVSELMVFVGFVTSEAYTLSFRVVMAI 422 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCE--KVQQLKDLSLRE----RCMVYPIAVLTVFF 465 LA+ GV+L+ +Y L + R++ FG E L D RE C++ PI V Sbjct: 423 LAAVGVILTPIYLLSMLREIFFGKENAELSSHTHLVDAEPREIYVISCLLVPI----VGI 478 Query: 466 GIYPVPIRDTFSVPLSSIIENYTLKTG 492 G+YP + D++ + ++++ TL G Sbjct: 479 GLYPRIMTDSYRASIEALVQRETLAMG 505 >gi|282860731|ref|ZP_06269797.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces sp. ACTE] gi|282564467|gb|EFB70003.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces sp. ACTE] Length = 523 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 181/517 (35%), Positives = 289/517 (55%), Gaps = 31/517 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M+ P L+ LP +G V ++ + GRR+ AL S + + V++ F+ G Sbjct: 1 MSFPLLTATAALPAVGAIV---TAAVPAGRRTAAKWTALLFSLGTLVLAGLVFARFEPGG 57 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---------E 109 +Q+ E + WI D+ Y LGVDGI + L+ LT L PF +L+ W Sbjct: 58 DRYQLTESHPWIADFGVRYDLGVDGIGVALLGLTALLIPFVLLAGWHDADPLETHSSRWR 117 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSE----- 159 + + L++E+MVI +F + D+ LFYI FEA LIPM+ +IG +G GSE Sbjct: 118 PTQGFFALILMVEAMVILSFEATDVFLFYILFEAMLIPMYFLIGGFGDRAHAGSEENAAA 177 Query: 160 -RIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPF--SIQYWMWI 213 R YAA KF LY G + ML A++ V+ S I + A S + W+++ Sbjct: 178 QRSYAAVKFLLYNLAGGLIMLAAVIGLYVVAGSFSLSEIAEARANGSLEMAGSTEKWLFL 237 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K P++P HTWLPNA +A T +V + ++ K+G + +R+ L LFP AS++ Sbjct: 238 GFFFAFAVKAPLWPLHTWLPNAMGEATTPVAVLITAVVDKVGTFAMLRYCLQLFPEASKW 297 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 PVI L+L++IIY +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G GA M Sbjct: 298 ATPVILVLALVSIIYGALLAVGQRDIKRLIAYASISHFGFIVLGIFAMTSQGQSGATLYM 357 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG+ ++AL G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 358 VNHGISTAALMLVAGFLITRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFV 417 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFLV++ F V ++A+ G+VL+ALY L LY++ + G + E V+ + DL +RE Sbjct: 418 SEFLVLVGAFSAYPVVGIVATVGIVLAALYVLVLYQRTMTGPVR-ESVRAMPDLRVRELA 476 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 + P+ L +F G++P P+ D + + +++ K Sbjct: 477 VALPLIALLIFLGVFPKPVTDVVNPAVQHTMQDVQKK 513 >gi|86609453|ref|YP_478215.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501723|sp|Q2JK43|NU4C2_SYNJB RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 2; AltName: Full=NAD(P)H dehydrogenase I, chain 4 2; AltName: Full=NDH-1, chain 4 2 gi|86557995|gb|ABD02952.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 534 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 268/459 (58%), Gaps = 25/459 (5%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 +D G++ Q++E Y W+ S+ +G DG+S+ L++LT F+T IL++W + R Sbjct: 72 YDPGQTGLQLLERYTWVPQVGLSWSVGADGLSMPLILLTAFITTLAILAAWP-VTLKPRL 130 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 + L + IG F DMLLF++ +E LIP+++++ +WGG+ R+YAA KF LYT Sbjct: 131 FYFLMLAMYGGQIGVFAVQDMLLFFLMWELELIPVYLLLSIWGGANRLYAATKFILYTAL 190 Query: 174 GSIFMLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 S+F+L A + M + + + + DL A +P + Q M+ AF ++ +K+P+FP HTW Sbjct: 191 SSLFILVAGLAMAFYGDPISFDMTDL-AHKTYPLTFQLLMYGAFLIAYGVKLPIFPLHTW 249 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A + LAGI+LKMGGY +R + P A YFAPV+ L ++ II+A+L Sbjct: 250 LPDAHGEATAPVHMLLAGILLKMGGYALMRMNAGMLPDAHLYFAPVLIVLGVVNIIFAAL 309 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 S Q ++K+ IA SSI+HMG+V IGI S + G+ GAM QM+SHGL+ ++LFF VG Y Sbjct: 310 TSFAQRNLKRKIACSSISHMGFVLIGIGSLTEIGMSGAMLQMISHGLIGASLFFLVGATY 369 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---- 407 DR HT ++ GG+ MP+ + ++A++ LPG SGF+ E +V + + Sbjct: 370 DRTHTLELEEMGGVGLKMPKIFSMFTACSLASLALPGMSGFVAEIMVFIGMATTDAYSLP 429 Query: 408 ---TVAVLASFGVVLSALYSLWLYRKVVFGVSKCE--KVQQLKDLSLRE----RCMVYPI 458 V LA+ GV+L+ +Y L + R++ FG E + ++L D RE C++ PI Sbjct: 430 FRLVVVFLAAVGVILTPIYLLSMLRQIFFGPENKELTEHEELVDAEPREVFIIACLLIPI 489 Query: 459 AVLTVFFGIYP---VPIRDTFSVPLSSIIENYTLKTGYS 494 + G+YP + D + L +++ +TG + Sbjct: 490 ----IGIGLYPKLVTSLYDQSTNALVALLRQELPQTGET 524 >gi|197935764|ref|YP_002213607.1| NADH dehydrogenase subunit 4 [Cordyceps brongniartii] gi|156122221|gb|ABU50180.1| NADH dehydrogenase subunit 4 [Cordyceps brongniartii] Length = 498 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 172/457 (37%), Positives = 280/457 (61%), Gaps = 4/457 (0%) Query: 30 RRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLV 89 S +AL S IN SL + +F+ + FQ I+ ++ + F Y LG+DGISI + Sbjct: 41 NTSIKSIALITSIINLTTSLIKFILFNSSTNQFQYIQEHYNVQLFDIY-LGIDGISIYFL 99 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 +LTT + P +LS+W SI+EN + Y+I L+LE++++ F +LD++LFYIFFE+ L P+F Sbjct: 100 LLTTIIMPIALLSNWDSIKENVKSYLIIMLLLETLLLAVFKALDIMLFYIFFESILPPLF 159 Query: 150 VIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 ++IG++G ++ A+Y FLYT +GS+F+L +I+ + ++ L+ ++ F ++ Q Sbjct: 160 ILIGIFGSDNKVNASYYLFLYTLWGSLFLLLSILSISSIMGSTDFDTLFKLN-FEYTTQV 218 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 +++I F +FA+K P + WL AHV++P GS+ LAGI+LK+ YG R +LP+ P Sbjct: 219 FLFIGIFIAFAVKTPTIFLNNWLLKAHVESPLGGSIVLAGIVLKLSLYGIFRLILPMLPK 278 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 AS + VI+ +++I IIYAS ++ TDIK+LIAYSS+ H IG FS G+EG+ Sbjct: 279 ASLDYTFVIYTIAVITIIYASFSTLRTTDIKELIAYSSVCHAAVYLIGAFSNTIQGLEGS 338 Query: 330 MFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 + L+HG VSS LF C GV+YDR TR IF Y G+ MP +A++ + + N G P Sbjct: 339 IILGLAHGFVSSGLFICAGGVLYDRTGTRSIFFYRGVAQLMPIFAILFFILALGNCGAPL 398 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDL 447 T FIGEF+ + + + + V A +V SA Y+++++ + FG + + + + D+ Sbjct: 399 TLNFIGEFMSLYGIIERLPVLGVFACSSIVFSAAYTIYMFNRTAFGGTFTRFLDESVYDV 458 Query: 448 SLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 + RE +++ + TV GIYP I + ++++I Sbjct: 459 NKREFILLFILVAFTVILGIYPSIILNVLDYSMNNLI 495 >gi|41582341|gb|AAS07955.1| NADH-quinone oxidoreductase, M subunit [uncultured marine bacterium 463] Length = 510 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 173/414 (41%), Positives = 260/414 (62%), Gaps = 11/414 (2%) Query: 68 YHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI 126 + WI F S LG+DG+S+L+++LT L I+SSW I+ + L + VI Sbjct: 72 HEWIPRFGISLELGMDGLSLLMLILTLALGAIAIVSSWNEIEFKPGLFQANLLWTLTGVI 131 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 G FL+LD+ LF++F+E LIPM+++I +WG R YAA KFF++T + ML +I+V+ Sbjct: 132 GVFLALDLFLFFLFWEVMLIPMYLLIAIWGHENRGYAAMKFFIFTQVSGLLMLLSIIVLA 191 Query: 187 WEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + I DL + + M + FF +F +K+P FPFHTWLP+AH QAPT Sbjct: 192 VQGAGDGDISFSYGDLLGSAPTGKAGMLTM-LGFFLAFTVKLPGFPFHTWLPDAHTQAPT 250 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LAGI+LK G YG +RF +PLFP AS FAP+ L + IIY ++++ Q+D K+ Sbjct: 251 AGSVLLAGILLKTGAYGLLRFCIPLFPEASMQFAPIAMTLGTVGIIYGAVLAFAQSDFKR 310 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSS++HMG+V +G+++ ++GA+ QM++HG+ ++ALF G + RLHTRD+ Sbjct: 311 LVAYSSVSHMGFVLLGLYAWNSLALQGAIMQMVAHGVSTAALFMMAGALQHRLHTRDMNR 370 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GGL +N PR M F +A++GLPG F+ EFLV+ +F S + A+ G++ +A Sbjct: 371 MGGLWYNAPRMGACAMFFAVASLGLPGMGNFVAEFLVLAGLFAVSPWMTAAAAIGLITAA 430 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRE-RCMVYPIAVLTVFFGIYPVPIRD 474 +YSLWL +K G K ++ ++L+D RE MV +A L ++ G+YP P+ D Sbjct: 431 IYSLWLMQKTFQG--KPDEERKLQDFDRREMGAMVIMMAAL-LWLGLYPQPVFD 481 >gi|126434133|ref|YP_001069824.1| NADH dehydrogenase subunit M [Mycobacterium sp. JLS] gi|126233933|gb|ABN97333.1| NADH dehydrogenase subunit M [Mycobacterium sp. JLS] Length = 519 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 176/497 (35%), Positives = 286/497 (57%), Gaps = 29/497 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M +P+LS++ P +G V++ RR+ VAL +S++ + V FD G Sbjct: 1 MVIPWLSVLWAAPIVGAGVVML-----VPRRTLAKWVALAVSSVALAVTAVVAVGFDPGG 55 Query: 60 SSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSI-----QENFRE 113 +Q +E WI F + Y LGVDGI++ L+VLT L P I++ W + + Sbjct: 56 EQYQFVESRRWIPSFGTGYILGVDGIALALIVLTAVLVPLLIVAGWNDADRAPQRRSVHT 115 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG---SERIYAAYKFFLY 170 Y+ L +E MV + ++LD+LLFY+FFEA LIPM+ +IG +G +R AA KF LY Sbjct: 116 YLALTLAVEGMVFMSLVALDVLLFYVFFEAMLIPMYFLIGGFGSGPSQDRSKAAVKFLLY 175 Query: 171 TFFGSIFMLFAIVVM--------CWEKKT---SSIIDLYAMSKFPF--SIQYWMWIAFFC 217 FG + ML A++ + +E T +I+ A F ++ M++ F Sbjct: 176 NLFGGLIMLAAVIGLYVTTAASDAFEGGTFDFRAIVAAVAAGDFVVNPAVLNLMFLGFMF 235 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K P++P H WLP+A V+A A +V + +M K+G +G +R+ L LFP A+ F P+ Sbjct: 236 AFAVKAPLWPLHRWLPDAAVEATPASAVLMMAVMDKVGTFGMLRYCLQLFPDAATLFRPL 295 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 I L+++ I+Y ++V++ QTD+ +LIAY+SI+H G++ +GIF G G+ M++HG Sbjct: 296 IITLAVVGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILGIFVMTSQGQSGSALYMVNHG 355 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 + ++ALF G + + +R I +YGG+ P A +V +A + LPG + FI EFL Sbjct: 356 ISTAALFLIAGFLVSQHGSRLIASYGGVQKVAPVLAGTFLVAGLATLSLPGLAPFISEFL 415 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 V++ F +AV+A+ +VLSA+Y LW+Y++++ G + + ++L+DL RE +V P Sbjct: 416 VLIGTFTRYPVLAVVAATALVLSAIYVLWMYQRMMTGPVR-DGNERLRDLVPRELAVVTP 474 Query: 458 IAVLTVFFGIYPVPIRD 474 + L + G+YP P D Sbjct: 475 LIALLLVLGVYPKPALD 491 >gi|71733152|ref|YP_271956.1| NADH dehydrogenase subunit 4 [Montastraea faveolata] gi|71043576|dbj|BAE16235.1| NADH dehydrogenase subunit 4 [Montastraea faveolata] Length = 479 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 191/425 (44%), Positives = 272/425 (64%), Gaps = 6/425 (1%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTTFLTPFCILSSWK 105 +L W FD G FQ +E W + L +DG+S+ ++LTTFL P CIL S K Sbjct: 41 ALVSWGGFD-GEGHFQFLELVEWGSFLAWGPLPFALDGVSLFFLLLTTFLIPVCILISPK 99 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAA 164 S + F+E+++ LE +++G FL D+ LFYIFFE LIPMF +IG+WG E++ A+ Sbjct: 100 STKVLFKEFLLCLFFLEILLVGVFLVFDLFLFYIFFEGVLIPMFFLIGIWGSREEKVRAS 159 Query: 165 YKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 + FF +TF GS+F F I+ + T++ I L +K S+Q W + F SFA+K+P Sbjct: 160 FYFFFFTFAGSVFFFFVILFLYQSTGTTNYI-LLLNTKLSLSVQKWALVGVFLSFAVKLP 218 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + PFH WLP AHV+AP AGSV LAGI+LK+GGYG +RF PLFP AS Y++PVI S+I Sbjct: 219 LVPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGLLRFSWPLFPEASFYWSPVIVCFSVI 278 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 A++Y L++ Q D K+L+AYSS+AHMG V +GIF+ + G+ GA+F ML+HG VSSALF Sbjct: 279 AVVYGGLMTCRQIDFKRLVAYSSVAHMGLVPLGIFTHIMEGLVGAVFLMLAHGFVSSALF 338 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 V +YDR HTR I Y GL MP +AV M+V +++NMGLP + F+GEF +++ F+ Sbjct: 339 IGVTFLYDRHHTRLIKYYRGLTLTMPLFAVSMLVLSLSNMGLPLSCNFVGEFFSLLAAFK 398 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 V L FGV+ SA+YSL L+ ++ FG + +DL+ +E ++P ++ Sbjct: 399 YYYGVGALVVFGVLFSAIYSLSLFNRISFG-GGSNYLLFNRDLNRQEGFTMFPFLIIIFL 457 Query: 465 FGIYP 469 G+ P Sbjct: 458 GGVVP 462 >gi|254434023|ref|ZP_05047531.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Nitrosococcus oceani AFC27] gi|207090356|gb|EDZ67627.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Nitrosococcus oceani AFC27] Length = 478 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 161/441 (36%), Positives = 272/441 (61%), Gaps = 11/441 (2%) Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 G+ ++ + WI +F +HL +DG+S+LL +LT FL +++SW I+ + Sbjct: 42 NGQGAWLITLDRPWIPHFGVRFHLALDGLSLLLALLTCFLGLMAVVASWTEIKYRIGFFH 101 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L + + V+G F++LD+ LF++F+E L+PM+ +I +WG R A++KFF++T G Sbjct: 102 FNLLWVLAGVLGVFMALDLFLFFVFWEVMLVPMYFLIAIWGHEHRHPASFKFFIFTHSGG 161 Query: 176 IFMLFAIVVMCWEKK------TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 + +L AI+ + W T S +DL S P +W+ + FF +F IK+P P H Sbjct: 162 LLLLIAILELAWTHHQNTGELTFSYLDLLGASPDP-ETAFWIMLGFFIAFTIKLPAVPLH 220 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 +WLP+AH QAPT GSV LAG++LK G YG +RF++PLFP+A+ FAPV + ++ I+Y Sbjct: 221 SWLPDAHTQAPTGGSVILAGVLLKTGAYGLLRFVVPLFPVAAAEFAPVAMLMGVMGILYG 280 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 ++++ Q D+K+LIAYSSI+HMG+V +G+F+ ++GA+ QML+HG+ + ALF G Sbjct: 281 AVLAFAQQDVKRLIAYSSISHMGFVLLGVFAWNAVALQGAVIQMLAHGISAGALFMIAGA 340 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + +RLHTR++ GGL PR A + + F +A +GLPG F+GEFLV++ ++ S Sbjct: 341 LQERLHTRNMRRMGGLWAQAPRIAAISLFFAVAALGLPGLGNFMGEFLVLLGTYRASVPF 400 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A + G++L+ +Y+L + +K + G + E+ + D S ++ + + ++ + G+YP Sbjct: 401 AAAGALGLILAVVYALIIVQKTLHG--EPEEQRHFTDFSTKDMVAMGTMILILFWLGLYP 458 Query: 470 VPIRDTFSVPLSSIIENYTLK 490 P+ D + P ++ T++ Sbjct: 459 QPVFD-MAHPALEGLQQLTME 478 >gi|156743322|ref|YP_001433451.1| proton-translocating NADH-quinone oxidoreductase subunit M [Roseiflexus castenholzii DSM 13941] gi|156234650|gb|ABU59433.1| proton-translocating NADH-quinone oxidoreductase, chain M [Roseiflexus castenholzii DSM 13941] Length = 507 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 174/483 (36%), Positives = 288/483 (59%), Gaps = 18/483 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 +LP +SI +LP LG +L + GV+LG S + +L V +FD R+ Sbjct: 3 SLPLVSITIWLPALGALTVLALPRENVAAQR--GVSLGASLLALAAALGVAFLFDPARAG 60 Query: 62 FQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM+E W+ + SY + VDGIS+ LV+LT +TP +++SW +++ R + L+ Sbjct: 61 FQMVESVAWVPSWGISYTVSVDGISLWLVLLTALVTPVALVASWGTVERQERAFHALVLL 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L S + G F + DMLLFY+FFE +LIP ++IG+WGG+ER YAA KFF YTF GS+F+L Sbjct: 121 LASGLFGVFTAQDMLLFYVFFEFTLIPTALLIGIWGGAERRYAAVKFFAYTFSGSVFLLL 180 Query: 181 AIVVM---------CWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 ++ + + T++I+ + + + ++ FF FA+K P++PFH Sbjct: 181 GMIGLYLLHGQATGVYTFDTATILASLQLGTLRLDAGAERLLFGLFFIGFAVKAPIWPFH 240 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TW+ AH +AP++G V + G+++K+G YG IR+ + FP + + AP + L++I I+YA Sbjct: 241 TWMTTAHAEAPSSGVVDVIGLLIKIGAYGLIRYNVQFFPATAAWAAPAVGVLAVIGILYA 300 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 + ++ QTD+K+L+AY+S++H+G + +GIF+ G+ GA+ M++ L + ALF VG+ Sbjct: 301 AWIAYQQTDMKRLLAYASVSHLGLIVLGIFALNVQGIAGAVAHMVNSALTTGALFLVVGM 360 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-- 407 + R +R++ ++GGL P + + + ++GLPG +GFI EF+V+ +++ Sbjct: 361 LAARRGSRELKSFGGLWKTTPWLGSLTFLLVLGSIGLPGLNGFISEFVVLQGSWRSPGLG 420 Query: 408 -TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 A+ A GVVL+A+Y L +YR G + E + Q D+ RE ++ +A V FG Sbjct: 421 WRYALPAILGVVLAAVYLLHMYRTAFMGDTPPE-LAQAPDVRPRELALLIVLATPVVVFG 479 Query: 467 IYP 469 +YP Sbjct: 480 LYP 482 >gi|186681433|ref|YP_001864629.1| NAD(P)H-quinone oxidoreductase subunit 4 [Nostoc punctiforme PCC 73102] gi|186463885|gb|ACC79686.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nostoc punctiforme PCC 73102] Length = 562 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 173/443 (39%), Positives = 264/443 (59%), Gaps = 16/443 (3%) Query: 4 PFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRSS 61 P+L+ + LP + +I + G R + ALG+ +F + W +D +S Sbjct: 7 PWLTAIVLLPLVASLLIPVLPDKDGKLVRWY---ALGVGIADFALMCYAFWKHYDASSAS 63 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ++E Y W+ ++ + VDG+S+ LV+L F+T I S+W+ + R + LV Sbjct: 64 FQLVESYAWMPQLGLNWAVSVDGLSVPLVLLAGFVTTLSIFSAWQ-VDRRPRLFYFLMLV 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L S +G F++ D+LLF+I +E LIP+++++ +WGG R YAA KF LYT SIF+L Sbjct: 123 LYSAQVGVFVAKDLLLFFIMWEVELIPVYLLVCIWGGQRRRYAATKFLLYTAAASIFILV 182 Query: 181 AIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A + M + D+ A++ ++P +Q ++ +F +K+ +FP HTWLP+AH + Sbjct: 183 AALAMGLYGGGDTTFDITALASKEYPLGLQLLLYAGLLIAFGVKLAVFPMHTWLPDAHGE 242 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + S+ LAG++LKMGGYG IR L L P A YFAPV+ L ++ IIY +L S QT+ Sbjct: 243 ASSPVSMILAGVLLKMGGYGLIRLNLELLPDAHIYFAPVLAILGVVNIIYGALNSFAQTN 302 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ +AYSSI+HMG+V +GI S G+ GAM QM+SHGL++S LFF GV YDR HT Sbjct: 303 MKRRLAYSSISHMGFVLLGIASFTDLGINGAMLQMISHGLIASVLFFLAGVTYDRTHTMV 362 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVAV- 411 + GG+ MP+ + + MA++ LPG SGF GE V + + + TV V Sbjct: 363 MKDMGGIGQAMPKVFALFTISAMASLALPGMSGFAGELSVFVGMTSSDVYSSTFCTVTVF 422 Query: 412 LASFGVVLSALYSLWLYRKVVFG 434 LA+ GV+L+ +Y L + R+V +G Sbjct: 423 LAAVGVILTPIYLLSMLREVFYG 445 >gi|328884324|emb|CCA57563.1| NADH-ubiquinone oxidoreductase chain M [Streptomyces venezuelae ATCC 10712] Length = 523 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 176/516 (34%), Positives = 289/516 (56%), Gaps = 29/516 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L++ +P +G IL ++ R + +AL +S + V+ F+ G Sbjct: 1 MSFPLLTVTAAVPAVGA--ILTAAVPAARRTAAKWLALLVSLATLALAAVVFVRFEPGGE 58 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSW------KSIQENFRE 113 +Q+ E + WI D+ Y LGVDGI + L+ LT L PF +L+ W ++ + +R Sbjct: 59 RYQLTESHAWIKDFGVRYELGVDGIGVALIALTALLIPFIVLAGWHDADPLETSSKRWRP 118 Query: 114 ---YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GSE 159 + L++E+MVI +F + D+ LFYI FEA LIPM+ +IG +G ++ Sbjct: 119 TQGFFALILMVEAMVILSFEATDVFLFYILFEAMLIPMYFLIGGFGDRAHSGSDENAAAQ 178 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPF--SIQYWMWIA 214 R YAA KF LY G + ML A++ V+ + I + A S + W+++ Sbjct: 179 RSYAAVKFLLYNLVGGLIMLAAVIGLYVVAGNFSLTEIAEARANGSLEMATSTERWLFLG 238 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF +FA+K P++P HTWLPNA +A +V + ++ K+G + +RF L LFP AS++ Sbjct: 239 FFFAFAVKAPLWPLHTWLPNAMGEATAPVAVLITAVVDKVGTFAMLRFCLGLFPEASKWA 298 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P I L+LI+I+Y +L+++ Q DIK+L+AY+SI+H G++ +GIF+ G GA M+ Sbjct: 299 TPAIVVLALISIVYGALLAVGQRDIKRLVAYASISHFGFIILGIFAMTTQGQSGATLYMV 358 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HG+ ++AL G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 359 NHGISTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFVS 418 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFLV++ F V+A+ G+VL+ALY+L LY++ + G K E+V+ L DL RE + Sbjct: 419 EFLVLVGTFARYPVAGVIATTGIVLAALYTLVLYQRTMTGPVK-EEVRTLPDLRARELAV 477 Query: 455 VYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 V P+ + +F G++P P+ D + + + + K Sbjct: 478 VVPLIAVLIFLGVFPKPLTDVVNPAVQHTMSDVQQK 513 >gi|284992913|ref|YP_003411467.1| proton-translocating NADH-quinone oxidoreductase subunit M [Geodermatophilus obscurus DSM 43160] gi|284066158|gb|ADB77096.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geodermatophilus obscurus DSM 43160] Length = 545 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 168/475 (35%), Positives = 273/475 (57%), Gaps = 44/475 (9%) Query: 55 FDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD G FQ+ WI D+ + LGVDGI++++++L L P +L+SW+ R Sbjct: 54 FDAGGERFQLTTSVSWIPDFGVDFALGVDGIALVMLLLIGVLVPVVVLASWRDEPTGHRS 113 Query: 114 YMIAF---LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 F L+LES+++G F + D+ LFY+FFEA L+PM+ +IG +GG R YAA KFFLY Sbjct: 114 VKTFFAWLLLLESLMVGVFAATDVFLFYVFFEAMLVPMYFLIGSFGGPRRQYAAVKFFLY 173 Query: 171 TFFGSIFMLFAI----VVMCWE--KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 + G + ML A+ VV E + T + L + P +Q +++ FF +FAIK P Sbjct: 174 SLVGGLVMLAAVIGLYVVSAAELGEGTFAFDALRGIEIDP-GVQKLLFLGFFVAFAIKAP 232 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + PFHTWLP++ +AP GSV L G++ K+G +G +R+ LPLFP AS+ AP + L++ Sbjct: 233 LVPFHTWLPDSGAEAPIGGSVLLVGVLDKVGTFGFLRYCLPLFPDASRDLAPYVLALAVA 292 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 ++YA+L++M Q+D+K+L++Y+SIAH G++ +GIF+ G++ M++HG+ + LF Sbjct: 293 GVLYAALLAMGQSDMKRLVSYTSIAHFGFIALGIFAFTTEAATGSVLYMVNHGIATGLLF 352 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 VG++ R +R++ YGG+ P A V +V +A++ LPGT+ F+ EFLV++ F Sbjct: 353 LVVGMLIARGGSREVGDYGGVAAQAPLLAGVFLVAGLASLALPGTNSFVSEFLVLIGSFP 412 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ---------------------- 442 VLA+ G+VL+ALY L LY++ + G + ++ Sbjct: 413 TRPVFTVLATVGIVLAALYVLLLYQRTMHGPPRGVLLEPSPGTPAPATGGGGGATAATAT 472 Query: 443 -----------QLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 +++DLS RE + P+ L + G+YP P+ D +++ + + Sbjct: 473 LEAPAAAPARLRVRDLSRRELAVAAPMVALVIALGVYPQPLIDLIEPAVAATMSD 527 >gi|77164625|ref|YP_343150.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus oceani ATCC 19707] gi|76882939|gb|ABA57620.1| NADH dehydrogenase subunit M [Nitrosococcus oceani ATCC 19707] Length = 493 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 161/441 (36%), Positives = 272/441 (61%), Gaps = 11/441 (2%) Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 G+ ++ + WI +F +HL +DG+S+LL +LT FL +++SW I+ + Sbjct: 57 NGQGAWLITLDRPWIPHFGVRFHLALDGLSLLLALLTCFLGLMAVVASWTEIKYRIGFFH 116 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L + + V+G F++LD+ LF++F+E L+PM+ +I +WG R A++KFF++T G Sbjct: 117 FNLLWVLAGVLGVFMALDLFLFFVFWEVMLVPMYFLIAIWGHEHRHPASFKFFIFTHSGG 176 Query: 176 IFMLFAIVVMCWEKK------TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 + +L AI+ + W T S +DL S P +W+ + FF +F IK+P P H Sbjct: 177 LLLLIAILELAWTHHQNTGELTFSYLDLLGASPDP-ETAFWIMLGFFIAFTIKLPAVPLH 235 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 +WLP+AH QAPT GSV LAG++LK G YG +RF++PLFP+A+ FAPV + ++ I+Y Sbjct: 236 SWLPDAHTQAPTGGSVILAGVLLKTGAYGLLRFVVPLFPVAAAEFAPVAMLMGVMGILYG 295 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 ++++ Q D+K+LIAYSSI+HMG+V +G+F+ ++GA+ QML+HG+ + ALF G Sbjct: 296 AVLAFAQQDVKRLIAYSSISHMGFVLLGVFAWNAVALQGAVIQMLAHGISAGALFMIAGA 355 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + +RLHTR++ GGL PR A + + F +A +GLPG F+GEFLV++ ++ S Sbjct: 356 LQERLHTRNMRRMGGLWAQAPRIAAISLFFAVAALGLPGLGNFMGEFLVLLGTYRASVPF 415 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A + G++L+ +Y+L + +K + G + E+ + D S ++ + + ++ + G+YP Sbjct: 416 AAAGALGLILAVVYALIIVQKTLHG--EPEEQRHFTDFSTKDMVAMGTMILILFWLGLYP 473 Query: 470 VPIRDTFSVPLSSIIENYTLK 490 P+ D + P ++ T++ Sbjct: 474 QPVFD-MAHPALEGLQQLTME 493 >gi|113474510|ref|YP_720571.1| NAD(P)H-quinone oxidoreductase subunit 4 [Trichodesmium erythraeum IMS101] gi|122965217|sp|Q118H6|NU4C1_TRIEI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 1; AltName: Full=NAD(P)H dehydrogenase I, chain 4 1; AltName: Full=NDH-1, chain 4 1 gi|110165558|gb|ABG50098.1| proton-translocating NADH-quinone oxidoreductase, chain M [Trichodesmium erythraeum IMS101] Length = 527 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 173/506 (34%), Positives = 286/506 (56%), Gaps = 30/506 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P+L+ + P + ++ ++ + +G+ I + F + +D Sbjct: 4 NFPWLTTIILFPIVASLLLPIIPDKDGKTVRWYSLIVGLIDFAIIIAAFC-TGYDVNNPE 62 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y W+ ++ +G DG+S+ L++LT F+T I+++W +F+ + FL+ Sbjct: 63 LQLVESYPWVPQLDLNWSVGADGLSMPLIILTGFITTLAIMAAWPV---SFKPKLFYFLM 119 Query: 121 LE--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L I F DMLLF++ +E L+P+++I+ +WGG R+YAA KF LYT GS+F+ Sbjct: 120 LAMYGGQIAVFAVQDMLLFFLVWELELVPVYLILSIWGGKRRLYAATKFILYTAGGSLFI 179 Query: 179 LFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L A + M + T S + A+ + F++Q ++ AF ++A+K+P+FP HTWLP+AH Sbjct: 180 LIAALTMAFYGDTVSFDMRTIALKDYAFNLQLLLYAAFLIAYAVKLPIFPLHTWLPDAHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +R + P A FAPV+ L ++ I+YA+L S Q Sbjct: 240 EATAPAHMLLAGILLKMGGYALLRMNAGMLPDAHAVFAPVLVILGVVNIVYAALTSFAQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IG+ S G+ GA+ QM+SHGL+ ++LFF VG YDR HT Sbjct: 300 NLKRKIAYSSISHMGFVLIGMASFTDIGLSGAVLQMISHGLIGASLFFLVGATYDRTHTL 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT--------V 409 + GG+ M + + +MA++ LPG SGF+ E +V + F S+ V Sbjct: 360 ILDEMGGVGQKMKKVFAMWTTCSMASLALPGMSGFVAEVMVFIG-FATSDAYSSTFKVLV 418 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLTV 463 L++ GV+L+ +Y L + R++++G + V+ LKD RE C++ PI + Sbjct: 419 IFLSAVGVILTPIYLLSMLREILYGPENKKLVEHEVLKDAEPREVFIIGCLLVPI----I 474 Query: 464 FFGIYP---VPIRDTFSVPLSSIIEN 486 G+YP I D +V L++ + + Sbjct: 475 GIGLYPKIVTQIYDATTVQLTARLRD 500 >gi|126657754|ref|ZP_01728908.1| NAD(P)H-quinone oxidoreductase subunit D [Cyanothece sp. CCY0110] gi|126620971|gb|EAZ91686.1| NAD(P)H-quinone oxidoreductase subunit D [Cyanothece sp. CCY0110] Length = 526 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 175/508 (34%), Positives = 285/508 (56%), Gaps = 34/508 (6%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N P+L+ + P + +F+ + G R + AL + I+F ++ ++ +D Sbjct: 5 NFPWLTTIILFPIVAALFIPIIPDKDGKTVRWY---ALTVGLIDFAIIVYAFYTGYDLSN 61 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q++E Y W+ + + +G DG+++ L++LT F+T +++W F+ + F Sbjct: 62 PNLQLVESYAWVPELDLKWSVGADGLAMPLILLTGFITTLATMAAWPV---TFKPKLFYF 118 Query: 119 LVLE--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L I F DMLLF++ +E L+P+++I+ +WGG R+YAA KF LYT GS+ Sbjct: 119 LMLAMYGGQIAVFAVQDMLLFFLVWELELVPVYLILSIWGGKRRLYAATKFILYTAGGSL 178 Query: 177 FMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F+L + M + T + + A P ++Q +++ F ++ +K+P+FP HTWLP+A Sbjct: 179 FILVGALTMAFFGDTVTFDMSAIAAKDIPLNLQLFLYAGFLIAYGVKLPIFPLHTWLPDA 238 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY +R + P A YFAPV+ L ++ IIYA+L S Sbjct: 239 HGEATAPAHMLLAGILLKMGGYALLRMNAGMLPDAHAYFAPVLVILGVVNIIYAALTSFA 298 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S G+ GAM QM+SHGL+ ++LFF VG YDR H Sbjct: 299 QRNLKRKIAYSSISHMGFVLIGIASFTDIGLSGAMLQMISHGLIGASLFFMVGATYDRTH 358 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT------- 408 T + GG+ M + + +MA++ LPG SGF+ E +V + F S+ Sbjct: 359 TLMLDEMGGIGKKMKKVFAMWTTCSMASLALPGMSGFVAELMVFVG-FATSDAYNSTFKV 417 Query: 409 -VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRE----RCMVYPIAVL 461 + LA+ GV+L+ +Y L + R++++G E V K D RE C++ PI Sbjct: 418 IIVFLAAVGVILTPIYLLSMLREMLYGPENKELVSHTKLIDAEPREVFIIGCLLIPI--- 474 Query: 462 TVFFGIYP---VPIRDTFSVPLSSIIEN 486 + G+YP I D+ + L++I+ Sbjct: 475 -IGIGLYPKIVTQIYDSTTTQLTTILRQ 501 >gi|296130539|ref|YP_003637789.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cellulomonas flavigena DSM 20109] gi|296022354|gb|ADG75590.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cellulomonas flavigena DSM 20109] Length = 514 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 175/498 (35%), Positives = 290/498 (58%), Gaps = 18/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFF-GVALGISTINFIFSLFVWSVFD-KGR 59 N P+L+ + LP +G + L G R+ VALG + + ++ ++ FD Sbjct: 3 NFPWLTALVVLPLVGAAALWL---LPAGARTRARTVALGFALAEVLLAVAAFTAFDVADA 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWK------SIQENFR 112 ++ Q++E WI S+ LGVDG+ + L+ ++ L P +L++W+ + + R Sbjct: 60 ATHQLVETAPWIPALGVSWALGVDGVGLALIGMSVVLVPLVVLAAWREQGSTDAPTDRLR 119 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF 172 Y+ L+LE+ ++ F + D+ LFY+ FEA LIP++ +IG +GG++R YAA KF LY+ Sbjct: 120 HYLALVLLLEAFIVLVFAARDVFLFYVVFEAMLIPVYFMIGAFGGAQRRYAAVKFLLYSL 179 Query: 173 FGSIFMLFAIVVMCWEKKTSS----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 G + ML ++ + + I +L + P +++ W++++FF +FAIK PMFP Sbjct: 180 AGGLVMLVGVIALYLQGPGGPEGFLIENLVGLELDP-TVEKWLFLSFFLAFAIKAPMFPV 238 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 HTWLP+A QAP S L G++ K+G +G + LPLFP AS++ APV+ L+++++IY Sbjct: 239 HTWLPDAAQQAPAGTSTLLVGVLDKVGTFGMLTLCLPLFPAASRWAAPVVIVLAVVSVIY 298 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 +L+++ Q D+ +L+AY+S++H G++ +GIF+ + V G+ F M++HGL + ALF VG Sbjct: 299 GALLAIGQKDMMRLVAYTSVSHFGFIVLGIFAFTSTSVAGSSFYMVNHGLSTGALFLLVG 358 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 + R ++ I +GGL +P A + +V ++ + LPG S F+ EFLVI+ F Sbjct: 359 FLAARRGSQQIVDFGGLQKVVPVLAGLFLVVGLSALSLPGLSTFVSEFLVIVGTFAAHPA 418 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 AV+A+ GVVL+A+Y LWLY++V G + E + D+ RER +V P+ L + G Sbjct: 419 AAVVATLGVVLAAVYVLWLYQRVFTGPPRPE-LAATPDVGARERWVVGPLVALMLVLGFV 477 Query: 469 PVPIRDTFSVPLSSIIEN 486 P P D P I Sbjct: 478 PGPALDLVRPPAQESIAQ 495 >gi|254422804|ref|ZP_05036522.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Synechococcus sp. PCC 7335] gi|196190293|gb|EDX85257.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Synechococcus sp. PCC 7335] Length = 534 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 183/501 (36%), Positives = 283/501 (56%), Gaps = 27/501 (5%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+LS + F PFL +I ++ + +G+ I FV + +D + Q Sbjct: 5 PWLSFIVFFPFLAALLIPVIPDEKGRTVRWYALVIGLIDFAAIVYAFV-NHYDINSAGMQ 63 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y W+ + +GVDG+S+ LV+LT F+T IL+SW F+ + FL+L Sbjct: 64 LYESYAWVPQLDLRWSVGVDGLSMPLVLLTGFITTLAILASWPV---TFKPKLFYFLLLS 120 Query: 123 --SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + IG F+ DMLLF++ +E L+P+++++ +WGG +R+YAA KF LYT GS+F+L Sbjct: 121 MYAGQIGVFVVQDMLLFFLMWELELLPVYLLLSIWGGKKRLYAATKFILYTAGGSLFILL 180 Query: 181 AIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A + M + T S + A +FP +Q +++ F ++A+K+P+ PFHTWLP+AH +A Sbjct: 181 AALGMAFYGDTISFDMQTLAAKEFPLRLQLFLYSGFLIAYAVKLPIIPFHTWLPDAHGEA 240 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + LAGI+LKMGGY IR + + P A AP + ++ IIYA+L S Q ++ Sbjct: 241 TAPVHMLLAGILLKMGGYAIIRMNVEMLPDAHAIIAPGLVIFGVVNIIYAALTSFAQNNL 300 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+ IAYSSI+HMG+V IGI S G+ GA+ QM+SHGL+ ++LFF VG YDR HT + Sbjct: 301 KRKIAYSSISHMGFVMIGIGSFTNLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTLIL 360 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT--------VAV 411 GG+ MP+ + +MA++ LPG SGF+ E +V + F NS+ V + Sbjct: 361 DEMGGVGRKMPKIFAMFTTCSMASLALPGMSGFVAELMVFVG-FANSDAYGFNFKLIVVM 419 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLTVFF 465 L + GV+L+ LY L + R++ +G E ++ L D RE C++ PI + F Sbjct: 420 LMAVGVILTPLYLLSMLREIFYGPENQELIEHEVLIDAEPREVFVITCLLIPI----IGF 475 Query: 466 GIYPVPIRDTFSVPLSSIIEN 486 G+YP + + I E Sbjct: 476 GLYPKGLTQLYDAKTVQITER 496 >gi|218509151|ref|ZP_03507029.1| NADH-ubiquinone oxidoreductase protein, chain M [Rhizobium etli Brasil 5] Length = 320 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 145/322 (45%), Positives = 216/322 (67%), Gaps = 7/322 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M LP LS++ F P G V++F R +ALG++ ++ + + + FD Sbjct: 1 MGLPLLSLIVFTPAAGAAVLMFLRSDAAVRW----MALGVTVLDLALCIAMLAGFDTTTH 56 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q E W+ +Y LG+DGIS L V LT L C+L+SW +I +E+M++ L Sbjct: 57 AMQFTETRPWVPALGITYALGIDGISALFVFLTALLGSTCVLASWVAIDRKVKEFMVSLL 116 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +E++++G F +LD+ LFY+F+EA LIPM++IIG+WGG R+YAA+KFFLYT GS+ L Sbjct: 117 AMEALMLGVFCALDLFLFYVFWEAMLIPMYLIIGIWGGDGRVYAAFKFFLYTLAGSVLFL 176 Query: 180 FAIVVMCWEK-KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++V+ + +T I+ L A P +Q W++ AF +FA+K+PM P HTWLP+AHVQ Sbjct: 177 VGVIVLYFNGGETFDILALTA-QDLPLRVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQ 235 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGS+ LAG++LKMG YG +RF LP+ P AS Y++ ++ LS +AI+Y L+++ Q D Sbjct: 236 APTAGSIILAGVLLKMGAYGFLRFSLPMLPDASVYYSTLMLSLSALAIVYGGLLALAQDD 295 Query: 299 IKKLIAYSSIAHMGYVTIGIFS 320 +KKL+AYSSI+HMG+VT+GIF+ Sbjct: 296 LKKLVAYSSISHMGFVTMGIFA 317 >gi|71733180|ref|YP_271930.1| NADH dehydrogenase subunit 4 [Montastraea annularis] gi|71043520|dbj|BAE16183.1| NADH dehydrogenase subunit 4 [Montastraea annularis] gi|71043534|dbj|BAE16196.1| NADH dehydrogenase subunit 4 [Montastraea annularis] gi|71043548|dbj|BAE16209.1| NADH dehydrogenase subunit 4 [Montastraea franksi] Length = 479 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 191/425 (44%), Positives = 272/425 (64%), Gaps = 6/425 (1%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTTFLTPFCILSSWK 105 +L W FD G FQ +E W + L +DG+S+ ++LTTFL P CIL S K Sbjct: 41 ALVSWGGFD-GEGHFQFLELVEWGSFLAWGPLPFALDGVSLFFLLLTTFLIPVCILISPK 99 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAA 164 S + F+E+++ LE +++G FL D+ LFYIFFE LIPMF +IG+WG E++ A+ Sbjct: 100 STKFLFKEFLLCLFFLEILLVGVFLVFDLFLFYIFFEGVLIPMFFLIGIWGSREEKVRAS 159 Query: 165 YKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 + FF +TF GS+F F I+ + T++ I L +K S+Q W + F SFA+K+P Sbjct: 160 FYFFFFTFAGSVFFFFVILFLYQSTGTTNYI-LLLNTKLSLSVQKWALVGVFLSFAVKLP 218 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + PFH WLP AHV+AP AGSV LAGI+LK+GGYG +RF PLFP AS Y++PVI S+I Sbjct: 219 LVPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGLLRFSWPLFPEASFYWSPVIVCFSVI 278 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 A++Y L++ Q D K+L+AYSS+AHMG V +GIF+ + G+ GA+F ML+HG VSSALF Sbjct: 279 AVVYGGLMTCRQIDFKRLVAYSSVAHMGLVPLGIFTHIMEGLVGAVFLMLAHGFVSSALF 338 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 V +YDR HTR I Y GL MP +AV M+V +++NMGLP + F+GEF +++ F+ Sbjct: 339 IGVTFLYDRHHTRLIKYYRGLTLTMPLFAVSMLVLSLSNMGLPLSCNFVGEFFSLLAAFK 398 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 V L FGV+ SA+YSL L+ ++ FG + +DL+ +E ++P ++ Sbjct: 399 YYYGVGALVVFGVLFSAIYSLSLFNRISFG-GGSNYLLFNRDLNRQEGFTMFPFLIIIFL 457 Query: 465 FGIYP 469 G+ P Sbjct: 458 GGVVP 462 >gi|148653485|ref|YP_001280578.1| NADH dehydrogenase subunit M [Psychrobacter sp. PRwf-1] gi|148572569|gb|ABQ94628.1| proton-translocating NADH-quinone oxidoreductase, chain M [Psychrobacter sp. PRwf-1] Length = 577 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 178/472 (37%), Positives = 267/472 (56%), Gaps = 53/472 (11%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI+ F S+HL +DG+S+L+V LT FL + SW IQ + + L VIG Sbjct: 83 WIESFGISFHLALDGMSLLMVSLTAFLGIMAVGCSWGEIQRRVGFFHLNLLWSLGGVIGV 142 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++D+ LF+ F+E L+P++ +I +WG G + YAA KFF+YT + ML I+ Sbjct: 143 FLAIDLFLFFFFWEMMLVPIYFLIAIWGHNATNGKTKEYAATKFFIYTQASGLIMLIGIL 202 Query: 184 VMCWEKKTSSIIDLYAMSKF---PFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ SS + + + P +Y + + FF FA+K+P+ PFH WLP+AH QA Sbjct: 203 LLVLMNYRSSGVFSFNYNDLLGTPLGGWEYPIMLCFFIGFAVKLPVMPFHGWLPDAHAQA 262 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAGI++K YG IRF+LPLFP ASQ FAP+ L I I Y + ++ +QTDI Sbjct: 263 PTAGSVDLAGILIKTAAYGLIRFVLPLFPEASQQFAPIAMTLGAIGIFYGAWLAFMQTDI 322 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+L+AY+S++HMG+V + I++G ++G M QML+HGL S+ALF G +Y+RLHTR++ Sbjct: 323 KRLLAYTSVSHMGFVILAIYAGTLISLQGLMVQMLAHGLSSAALFIMAGQLYERLHTREL 382 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GG+ YA ++M F + +G+PGT FIGE L+++ F+ +LA+F +V Sbjct: 383 PLMGGMWGQFRYYAPLLMFFCASLLGIPGTGNFIGEILILLGAFEQYPVFVILATFSLVW 442 Query: 420 SALYSLWLYRKVVFG--------VSK---------------------------------- 437 + LYSL + + +FG V+K Sbjct: 443 AGLYSLLIIYRALFGEKTVPETAVAKTAQSVAAKAQLAKATYATATPAGHKINHSYEEEV 502 Query: 438 -CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 +K +L DL+ RE ++ +A+ V+ G+YP P+ DT S + I YT Sbjct: 503 PADKSVKLHDLNKRELTLLLVLAIGLVWLGLYPQPVLDTSSHAMQWINNAYT 554 >gi|68565794|sp|Q85FH5|NU4C_ADICA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|48476040|gb|AAP29441.2| NADH dehydrogenase subunit 4 [Adiantum capillus-veneris] Length = 497 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 185/500 (37%), Positives = 284/500 (56%), Gaps = 27/500 (5%) Query: 2 NLPFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N+P+L+++ LP F G+ + + G R LGI + F+ ++ + F Sbjct: 4 NVPWLTVIVSLPIFAGLMIPILPR---NGNRVTRWYTLGICILEFLLITYIFYCHFRIDY 60 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S Q++E ++WI+ + LG+DG+S+ LV+LT F T LS+W I N R + Sbjct: 61 QSIQLLETFNWINNIHLHWSLGIDGLSLGLVILTGFATTLATLSAWP-ITRNTRLFYFLM 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L++ IG F+S D+LLF+ +E LIP+++++ +WGG R+Y+A KF LYT GSIF+ Sbjct: 120 LIMYGGQIGLFVSRDILLFFFMWEIELIPVYLLLCLWGGKRRLYSATKFVLYTAGGSIFL 179 Query: 179 LFAIVVMCW---EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L A + M + E + +I DL S +P S++ +++ F ++A+K+P+FPFHTWLP+ Sbjct: 180 LVAALTMSFYGSEVPSFNIQDLIHKS-YPLSLEVLIYVGFLVAYAVKLPIFPFHTWLPDT 238 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + + LAG++LKMGGYG IR L L A + I IIYASL+SM Sbjct: 239 HGEAHYSTCMLLAGVLLKMGGYGLIRINLELLTHAHFLLGSWMMLFGAIQIIYASLISMS 298 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q + K+ IAYSSI+HMG+VTIGI S ++G+ GA+ QM+SHGL+ +ALFF G YDR Sbjct: 299 QRNFKRRIAYSSISHMGFVTIGIGSFTETGINGAILQMISHGLIGAALFFLAGTCYDRTR 358 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG +MP+ + ++A++ LPG SGF+ E LV + V ++ Sbjct: 359 TYLLDQLGGAAISMPKLFTMFSTLSLASLALPGMSGFVSELLVFLGVVTSNQYSFAFKAG 418 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK-DLSLRER----CMVYPIAVLTV 463 + VL G VL+ +Y L + R++ +G +K DL RE C + PI + Sbjct: 419 ITVLEGIGTVLTPIYLLSMLRQLFYGYRFFDKSNPYSIDLGPRELFILICFLLPI----L 474 Query: 464 FFGIYPVPIRDTFSVPLSSI 483 G+YP I S + S+ Sbjct: 475 GIGLYPNLILSIGSTEIPSL 494 >gi|294662997|ref|YP_492645.2| NADH dehydrogenase subunit 4 [Dictyostelium citrinum] gi|187479934|gb|ACD12733.1| NADH dehydrogenase subunit 4 [Dictyostelium citrinum] Length = 536 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 151/357 (42%), Positives = 236/357 (66%), Gaps = 3/357 (0%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQE-NFREYMIAFLVLESMVIGAFLSLDMLLFY 138 VDGIS + +VLT L CIL S + I+E +++ I L+ E ++I F + D++ Y Sbjct: 85 NVDGISAIFIVLTIVLILSCILISLRVIKEKQEKQFHIMLLITEILIINFFAATDLVQLY 144 Query: 139 IFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL 197 I +EASLIPM ++IGVWG +E+ AA++ +YT GSIFML +I ++ T+ I + Sbjct: 145 IVYEASLIPMVIMIGVWGSRTEKKIAAFQILIYTLIGSIFMLMSIGLLYSTLGTTDYILI 204 Query: 198 YA-MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 + P +++ ++I FF FA+KIP+ P H WL AHV+APTAGSV LAGI+LK+GG Sbjct: 205 REYIEVLPENVRKIIFIGFFIGFAVKIPIAPLHLWLLRAHVEAPTAGSVLLAGILLKLGG 264 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 YG IR+ + LFP +Y+ P+I + LI+I+Y + ++ Q D+K+++AYSSI+HM + + Sbjct: 265 YGYIRYNIGLFPDLCEYYFPIIGGICLISILYTGIATLTQLDVKRIVAYSSISHMNVIVL 324 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 G+FSG+ G+EG + M+ HG+VS LF C+GVIYDR TR ++AY LVH MP A++ Sbjct: 325 GLFSGVLQGLEGGIILMIGHGIVSGGLFLCIGVIYDRCKTRILYAYNNLVHMMPIMAILF 384 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 + + N+ P TS F+GE L+ + + + + +A ++ ++++A+YS WLY ++ F Sbjct: 385 FLLVLGNIAFPITSNFVGELLIFIGLIKKNIIIAFFSALSMIITAIYSFWLYNRIFF 441 >gi|320160456|ref|YP_004173680.1| NADH-quinone oxidoreductase subunit M [Anaerolinea thermophila UNI-1] gi|319994309|dbj|BAJ63080.1| NADH-quinone oxidoreductase chain M [Anaerolinea thermophila UNI-1] Length = 505 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 183/461 (39%), Positives = 285/461 (61%), Gaps = 28/461 (6%) Query: 41 STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFC 99 S I I S+ +W FD + FQ +E W SYH+G+DGI++ +V+LTT LTP Sbjct: 42 SLIPLILSVILWFRFDPQGAKFQFVEEAVWYPAIHSSYHVGIDGIALTMVLLTTLLTPLA 101 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 IL+S+ SIQ+N R YM+ FL+LE+ ++G FL+LD+LLF++F+E L+PM+ +I WGG+ Sbjct: 102 ILASF-SIQDNVRTYMVLFLLLETGMLGVFLALDLLLFFVFWEVGLVPMYFLIAQWGGAN 160 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT---SSIIDLYAMSKFP------------ 204 R YA+ KF LYT GS+ +L AI ++ +T + +I+L+ P Sbjct: 161 RNYASLKFILYTMAGSLGLLLAIQLIGVVTQTYDITRLIELWPSLDLPGGVLLGLPLSTV 220 Query: 205 FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 ++ +W AF +FAIK+P++PFHTWLP+AH +APTAGS+ LAG++LK+G +G IR +L Sbjct: 221 KAVAFW---AFVVAFAIKVPVWPFHTWLPDAHTEAPTAGSMILAGVLLKLGAFGFIRLVL 277 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS---- 320 PL+P S+ +A + L+ +AII+ +L + Q D K+L+AYSSI HMG+V +G+ + Sbjct: 278 PLYPAESRQYALWLAGLATLAIIFGALGAFGQNDFKRLVAYSSINHMGFVVLGVAAMAIA 337 Query: 321 ----GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 + GA+ QM +HGL S+ +FF VGVIY+R HTRD+ A+GGL +P Y V+ Sbjct: 338 PGTLDANIAMNGAVLQMFNHGLYSAGMFFLVGVIYERAHTRDLNAFGGLYALLPVYGSVL 397 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 + +MA++GLPG +GF+ EF+V+ + L+ G+ + Y+L KV+ G Sbjct: 398 IFTSMASLGLPGLNGFVSEFMVVRGAWGVLTVFTALSMIGLFFTGAYTLKALWKVLHGPL 457 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 + ++++RE ++ P+ L + G+ P I D + Sbjct: 458 NEHWKGHVSEMNVREMLVIAPLMALILVIGVMPGWIVDVIN 498 >gi|90019558|ref|NP_848110.3| NADH dehydrogenase subunit 4 [Adiantum capillus-veneris] Length = 496 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 185/500 (37%), Positives = 284/500 (56%), Gaps = 27/500 (5%) Query: 2 NLPFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N+P+L+++ LP F G+ + + G R LGI + F+ ++ + F Sbjct: 3 NVPWLTVIVSLPIFAGLMIPILPR---NGNRVTRWYTLGICILEFLLITYIFYCHFRIDY 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S Q++E ++WI+ + LG+DG+S+ LV+LT F T LS+W I N R + Sbjct: 60 QSIQLLETFNWINNIHLHWSLGIDGLSLGLVILTGFATTLATLSAWP-ITRNTRLFYFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L++ IG F+S D+LLF+ +E LIP+++++ +WGG R+Y+A KF LYT GSIF+ Sbjct: 119 LIMYGGQIGLFVSRDILLFFFMWEIELIPVYLLLCLWGGKRRLYSATKFVLYTAGGSIFL 178 Query: 179 LFAIVVMCW---EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L A + M + E + +I DL S +P S++ +++ F ++A+K+P+FPFHTWLP+ Sbjct: 179 LVAALTMSFYGSEVPSFNIQDLIHKS-YPLSLEVLIYVGFLVAYAVKLPIFPFHTWLPDT 237 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + + LAG++LKMGGYG IR L L A + I IIYASL+SM Sbjct: 238 HGEAHYSTCMLLAGVLLKMGGYGLIRINLELLTHAHFLLGSWMMLFGAIQIIYASLISMS 297 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q + K+ IAYSSI+HMG+VTIGI S ++G+ GA+ QM+SHGL+ +ALFF G YDR Sbjct: 298 QRNFKRRIAYSSISHMGFVTIGIGSFTETGINGAILQMISHGLIGAALFFLAGTCYDRTR 357 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG +MP+ + ++A++ LPG SGF+ E LV + V ++ Sbjct: 358 TYLLDQLGGAAISMPKLFTMFSTLSLASLALPGMSGFVSELLVFLGVVTSNQYSFAFKAG 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK-DLSLRER----CMVYPIAVLTV 463 + VL G VL+ +Y L + R++ +G +K DL RE C + PI + Sbjct: 418 ITVLEGIGTVLTPIYLLSMLRQLFYGYRFFDKSNPYSIDLGPRELFILICFLLPI----L 473 Query: 464 FFGIYPVPIRDTFSVPLSSI 483 G+YP I S + S+ Sbjct: 474 GIGLYPNLILSIGSTEIPSL 493 >gi|282898729|ref|ZP_06306716.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Cylindrospermopsis raciborskii CS-505] gi|281196256|gb|EFA71166.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Cylindrospermopsis raciborskii CS-505] Length = 545 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 177/449 (39%), Positives = 267/449 (59%), Gaps = 24/449 (5%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N P+L+ + P L +I L G R + ALG++ +F + W ++ Sbjct: 4 NFPWLTTIIVFPLLAACLIPLIPDKDGKTVRWY---ALGVAITDFALICYAFWIHYNSVD 60 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + FQ++E Y+W+ + + VDGIS LV+L F+T + S+W+ + R + Sbjct: 61 TGFQLVESYNWMPTLGLKWAVAVDGISAPLVLLAGFVTTLSMFSAWQ-VDRRPRLFYSLM 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LVL + IG F++ D++LF+I +E LIP+++++ +WGG R YAA KF +YT SIF+ Sbjct: 120 LVLYAAQIGVFVAKDLMLFFIMWEVELIPVYLLVSIWGGQRRRYAATKFIIYTAAASIFI 179 Query: 179 LFAIVVMCW---EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L A + M + + + DL A +P ++Q ++ F +F +K+ +FP HTWLP+A Sbjct: 180 LIAALAMGLYGGDNLSFDVSDL-ATKNYPLTLQLLLYAGLFIAFGVKLAIFPLHTWLPDA 238 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + S+ LAG++LKMGGYG IR + L P A YFAPVI L ++ IIY +L S Sbjct: 239 HGEASSPVSMILAGVLLKMGGYGLIRLNMELLPDAHIYFAPVIAVLGVVNIIYGALNSFA 298 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QT++K+ +A+SSI+HMG+V +G+ S G+ GAM QMLSHGL++S LFF GV YDR H Sbjct: 299 QTNMKRRLAFSSISHMGFVLLGLASFTDLGMNGAMLQMLSHGLIASVLFFLAGVTYDRTH 358 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFT---MANMGLPGTSGFIGEFLVIMSVFQNS------ 406 T + GG+ MP VV +FT MA++ LPG SGF+GE V + V + Sbjct: 359 TMVMKDMGGVGQAMP---VVFALFTMGAMASLALPGMSGFVGELSVFVGVTTSDVYTSTF 415 Query: 407 NTVAV-LASFGVVLSALYSLWLYRKVVFG 434 TV V LA+ GV+L+ +Y L + R+V +G Sbjct: 416 CTVTVFLAAVGVILTPIYLLSMLRQVFYG 444 >gi|119867635|ref|YP_937587.1| NADH dehydrogenase subunit M [Mycobacterium sp. KMS] gi|119693724|gb|ABL90797.1| NADH dehydrogenase subunit M [Mycobacterium sp. KMS] Length = 518 Score = 293 bits (750), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 175/496 (35%), Positives = 283/496 (57%), Gaps = 28/496 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M +P+LS++ P +G V++ RR+ VAL +S + + V FD G Sbjct: 1 MVIPWLSVLWAAPIVGAGVVML-----VPRRTLAKWVALAVSLVALAVTAVVAVGFDPGG 55 Query: 60 SSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSI-----QENFRE 113 +Q +E WI F + Y LGVDGI++ L+VLT L P I++ W + + Sbjct: 56 EQYQFVESRQWIPSFGTGYILGVDGIALALIVLTAVLVPLLIVAGWNDADRAPQRRSVHT 115 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI--YAAYKFFLYT 171 Y+ L +E MV + ++LD+LLFY+FFEA LIPM+ +IG +G AA KF LY Sbjct: 116 YLALTLAVEGMVFMSLVALDVLLFYVFFEAMLIPMYFLIGGFGADRAASSKAAVKFLLYN 175 Query: 172 FFGSIFMLFAIVVM--------CWEKKT---SSIIDLYAMSKFPF--SIQYWMWIAFFCS 218 FG + ML A++ + +E T +I+ A F ++ M++ F + Sbjct: 176 LFGGLIMLAAVIGLYVTTAASDAFEGGTFDFRAIVAAVAAGDFAVNPAVLNLMFLGFMFA 235 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 FA+K P++P H WLP+A V+A A +V + +M K+G +G +R+ L LFP A+ F P+I Sbjct: 236 FAVKAPLWPLHRWLPDAAVEATPASAVLMMAVMDKVGTFGMLRYCLQLFPDAATLFRPLI 295 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 L+++ I+Y ++V++ QTD+ +LIAY+SI+H G++ +GIF G G+ M++HG+ Sbjct: 296 ITLAVVGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILGIFVMTSQGQSGSALYMVNHGI 355 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 ++ALF G + + +R I +YGG+ P A +V +A + LPG + FI EFLV Sbjct: 356 STAALFLIAGFLVSQRGSRLIASYGGVQKVAPVLAGTFLVAGLATLSLPGLAPFISEFLV 415 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 ++ F +AV+A+ +VLSA+Y LW+Y++++ G + + ++L+DL RE +V P+ Sbjct: 416 LIGTFTRYPVLAVVAATALVLSAIYVLWMYQRMMTGPVR-DGNERLRDLVPRELAVVTPL 474 Query: 459 AVLTVFFGIYPVPIRD 474 L + G+YP P D Sbjct: 475 IALLLVLGVYPKPALD 490 >gi|71733166|ref|YP_271943.1| NADH dehydrogenase subunit 4 [Montastraea franksi] gi|71043562|dbj|BAE16222.1| NADH dehydrogenase subunit 4 [Montastraea franksi] gi|71043590|dbj|BAE16248.1| NADH dehydrogenase subunit 4 [Montastraea faveolata] Length = 479 Score = 293 bits (750), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 191/425 (44%), Positives = 271/425 (63%), Gaps = 6/425 (1%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTTFLTPFCILSSWK 105 +L W FD G FQ +E W + L +DG+S+ ++LTTFL P CIL S K Sbjct: 41 ALVSWGGFD-GEGHFQFLELVEWGSFLAWGPLPFALDGVSLFFLLLTTFLIPVCILISPK 99 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAA 164 S + F+E+++ LE +++G FL D+ LFYIFFE LIPMF +IG+WG E++ A+ Sbjct: 100 STKFLFKEFLLCLFFLEILLVGVFLVFDLFLFYIFFEGVLIPMFFLIGIWGSREEKVRAS 159 Query: 165 YKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 + FF +TF GS+F F I+ + T++ I L +K S+Q W + F SFA+K+P Sbjct: 160 FYFFFFTFAGSVFFFFVILFLYQSTGTTNYI-LLLNTKLSLSVQKWALVGVFLSFAVKLP 218 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + PFH WLP AHV+AP AGSV LAGI+LK+GGYG +RF PLFP AS Y++PVI S+I Sbjct: 219 LVPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGLLRFSWPLFPEASFYWSPVIVCFSVI 278 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 A++Y L++ Q D K+L+AYSS+AHMG V +GIF+ + G+ GA+F ML+HG VSSALF Sbjct: 279 AVVYGGLMTCRQIDFKRLVAYSSVAHMGLVPLGIFTHIMEGLVGAVFLMLAHGFVSSALF 338 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 V +YDR HTR I Y GL MP +AV M+V +++NMGLP + F+GEF +++ F+ Sbjct: 339 IGVTFLYDRHHTRLIKYYRGLTLTMPLFAVSMLVLSLSNMGLPLSCNFVGEFFSLLAAFK 398 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 V L FGV+ SA+YSL L+ + FG + +DL+ +E ++P ++ Sbjct: 399 YYYGVGALVVFGVLFSAIYSLSLFNRTSFG-GGSNYLLFNRDLNRQEGFTMFPFLIIIFL 457 Query: 465 FGIYP 469 G+ P Sbjct: 458 GGVVP 462 >gi|170078922|ref|YP_001735560.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. PCC 7002] gi|193806217|sp|B1XJL9|NU4C3_SYNP2 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 3; AltName: Full=NAD(P)H dehydrogenase I, chain 4 3; AltName: Full=NDH-1, chain 4 3 gi|169886591|gb|ACB00305.1| NADH dehydrogenase subunit 4 [Synechococcus sp. PCC 7002] Length = 550 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 168/442 (38%), Positives = 258/442 (58%), Gaps = 16/442 (3%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 + P+L+ + LP L +I L G R + AL + ++F F W FD Sbjct: 4 DFPWLTAIIALPALSTLLIPLLPDKEGKTVRWY---ALIVGLVDFALMCFAFWQHFDPQA 60 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + FQ+ E Y W+ + + VDGIS LV+L F+T + S+W+ + + R + Sbjct: 61 TEFQLAESYRWLPSLGIQWSVAVDGISAPLVLLAGFVTTLAMFSAWQ-VNQRPRLFYALM 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L S IG F++ D+ LF++ +E LIP+++++ +WGG R YAA KF LYT SIF+ Sbjct: 120 LLLYSAQIGVFVAKDLFLFFLMWEIELIPVYLLVCIWGGKRRRYAAMKFLLYTAAASIFI 179 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A + + DL A+++ +P +Q W++ SF +K+ +FP HTWLP+AH Sbjct: 180 LVAALALSLNLPGGPNFDLGAIAQQDYPLGLQMWLYAGLLVSFGVKLAIFPLHTWLPDAH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + S+ LAG++LKMGGYG +RF + L P A FAP++ L ++ I+Y + S Q Sbjct: 240 GEASSPVSMLLAGVLLKMGGYGLMRFNMELLPDAHVRFAPLLVILGVVNIVYGAFSSFGQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 T++K+ +AYSS++HMG+V IGI S G+ GAM QMLSHGL++S LFF GV YDR T Sbjct: 300 TNMKRRLAYSSVSHMGFVLIGIASFTDLGINGAMLQMLSHGLIASVLFFLAGVTYDRTKT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVA 410 + GGL MP+ + V +A++ LPG SGF+GE V + + + T+ Sbjct: 360 MVLAEVGGLGQVMPKVFAMFTVGALASLALPGMSGFVGELSVFVGLASSDTYSATFRTIT 419 Query: 411 V-LASFGVVLSALYSLWLYRKV 431 V LA+ GV+L+ +Y L + R++ Sbjct: 420 VFLAAVGVILTPIYLLSMLREM 441 >gi|172039212|ref|YP_001805713.1| NAD(P)H-quinone oxidoreductase subunit 4 [Cyanothece sp. ATCC 51142] gi|171700666|gb|ACB53647.1| NADH dehydrogenase subunit 4 [Cyanothece sp. ATCC 51142] Length = 528 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 180/531 (33%), Positives = 289/531 (54%), Gaps = 46/531 (8%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N P+L+ + P + +I + G R + AL + I+F ++ ++ +D Sbjct: 7 NFPWLTTIILFPIVAALLIPIIPDKDGKTVRWY---ALTVGLIDFAIIVYAFYTGYDLSN 63 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q++E Y W+ + + +G DG+++ L++LT F+T +++W F+ + F Sbjct: 64 PNLQLVESYAWVPELDLKWSVGADGLAMPLILLTGFITTLATMAAWPV---TFKPKLFYF 120 Query: 119 LVLE--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L I F DMLLF++ +E L+P+++I+ +WGG R+YAA KF LYT GS+ Sbjct: 121 LMLAMYGGQIAVFAVQDMLLFFLVWELELVPVYLILSIWGGKRRLYAATKFILYTAGGSL 180 Query: 177 FMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F+L + M + T + + A P +Q +++ F ++ +K+P+FP HTWLP+A Sbjct: 181 FILVGALTMAFFGDTVTFDMSAIAAKDIPLKLQLFLYAGFLIAYGVKLPIFPLHTWLPDA 240 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY +R + P A YFAPV+ L ++ IIYA+L S Sbjct: 241 HGEATAPAHMLLAGILLKMGGYALLRMNAGMLPDAHAYFAPVLVILGVVNIIYAALTSFA 300 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S GV GAM QM+SHGL+ ++LFF VG YDR H Sbjct: 301 QRNLKRKIAYSSISHMGFVLIGIASFTDIGVSGAMLQMISHGLIGASLFFMVGATYDRTH 360 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT------- 408 T + GG+ M + + +MA++ LPG SGF+ E +V + F S+ Sbjct: 361 TLMLDEMGGVGKKMKKVFAMWTTCSMASLALPGMSGFVAELMVFVG-FATSDAYNSTFKV 419 Query: 409 -VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRE----RCMVYPIAVL 461 + LA+ GV+L+ +Y L + R++++G E V K D RE C++ PI Sbjct: 420 IIVFLAAVGVILTPIYLLSMLREMLYGPENKELVSHTKLIDAEPREVFIIGCLLIPI--- 476 Query: 462 TVFFGIYPVPIRDTF-------------SVPLSSIIENYTLKTGYSDSVKG 499 + G+YP + + SVP S++E + + Y +VK Sbjct: 477 -IGIGLYPKIVTQIYDSTTTQLTTLLRQSVP--SLVEEMEVASRYDMAVKA 524 >gi|111022884|ref|YP_705856.1| NADH dehydrogenase subunit M [Rhodococcus jostii RHA1] gi|110822414|gb|ABG97698.1| probable NADH dehydrogenase subunit M [Rhodococcus jostii RHA1] Length = 523 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 171/449 (38%), Positives = 271/449 (60%), Gaps = 21/449 (4%) Query: 55 FDKGRSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKS------- 106 FD +Q +E + WI F + Y LG+DGI+++LV+LTT L P +L+ W Sbjct: 54 FDPTGEQYQFVESHAWIPAFGTRYILGLDGIALVLVLLTTILVPLLLLAGWNDGDTAPDY 113 Query: 107 -IQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 + Y+ L++E+MVI +F +LD+LLFYIFFEA LIPM+ +IG +GG R YAA Sbjct: 114 GQRRMAHTYVALTLMVEAMVIVSFAALDVLLFYIFFEAMLIPMYFLIGGFGGVGRTYAAV 173 Query: 166 KFFLYTFFGSIFMLFAI--VVMCWEKKTS--------SIIDLYAMSKFPFSIQYWMWIAF 215 KF LY FG + ML A+ V + ++ + +I + P ++ +++ F Sbjct: 174 KFLLYNLFGGLIMLAAVIGVYVVTARQDAFGGGTFDFRVIVAEGLDADPGVLKA-LFLGF 232 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 +FA+K P++PFHTWLP A V+A A +V + ++ K+G +G +R+ L +FP AS YFA Sbjct: 233 MFAFAVKAPLWPFHTWLPGAAVEATPASAVLMMAVVDKVGTFGMLRYCLQMFPEASAYFA 292 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 P + L++I IIY +++++ QTD+ +LIAY+SI+H G++ +GIF+ G G+ M++ Sbjct: 293 PFVTVLAVIGIIYGAVLAIGQTDVMRLIAYTSISHFGFIILGIFAMTSQGQAGSTLYMVN 352 Query: 336 HGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGE 395 HG+ ++ALF G + R TR I YGG+ P A +V +A + LPG + FI E Sbjct: 353 HGISTAALFLIAGFLVSRRGTRLIADYGGVQKVAPVMAGTFLVAGLATLSLPGLAPFISE 412 Query: 396 FLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 FLV++ F AV+A+F +VL+A+Y LWLY++++ G K E + ++DL RE +V Sbjct: 413 FLVLVGTFSRYQIAAVVATFALVLAAIYVLWLYQRMMTGPLK-EGNETVRDLVRREIAVV 471 Query: 456 YPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 P+ L + G+YP P+ D + +S ++ Sbjct: 472 APLIALLLVLGVYPKPVLDVITPAVSHVL 500 >gi|312132056|ref|YP_003999396.1| protoN-translocating NADH-quinone oxidoreductase, chain m [Leadbetterella byssophila DSM 17132] gi|311908602|gb|ADQ19043.1| proton-translocating NADH-quinone oxidoreductase, chain M [Leadbetterella byssophila DSM 17132] Length = 521 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 179/473 (37%), Positives = 277/473 (58%), Gaps = 42/473 (8%) Query: 54 VFDKGRSSFQMIEYYHWIDYFC--------SYHLGVDGISILLVVLTTFLTPFCILSSWK 105 +F++ + +Q +E+ W F Y LGVDG+SI ++ L++ + +SS+K Sbjct: 50 LFERDNAEYQFLEHSEWFRLFLGNSSLLSIDYILGVDGLSISMIALSSIVFLIASISSFK 109 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 + + Y L+L + V G FL++D LF++FFE L+PM+ +IG+WGG R +A+ Sbjct: 110 -VHTREKTYHSLLLLLTASVYGCFLAVDFFLFFVFFEFMLLPMYFLIGIWGGENRAFASL 168 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF-----------------SIQ 208 KFF+YTF GS+F+L A++ + + YA + F SI+ Sbjct: 169 KFFIYTFGGSVFILIAMICLVISHQDEFFTSEYARLVYSFDFRTLKDASNLIEHSLLSIE 228 Query: 209 Y-----------WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 + ++++ F +K+P+FPFHTWLP+AHV+APT SV LAGI+LK+GGY Sbjct: 229 HPTMILGIPARDFVFLLLLIGFGVKMPVFPFHTWLPDAHVEAPTPISVILAGILLKIGGY 288 Query: 258 GCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 G +R PL P AS ++ +I L LI+IIY +L ++ Q D+KK+IAYSSI+HMG+V +G Sbjct: 289 GVLRIAYPLLPDASVKYSALIGILGLISIIYGALNALNQQDLKKMIAYSSISHMGFVFVG 348 Query: 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMM 377 I S G GA+FQM SHG++SS LF GVIYDR H R I+ Y GL MP + V++ Sbjct: 349 IASFHTIGFNGAIFQMFSHGILSSMLFLIAGVIYDRTHDRQIYHYKGLAKKMPYFTVLVA 408 Query: 378 VFTMANMGLPGTSGFIGEFLVIMSVFQNS---NTVAVLASFGVVLSALYSLWLYRKVVFG 434 V ++GLP SGFIGEFL + FQ+ + +L G++LSA+Y LW ++K+ G Sbjct: 409 VAFFGSLGLPSLSGFIGEFLTLHGGFQSEVLPKAIPMLGVLGIILSAIYFLWTFQKMFLG 468 Query: 435 VSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + + + LKDL RE M+ + ++T+ G++P + + L+ +++ Sbjct: 469 EYQPSEEYRSLLKDLDRRELFMLTSLGIITLLTGVWPNLVLRYINASLTELLK 521 >gi|169634170|ref|YP_001707906.1| NADH dehydrogenase subunit M [Acinetobacter baumannii SDF] gi|169152962|emb|CAP02008.1| NADH dehydrogenase I chain M, membrane subunit [Acinetobacter baumannii] Length = 532 Score = 293 bits (749), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 175/449 (38%), Positives = 254/449 (56%), Gaps = 17/449 (3%) Query: 67 YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 Y WI HL VDG+S+L+V+LT L + SW IQ+N + + L V Sbjct: 72 YLPWIQSLGIGIHLAVDGLSLLMVLLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGV 131 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLF 180 IG FL++D+ LF+ F+E L+P++ +I +WG G R+YAA KFFLYT + ML Sbjct: 132 IGVFLAIDLFLFFFFWEMMLVPIYFLIALWGHKGSNGRSRVYAATKFFLYTQIAGLVMLI 191 Query: 181 AIV-VMCWEKKTSSIID------LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 I+ ++ + + +I L ++ P Y I FF FA+K+P+FP H WLP Sbjct: 192 GILGLVVYGYMMTGMIGFDYNYLLAVANRLPAGFAYGFMICFFIGFAVKLPVFPLHGWLP 251 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH QAPTAGSV LAGI++K YG +RF++P FP AS FA + LI I Y + + Sbjct: 252 DAHAQAPTAGSVDLAGILIKTAAYGLLRFVIPFFPAASAQFADIAIIFGLIGIFYGAWCA 311 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 QTD+K+L+AY+SI+HMG+V + I++G +G M ML+HGL S+ALF G IY+R Sbjct: 312 YQQTDMKRLLAYTSISHMGFVLLAIYAGNILTFQGLMIMMLAHGLSSAALFIMSGQIYER 371 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 LHTRD+ GGL + +M F A +G+PG FIGEFL++M F ++A Sbjct: 372 LHTRDLRLMGGLRGQLQYLPFFLMFFVAALIGVPGLGNFIGEFLILMGSFNKYPVFTIIA 431 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYP 469 S +V + LY L L + +FG E+ Q LKDLS RE ++ A+ V+ GIYP Sbjct: 432 SISLVFAGLYGLILIHRALFGEPNSEQKQHYTSPLKDLSAREVSILMICAIGLVWLGIYP 491 Query: 470 VPIRDTFSVPLSSIIENYTLKTGYSDSVK 498 D + ++ +Y + ++V+ Sbjct: 492 QTFLDVSHSSMQWLVNSYVPVQEFVETVQ 520 >gi|164422131|ref|YP_001648745.1| NADH dehydrogenase subunit 4 [Mycosphaerella graminicola] gi|155964394|gb|ABU40261.1| NADH dehydrogenase subunit 4 [Mycosphaerella graminicola] Length = 497 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 183/451 (40%), Positives = 277/451 (61%), Gaps = 4/451 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFL 95 +AL S IN SL V+ +F+ + FQ ++ YH + F ++LGVDGISI V+LTT + Sbjct: 44 IALSTSIINLFVSLIVFILFNFSSNQFQFVQEYHSMSSF-DFYLGVDGISIYFVLLTTII 102 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 P +LS+W SI EN + Y+I L+LE++++ FL LD+LLFYIFFE+ L P+F++IG++ Sbjct: 103 MPISLLSNWSSISENIKSYVIIILLLETLLLAVFLVLDILLFYIFFESILPPLFILIGLF 162 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF 215 G S R+ A++ FLYT GS+F+L +I+ M T+ LY + F F Q +++ Sbjct: 163 GSSNRVRASFYLFLYTLLGSLFLLLSILTMSSIMGTTDFDALYK-TNFNFITQLFLFYGI 221 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 F +FA+K P +TWL AHV++P GS+ LAGI+LK+ YG +R +LPL P A YF Sbjct: 222 FIAFAVKTPTIFLNTWLLKAHVESPLGGSIILAGIVLKLSLYGILRLILPLLPKAYFYFT 281 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 VI+ + +I IIYAS ++ D+K+LIAYSS++H +G+FS G+EG + L+ Sbjct: 282 SVIYVIGVITIIYASFSTLRTIDVKELIAYSSVSHAAVYLLGVFSNTIQGIEGGIVLGLA 341 Query: 336 HGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 HG VSS LF C GV+YDR TR I Y G+ MP ++++ + + N G P + FIG Sbjct: 342 HGFVSSGLFICAGGVLYDRSSTRLITFYRGVTQIMPLFSILFFILCLGNAGTPLSLNFIG 401 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERC 453 EF+ + F+ + AS +V SA Y+++++ ++ F S + + DL+ RE Sbjct: 402 EFMSLYGTFERFPLLGAFASSSIVFSAAYTMYMFNRIAFAGSLSRFFKFNIPDLNKREFY 461 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 ++ + LTV G+YP PI D +SS+I Sbjct: 462 ILLTLVSLTVILGVYPTPILDGLHYSVSSLI 492 >gi|124112060|ref|YP_001019158.1| subunit 4 of NADH-plastoquinone oxidoreductase [Chlorokybus atmophyticus] gi|193806303|sp|Q19V61|NU4C_CHLAT RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|124012176|gb|ABD62192.2| subunit 4 of NADH-plastoquinone oxidoreductase [Chlorokybus atmophyticus] Length = 512 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 177/505 (35%), Positives = 288/505 (57%), Gaps = 29/505 (5%) Query: 1 MNLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKG 58 MNLP+L+I+ P L G+ + G R + ALG+ ++F+ +++ ++ Sbjct: 2 MNLPWLTIIVLFPILAGLLIPFIPDEKGKTIRWY---ALGVGILDFLLITYIFGYHYNFK 58 Query: 59 RSSFQMIEYYHWIDYFCSYH--LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 S Q++E Y W+ +H LGVDG+S+ LV+LT F+T IL +W ++ N + + Sbjct: 59 DPSLQLVEDYSWVP-LLRFHWCLGVDGLSMPLVLLTGFVTTLAILGAW-PVKRNAKLFYF 116 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L + S IG F+S D+LLF+ +E LIP+++++ VWGG +R+YAA KF LYT GSI Sbjct: 117 LMLAMYSGQIGVFVSQDLLLFFFMWELELIPVYLLLLVWGGKKRLYAATKFILYTAIGSI 176 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L A + M + + D+ A+ ++P +++ ++I F ++A+K+P FP HTWLP+ Sbjct: 177 FILLAGLTMAFYGDIVTF-DMRALKLKEYPLNLEILLYIGFLIAYAVKLPAFPLHTWLPD 235 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 H +A + + LAGI+LKMGGY IR + + P A FAP + + +I IIYA+L S Sbjct: 236 THGEAHYSTCMLLAGILLKMGGYALIRINMDMLPNAHLIFAPFLIIIGVINIIYAALTSF 295 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q ++K+ IAYSS++HMG+V IGI S G+ GA+ QM+SHGL+ ++LFF G YDR Sbjct: 296 AQRNMKRKIAYSSVSHMGFVLIGIGSLTNLGLSGAVLQMISHGLIGASLFFLAGTTYDRT 355 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS-------VFQNSN 407 T + GG+ MP+ + ++A++ LPG SGF+ E +V + F+ Sbjct: 356 RTLILEDMGGVAKKMPKTFAMFTTCSLASLALPGMSGFVAELMVFLGFATSASYSFEFKA 415 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRE----RCMVYPIAVL 461 + L G++L+ +Y L + R+ +G + + K D RE C+V PI Sbjct: 416 IITFLEGIGIILTPIYLLSMLRQAFYGSESFTLLNKRKLIDAGPREIFVITCLVLPI--- 472 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIEN 486 + GIYP ++ +++++ Sbjct: 473 -LGIGIYPKMATQIYNSKTETVVQH 496 >gi|301061248|ref|ZP_07202030.1| putative NDH-1 subunit M [delta proteobacterium NaphS2] gi|300444567|gb|EFK08550.1| putative NDH-1 subunit M [delta proteobacterium NaphS2] Length = 492 Score = 292 bits (748), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 183/493 (37%), Positives = 290/493 (58%), Gaps = 17/493 (3%) Query: 4 PFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVF-DKGRSS 61 P LS + FLP LG +F+++ GRR+ ++ +L V +F + G S Sbjct: 5 PMLSAIVFLPLLGALFILILPDRPESGRRT------SLAVTLVDLALVVLLLFSNSGTPS 58 Query: 62 FQ--MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q +E Y WI Y L +DG+S++L++LTTFL L SW I+E R Y Sbjct: 59 GQWLRVEDYAWIPALGIRYTLSLDGLSLMLLLLTTFLGVLSTLISWNQIKEKTRSYYFFL 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+ + ++G F++ D+ LFY F+E +IPMF ++G+WG R KF ++T GS+FM Sbjct: 119 LLTLTGILGVFVATDLFLFYFFWEIQIIPMFFLVGIWGHEARRRTTIKFIIFTMTGSLFM 178 Query: 179 LFAIVVMCWEKKTSSIIDLYAMS-----KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 L A++ + + I +A+S IQ W++ AF +FAIKIPM P HTWLP Sbjct: 179 LIALIGLYTVHGRQTGIYTFALSPLMETSLTLDIQGWLYAAFMLAFAIKIPMVPLHTWLP 238 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 + H QAPTAGSV LAG++LK G YG RF PLFPLA + P++ L L A+ YAS ++ Sbjct: 239 DTHTQAPTAGSVILAGLLLKTGVYGVFRFAAPLFPLAFRTSMPLLMVLGLAALFYASWIA 298 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTDIK+LIAYSSI HMG V +G+ + + G++ Q+++HG+ +SALF VG++ +R Sbjct: 299 LSQTDIKRLIAYSSIGHMGLVVLGLAAFNSITLSGSLLQVINHGVSTSALFILVGILNER 358 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 + +R+ +GGL MP ++ + F+MA++GLPG + F+GE L+++ ++ + + Sbjct: 359 IDSREFKDFGGLWKQMPVFSAFFLFFSMASLGLPGLNNFVGEILILIGTYRAHPVFSAIG 418 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 G++ +Y L + + +FG + V L+D++ RE ++ +A+ +F G+YP P+ Sbjct: 419 FAGLLFGVIYVLRMVQDALFGELRG-AVSLLRDVNARETLILGTLALGVLFLGLYPRPVL 477 Query: 474 DTFSVPLSSIIEN 486 F P+ ++E Sbjct: 478 HLFDGPIRLLMET 490 >gi|332711980|ref|ZP_08431910.1| NADH dehydrogenase subunit M [Lyngbya majuscula 3L] gi|332349308|gb|EGJ28918.1| NADH dehydrogenase subunit M [Lyngbya majuscula 3L] Length = 527 Score = 292 bits (748), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 179/506 (35%), Positives = 284/506 (56%), Gaps = 30/506 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P +I F ++ + +G+ I FV + +D Sbjct: 3 DFPWLTIIILFPIAASLLIPFLPEKNGTWERWYALIIGLIDFALIVYAFV-TQYDLSNPE 61 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y W+ ++ +GVDG+S+ LV+LT F+T +L++W F+ + FL+ Sbjct: 62 LQLVEKYSWVPQMDLNWSVGVDGLSMPLVLLTGFITTLAMLAAWPV---TFKPKLFYFLM 118 Query: 121 LE--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L I F DMLLF++ +E LIP+++++ +WGG +R+YAA KF LYT GS+F+ Sbjct: 119 LAMYGGQIAVFAVQDMLLFFLVWELELIPVYMLLSIWGGKKRLYAATKFILYTAGGSLFI 178 Query: 179 LFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L A + M + T + + A+ + + Q ++ F ++ +K+P+FP HTWLP+AH Sbjct: 179 LLAALGMAFYGDTVTFDMRSLALKDYALNFQLLLYGGFLIAYGVKLPIFPLHTWLPDAHG 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY IR + P A FAPV+ L ++ I+YA+L S Q Sbjct: 239 EATAPVHMLLAGILLKMGGYALIRMNAGMLPDAHAVFAPVLVILGIVNIVYAALTSFAQR 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IGI S G+ GA+ QM+SHGL+ ++LFF VG YDR HT Sbjct: 299 NLKRKIAYSSISHMGFVLIGIASFTDLGMSGAVMQMISHGLIGASLFFLVGATYDRTHTL 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT--------V 409 + GG+ M + + +MA++ LPG SGF+ E +V + F S+ V Sbjct: 359 MLDEMGGVGKRMGKMFAMWTTCSMASLALPGMSGFVAEVMVFVG-FATSDAYGSFFKVLV 417 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPIAVLTV 463 VLA+ GV+L+ +Y L + R++++G E V + L D RE C++ PI + Sbjct: 418 IVLAAVGVILTPIYLLSMLREILYGPENKELVAHEALIDAEPREVFIIACLLVPI----I 473 Query: 464 FFGIYP---VPIRDTFSVPLSSIIEN 486 G+YP I D +V L++ + N Sbjct: 474 GIGLYPKIVTQIYDATTVQLTARLRN 499 >gi|284164394|ref|YP_003402673.1| proton-translocating NADH-quinone oxidoreductase, chain M [Haloterrigena turkmenica DSM 5511] gi|284014049|gb|ADB60000.1| proton-translocating NADH-quinone oxidoreductase, chain M [Haloterrigena turkmenica DSM 5511] Length = 509 Score = 292 bits (748), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 179/482 (37%), Positives = 269/482 (55%), Gaps = 28/482 (5%) Query: 36 VALGISTINFIFSLFVWSVFD-------KGRSSFQ-MIEYYHWIDYFCSYHLGVDGISIL 87 +A IS + SL++++ FD G +F+ +E+ + DY + +G+DGIS+ Sbjct: 28 LAFAISLVPAALSLWMFTAFDGSGNALLDGELAFESHLEWIQFGDYSIEWFVGLDGISLP 87 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 LVV+TT L ILSSW I ++ L +E+ +IG F +LD +++IF+EA LIP Sbjct: 88 LVVMTTILCTLAILSSWTPIDSRESQFYGLVLFIEANLIGVFSALDFFVWFIFWEAVLIP 147 Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFML---FAIVVMCWEKKTS----SIIDLYAM 200 M+++IGVWGG +R YAA KFF+YT S+ M A+V + TS I D Sbjct: 148 MYLLIGVWGGPDRKYAAIKFFVYTNVASLVMFGSFIALVFGLGDAATSFALPDIADAMVN 207 Query: 201 SK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 P + ++IA F FA+K+P+ PFHTWLP+AHVQAPT SV LAG++ Sbjct: 208 GGGVQSSVFGIDPGTFTALVFIAMFLGFAVKVPVVPFHTWLPDAHVQAPTPASVLLAGVL 267 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LKMG Y +RF +FP +A I +++I++IY +++++ QTD+K+++AYSS++ M Sbjct: 268 LKMGTYALLRFNFTMFPEQVATYAVPIAAIAVISVIYGAMLALAQTDLKRIVAYSSVSSM 327 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 GYV +G+ + + GV GA FQM+SHGL+S +F VGVIY+ HTR + GL MP Sbjct: 328 GYVILGLIAYTQFGVGGATFQMVSHGLISGLMFMSVGVIYNVTHTRSVEEMSGLADRMPI 387 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA----VLASFGVVLSALYSLWL 427 +++ MGLP SGF GEF + FQ A LA FG+V+ A Y L+ Sbjct: 388 AVGILVAGAFGYMGLPLMSGFHGEFTIFFGAFQADFAYAPLFTALAMFGIVIVAGYLLFA 447 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 ++ VFG E + L + ++ + L + G+ P I D + + I+ Sbjct: 448 LQRTVFGPYHLETDYDVGRAPLHDIAPMFVLLALIIALGVAPELIFDMITDAVDPILNGG 507 Query: 488 TL 489 L Sbjct: 508 DL 509 >gi|7524971|ref|NP_050069.1| NADH dehydrogenase subunit 4 [Dictyostelium discoideum] gi|74763645|sp|O21047|NU4M_DICDI RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|2251092|dbj|BAA21118.1| NADH dehydrogenase subunit 4 [Dictyostelium discoideum] gi|4958874|dbj|BAA78051.1| NADH dehydrogenase subunit 4 [Dictyostelium discoideum] Length = 540 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 147/356 (41%), Positives = 233/356 (65%), Gaps = 3/356 (0%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFRE-YMIAFLVLESMVIGAFLSLDMLLFYI 139 +DGIS + + LT L C L S + I+E + + I L+ E ++I F + D++ YI Sbjct: 86 IDGISAIFIFLTIILILSCNLISIRVIKEKTEQKFQIMLLLTEILIINFFAATDLVQLYI 145 Query: 140 FFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 +EA+LIPM ++IGVWG +E+ AA++ +YT GSIFML +I ++ T+ I + Sbjct: 146 VYEATLIPMVIMIGVWGSRTEKKIAAFQILIYTLIGSIFMLMSIGILYSTLGTTDYIMIR 205 Query: 199 A-MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 + P +++ ++I FF FA+KIP+ P H WL AHV+APTAGSV LAGI+LK+GGY Sbjct: 206 EYIDVLPENVRKLIFIGFFIGFAVKIPIAPLHLWLLRAHVEAPTAGSVLLAGILLKLGGY 265 Query: 258 GCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 G IR+ + LFP +Y+ P+I + LI+I+Y + ++ Q D+K+++AYSSI+HM + +G Sbjct: 266 GYIRYNIGLFPDLCEYYFPIIGGICLISILYTGIATLTQLDVKRIVAYSSISHMNVIVLG 325 Query: 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMM 377 +FSG+ G+EG + M+ HG+VS LF C+GVIYDR TR ++AY LVH MP A++ Sbjct: 326 LFSGVLQGIEGGIILMIGHGVVSGGLFLCIGVIYDRCKTRIVYAYNNLVHVMPIMAILFF 385 Query: 378 VFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 + + N+ P TS F+GE L+ + + + + +A ++ ++++A+YS WLY ++ F Sbjct: 386 LLVLGNIAFPITSNFVGELLIFIGLIKKNIIIAFFSALSMIVTAIYSFWLYNRIFF 441 >gi|108798535|ref|YP_638732.1| NADH dehydrogenase subunit M [Mycobacterium sp. MCS] gi|108768954|gb|ABG07676.1| NADH dehydrogenase subunit M [Mycobacterium sp. MCS] Length = 517 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 174/494 (35%), Positives = 282/494 (57%), Gaps = 28/494 (5%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRSS 61 +P+LS++ P +G V++ RR+ VAL +S + + V FD G Sbjct: 2 IPWLSVLWAAPIVGAGVVML-----VPRRTLAKWVALAVSLVALAVTAVVAVGFDPGGEQ 56 Query: 62 FQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSI-----QENFREYM 115 +Q +E WI F + Y LGVDGI++ L+VLT L P I++ W + + Y+ Sbjct: 57 YQFVESRQWIPSFGTGYILGVDGIALALIVLTAVLVPLLIVAGWNDADRAPQRRSVHTYL 116 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI--YAAYKFFLYTFF 173 L +E MV + ++LD+LLFY+FFEA LIPM+ +IG +G AA KF LY F Sbjct: 117 ALTLAVEGMVFMSLVALDVLLFYVFFEAMLIPMYFLIGGFGADRAASSKAAVKFLLYNLF 176 Query: 174 GSIFMLFAIVVM--------CWEKKT---SSIIDLYAMSKFPF--SIQYWMWIAFFCSFA 220 G + ML A++ + +E T +I+ A F ++ M++ F +FA Sbjct: 177 GGLIMLAAVIGLYVTTAASDAFEGGTFDFRAIVAAVAAGDFAVNPAVLNLMFLGFMFAFA 236 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K P++P H WLP+A V+A A +V + +M K+G +G +R+ L LFP A+ F P+I Sbjct: 237 VKAPLWPLHRWLPDAAVEATPASAVLMMAVMDKVGTFGMLRYCLQLFPDAATLFRPLIIT 296 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 L+++ I+Y ++V++ QTD+ +LIAY+SI+H G++ +GIF G G+ M++HG+ + Sbjct: 297 LAVVGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILGIFVMTSQGQSGSALYMVNHGIST 356 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 +ALF G + + +R I +YGG+ P A +V +A + LPG + FI EFLV++ Sbjct: 357 AALFLIAGFLVSQRGSRLIASYGGVQKVAPVLAGTFLVAGLATLSLPGLAPFISEFLVLI 416 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 F +AV+A+ +VLSA+Y LW+Y++++ G + + ++L+DL RE +V P+ Sbjct: 417 GTFTRYPVLAVVAATALVLSAIYVLWMYQRMMTGPVR-DGNERLRDLVPRELAVVTPLIA 475 Query: 461 LTVFFGIYPVPIRD 474 L + G+YP P D Sbjct: 476 LLLVLGVYPKPALD 489 >gi|76801799|ref|YP_326807.1| NADH dehydrogenase-like complex, subunit M [Natronomonas pharaonis DSM 2160] gi|76557664|emb|CAI49247.1| NADH dehydrogenase-like complex, subunit M [Natronomonas pharaonis DSM 2160] Length = 515 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 175/481 (36%), Positives = 271/481 (56%), Gaps = 31/481 (6%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSF--------QMIEYYHWIDYFCSYHLGVDGISIL 87 +ALG+S + SL++++ FD ++ E+ Y SYH+G+DGIS+ Sbjct: 28 LALGLSVPPLVVSLYMYAAFDGSGNALLGGDIAYETATEWLQLGQYTVSYHVGLDGISLP 87 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 LVVL+T LT ILS+W I E E+ L+LE +IG F +LD +L+++F+EA LIP Sbjct: 88 LVVLSTVLTTLAILSAWTPIDERQSEFYGLVLLLEGSLIGVFAALDFILWFVFWEAVLIP 147 Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFML---FAIVVMCWEKKTSSIIDLYAMSKFP 204 M+++IGVWGG R YAA KFF+YT S+ M FA+V + +S+ + A + Sbjct: 148 MYLLIGVWGGPRRKYAAIKFFVYTNIASLVMFIGYFALVFGLGDAVSSTGMPAVAQALRA 207 Query: 205 FSIQYW---------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + Y ++A F FA+K+P+ PFHTWLP+AHV+APT SV LAG Sbjct: 208 DQLGYLGTAAVGIGPDMLAMAAFLAMFVGFAVKVPVVPFHTWLPDAHVEAPTPVSVLLAG 267 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LKMG Y +RF + P + FA I +++I+I+Y +L+++ Q D+K+++AYSS++ Sbjct: 268 VLLKMGTYALLRFNFTMLPDQVETFAVPIALIAIISILYGALLALAQKDLKRIVAYSSVS 327 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 MGYV +G+ + GV GA FQM++HGL+S LF VGV Y+ HTR + GGL M Sbjct: 328 SMGYVILGLVAYTVYGVGGATFQMIAHGLISGLLFMTVGVFYNATHTRMVGDMGGLADRM 387 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN-----SNTVAVLASFGVVLSALYS 424 P A + + MGLP +GF+ E V + FQ+ + + FG+V+ A Y Sbjct: 388 PVTAGIFIAGAFGYMGLPLMAGFMAELFVFIGAFQSAILPYAPVITAAGMFGIVVVAGYL 447 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 LW ++ +FG + E +L+ + + + + L + G+ P I + S+I Sbjct: 448 LWAMQRSLFGPFRLETDYELERAPVHDIVPLLTLVALIIALGVAPDLIFEMIRDATHSVI 507 Query: 485 E 485 + Sbjct: 508 D 508 >gi|242910151|ref|YP_002970695.1| NADH-plastoquinone oxidoreductase subunit 4 [Alsophila spinulosa] gi|218454820|gb|ACK77157.1| NADH-plastoquinone oxidoreductase subunit 4 [Alsophila spinulosa] Length = 501 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 183/506 (36%), Positives = 281/506 (55%), Gaps = 27/506 (5%) Query: 2 NLPFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 N+P L+I+ P F G +L G R GI + F+ ++++ F Sbjct: 3 NVPRLTIIVLFPIFAG---LLLPRLPRNGNRIIRWYTPGIRILEFLLIIYIFHCHFRLDN 59 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S Q+IE ++WI+ + LG+DG+S+ L++LT F+T ++W I N R + Sbjct: 60 QSIQLIENFNWINSINFHWRLGIDGLSMGLILLTGFVTTLATPAAWP-ITRNTRLFYFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LV+ S IG F S D+LLF+ E LIP+++++ +WGG R+Y+A KF LYT GSIF+ Sbjct: 119 LVMYSGQIGLFASRDILLFFFMRELELIPIYLLLCLWGGKRRLYSATKFILYTAGGSIFL 178 Query: 179 LFAIVVMCW---EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L A + M + E + I DL S +P S++ ++ F ++A K+P+ PFHTWLP+ Sbjct: 179 LVAALTMSFYGTEVPSFDIQDLTNKS-YPISLEVLFYLGFLIAYAAKLPIVPFHTWLPDT 237 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + + LAG++LKMGGYG IR L L A F + I I+YAS++S+ Sbjct: 238 HGEAHYSTCMLLAGVLLKMGGYGLIRINLELLTHAHSIFGSWLVLFGAIQIVYASMISLS 297 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+VTIGI S +G+ GA+ QM+SHGL+ +A FF G YDR Sbjct: 298 QRNLKRRIAYSSISHMGFVTIGIGSSTNTGINGAILQMISHGLIGAAPFFLAGTCYDRTR 357 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG+ MPR + +F++A++ LPG SGF E LV V N Sbjct: 358 TLSLDQLGGIAIPMPRLFTMFSIFSLASLALPGMSGFASELLVFPGVVTNKQYSSLFKVA 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVS-KCEKVQQLKDLSLRER----CMVYPIAVLTV 463 + ++ + G L+ +YSL + R++ +G E L D RE C+ PI + Sbjct: 418 ITIVEATGTALTPIYSLSMLRRIFYGYRLSNESNPYLIDSGPRELFILICLFLPI----L 473 Query: 464 FFGIYPVPIRDTFSVPLSSIIENYTL 489 G+YP + ++ + SI+ +Y+L Sbjct: 474 GIGLYPNMVLHLWNSKVLSILFSYSL 499 >gi|17231449|ref|NP_487997.1| NAD(P)H-quinone oxidoreductase subunit 4 [Nostoc sp. PCC 7120] gi|21362693|sp|Q8YQ78|NU4C2_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase chain 4-2; AltName: Full=NAD(P)H dehydrogenase I, subunit D-2; AltName: Full=NDH-1, chain 4-2 gi|17133091|dbj|BAB75656.1| NADH dehydrogenase subunit 4 [Nostoc sp. PCC 7120] Length = 525 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 178/506 (35%), Positives = 280/506 (55%), Gaps = 30/506 (5%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N P+L+ + LP +I + G R + AL + I+F ++ ++ +D Sbjct: 5 NFPWLTTIILLPIAASLLIPIIPDKDGKTIRWY---ALTVGLIDFALIVYAFYTSYDFAN 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q++E Y W+ ++ +G DG+S+ L++LT F+T L++W + R + Sbjct: 62 PDLQLVESYPWVPQLDLNWSVGADGLSMPLIILTGFITTLATLAAWP-VTLKPRLFYFLL 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + I F DMLLF++ +E LIP+++++ +WGG +R YAA KF LYT GS+F+ Sbjct: 121 LAMYGGQIAVFAVQDMLLFFLVWELELIPVYLLLAIWGGKKRQYAATKFILYTAGGSLFI 180 Query: 179 LFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L A + M + T + + A+ + + Q ++ F ++AIK+P+ P HTWLP+AH Sbjct: 181 LLASLTMAFYGDTVTFDMRSLALKDYALNFQLLLYAGFLIAYAIKLPIIPLHTWLPDAHG 240 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY IR + P A YFAPV+ L ++ IIYA+L S Q Sbjct: 241 EATAPAHMLLAGILLKMGGYALIRMNAGILPDAHAYFAPVLVVLGVVNIIYAALTSFAQR 300 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IG S G+ GA+ QM+SHGL+ ++LFF VG YDR HT Sbjct: 301 NLKRKIAYSSISHMGFVIIGFASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTL 360 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT--------V 409 + GG+ MP+ + +MA++ LPG SGF+ E +V + F S+ V Sbjct: 361 MLDEMGGVGKRMPKIFAMFTACSMASLALPGMSGFVAELMVFVG-FATSDAYSSTFKVIV 419 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPIAVLTV 463 L + GV+L+ +Y L + R++ +G E V QQL D RE C++ PI + Sbjct: 420 VFLMAVGVILTPIYLLSMLREIFYGKENEELVSHQQLIDAEPREVFVIACLLVPI----I 475 Query: 464 FFGIYP---VPIRDTFSVPLSSIIEN 486 G YP + D +V L++ + + Sbjct: 476 GIGFYPKLLTQMYDATTVQLTARLRD 501 >gi|85059568|ref|YP_455270.1| NADH dehydrogenase subunit M [Sodalis glossinidius str. 'morsitans'] gi|84780088|dbj|BAE74865.1| NADH dehydrogenase I subunit M [Sodalis glossinidius str. 'morsitans'] Length = 510 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 172/453 (37%), Positives = 270/453 (59%), Gaps = 13/453 (2%) Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 +G +Q+ WI F S +L +DG+S+L+VVL L IL SW+ IQ + Sbjct: 58 QGLPQWQVEYLLPWIPRFGISIYLALDGLSLLMVVLAGLLGVLAILCSWREIQRYQGFFH 117 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLY 170 + L + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+Y Sbjct: 118 LNLLWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIY 177 Query: 171 TFFGSIFMLFAI---VVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPM 225 T + ML AI V++ + + + + P S ++Y + + FF +FA+K+P+ Sbjct: 178 TQASGLVMLVAILGLVLVHYNATGVWTFNYEDLLRTPMSERMEYLLMLGFFLAFAVKMPV 237 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FA + +L ++ Sbjct: 238 VPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGMLRFSLPLFPHASHQFAHIAMWLGVVG 297 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 I Y + ++ QTDIK+LIAY+S++HMG+V I I+SG + +GA+ QM++HGL ++ +F Sbjct: 298 IFYGAWMAFSQTDIKRLIAYTSVSHMGFVLIAIYSGSQLAYQGAVVQMIAHGLSAAGMFI 357 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 G +Y+RLH RD+ GGL + + + F +A +G+PGT F+GE ++ F Sbjct: 358 ICGQLYERLHARDMRQMGGLWGRLSFIPALSLFFAVATLGMPGTGNFVGEITILFGSFPV 417 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 + V+++FG+V +++YSL + ++ +G +K + L ++LRER ++ + VL + Sbjct: 418 VPVITVISTFGLVFASVYSLIMMQRAYYGPAK--STEPLPGMTLRERLIILLLVVLVLLL 475 Query: 466 GIYPVPIRDTFSVPLSSIIENYTLKTGYSDSVK 498 G +P PI DT + +S+I + G + S Sbjct: 476 GFFPQPIMDTSAAAMSNIQHWFAADAGSTISTT 508 >gi|183599625|ref|ZP_02961118.1| hypothetical protein PROSTU_03112 [Providencia stuartii ATCC 25827] gi|188021877|gb|EDU59917.1| hypothetical protein PROSTU_03112 [Providencia stuartii ATCC 25827] Length = 506 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 182/509 (35%), Positives = 284/509 (55%), Gaps = 32/509 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + + R+ VAL I I S+ +W D Sbjct: 1 MLLPWLILI---PFIGGLLSWQADRFS--HRAPRWVALASMGITLILSILLWLQGDYSLV 55 Query: 57 --KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 +G +Q+ WI ++HL +DG+S+L+VVLT + F +LSSW Q N Sbjct: 56 NPQGVPQWQVEYSMPWIPMLGINFHLAIDGLSLLMVVLTAIMGAFSVLSSWSENQANQGA 115 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG--GSER---IYAAYKFF 168 Y L + + V+G F ++D+ LF+ F+E LIPM+ +I WG G+E I AA KFF Sbjct: 116 YHFNLLWIIAGVMGIFTAVDLFLFFFFWEMMLIPMYFLIANWGHKGAENRQHINAATKFF 175 Query: 169 LYTFFGSIFMLFAIVVMC---------WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF 219 +YT + ML +IV + W + ++ ++ ++ + + + FF +F Sbjct: 176 IYTQASGLIMLVSIVGLALVHFGDTSVWTFNYNELLG----TQMSSTVGFMLMLGFFIAF 231 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 A+K+P+ PFH W+ + Q+PTAGSV ++GIMLK YG +RF LPLFP AS F P+ Sbjct: 232 AVKMPLVPFHGWMADTQEQSPTAGSVDISGIMLKTAAYGLLRFTLPLFPEASIEFTPIAM 291 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 L +I+I Y + ++ QTDIK+L AYSS++HMG+VT+ I++ +GA+ QM+++GL Sbjct: 292 TLGVISIFYGAWLAFKQTDIKRLAAYSSLSHMGFVTVAIYASSVLAYQGAVIQMITNGLS 351 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 +AL G +Y+R TRD+ GGL + + + F A +G+PGT FIGEF+++ Sbjct: 352 GAALIIISGQLYERTQTRDMRMMGGLWKRIKWLPGLSLFFAAATLGMPGTGNFIGEFMIL 411 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIA 459 F V + FGVV +++YSLW+ ++ +G K E ++K L+ RE ++ +A Sbjct: 412 FGTFSQFTLVTCIMVFGVVFASVYSLWMMQQTYYGTPKSES--EMKGLTAREFGVLLALA 469 Query: 460 VLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 VL V G YP PI DT + ++ YT Sbjct: 470 VLLVIIGFYPQPILDTSEGAMETLHNLYT 498 >gi|284009331|emb|CBA76499.1| NADH-quinone oxidoreductase chain M [Arsenophonus nasoniae] Length = 506 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 169/441 (38%), Positives = 261/441 (59%), Gaps = 13/441 (2%) Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 +Q I + WI + L +DG+S+L++VLT + F +LSSW Q N Y + Sbjct: 62 QWQAIFFMPWITPLGINIALAIDGLSLLMIVLTAIMGIFSVLSSWSENQPNQGAYHFHLM 121 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG--GSER---IYAAYKFFLYTFFG 174 + + V+G FL++D+ LF+ F+E LIPM+ +I WG GSE + AA KFF+YT Sbjct: 122 WILAGVMGIFLAVDLFLFFFFWEMMLIPMYFLIANWGHKGSEERAHVNAATKFFIYTQAS 181 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYA-----MSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 + ML AIV + SS +A +K QY + + FF +FA+K+P+ PFH Sbjct: 182 GLIMLVAIVALALIHYQSSGNWSFAYHDLLNTKMSALTQYLLMLGFFIAFAVKMPLVPFH 241 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 W+ + Q+PTAGSV ++GIMLK YG +RF LPLFP AS F P+ L +I+I Y Sbjct: 242 GWMADTQEQSPTAGSVDISGIMLKTAAYGLLRFTLPLFPTASIQFTPIAMTLGVISIFYG 301 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 + ++ QTDIK+L+AYSS++HMG+VT+ I++G +GA+ QM+++GL +AL G Sbjct: 302 AWLAFKQTDIKRLVAYSSLSHMGFVTVAIYAGSTLAYQGAVLQMIANGLSGAALIIISGQ 361 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 +Y+R TRD+ GGL + + + F +A +G+PGT F+GEF+++ F V Sbjct: 362 LYERTGTRDMRMMGGLWKRIMWLPALSLFFAVATLGMPGTGNFVGEFMILFGTFGQFKLV 421 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + FGVV +++Y+LW+ ++V +G +K EK L L+ RE ++ +A+L V G YP Sbjct: 422 TTIMVFGVVFASIYALWMMQQVYYGSAKSEKA--LPALNGREILVLLTLALLLVILGFYP 479 Query: 470 VPIRDTFSVPLSSIIENYTLK 490 P+ DT + S+ Y++ Sbjct: 480 QPVLDTSKNVMESLHSLYSIS 500 >gi|111220511|ref|YP_711305.1| NADH dehydrogenase subunit M [Frankia alni ACN14a] gi|111148043|emb|CAJ59709.1| NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M) (NDH-1, chain M) [Frankia alni ACN14a] Length = 610 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 150/388 (38%), Positives = 248/388 (63%), Gaps = 13/388 (3%) Query: 100 ILSSWKSIQENFREYMIAF----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 +++ + + + R + AF L LE+ +IG F + D+ LFY+FFEA LIPM+ +IG + Sbjct: 176 VVTRDEVAERHGRRSVPAFFALLLALEAGMIGVFAATDVFLFYVFFEAMLIPMYFLIGSY 235 Query: 156 G----GSERIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPFS-- 206 G ++R YAA KF +Y+ FG + ML A++ V+ + D + + + Sbjct: 236 GPVKEQAQRSYAAVKFLVYSLFGGLLMLAAVIGLYVVSADNLGHGTFDFATLRQMEITPG 295 Query: 207 IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 +Q +++ FF +FAIK P+FPFHTWLP+A Q+PT G+V L G++ K+G +G IR+ +PL Sbjct: 296 VQKLLFLGFFVAFAIKAPLFPFHTWLPDAGAQSPTGGAVLLVGVLDKVGTFGLIRYCIPL 355 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 FP A+ YFAP++ L+++ I Y +L+++ Q D+K+L+AY+S+AH G++ +G+F+ Sbjct: 356 FPDAADYFAPLVLGLAVVGIFYGALLAIGQRDMKRLVAYTSLAHFGFIALGLFAFTSQAG 415 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 GA+ M++HGL + LF VG + R +RD+ AYGGL P A V ++ ++++ L Sbjct: 416 TGAVLYMVNHGLSTGLLFLVVGFLVTRRGSRDVGAYGGLAKVTPVLAGVFLLAGLSSLAL 475 Query: 387 PGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD 446 PGT+ F+ EFLV++ F + +A++A+ G+VL+A+Y L+LY++ + G E+ + L D Sbjct: 476 PGTNSFVSEFLVLVGTFTANKPLAIVATCGIVLAAIYVLYLYQRTMTGPVVHEENRVLHD 535 Query: 447 LSLRERCMVYPIAVLTVFFGIYPVPIRD 474 L LRE+ +V P+ L V G+YP P+ D Sbjct: 536 LGLREKVVVAPLVALIVALGVYPKPLLD 563 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ 108 +D ++ FQ + Y WI F SY +G DGIS++L++L L P +LSSW + Sbjct: 54 YDPDKAGFQFGQSYDWISTFGISYSVGADGISLVLMLLAALLVPVVVLSSWDEVD 108 >gi|166366962|ref|YP_001659235.1| NAD(P)H-quinone oxidoreductase subunit 4 [Microcystis aeruginosa NIES-843] gi|193806216|sp|B0JS85|NU4C2_MICAN RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 2; AltName: Full=NAD(P)H dehydrogenase I, chain 4 2; AltName: Full=NDH-1, chain 4 2 gi|166089335|dbj|BAG04043.1| NADH dehydrogenase subunit 4 [Microcystis aeruginosa NIES-843] Length = 553 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 172/463 (37%), Positives = 265/463 (57%), Gaps = 17/463 (3%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGR 59 N P+LS + LP L F+I + G R F ALG+ +FI +V+ +D Sbjct: 5 NFPWLSAIILLPLLASFLIPVIPDKEGKTVRWF---ALGVGLADFILMCYVFLQKYDLSN 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q++E W+ S+ + VDGIS LV+L +T IL++W+ + R + Sbjct: 62 PNLQLVEKIDWVPQIGLSWAVSVDGISAPLVLLAGLVTTLSILAAWQ-VDRKPRLFYFLM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L + IG F++ D+LLF++ +E LIP+++++ +WGG +R YAA KF LYT SIF+ Sbjct: 121 LLLYAAQIGVFVAQDLLLFFLMWEIELIPVYLLVSIWGGQKRRYAATKFLLYTAAASIFI 180 Query: 179 LFAIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A + M + D+ + +P +++ ++ +F +K+ +FP HTWLP+AH Sbjct: 181 LVAGLAMALYGGGAMTFDMAELGFKDYPLALELVLYAGLLIAFGVKLAIFPLHTWLPDAH 240 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A S+ LAG++LKMGGYG IR + L P A YFAP++ L ++ IIY + S Q Sbjct: 241 GEASAPVSMILAGVLLKMGGYGLIRLNMGLLPDAHIYFAPILAILGVVNIIYGAFASFGQ 300 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ +AYSS++HMG+V +GI S G+ GAM QMLSHGL+++ LFF GV YDR HT Sbjct: 301 QNMKRRLAYSSVSHMGFVLLGIASFTDVGISGAMLQMLSHGLIAAVLFFLAGVTYDRTHT 360 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN---SNTVAV-- 411 + GG+ MP+ + MA++ LPG SGF E V + V + S T V Sbjct: 361 LALNEMGGIAQAMPKVFALFTAGAMASLALPGMSGFASEITVFIGVTSSDVYSQTFRVVT 420 Query: 412 --LASFGVVLSALYSLWLYRKVVFGV-SKCEKVQQLKDLSLRE 451 LAS G++L+ +Y L + R+V +G S C+ L + S + Sbjct: 421 VFLASVGLILTPIYLLSMLRQVFYGDGSSCDITNILPNKSNEQ 463 >gi|126640821|ref|YP_001083805.1| NADH dehydrogenase subunit M [Acinetobacter baumannii ATCC 17978] Length = 493 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 174/438 (39%), Positives = 249/438 (56%), Gaps = 17/438 (3%) Query: 67 YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 Y WI HL VDG+S+L+V+LT L + SW IQ+N + + L V Sbjct: 33 YLPWIQSLGIGIHLAVDGLSLLMVLLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGV 92 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLF 180 IG FL++D+ LF+ F+E L+P++ +I +WG G R+YAA KFFLYT + ML Sbjct: 93 IGVFLAIDLFLFFFFWEMMLVPIYFLIALWGHKGSNGRSRVYAATKFFLYTQIAGLVMLI 152 Query: 181 AIV-VMCWEKKTSSIID------LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 I+ ++ + + +I L ++ P Y I FF FA+K+P+FP H WLP Sbjct: 153 GILGLVVYGYMMTGMIGFDYNYLLAVANRLPAGFAYGFMICFFIGFAVKLPVFPLHGWLP 212 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH QAPTAGSV LAGI++K YG +RF++P FP AS FA + LI I Y + + Sbjct: 213 DAHAQAPTAGSVDLAGILIKTAAYGLLRFVIPFFPAASAQFADIAIIFGLIGIFYGAWCA 272 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 QTD+K+L+AY+SI+HMG+V + I++G +G M ML+HGL S+ALF G IY+R Sbjct: 273 YQQTDMKRLLAYTSISHMGFVLLAIYAGNILTFQGLMIMMLAHGLSSAALFIMSGQIYER 332 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 LHTRD+ GGL + +M F A +G+PG FIGEFL++M F ++A Sbjct: 333 LHTRDLRLMGGLRGQLQYLPFFLMFFVAALVGVPGLGNFIGEFLILMGSFNKYPVFTIIA 392 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYP 469 S +V + LY L L + +FG E+ Q LKDLS RE ++ A+ V+ GIYP Sbjct: 393 SISLVFAGLYGLILIHRALFGEPNSEQKQHYTSPLKDLSAREVSILMICAIGLVWLGIYP 452 Query: 470 VPIRDTFSVPLSSIIENY 487 D + ++ +Y Sbjct: 453 QTFLDVSHSSMQWLVNSY 470 >gi|169797047|ref|YP_001714840.1| NADH dehydrogenase subunit M [Acinetobacter baumannii AYE] gi|184157040|ref|YP_001845379.1| NADH dehydrogenase subunit M [Acinetobacter baumannii ACICU] gi|213156547|ref|YP_002318208.1| NADH dehydrogenase I chain M membrane subunit [Acinetobacter baumannii AB0057] gi|215484508|ref|YP_002326743.1| NADH-quinone oxidoreductase subunit M [Acinetobacter baumannii AB307-0294] gi|239501283|ref|ZP_04660593.1| NADH dehydrogenase subunit M [Acinetobacter baumannii AB900] gi|260555661|ref|ZP_05827881.1| NADH:ubiquinone oxidoreductase subunit 4 [Acinetobacter baumannii ATCC 19606] gi|301347610|ref|ZP_07228351.1| NADH dehydrogenase subunit M [Acinetobacter baumannii AB056] gi|301512495|ref|ZP_07237732.1| NADH dehydrogenase subunit M [Acinetobacter baumannii AB058] gi|301595903|ref|ZP_07240911.1| NADH dehydrogenase subunit M [Acinetobacter baumannii AB059] gi|332852136|ref|ZP_08433963.1| NADH dehydrogenase subunit M [Acinetobacter baumannii 6013150] gi|332867535|ref|ZP_08437688.1| NADH dehydrogenase subunit M [Acinetobacter baumannii 6013113] gi|332872615|ref|ZP_08440583.1| NADH dehydrogenase subunit M [Acinetobacter baumannii 6014059] gi|169149974|emb|CAM87868.1| NADH dehydrogenase I chain M, membrane subunit [Acinetobacter baumannii AYE] gi|183208634|gb|ACC56032.1| NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Acinetobacter baumannii ACICU] gi|193076545|gb|ABO11203.2| NADH dehydrogenase I chain M membrane subunit [Acinetobacter baumannii ATCC 17978] gi|213055707|gb|ACJ40609.1| NADH dehydrogenase I chain M membrane subunit [Acinetobacter baumannii AB0057] gi|213988435|gb|ACJ58734.1| NADH-quinone oxidoreductase subunit M [Acinetobacter baumannii AB307-0294] gi|260410572|gb|EEX03870.1| NADH:ubiquinone oxidoreductase subunit 4 [Acinetobacter baumannii ATCC 19606] gi|322506939|gb|ADX02393.1| nuoM [Acinetobacter baumannii 1656-2] gi|323516806|gb|ADX91187.1| NADH dehydrogenase subunit M [Acinetobacter baumannii TCDC-AB0715] gi|332729508|gb|EGJ60847.1| NADH dehydrogenase subunit M [Acinetobacter baumannii 6013150] gi|332733952|gb|EGJ65097.1| NADH dehydrogenase subunit M [Acinetobacter baumannii 6013113] gi|332739144|gb|EGJ70003.1| NADH dehydrogenase subunit M [Acinetobacter baumannii 6014059] Length = 532 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 174/438 (39%), Positives = 249/438 (56%), Gaps = 17/438 (3%) Query: 67 YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 Y WI HL VDG+S+L+V+LT L + SW IQ+N + + L V Sbjct: 72 YLPWIQSLGIGIHLAVDGLSLLMVLLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGV 131 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLF 180 IG FL++D+ LF+ F+E L+P++ +I +WG G R+YAA KFFLYT + ML Sbjct: 132 IGVFLAIDLFLFFFFWEMMLVPIYFLIALWGHKGSNGRSRVYAATKFFLYTQIAGLVMLI 191 Query: 181 AIV-VMCWEKKTSSIID------LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 I+ ++ + + +I L ++ P Y I FF FA+K+P+FP H WLP Sbjct: 192 GILGLVVYGYMMTGMIGFDYNYLLAVANRLPAGFAYGFMICFFIGFAVKLPVFPLHGWLP 251 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH QAPTAGSV LAGI++K YG +RF++P FP AS FA + LI I Y + + Sbjct: 252 DAHAQAPTAGSVDLAGILIKTAAYGLLRFVIPFFPAASAQFADIAIIFGLIGIFYGAWCA 311 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 QTD+K+L+AY+SI+HMG+V + I++G +G M ML+HGL S+ALF G IY+R Sbjct: 312 YQQTDMKRLLAYTSISHMGFVLLAIYAGNILTFQGLMIMMLAHGLSSAALFIMSGQIYER 371 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 LHTRD+ GGL + +M F A +G+PG FIGEFL++M F ++A Sbjct: 372 LHTRDLRLMGGLRGQLQYLPFFLMFFVAALVGVPGLGNFIGEFLILMGSFNKYPVFTIIA 431 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYP 469 S +V + LY L L + +FG E+ Q LKDLS RE ++ A+ V+ GIYP Sbjct: 432 SISLVFAGLYGLILIHRALFGEPNSEQKQHYTSPLKDLSAREVSILMICAIGLVWLGIYP 491 Query: 470 VPIRDTFSVPLSSIIENY 487 D + ++ +Y Sbjct: 492 QTFLDVSHSSMQWLVNSY 509 >gi|300865275|ref|ZP_07110089.1| NAD(P)H-quinone oxidoreductase chain 4 1 [Oscillatoria sp. PCC 6506] gi|300336748|emb|CBN55239.1| NAD(P)H-quinone oxidoreductase chain 4 1 [Oscillatoria sp. PCC 6506] Length = 526 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 177/508 (34%), Positives = 287/508 (56%), Gaps = 34/508 (6%) Query: 2 NLPFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 N P+L+ V P F +F+ + G R ++ + +G+ I F ++ +D Sbjct: 5 NFPWLTTVILFPIFASLFIPIIPDKDGKTVR-WYALIVGLIDFALIVCAF-YTGYDINNP 62 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q++E Y W+ + +G DG+S+ L++LT F+T IL++W F+ + FL Sbjct: 63 GLQLVESYSWVPQIDLRWSVGADGLSMPLILLTGFITTLAILAAWPV---TFKPKLFYFL 119 Query: 120 VLE--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L I F DMLLF++ +E L+P+++I+ +WGG +R+YAA KF LYT GS+F Sbjct: 120 MLAMYGGQIAVFAVQDMLLFFLVWELELVPVYLILSIWGGKKRLYAATKFILYTAGGSLF 179 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L A + M + T + D+ A++ ++Q W++ F ++ +K+P+FP HTWLP+A Sbjct: 180 ILLAALAMAFYGDTVTF-DMRAIANKDIGLTLQLWLYGGFLIAYGVKLPIFPLHTWLPDA 238 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY R + P A FAP++ L ++ IIYA+L S Sbjct: 239 HGEATAPAHMLLAGILLKMGGYALFRMNAGMLPDAHAVFAPMLVILGVVNIIYAALTSFA 298 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IG+ S + G+ GA+ QM+SHGL+ ++LFF VG YDR H Sbjct: 299 QRNLKRKIAYSSISHMGFVLIGLGSFTELGMSGAVLQMVSHGLIGASLFFLVGCTYDRTH 358 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT------- 408 T + GG+ M + + +MA++ LPG SGF+ E +V + F S+ Sbjct: 359 TLMLDEMGGVGKKMKKVFAMWTACSMASLALPGMSGFVAELMVFVG-FATSDAYNPTFKV 417 Query: 409 -VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVL 461 V LA+ GV+L+ +Y L + R++++G E V+ L D RE C++ PI Sbjct: 418 IVVCLAAVGVILTPIYLLSMLREILYGPENKELVEHEALVDAEPREVFIIACLLVPI--- 474 Query: 462 TVFFGIYP---VPIRDTFSVPLSSIIEN 486 + G+YP + D +V L++ + + Sbjct: 475 -IGIGLYPKILTQVYDATTVQLTARLRD 501 >gi|159027152|emb|CAO86783.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 553 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 171/463 (36%), Positives = 265/463 (57%), Gaps = 17/463 (3%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGR 59 N P+L+ + LP L F+I + G R F ALG+ +FI +V+ +D Sbjct: 5 NFPWLTAIILLPLLASFLIPVIPDKEGKTVRWF---ALGVGLADFILMCYVFLQKYDLSN 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q++E W+ S+ + VDGIS LV+L +T IL++W+ + R + Sbjct: 62 PNLQLVEKIDWVPQIGLSWAVSVDGISAPLVLLAGLVTTLSILAAWQ-VDRKPRLFYFLM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L + IG F++ D+LLF++ +E LIP+++++ +WGG +R YAA KF LYT SIF+ Sbjct: 121 LLLYAAQIGVFVAQDLLLFFLMWEIELIPVYLLVSIWGGQKRRYAATKFLLYTAAASIFI 180 Query: 179 LFAIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A + M + D+ + +P +++ ++ +F +K+ +FP HTWLP+AH Sbjct: 181 LVAGLAMALYGGGAMTFDMAELGFKDYPLALELVLYAGLLIAFGVKLAIFPLHTWLPDAH 240 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A S+ LAG++LKMGGYG IR + L P A YFAP++ L ++ IIY + S Q Sbjct: 241 GEASAPVSMILAGVLLKMGGYGLIRLNMGLLPDAHIYFAPILAILGVVNIIYGAFASFGQ 300 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ +AYSS++HMG+V +GI S G+ GAM QMLSHGL+++ LFF GV YDR HT Sbjct: 301 QNMKRRLAYSSVSHMGFVLLGIASFTDVGISGAMLQMLSHGLIAAVLFFLAGVTYDRTHT 360 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN---SNTVAV-- 411 + GG+ MP+ + MA++ LPG SGF E V + V + S T V Sbjct: 361 LALNEMGGIAQAMPKVFALFTAGAMASLALPGMSGFASEITVFIGVTSSDVYSQTFRVVT 420 Query: 412 --LASFGVVLSALYSLWLYRKVVFGV-SKCEKVQQLKDLSLRE 451 LAS G++L+ +Y L + R+V +G S C+ L + S + Sbjct: 421 VFLASVGLILTPIYLLSMLRQVFYGDGSSCDITNILPNKSNEQ 463 >gi|293609130|ref|ZP_06691433.1| NADH dehydrogenase subunit I M [Acinetobacter sp. SH024] gi|292829703|gb|EFF88065.1| NADH dehydrogenase subunit I M [Acinetobacter sp. SH024] Length = 532 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 178/459 (38%), Positives = 253/459 (55%), Gaps = 27/459 (5%) Query: 67 YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 Y WI HL VDG+S+L+V+LT L + SW IQ+N + + L V Sbjct: 72 YLPWIQSLGIGIHLAVDGLSLLMVLLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGV 131 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLF 180 IG FL++D+ LF+ F+E L+P++ +I +WG G R+YAA KFFLYT + ML Sbjct: 132 IGVFLAIDLFLFFFFWEMMLVPIYFLIALWGHKGSNGRSRVYAATKFFLYTQIAGLVMLI 191 Query: 181 AIV-VMCWEKKTSSIID------LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 I+ ++ + + +I L + P + Y I FF FA+K+P+FP H WLP Sbjct: 192 GILGLVVYGYMMTGMIGFDYNYLLAVANHLPTGLAYGFMICFFIGFAVKLPVFPLHGWLP 251 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH QAPTAGSV LAGI++K YG +RF++P FP AS FA + LI I Y + + Sbjct: 252 DAHAQAPTAGSVDLAGILIKTAAYGLLRFVIPFFPTASAQFADIAIIFGLIGIFYGAWCA 311 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 QTD+K+L+AY+SI+HMG++ + I++G +G M ML+HGL S+ALF G IY+R Sbjct: 312 YQQTDMKRLLAYTSISHMGFILLAIYAGNILTFQGLMIMMLAHGLSSAALFIMSGQIYER 371 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 LHTRD+ GGL + +M F A +G+PG FIGEFL++M F +LA Sbjct: 372 LHTRDLRLMGGLRGQLQYLPFFLMFFVAALVGVPGLGNFIGEFLILMGSFNKYPVFTILA 431 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYP 469 S +V + LY L L + +FG E+ Q LKDLS RE ++ A+ V+ GIYP Sbjct: 432 SISLVFAGLYGLILIHRALFGEPNPEQKQHYTSPLKDLSAREVGILMICAIGLVWLGIYP 491 Query: 470 VPIRDTFS----------VPLSSIIENYTLKTGYSDSVK 498 D VP+ ++E D V+ Sbjct: 492 QTFLDVSHSSMQWLVNSYVPVQEVVETVQQTATQLDHVE 530 >gi|307153473|ref|YP_003888857.1| proton-translocating NADH-quinone oxidoreductase subunit M [Cyanothece sp. PCC 7822] gi|306983701|gb|ADN15582.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7822] Length = 562 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 267/446 (59%), Gaps = 22/446 (4%) Query: 4 PFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRSS 61 P+LS + LP + +F+ L G R + +A+GI+ +F+ +V W+ +D SS Sbjct: 7 PWLSTIVLLPLVASLFIPLLPDKEGKSVR-LYALAVGIA--DFVLMCYVFWNHYDLSNSS 63 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL- 119 FQ++E Y W+ ++ + VDG+S+ LV+L +T IL++W Q N + + FL Sbjct: 64 FQLVESYAWMPQIGLNWSVSVDGLSMPLVLLAGLVTTLSILAAW---QVNLKPRLFYFLI 120 Query: 120 -VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 VL S IG F++ D+LL +I +E LIP+++++ +WGG +R YAA KF LYT S+F+ Sbjct: 121 LVLYSAQIGVFVAQDLLLLFIMWELELIPVYLLVNIWGGQKRRYAATKFLLYTAAASVFI 180 Query: 179 LFAIVVMCW---EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L A + M E+ T I+ L M +P S++ ++ +F K+ +FP HTWLP+A Sbjct: 181 LVAALGMALYGGEQMTFDIVAL-GMKDYPLSLELVLYAGLLIAFGTKLAVFPLHTWLPDA 239 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A S+ LAG++LKMGGYG IR L +F A YFAPV+ L ++ IIY S Sbjct: 240 HGEASAPVSMILAGVLLKMGGYGLIRLNLEIFSDAHVYFAPVLVILGVVNIIYGGFNSFA 299 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q+++K+ +AYSS++HMG+V +GI S G+ GAM QM+SHGL+++ LFF GV YDR H Sbjct: 300 QSNMKRRLAYSSVSHMGFVLLGIASFTDLGISGAMLQMISHGLIAAVLFFLAGVTYDRTH 359 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN---SNT---- 408 T + G + MP+ + +MA++ LPG SGF E V + + + S+T Sbjct: 360 TLSLDNMGDIGRVMPKVFALFTAASMASLALPGMSGFASELSVFVGLTSSDVYSSTFRCV 419 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFG 434 +LA+ G++L+ +Y L + RK+ +G Sbjct: 420 TLILAAVGLILTPVYLLSMLRKLFYG 445 >gi|307328633|ref|ZP_07607806.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces violaceusniger Tu 4113] gi|306885745|gb|EFN16758.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces violaceusniger Tu 4113] Length = 554 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 186/508 (36%), Positives = 281/508 (55%), Gaps = 37/508 (7%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+ +P LG V + VALG S + + V FD G + Sbjct: 1 MSFPLLTATAVVPALGAVVTAAVPAAQRAAAKW--VALGFSLLTLALAAVVLVRFDPGGA 58 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSW------KSIQENFR- 112 FQ+ E + WI D+ Y LGVDGI++ L+ LT L PF IL+ W + + N R Sbjct: 59 HFQLTESHAWIKDFGVRYELGVDGIAVALIALTAVLIPFIILAGWHDADPLEGARPNSRW 118 Query: 113 ----EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------G 157 + L++E+MV+ +F + D+ LFYIFFEA LIPM+ +IG +G Sbjct: 119 RPTQGFFALILMVEAMVVISFEATDVFLFYIFFEAMLIPMYFLIGGFGDRAGGRSEEETA 178 Query: 158 SERIYAAYKFFLYTFFGSIFMLFAIV----VMCWEKKTSS-----IIDLYAMSKFPF--S 206 ++R YAA KF LY G + ML A+V V + T + I+ A S Sbjct: 179 TQRSYAAVKFLLYNLAGGLIMLAAVVGLYAVTADQLGTGTFSLQEIVQARAGGHLDMASS 238 Query: 207 IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 + +++ FF +FA+K P++P HTWLPNA +A T +V + ++ K+G + +RF L L Sbjct: 239 TERLLFLGFFFAFAVKAPLWPLHTWLPNAMGEATTPVAVLITAVVDKVGTFAMLRFCLQL 298 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 FP AS++ P I L+LI+IIY +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G Sbjct: 299 FPEASKWATPAIMILALISIIYGALLAIGQRDIKRLIAYASISHFGFIILGIFAMTTQGQ 358 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 GA M++HG+ ++AL G + R +R I YGG+ P A ++ +A + L Sbjct: 359 GGATLYMVNHGVSTAALMLVAGFLITRRGSRLIEDYGGVQKVAPVLAGTFLIGGLATLSL 418 Query: 387 PGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD 446 PG + FI EFLV++ F V+A+ G+VL+ALY L LY++ + G K E V+ + D Sbjct: 419 PGLAPFISEFLVLVGTFSRYPVFGVIATVGIVLAALYVLILYQRTMTGPVKAE-VRSMPD 477 Query: 447 LSLRERCMVYPIAVLTVFFGIYPVPIRD 474 L +RE +V P+ L +F G+YP P+ D Sbjct: 478 LRVRELVVVAPLIALLIFLGVYPKPLAD 505 >gi|56750126|ref|YP_170827.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus elongatus PCC 6301] gi|81300248|ref|YP_400456.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus elongatus PCC 7942] gi|81820739|sp|Q5N5W1|NU4C1_SYNP6 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 1; AltName: Full=NAD(P)H dehydrogenase I, chain 4 1; AltName: Full=NDH-1, chain 4 1 gi|123556826|sp|Q31NA0|NU4C1_SYNE7 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 1; AltName: Full=NAD(P)H dehydrogenase I, chain 4 1; AltName: Full=NDH-1, chain 4 1 gi|56685085|dbj|BAD78307.1| NADH dehydrogenase subunit 4 [Synechococcus elongatus PCC 6301] gi|81169129|gb|ABB57469.1| proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus elongatus PCC 7942] Length = 533 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 179/490 (36%), Positives = 279/490 (56%), Gaps = 14/490 (2%) Query: 4 PFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P+L+ + LP L I L G R ++ + +G++ + F W FD+ + Sbjct: 7 PWLTGIILLPILAALPIPLIPDKDGRTVR-WYSLFVGLADFALMVYAF-WQHFDRSEAGL 64 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 QM+E W+ ++ L VDG+S+ LV+LT +T IL+SW +I + + L+L Sbjct: 65 QMVEKISWVPQIGLNWSLAVDGLSMPLVLLTGLVTTLAILASW-NINVKPKLFHFLLLLL 123 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 I F + DM+LF++ +E L+P++++I +WGG +R YAA KF LYT S+F+L A Sbjct: 124 YGAQIAVFTAQDMMLFFLVWELELVPVYLLISIWGGPKRQYAATKFILYTALASLFILVA 183 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + S DL + +S+ + + F +F +K+ +FP HTWLP+AH +A Sbjct: 184 GLALAFSGDSFSF-DLTELGLKDYSLWLELLAYAGFLIAFGVKLSIFPLHTWLPDAHGEA 242 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 GS+ LAGI+LKMGGY IRF + L P A FAPV+ L ++ IIY +L + Q ++ Sbjct: 243 NAPGSMLLAGILLKMGGYALIRFNVQLLPEAHIRFAPVLAVLGIVNIIYGALNAFAQDNL 302 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+ IAYSSI+HMG+V +GI + G+ GA+ QMLSHGL+++ALFF GV Y+R HT I Sbjct: 303 KRKIAYSSISHMGFVLLGIAAYNSLGLNGALLQMLSHGLIAAALFFLAGVAYERTHTLQI 362 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM----SVFQNS-NTVAV-LA 413 GL MP + V MA++ LPG SGF+ E V + SV+ + TV + LA Sbjct: 363 PQISGLAKQMPITFALFTVTAMASLALPGMSGFVSELTVFLGFTDSVYSSGFRTVTILLA 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 + G+VL+ +Y L + R++ +G + Q L D RE + + + V T+ G YP Sbjct: 423 AVGLVLTPMYLLSMLRRIFYGTYNIQLGQVLADAKPRELFVAFCLLVPTLAIGFYPKLTT 482 Query: 474 DTFSVPLSSI 483 + V +++ Sbjct: 483 QVYDVTTTAL 492 >gi|33866793|ref|NP_898352.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. WH 8102] gi|81573785|sp|Q7U413|NU4C_SYNPX RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|33639394|emb|CAE08778.1| NADH dehydrogenase I chain 4 (or M) [Synechococcus sp. WH 8102] Length = 546 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 175/502 (34%), Positives = 282/502 (56%), Gaps = 27/502 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 +P+LS+ +P +G ++ F G G++ + ALG++ I F+ ++ + + +D S Sbjct: 16 TVPWLSLSILVPIVGALLVPFIPDSGDGKQIRW-YALGVTLITFLITVSAYLNGYDPSLS 74 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E W+ D ++ +G DG+S+ L++LT+F+T L++W +F+ + FL Sbjct: 75 GLQLSERVSWLPDLGLTWAVGADGLSMPLILLTSFITSLACLAAWPV---SFKPRLFYFL 131 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L + I F DMLLF++ +E LIP+++++ +WGG +R YAA KF LYT S+F Sbjct: 132 LLAMDGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLF 191 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L A + M + + + A++ F Q + +F +K+P+ P HTWLP+A Sbjct: 192 ILLAALAMGFFGGGTPSFEYTALAAKDFGSGFQLLCYAGLLIAFGVKLPIVPLHTWLPDA 251 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY +RF L P A FAP++ L ++ IIYA+L S Sbjct: 252 HGEATAPVHMLLAGILLKMGGYALLRFNCELLPAAHAQFAPLLIVLGVVNIIYAALTSFA 311 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IG+ S G GAM QM+SHGL+ ++LFF VG YDR H Sbjct: 312 QRNLKRKIAYSSISHMGFVLIGVGSFSALGTSGAMLQMISHGLIGASLFFLVGATYDRTH 371 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG+ M + V +A++ LPG SGF+ E +V + Sbjct: 372 TLQLDEMGGVGQKMRTMFALWTVCALASLALPGMSGFVSELMVFAGFATDEAYTLPFRVV 431 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLT 462 + LA+ GV+L+ +Y L + R++ FG K E V L D RE C++ PI Sbjct: 432 ICCLAAVGVILTPIYLLSMLREIFFGKEKQELVSHTNLVDAEPREVYIIGCLLVPI---- 487 Query: 463 VFFGIYPVPIRDTFSVPLSSII 484 + G+YP + D++S + +++ Sbjct: 488 IGIGLYPRLMTDSYSRSIEALV 509 >gi|212712287|ref|ZP_03320415.1| hypothetical protein PROVALCAL_03373 [Providencia alcalifaciens DSM 30120] gi|212685033|gb|EEB44561.1| hypothetical protein PROVALCAL_03373 [Providencia alcalifaciens DSM 30120] Length = 507 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 172/472 (36%), Positives = 262/472 (55%), Gaps = 21/472 (4%) Query: 36 VALGISTINFIFSLFVWSVFD------KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILL 88 VALG I ++ W D +G +Q WI ++ L VDG+S+L+ Sbjct: 31 VALGTMGTTLILAVLFWLQGDYSLVNPQGIPEWQNTYSTEWIPALGINFSLAVDGLSLLM 90 Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 VVLT + F ILSSW QEN Y L + + V+G F ++D+ LF+ F+E LIPM Sbjct: 91 VVLTAIMGAFSILSSWSEQQENQGAYHFNLLWIIAGVMGIFTAVDLFLFFFFWEMMLIPM 150 Query: 149 FVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV-------VMCWEKKTSSIID 196 + +I WG + + AA KFF+YT + ML +I+ + E + Sbjct: 151 YFLIANWGHKGSGNRQHVNAATKFFIYTQVSGLIMLVSIIGLVIVHFIESGELTFDYNLL 210 Query: 197 LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 L S + + + + FF +FA+K+P+ PFH W+ + Q+PTAGSV ++GIMLK Sbjct: 211 LGTESALSGTTSFLLMLGFFIAFAVKMPLVPFHGWMADTQEQSPTAGSVDISGIMLKTAA 270 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 YG +RF LPLFP AS F PV L +I+I Y + ++ QTDIK+L AYSS++HMG+VT+ Sbjct: 271 YGLLRFTLPLFPEASLQFTPVAMTLGVISIFYGAWLAFKQTDIKRLAAYSSLSHMGFVTV 330 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 I++G +GA+ QM+++GL +AL G +Y+R TRD+ GGL + + Sbjct: 331 AIYAGSTLAYQGAVVQMITNGLSGAALIIISGQLYERTQTRDMRMMGGLWKRIKWLPGLS 390 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 + F A +G+PGT FIGEF++ F V + FGVV +++Y+LW+ ++ +G Sbjct: 391 LFFAAATLGMPGTGNFIGEFMIFFGSFSQFTLVTCIMVFGVVFASIYALWMMQQTYYGTP 450 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 K + +LK L+ RE ++ +A L V G YP PI DT + + ++ Y+ Sbjct: 451 KSDT--ELKGLTAREFGVLLVLAALLVIIGFYPQPILDTSAGSMETLHNLYS 500 >gi|297159520|gb|ADI09232.1| NADH dehydrogenase subunit M [Streptomyces bingchenggensis BCW-1] Length = 549 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 185/508 (36%), Positives = 282/508 (55%), Gaps = 37/508 (7%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L++ +P LG + VALG S + + V FD + Sbjct: 1 MSFPLLTVTAAVPALGAVATAAVPAAKR--AAAKWVALGFSLATLVLAAIVLVSFDPDGA 58 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSW------KSIQENFR- 112 FQ+ E + WI D+ Y LGVDGI++ L+ LT L PF IL+ W + N R Sbjct: 59 HFQLTESHPWIKDFGVRYELGVDGIAVALIALTALLIPFIILAGWHDADPLEEASPNRRW 118 Query: 113 ----EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------G 157 + L++E+MV+ +F + D+ LFYIFFEA LIPM+ +IG +G Sbjct: 119 RPTQGFFALILMVEAMVVISFEATDVFLFYIFFEAMLIPMYFLIGGFGDRAGGRSEEESA 178 Query: 158 SERIYAAYKFFLYTFFGSIFMLFAIV----VMCWEKKTSS-----IIDLYAMSKFPF--S 206 ++R YAA KF LY G + ML A+V V + T + I D A F S Sbjct: 179 TQRSYAAVKFLLYNLAGGLIMLAAVVGLYVVTADDLGTGTFSLQQITDARAAGTLDFATS 238 Query: 207 IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 + +++ FF +FA+K P++P HTWLPNA +A + +V + ++ K+G + +RF L L Sbjct: 239 TERLLFLGFFFAFAVKAPLWPLHTWLPNAMGEATSPVAVLITAVVDKVGTFAMLRFCLQL 298 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 FP AS++ PVI L+LI+IIY +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G Sbjct: 299 FPEASKWATPVIMVLALISIIYGALLAIGQRDIKRLIAYASISHFGFIILGIFAMTTQGQ 358 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 GA M++HG+ ++AL G + R +R I YGG+ P A ++ +A + L Sbjct: 359 GGATLYMVNHGISTAALMLVAGFLITRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSL 418 Query: 387 PGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD 446 PG + FI EFLV++ F + ++A+ G+VL+ALY L LY++ + G K E V+ + D Sbjct: 419 PGLAPFISEFLVLVGTFSRYPALGIIATVGIVLAALYVLVLYQRTMTGPVKAE-VRGMPD 477 Query: 447 LSLRERCMVYPIAVLTVFFGIYPVPIRD 474 L +RE +V P+ L +F G+YP P+ D Sbjct: 478 LKVRELVVVAPLIALLIFLGVYPKPLTD 505 >gi|325121092|gb|ADY80615.1| NADH dehydrogenase I chain M [Acinetobacter calcoaceticus PHEA-2] Length = 532 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 178/459 (38%), Positives = 253/459 (55%), Gaps = 27/459 (5%) Query: 67 YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 Y WI HL VDG+S+L+V+LT L + SW IQ+N + + L V Sbjct: 72 YLPWIQSLGIGIHLAVDGLSLLMVLLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGV 131 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLF 180 IG FL++D+ LF+ F+E L+P++ +I +WG G R+YAA KFFLYT + ML Sbjct: 132 IGVFLAIDLFLFFFFWEMMLVPIYFLIALWGHKGSNGRSRVYAATKFFLYTQIAGLVMLI 191 Query: 181 AIV-VMCWEKKTSSIID------LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 I+ ++ + + +I L + P + Y I FF FA+K+P+FP H WLP Sbjct: 192 GILGLVVYGYMMTGMIGFDYNYLLAVANHLPAGLAYGFMICFFIGFAVKLPVFPLHGWLP 251 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH QAPTAGSV LAGI++K YG +RF++P FP AS FA + LI I Y + + Sbjct: 252 DAHAQAPTAGSVDLAGILIKTAAYGLLRFVIPFFPTASAQFADIAIIFGLIGIFYGAWCA 311 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 QTD+K+L+AY+SI+HMG++ + I++G +G M ML+HGL S+ALF G IY+R Sbjct: 312 YQQTDMKRLLAYTSISHMGFILLAIYAGNILTFQGLMIMMLAHGLSSAALFIMSGQIYER 371 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 LHTRD+ GGL + +M F A +G+PG FIGEFL++M F +LA Sbjct: 372 LHTRDLRLMGGLRGQLQYLPFFLMFFVAALVGVPGLGNFIGEFLILMGSFNKYPVFTILA 431 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYP 469 S +V + LY L L + +FG E+ Q LKDLS RE ++ A+ V+ GIYP Sbjct: 432 SISLVFAGLYGLILIHRALFGEPNPEQKQHYTSPLKDLSAREVGILMICAIGLVWLGIYP 491 Query: 470 VPIRDTFS----------VPLSSIIENYTLKTGYSDSVK 498 D VP+ ++E D V+ Sbjct: 492 QTFLDVSHSSMQWLVNSYVPVQEVVETVQQTATQLDHVE 530 >gi|22711913|ref|NP_683852.1| NADH dehydrogenase subunit 4 [Chaetosphaeridium globosum] gi|25008849|sp|Q8M9U1|NU4C_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|22416917|gb|AAM96517.1| subunit 4 of NADH-plastoquinone oxidoreductase [Chaetosphaeridium globosum] Length = 506 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 178/495 (35%), Positives = 282/495 (56%), Gaps = 30/495 (6%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFS--LFVWSVFDKGR 59 + P L+ +T P +I F G ++ L I I+F+ + +F++ +D Sbjct: 4 DFPLLTFITLFPISAGLLIPFLDKKGNQLVRWY--TLIICLIDFVITSYIFIYK-YDLNI 60 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q+I+ Y W+ + LGVDG+S+ L++LT+F+T LS+W I N R + Sbjct: 61 DTLQLIDDYAWVGPIEFHWKLGVDGLSMPLILLTSFITTLATLSAWP-ITRNSRLFYFLM 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S +G FLS D+LLF++ +E LIP+++++ +WGG R+YAA KF LYT GSIF+ Sbjct: 120 LAMYSGQLGVFLSQDILLFFLMWELELIPIYLLLSLWGGKRRLYAATKFILYTAVGSIFI 179 Query: 179 LFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A + M + ++D +++ ++P +++ +++ F +FA+K+P FP HTWLP+ H Sbjct: 180 LMAGLTMAFYNSNVPLLDFQSLANKQYPLALEIVLYLGFLIAFAVKLPAFPLHTWLPDTH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI++KMGGYG IR + L P A F+P I + I IIY +L S+ Q Sbjct: 240 GEAHYSTCMLLAGILIKMGGYGLIRINMELLPNAHVIFSPWIALIGGIQIIYGALTSLGQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSSI+HMG+V IGI S G+ GAM QM+SHGL+ + LFF G YDR+ T Sbjct: 300 RNLKRRIAYSSISHMGFVMIGISSFTDLGLSGAMMQMVSHGLIGAGLFFLAGTSYDRIRT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-------- 408 + GG+ MP+ + +A++ LPG SGF+ E +V + F SN Sbjct: 360 LFLDQMGGISTTMPKIFAMFTTCALASLALPGMSGFVAELMVFLG-FLKSNAYSFDFIAL 418 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVS-KCEKVQQLKDLSLRE----RCMVYPIAVLTV 463 + L + G++L+ +Y L + R++ +G L D S RE C+ PI + Sbjct: 419 ITFLEAVGIILTPIYLLSMLRQMFYGYRKLKLTNTLLLDASPREIFIMSCLFLPI----I 474 Query: 464 FFGIYP---VPIRDT 475 GIYP +P+ +T Sbjct: 475 GIGIYPNLTIPLWNT 489 >gi|299771408|ref|YP_003733434.1| NADH dehydrogenase subunit M [Acinetobacter sp. DR1] gi|298701496|gb|ADI92061.1| NADH dehydrogenase subunit M [Acinetobacter sp. DR1] Length = 532 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 176/449 (39%), Positives = 252/449 (56%), Gaps = 17/449 (3%) Query: 67 YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 Y WI HL VDG+S+L+V+LT L + SW IQ+N + + L V Sbjct: 72 YLPWIQSLGIGIHLAVDGLSLLMVLLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGV 131 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLF 180 IG FL++D+ LF+ F+E L+P++ +I +WG G R+YAA KFFLYT + ML Sbjct: 132 IGVFLAIDLFLFFFFWEMMLVPIYFLIALWGHKGSNGRSRVYAATKFFLYTQIAGLVMLI 191 Query: 181 AIV-VMCWEKKTSSIID------LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 I+ ++ + + +I L + P + Y I FF FA+K+P+FP H WLP Sbjct: 192 GILGLVVYGYMMTGMIGFDYNYLLAVANHLPPGLAYGFMICFFIGFAVKLPVFPLHGWLP 251 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH QAPTAGSV LAGI++K YG +RF++P FP AS FA + LI I Y + + Sbjct: 252 DAHAQAPTAGSVDLAGILIKTAAYGLLRFVIPFFPTASAQFADIAIIFGLIGIFYGAWCA 311 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 QTD+K+L+AY+SI+HMG++ + I++G +G M ML+HGL S+ALF G IY+R Sbjct: 312 YQQTDMKRLLAYTSISHMGFILLAIYAGNILTFQGLMIMMLAHGLSSAALFIMSGQIYER 371 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 LHTRD+ GGL + +M F A +G+PG FIGEFL++M F +LA Sbjct: 372 LHTRDLRLMGGLRGQLQYLPFFLMFFVAALVGVPGLGNFIGEFLILMGSFNKYPVFTILA 431 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYP 469 S +V + LY L L + +FG E+ Q LKDLS RE ++ A+ V+ GIYP Sbjct: 432 SISLVFAGLYGLILIHRALFGEPNPEQKQHYTSPLKDLSAREVGILMICAIGLVWLGIYP 491 Query: 470 VPIRDTFSVPLSSIIENYTLKTGYSDSVK 498 D + + +Y D+V+ Sbjct: 492 QTFLDVSHSSMQWFVNSYVPVQEVVDTVQ 520 >gi|21222957|ref|NP_628736.1| NADH dehydrogenase subunit M [Streptomyces coelicolor A3(2)] gi|256785929|ref|ZP_05524360.1| NADH dehydrogenase subunit M [Streptomyces lividans TK24] gi|289769822|ref|ZP_06529200.1| NuoM [Streptomyces lividans TK24] gi|5042265|emb|CAB44519.1| NuoM, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] gi|289700021|gb|EFD67450.1| NuoM [Streptomyces lividans TK24] Length = 523 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 170/500 (34%), Positives = 276/500 (55%), Gaps = 29/500 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L++ LP +G + + + ++T+ ++ V FD Sbjct: 1 MSFPLLTVTAALPAVGAIATAAVPAAKRTAAKWLALLVSLATLGLAIAVLVR--FDPDGD 58 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---------EN 110 +Q+ E + WI D+ Y LGVDGI++ L+ LT L PF IL+ W Sbjct: 59 RYQLTESHSWIADFGVRYELGVDGIAVALIALTALLIPFIILAGWHDADPLETGSSRWRP 118 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GSE 159 + + L +E+MVI +F + D+ LFYIFFEA LIP++ +IG +G ++ Sbjct: 119 TQGFFALILAVEAMVIISFEATDVFLFYIFFEAMLIPLYFLIGGFGDRAHEHGEKTAATQ 178 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPF--SIQYWMWIA 214 R YAA KF LY G + ML A++ V+ + I + A S + W+++ Sbjct: 179 RSYAAVKFLLYNLAGGLIMLAAVIGLYVVAGNFSLTEIAEARANGSLDMATSTERWLFLG 238 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF +FA+K P+FP HTWLPNA ++ +V + ++ K+G + +RF L LFP AS++ Sbjct: 239 FFFAFAVKAPLFPLHTWLPNAMGESTAPVAVLITAVVDKVGTFAMLRFCLQLFPEASKWA 298 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 PVI L++I+IIY +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G GA M+ Sbjct: 299 TPVILVLAVISIIYGALLAVGQRDIKRLIAYASISHFGFIIMGIFAMTSQGQSGATLYMV 358 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HG+ ++ L G + R +R I +GG+ P A ++ +A + LPG + F+ Sbjct: 359 NHGISTAVLMLIAGFLISRRGSRLIADFGGVQKVAPILAGTFLIGGLATLSLPGLAPFVS 418 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFLV++ F + ++A+ G+VL+ALY+L LY++ + G K E V + DL +RE + Sbjct: 419 EFLVLVGTFTRYPVIGIIATLGIVLAALYTLVLYQRTMTGPVKAE-VNGMPDLRVRELVV 477 Query: 455 VYPIAVLTVFFGIYPVPIRD 474 V P+ L +F G++P P+ D Sbjct: 478 VAPLVALLIFLGVFPKPVTD 497 >gi|262369344|ref|ZP_06062672.1| NADH dehydrogenase subunit M [Acinetobacter johnsonii SH046] gi|262315412|gb|EEY96451.1| NADH dehydrogenase subunit M [Acinetobacter johnsonii SH046] Length = 537 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 164/429 (38%), Positives = 246/429 (57%), Gaps = 19/429 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 HL VDG+S+L+V LT L + SW IQ+N + + L VIG FL++DM LF Sbjct: 86 HLAVDGLSLLMVGLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGVIGVFLAIDMFLF 145 Query: 138 YIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKT 191 + F+E L+P++ +I +WG G R+YAA KFF+YT + ML I+ ++ + Sbjct: 146 FFFWEMMLVPIYFLIALWGHKGAEGKSRVYAATKFFIYTQVAGLIMLIGILGLVVYGYMM 205 Query: 192 SSIIDL---------YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + +I + K ++ Y + F FA+K+P+FP H WLP+AH QAPTA Sbjct: 206 TGMIGFDYNYLLAVANTLDKELPTVAYAFMLCLFVGFAVKLPVFPLHGWLPDAHAQAPTA 265 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GSV LAGI++K YG +RF++P FP AS FA + LI I Y + + QTD+K+L Sbjct: 266 GSVDLAGILIKTAAYGLLRFVIPFFPAASAQFADIAIIFGLIGIFYGAWCAFQQTDMKRL 325 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 +AY+SI+HMG+V + I++G +G M ML+HGL S+ALF G +Y+R+HTRD+ Sbjct: 326 LAYTSISHMGFVLLAIYAGNILTFQGLMIMMLAHGLSSAALFIMCGQVYERVHTRDMRLM 385 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GG+ P A +M F A +G+PG FIGEFL++M + +LA+ +V + L Sbjct: 386 GGMRGQFPYLAFFLMFFVAALVGIPGLGNFIGEFLILMGSYAKFPVFTILAAVSLVFAGL 445 Query: 423 YSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 Y L L K +FG E+ Q LKDL++RE ++ A ++ G+YP D + Sbjct: 446 YGLILIHKALFGTPNEEQQQHYNNPLKDLNVREVVILLICAFGLLWLGLYPQSFLDISNS 505 Query: 479 PLSSIIENY 487 ++ + +Y Sbjct: 506 SMAWLANSY 514 >gi|254410963|ref|ZP_05024741.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Microcoleus chthonoplastes PCC 7420] gi|196182318|gb|EDX77304.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Microcoleus chthonoplastes PCC 7420] Length = 481 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 174/485 (35%), Positives = 276/485 (56%), Gaps = 25/485 (5%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P+L+++ P + I L G R ++ + +G+ I FV + +D Sbjct: 3 DFPWLTVIILFPIVASLGIPLLPDQNGVWER-WYALIVGLIDFTLIVCAFVIN-YDFDNP 60 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q++E Y W+ ++ +GVDG+S+ LV+LT F+T IL++W + + + L Sbjct: 61 GLQLVEKYAWVPTLDLNWSVGVDGLSMPLVLLTGFMTTLAILAAWP-VTLKPKLFYFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + I F DMLLF++ +E LIP+++++ +WGG +R+YAA KF LYT GS+F+L Sbjct: 120 AMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLSIWGGKKRLYAATKFILYTAGGSLFIL 179 Query: 180 FAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A + M + T + + A+ + +++ ++ AF S+ +K+P+FP HTWLP+AH + Sbjct: 180 IAALAMAFYGDTVTFDMRSLALKDYALNLELLLYAAFLISYGVKLPIFPLHTWLPDAHGE 239 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + LAGI+LKMGGY IR + P A YFAPV+ L ++ I+YA+L S Q + Sbjct: 240 ATAPVHMLLAGILLKMGGYALIRMNAGMLPDAHAYFAPVLVILGVVNIVYAALTSFAQRN 299 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ IAYSSI+HMG+V IGI S G+ GA+ QM+SHGL+ ++LFF VG YDR HT Sbjct: 300 LKRKIAYSSISHMGFVLIGIGSFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTLM 359 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT--------VA 410 + GG+ M + + +MA++ LPG SGF+ E +V + F S+ V Sbjct: 360 LDEMGGVGQKMRKIFAMWTTCSMASLALPGMSGFVAELMVFVG-FATSDAYNSTFKVIVV 418 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLTVF 464 LA+ GV+L+ +Y L R++ +G E V+ L+D RE C++ PI + Sbjct: 419 FLAAVGVILTPIYLLSNLREIFYGSENKELVEHEVLQDAEPREVFIIACLLVPI----IG 474 Query: 465 FGIYP 469 G+YP Sbjct: 475 IGLYP 479 >gi|262280135|ref|ZP_06057920.1| NADH:ubiquinone oxidoreductase subunit 4 [Acinetobacter calcoaceticus RUH2202] gi|262260486|gb|EEY79219.1| NADH:ubiquinone oxidoreductase subunit 4 [Acinetobacter calcoaceticus RUH2202] Length = 532 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 174/438 (39%), Positives = 250/438 (57%), Gaps = 17/438 (3%) Query: 67 YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 Y WI HL VDG+S+L+V+LT L + SW IQ+N + + L V Sbjct: 72 YLPWIQSLGIGIHLAVDGLSLLMVLLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGV 131 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLF 180 IG FL++D+ LF+ F+E L+P++ +I +WG G R+YAA KFFLYT + ML Sbjct: 132 IGVFLAIDLFLFFFFWEMMLVPIYFLIALWGHKGSNGRSRVYAATKFFLYTQIAGLVMLI 191 Query: 181 AIV-VMCWEKKTSSIID------LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 I+ ++ + + +I L + P ++ Y I FF FA+K+P+FP H WLP Sbjct: 192 GILGLVVYGYMMTGMIGFDYNYLLAVANHLPANLAYGFMICFFIGFAVKLPVFPLHGWLP 251 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH QAPTAGSV LAGI++K YG +RF++P FP AS FA + LI I Y + + Sbjct: 252 DAHAQAPTAGSVDLAGILIKTAAYGLLRFVIPFFPTASAQFADIAIIFGLIGIFYGAWCA 311 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 QTD+K+L+AY+SI+HMG++ + I++G +G M ML+HGL S+ALF G IY+R Sbjct: 312 YQQTDMKRLLAYTSISHMGFILLAIYAGNILTFQGLMIMMLAHGLSSAALFIMSGQIYER 371 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 LHTRD+ GGL + +M F A +G+PG FIGEFL++M F +LA Sbjct: 372 LHTRDLRLMGGLRGQLQYLPFFLMFFVAALVGVPGLGNFIGEFLILMGSFNKYPVFTILA 431 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYP 469 S +V + LY L L + +FG E+ Q LKDLS RE ++ A+ V+ GIYP Sbjct: 432 SISLVFAGLYGLILIHRALFGEPNPEQKQHYTSPLKDLSAREVGILMICAIGLVWLGIYP 491 Query: 470 VPIRDTFSVPLSSIIENY 487 D + ++ +Y Sbjct: 492 QTFLDMSHSSMQWLVNSY 509 >gi|301353470|ref|YP_003795691.1| NADH dehydrogenase subunit 4 [Phakopsora meibomiae] gi|253807594|gb|ACT36173.1| NADH dehydrogenase subunit 4 [Phakopsora meibomiae] Length = 477 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 176/479 (36%), Positives = 282/479 (58%), Gaps = 12/479 (2%) Query: 9 VTFLPFLGVFVILFSSYLGCG--RRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIE 66 + +PF+G + + G RR ++L + I + S+ +W FD + Q++ Sbjct: 7 IVIIPFIGAIHVSLTEGKNVGGIRR----LSLIYTCITYYISIMIWIEFDASKVGIQIVS 62 Query: 67 YYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI 126 + + F + GVDG+S+ V+LT P ++S + ++ + Y+ L+ +I Sbjct: 63 RFSDWEMF-NIAFGVDGLSVFFVILTALTIPIAVISGYYIENKDQKLYLSLILIFSGFII 121 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 F+SLD+++FY+ FEA L+P+ +++G++GG RI AAY FLYT FGS+ ML + + M Sbjct: 122 SVFISLDLIIFYVSFEAVLVPLTLLVGIYGGRRRISAAYILFLYTLFGSLPMLLSFLSMY 181 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 KT++I+ L MS + +W+ F A+K P+ PFH WL AH +A A SV Sbjct: 182 TITKTTNIVVLSIMS---YDYHNLIWLGIFIGLAVKTPLVPFHLWLKTAHAEANCAVSVV 238 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAG++LK+ Y IR L+ L P +QYF ++ +S+I+IIY + + + QTD K+L+AYS Sbjct: 239 LAGLVLKLATYAHIRVLIQLIPEQTQYFQSLVLVISIISIIYTAFICIRQTDFKQLVAYS 298 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGL 365 SI H+G V +GI+S +G+EG + +SHG+VS ALF V GVIYDR H R I Y GL Sbjct: 299 SINHIGIVCLGIYSNTVTGIEGGIILSISHGVVSPALFILVGGVIYDRYHDRTIRYYRGL 358 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 V +P +++ ++FT+ NM P T ++GEF+ + FQ + +LAS +V+SA YS+ Sbjct: 359 VTYIPLFSIFFLIFTLGNMATPLTGNWVGEFISLAGAFQTFPLITILASSSIVISACYSI 418 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 +LY ++ FG S + + D++ E ++ P+ +L + GIYP + D V SS+I Sbjct: 419 YLYNRICFG-SWSRYLNPVIDITRLEFHVLIPLLILIIALGIYPNIVLDYLHVSCSSLI 476 >gi|255318327|ref|ZP_05359562.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acinetobacter radioresistens SK82] gi|262379071|ref|ZP_06072227.1| NADH-quinone oxidoreductase subunit M [Acinetobacter radioresistens SH164] gi|255304639|gb|EET83821.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acinetobacter radioresistens SK82] gi|262298528|gb|EEY86441.1| NADH-quinone oxidoreductase subunit M [Acinetobacter radioresistens SH164] Length = 535 Score = 290 bits (741), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 172/438 (39%), Positives = 248/438 (56%), Gaps = 20/438 (4%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI + HL VDG+S+L+V LT L + SW IQ+N + + L VIG Sbjct: 75 WIQTLGINIHLAVDGLSLLMVGLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGVIGV 134 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++DM LF+ F+E L+P++ +I +WG G R+YAA KFF+YT + ML I+ Sbjct: 135 FLAIDMFLFFFFWEMMLVPIYFLIALWGHKGSNGRSRVYAATKFFIYTQVAGLIMLIGIL 194 Query: 184 --VMCWEKKTSSIIDLY--------AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 V+ T +I Y A+ S+ Y I F FA+K+P+FP H WLP Sbjct: 195 GLVIYGYMMTGTINFSYNYLLGVANALDTQLPSVAYAFMICMFIGFAVKLPVFPLHGWLP 254 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH QAPTAGSV LAGI++K YG +RF++P FP AS FA + LI I Y + + Sbjct: 255 DAHAQAPTAGSVDLAGILIKTAAYGLLRFVIPFFPAASADFANIAIIFGLIGIFYGAWCA 314 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 QTD+K+L+AY+SI+HMG+V + +++G +G M ML+HGL S+ALF G IY+R Sbjct: 315 FQQTDMKRLLAYTSISHMGFVLLALYAGNILTFQGLMIMMLAHGLSSAALFIMCGQIYER 374 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 LHTRD+ GG+ +M F A +G+PG FIGEFL++M + +LA Sbjct: 375 LHTRDMRLMGGIRGQFQYLPFFLMFFVAALVGIPGLGNFIGEFLILMGSYAKFPVFTILA 434 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYP 469 + +V + LY L L K +FGV E+ Q LKDL+ RE ++ A+ V+ G+YP Sbjct: 435 AVSLVFAGLYGLILIHKALFGVPNEEQKQHYSHPLKDLNAREMVILLICALGLVWLGLYP 494 Query: 470 VPIRDTFSVPLSSIIENY 487 D + ++ + +Y Sbjct: 495 QTFLDVSNSSMAWLANSY 512 >gi|187373194|ref|YP_001876506.1| NADH dehydrogenase subunit 4 [Beauveria bassiana] gi|164598938|gb|ABY61756.1| NADH dehydrogenase subunit 4 [Beauveria bassiana] Length = 482 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 164/431 (38%), Positives = 269/431 (62%), Gaps = 4/431 (0%) Query: 56 DKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 + + FQ I+ ++ + F Y LG+DGISI ++LTT + P +LS+W SI+EN + Y+ Sbjct: 51 NSSTNQFQYIQEHYNVQLFDIY-LGIDGISIYFILLTTIIMPIALLSNWDSIKENVKSYL 109 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 I L+LE++++ F++LD++LFYIFFE+ L P+F++IG++G ++ A+Y FLYT +GS Sbjct: 110 IIMLLLETLLLAVFMALDIMLFYIFFESILPPLFILIGIFGSDNKVNASYYLFLYTLWGS 169 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +F+L +I+ + ++ L+ ++ F ++ Q +++I F +FA+K P + WL A Sbjct: 170 LFLLLSILSISSIMGSTDFDTLFKLN-FEYTTQVFLFIGIFIAFAVKTPTIFLNNWLLKA 228 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV++P GS+ LAGI+LK+ YG R +LP+ P AS + VI+ +++I IIYAS ++ Sbjct: 229 HVESPLGGSIVLAGIVLKLSLYGIFRLILPMLPKASLDYTFVIYTIAVITIIYASFSTLR 288 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRL 354 TDIK+LIAYSS+ H IG FS G+EG++ L+HG VSS LF C GV+YDR Sbjct: 289 TTDIKELIAYSSVCHAAVYLIGAFSNTIQGLEGSIILGLAHGFVSSGLFICAGGVLYDRT 348 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 TR IF Y G+ MP +A++ + + N G P T FIGEF+ + + + + V A Sbjct: 349 GTRSIFFYRGVAQLMPIFAILFFILALGNCGAPLTLNFIGEFMSLYGIIERLPVLGVFAC 408 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 +V SA Y+++++ + FG S + + + D++ RE +++ + TV GIYP I Sbjct: 409 SSIVFSAAYTIYMFNRTAFGGSFTRFLDESVYDVNKREFILLFILVAFTVILGIYPSIIL 468 Query: 474 DTFSVPLSSII 484 + ++++I Sbjct: 469 NVLDYSMNNLI 479 >gi|282895749|ref|ZP_06303836.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Raphidiopsis brookii D9] gi|281199249|gb|EFA74115.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Raphidiopsis brookii D9] Length = 524 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 177/506 (34%), Positives = 277/506 (54%), Gaps = 30/506 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P+L+ + P +I +F + +G+ I + F ++ +D Sbjct: 5 NFPWLTTIILFPIAASLLIPIIPDKEGKTVRWFALIVGLIDFALIVAAF-YTGYDFSNPD 63 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI + +GVDG+S+ L++LT F+T L++W F+ + FL+ Sbjct: 64 LQLVESYSWIPQIDLKWSVGVDGLSMPLIILTGFITTLAALAAWPV---TFKPRLFYFLL 120 Query: 121 LE--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L I F DMLLF++ +E LIP+++++ +WGG +R YAA KF LYT GS+F+ Sbjct: 121 LAMYGGQIAVFAVQDMLLFFLVWELELIPVYLLLAIWGGKKRHYAATKFILYTAGGSLFI 180 Query: 179 LFAIVVMC-WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L + M + + + A+ + ++Q ++ F ++A+K+P+ P HTWLP+AH Sbjct: 181 LLGSLTMAFYGDNITFDMSSLALKDYALNLQLLLYAGFLIAYAVKLPIIPLHTWLPDAHG 240 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY IR + P A YFAPV+ L ++ IIYA+L S Q Sbjct: 241 EATAPVHMLLAGILLKMGGYALIRMNAQMLPDAHAYFAPVLVILGVVNIIYAALTSFAQR 300 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+VTIGI S G+ GA+ QM+SHGL+ ++LFF VG YDR HT Sbjct: 301 NLKRKIAYSSISHMGFVTIGIASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTL 360 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT--------V 409 + GG+ M + + +MA++ LPG SGF+ E +V + F S+ V Sbjct: 361 MLDEMGGVGKRMKKIFAMFTTCSMASLALPGMSGFVAELMVFVG-FATSDAYNPTFKVIV 419 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPIAVLTV 463 +L + GV+L+ +Y L + R++ +G E V Q L D RE C++ PI + Sbjct: 420 VLLMAIGVILTPIYLLSMLREIFYGQENDELVSHQALIDAEPREVFIIACLLVPI----I 475 Query: 464 FFGIYP---VPIRDTFSVPLSSIIEN 486 G YP I D +V L+ + + Sbjct: 476 GIGFYPKLLTQIYDATTVQLTQRLRD 501 >gi|170078578|ref|YP_001735216.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. PCC 7002] gi|193806215|sp|B1XHP2|NU4C1_SYNP2 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 1; AltName: Full=NAD(P)H dehydrogenase I, chain 4 1; AltName: Full=NDH-1, chain 4 1 gi|169886247|gb|ACA99960.1| NADH dehydrogenase subunit D2 [Synechococcus sp. PCC 7002] Length = 534 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 168/487 (34%), Positives = 276/487 (56%), Gaps = 27/487 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKG 58 + +P+L+ P L VI L G R + LG++ +F + W +D G Sbjct: 4 LQIPWLTTAIAFPLLAALVIPLIPDKEGKTIRWY---TLGVALTDFALLVTAFWQNYDLG 60 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 R+ FQ+ E + WI ++ LGVDG+S+ L++L T +T L++W ++ + + + Sbjct: 61 RTEFQLTENFAWIPQLGLNWSLGVDGLSMPLIILATLITTLATLAAW-NVTKKPKLFAGL 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 LV+ S IG F D+LLF+I +E L+P++++I +WGG +R+YAA KF LYT GS+F Sbjct: 120 ILVMLSAQIGVFAVQDLLLFFIMWELELVPVYLLISIWGGKKRLYAATKFILYTALGSVF 179 Query: 178 MLFAIVVMC-WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 +L + + + + + + + +P +++ + F F +K+P+FP HTWLP+AH Sbjct: 180 ILASTLALAFYGGDVTFDMQALGLKDYPLALELLAYAGFLIGFGVKLPIFPLHTWLPDAH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A S+ LAG++LKMGGYG IR + + P A FAP++ L ++ I+Y +L + Q Sbjct: 240 SEASAPVSMILAGVLLKMGGYGLIRLNMEMLPDAHIRFAPLLIVLGIVNIVYGALTAFGQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 T++K+ +A SSI+HMG+V +GI S G+ GA+ QMLSHG +++ALFF GV Y+R HT Sbjct: 300 TNLKRRLASSSISHMGFVLVGIASFTDLGMNGAVLQMLSHGFIAAALFFLSGVTYERTHT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TV 409 + G+ MP+ + MA++ LPG SGF+ E V + + NS+ + Sbjct: 360 LMMDEMSGIARLMPKTFAMFTAAAMASLALPGMSGFVSELTVFLGL-SNSDAYSYGFKAI 418 Query: 410 AV-LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL--KDLSLRE----RCMVYPIAVLT 462 A+ L + GV+L+ +Y L + R+V +G + +D RE C++ PI Sbjct: 419 AIFLTAVGVILTPIYLLSMLREVFYGKGSQAPLSLAAGEDAKPREIFVAVCLLAPI---- 474 Query: 463 VFFGIYP 469 + G+YP Sbjct: 475 IAIGLYP 481 >gi|261346146|ref|ZP_05973790.1| NADH-quinone oxidoreductase, M subunit [Providencia rustigianii DSM 4541] gi|282565799|gb|EFB71334.1| NADH-quinone oxidoreductase, M subunit [Providencia rustigianii DSM 4541] Length = 507 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 182/507 (35%), Positives = 284/507 (56%), Gaps = 26/507 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + + R+ +ALG I ++ +W D Sbjct: 1 MLLPWLILI---PFIGGLLSWQADRFN--HRAPRWIALGTMGTTLILAVLLWLQGDYSLV 55 Query: 57 --KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 +G +Q + + WI ++ L VDG+S+L+VVLT + F ILSSW Q+N Sbjct: 56 NPQGIPQWQDVYFREWIPALGINFSLAVDGLSLLMVVLTAIMGAFSILSSWSEKQQNQGA 115 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG--GSER---IYAAYKFF 168 Y L + + V+G F ++D+ LF+ F+E LIPM+ +I WG G+E I AA KFF Sbjct: 116 YHFNLLWIIAGVMGIFTAVDLFLFFFFWEMMLIPMYFLIANWGHKGTENRQHINAATKFF 175 Query: 169 LYTFFGSIFMLFAIV-VMCWEKKTSSIID------LYAMSKFPFSIQYWMWIAFFCSFAI 221 +YT + ML AI+ ++ K S + L S + + + FF +FA+ Sbjct: 176 IYTQVSGLIMLVAIIGLVLVHYKESDVFTFDYNQLLGTESAMSGITGFMLMLGFFIAFAV 235 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ PFH W+ + Q+PTAGSV ++GIMLK YG +RF LPLFP AS F PV L Sbjct: 236 KMPLVPFHGWMADTQEQSPTAGSVDISGIMLKTAAYGLLRFTLPLFPEASLAFTPVAMTL 295 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +I+I Y + ++ QTDIK+L AYSS++HMG+VT+ I++ +GA+ QM+++GL + Sbjct: 296 GVISIFYGAWLAFKQTDIKRLAAYSSLSHMGFVTVAIYATSVLAYQGAVIQMITNGLSGA 355 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 AL G +Y+R TRD+ GGL + + + F A +G+PGT FIGEF+++ Sbjct: 356 ALIIISGQLYERTQTRDMRMMGGLWKRIKWLPGMSLFFAAATLGMPGTGNFIGEFMILFG 415 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F V + FGVV +++Y+LW+ ++ +G+ K E +LK L+ RE ++ +A L Sbjct: 416 SFSQFTLVTCIMVFGVVFASIYALWMMQQTYYGMPKSET--ELKGLTAREFGVLLVLAAL 473 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIENYT 488 V G +P PI DT + + ++ Y+ Sbjct: 474 LVIIGFFPQPILDTSAGSMETLYNLYS 500 >gi|260551022|ref|ZP_05825227.1| NADH:ubiquinone oxidoreductase subunit 4 [Acinetobacter sp. RUH2624] gi|260405970|gb|EEW99457.1| NADH:ubiquinone oxidoreductase subunit 4 [Acinetobacter sp. RUH2624] Length = 532 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 177/459 (38%), Positives = 253/459 (55%), Gaps = 27/459 (5%) Query: 67 YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 Y WI HL VDG+S+L+V+LT L + SW IQ+N + + L V Sbjct: 72 YLPWIKSLGIGIHLAVDGLSLLMVLLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGV 131 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLF 180 IG FL++D+ LF+ F+E L+P++ +I +WG G R+YAA KFFLYT + ML Sbjct: 132 IGVFLAIDLFLFFFFWEMMLVPIYFLIALWGHKGSNGRSRVYAATKFFLYTQIAGLVMLI 191 Query: 181 AIV-VMCWEKKTSSIID------LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 I+ ++ + + +I L ++ P Y I FF FA+K+P+FP H WLP Sbjct: 192 GILGLVVYGYMMTGMIGFDYNYLLAVANRLPAGFAYGFMICFFIGFAVKLPVFPLHGWLP 251 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH QAPTAGSV LAGI++K YG +RF++P FP AS FA + LI I Y + + Sbjct: 252 DAHAQAPTAGSVDLAGILIKTAAYGLLRFVIPFFPAASAQFADIAIIFGLIGIFYGAWCA 311 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 QTD+K+L+AY+SI+HMG++ + I++G +G M ML+HGL S+ALF G IY+R Sbjct: 312 YQQTDMKRLLAYTSISHMGFILLAIYAGNILTFQGLMIMMLAHGLSSAALFIMSGQIYER 371 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 LHTRD+ GGL + +M F A +G+PG FIGEFL++M F +LA Sbjct: 372 LHTRDLRLMGGLRGQLQYLPFFLMFFVAALVGVPGLGNFIGEFLILMGSFNKYPAFTILA 431 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYP 469 S +V + LY L L + +FG E+ Q LKDLS RE ++ A+ V+ GI+P Sbjct: 432 SISLVFAGLYGLILIHRALFGEPNPEQKQHYTSPLKDLSAREVVILMICAIGLVWLGIFP 491 Query: 470 VPIRDTFS----------VPLSSIIENYTLKTGYSDSVK 498 D VP+ ++E D V+ Sbjct: 492 QTFLDVSHSSMQWLVNSYVPVQEVVETVQQTATQLDHVE 530 >gi|67922580|ref|ZP_00516087.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Crocosphaera watsonii WH 8501] gi|67855589|gb|EAM50841.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Crocosphaera watsonii WH 8501] Length = 528 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 177/529 (33%), Positives = 285/529 (53%), Gaps = 42/529 (7%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N P+L+ + P +I + G R + AL + I+F ++ ++ +D Sbjct: 7 NFPWLTTIILFPIAAALLIPIIPDKDGKTVRWY---ALTVGLIDFAIIVYAFYTGYDLSN 63 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q++E Y W+ + +G DG+++ L++LT F+T +++W F+ + F Sbjct: 64 PDLQLVESYAWVPQLDLKWSVGADGLAMPLILLTGFITTLATMAAWPV---TFKPKLFYF 120 Query: 119 LVLE--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L I F DMLLF++ +E L+P+++I+ +WGG R+YAA KF LYT GS+ Sbjct: 121 LMLAMYGGQIAVFAVQDMLLFFLVWELELVPVYLILSIWGGKRRLYAATKFILYTAGGSL 180 Query: 177 FMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F+L + M + T + + A P +Q +++ F ++ +K+P+FP HTWLP+A Sbjct: 181 FILLGALTMAFFGDTVTFDMATIAAKDIPLKLQLFLYAGFLIAYGVKLPIFPLHTWLPDA 240 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY IR + A YFAP++ L ++ I+YA+L S Sbjct: 241 HGEATAPAHMLLAGILLKMGGYALIRMNAQMLSDAHAYFAPILVILGVVNIVYAALTSFA 300 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S G+ GAM QM+SHGL+ ++LFF VG YDR H Sbjct: 301 QRNLKRKIAYSSISHMGFVLIGIASFTDIGMSGAMLQMISHGLIGASLFFMVGATYDRTH 360 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT------- 408 T + GG+ M + + +MA++ LPG SGF+ E +V + F S+ Sbjct: 361 TLMLDEMGGVGQKMKKVFAMWTTCSMASLALPGMSGFVAELMVFVG-FATSDAYNSTFKV 419 Query: 409 -VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRE----RCMVYPIAVL 461 + LA+ GV+L+ +Y L + R++++G E V K D RE C++ PI Sbjct: 420 IIVFLAAIGVILTPIYLLSMLREMLYGPENKELVSHTKLIDAEPREVFIIACLLIPI--- 476 Query: 462 TVFFGIYP---VPIRDTFSVPLS--------SIIENYTLKTGYSDSVKG 499 + G+YP I D+ + L+ S++E + + Y VK Sbjct: 477 -IGIGLYPKIVTQIYDSTTTQLTALLRQSVPSLVEEVEVASRYDLPVKA 524 >gi|226953541|ref|ZP_03824005.1| NADH dehydrogenase I subunit M, membrane subunit [Acinetobacter sp. ATCC 27244] gi|294649471|ref|ZP_06726895.1| NADH-quinone oxidoreductase subunit M [Acinetobacter haemolyticus ATCC 19194] gi|226835719|gb|EEH68102.1| NADH dehydrogenase I subunit M, membrane subunit [Acinetobacter sp. ATCC 27244] gi|292824641|gb|EFF83420.1| NADH-quinone oxidoreductase subunit M [Acinetobacter haemolyticus ATCC 19194] Length = 532 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 178/438 (40%), Positives = 256/438 (58%), Gaps = 17/438 (3%) Query: 67 YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 Y WI S HL VDG+S+L+V+LT L + SW IQ+N + + L V Sbjct: 72 YLPWIQTLGISIHLAVDGLSLLMVLLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGV 131 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLF 180 IG FL++D+ LF+ F+E L+P++ +I +WG G R+YAA KFFLYT + ML Sbjct: 132 IGVFLAIDLFLFFFFWEMMLVPIYFLIALWGHKGSNGRSRVYAATKFFLYTQIAGLIMLI 191 Query: 181 AIV-VMCWEKKTSSIIDL---YAMS---KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 I+ ++ + + +I Y M+ + P + Y + FF FA+K+P+FP H WLP Sbjct: 192 GILGLVVYGYMMTGMIGFDYNYLMAVAHRLPPEVAYAFMLCFFIGFAVKLPVFPLHGWLP 251 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH QAPTAGSV LAGI++K YG +RF++P FP AS FA + L LI I Y + ++ Sbjct: 252 DAHAQAPTAGSVDLAGILIKTAAYGLLRFVIPFFPAASAQFADIAIILGLIGIFYGAFLA 311 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 QTD+K+L+AY+SI+HMG++ + I++G +G M ML+HGL S+ALF G +Y+R Sbjct: 312 YQQTDMKRLLAYTSISHMGFILLAIYAGNILTFQGLMIMMLAHGLSSAALFIMSGQVYER 371 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 LHTRD+ GGL + +M F A +G+PG FIGEFL++M F T ++A Sbjct: 372 LHTRDLRLMGGLRGQLQYLPFFLMFFVAALVGVPGLGNFIGEFLILMGSFNTYPTFTIIA 431 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYP 469 + +V + LY L L K +FGV E+ Q LKDLS RE ++ AV V+ GIYP Sbjct: 432 AVSLVFAGLYGLILIHKALFGVPNPEQQQHYTSPLKDLSAREVSILMLCAVGLVWLGIYP 491 Query: 470 VPIRDTFSVPLSSIIENY 487 D + I+ +Y Sbjct: 492 QTFLDVSQSSMQWIVNSY 509 >gi|124302956|ref|YP_001023751.1| NADH dehydrogenase subunit 4 [Angiopteris evecta] gi|193806220|sp|A2T383|NU4C_ANGEV RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|110628354|gb|ABG79650.1| NADH-plastoquinone oxidoreductase subunit 4 [Angiopteris evecta] Length = 497 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 174/503 (34%), Positives = 288/503 (57%), Gaps = 25/503 (4%) Query: 2 NLPFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 +LP+L+I+ LP G+ + LF + G + LGI I F+ +++ F Sbjct: 3 SLPWLTIIVLLPICAGLLIPLFPNE---GNKIIRWYTLGICIIEFLLITYIFCCHFRIND 59 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S Q+ E Y+WID + LG+DG+S+ L++LT F+T L++W + N R + Sbjct: 60 QSLQLEEDYNWIDLINFHWRLGIDGLSMGLILLTGFVTTLATLAAWP-VTRNTRLFHFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S IG F S D+LLF+ +E LIP+++++ +WGG R+Y+A KF LYT GSIF+ Sbjct: 119 LAMYSGQIGLFASQDILLFFFMWELELIPIYLLLSIWGGKRRLYSATKFILYTAGGSIFL 178 Query: 179 LFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L + + + D+ +++ +P +++ ++ F ++A+K+P+FPFHTWLP+ H Sbjct: 179 LIGALTIGLYGNNGPLFDIQSLATRSYPIALEIIIYSGFLIAYAVKLPIFPFHTWLPDTH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMGGYG IR + L P A FAP + + I+YASL+S+ Q Sbjct: 239 GEAHYSTCMLLAGILLKMGGYGLIRINMELLPHAHAIFAPWMVMFGAVQIVYASLISLNQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSS++HMG+V IGI S G+ GA+ QM+SHGL +ALFF G YDR T Sbjct: 299 RNLKRRIAYSSVSHMGFVMIGIGSLTNIGLNGAILQMISHGLTGAALFFLAGTSYDRTRT 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TV 409 + GG+ +MP+ + +F++A++ LPG SGF+ E +V + + + N + Sbjct: 359 LFLDQLGGIAISMPKLFTMFSIFSLASLALPGMSGFVAELMVFLGIVISQNYSLTFKIVI 418 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRE----RCMVYPIAVLTVF 464 ++ + G++L+ +Y L + R++ +G + L D RE C++ PI + Sbjct: 419 TIIEAIGIILTPIYLLSMLRQMFYGYKIPNTLALSLIDSGPREIFISLCLLLPI----IG 474 Query: 465 FGIYPVPIRDTFSVPLSSIIENY 487 G+YP + ++ + I+ Y Sbjct: 475 IGLYPNLVLSLWNSEVEYILSQY 497 >gi|9838468|ref|NP_064081.1| orf288 [Beta vulgaris subsp. vulgaris] gi|323435102|ref|YP_004222319.1| hypothetical protein BevumaM_p084 [Beta vulgaris subsp. maritima] gi|9087330|dbj|BAA99474.1| orf288 [Beta vulgaris subsp. vulgaris] gi|317905657|emb|CBJ14053.1| hypothetical protein [Beta vulgaris subsp. maritima] gi|319439835|emb|CBJ17544.1| hypothetical protein [Beta vulgaris subsp. maritima] gi|320148083|emb|CBJ20745.1| hypothetical protein [Beta vulgaris subsp. maritima] Length = 288 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 141/263 (53%), Positives = 189/263 (71%) Query: 189 KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + ++ + + ++F Q ++WIAFF SFA+K+PM P H WLP AHV+APTAGSV LA Sbjct: 11 QTGTTDLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILA 70 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 GI+LK+G YG +RF +P+FP A+ F P I+ LS IAIIY SL ++ Q D+KK+IAYSS+ Sbjct: 71 GILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSV 130 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 AHM +VTIG+FS G+ G++ MLSHGLVSSALF CVGV+YDR TR + YGGLV Sbjct: 131 AHMNFVTIGMFSLNIQGIGGSILPMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVST 190 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 MP ++ + FT+ANM LPGTS FIGEFL+++ FQ ++ VA LA+ G++L A YSLWLY Sbjct: 191 MPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLY 250 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +VV G K + + + D + RE Sbjct: 251 NRVVSGNLKPDFLHKFSDPNGRE 273 >gi|213852654|ref|ZP_03382186.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 402 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 157/372 (42%), Positives = 237/372 (63%), Gaps = 11/372 (2%) Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFML 179 VIG FL++DM LF+ F+E L+PM+ +I +WG G RI AA KFF+YT + ML Sbjct: 20 VIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVML 79 Query: 180 FAIVVMCW-EKKTSSI--IDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 AI+ + + K +S+ + + P S ++Y + + FF +FA+K+P+ P H WLP+ Sbjct: 80 IAILALVFVHYKATSVWTFNYEELLNTPMSHGVEYLLMLGFFIAFAVKMPVVPLHGWLPD 139 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ +L +I I Y + ++ Sbjct: 140 AHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAF 199 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q DIK+LIAY+S++HMG+V I I++G + +GA+ QM++HGL ++ LF G +Y+RL Sbjct: 200 TQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERL 259 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 HTRD+ GGL M + M F +A +G+PGT F+GEF+++ +Q + V+++ Sbjct: 260 HTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFMILFGSYQVVPMITVIST 319 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 FG+V +++YSL + + FG +K + Q+L +SLRE ++ + VL V G YP PI Sbjct: 320 FGLVFASVYSLAMLHRAYFGKAKSQIASQELLGMSLRELFIILLLVVLLVLLGFYPQPIL 379 Query: 474 DTFSVPLSSIIE 485 DT + +I + Sbjct: 380 DTSHSAIGNIQQ 391 >gi|119489817|ref|ZP_01622572.1| NAD(P)H-quinone oxidoreductase subunit 4 [Lyngbya sp. PCC 8106] gi|119454245|gb|EAW35396.1| NAD(P)H-quinone oxidoreductase subunit 4 [Lyngbya sp. PCC 8106] Length = 540 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 167/465 (35%), Positives = 269/465 (57%), Gaps = 23/465 (4%) Query: 31 RSFFGVALGISTINFIFSLFV-WSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILL 88 R+ ALG+ ++ +F W+ ++ S FQ+ E Y WI ++ + VDG+S+ L Sbjct: 31 RTIRWYALGVGLLDLALIVFCFWTHYNLDNSGFQLSETYAWIPQLELNWSVAVDGLSMPL 90 Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 + LT F+ IL+SW ++ + R + L L S +G F + D+LLF++ +E L+P+ Sbjct: 91 IALTGFVNTLAILASW-NVTKKPRLFYALMLALYSAQLGVFAAQDLLLFFLMWELELVPV 149 Query: 149 FVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS--KFPFS 206 +++I +WGG +R+YAA KF LYT GS+F+L A + M + + D+ +S +P Sbjct: 150 YLLISIWGGQKRLYAATKFILYTALGSVFILAAALAMAFYGGNVTF-DMTELSHKNYPIF 208 Query: 207 IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 ++ ++ F ++ +K+P+FP HTWLP+AH +A S+ LAG++LKMGGYG IR + + Sbjct: 209 LELLLYAGFIIAYGVKLPIFPLHTWLPDAHSEASAPVSMILAGVLLKMGGYGLIRMNIEM 268 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 P A YFAPV+ L ++ I+Y +L + QT++K+ +AYSSI+HMG+V IGI S + G+ Sbjct: 269 LPNAHLYFAPVLAILGVVNIVYGALSAFAQTNLKRRLAYSSISHMGFVLIGIASLTELGL 328 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 GA+ QM+SHGL+++ LFF G+ Y+R HT + GG+ +MP+ + MA++ L Sbjct: 329 NGAVLQMISHGLIAAMLFFLTGITYERTHTLMMEKLGGIAESMPKVFALFTAGAMASLAL 388 Query: 387 PGTSGFIGEFLVIMSVFQNSNTVAVLAS-----------FGVVLSALYSLWLYRKVVFGV 435 PG SGF GE +S+F T V +S G++L+ +Y L L R+V +G Sbjct: 389 PGMSGFAGE----LSIFLGITTSNVYSSNFKVVVVGLAAVGLILTPIYLLNLLRQVFYGK 444 Query: 436 SKCEKV--QQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 + V D RE + + + V G+YP T+ V Sbjct: 445 NSFGLVIDDYQGDAKPREVAIAVCLLIPIVGIGVYPKLATRTYDV 489 >gi|292492177|ref|YP_003527616.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus halophilus Nc4] gi|291580772|gb|ADE15229.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus halophilus Nc4] Length = 498 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 161/425 (37%), Positives = 264/425 (62%), Gaps = 10/425 (2%) Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 G+ ++ + + WI +F +HL +DG+S+LLV+L FL +++SW IQ + Sbjct: 57 AGQGAWLVELDWPWIAHFGIRFHLALDGLSLLLVLLACFLGLMAVVASWTEIQYRVGFFH 116 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L + + VIG F++LD+ LF+ F+E L+PM+ +I +WG R+ AA+KFF++T Sbjct: 117 FNLLWVLTGVIGVFMALDLFLFFFFWEVMLVPMYFLIAIWGHERRLPAAFKFFIFTHSSG 176 Query: 176 IFMLFAIVVMCWEKKTSSII------DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 + +L AI+V+ W + + DL S P + +W+ + FF +F +K+P P H Sbjct: 177 LMLLVAILVLVWTHYQHTGVLTFDYFDLLGASLDP-NTAFWIALGFFIAFTVKLPAVPLH 235 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 +WLP+AH QA T GSV LAG++LK G YG +RF++PLFP + ++PVI L +I I+Y Sbjct: 236 SWLPDAHTQASTGGSVILAGVLLKTGAYGLLRFVVPLFPATAFDYSPVIMLLGVIGILYG 295 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 ++++ Q D+K+LIAYSSI+HMG+V +G+F+ ++GA+ QML+HG+ +ALF G Sbjct: 296 AVLAFAQQDVKRLIAYSSISHMGFVLLGVFAWNPVALQGAVMQMLAHGISVAALFMVAGA 355 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + +RLHTRD+ GGL PR A + + F +A +GLPG + F+GEFLV++ +Q S Sbjct: 356 LQERLHTRDMGRMGGLWSKAPRLAAISLFFAVAALGLPGLANFMGEFLVLLGTYQVSIAF 415 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A+ G++LS +Y+L + +K + G + E+ ++ D S + + + + + G+YP Sbjct: 416 TAAAALGLILSVVYALIMVQKTLHG--EAEEQRRFADFSTGDMAAMGAMIFILFWLGLYP 473 Query: 470 VPIRD 474 P+ D Sbjct: 474 QPVFD 478 >gi|262376766|ref|ZP_06069994.1| NADH:ubiquinone oxidoreductase subunit 4 [Acinetobacter lwoffii SH145] gi|262308476|gb|EEY89611.1| NADH:ubiquinone oxidoreductase subunit 4 [Acinetobacter lwoffii SH145] Length = 537 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 168/443 (37%), Positives = 250/443 (56%), Gaps = 30/443 (6%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI + HL VDG+S+L+V LT L + SW IQ+N + + L VIG Sbjct: 77 WIQTLGINIHLAVDGLSLLMVGLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGVIGV 136 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++D+ LF+ F+E L+P++ +I +WG G R+YAA KFF+YT + ML I+ Sbjct: 137 FLAIDLFLFFFFWEMMLVPIYFLIALWGHKGAEGKSRVYAANKFFIYTQVAGLVMLIGIL 196 Query: 184 -------VMCWEKK--------TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 M E + ++ +D ++ P ++ Y I F FA+K+P+FP Sbjct: 197 GLVTVGYTMTGEIRFDYNYLLGVANTLD----AQAP-AVAYAFMICLFIGFAVKLPVFPL 251 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP+AH QAPTAGSV LAGI++K YG +RF++P FP AS FA L LI I Y Sbjct: 252 HGWLPDAHAQAPTAGSVDLAGILIKTAAYGLLRFVIPFFPAASAQFADFAIILGLIGIFY 311 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + + QTD+K+L+AY+SI+HMG+V + I++G +G M ML+HG+ S+ALF G Sbjct: 312 GAWCAFQQTDMKRLLAYTSISHMGFVLLAIYAGNILTFQGLMIMMLAHGISSAALFIMCG 371 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 +Y+R+HTRD+ GG+ P A +M F A +G+PG FIGEFL++M + Sbjct: 372 QVYERVHTRDMRLMGGMRGQFPYLAFFLMFFVAALVGIPGLGNFIGEFLILMGAYAKFPA 431 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVF 464 +LA+ +V + LY L L K +FGV + Q LKDL+ RE ++ A ++ Sbjct: 432 FTILAAISLVFAGLYGLILIHKALFGVPNEAQQQHYTNPLKDLNAREIALLLICAFGLLW 491 Query: 465 FGIYPVPIRDTFSVPLSSIIENY 487 G+YP D + ++ + +Y Sbjct: 492 LGLYPQSFLDVSNSSMAWLANSY 514 >gi|297192775|ref|ZP_06910173.1| NADH dehydrogenase subunit I M (NuoM) [Streptomyces pristinaespiralis ATCC 25486] gi|197721036|gb|EDY64944.1| NADH dehydrogenase subunit I M (NuoM) [Streptomyces pristinaespiralis ATCC 25486] Length = 523 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 177/522 (33%), Positives = 288/522 (55%), Gaps = 31/522 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M+ P L+ LP +G V ++ + RR+ VAL S + + V F+ G Sbjct: 1 MSFPILTATAVLPAVGAIV---TAAVPATRRTAAKWVALLFSLATLVMAAIVLVRFEPGG 57 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--EN------ 110 +Q+ E + WI D+ Y LGVDGI +++V LT L PF IL+ W EN Sbjct: 58 DRYQLTESHAWIADFGVRYELGVDGIGVVMVALTALLIPFVILAGWHDADPLENKSSRWR 117 Query: 111 -FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GS 158 + + L++E+MV+ +F + D+ LFYI FEA LIPM+ +IG +G + Sbjct: 118 PTQGFFALILMVEAMVVLSFEATDVFLFYILFEAMLIPMYFLIGGFGDRAHSGTDENAAA 177 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPF--SIQYWMWI 213 +R YAA KF LY G + ML A++ V+ S I + A + + +++ Sbjct: 178 QRSYAAVKFLLYNLAGGLIMLAAVIGLYVVAGSFSLSEIAEARASGSLDMATTTERLLFL 237 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FAIK P++P HTWLPNA +A +V + ++ K+G + +RF L LFP AS++ Sbjct: 238 GFFFAFAIKAPLWPLHTWLPNAMGEATAPVAVLITAVVDKVGTFAMLRFCLQLFPEASKW 297 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 PVI L+L++I+Y +L+++ Q DIK+LIAY+S++H G++ +GIF+ G GA M Sbjct: 298 ATPVIIVLALVSIVYGALLAVGQRDIKRLIAYASVSHFGFIVLGIFAMTSQGQSGATLYM 357 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++AL G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 358 VNHGLSTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFV 417 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFLV++ F ++A+ G+VL+ALY+L LY++ + G + E V+ + DL +RE Sbjct: 418 SEFLVLVGTFAVYPVAGIIATLGIVLAALYTLVLYQRTMTGPVRTE-VRTMPDLKVRELA 476 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 +V P+ L +F G++P P+ + + + + + + D Sbjct: 477 VVAPLIALLLFLGVFPKPLTEIINPAVEHTMSDVQKQDPRPD 518 >gi|75907966|ref|YP_322262.1| NAD(P)H-quinone oxidoreductase subunit 4 [Anabaena variabilis ATCC 29413] gi|123609881|sp|Q3MCB9|NU4C1_ANAVT RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 1; AltName: Full=NAD(P)H dehydrogenase I, chain 4 1; AltName: Full=NDH-1, chain 4 1 gi|75701691|gb|ABA21367.1| NADH dehydrogenase subunit M [Anabaena variabilis ATCC 29413] Length = 525 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 178/507 (35%), Positives = 281/507 (55%), Gaps = 32/507 (6%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N P+L+ + LP +I + G R + AL + I+F ++ ++ +D Sbjct: 5 NFPWLTTIILLPIAASLLIPIIPDKDGKTIRWY---ALIVGLIDFALIVYAFYTSYDFAN 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q++E Y W+ ++ +G DG+S+ L++LT F+T L++W + R + Sbjct: 62 PDLQLVESYPWVPQLDLNWSVGADGLSMPLIILTGFITTLATLAAWP-VTLKPRLFYFLL 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + I F D+LLF++ +E LIP+++++ +WGG +R YAA KF LYT GS+F+ Sbjct: 121 LAMYGGQIAVFAVQDLLLFFLVWELELIPVYLLLAIWGGKKRQYAATKFILYTAGGSLFI 180 Query: 179 LFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A + M + + T + L A+ + + Q ++ F ++AIK+P+ P HTWLP+AH Sbjct: 181 LLAALTMAFYGDNVTFDMRSL-ALKDYALNFQLLLYAGFLIAYAIKLPIIPLHTWLPDAH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + LAGI+LKMGGY IR + P A YFAPV+ L ++ IIYA+L S Q Sbjct: 240 GEATAPAHMLLAGILLKMGGYALIRMNAGILPDAHAYFAPVLVVLGVVNIIYAALTSFAQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSSI+HMG+V IG S G+ GA+ QM+SHGL+ ++LFF VG YDR HT Sbjct: 300 RNLKRKIAYSSISHMGFVIIGFASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-------- 408 + GG+ MP+ + +MA++ LPG SGF+ E +V + F S+ Sbjct: 360 LMLDEMGGVGKRMPKIFAMFTACSMASLALPGMSGFVAELMVFVG-FATSDAYSSTFKVI 418 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPIAVLT 462 V L + GV+L+ +Y L + R++ +G E V QQL D RE C++ PI Sbjct: 419 VVFLMAVGVILTPIYLLSMLREIFYGKENEELVSHQQLIDAEPREVFVIACLLVPI---- 474 Query: 463 VFFGIYP---VPIRDTFSVPLSSIIEN 486 + G YP + D +V L++ + + Sbjct: 475 IGIGFYPKLLTQMYDATTVQLTARLRD 501 >gi|47117207|sp|Q85BG0|NU4C_ANTFO RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|46367699|dbj|BAC55401.2| NADH dehydrogenase ND4 subunit [Anthoceros formosae] Length = 501 Score = 289 bits (739), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 173/507 (34%), Positives = 286/507 (56%), Gaps = 26/507 (5%) Query: 2 NLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 N P+L+I+ LP G+ + L + G R LGI + F+ +++ + + Sbjct: 3 NFPWLTIIVLLPISAGLLIPLLPNK---GNRIIRWYTLGICLVEFLLITYIFCNYFHFDN 59 Query: 61 SF-QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 F ++ E Y+WI+ + LG+DG+SI L++LT F+T L++W I N R Sbjct: 60 QFIELKEDYNWINLLDFHWRLGIDGLSIGLILLTGFITTLATLAAWP-ITRNPRLSYFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S +G F S D+LLF+ +E LIP+++++ +WGG R+YAA KF LYT S+F+ Sbjct: 119 LAMYSGQVGLFASQDILLFFFMWELELIPVYLLLSMWGGKRRLYAATKFILYTAGSSVFL 178 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L + M +D ++ +P ++ +++ FF ++A+K+PM P HTWLP+ H Sbjct: 179 LMGALTMGLYGSDGPTLDFENLANRSYPIGLEIILYLGFFIAYAVKLPMVPLHTWLPDTH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMGGYG IR + L A FAP + + I I+Y++L S+ Q Sbjct: 239 GEAHYSTCMLLAGILLKMGGYGLIRINMELLSHAHSIFAPWLVVIGAIQIVYSALTSLSQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSS++HMG+V IGI S GV GA+ QM+SHGL+ +ALFF GV YDR T Sbjct: 299 LNLKRRIAYSSVSHMGFVLIGIGSTTDIGVNGAILQMISHGLIGAALFFSAGVTYDRTRT 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TV 409 + GG+ ++P+ + F+MA++ LPG SGF+ E ++ + + + N + Sbjct: 359 LFLNQMGGIATSIPKIFTMFSSFSMASLALPGLSGFVAELMIFLGIVSSQNFSFLFKVVI 418 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRE----RCMVYPIAVLTVF 464 ++A+ G++L+ +Y L + R++ +G + + + D RE C+ +PI + Sbjct: 419 IIVAATGIILTPIYLLSMLRQMFYGYRIIKNLTSYVTDAGPREIFIFICLFFPI----IG 474 Query: 465 FGIYPVPIRDTFSVPLSSIIE-NYTLK 490 G YP + + + SII N++ K Sbjct: 475 IGFYPKLVLSLSNSKVESIISGNFSSK 501 >gi|197285609|ref|YP_002151481.1| NADH-quinone oxidoreductase chain M [Proteus mirabilis HI4320] gi|227356112|ref|ZP_03840502.1| NADH-quinone oxidoreductase chain M [Proteus mirabilis ATCC 29906] gi|194683096|emb|CAR43650.1| NADH-quinone oxidoreductase chain M [Proteus mirabilis HI4320] gi|227163757|gb|EEI48669.1| NADH-quinone oxidoreductase chain M [Proteus mirabilis ATCC 29906] Length = 509 Score = 289 bits (739), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 180/519 (34%), Positives = 293/519 (56%), Gaps = 35/519 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD---- 56 M LP+L ++ PF+G + + +G + VAL + + S+ +W D Sbjct: 1 MLLPWLILI---PFIGGLLSWQAERIGSQVPRW--VALLTMGLTLVISVQLWLQGDYQLI 55 Query: 57 --KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 G + + WI + +DG+S+L+VVLT L +LSSW Q + Sbjct: 56 SVDGAPRWTEFYFVPWIPALGINIQFALDGMSLLMVVLTAILGILAVLSSWSENQPSQGA 115 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFF 168 + L + + V+G FL+ D+ LF+ F+E LIPM+ +I +WG + + AA KFF Sbjct: 116 FHFNLLWILAGVMGVFLATDLFLFFFFWEMMLIPMYFLISLWGHKGSSDEKHVSAATKFF 175 Query: 169 LYTFFGSIFMLFAIVVMC---------WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF 219 +YT + ML AI+ + W ++ L A + +Q+ + + FF +F Sbjct: 176 IYTQASGLLMLLAIIGLAVAFYSKTGIWTFNYDTL--LQAHTLLGSELQFILMLGFFAAF 233 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 A+K+P+ P H WL +AH +APTAGSV L+GI+LK YG +RF LPLFP AS APV Sbjct: 234 AVKMPIVPVHGWLADAHAEAPTAGSVDLSGILLKTAAYGLLRFNLPLFPEASALLAPVAM 293 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 +L LI + YA+L++ QTDIK+L AYSSI+HMG++ I I++G +GA+ QM+++GL Sbjct: 294 WLGLITVFYAALLAFRQTDIKRLAAYSSISHMGFIVIAIYAGSVLAYQGAIIQMITNGLS 353 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 ++ LF G++Y+RL TRD+ GGL ++ + F +A++G+PGT F+GEF+++ Sbjct: 354 AAGLFIMCGMLYERLGTRDMNQMGGLWKSIRFLPAFSLFFAVASLGMPGTGNFVGEFMIL 413 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIA 459 + + + +++ FG+V +++Y+LW+ ++ +G K + + K L+LRE +++ + Sbjct: 414 FGTYGHFKLITIISVFGLVFASVYALWMMQQAYYGSPKTAE-RTYKGLNLREFLILFILV 472 Query: 460 VLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSVK 498 VL V G +P P+ DT SI L+T YS S+ Sbjct: 473 VLLVILGFFPQPVLDT------SISAMENLQTWYSASLS 505 >gi|304312251|ref|YP_003811849.1| NADH-quinone oxidoreductase, subunit M [gamma proteobacterium HdN1] gi|301797984|emb|CBL46206.1| NADH-quinone oxidoreductase, subunit M [gamma proteobacterium HdN1] Length = 523 Score = 289 bits (739), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 162/429 (37%), Positives = 255/429 (59%), Gaps = 13/429 (3%) Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 G +Q W+ F + L DG+S+ L+VLT L + S+W I + + Sbjct: 63 SGSGVWQFALVADWMPLFGVKFFLAADGLSLALLVLTFGLGIVAVFSAWSEITDRSGFFY 122 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L + V G F +LD+LLF+ F+E LIPM+ +I +WG +R YAA KFF++T Sbjct: 123 FNLLWTLAGVAGIFSALDLLLFFFFWEVMLIPMYFLISLWGHEKREYAALKFFIFTQVSG 182 Query: 176 IFMLFAIVVMC---WEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 + ML +I+ + +++ D +++ + P + W+ + FF +F +K+P PFHT Sbjct: 183 LLMLLSIIALAFFHYQQTGVITFDYFSLRNTPLPEGVGIWVMLGFFVAFTVKLPSVPFHT 242 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH QAPTAGSV LAG++LK G YG +RF+LPLFP + FAP+ L +I+I+YA+ Sbjct: 243 WLPDAHTQAPTAGSVLLAGLLLKTGAYGLMRFILPLFPSQAAQFAPIAMLLGVISILYAA 302 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 ++ Q D K+LIAY+SI+HMG++ +GIFS ++GA+ QML+HG+ SSALF G + Sbjct: 303 KLAFAQLDFKRLIAYTSISHMGFILLGIFSANALAMQGAVIQMLAHGISSSALFAIAGSL 362 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 RLHTR GGL MP A + + F++A +G+PG F+GE LV+ FQ + + Sbjct: 363 QHRLHTRQFSRMGGLAKTMPNTAAMGVFFSIAALGMPGFGNFVGEALVLFGSFQVNPLLT 422 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKV-------QQLKDLSLRERCMVYPIAVLTV 463 +LA+ G++LS +Y+L + +KV ++ E + + +D ER + + V + Sbjct: 423 MLATVGMILSPIYALKIIQKVFHANAEAEPIGDALGEQARAEDFRFHERLSMGLMVVAIL 482 Query: 464 FFGIYPVPI 472 + G++P P+ Sbjct: 483 WLGVHPQPV 491 >gi|239828574|ref|YP_002951198.1| NADH dehydrogenase subunit M [Geobacillus sp. WCH70] gi|239808867|gb|ACS25932.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacillus sp. WCH70] Length = 508 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 173/504 (34%), Positives = 284/504 (56%), Gaps = 32/504 (6%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTI-NFIFSLFVWSVFDKGRSSFQ 63 FLS++ F P +G+ ++ F + G +ST+ + I SLF + + +G Sbjct: 6 FLSLLVFSPLVGILLLAFVPKTQERTIKWLGF---LSTLPSLILSLFAFVQYLRGYRLEH 62 Query: 64 MIEYYHWI-----------DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 + E + W+ + Y L +DG S++++VLT+ L ++S I++ ++ Sbjct: 63 LAEKHDWVRFADFPFLTESTFAIRYELSIDGFSLVMIVLTSLLATLAAVASIH-IKKEWK 121 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF 172 Y + FL+LE ++G F + +M+LF+IF E +L+PMF ++G WGG ER AAY + LY Sbjct: 122 GYFMLFLLLEIGMLGVFAAGNMILFFIFLEITLVPMFFLVGKWGGFERERAAYSYLLYNG 181 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF-----------SIQYWMWIAFFCSFAI 221 GS +L AI+V+ TS++ + M P ++ ++IA +F I Sbjct: 182 IGSAILLIAIIVLFARTGTSNVELVKEMLHNPAVEAQLVAPISNDLRLGLFIALLIAFGI 241 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ PFH W+ HVQAP + + +G++LK+G YG IRF + LFP + FA I L Sbjct: 242 KLPIVPFHRWILRVHVQAPPSIVMLHSGVLLKIGAYGLIRFGIGLFPDQFRDFAFWIAIL 301 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 ++ ++Y + ++ VQ D K ++AYSS++HMG V IG+ + ++G++GA+FQ +SHG +S+ Sbjct: 302 GVVNLLYGAFLAFVQDDFKMVLAYSSVSHMGIVLIGLGALNEAGIQGAIFQAVSHGFISA 361 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 LF V ++Y+R T I GGL MP A ++ MA++GLPG SGF+ EF + Sbjct: 362 LLFLLVSILYERTSTTMIDRLGGLAKVMPLTAGCLLAGAMASLGLPGMSGFVSEFTAFLG 421 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 +F+ VA + + G++++A+Y L + FG SK + VQ L D+SL E V+ + L Sbjct: 422 LFKTEPVVAAIGALGIIMTAVYLLRAVLNMTFGASKRDDVQAL-DMSLAEAIPVFVLLAL 480 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIE 485 V G+YP + PL + IE Sbjct: 481 IVMIGVYP----HILAKPLQATIE 500 >gi|330944412|gb|EGH46427.1| NADH:ubiquinone oxidoreductase subunit M [Pseudomonas syringae pv. pisi str. 1704B] Length = 409 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 163/398 (40%), Positives = 248/398 (62%), Gaps = 13/398 (3%) Query: 99 CILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS 158 +L SWK IQ + + + + V+G FL++D+ +F+ F+E L+PM+ +I +WG S Sbjct: 1 SVLCSWKEIQRKVGFFHLNLMWILGGVVGVFLAIDLFMFFFFWEMMLVPMYFLIALWGHS 60 Query: 159 E------RIYAAYKFFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYA---MSKFPFSI 207 RIYAA KFF++T + ML AI+ V+ +T I YA +K Sbjct: 61 SSDGKKTRIYAATKFFIFTQASGLIMLVAILGLVLVHFNQTGVITFAYADLLKTKLAPGT 120 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 +Y + + FF +FA+K+P+ P H+WLP+AH QAPTAGSV LAG++LK YG +RF LPLF Sbjct: 121 EYILMLGFFIAFAVKLPVVPLHSWLPDAHAQAPTAGSVDLAGLLLKTAAYGLLRFALPLF 180 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P AS FAP+ L L+ I Y + ++ QTDIK+LIA+SS++HMG+V IGI+SG + ++ Sbjct: 181 PNASAEFAPIAMTLGLVGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQ 240 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 G + QM++HGL ++ALF G +Y+RLH RD+ GGL + + + F A++GLP Sbjct: 241 GVLIQMIAHGLSAAALFILSGQLYERLHARDMREMGGLWSRIAYIPAISLFFAAASLGLP 300 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDL 447 GT F+GEFL+++ F +S + +A+ G+V ++YSL + + FG SK ++V LK + Sbjct: 301 GTGNFVGEFLILLGSFASSPWITAIATSGLVFGSVYSLIMIHRAYFGPSKSDEV--LKGM 358 Query: 448 SLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 RE MV +AVL V G++P P DT + + + + Sbjct: 359 DGREMIMVLGLAVLLVVLGVFPQPFLDTSAATMHGVQQ 396 >gi|108796791|ref|YP_636368.1| NADH dehydrogenase subunit 4 [Staurastrum punctulatum] gi|122233029|sp|Q32S08|NU4C_STAPU RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|61393559|gb|AAX45700.1| subunit 4 of NADH-plastoquinone oxidoreductase [Staurastrum punctulatum] Length = 524 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 174/483 (36%), Positives = 274/483 (56%), Gaps = 18/483 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 N P+L+I+T P +I G ++ ALGI I+F+ +V+ S FD Sbjct: 3 NYPWLTIITLFPISAGLLIPLIPNRGNNLIRWY--ALGICLIDFLLMTYVFGSQFDFYGQ 60 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E WI+ + +GVDG+SI LV+LT F+T L++W + N R + L Sbjct: 61 GIQLKEDISWINVIDFHWRVGVDGLSIALVLLTGFITTLATLAAWP-VTRNPRLFYFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S +G FL+ D+LLF+ +E LIP+++++ +WGG R+YAA KF LYT GSIF+L Sbjct: 120 AMYSGQLGLFLAQDLLLFFFMWELELIPVYLLLSMWGGRRRLYAATKFILYTAGGSIFLL 179 Query: 180 FAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 AI+ + I+D+ +SK +P ++ +++ F ++A+K+P+FPFHTWLP+ H Sbjct: 180 AAILTISLWGPNGPILDMETLSKQSYPLGLEILVYLGFLIAYAVKLPVFPFHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMGGYG IR + + A + FAP + L I+YA+LVS+ Q Sbjct: 240 EAHYSTCMLLAGILLKMGGYGFIRINIEMLSDAHRIFAPWLVALGAGQIVYAALVSIAQK 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSS++HMG+V IG S G+ GA+ QM+SHGL+ + LFF G YDR T Sbjct: 300 NLKRRIAYSSVSHMGFVLIGAGSFSDLGLSGAILQMISHGLIGAGLFFLAGTTYDRSRTL 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NTVA 410 + GG +P+ MA++ LPG SGF+ E ++ + + +S + Sbjct: 360 ILDDMGGWGSPLPKTFSTFTACAMASLALPGMSGFVAELMIFLGIVASSVYSPLFKAIIT 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVS----KCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 + G++L+ +Y L + RK+ +G + K K + D S RE ++ + V + G Sbjct: 420 CVEGIGIILTPIYLLSMVRKMFYGYNDISLKTLKDSLILDASPREVFIILSLLVPMLGIG 479 Query: 467 IYP 469 YP Sbjct: 480 FYP 482 >gi|200004086|ref|YP_002221536.1| NADH dehydrogenase subunit 4 [Hydra magnipapillata] gi|194578748|tpe|CAP49325.1| TPA: NADH dehydrogenase subunit 4 [Hydra vulgaris] Length = 484 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 166/365 (45%), Positives = 240/365 (65%), Gaps = 2/365 (0%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++ L VDGISI + L+ L P CIL S +SI+ +E+ I + ++IG F LD+L Sbjct: 75 NFILSVDGISIFFIGLSILLIPICILISLRSIKYFKKEFNILLFISVILLIGVFSILDVL 134 Query: 136 LFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 FYI FE+ LIP+F++IG+WG E+I AA+ FF YT GS+ ML +I + T++ Sbjct: 135 WFYILFESILIPVFIMIGIWGYREEKIKAAFYFFFYTLIGSLLMLISIFKLYSLIGTTNY 194 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +L + K P+ IQ+W++I FF A+KIPM PFH WLP AHV+AP AGS+ LAGI+LK+ Sbjct: 195 ENLLII-KIPYDIQFWLFIGFFIGLAVKIPMVPFHIWLPQAHVEAPIAGSILLAGILLKL 253 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG IRF P+FP ASQ++ P+I +S+IAI+Y +L + Q DIK+LIAYSS++HMG V Sbjct: 254 GGYGLIRFCYPIFPSASQFYYPLIIIISIIAIVYGALTTCRQIDIKRLIAYSSVSHMGLV 313 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 T+GIFS G+ G++ M++HGL SS LF +IY R H+R I + GL MP ++ Sbjct: 314 TVGIFSHSIEGLTGSILMMIAHGLSSSGLFIITSIIYFRFHSRIIKYFRGLTITMPILSI 373 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + + +AN+ P T FI E +I+S F+ S + +L GV ++ +YSLW+Y ++ FG Sbjct: 374 ITFILILANISFPLTLNFIAELFLIISAFKFSLFIILLILLGVFINLIYSLWVYNRIFFG 433 Query: 435 VSKCE 439 + Sbjct: 434 SNSIH 438 >gi|296268285|ref|YP_003650917.1| proton-translocating NADH-quinone oxidoreductase subunit M [Thermobispora bispora DSM 43833] gi|296091072|gb|ADG87024.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermobispora bispora DSM 43833] Length = 502 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 170/456 (37%), Positives = 282/456 (61%), Gaps = 8/456 (1%) Query: 40 ISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPF 98 IS + +L + FD FQ E Y WI F + +GVDGI+++L++L+ L P Sbjct: 34 ISLVVLALALAMAREFDPNGDRFQFTETYAWIPSFGIHFSVGVDGIALVLILLSAVLVPV 93 Query: 99 CILSSWKSIQ---ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 +L+SW + + R Y L+LE+M+IG F + D+ LFY+FFEA LIPM+ +IG + Sbjct: 94 VVLASWNEAEGGKRSVRTYFSLILLLEAMMIGVFAATDVFLFYVFFEAMLIPMYFMIGSY 153 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVM--CWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 GG++R YAA KF LY+ FG + ML A++ + K T DL + + Q W+++ Sbjct: 154 GGAQRSYAAVKFLLYSLFGGLLMLVAVIALYVIAGKNTFLFGDLVGTVQ-DATTQKWLFL 212 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FAIK P++PFHTWLP+A QAP +V L G++ K+G +G +R+ L LFP AS+Y Sbjct: 213 GFFIAFAIKAPLWPFHTWLPDAAAQAPAGSAVLLVGVLDKVGTFGMLRYCLELFPDASKY 272 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 F P++ L +I ++Y ++V++ QTD+K+LIAY+S++H G++ +G+F+ + GA M Sbjct: 273 FTPLVITLCVIGVVYGAIVAIGQTDMKRLIAYTSVSHFGFIALGVFAMTSNASAGATLYM 332 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG + ALF G + R ++ I YGG+ P A ++ ++++ LPG S F+ Sbjct: 333 VNHGFSTGALFLIAGFLISRRGSQFIADYGGVQKVAPVLAGTFLIAGLSSLSLPGLSPFV 392 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EF+V++ ++ V+A+ GV+L+A+Y LW+Y++++ G E V+++ DL+ RE+ Sbjct: 393 SEFMVLLGSYERFLWPTVIATTGVILAAIYILWMYQRMMNG-PTAEPVKRMPDLNAREKW 451 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTL 489 + P+ +L V FG YP P+ D + + S + + ++ Sbjct: 452 AIAPLILLLVVFGFYPKPLLDVINPAVKSTLASVSV 487 >gi|197259886|ref|YP_002149681.1| NADH dehydrogenase subunit 4 [Madracis mirabilis] gi|169809234|gb|ACA84072.1| NADH dehydrogenase subunit 4 [Madracis mirabilis] Length = 481 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 196/443 (44%), Positives = 276/443 (62%), Gaps = 8/443 (1%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLG-----VDGISILLVVL 91 AL S F +L WS FD G FQ W + F G VDG+S++ ++L Sbjct: 30 ALEWSLALFFSALVFWSGFD-GEGHFQFFSLVEW-NIFSILDWGPIVFAVDGVSLVFLLL 87 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 TTFL P CIL S KSI+ F+E+++ LE ++IG F+ D+LLFY+FFE LIPMF + Sbjct: 88 TTFLIPICILISQKSIKFLFKEFLLCLFFLEVLLIGVFIVFDLLLFYLFFEGILIPMFFL 147 Query: 152 IGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM 211 IG+WG E A +F + +F I + F I++ +++ ++ L K SIQ W Sbjct: 148 IGIWGSREEKVRASFYFFFFYFYRISLFFFIILFLYQRIGTTDYFLLLNIKLFLSIQKWA 207 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 + F SFA+K+P+ PFH WLP AHV+AP AGSV LAGI+LK+GGYG +RF PLFP AS Sbjct: 208 LVGVFLSFAVKLPLIPFHIWLPQAHVKAPVAGSVILAGILLKLGGYGLLRFSWPLFPGAS 267 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 Y++PVI F S++A++Y L++ Q D K+L+AYSS+AHMG V +G+F+ + G+ GA+F Sbjct: 268 LYWSPVIVFFSVVAVVYGGLMTCRQIDFKRLVAYSSVAHMGIVPLGLFTHVIEGLIGALF 327 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 ML+HG VSSALF V +YDR HTR I Y GL MP + + M++ ++ANMG P + Sbjct: 328 LMLAHGFVSSALFIGVTFLYDRHHTRLIKYYRGLTLTMPLFIITMLILSLANMGFPLSCN 387 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 F+GEF +++VFQ V + FGV+ SA+YSL L+ ++ FG + +DLS RE Sbjct: 388 FVGEFFSLLAVFQYHYGVGMFVIFGVLFSAIYSLSLFNRISFG-GGSNYLLFNRDLSRRE 446 Query: 452 RCMVYPIAVLTVFFGIYPVPIRD 474 ++ P ++ GI P PI D Sbjct: 447 IFVILPFLLIIFLGGIVPFPIID 469 >gi|300782463|ref|YP_003762754.1| NADH dehydrogenase I subunit M [Amycolatopsis mediterranei U32] gi|299791977|gb|ADJ42352.1| NADH dehydrogenase I subunit M [Amycolatopsis mediterranei U32] Length = 516 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 165/503 (32%), Positives = 277/503 (55%), Gaps = 33/503 (6%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 +L I+ +P G V+ ++L R+ ALG S + F+ + W + QM Sbjct: 3 WLLILILVPLAGSLVL---AFLKGNDRAAVLAALGFSILEFLLVIPFWLSYTASGPRLQM 59 Query: 65 IEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCI--LSSWKSIQENFRE--YMIAFL 119 + WI F + G DGIS++++ + L P + L + + ++ L Sbjct: 60 TSSFDWIPSFGVHIAFGTDGISLIMIAVIALLVPIVVGGLGTLDKLPPGRSAGGFLSLIL 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + E++ IG F + D+ LFY+ FE LIPM+ +IG +GG+ R YAA KFFLY+F G + ML Sbjct: 120 LQEALTIGVFAATDVFLFYVLFEIMLIPMYFLIGGYGGANRQYAAVKFFLYSFLGGLIML 179 Query: 180 FAIV---VMCWEKKTSSIID----LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 + + + +K D + + P S Q W+++ FF +FAIK P+ PFHTWL Sbjct: 180 ASAIGAYSLAADKLGKGTFDWATLVTVVRDAPLSTQIWLFLGFFLAFAIKAPLVPFHTWL 239 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+A +AP +V L G++ K+G +G +R+ LP+FP AS+ AP++ LS+I ++Y S++ Sbjct: 240 PDAAGEAPIGVAVLLVGVLDKVGTFGFLRYCLPMFPDASRTLAPLVLVLSVIGVLYGSIL 299 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q D+K+ IAY SIAH G++++GIF+ + + G+ ML+H L + L +G++ Sbjct: 300 AAGQRDMKRFIAYVSIAHFGFISLGIFAFNEQAMVGSATYMLNHSLATGMLIVVIGLVIA 359 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R + I YGG+ P A + ++ ++ + LPGT+ F+ EFLV++ F + +L Sbjct: 360 RGGSSRISDYGGMAKVTPLLAGLFLLAGLSTLSLPGTNSFVSEFLVLIGSFVDQPVYTIL 419 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKV------------------QQLKDLSLRERCM 454 A+ G+VL+A Y LWLY++V G + + + + ++DL+ RE + Sbjct: 420 ATVGMVLAAAYVLWLYQRVFQGPVRGDALVGVGGGPGTAIAPELGAKKAIRDLNGREIAI 479 Query: 455 VYPIAVLTVFFGIYPVPIRDTFS 477 + P+ VL + G YP P+ DT + Sbjct: 480 LAPLVVLILVLGFYPKPVLDTVT 502 >gi|284929076|ref|YP_003421598.1| NADH dehydrogenase subunit M [cyanobacterium UCYN-A] gi|284809535|gb|ADB95240.1| NADH dehydrogenase subunit M [cyanobacterium UCYN-A] Length = 525 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 170/507 (33%), Positives = 285/507 (56%), Gaps = 32/507 (6%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 N P+L+ + P + +I F ++ + +G+ I+FIF ++ + + +D Sbjct: 5 NFPWLTTIILFPIISALLIPFIPDENGKTVRWYALTVGL--IDFIFIVYAFYMGYDFNNP 62 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q++E Y WI + +G DG+S+ L+++T F+T I+++W F+ + FL Sbjct: 63 NLQLVESYSWISQIDLRWSVGTDGLSMPLILMTGFITTLAIMAAWPV---TFKPKLFYFL 119 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L I F DMLLF++ +E L+P+++I+ +WGG +R+YAA KF +YT GS+F Sbjct: 120 MLLMYGGQIAVFAVQDMLLFFLVWELELVPVYLILSIWGGKKRLYAATKFIIYTAGGSLF 179 Query: 178 MLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 +L A + + T + + + A P +Q ++ F ++ +K+P+FP HTWLP+AH Sbjct: 180 ILLAAFTLAFFGDTITFDMSIIASKDIPLKLQLLLYGCFLIAYGVKLPIFPLHTWLPDAH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + LAGI+LKMGGY +R + + P A YFAP++ L ++ IIYA+L + Q Sbjct: 240 GEATAPAHMLLAGILLKMGGYALLRMNVGMLPDAHVYFAPILIILGVVNIIYAALTAFAQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSSI+HMG+V IGI S G+ GAM QM+SHGL+ + LFF VG YDR HT Sbjct: 300 QNLKRKIAYSSISHMGFVLIGIASYTSIGLNGAMLQMISHGLIGAGLFFMVGATYDRTHT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-------- 408 + GG+ M + + +MA++ LPG SGF E ++ + F S+ Sbjct: 360 LMLDEMGGIGGKMKKIFAMWTTCSMASLALPGMSGFAAELMIFIG-FATSDAYNSIFKMV 418 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRE----RCMVYPIAVLT 462 V + A+ GV+L+ +Y L + +++++G + V K D RE C++ PI Sbjct: 419 VIIFAAVGVILTPIYLLSMLKEMLYGPENKDLVSHAKLIDAEPREVFIIGCLLIPI---- 474 Query: 463 VFFGIYPVPIRDTFSV---PLSSIIEN 486 + G+YP + +S L++++ N Sbjct: 475 ISIGLYPKIVTQMYSATTDQLNTLLRN 501 >gi|67923330|ref|ZP_00516812.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Crocosphaera watsonii WH 8501] gi|67854802|gb|EAM50079.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Crocosphaera watsonii WH 8501] Length = 566 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 159/437 (36%), Positives = 257/437 (58%), Gaps = 19/437 (4%) Query: 37 ALGISTINFIFSLFVW-SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 A+G++ +F+ +V+ +D S FQ++E Y W+ S+ + VDGIS+ LV+L Sbjct: 40 AMGVAIADFVLMCYVFVQHYDPSNSGFQLVEKYDWLPAIGLSWSVSVDGISMPLVLLAGL 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T + S+W+ + R + + L+L S IG F++ D+LL +I +E L+P++++I + Sbjct: 100 VTTLAMFSAWQ-VDHKPRLFYVLMLMLYSAQIGVFVAQDILLLFIMWELELVPVYLLISI 158 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW---EKKTSSIIDLYAMSKFPFSIQYWM 211 WGG +R YAA KF LYT SIF+L A + M W + T +++L + +P ++ ++ Sbjct: 159 WGGKKRQYAAMKFLLYTAAASIFILVAALAMGWYGGDNVTFDMVEL-GLKDYPLGLELFL 217 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 + +F +K+ +FP HTWLP+AH +A S+ LAG++LKMGGYG IR + L A Sbjct: 218 YAGLLVAFGVKLAIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYGLIRLNMGLLSDAH 277 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 YFAP++ L ++ I+Y +L S QT++K+ +AYSS++HMG+V +GI S G+ GAM Sbjct: 278 VYFAPILATLGVVNIVYGALTSFGQTNMKRRLAYSSVSHMGFVLLGIASFTDLGMSGAML 337 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 QMLSHGL+++ LFF GV YDR HT + G + MP+ + MA++ LPG SG Sbjct: 338 QMLSHGLIAALLFFLAGVTYDRTHTLALNDMGDIGEKMPKVFALFTAGAMASLALPGMSG 397 Query: 392 FIGEFLVIM-----SVFQNS-NTVAV-LASFGVVLSALYSLWLYRKVVFGVSKCE----- 439 F E V + ++ +S TV V L++ G++L+ +Y L + R++ +G K Sbjct: 398 FASEIAVFLGFTSSDIYSSSFRTVTVFLSAVGLILTPIYLLSMLRQLFYGTDKIPVCVIG 457 Query: 440 KVQQLKDLSLRERCMVY 456 + KD M + Sbjct: 458 DTDKRKDYQDNAEAMCF 474 >gi|218660062|ref|ZP_03515992.1| NADH-ubiquinone oxidoreductase chain M protein [Rhizobium etli IE4771] Length = 289 Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/281 (49%), Positives = 194/281 (69%), Gaps = 3/281 (1%) Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM--CWEKKTSSIIDLYAMSKFPF 205 M++IIGVWGG R+YAA+KFFLYT GS+ L ++V+ + S+ + L A PF Sbjct: 1 MYLIIGVWGGDGRVYAAFKFFLYTLAGSVLFLVGVIVLYFSGRRDPSTFLALTA-QDLPF 59 Query: 206 SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 +Q W++ AF +FA+K+PM P HTWLP+AHVQAPTAGS+ LAG++LKMG YG +RF LP Sbjct: 60 RVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKMGAYGFLRFSLP 119 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 + P AS Y++ ++ LS +AI+Y L+++ Q D+KKL+AYSSI+HMG+VT+GIF+ G Sbjct: 120 MLPEASVYYSTLMLSLSALAIVYGGLLALAQDDLKKLVAYSSISHMGFVTMGIFALNLRG 179 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 +EG + QM +HG+ + ALF VG+IY+R HTR I YGGL+ P Y + +F +++M Sbjct: 180 LEGGILQMFNHGVTTGALFLFVGLIYERTHTRSIADYGGLMKAAPVYTAFLALFILSSMA 239 Query: 386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 LPGT+ F+GE LV+ F + V A G +L A Y LW Sbjct: 240 LPGTNSFVGELLVLSGGFAANPAVGATAVLGALLGAAYLLW 280 >gi|319790458|ref|YP_004152091.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermovibrio ammonificans HB-1] gi|317114960|gb|ADU97450.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermovibrio ammonificans HB-1] Length = 483 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 160/414 (38%), Positives = 248/414 (59%), Gaps = 18/414 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 + HL VDGIS++L+ +T FL LSSW E + L+ ++G F SL++L Sbjct: 72 NLHLAVDGISLVLIAITAFLAITVTLSSWHV--ERPGAFFFLVLIFLGPMVGVFASLNLL 129 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 F+IF+E +L+PMF IG+WG RIYAA KFF+YT S+F+L I+V+ T Sbjct: 130 WFFIFWEFTLVPMFFHIGIWGAENRIYAAMKFFIYTHLASVFLLLGIIVLYLSTGTFEFE 189 Query: 196 DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 L + P I +WI F FA+K+P+ PFHTWLP+AHVQAP+ SVFLAG++LKMG Sbjct: 190 KLVGVHLSP-EIAKLVWILMFIGFAVKMPVVPFHTWLPDAHVQAPSPISVFLAGLLLKMG 248 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 YG +R+ L LFP S++FAP++ F++++ I YA ++ + IK+++AYSSI HMG+V Sbjct: 249 AYGLLRWELFLFPQTSKFFAPLMAFIAVLTIFYAGFRALAEDHIKRMVAYSSINHMGFVL 308 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 +G+ S +G+ A+++M+ H L+ S LF G I+ + HT I GGL+ +P + Sbjct: 309 LGLASLTAAGISAAIYEMVGHALIISLLFMIAGYIHHKTHTWYISELGGLMKKIPGLMTM 368 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 ++ +A +GLPGT+GF+GE V+++ F + ++ L A + +W+ ++ VFG Sbjct: 369 FVIGVLAAVGLPGTAGFVGELTVMLAAFDYYGWIMIIVPLASALGAGFFMWMLQRAVFGP 428 Query: 436 SKC--EKVQQLKDLSLRERCMVYPIAVLTVFF---GIYPV-------PIRDTFS 477 + E ++ LK+L L E P+A+ F G+ P P+ +TF+ Sbjct: 429 LREGFENLKSLKELPLVENV---PLAMYIAAFILVGVIPAVVFNLYNPVVNTFA 479 >gi|170078604|ref|YP_001735242.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. PCC 7002] gi|81323063|sp|Q8KX53|NU4C2_SYNP2 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 2; AltName: Full=NAD(P)H dehydrogenase I, chain 4 2; AltName: Full=NDH-1, chain 4 2 gi|22651987|gb|AAN03540.1|AF381036_1 NADH dehydrogenase subunit D1 [Synechococcus sp. PCC 7002] gi|169886273|gb|ACA99986.1| NADH dehydrogenase subunit D1 [Synechococcus sp. PCC 7002] Length = 526 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 179/508 (35%), Positives = 286/508 (56%), Gaps = 37/508 (7%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N P+LS + P + +F+ L G R + AL I I+F+ + ++ +D G Sbjct: 5 NFPWLSTIILFPIIAALFLPLIPDKDGKTVRWY---ALTIGLIDFVIIVTAFYTGYDFGN 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q++E Y W++ + +G DG+S+ L++LT F+T IL++W +F+ + F Sbjct: 62 PNLQLVESYTWVEAIDLRWSVGADGLSMPLILLTGFITTLAILAAWPV---SFKPKLFYF 118 Query: 119 LVL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L I F DMLLF+ +E L+P+++I+ +WGG +R+YAA KF LYT GS+ Sbjct: 119 LMLLMYGGQIAVFAVQDMLLFFFTWELELVPVYLILSIWGGKKRLYAATKFILYTAGGSL 178 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFF--CSFAIKIPMFPFHTWLPN 234 F+L A + M + T + D+ A+++ F I + + ++ +K+P+FP HTWLP+ Sbjct: 179 FILIAALTMAFYGDTVTF-DMTAIAQKDFGINLQLLLYGGLLIAYGVKLPIFPLHTWLPD 237 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH +A + LAGI+LKMGGY +R + P A F PV+ L ++ I+YA+L S Sbjct: 238 AHGEATAPAHMLLAGILLKMGGYALLRMNAGMLPDAHALFGPVLVILGVVNIVYAALTSF 297 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q ++K+ IAYSSI+HMG+V IG+ S G GAM QM+SHGL+ ++LFF VG YDR Sbjct: 298 AQRNLKRKIAYSSISHMGFVLIGMASFTDLGTSGAMLQMISHGLIGASLFFMVGATYDRT 357 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT------ 408 HT + GG+ M + + +MA++ LPG SGF+ E +V + F S+ Sbjct: 358 HTLMLDEMGGVGKKMKKIFAMWTTCSMASLALPGMSGFVAELMVFVG-FATSDAYSPTFR 416 Query: 409 --VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPIAV 460 + LA+ GV+L+ +Y L + R++++G E V ++L D RE C++ PI Sbjct: 417 VIIVFLAAVGVILTPIYLLSMLREILYGPENKELVAHEKLIDAEPREVFVIACLLIPI-- 474 Query: 461 LTVFFGIYPVPIRDTFSVPLSSIIENYT 488 + G+YP + + +S EN T Sbjct: 475 --IGIGLYPKAVTQIY----ASTTENLT 496 >gi|119510724|ref|ZP_01629851.1| NAD(P)H-quinone oxidoreductase subunit 4 [Nodularia spumigena CCY9414] gi|119464588|gb|EAW45498.1| NAD(P)H-quinone oxidoreductase subunit 4 [Nodularia spumigena CCY9414] Length = 561 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 170/445 (38%), Positives = 259/445 (58%), Gaps = 16/445 (3%) Query: 4 PFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRSS 61 P+L+ + LPF+ VI + G R + ALG+ + I + W +D +S Sbjct: 6 PWLTAIVLLPFIAALVIPVLPDKDGKWVRWY---ALGVGVADLILMCYAFWHNYDASNAS 62 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ+ E Y W+ ++ + VDG+S+ V+L +T I S+W+ + R + LV Sbjct: 63 FQLEENYTWMPQLGLNWTVAVDGLSLPFVLLAGLVTTLAIFSAWQ-VDRRPRLFYFLMLV 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L S +G F++ D++LF+I +E LIP++++I +WGG +R YAA KF LYT SIF+L Sbjct: 122 LYSAQVGVFVAKDLMLFFIMWEVELIPVYLLICIWGGQKRRYAATKFLLYTAAASIFILV 181 Query: 181 AIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A + M + DL A+ +P +++ ++ +F +K+ +FP HTWLP+AH + Sbjct: 182 AALAMGLYGGGNVTFDLAALGLKNYPLNLELLLYAGLLIAFGVKLAVFPMHTWLPDAHGE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + S+ LAG++LKMGGYG IR L + A YFAPV+ L ++ IIY +L S Q + Sbjct: 242 ASSPVSMILAGVLLKMGGYGLIRLNLGILSDAHIYFAPVLAILGVVNIIYGALNSFAQGN 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ +AYSSI+HMG+V +GI S G+ GAM QM+SHGL++S LFF GV YDR T Sbjct: 302 MKRRLAYSSISHMGFVLLGIASFTDLGISGAMLQMISHGLIASVLFFLAGVTYDRTRTMI 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN-------SNTVAV 411 + GG+ MP+ + + MA++ LPG SGF+GE V + + + S Sbjct: 362 MDDLGGIGQVMPKVFALFTISAMASLALPGMSGFVGELAVFIGITTSDVYSSAFSIVTVF 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVS 436 LA+ GV+L+ +Y L L RKV +G S Sbjct: 422 LAAVGVILTPIYLLNLLRKVFYGSS 446 >gi|257054404|ref|YP_003132236.1| NADH dehydrogenase subunit M [Saccharomonospora viridis DSM 43017] gi|256584276|gb|ACU95409.1| NADH dehydrogenase subunit M [Saccharomonospora viridis DSM 43017] Length = 534 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 160/483 (33%), Positives = 264/483 (54%), Gaps = 49/483 (10%) Query: 52 WSVFDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCI--LSSWKSIQ 108 W +D G Q + + WI + G+DGI+++++ +T L P I L+S + Sbjct: 47 WLAYDPGGERLQQVTSFDWIPALGVHVSFGIDGIALVMIAVTALLVPVVIGVLNSTDKLP 106 Query: 109 ENFRE--YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYK 166 E ++ LV E++ I F + D+ LFY+ FE L+PM+ +IG +GG +R YAA K Sbjct: 107 EGRSTGGFLSLILVQEALTIAVFAATDVFLFYVLFEIMLVPMYFLIGFYGGPKRQYAAVK 166 Query: 167 FFLYTFFGSIFML------FAIVVMCWEKKTSSIIDLYAM-SKFPFSIQYWMWIAFFCSF 219 FFLY+F G + ML +++ V + T L A+ S P Q W+++ FF +F Sbjct: 167 FFLYSFLGGLIMLASAIGAYSLAVDELGEGTFDWATLVAVVSDAPVDTQVWLFLGFFLAF 226 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 AIK P+ PFHTWLP+A QAP A +V L G++ K+G +G +R+ LP+FP AS+ AP++ Sbjct: 227 AIKAPLVPFHTWLPDAAGQAPVAVTVLLVGVLDKVGTFGFLRYSLPMFPDASEQLAPLVL 286 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 L+++ ++Y S+++ Q D+K+ +AY SIAH G++ +GIF+ G+ ML+H L Sbjct: 287 TLAVLGVVYGSILAAGQQDMKRFVAYVSIAHFGFIALGIFAFTPQATVGSATYMLNHSLA 346 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 + L +G++ R + I YGG+ P ++++ M+ + LPGT+ FI EFLV+ Sbjct: 347 TGMLILVLGIVAARGGSTQISDYGGMFKLTPILGGMLLLAGMSTLSLPGTNSFISEFLVL 406 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC--------------------- 438 + F + A++A+ G+VL+A Y LWLY++++ G K Sbjct: 407 LGAFDSRPVFAIIATLGLVLAAAYVLWLYQRIMTGPVKGAALVDVSDDVAPESAVGGGGS 466 Query: 439 -----------EKV-----QQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 EK + ++DLS +E ++ P+ VL V G YP P+ DT + + + Sbjct: 467 GEGGTATAVAPEKTTTTTRKAIRDLSGKEIAVLAPLVVLIVGLGFYPKPVLDTVTPSVEA 526 Query: 483 IIE 485 ++ Sbjct: 527 TLQ 529 >gi|209526558|ref|ZP_03275084.1| proton-translocating NADH-quinone oxidoreductase, chain M [Arthrospira maxima CS-328] gi|209493064|gb|EDZ93393.1| proton-translocating NADH-quinone oxidoreductase, chain M [Arthrospira maxima CS-328] Length = 534 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 168/505 (33%), Positives = 282/505 (55%), Gaps = 28/505 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P+L+I P + + F ++ + +G+ + I F + +D Sbjct: 5 NFPWLTITILFPIVASLFLPFIPDKEGKTVRWYALIVGLIDFSIIVYAFC-TGYDLNTPG 63 Query: 62 FQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y W+ + S+ +G DG+S+ L++LT F+T IL++W F+ + FL+ Sbjct: 64 LQLVERYDWLPEIGLSWSVGADGLSMPLIILTGFITTLAILAAWPV---TFKPKLFYFLM 120 Query: 121 LE--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L I F DMLLF++ +E L+P+++I+ +WGG +R+YAA KF LYT GS+F+ Sbjct: 121 LAMYGGQIAVFAVQDMLLFFLVWELELVPVYLILSIWGGKKRLYAATKFILYTAGGSLFI 180 Query: 179 LFAIVVMC-WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L A + M + + + A+ FP +Q ++ F ++ +K+P+FP HTWLP+AH Sbjct: 181 LVAALTMAFYGDAVTFDMQAIAIKDFPIKLQLLLYGGFLIAYGVKLPIFPLHTWLPDAHG 240 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +R + + P A FAP++ L ++ I+YA+ S Q Sbjct: 241 EATAPAHMLLAGILLKMGGYALLRMNVGMLPDAHATFAPILVILGVVNIVYAAFTSFAQR 300 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IG+ S + G+ GAM QM+SHGL+ ++LFF VG YDR HT Sbjct: 301 NLKRKIAYSSISHMGFVLIGMGSFTEIGLSGAMLQMISHGLIGASLFFLVGCTYDRTHTL 360 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV------ 411 + GG+ M + + +MA++ LPG SGF+ E +V + + + A Sbjct: 361 MLDEMGGVGLKMKKVFAMWTTCSMASLALPGMSGFVAELMVFIGIATSDAYNATFKVLVV 420 Query: 412 -LASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPIAVLTVF 464 LA+ GV+++ +Y L + R++++G E ++L D RE C++ PI + Sbjct: 421 FLAAVGVIITPIYLLSMLREILYGPENQELTSHEKLVDAEPREVFVIACLLVPI----IG 476 Query: 465 FGIYP---VPIRDTFSVPLSSIIEN 486 G+YP + D+ + L++++ Sbjct: 477 IGLYPKVVTQMYDSTTTQLTALMRQ 501 >gi|87301832|ref|ZP_01084666.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. WH 5701] gi|87283400|gb|EAQ75355.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. WH 5701] Length = 564 Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 173/502 (34%), Positives = 281/502 (55%), Gaps = 27/502 (5%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRSSF 62 P+LS+ +P +I F G G+ + ALG++ + F+ + + + +D + Sbjct: 28 PWLSVSILMPIAAALLIPFIPDPGDGK-TIRWYALGVALVTFLVTAGAYLNGYDPSVAGL 86 Query: 63 QMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+IE W+ D ++ +G DG+S+ L++LT+F+T +L++W F+ + FL+L Sbjct: 87 QLIERVEWVPDLGLAWSVGADGLSMPLILLTSFITALAVLAAWPV---TFKPRLFYFLIL 143 Query: 122 --ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + I F DMLLF++ +E L+P+++++ +WG +R YAA KF LYT GS+F+L Sbjct: 144 AMDGGQIAVFAVQDMLLFFLSWELELLPVYLLLAIWGAKKRQYAATKFILYTAGGSVFIL 203 Query: 180 FAIVVMCWEKKTSSIID--LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A + M + + + A +F Q + +F +K+P+ P HTWLP+AH Sbjct: 204 LAALAMGFHGGGAPNFEYTTLAAKEFGTRFQVLAYAGLLIAFGVKLPIVPLHTWLPDAHG 263 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +RF + L P A FAP++ L ++ IIYA+L S Q Sbjct: 264 EATAPVHMLLAGILLKMGGYALLRFNVQLLPDAHAQFAPLLVVLGVVNIIYAALTSFAQR 323 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR HT Sbjct: 324 NLKRKIAYSSISHMGFVLIGIGSFSALGTSGAMLQMVSHGLIGASLFFLVGATYDRTHTL 383 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ M + + V ++A++ LPG SGF+ E +V + + +A Sbjct: 384 QLDEMGGVGQKMRKMFALWTVCSLASLALPGMSGFVSELMVFVGFVTSEAYSLSFRIVMA 443 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRE----RCMVYPIAVLTVF 464 LA+ GV+L+ +Y L + R++ FG E V K D RE C++ PI + Sbjct: 444 ALAAVGVILTPIYLLSMLREIFFGKENTELVSHTKLVDAEPREIYVISCLLVPI----IG 499 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G+YP + D++ + ++++ Sbjct: 500 IGLYPRLMTDSYRASIEALVQR 521 >gi|326632072|gb|ADZ99038.1| NADH dehydrogenase subunit 4 [Physarum polycephalum] Length = 481 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 167/399 (41%), Positives = 250/399 (62%), Gaps = 4/399 (1%) Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLS 131 + +Y +D IS++ ++L+TFL +L + + I+ +E I + +++ F + Sbjct: 68 SFVITYSYMLDFISVIYIILSTFLGCLVVLIT-RVIEYRLKEKYILLFFVLLLLVNCFST 126 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 L++L FY+FFEA LIP+F +IG+WG +I+AA +FFLYT FGS FML IV++ Sbjct: 127 LEILNFYLFFEALLIPVFALIGIWGSQIAKIFAANQFFLYTLFGSFFMLTGIVMIIILTG 186 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 T++I+ + F I+ +++ FF +IKIPM PFH WLP AHV+APT GSV LAGI Sbjct: 187 TTNILVIKGY-LFEDHIEKILFLLFFIGLSIKIPMIPFHLWLPKAHVEAPTTGSVLLAGI 245 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+G YG IRF L LFP AS YF P+I +++I+II AS + Q D+K++IAYSSIAH Sbjct: 246 LLKLGSYGFIRFSLFLFPNASFYFLPLILSVAVISIILASFTVLRQNDLKRIIAYSSIAH 305 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M ++ IF + G++ ++HGL SSALF +G++YDR +R+IF Y GLV MP Sbjct: 306 MNFLVGAIFVKDLLALTGSLLLQIAHGLSSSALFLAIGMLYDRYKSRNIFYYRGLVTVMP 365 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + +F++AN+G P T FI E L+ +FQ ++A+L G+ LSA YS L + Sbjct: 366 IFCFFFFIFSLANLGFPSTVNFISEMLIFFGLFQTVPSIAILTLTGIFLSAAYSFVLLTR 425 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + FG + DL+ RE ++ P+A L +F G++P Sbjct: 426 IAFG-PASPFLSVYYDLTRREFYILLPLAFLIIFLGLFP 463 >gi|307154143|ref|YP_003889527.1| proton-translocating NADH-quinone oxidoreductase subunit M [Cyanothece sp. PCC 7822] gi|306984371|gb|ADN16252.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7822] Length = 537 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 170/491 (34%), Positives = 277/491 (56%), Gaps = 29/491 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGR------RSFFGVALGISTINFIFSLFV-WSV 54 N P+L+I+ P + +I G R+ AL + I+F+ ++ +S Sbjct: 5 NFPWLTIIIIFPVVASLLIFLFPSEGSEAVQEKTARTVRWYALIVGLIDFVLIVYAFYSG 64 Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 +D + Q++E Y WI + +G DG+S+ L++LT F+T +L++W + R Sbjct: 65 YDFSNPNLQLVESYSWIPQLDLKWSVGADGLSMPLILLTGFITTLAMLAAWP-VTLKPRL 123 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 + L + I F D+LLF++ +E LIP+++++ +WGG R+YA+ KF +YT Sbjct: 124 FYFLMLAMYGGQIAVFAVQDILLFFLVWELELIPVYLLLAIWGGKRRLYASTKFIIYTAG 183 Query: 174 GSIFMLFAIVVMC-WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 GS+F+L A + M + + + A ++ ++Q W++ AFF ++A+K+P+FP HTWL Sbjct: 184 GSLFILVAGLTMAFYGGDVTFDMRAIAAKEYALNLQLWLYAAFFIAYAVKLPIFPLHTWL 243 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH +A + LAGI+LKMGGY +R + P A FAPV+ L ++ I+YA+L Sbjct: 244 PDAHGEATAPVHMLLAGILLKMGGYALVRMNAGMLPDAHAVFAPVLIILGVVNIVYAALT 303 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 S Q ++K+ IAYSSI+HMG+V IG+ S G+ GA+ QM+SHGL+ ++LFF VG YD Sbjct: 304 SFAQRNLKRKIAYSSISHMGFVLIGLASFTDIGLSGAVLQMISHGLIGASLFFMVGATYD 363 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT---- 408 R HT + GG+ M + + +MA++ LPG SGF+ E +V + F S+ Sbjct: 364 RTHTLMLDEMGGVGKKMKKMFAMWTTCSMASLALPGMSGFVAELMVFIG-FATSDAYNST 422 Query: 409 ----VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPI 458 + LA+ GV+++ +Y L + R++++G E V Q L D RE C++ PI Sbjct: 423 FRVIMIFLAAIGVIITPIYLLSMLREMLYGPENKELVSHQALIDAEPREVFIIACLLVPI 482 Query: 459 AVLTVFFGIYP 469 + G YP Sbjct: 483 ----IGIGFYP 489 >gi|291571137|dbj|BAI93409.1| NADH dehydrogenase subunit 4 [Arthrospira platensis NIES-39] Length = 534 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 167/505 (33%), Positives = 282/505 (55%), Gaps = 28/505 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P+L+I P + + F ++ + +G+ + I F + +D Sbjct: 5 NFPWLTITILFPIVASLFLPFIPDKDGKTVRWYALIVGLIDFSIIVYAFC-TGYDLNTPG 63 Query: 62 FQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y W+ + S+ +G DG+S+ L++LT F+T IL++W + + FL+ Sbjct: 64 LQLVERYDWLPEIGLSWSVGADGLSMPLIILTGFITTLAILAAWPV---TLKPKLFYFLM 120 Query: 121 LE--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L I F DMLLF++ +E L+P+++I+ +WGG +R+YAA KF LYT GS+F+ Sbjct: 121 LAMYGGQIAVFAVQDMLLFFLVWELELVPVYLILSIWGGKKRLYAATKFILYTAGGSLFI 180 Query: 179 LFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L A + M + T + + A+ FP ++ ++ F ++ +K+P+FP HTWLP+AH Sbjct: 181 LVAALTMAFYGDTVTFDMQAIAIKDFPIKLELLLYGGFLIAYGVKLPIFPLHTWLPDAHG 240 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +R + + P A FAP++ L ++ I+YA+ S Q Sbjct: 241 EATAPAHMLLAGILLKMGGYALLRMNVGMLPDAHATFAPILVILGVVNIVYAAFTSFAQR 300 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IG+ S + G+ GAM QM+SHGL+ ++LFF VG YDR HT Sbjct: 301 NLKRKIAYSSISHMGFVLIGMGSFTEIGLSGAMLQMISHGLIGASLFFLVGCTYDRTHTL 360 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV------ 411 + GG+ M + + +MA++ LPG SGF+ E +V + + + A Sbjct: 361 MLDEMGGVGLKMKKVFAMWTTCSMASLALPGMSGFVAELMVFIGIATSDAYNATFKVLVV 420 Query: 412 -LASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPIAVLTVF 464 LA+ GV+++ +Y L + R++++G E ++L D RE C++ PI + Sbjct: 421 FLAAVGVIITPIYLLSMLREILYGPENQELTSHEKLVDAEPREVFVIACLLVPI----IG 476 Query: 465 FGIYP---VPIRDTFSVPLSSIIEN 486 G+YP + D+ + L++++ Sbjct: 477 IGLYPKVVTQMYDSTTTQLTALMRQ 501 >gi|218249095|ref|YP_002374466.1| NAD(P)H-quinone oxidoreductase subunit 4 [Cyanothece sp. PCC 8801] gi|257062181|ref|YP_003140069.1| NAD(P)H-quinone oxidoreductase subunit 4 [Cyanothece sp. PCC 8802] gi|218169573|gb|ACK68310.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 8801] gi|256592347|gb|ACV03234.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 8802] Length = 526 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 176/509 (34%), Positives = 288/509 (56%), Gaps = 36/509 (7%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 N P+L+ + P + +F+ + G R + +L I I+F ++ + +D Sbjct: 5 NFPWLTTIILFPIVAALFIPIIPDKDGKTVRWY---SLTIGLIDFAVIVYAFCTGYDFNN 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q+ E Y W+ ++ +G DG+S+ L++LT F+T I+++W F+ + F Sbjct: 62 PKLQLFESYAWVPQLDLNWSVGADGLSMPLILLTGFITTLAIMAAWPV---TFKPKLFYF 118 Query: 119 LVL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L I F DMLLF++ +E L+P+++I+ +WGG R+YAA KF LYT GS+ Sbjct: 119 LMLLMYGGQIAVFAVQDMLLFFLVWELELVPVYLILSIWGGKRRLYAATKFILYTAGGSL 178 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L A + M + ++ D+ A++ FP +Q +++ F ++ +K+P+FP HTWLP+ Sbjct: 179 FILVAALTMAFYGDNTTF-DMVAIAGKDFPLKLQLFLYGGFLIAYGVKLPIFPLHTWLPD 237 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH +A + LAGI+LKMGGY +R + + P A FAP++ L ++ I+YA+L S Sbjct: 238 AHGEATAPAHMLLAGILLKMGGYALLRMNVGMLPDAHGVFAPILVILGVVNIVYAALTSF 297 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q ++K+ IAYSSI+HMG+V IG+ S G GAM QM+SHGL+ ++LFF VG YDR Sbjct: 298 AQRNLKRKIAYSSISHMGFVLIGMASFTSLGTSGAMLQMISHGLIGASLFFMVGCTYDRT 357 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT------ 408 HT + GG+ M + + +MA++ LPG SGF+ E +V + F S+ Sbjct: 358 HTLMLDEMGGVGKKMKKVFAMWTTCSMASLALPGMSGFVAELMVFVG-FATSDAYNSTFK 416 Query: 409 -VAV-LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRE----RCMVYPIAV 460 +A+ LA+ GV+L+ +Y L + R++++G E V K D RE C++ PI Sbjct: 417 VIAIFLAAVGVILTPIYLLSMLREMLYGPENEELVSHTKLIDAEPREVFIIGCLLIPI-- 474 Query: 461 LTVFFGIYP---VPIRDTFSVPLSSIIEN 486 + G+YP I DT + L++++ Sbjct: 475 --IGIGLYPKIVTQIYDTTTNQLTALMRG 501 >gi|320009192|gb|ADW04042.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces flavogriseus ATCC 33331] Length = 523 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 179/517 (34%), Positives = 287/517 (55%), Gaps = 31/517 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M+ P L++ LP +G RR+ +AL +S + + V++ F+ G Sbjct: 1 MSFPLLTVTAALPAIGAIATAAVPAA---RRTAAKWLALAVSLATLVLAGIVFARFEPGG 57 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKS---IQENFREYM 115 +Q+ E + WI D+ Y LGVDGI + L+ LT L PF IL+ W ++ N + Sbjct: 58 DRYQLTESHAWIKDFGVRYELGVDGIGVALLALTALLIPFVILAGWHDADVLETNSSRWR 117 Query: 116 IA------FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GS 158 L++E+MVI +F++ D+ LFYI FEA LIPM+ +IG +G + Sbjct: 118 PTQGFFALILMVEAMVILSFVATDVFLFYILFEAMLIPMYFLIGGFGDRAHSGSDENAAA 177 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPF--SIQYWMWI 213 +R YAA KF LY G + ML A++ V+ S I + A S + W+++ Sbjct: 178 QRSYAAVKFLLYNLAGGLIMLAAVIGLYVVAGSFSLSEIAEARANGSLDMATSTERWLFL 237 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K P++P HTWLPNA +A T +V + ++ K+G + +RF L LFP AS++ Sbjct: 238 GFFFAFAVKAPLWPLHTWLPNAMGEATTPVAVLITAVVDKVGTFAMLRFCLQLFPEASKW 297 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 PVI L+LI+I+Y +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G GA M Sbjct: 298 ATPVILVLALISIVYGALLAVGQRDIKRLIAYASISHFGFIVLGIFAMTSQGQSGATLYM 357 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL ++AL G + R +R I YGG+ P A +V +A + LPG + F+ Sbjct: 358 VNHGLSTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLVGGLATLSLPGLAPFV 417 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFLV++ F V ++A+ G+VL+ALY L LY++ + G + E + + DL +RE Sbjct: 418 SEFLVLVGAFSAYPVVGIIATVGIVLAALYVLVLYQRTMTGPVR-EGIGGMPDLKVRELA 476 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 + P+ L +F G++P P+ + + + + + K Sbjct: 477 VALPLIALLIFLGVFPQPLTEVVNPAVQHTMHDVQKK 513 >gi|318040618|ref|ZP_07972574.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. CB0101] Length = 543 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 176/502 (35%), Positives = 275/502 (54%), Gaps = 28/502 (5%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRSSF 62 P+LS P I F G G++ + ALGI+ I F+ ++ + + +D Sbjct: 22 PWLSASILFPIGAALCIPFVPDNGDGKQVRW-FALGIALITFLITVGAYLNGYDPSNPDL 80 Query: 63 QMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E W+ D + +G DGIS+ L++LT+F+T +L++W +F+ + FL+L Sbjct: 81 QLVEKVSWLPDLGLEWSVGADGISMPLILLTSFITALAVLAAWPV---SFKPKLFYFLLL 137 Query: 122 --ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + I F DMLLF++ +E LIP+++++ +WGG +R YAA KF LYT S+F+L Sbjct: 138 AMDGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLFIL 197 Query: 180 FAIVVMCWEKKTSSI--IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A + M + S DL A F Q + +F +K+P+ P HTWLP+AH Sbjct: 198 LAGLAMAFYGGDISFNYTDLMA-KGFSVKFQLLAYAGLLIAFGVKLPIVPLHTWLPDAHG 256 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +RF + P FAP++ L ++ IIYA+L S Q Sbjct: 257 EATAPVHMLLAGILLKMGGYALLRFNCQILPDGHAVFAPLLVVLGVVNIIYAALTSFAQR 316 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR HT Sbjct: 317 NLKRKIAYSSISHMGFVLIGIGSFSALGSSGAMLQMISHGLIGASLFFLVGATYDRTHTL 376 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ M + + V ++A++ LPG SGF+ E +V + + + Sbjct: 377 QLDEMGGVGQKMRKMFALWTVCSLASLALPGMSGFVSELMVFVGFATDDAYTLPFRVVID 436 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPIAVLTVF 464 LA+ GV+L+ +Y L + R++ +G K E V L D RE C++ PI + Sbjct: 437 GLAAIGVILTPIYLLSMLREIFYGQEKAELVGHTNLVDAEPREIYIIGCLLVPI----IG 492 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G+YP + D++ + ++ Sbjct: 493 IGLYPRLMTDSYKASMEVLVAR 514 >gi|229821697|ref|YP_002883223.1| proton-translocating NADH-quinone oxidoreductase, chain M [Beutenbergia cavernae DSM 12333] gi|229567610|gb|ACQ81461.1| proton-translocating NADH-quinone oxidoreductase, chain M [Beutenbergia cavernae DSM 12333] Length = 507 Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 160/442 (36%), Positives = 256/442 (57%), Gaps = 21/442 (4%) Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF---------- 111 Q E + WI SY +G+ G+ +L+V+L TFL P + + W +++ Sbjct: 62 QFTETHSWIPAIGASYAVGLTGLGLLMVLLATFLVPLVLAAGWNDARDDAVGAPGSRAAL 121 Query: 112 --REYMIAF-LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFF 168 + M+A L LE+M+I F + D+ LFY+ FEA L+P++ +IG++GG R AA KF Sbjct: 122 RRQAGMVALVLALEAMMIAVFAAQDVFLFYVLFEAMLLPVYFLIGLYGGPARRAAAVKFL 181 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSS----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 LY+ G + ML ++ + ++ I +L + P +Q W++ AFF +FA+K P Sbjct: 182 LYSLAGGLIMLAGVIAVYFQGPGGPDGFLIANLSGVVADPV-LQRWLFAAFFIAFAVKAP 240 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 M+P HTWLP+A QAP S L G++ K+G +G I LPLFP AS + AP I L+L+ Sbjct: 241 MWPVHTWLPDAAAQAPAGTSTLLVGVLDKVGTFGMIALCLPLFPEASAWAAPAIIVLALV 300 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +IIY LV++ Q D+ + +A++S++H G++ +GI+ G + GAM ML+HG+ ++ LF Sbjct: 301 SIIYGGLVAIGQQDLMRFVAFTSVSHFGFIVLGIYVGSSVALTGAMLYMLAHGISTAGLF 360 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G + DR +R I YGGL P A + +V +A++ LPG SGF+ E+LV++ F Sbjct: 361 LVSGFLTDRGKSRRIDDYGGLQKVTPVIAGIFLVSGLASIALPGLSGFVPEYLVLLGSFD 420 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTV 463 S V+A+ GV+++A+Y L Y+++ G + + L DL RER ++ PI + Sbjct: 421 ASAVAGVVATAGVIIAAIYVLLTYQRIFTGPPPGDGPLASLPDLGGRERWVMVPIVAAML 480 Query: 464 FFGIYPVPIRDTFSVPLSSIIE 485 G YP P D + P+S ++ Sbjct: 481 VLGFYPAPALDVLT-PISDVLA 501 >gi|186686215|ref|YP_001869411.1| NAD(P)H-quinone oxidoreductase subunit 4 [Nostoc punctiforme PCC 73102] gi|186468667|gb|ACC84468.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nostoc punctiforme PCC 73102] Length = 525 Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 181/523 (34%), Positives = 287/523 (54%), Gaps = 38/523 (7%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N P+L+ + LP +I + G R + +L + I+F ++ ++ +D Sbjct: 5 NFPWLTTIILLPIAASLLIPIIPDKEGKTVRWY---SLIVGLIDFALIVYAFYTRYDFSN 61 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q++E Y W+ ++ +G DG+S+ L++LT F+T IL++W F+ + F Sbjct: 62 PDLQLVESYPWVPQLDLNWSVGADGLSMPLIILTGFITTLAILAAWPV---TFKPKLFYF 118 Query: 119 LVLE--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L I F DMLLF++ +E L+P++ ++ +WGG R YAA KF LYT GS+ Sbjct: 119 LILAMYGGQIAVFAVQDMLLFFLVWELELVPIYFLLSIWGGKRRQYAATKFILYTAGGSL 178 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L + + M + T + D+ ++ F + Q ++ F ++A+K+P+ P HTWLP+ Sbjct: 179 FILLSALTMGFYGDTVTF-DMRSLGLKDFALNFQLAVYAGFLIAYAVKLPIIPLHTWLPD 237 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH +A + LAGI+LKMGGY IR + P A FAPV+ L ++ IIYA+L S Sbjct: 238 AHGEATAPVHMLLAGILLKMGGYALIRMNAQMLPDAHALFAPVLVVLGVVNIIYAALTSF 297 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q ++K+ IAYSSI+HMG+V IGI S G+ GA+ QM+SHGL+ ++LFF VG YDR Sbjct: 298 AQRNLKRKIAYSSISHMGFVMIGIASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRT 357 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT------ 408 HT + GG+ MP+ + +MA++ LPG SGF+ E +V + F S+ Sbjct: 358 HTLMLDEMGGVAKRMPKIFAMFTTCSMASLALPGMSGFVAELMVFVG-FATSDAYSSTFK 416 Query: 409 --VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPIAV 460 V L + GV+L+ +Y L + R++ +G E V Q L D RE C++ PI Sbjct: 417 VIVVFLMAVGVILTPIYLLSMLREIFYGKENEELVSHQALIDAEPREVFIIACLLIPI-- 474 Query: 461 LTVFFGIYP---VPIRDTFSVPLSSIIENY--TLKTGYSDSVK 498 + G YP + D +V L++ + + TL D++K Sbjct: 475 --IGIGFYPKLLTQMYDATTVQLTARLRDSVPTLAQQKDDALK 515 >gi|109156493|ref|YP_654347.1| NADH dehydrogenase subunit 4 [Colpophyllia natans] gi|108744098|gb|ABG02321.1| NADH dehydrogenase subunit 4 [Colpophyllia natans] Length = 479 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 190/435 (43%), Positives = 269/435 (61%), Gaps = 4/435 (0%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTTF 94 AL S F +L +W FD G FQ IE W + L +DG+S+ ++LTTF Sbjct: 30 ALEWSLAIFFSALVLWGGFD-GEGHFQFIETVEWGGFLAWGPLLFALDGVSLFFLLLTTF 88 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CIL S +S + F+E+++ LE +++G FL D+ LFYIFFE LIPMF +IG+ Sbjct: 89 LIPICILISQRSTKFLFKEFLLCLFFLEVLLVGVFLVFDLFLFYIFFEGVLIPMFFLIGI 148 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 WG E A +F + F F +++ ++ ++ L +K S+Q W I Sbjct: 149 WGSREEKVRASFYFFFFTFAGSVFFFFVILFLYQTTGTTNYFLLLNTKLSLSVQKWALIG 208 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 F SFA+K+P+ PFH WLP AHV+AP AGSV LAGI+LK+GGYG +RF PLFP AS Y+ Sbjct: 209 VFLSFAVKLPLIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGLLRFSWPLFPEASFYW 268 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 +PVI F S+IA++Y L++ Q D K+L+AYSS+AHMG V +GIF+ + G+ GA+F ML Sbjct: 269 SPVIVFFSVIAVVYGGLMTCRQIDFKRLVAYSSVAHMGLVPLGIFTHIMEGLVGAVFLML 328 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HG VSSALF V +YDR HTR I Y GL MP +AV M+V +++NMGLP + F+G Sbjct: 329 AHGFVSSALFIGVTFLYDRHHTRLIKYYRGLTLTMPFFAVSMLVLSLSNMGLPLSCNFVG 388 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EF +++ F+ V VL FGV+ SA+YSL L+ ++ FG + +DL+ +E Sbjct: 389 EFFSLLAAFKYYYGVGVLVVFGVLFSAIYSLSLFNRISFG-GGSNYLLFNRDLNRQEGFT 447 Query: 455 VYPIAVLTVFFGIYP 469 + P ++ G+ P Sbjct: 448 ILPFLIIIFLGGVVP 462 >gi|219847702|ref|YP_002462135.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroflexus aggregans DSM 9485] gi|219541961|gb|ACL23699.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroflexus aggregans DSM 9485] Length = 533 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 163/430 (37%), Positives = 258/430 (60%), Gaps = 23/430 (5%) Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q ++ W+ SY +GVDGI++ LV LT FLTPF I ++W+ + R + L Sbjct: 73 LQFVDTVVWLTAIGASYFIGVDGINLWLVGLTAFLTPFAIAATWQRQTRSLRLLLALLLF 132 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 E+ +G FL+ DMLLFY+F+E +LIPM +IG+WG R+ A K FLYTF GS+ MLF Sbjct: 133 AETAFLGVFLAQDMLLFYVFYELALIPMIFLIGMWGHHGRVTATLKLFLYTFGGSLLMLF 192 Query: 181 AIV-VMCWEKKTSSIID-----LYAMSKF------------PFSIQYWMWIAFFCSFAIK 222 AI+ + + + I+ +A+++ P Q ++ AFF +FAIK Sbjct: 193 AIIGLHILHRNAIATINPGFTGTFALNQIVADLRSGLFSLDPLMAQL-LFGAFFLAFAIK 251 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 + ++P H+WLP+A+ APT ++ LAG+M K G YG IRF L LFP + + AP I L+ Sbjct: 252 LALWPLHSWLPDAYSVAPTPAAIILAGLMAKFGAYGFIRFNLTLFPEVASWAAPAIAVLA 311 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 +I IIY +L++ Q D++++IAY+S++HM ++ +GI + G+ GA+ QM++HG++ +A Sbjct: 312 VIGIIYGALIAFTQRDMQRMIAYASMSHMNFIALGIVTLTAIGINGALLQMVAHGVIMAA 371 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 L + VI +R +R++ ++GGL P YA + ++ +A GLPG SGF+GEF ++ V Sbjct: 372 LLLIITVIEERRDSRELTSFGGLWRVTPVYAGLTLLTLLAMAGLPGLSGFVGEFTMLQGV 431 Query: 403 FQNSN---TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIA 459 F + A+ A G++L+A+Y+L L+R G + L DL RE + +A Sbjct: 432 FTSPLLGWPFALGAVIGIILAAVYALNLFRMGFMGEVRNTANLDLPDLQRRELMTLGALA 491 Query: 460 VLTVFFGIYP 469 V+ V G++P Sbjct: 492 VVIVALGLFP 501 >gi|87123603|ref|ZP_01079454.1| putative NADH dehydrogenase (complex I) subunit (chain 4) [Synechococcus sp. RS9917] gi|86169323|gb|EAQ70579.1| putative NADH dehydrogenase (complex I) subunit (chain 4) [Synechococcus sp. RS9917] Length = 554 Score = 286 bits (731), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 172/504 (34%), Positives = 277/504 (54%), Gaps = 27/504 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 +P+LS+ P +G ++ F G G++ + ALGI+ + F+ + + + +D S Sbjct: 24 GVPWLSLSILFPIVGALIVPFVPDKGDGKQVRW-FALGIALVTFLITAAAYLNGYDPSVS 82 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E W+ ++ +G DG+S+ L++LT+F+T +L++W F+ + FL Sbjct: 83 GLQLSERVSWLPQLGLTWAVGADGLSMPLILLTSFITTLAVLAAWPV---TFKPKLFFFL 139 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L + I F DMLLF++ +E LIP+++++ +WGG +R YAA KF LYT S+F Sbjct: 140 ILAMDGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLF 199 Query: 178 MLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L A + M + S + A F Q + +F +K+P+ P HTWLP+A Sbjct: 200 ILLAALAMGFFGGGTPSYEYSVLAQKGFGTGFQLLCYAGLLIAFGVKLPIVPLHTWLPDA 259 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY +RF L P A FAP++ L ++ IIYA+L S Sbjct: 260 HGEATAPVHMLLAGILLKMGGYALMRFNAELLPAAHAQFAPLLVVLGVVNIIYAALTSFA 319 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR H Sbjct: 320 QRNLKRKIAYSSISHMGFVLIGIGSFSALGTSGAMLQMISHGLIGASLFFLVGATYDRTH 379 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG+ M + + ++A++ LPG SGF+ E +V + Sbjct: 380 TLQLDEMGGVGQKMRIMFALWTICSLASLALPGMSGFVSELMVFAGFATDEAYSLTFRIV 439 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPIAVLT 462 + LA+ GV+L+ +Y L + R++ FG + V L D RE C++ PI Sbjct: 440 IDGLAAVGVILTPIYLLSMLREIFFGKENSQLVTNTNLVDAEPREIYIIGCLLVPI---- 495 Query: 463 VFFGIYPVPIRDTFSVPLSSIIEN 486 + G+YP + D++ + ++++ Sbjct: 496 IGIGLYPRLMTDSYRSSIEALVDR 519 >gi|170784793|ref|YP_001718709.1| NADH-plastoquinone oxidoreductase subunit 4 [Trachelium caeruleum] gi|156598810|gb|ABU85658.1| NADH-plastoquinone oxidoreductase subunit 4 [Trachelium caeruleum] gi|157267541|gb|ABV26534.1| NADH-plastoquinone oxidoreductase subunit 4 [Trachelium caeruleum] Length = 513 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 166/477 (34%), Positives = 273/477 (57%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L++ FLP VI F + G ++ + + I + I LF + F+ Q Sbjct: 14 PWLTVSIFLPLSVGSVIFFLPHRGNRVIRWYSICICILELLVITYLFCYH-FESNDPLIQ 72 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 73 LVEDYKWINFFEFHWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFYFLMLSMY 131 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 132 SAQIGSFSSQDLLLFFIMWELELIPIYLLLSIWGGKKRMYSATKFILYTAGGSVFLLMGV 191 Query: 183 VVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + S +D + +P S++ +I FF +FA+K P+ P HTWLPN H +A Sbjct: 192 LGLGLYGSNESTLDFERLINQTYPMSLEILFYIGFFIAFAVKSPILPLHTWLPNTHGEAH 251 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S Q ++K Sbjct: 252 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSLFSPWLLIIGTLQIIYAASTSSAQPNLK 311 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ +GI S +G+ GA+ Q++SHG + +ALFF VG YDR+H + Sbjct: 312 KRIAYSSVSHMGFILVGIGSITNAGLNGALLQIISHGFIGAALFFLVGTSYDRIHLVYLN 371 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V+ + + + + Sbjct: 372 EMGGVAILMPKIFTMFSTFSMASLALPGMSGFVAELIVLWGIITSQKYLVMPKILITFVI 431 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 432 AIGIILTPIYSLSMARQIFYGYKLLNAPNSYVLDFGPRELFVSISIFLPVIGIGLYP 488 >gi|218438519|ref|YP_002376848.1| NAD(P)H-quinone oxidoreductase subunit 4 [Cyanothece sp. PCC 7424] gi|218171247|gb|ACK69980.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7424] Length = 537 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 171/501 (34%), Positives = 287/501 (57%), Gaps = 33/501 (6%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSS------YLGCGRRSFFGVALGISTINFIFSLFV-WS 53 N P+L+ + P + +I LF S + RR + AL I I+F+ ++ ++ Sbjct: 5 NFPWLTTIILFPVVASLLIFLFPSEGSEAVQVKTARRVRW-YALIIGLIDFVLIVYAFYT 63 Query: 54 VFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 +D Q++E Y+W+ + + +G DG+S+ L++LT F+T +L++W + R Sbjct: 64 GYDFSNPDLQLVESYNWLPELDLKWSVGADGLSMPLILLTGFITTLAMLAAWP-VTLKPR 122 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF 172 + L + I F D+LLF++ +E LIP+++++ +WGG R+YA+ KF +YT Sbjct: 123 LFYFLMLAMYGGQIAVFAVQDILLFFLVWELELIPVYLLLAIWGGKRRLYASTKFIIYTA 182 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 GS+F+L A + M + + D+ A++ ++ ++Q W++ AFF ++A+K+P+FP HT Sbjct: 183 GGSLFILVAGLTMAFYGGDLTF-DMRAIAAKEYALNLQLWLYAAFFIAYAVKLPIFPLHT 241 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH +A + LAGI+LKMGGY +R + P A FAP++ L ++ I+YA+ Sbjct: 242 WLPDAHGEATAPVHMLLAGILLKMGGYALVRMNAGMLPDAHAVFAPILVILGVVNIVYAA 301 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 L S Q ++K+ IAYSSI+HMG+V IG+ S G+ GA+ QM+SHGL+ ++LFF VG Sbjct: 302 LTSFAQRNLKRKIAYSSISHMGFVLIGLASFTDIGLSGAVLQMISHGLIGASLFFMVGAT 361 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-- 408 YDR HT + GG+ M + + +MA++ LPG SGF+ E +V + F S+ Sbjct: 362 YDRTHTLMLDEMGGVGQKMKKMFAMWTTCSMASLALPGMSGFVAELMVFIG-FATSDAYN 420 Query: 409 ------VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVY 456 + LA+ GV+++ +Y L + R++++G E V Q L D RE C++ Sbjct: 421 TTFRVIMVFLAAIGVIITPIYLLSMLREMLYGPENKELVSHQALIDAEPREVFIIACLLV 480 Query: 457 PIAVLTVFFGIYPVPIRDTFS 477 PI + G YP + + + Sbjct: 481 PI----IGIGFYPKIVTEIYD 497 >gi|282898761|ref|ZP_06306748.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Cylindrospermopsis raciborskii CS-505] gi|281196288|gb|EFA71198.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Cylindrospermopsis raciborskii CS-505] Length = 522 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 175/506 (34%), Positives = 276/506 (54%), Gaps = 30/506 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P+L+ + P +I +F + +G+ I + F ++ +D Sbjct: 3 NFPWLTTIILFPIAASLLIPIIPDKEGKTVRWFALIVGLIDFALIVAAF-YTGYDFSNPD 61 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI + +GVDG+S+ L++LT F+T L++W F+ + FL+ Sbjct: 62 LQLVESYSWIPQIDLRWSVGVDGLSMPLIILTGFITTLAALAAWPV---TFKPRLFYFLL 118 Query: 121 LE--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L I F DMLLF++ +E LIP+++++ +WGG +R YAA KF LYT S+F+ Sbjct: 119 LAMYGGQIAVFAVQDMLLFFLVWELELIPVYLLLAIWGGKKRHYAATKFILYTAGASLFI 178 Query: 179 LFAIVVMC-WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 L + M + + + A+ + ++Q ++ F ++A+K+P+ P HTWLP+AH Sbjct: 179 LLGSLTMAFYGDNITFDMSSLALKDYALNLQLLLYAGFLIAYAVKLPIIPLHTWLPDAHG 238 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY IR + P A YFAP++ L ++ IIYA+L S Q Sbjct: 239 EATAPVHMLLAGILLKMGGYALIRMNAQMLPDAHAYFAPLLVILGVVNIIYAALTSFAQR 298 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+VTIGI S G+ GA+ QM+SHGL+ ++LFF VG YDR HT Sbjct: 299 NLKRKIAYSSISHMGFVTIGIASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTL 358 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT--------V 409 + GG+ M + + +MA++ LPG SGF+ E +V + F S+ V Sbjct: 359 MLDEMGGVGKRMKKIFAMFTTCSMASLALPGMSGFVAELMVFVG-FATSDAYNPTFKVIV 417 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPIAVLTV 463 +L + GV+L+ +Y L + R++ +G E V Q L D RE C++ PI + Sbjct: 418 VLLMAVGVILTPIYLLSMLREIFYGQENDELVSHQALIDAEPREVFIIACLLVPI----I 473 Query: 464 FFGIYP---VPIRDTFSVPLSSIIEN 486 G YP I D +V L+ + + Sbjct: 474 GIGFYPKLLTQIYDATTVQLTQRLRD 499 >gi|54024625|ref|YP_118867.1| NADH dehydrogenase subunit M [Nocardia farcinica IFM 10152] gi|54016133|dbj|BAD57503.1| putative NADH dehydrogenase I chain M [Nocardia farcinica IFM 10152] Length = 543 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 180/505 (35%), Positives = 282/505 (55%), Gaps = 37/505 (7%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFF-GVALGISTINFIFSLFVWSVFDKGRS 60 + P+L+I+ LP G +L + RR+ G+AL +S + + F+ G + Sbjct: 8 DFPWLTILWLLPVAGALAVL---AVPAERRTLARGLALAVSVGVLGVAAGLAVAFEPGGA 64 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE--NFRE---- 113 +Q +E WI F Y LG+DGI+++LVVLT L P IL+ W +E + R Sbjct: 65 QYQFVESRQWIPAFGAGYTLGLDGIALVLVVLTAALVPLLILAGWHDDREVGSGRRVAHT 124 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE--------RIYAAY 165 Y+ L++E+MV+ +FL+LD+LLFY+FFEA LIPM+ +IG +G R AA Sbjct: 125 YVALTLLVEAMVLMSFLALDILLFYVFFEAMLIPMYFLIGGFGPRTGDLAARATRSRAAV 184 Query: 166 KFFLYTFFGSIFMLFAIVVM-------CWEKKTSSIIDLY---------AMSKFPFSIQY 209 KF LY G + ML A++ + DL A+ P ++ Sbjct: 185 KFLLYNLLGGLIMLAAVIGLYVLTARAGLGPDGGGTFDLRTVVAAANSGALGAGP-AVLN 243 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 +++ F +FA+K P++P HTWLP+A V A + +V + ++ K+G +G +RF L LFP Sbjct: 244 ALFLGFMFAFAVKAPLWPLHTWLPDAAVAATPSSAVLMMAVVDKVGTFGMLRFCLTLFPG 303 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 ASQ +AP++ L++I I+Y +L+++ QTD+ +LIAY+SI+H G++ +GIF+ GA Sbjct: 304 ASQTYAPLVITLAVIGILYGALLAIGQTDVMRLIAYTSISHFGFIILGIFAMTSQSQSGA 363 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 M++HG+ ++ALF G + R TR I YGG+ P A V +A + LPG Sbjct: 364 TLYMVNHGISTAALFLIAGFLVSRRGTRLIADYGGVQKVAPVLAGTFFVAGLATLSLPGL 423 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 + F+ EFLV++ F AV A+ +VL+A+Y LWLY++++ G K ++L DL Sbjct: 424 APFVSEFLVLVGTFSRYQVAAVFATGALVLAAIYVLWLYQRMMTGPVKAGN-EKLPDLVP 482 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRD 474 RE +V P+ VF G+YP + D Sbjct: 483 RELLVVAPLIAGLVFLGVYPKAVLD 507 >gi|126657860|ref|ZP_01729013.1| NAD(P)H-quinone oxidoreductase subunit D [Cyanothece sp. CCY0110] gi|126620800|gb|EAZ91516.1| NAD(P)H-quinone oxidoreductase subunit D [Cyanothece sp. CCY0110] Length = 564 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 171/472 (36%), Positives = 274/472 (58%), Gaps = 25/472 (5%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+ + LP + VI + ++ A+G++ +F+ +V++ +D S+F Sbjct: 7 PWLTAIILLPLMASLVIPVLPVKDGKQVRWY--AIGVAIADFVLMCYVFAQNYDTSNSNF 64 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y W+ S+ + VDGIS+ LV+L +T + S+W+ + R + L+L Sbjct: 65 QLVETYQWLPTLGLSWTVSVDGISMPLVLLAGLVTTLAMFSAWQ-LDHKPRLFYTLMLML 123 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 + IG F++ D+LL +I +E L+P++++I VWGG +R YAA KF LYT SIF+L A Sbjct: 124 YAAQIGVFVAQDVLLLFIMWELELVPVYLLISVWGGQKRQYAAMKFLLYTAAASIFILVA 183 Query: 182 IVVMCW---EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + M + T I++L + +P ++ ++ +F +K+ +FP HTWLP+AH + Sbjct: 184 ALAMALYGGDNLTFDIVEL-GLKDYPLGLELLLYAGLLIAFGVKLAVFPLHTWLPDAHGE 242 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A S+ LAG++LKMGGYG IR + L A YFAP++ L ++ I+Y +L S QT+ Sbjct: 243 ASAPVSMILAGVLLKMGGYGLIRLNMGLLSDAHIYFAPILATLGVVNIVYGALTSFGQTN 302 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ +AYSS++HMG+V +GI S G+ GAM QMLSHGL+++ LFF GV YDR HT Sbjct: 303 MKRRLAYSSVSHMGFVLLGIASFTDLGMSGAMLQMLSHGLIAALLFFLAGVTYDRTHTLA 362 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + G + MP+ + MA++ LPG SGF E V + F NS+ TV V Sbjct: 363 LNDMGDIGEKMPKVFALFTAGAMASLALPGMSGFASEIAVFLG-FSNSDIYSSNFRTVTV 421 Query: 412 -LASFGVVLSALYSLWLYRKVVFGVSK---C---EKVQQLKDLSLRERCMVY 456 L++ GV+L+ +Y L + R++ +G K C + V+Q KD + M + Sbjct: 422 FLSAVGVILTPIYLLSMLRQLFYGTGKIPVCVVGDTVRQ-KDYQDNQETMCF 472 >gi|172072936|ref|YP_001806697.1| NADH dehydrogenase subunit 4 [Cryptomeria japonica] gi|193806224|sp|B1VKI4|NU4C_CRYJA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|171854955|dbj|BAG16695.1| NADH-plastoquinone oxidoreductase subunit 4 [Cryptomeria japonica] gi|239794323|dbj|BAH73320.1| NADH-plastoquinone oxidoreductase subunit 4 [Cryptomeria japonica] gi|239794406|dbj|BAH73402.1| NADH-plastoquinone oxidoreductase subunit 4 [Cryptomeria japonica] Length = 499 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 179/488 (36%), Positives = 279/488 (57%), Gaps = 31/488 (6%) Query: 2 NLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV---FDK 57 NLP+L+I+ LP G+ + LF G + LGI ++ + +++ FD Sbjct: 3 NLPWLTIIVILPISAGLLIPLFPH---KGNKMIRWYTLGICLLDLLLMTYIFRYHYHFDN 59 Query: 58 GRSSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 S Q+ E Y+WI+ + LG+DG SI L++LT F+T L++W + N R Sbjct: 60 --SLIQLEEDYNWINLIHFHWKLGIDGFSIGLILLTGFVTTLATLAAWP-VTRNPRLLHF 116 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L + S +G F S D+LLF++ +E LIP+++++ +WGG R+Y+A KF LYT GSI Sbjct: 117 LMLAMYSGQLGLFASRDILLFFLMWELELIPVYLLLSMWGGKRRLYSATKFLLYTAGGSI 176 Query: 177 FMLFAIVVMCWEKKTSSIID--LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L + M D L A +P +++ +++ F ++AIK+P+FP HTWLP+ Sbjct: 177 FILMGALSMGLYGSHGPTFDFELLAKKDYPITLEILLYLGFLIAYAIKLPIFPLHTWLPD 236 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 H +A + + LAG++LKMGGYG IR + L P A F+P + + + IIYA+L SM Sbjct: 237 THGEAHYSTCMLLAGVLLKMGGYGLIRINMELLPHAHSLFSPWLIIIGAVQIIYAALTSM 296 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q ++K+ IAYSSI+HMG+V IGI S +G+ GA+ QM+SHGL+ +ALFF VG YDR+ Sbjct: 297 GQRNLKRRIAYSSISHMGFVIIGIGSMTYTGLNGAILQMISHGLIGAALFFLVGTSYDRI 356 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN------- 407 T + GG+ +P+ + F+MA++ LPG SGF+ EF++ + V N Sbjct: 357 RTLFLDEMGGIAIPIPKIFTMFSSFSMASLALPGMSGFVAEFMIFLGVITNHKYSSTFRI 416 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRER----CMVYPIAVL 461 + +A+ G++L+ +Y L + R++ +G K V KD RE C+ PI Sbjct: 417 IITAIAAIGMILTPIYLLSMLRRMFYGY-KVLNVPNPYFKDSGPRELFILICLFLPI--- 472 Query: 462 TVFFGIYP 469 + G+YP Sbjct: 473 -IGIGLYP 479 >gi|187438960|gb|ACD10932.1| NADH dehydrogenase subunit 4 [Blastocystis sp. NandII] Length = 282 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 136/278 (48%), Positives = 196/278 (70%) Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q +WIAFF SFA+K+PM PF+ WLP AHV+APT GSV LAGI+LK+G YG +RF LPLF Sbjct: 1 QKILWIAFFVSFAVKVPMIPFYIWLPEAHVEAPTPGSVILAGILLKLGTYGFLRFSLPLF 60 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 A+ Y+ P I+ LS++ +IY+SLV++ QTD+K+++AY+SIAHM + IG+++ G+E Sbjct: 61 TFANFYYTPFIYTLSILGLIYSSLVAIRQTDLKRIVAYASIAHMNLIMIGLYTNKIYGIE 120 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 G++ QM SHGLVS ALF VGV+Y+R HTR I Y GLV MP +AV+ ++FT+AN+ LP Sbjct: 121 GSLLQMFSHGLVSGALFLIVGVLYERYHTRLIKYYSGLVQTMPLFAVIFLLFTLANIALP 180 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDL 447 TS F+GEFL+ + +F ++T+AV A ++ ++YSLWLY +V +G + + +DL Sbjct: 181 TTSSFVGEFLIFLGIFNTNSTIAVFAILSMMFGSIYSLWLYNRVCYGNIQINFISLYQDL 240 Query: 448 SLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + RE M I VL GIYP + D ++ +S ++ Sbjct: 241 NKREFVMFCLILVLVFLIGIYPTFLLDYLNMSVSFLLN 278 >gi|256422824|ref|YP_003123477.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chitinophaga pinensis DSM 2588] gi|256037732|gb|ACU61276.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chitinophaga pinensis DSM 2588] Length = 490 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 172/405 (42%), Positives = 251/405 (61%), Gaps = 7/405 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 S H+ +DG ++L++LT FL +L SW I+E Y L + + G F+++D+ Sbjct: 74 SLHVALDGFGMVLLLLTFFLGILAVLCSWNEIREKTGFYYFNLLWTLAGISGVFVAMDLF 133 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW---EKKTS 192 LFY +E LIPM+++I +WG S R YAAYKFFL+T GS+ ML +I+ + + ++ Sbjct: 134 LFYFCWEVMLIPMYLLIILWGDSRRRYAAYKFFLFTQAGSLLMLLSILALYFIHGQQTGQ 193 Query: 193 SIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 D + + + F +W+ F +F IK+P+ PFH WLP+AH +APTAGS+ LAG+ Sbjct: 194 YTFDYFELLRTTFKGDTAWWIMAGFMIAFTIKLPIVPFHNWLPDAHSEAPTAGSLLLAGL 253 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK G YG IRF+LPLFP AS A +I IIY + ++ QTDIK+LIAY+S++H Sbjct: 254 LLKTGAYGIIRFVLPLFPEASVAIAWWAMLFGVIGIIYGAFLAFSQTDIKRLIAYTSVSH 313 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG+V GIFS + ++G + QML+HGL + ALF G++ +RLHTRDI GGL +MP Sbjct: 314 MGFVLTGIFSFSEIAMQGVVMQMLTHGLSTGALFVMAGMLKERLHTRDITKMGGLWTSMP 373 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 ++FTMA+ GLP FI EF +++ F + +VLAS G+VLSALY L L ++ Sbjct: 374 AMGGAAILFTMASSGLPLLGNFIAEFFILLGTFTVNVLFSVLASVGLVLSALYGLRLLQR 433 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 V G ++DLS RE ++ ++V V G+YP P+ DT Sbjct: 434 VFMGAIVVSN--PVRDLSTREMLIMAALSVSIVALGLYPQPVIDT 476 >gi|86605237|ref|YP_474000.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. JA-3-3Ab] gi|123507579|sp|Q2JWW3|NU4C1_SYNJA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 1; AltName: Full=NAD(P)H dehydrogenase I, chain 4 1; AltName: Full=NDH-1, chain 4 1 gi|86553779|gb|ABC98737.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family [Synechococcus sp. JA-3-3Ab] Length = 526 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 163/458 (35%), Positives = 268/458 (58%), Gaps = 15/458 (3%) Query: 33 FFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFC-SYHLGVDGISILLVVL 91 ++ +A+G + + +F W +D S Q+ E Y W+ + L VDG+S LV+L Sbjct: 35 WYALAVGALDLGLMAYIFGWH-YDLRDFSLQLAERYAWVPQIGFHWSLAVDGLSFPLVLL 93 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 + +T I+++W ++ R + L++ +G FL+ D+LLF++ +E L+P++++ Sbjct: 94 SGLITTLAIVAAW-NLTHKPRLFFFLLLLMYGAQVGVFLAQDLLLFFLMWEIELVPVYLL 152 Query: 152 IGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQY 209 I +WGG +R YAA KF LYT SIF+L + M + E + + +L A S +P ++Q Sbjct: 153 IAIWGGPQRQYAATKFILYTAAASIFILVGSLAMAFGSEGFSLEMAELGAKS-YPLALQI 211 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 + AF +F +K+P+FP HTWLP+AH +A S+ LAG++LKMGGYG IR + + Sbjct: 212 LAYAAFLIAFGVKLPVFPLHTWLPDAHSEASAPISMILAGVLLKMGGYGLIRLNVGILSE 271 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 A YFAPV+ L + I+Y +L ++ Q +K+ +AYSSIAHMG+V IGI + + G+ GA Sbjct: 272 AHVYFAPVLAVLGAVNIVYGALAALGQNYLKRRLAYSSIAHMGFVLIGIAAFTELGLNGA 331 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 + QM+SHGL+++ LFF G+ Y+R HT + GGL MP+ + ++A++ LPG Sbjct: 332 LLQMISHGLIAAVLFFLTGITYERTHTLALDKLGGLAKQMPKAFALFTAGSLASLALPGM 391 Query: 390 SGFIGEFLVIMSVFQNS-------NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ 442 SGF+GE V + + + +A+LA+ G++L+ +Y L + R+V +G V Sbjct: 392 SGFVGELTVFLGLITSDAYAPTFKAGIALLAAVGIILTPIYLLSMLRQVFYGAQDPGLVL 451 Query: 443 Q--LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 + L DL RE + + + + G+YP T+ V Sbjct: 452 EDYLGDLRPREMAVALCLLLPILGIGLYPRLATQTYDV 489 >gi|117927488|ref|YP_872039.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidothermus cellulolyticus 11B] gi|117647951|gb|ABK52053.1| NADH dehydrogenase subunit M [Acidothermus cellulolyticus 11B] Length = 507 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 169/491 (34%), Positives = 282/491 (57%), Gaps = 13/491 (2%) Query: 3 LPFLSIVTFLPFLGVFVI--LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 +P+L+++ +P +G VI L +R+ AL + + + V + F+ Sbjct: 1 MPWLTVIGAVPLVGTAVIAALPKERPELAKRT----ALATTLVVLALTCVVAARFNVNGP 56 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE---YMI 116 FQ E WI F Y LGVDGI+++L++LT L P IL+SW+ +E+ R Y+ Sbjct: 57 RFQFTEDVKWIPAFGIHYALGVDGIAVVLLLLTAVLWPIVILASWQECEESRRSVKTYLG 116 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 F+ +E+++IG F + D+ LFY FE LIPM+ II G + YAA KF LY+ G + Sbjct: 117 LFVSMETVLIGVFAATDLFLFYALFEVMLIPMYFIISSRGTARSSYAAMKFLLYSLAGGL 176 Query: 177 FMLFAIVVM-CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 ML A++ + + DL + P + + W+++ FF +FA+K P++P HTWLP+A Sbjct: 177 LMLAAVIALYVLGPHSFRYADLTGL-HLPTTDERWLFLGFFAAFAVKAPLWPLHTWLPDA 235 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 + P GSV L G++ K+G +G +R+ L LFP AS +FAPV+ L++IA++Y +L ++ Sbjct: 236 VTEGPVGGSVLLVGVLDKVGTFGFLRYCLGLFPQASHWFAPVVIVLAVIAVLYGALQAIG 295 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+ +L+AY S++H G +++GIF+ G GA M++HG + AL VG + R Sbjct: 296 QRDLLRLMAYVSVSHFGLISLGIFAFTSQGQSGATLYMVNHGFSTGALLLIVGFLIARHR 355 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR I +GG+ P A ++ ++ + LPG + F+ EFLV++ F LA+ Sbjct: 356 TRGIHDFGGIQQVAPILAGTFLLACLSGLALPGLNTFVSEFLVLVGTFTRYKVAGGLATV 415 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G++L+++Y L +Y++ + G + ++ +DLSLRER ++ P+ + V G YP PI D Sbjct: 416 GIILASIYMLVMYQRTMTG-PVSPRARESRDLSLRERFVIAPLVAVIVALGFYPGPILDI 474 Query: 476 FSVPLSSIIEN 486 +++ ++ Sbjct: 475 IKPAVAATLQQ 485 >gi|227537465|ref|ZP_03967514.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingobacterium spiritivorum ATCC 33300] gi|227242739|gb|EEI92754.1| proton-translocating NADH-quinone oxidoreductase, chain M [Sphingobacterium spiritivorum ATCC 33300] Length = 453 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 165/445 (37%), Positives = 260/445 (58%), Gaps = 43/445 (9%) Query: 6 LSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 L+++ FLP + F++L + S+ +AL + + + + +++ FD R+ Sbjct: 4 LTLIIFLPLIATAFILLLPTKW---NNSYKYLALAFTVVQLLIAGYLYIHFDATRTGINT 60 Query: 65 IEYYHWIDYFC--------------SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN 110 +E Y +++ Y LG+DG+S+ LV+L+ F+ I +SW +IQ++ Sbjct: 61 VEGYQFVEQLSWIRLDLGTIGKLEIDYFLGLDGVSLPLVLLSAFVMLMAIGASW-NIQKS 119 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + Y +VL V+G F +LD LFY+F+E L+P++ +IG+WGG+ R YAA KFF+Y Sbjct: 120 PKGYFALLMVLNMAVMGIFCALDFFLFYVFYEVMLLPLYFLIGIWGGTRREYAAIKFFIY 179 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK-----------------------FPFSI 207 T FGS+FML IV + + T+ + Y + F +S Sbjct: 180 TLFGSVFMLLVIVGLYFSV-TNPVTGAYTFNMLSMMNPDNYVEGGFFSPDSLSTIFGWST 238 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 + +I F +F IK+P+ P HTWLP+AHV+APT S+ LAGI+LK+GGYG IR +F Sbjct: 239 RLVGFIVLFFAFGIKVPIVPLHTWLPDAHVEAPTPISIILAGILLKIGGYGIIRICYGIF 298 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P + I + +I+I+Y ++ ++ Q D+K++IAYSS++HMG+V +GI S G+ Sbjct: 299 PDIAVQTNWWIGLIGVISILYGAMNALAQKDLKRMIAYSSVSHMGFVLLGIASLTTEGIS 358 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 GAMFQM+SHG +S+ALFF VGV+YDR+H R I+ + GL MP+Y + + A++GLP Sbjct: 359 GAMFQMISHGFLSAALFFLVGVVYDRVHDRYIYHFRGLATIMPKYTAFVAIAFFASLGLP 418 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVL 412 G S FIGE VI+ F ++ + L Sbjct: 419 GFSAFIGEAFVIIGTFNAASIGSAL 443 >gi|220910559|ref|YP_002485870.1| NAD(P)H-quinone oxidoreductase subunit 4 [Cyanothece sp. PCC 7425] gi|219867170|gb|ACL47509.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7425] Length = 531 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 178/511 (34%), Positives = 282/511 (55%), Gaps = 38/511 (7%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV-----ALGISTINFIFSLFV-WSVF 55 N P+L+ + FLP L +I F RS GV ALG+ I+F ++ ++ + Sbjct: 3 NFPWLTTIIFLPLLASALIPF-----LPDRSGKGVTIRWYALGVGLIDFALIVYAFYTQY 57 Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 D S Q++E Y WI + + DG+S+ L++LT F+T L++W + R + Sbjct: 58 DFSNSGLQLVESYDWIPQIGLKWSVAADGLSMPLIILTGFITTLATLAAWP-VTLKPRLF 116 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L + I F DML+F++ +E LIP+++++ +WGG +R YAA KF LYT Sbjct: 117 YFLILAMYGGQIAVFAVQDMLVFFLAWELELIPVYLLLAIWGGYKRQYAATKFILYTAGS 176 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 S+F+L A + M + T + D++ + + + + ++ ++A+K+P+ P HTWL Sbjct: 177 SLFILVAGLAMAFYGDTVTF-DMHTLGLKDYTLTFELLVYAGLLIAYAVKLPIVPLHTWL 235 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH +A + LAGI+LKMGGY IR + + P A FAPV+ L ++ IIYA+L Sbjct: 236 PDAHGEATAPVHMLLAGILLKMGGYALIRMNVEMLPAAHARFAPVLVILGVVNIIYAALT 295 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 S Q ++K+ IAYSSI+HMG+V IG+ S G+ GA+ QM+SHGL+ ++LFF VG YD Sbjct: 296 SYAQRNLKRKIAYSSISHMGFVLIGLASFTDLGMSGAILQMVSHGLIGASLFFLVGATYD 355 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT---- 408 R HT + GG+ MP+ + ++A++ LPG SGF+ E +V + F S+ Sbjct: 356 RTHTLILEEMGGVAQKMPKIFAMFTACSLASLALPGMSGFVAELMVFVG-FATSDAYSLP 414 Query: 409 ----VAVLASFGVVLSALYSLWLYRKVVFGVS--KCEKVQQLKDLSLRE----RCMVYPI 458 V LA+ GV+L+ +Y L + R++ +G K + L D RE C++ PI Sbjct: 415 FRIIVVFLAAVGVILTPIYLLSMLREIFYGPENKKLTSHEALIDAEPREVFIIGCLLVPI 474 Query: 459 AVLTVFFGIYP---VPIRDTFSVPLSSIIEN 486 + G+YP I DT ++ L + I Sbjct: 475 ----IGIGLYPKMLTQIYDTTTMHLIARIRE 501 >gi|16329430|ref|NP_440158.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechocystis sp. PCC 6803] gi|17433132|sp|P72823|NU4C2_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4-2; AltName: Full=NAD(P)H dehydrogenase I, subunit D-2; AltName: Full=NDH-1, chain 4-2 gi|1651912|dbj|BAA16838.1| NADH dehydrogenase subunit 4 [Synechocystis sp. PCC 6803] Length = 559 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 166/445 (37%), Positives = 263/445 (59%), Gaps = 17/445 (3%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 + P+L+ + LP + +F+ L G R + ALG+ +F+ +V W+ +D Sbjct: 4 HFPWLTTMIALPLVAALFIPLIPDKDGKQVRWY---ALGVGLADFVLMSYVFWTNYDISS 60 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + FQ+ E + WI F S+ + VDGIS+ LV+L +T I ++W+ + R + Sbjct: 61 TGFQLQEKFSWIPQFGLSWSVSVDGISMPLVLLAGLVTTLSIFAAWQ-VDHKPRLFYFLM 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LVL + IG F++ DMLL +I +E L+P+++++ +WGG +R YAA KF LYT S+F+ Sbjct: 120 LVLYAAQIGVFVAQDMLLLFIMWELELVPVYLLVCIWGGQKRQYAAMKFLLYTAAASVFI 179 Query: 179 LFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A + + + + T I +L + +P +++ +++ +F +K+ +FPFHTWLP+AH Sbjct: 180 LVAALGLAFYGDVTTFDIAEL-GLKDYPIALELFLYAGLLIAFGVKLAIFPFHTWLPDAH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A S+ LAG++LKMGGYG IR L L A YFAP++ L ++ IIY S Q Sbjct: 239 GEASAPVSMILAGVLLKMGGYGLIRLNLGLLEDAHVYFAPILVILGVVNIIYGGFSSFAQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ +AYSS++HMG+V +GI S G+ GAM QMLSHGL+++ LFF GV YDR HT Sbjct: 299 DNMKRRLAYSSVSHMGFVLLGIASFTDLGISGAMLQMLSHGLIAAVLFFLAGVTYDRTHT 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVA 410 + G + MP + + MA++ LPG SGF+ E V + V + TV Sbjct: 359 LSLAQMGNIGKVMPTVFALFTMGAMASLALPGMSGFVSELAVFVGVSSSDIYSTPFKTVT 418 Query: 411 V-LASFGVVLSALYSLWLYRKVVFG 434 V LA+ G+VL+ +Y L + R++ +G Sbjct: 419 VFLAAVGLVLTPIYLLSMLRQLFYG 443 >gi|308746004|ref|YP_003934609.1| NADH-plastoquinone oxidoreductase subunit 4 [Cheilanthes lindheimeri] gi|302375437|gb|ADL29811.1| NADH-plastoquinone oxidoreductase subunit 4 [Cheilanthes lindheimeri] Length = 503 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 175/474 (36%), Positives = 271/474 (57%), Gaps = 21/474 (4%) Query: 2 NLPFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 N+P L++V P F G+ + + G R GI + F+ ++ + F Sbjct: 4 NVPRLTLVVSFPIFAGLIIPILPR---DGNRVTRWYTPGICILEFLPITYIFYCHFQFDS 60 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S Q++E ++WI+ + LG+DG+S+ LV+LT F+T ++W I N R + + Sbjct: 61 QSIQLLETFNWINSIHFHWSLGIDGLSMGLVILTGFVTTLATSAAWP-ITRNTRLFYLLM 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L++ IG F+S D+LLF+ +E LIP+++++ +WGG R+Y+A KF LYT GSIF+ Sbjct: 120 LIMYGGQIGLFVSRDILLFFFMWELELIPVYLLLCLWGGKRRLYSATKFVLYTAGGSIFL 179 Query: 179 LFAIVVM--CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A + M C + S I +P S++ ++I F ++A+K+P+FPFHTWLP+ H Sbjct: 180 LVAALSMSFCGSEVPSFDIQDSMRKSYPLSLEVLIYIGFLVAYAVKLPIFPFHTWLPDTH 239 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAG++LKMGGYG IR L L A + L I IIYASL+SM Q Sbjct: 240 GEAHYSTCMLLAGVLLKMGGYGLIRINLELLTHAHFLLGSWMMSLGAIQIIYASLISMNQ 299 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSSI+HMG+V+IGI S +G+ GA+ QM+SHGL+ +ALFF G YDR T Sbjct: 300 RNLKRRIAYSSISHMGFVSIGIGSLADAGLNGAILQMISHGLIGAALFFLAGTCYDRTRT 359 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TV 409 + GG+ MP+ + +F++A++ LPG SGF+ E LV + V + + Sbjct: 360 FLLDQLGGIAIPMPKLFTMFSIFSLASLALPGMSGFVSELLVFLGVVTSRQYSSACKAGI 419 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK-DLSLRER----CMVYPI 458 +L + G VL+ +Y L + R++ +G +K DL RE C + PI Sbjct: 420 TLLEAIGTVLTPIYLLSMLRRIFYGYKFFDKSNPYSIDLGPRELFILICFLLPI 473 >gi|300113820|ref|YP_003760395.1| proton-translocating NADH-quinone oxidoreductase subunit M [Nitrosococcus watsonii C-113] gi|299539757|gb|ADJ28074.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus watsonii C-113] Length = 485 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 177/480 (36%), Positives = 280/480 (58%), Gaps = 17/480 (3%) Query: 5 FLSIVTFLPFLGVFVILF----SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 FLS++ P +G +I F S L RR+ +G+S + I S + VFD Sbjct: 3 FLSLILITPIIGALLIAFMPPHKSLLI--RRT----TVGVSALVLILSFSLLLVFDASSP 56 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ++E W S Y L +DG+++ +V+L T L+ IL+S+ ++ + + Y IA L Sbjct: 57 EFQLVELEPWNPELGSHYALAMDGLALPMVLLATLLSFIAILASY-NMTDRPKGYNIALL 115 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VLE ++G F++ D +LFY+F+E +LIPMF +I WGG R A+ F LYT GS+FML Sbjct: 116 VLEFGLLGVFMAEDWVLFYVFWELTLIPMFFLIDQWGGKRRQMASLNFVLYTMGGSVFML 175 Query: 180 FAIVVM---CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 +++++ E T+ A S+ P Q +++ F +K+P+FP H WLP AH Sbjct: 176 VSLLIIYTSSSEHSTTIAAMTQAASQMPLEKQILVFLGLLIGFGVKVPIFPLHGWLPLAH 235 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+AP+ S+ L+GI+LKMG YG IR + + P A+ P++ L+L +I+Y L++ Q Sbjct: 236 VEAPSPVSILLSGILLKMGAYGLIR-AIGMLPDAALALQPLLAGLALFSIVYGGLLAWRQ 294 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 +D+K +IAYSSI+HMG V +GI + ++G GA QM++HGLV+ +LF +G++YDR H+ Sbjct: 295 SDLKAMIAYSSISHMGIVILGISALNEAGFLGATMQMIAHGLVAGSLFLLIGLLYDRTHS 354 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R++ Y LV MP++A+ + +A++GLPG GF E ++ F+ +LAS G Sbjct: 355 REVADYSSLVQVMPKFALFTTLALLASIGLPGLVGFPAELHALIGGFERWGWWVLLASLG 414 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 VV+SA Y++ ++ G + E ++ LKDL E +A + G+ P D F Sbjct: 415 VVISAAYAMRTIVRLFTGPVRPE-MRALKDLHGTELASAGVLAFGIIALGVMPASALDLF 473 >gi|260436711|ref|ZP_05790681.1| NAD(P)H-quinone oxidoreductase chain 4-1 [Synechococcus sp. WH 8109] gi|260414585|gb|EEX07881.1| NAD(P)H-quinone oxidoreductase chain 4-1 [Synechococcus sp. WH 8109] Length = 545 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 172/504 (34%), Positives = 279/504 (55%), Gaps = 27/504 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 +P+LS+ +P +G ++ G G++ + AL ++ I F+ ++ + + +D S Sbjct: 16 TVPWLSLSILVPIVGALLVPLVPDKGEGKQVRW-YALIVTLITFLITVAAYLTGYDPSLS 74 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E W+ D ++ +G DG+S+ L++LT+F+T L++W +F+ + FL Sbjct: 75 GLQLSERVSWLPDLGLTWAVGADGLSMPLILLTSFITSLACLAAWPV---SFKPRLFYFL 131 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L + I F DMLLF++ +E LIP+++++ +WGG +R YAA KF LYT S+F Sbjct: 132 LLAMDGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLF 191 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L A + M + + + A++ F Q + +F +K+P+ P HTWLP+A Sbjct: 192 ILLAALAMGFVGGGTPSFEYTALAAKDFGTGFQLLCYAGLLIAFGVKLPIVPLHTWLPDA 251 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY +RF L P A FAP++ L ++ IIYA+L S Sbjct: 252 HGEATAPVHMLLAGILLKMGGYALLRFNCELLPAAHSQFAPLLIVLGVVNIIYAALTSFA 311 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IG+ S G GAM QM+SHGL+ ++LFF VG YDR H Sbjct: 312 QRNLKRKIAYSSISHMGFVLIGVGSFSALGTSGAMLQMISHGLIGASLFFLVGATYDRTH 371 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG+ M + V +A++ LPG SGF+ E +V + Sbjct: 372 TLQLDEMGGIGQKMRIMFALWTVCALASLALPGMSGFVSELMVFAGFATDEAYTLPFRVV 431 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLT 462 + LA+ GV+L+ +Y L + R++ FG K E V L D RE C++ PI Sbjct: 432 ICGLAAVGVILTPIYLLSMLREIFFGKEKEELVSHTNLVDAEPREVYIIGCLLVPI---- 487 Query: 463 VFFGIYPVPIRDTFSVPLSSIIEN 486 + G+YP + D++ + +++ Sbjct: 488 IGIGLYPKLMTDSYRSSIEALVSR 511 >gi|254391149|ref|ZP_05006356.1| NuoM [Streptomyces clavuligerus ATCC 27064] gi|326442796|ref|ZP_08217530.1| NADH:ubiquinone oxidoreductase subunit M [Streptomyces clavuligerus ATCC 27064] gi|197704843|gb|EDY50655.1| NuoM [Streptomyces clavuligerus ATCC 27064] Length = 526 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 177/501 (35%), Positives = 281/501 (56%), Gaps = 31/501 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M+ P L+ +P LG V ++ + RR+ VAL S + + V+ FD G Sbjct: 4 MSFPLLTATAAVPALGAIV---TAAVPAARRTAAKWVALFFSLVTLGLAAGVFVRFDPGG 60 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI--QEN------ 110 +Q+ E + WI D+ Y LGVDGI + L+ LT L PF IL+ W QE Sbjct: 61 DRYQLTESHAWIKDFGVRYELGVDGIGVALIALTALLIPFVILAGWNDADPQETGSTRWR 120 Query: 111 -FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GS 158 + + L++E+MVI +F + D+ LFYI FEA LIPM+ +IG +G + Sbjct: 121 PTQGFFALILMVEAMVILSFEATDVFLFYILFEAMLIPMYFLIGGFGDRAHAGTDRNAAA 180 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS-----KFPFSIQYWMWI 213 +R YAA KF LY G + ML A++ + T S+ ++ A + + W+++ Sbjct: 181 QRSYAAVKFLLYNLVGGLIMLAAVIGLYAVAGTFSLSEIAAARAGGQLELATHTERWLFL 240 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K P++P HTWLPNA +A +V + ++ K+G + +RF L LFP AS + Sbjct: 241 GFFFAFAVKAPLWPLHTWLPNAMGEATAPVAVLITAVVDKVGTFAMLRFCLQLFPEASAW 300 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 PVI L+L++I+Y +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G GA M Sbjct: 301 ATPVILVLALVSIVYGALLAVGQRDIKRLIAYASISHFGFIVLGIFAMTSQGQSGATLYM 360 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG+ ++AL G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 361 VNHGISTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFV 420 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFLV++ F ++A+ G+VL+ALY+L LY++ + G K E V ++ DL RE Sbjct: 421 SEFLVLVGTFARYPVAGIVATSGIVLAALYTLVLYQRTMTGPVKDE-VAKMPDLRARELA 479 Query: 454 MVYPIAVLTVFFGIYPVPIRD 474 +V P+ L + G++P P+ + Sbjct: 480 VVAPLIALLILLGVFPKPLTE 500 >gi|331699300|ref|YP_004335539.1| proton-translocating NADH-quinone oxidoreductase subunit M [Pseudonocardia dioxanivorans CB1190] gi|326953989|gb|AEA27686.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pseudonocardia dioxanivorans CB1190] Length = 537 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 161/480 (33%), Positives = 267/480 (55%), Gaps = 41/480 (8%) Query: 57 KGRSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE-- 113 + + FQ+ WI F + + LG+DG +++++ +T L P + SW R Sbjct: 59 QNGARFQLELSVEWIPAFGTRFALGIDGFALVMLAITAVLVPIVLAFSWNEKLPEGRTQG 118 Query: 114 -YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF 172 + L + +++G F + D+ LFY+FFEA LIPM+ +IG +GG R YAA KFFLY+ Sbjct: 119 GFFSLILATQGLLVGVFAATDVFLFYVFFEAMLIPMYFLIGRFGGPRRQYAAVKFFLYSL 178 Query: 173 FGSIFMLFAIV---VMCWEK---KTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPM 225 G + ML +++ V+ K T + ++L M+ P S Q W+++ FF +FAIK P+ Sbjct: 179 LGGLIMLASVIGLYVVSGNKLGQGTFTWVELQKMAASLPESTQIWLFLGFFVAFAIKAPL 238 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 PFHTWLP+A +AP V L G++ K+G +G +R+ LPLFPLASQ AP++ L++I Sbjct: 239 VPFHTWLPDAGAEAPVGAGVLLVGVLDKVGTFGFLRYCLPLFPLASQKLAPLVLTLAVIG 298 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 I+Y L+++ QTD+K+ ++Y+SIAH G++ +GIF+ G++ M++HG+ + LF Sbjct: 299 ILYGGLLAVGQTDMKRFVSYTSIAHFGFIALGIFAFSTQSFSGSVLYMVNHGISTGMLFI 358 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 VG++ R +R + YGG+ P A V ++ ++++ LPGT+ F+ EFLV++ F Sbjct: 359 VVGLVIARGGSRLVGDYGGVHKVAPLLAGVFLLAGLSSLALPGTNSFVSEFLVLLGSFPR 418 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFG--------------------------VSKCE 439 +LA+ G++ +ALY LW+Y++ + G V+ Sbjct: 419 QPVYTILATVGIIFAALYVLWMYQRTMQGPLRGNAVLAALGGGRGDGPGTMIDPAVAADR 478 Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSVKG 499 DLS RE ++ P+ VL + G P P+ D + ++ + + G +D V G Sbjct: 479 GATGFPDLSKREIGVLTPLVVLILVLGFLPGPVLDVINPTAAATMS----EVGLADPVGG 534 >gi|294814406|ref|ZP_06773049.1| NADH-quinone oxidoreductase subunit M [Streptomyces clavuligerus ATCC 27064] gi|294327005|gb|EFG08648.1| NADH-quinone oxidoreductase subunit M [Streptomyces clavuligerus ATCC 27064] Length = 523 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 177/501 (35%), Positives = 281/501 (56%), Gaps = 31/501 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M+ P L+ +P LG V ++ + RR+ VAL S + + V+ FD G Sbjct: 1 MSFPLLTATAAVPALGAIV---TAAVPAARRTAAKWVALFFSLVTLGLAAGVFVRFDPGG 57 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI--QEN------ 110 +Q+ E + WI D+ Y LGVDGI + L+ LT L PF IL+ W QE Sbjct: 58 DRYQLTESHAWIKDFGVRYELGVDGIGVALIALTALLIPFVILAGWNDADPQETGSTRWR 117 Query: 111 -FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GS 158 + + L++E+MVI +F + D+ LFYI FEA LIPM+ +IG +G + Sbjct: 118 PTQGFFALILMVEAMVILSFEATDVFLFYILFEAMLIPMYFLIGGFGDRAHAGTDRNAAA 177 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS-----KFPFSIQYWMWI 213 +R YAA KF LY G + ML A++ + T S+ ++ A + + W+++ Sbjct: 178 QRSYAAVKFLLYNLVGGLIMLAAVIGLYAVAGTFSLSEIAAARAGGQLELATHTERWLFL 237 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K P++P HTWLPNA +A +V + ++ K+G + +RF L LFP AS + Sbjct: 238 GFFFAFAVKAPLWPLHTWLPNAMGEATAPVAVLITAVVDKVGTFAMLRFCLQLFPEASAW 297 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 PVI L+L++I+Y +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G GA M Sbjct: 298 ATPVILVLALVSIVYGALLAVGQRDIKRLIAYASISHFGFIVLGIFAMTSQGQSGATLYM 357 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG+ ++AL G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 358 VNHGISTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFV 417 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFLV++ F ++A+ G+VL+ALY+L LY++ + G K E V ++ DL RE Sbjct: 418 SEFLVLVGTFARYPVAGIVATSGIVLAALYTLVLYQRTMTGPVKDE-VAKMPDLRARELA 476 Query: 454 MVYPIAVLTVFFGIYPVPIRD 474 +V P+ L + G++P P+ + Sbjct: 477 VVAPLIALLILLGVFPKPLTE 497 >gi|220906272|ref|YP_002481583.1| NAD(P)H-quinone oxidoreductase subunit 4 [Cyanothece sp. PCC 7425] gi|219862883|gb|ACL43222.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7425] Length = 563 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 163/464 (35%), Positives = 264/464 (56%), Gaps = 17/464 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRSSF 62 P+LS + LP + I F + ++ ALG+ +F+ ++ W+ +D G ++F Sbjct: 11 PWLSAIILLPLVAALAIPFLPDRDGKQIRWY--ALGVGIADFVLMVYAFWTNYDPGITTF 68 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 QM E Y W+ ++ + VDG+S+ LV+L +T IL++W+ + R + LVL Sbjct: 69 QMTEKYAWLPQIGLNWAVSVDGVSMPLVLLAGLVTTLAILAAWQ-VNHKPRLFYFLMLVL 127 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 + IG F++ D+LL +I +E L+P+++++ +WGG +R YAA KF LYT SIF+L A Sbjct: 128 YAAQIGVFVAQDILLLFIMWELELVPVYLLVSIWGGQKRQYAATKFLLYTAAASIFILVA 187 Query: 182 IVVMCWEKKTSSIIDL--YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + D+ A +P ++ ++ +F +K+ +FP HTWLP+AH +A Sbjct: 188 GLGLALGGEGAISFDMAELAHKHYPLVLELLLYAGLLIAFGVKLAIFPLHTWLPDAHGEA 247 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 S+ LAG++LKMGGYG IR L L P A YFAP++ L ++ I+Y S Q+++ Sbjct: 248 SAPVSMILAGVLLKMGGYGLIRLNLELLPHAHVYFAPILACLGIVNIVYGGFTSFAQSNM 307 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+ +AYSS++HMG+V +GI S G+ GAM QM+SHGL+++ LFF GV YDR HT ++ Sbjct: 308 KRRLAYSSVSHMGFVLLGIASFTDLGISGAMLQMISHGLIAAVLFFLAGVTYDRTHTLEL 367 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NTVAVL 412 G + MP+ + + MA++ LPG SGF E V + V + + VL Sbjct: 368 EKLGDIGKVMPKVFALFTIGAMASLALPGMSGFASELSVFVGVTSSDIYSTAFRSVTVVL 427 Query: 413 ASFGVVLSALYSLWLYRKVVFGVS---KCEKVQQLKDLSLRERC 453 A+ GV+L+ +Y L L R++ +G C + +K C Sbjct: 428 AAVGVILTPVYLLDLLRRLFYGTGMPPACGIGEMVKPGEQEANC 471 >gi|226365392|ref|YP_002783175.1| NADH dehydrogenase subunit M [Rhodococcus opacus B4] gi|226243882|dbj|BAH54230.1| NADH-quinone oxidoreductase chain M [Rhodococcus opacus B4] Length = 522 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 172/444 (38%), Positives = 267/444 (60%), Gaps = 25/444 (5%) Query: 55 FDKGRSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWK---SIQEN 110 FD +Q +E + WI F + Y LG+DGI+++LV+LT L P +L+ W S + Sbjct: 54 FDPTGEQYQFVESHAWIPAFGTRYILGLDGIALVLVLLTAVLVPLLLLAGWNDGDSAADY 113 Query: 111 FRE-----YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 R Y+ L++E+MVI +F +LD+LLFYIFFEA LIPM+ +IG +GG+ R YAA Sbjct: 114 GRRRMAHTYVALTLMVEAMVIVSFTALDVLLFYIFFEAMLIPMYFLIGGFGGAGRSYAAV 173 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF------------SIQYWMWI 213 KF LY FG + ML A++ + ++ D + F F + +++ Sbjct: 174 KFLLYNLFGGLIMLAAVIGLY---VVTARQDAFGGGTFDFRVIVAEGLDADPGVLKALFL 230 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 F +FA+K P++PFHTWLP A V+A A +V + ++ K+G +G +RF L +FP AS Y Sbjct: 231 GFMFAFAVKAPLWPFHTWLPGAAVEATPASAVLMMAVVDKVGTFGMLRFCLQMFPDASAY 290 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP + L++I IIY +++++ QTD+ +LIAY+SI+H G++ +GIF+ G G+ M Sbjct: 291 FAPFVTVLAVIGIIYGAVLAIGQTDVMRLIAYTSISHFGFIILGIFAMTSQGQAGSTLYM 350 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG+ ++ALF G + R TR I YGG+ P A +V +A + LPG + FI Sbjct: 351 VNHGISTAALFLIAGFLVSRRGTRLIADYGGVQKVAPVMAGTFLVAGLATLSLPGLAPFI 410 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFLV++ F AV+A+F +VL+A+Y LWLY++++ G K E + ++DL RE Sbjct: 411 SEFLVLVGTFSRYRIAAVVATFALVLAAIYVLWLYQRMMTGPLK-EGNETVRDLVRREIA 469 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFS 477 +V P+ L + G+YP P+ D + Sbjct: 470 VVAPLIALLLVLGVYPKPVLDVIT 493 >gi|172036605|ref|YP_001803106.1| NAD(P)H-quinone oxidoreductase subunit 4 [Cyanothece sp. ATCC 51142] gi|171698059|gb|ACB51040.1| NADH dehydrogenase subunit 4 [Cyanothece sp. ATCC 51142] Length = 538 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 166/438 (37%), Positives = 258/438 (58%), Gaps = 21/438 (4%) Query: 37 ALGISTINFIFSLFVWSV-FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 ALG++ +F+ +V+S +D SSFQ++E Y W+ S+ + VDGIS+ LV+L Sbjct: 11 ALGVAIADFVLMCYVFSQHYDPSNSSFQLVETYQWLPTLGLSWTVSVDGISMPLVLLAGL 70 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T + S+W+ + R + L+L + IG F++ D+LL +I +E L+P++++I + Sbjct: 71 VTTLAMFSAWQ-LDHKPRLFYTLMLMLYAAQIGVFVAQDVLLLFIMWELELVPVYLLISI 129 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL--YAMSKFPFSIQYWMW 212 WGG +R YAA KF LYT SIF+L A + M + DL + +P ++ ++ Sbjct: 130 WGGQKRQYAAMKFLLYTAAASIFILVAALAMALYGGDNLTFDLVQLGLKDYPLGLELLLY 189 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 +F +K+ +FP HTWLP+AH +A S+ LAG++LKMGGYG IR + L A Sbjct: 190 AGLLIAFGVKLAVFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYGLIRLNMGLLSDAHI 249 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 YFAP++ L ++ I+Y +L S QT++K+ +AYSS++HMG+V +GI S G+ GAM Q Sbjct: 250 YFAPILATLGVVNIVYGALTSFGQTNMKRRLAYSSVSHMGFVLLGIASFTDLGMSGAMLQ 309 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 MLSHGL+++ LFF GV YDR HT + G + MP+ + MA++ LPG SGF Sbjct: 310 MLSHGLIAALLFFLAGVTYDRTHTLALNDMGDIGEKMPKVFALFTAGAMASLALPGMSGF 369 Query: 393 IGEFLVIMSVFQNSN-------TVAV-LASFGVVLSALYSLWLYRKVVFGVSK---C--- 438 E V + F NS+ TV V L++ GV+L+ +Y L + R++ +G K C Sbjct: 370 ASEIAVFLG-FSNSDIYSSSFRTVTVFLSAVGVILTPIYLLSMLRQLFYGTGKIPVCVVG 428 Query: 439 EKVQQLKDLSLRERCMVY 456 + V+Q KD + M + Sbjct: 429 DTVRQ-KDYQDNQESMCF 445 >gi|78213909|ref|YP_382688.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. CC9605] gi|123577460|sp|Q3AGZ9|NU4C_SYNSC RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|78198368|gb|ABB36133.1| proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus sp. CC9605] Length = 533 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 172/504 (34%), Positives = 279/504 (55%), Gaps = 27/504 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 +P+LS+ +P +G ++ G G++ + AL ++ I F+ ++ + + +D S Sbjct: 4 TVPWLSLSILVPIVGALLVPLVPDKGEGKQVRW-YALIVTLITFLITVAAYLTGYDPSLS 62 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E W+ D ++ +G DG+S+ L++LT+F+T L++W +F+ + FL Sbjct: 63 GLQLSERVSWLPDLGLTWAVGADGLSMPLILLTSFITSLACLAAWPV---SFKPRLFYFL 119 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L + I F DMLLF++ +E LIP+++++ +WGG +R YAA KF LYT S+F Sbjct: 120 LLAMDGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLF 179 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L A + M + + + A++ F Q + +F +K+P+ P HTWLP+A Sbjct: 180 ILLAALAMGFFGGGTPSFEYTALAAKDFGTGFQLLCYAGLLIAFGVKLPIVPLHTWLPDA 239 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY +RF L P A FAP++ L ++ IIYA+L S Sbjct: 240 HGEATAPVHMLLAGILLKMGGYALLRFNCELLPAAHSQFAPLLIVLGVVNIIYAALTSFA 299 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IG+ S G GAM QM+SHGL+ ++LFF VG YDR H Sbjct: 300 QRNLKRKIAYSSISHMGFVLIGVGSFSALGTSGAMLQMISHGLIGASLFFLVGATYDRTH 359 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG+ M + V +A++ LPG SGF+ E +V + Sbjct: 360 TLQLDEMGGIGQKMRIMFALWTVCALASLALPGMSGFVSELMVFAGFATDEAYTLPFRVV 419 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLT 462 + LA+ GV+L+ +Y L + R++ FG K E V L D RE C++ PI Sbjct: 420 ICGLAAVGVILTPIYLLSMLREIFFGKEKEELVSHTNLVDAEPREVYIIGCLLVPI---- 475 Query: 463 VFFGIYPVPIRDTFSVPLSSIIEN 486 + G+YP + D++ + +++ Sbjct: 476 IGIGLYPKLMTDSYRSSIEALVSR 499 >gi|300869462|ref|ZP_07114045.1| NAD(P)H-quinone oxidoreductase chain 4 2 [Oscillatoria sp. PCC 6506] gi|300332519|emb|CBN59243.1| NAD(P)H-quinone oxidoreductase chain 4 2 [Oscillatoria sp. PCC 6506] Length = 560 Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 162/432 (37%), Positives = 252/432 (58%), Gaps = 17/432 (3%) Query: 37 ALGISTINFIFSLFV-WSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 ALG++ +F+ +V W +D ++FQ++E Y WI S+ + VDG+S LV+L Sbjct: 38 ALGVAVADFVLMSYVFWKHYDPNLNTFQLVETYSWIPQLGLSWSVSVDGLSFPLVLLAGL 97 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T I ++W+ + R + L++ + IG F++ D+LL +I +E LIP++++I + Sbjct: 98 VTTLSIFAAWE-VDRKPRLFYFLMLLMYAAQIGVFVAQDVLLLFIMWELELIPVYLLISI 156 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW---EKKTSSIIDLYAMSKFPFSIQYWM 211 WGG R YAA KF +YT SIF+L A + M + T I++L + +P ++ + Sbjct: 157 WGGKNRQYAATKFLIYTAAASIFILVAGLAMAFYGGGNITFDIVEL-GLKNYPLGLELVL 215 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 + +F +K+ +FP HTWLP+AH +A + S+ LAG++LKMGGYG IR L L P A Sbjct: 216 YAGLLIAFGVKLAIFPLHTWLPDAHGEASSPVSMILAGVLLKMGGYGLIRLNLQLLPDAH 275 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 YFAP++ L +I IIY + S Q ++K+ +AYSS++HMG+V +GI S G+ GA+ Sbjct: 276 VYFAPILAMLGVINIIYGAFNSFAQDNMKRRLAYSSVSHMGFVLLGIASFTDLGINGALL 335 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 QMLSHGL++S LFF GV YDR HT + G L MP+ + + MA++ LPG SG Sbjct: 336 QMLSHGLIASVLFFLAGVTYDRTHTMALAEMGDLGKVMPKVFALFTIGVMASVALPGMSG 395 Query: 392 FIGEFLVIMSVFQNS-------NTVAVLASFGVVLSALYSLWLYRKVVF-GVS-KCEKVQ 442 F E V + V + LA+ G++L+ +Y L + R++ + GV+ C+ Sbjct: 396 FASELSVFVGVATSDMYSTTFRGVTVFLAAVGLILTPIYLLSMLRQLFYSGVAPTCDLDG 455 Query: 443 QLKDL-SLRERC 453 LKD L C Sbjct: 456 NLKDTGELEAAC 467 >gi|16331239|ref|NP_441967.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechocystis sp. PCC 6803] gi|417390|sp|P32421|NU4C1_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4-1; AltName: Full=NAD(P)H dehydrogenase I, subunit D-1; AltName: Full=NDH-1, chain 4-1 gi|47602|emb|CAA46289.1| NADH dehydrogenase subunit D [Synechocystis sp. PCC 6803] gi|1001415|dbj|BAA10037.1| NADH dehydrogenase subunit 4 [Synechocystis sp. PCC 6803] Length = 525 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 168/500 (33%), Positives = 278/500 (55%), Gaps = 25/500 (5%) Query: 4 PFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 P+L+ + LP + +F+ + G R ++ +A+G+ I F +S FD Sbjct: 5 PWLTTIILLPIVAALFIPIIPDKDGKTVR-WYSLAVGLVDFALIVYAF-YSGFDLSEPGL 62 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y W+ + +G DG+S+ L++LT F+T +++W + Y + L+ Sbjct: 63 QLVESYTWLPQIDLKWSVGADGLSMPLIILTGFITTLATMAAWPVTLKPKLFYFLMLLMY 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 I F D+LLF++ +E L+P+++I+ +WGG +R+YAA KF LYT GS+F+L A Sbjct: 123 GGQ-IAVFAVQDILLFFLVWELELVPVYLILSIWGGKKRLYAATKFILYTAGGSLFILLA 181 Query: 182 IVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + ++ + A P ++Q ++ F ++ +K+P+FP HTWLP+AH +A Sbjct: 182 GLTLAFYGDVNTFDMSAIAAKDIPVNLQLLLYAGFLIAYGVKLPIFPLHTWLPDAHGEAT 241 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + LAGI+LKMGGY +R + + P A FAPV+ L ++ IIYA+ S Q ++K Sbjct: 242 APAHMLLAGILLKMGGYALLRMNVGMLPDAHAVFAPVLVILGVVNIIYAAFTSFAQRNLK 301 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 + IAYSSI+HMG+V IG+ S G+ GAM QM+SHGL+ ++LFF VG YDR HT + Sbjct: 302 RKIAYSSISHMGFVLIGLASFTDLGMSGAMLQMISHGLIGASLFFMVGATYDRTHTLMLD 361 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT--------VAVL 412 GG+ M + + ++A++ LPG SGF+ E +V + F S+ V VL Sbjct: 362 EMGGIGQKMKKGFAMWTACSLASLALPGMSGFVAELMVFVG-FATSDAYNLVFRTIVVVL 420 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLTVFFG 466 GV+L+ +Y L + R++++G E V L D+ RE C++ PI + G Sbjct: 421 MGVGVILTPIYLLSMLREMLYGPENEELVNHTNLVDVEPREVFIIGCLLVPI----IGIG 476 Query: 467 IYPVPIRDTFSVPLSSIIEN 486 YP I + ++ +++ Sbjct: 477 FYPKLITQIYDPTINQLVQT 496 >gi|254413187|ref|ZP_05026958.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Microcoleus chthonoplastes PCC 7420] gi|196179807|gb|EDX74800.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Microcoleus chthonoplastes PCC 7420] Length = 561 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 259/450 (57%), Gaps = 17/450 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRSSF 62 P+LS + LP + I G ++ ALG++ +F+ L+ W +D ++F Sbjct: 7 PWLSAIVLLPLIASLAIPLLPDKGGKTVRWY--ALGVAIADFLLMLYTFWQHYDSSSATF 64 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI S+ + VDG+S+ LV+L +T I ++W+ + R + LVL Sbjct: 65 QLTEKYTWIPQLGLSWAISVDGLSLPLVLLAGLVTTLSIFAAWQ-VDHKPRLFYFLMLVL 123 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F++ D+LL +I +E L+P+++++ +WGG +R YAA KF LYT SIF+L A Sbjct: 124 YSAQIGVFIAQDILLLFIMWELELVPVYLLVSIWGGQKRQYAATKFLLYTAAASIFILVA 183 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + M + + D+ + +P +++ ++ +F +K+ +FP HTWLP+AH +A Sbjct: 184 GLAMALYGEGTISFDMVELGIKDYPLALELLLYAGLLIAFGVKLAVFPLHTWLPDAHGEA 243 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 S+ LAG++LKMGGYG IR L L A YFAP++ L +I I+Y L S Q ++ Sbjct: 244 SAPVSMILAGVLLKMGGYGLIRLNLELLSDAHVYFAPILAMLGVINIVYGGLNSFAQPNM 303 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+ +A+SS++HMG+V +GI S G+ GAM QM+SHGL+++ LFF GV YDR HT + Sbjct: 304 KRRLAFSSVSHMGFVLLGIASFTDLGISGAMLQMISHGLIAAVLFFLAGVTYDRTHTLAL 363 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVAV-L 412 + GG+ MP+ + MA++ LPG SGF E V + V + TV V L Sbjct: 364 DSMGGIGQVMPKVFALFTAAAMASVALPGMSGFASELSVFVGVTTSDIYSSTFRTVTVFL 423 Query: 413 ASFGVVLSALYSLWLYRKVVFGVS---KCE 439 ++ G++L+ +Y L L R+V +G CE Sbjct: 424 SALGLILTPIYLLSLLRQVFYGAGVAPTCE 453 >gi|41409311|ref|NP_962147.1| NADH dehydrogenase subunit M [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398131|gb|AAS05761.1| NuoM [Mycobacterium avium subsp. paratuberculosis K-10] Length = 522 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 186/514 (36%), Positives = 292/514 (56%), Gaps = 31/514 (6%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRR--SFFGVALGISTINFIFSLFVWSVFDKG 58 +LP+LSI+ +P G V +IL L R+ + G+ G+ T+ ++ V + F G Sbjct: 3 HLPWLSILWLVPLAGSVLIILMPPGL---RQLAKWTGLVFGVLTLAV--AIVVTAGFKTG 57 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKS---IQENFREY 114 + +Q +E + WI F Y LGVDGI+++LV+LT L P ++ W Q Y Sbjct: 58 GAPYQFVEKHQWIPAFGAGYTLGVDGIAVVLVLLTAVLIPVLQVAGWNDGGDRQRGVHAY 117 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFF 173 + L +ESMV+ + ++LD+LLFY+FFEA LIPM+ +IG +G GS R AA KF LY F Sbjct: 118 VALTLAIESMVLVSVIALDVLLFYVFFEAMLIPMYFLIGGFGAGSGRSRAAVKFLLYNLF 177 Query: 174 GSIFMLFAIV---VMCWEKKTSS-----IIDLYAMSKFPF--SIQYWMWIAFFCSFAIKI 223 G + ML A++ V+ + + I+ A ++ ++ +++ F +FAIK Sbjct: 178 GGLIMLAAVIGLYVVTSQHGAGTFDFRDIVAGVASGRYGADPAVSKALFLGFMFAFAIKA 237 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 P++PFH WLP+A V+A A +V + +M K+G +G +R+ L LFP A+ YF P+I L++ Sbjct: 238 PLWPFHRWLPDAAVEATPATAVLMMAVMDKVGTFGMLRYCLQLFPDAATYFRPLIVVLAV 297 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 I +IY ++V++ Q D+ +LIAY+SI+H G++ +GIF G G+ ML+HGL ++A+ Sbjct: 298 IGVIYGAIVAIGQADVMRLIAYTSISHFGFIILGIFVMTSQGQSGSTLYMLNHGLSTAAV 357 Query: 344 FFCVGVIYDRLH--TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 F G + R H +R I YGG+ P A +V MA + LPG + F+ EFLV++ Sbjct: 358 FLIAGFLISR-HGGSRAIVDYGGVQKVAPVLAGTFLVSAMATLSLPGLAPFVSEFLVLLG 416 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F A +VLSA+Y LWLY++++ G +++ DL RE +V P+ L Sbjct: 417 TFNRYWLAAAFGVTALVLSAVYMLWLYQRMMTGPVAGGN-EKIGDLRARELVVVAPLIAL 475 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 + GIYP P+ D ++ +EN G D Sbjct: 476 LLVLGIYPKPVLDI----INPAVENTMTTIGQHD 505 >gi|109156465|ref|YP_654360.1| NADH dehydrogenase subunit 4 [Mussa angulosa] gi|108744112|gb|ABG02334.1| NADH dehydrogenase subunit 4 [Mussa angulosa] Length = 479 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 189/435 (43%), Positives = 268/435 (61%), Gaps = 4/435 (0%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTTF 94 AL S F +L +W FD G FQ IE W + L +DG+S+ ++LTTF Sbjct: 30 ALEWSLAIFFSALVLWGGFD-GEGHFQFIETVGWGGFLAWGPLLFALDGVSLFFLLLTTF 88 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L P CIL S +S + F+E+++ LE +++G FL D+ LFYIFFE LIPMF +IG+ Sbjct: 89 LIPICILISQRSTRFFFKEFLLCLFFLEVLLVGVFLVFDLFLFYIFFEGVLIPMFFLIGI 148 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 WG E A +F + F F +++ ++ ++ L +K S+Q W I Sbjct: 149 WGSREEKVRASFYFFFFTFAGSVFFFFVILFLYQTTGTTNYFLLLNTKLSLSVQKWALIG 208 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 F SFA+K+P+ PFH WLP AHV+AP AGSV LAGI+LK+GGYG +RF PLFP AS Y+ Sbjct: 209 VFLSFAVKLPLIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGLLRFSWPLFPEASFYW 268 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 +PVI F S+IA++Y L++ Q D K+L+AYSS+AHMG V +GIF+ + G+ GA+F ML Sbjct: 269 SPVIVFFSVIAVVYGGLMTCRQIDFKRLVAYSSVAHMGLVPLGIFTHIMEGLVGAVFLML 328 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HG VSSALF V +YDR HTR I Y GL MP + V M+V +++NMGLP + F+G Sbjct: 329 AHGFVSSALFIGVTFLYDRHHTRLIKYYRGLTLTMPFFVVSMLVLSLSNMGLPLSCNFVG 388 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EF +++ F+ V VL FGV+ SA+YSL L+ ++ FG + +DL+ +E Sbjct: 389 EFFSLLAAFKYYYGVGVLVVFGVLFSAIYSLSLFNRISFG-GGSNYLLFNRDLNRQEGFT 447 Query: 455 VYPIAVLTVFFGIYP 469 + P ++ G+ P Sbjct: 448 ILPFLIIIFLGGVVP 462 >gi|307822946|ref|ZP_07653176.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacter tundripaludum SV96] gi|307735721|gb|EFO06568.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacter tundripaludum SV96] Length = 509 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 164/452 (36%), Positives = 266/452 (58%), Gaps = 14/452 (3%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 +AL + + I + V +F+ + FQ++E+Y WI Y +GVDGIS+L + ++ Sbjct: 35 IALLFAALELIATGCVLQLFNADLADFQLVEHYAWIPSLNIEYLIGVDGISVLFLPMSAL 94 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 LT I++SW S+Q R + L LE + IG FL+LDM LF++F+E +L P+F +IG+ Sbjct: 95 LTLMAIVASWNSVQHLTRFHFGLLLALEGITIGVFLALDMALFFLFWELTLPPIFFLIGL 154 Query: 155 WG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS---SIIDLYAMS-------KF 203 WG GS R AA K+ L+ FG + +LFAI+++ T+ SI A S Sbjct: 155 WGIGSGRRGAAIKYTLFMLFGGVPLLFAIIILAVNHATAVGGSIPQDMAFSLPVLLATAL 214 Query: 204 PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFL 263 P ++Q +++ F++K P+ PFHTWLP ++ PT + L G LK+G +G IRF Sbjct: 215 PDNLQALVFLLLLLGFSVKAPLVPFHTWLPTVAMEGPTQLTAVLTG--LKLGAFGIIRFA 272 Query: 264 LPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMK 323 +PL P A+ ++ V+ L I ++Y++L+++ QT++++L+AY+S++H+G V +GI S Sbjct: 273 MPLAPSAAVQYSWVLGILGAITLVYSALIALQQTNLRRLLAYASVSHVGLVIVGIASLNM 332 Query: 324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMAN 383 G++GA+FQ+L+ +V+ +L G I RL + + GGL MPR +F +A+ Sbjct: 333 QGIQGAIFQLLNFTMVAGSLMLVAGFIQHRLGSTEAIHLGGLAKVMPRLTCFYFLFALAS 392 Query: 384 MGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ 443 +GLPGTSGF E L+I+S ++++ A G +LSA Y L R+ FG V+Q Sbjct: 393 IGLPGTSGFPAELLLIVSTMLAHPSISIAALVGAILSAAYMLSFTRRAFFGPVTQAGVKQ 452 Query: 444 LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 ++DL RE ++ A+L + FG +P + T Sbjct: 453 VQDLRPRELTLLCVSALLILGFGFFPNGVLKT 484 >gi|31794333|ref|NP_856826.1| NADH dehydrogenase subunit M [Mycobacterium bovis AF2122/97] gi|31619929|emb|CAD95273.1| PROBABLE NADH DEHYDROGENASE I (CHAIN M) NUOK (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN M) [Mycobacterium bovis AF2122/97] Length = 553 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 185/536 (34%), Positives = 286/536 (53%), Gaps = 50/536 (9%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRS 60 N+P+LS++ +P G +I+ L GRR + +S + S+ V + F Sbjct: 3 NVPWLSVLWLVPLAGAVLIIL---LPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAE 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---------- 109 +Q +E + WI F Y LGVDGI+++LV+LTT L P +++ W + Sbjct: 60 PYQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGR 119 Query: 110 -------------------NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 Y+ L +ESMV+ + ++LD+LLFY+FFEA LIPM+ Sbjct: 120 YPQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYF 179 Query: 151 IIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAI-----VVMCWEKKT---SSIIDLYAMS 201 +IG +G G+ R AA KF LY FG + ML A+ V ++ T I+ A Sbjct: 180 LIGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAG 239 Query: 202 KFPFSIQYW--MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 ++ + +++ F +FAIK P++PFH WLP+A V++ A +V + +M K+G +G Sbjct: 240 RYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM 299 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +R+ L LFP S YF P+I L++I +IY ++V++ QTD+ +LIAY+SI+H G++ GIF Sbjct: 300 LRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIF 359 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 G G+ ML+HGL ++A+F G + R +R I YGG+ P A MV Sbjct: 360 VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRDSRSIADYGGVQKVAPILAGTFMVS 419 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 MA + LPG + FI EFLV++ F A +VLSA+Y LWLY++V+ G E Sbjct: 420 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTG-PIAE 478 Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 +++ DL RE +V P+ L + G+YP P+ D ++ +EN G D Sbjct: 479 GNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDI----INPAVENTMTTIGQHD 530 >gi|148824351|ref|YP_001289105.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis F11] gi|148722878|gb|ABR07503.1| NADH dehydrogenase I chain M nuoM (NADH-ubiquinone oxidoreductase chain M) [Mycobacterium tuberculosis F11] Length = 553 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 185/536 (34%), Positives = 286/536 (53%), Gaps = 50/536 (9%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRS 60 N+P+LS++ +P G +I+ L GRR + +S + S+ V + F Sbjct: 3 NVPWLSVLWLVPLAGAVLIIL---LPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAE 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---------- 109 +Q +E + WI F Y LGVDGI+++LV+LTT L P +++ W + Sbjct: 60 PYQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGR 119 Query: 110 -------------------NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 Y+ L +ESMV+ + ++LD+LLFY+FFEA LIPM+ Sbjct: 120 YPQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYF 179 Query: 151 IIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAI-----VVMCWEKKT---SSIIDLYAMS 201 +IG +G G+ R AA KF LY FG + ML A+ V ++ T I+ A Sbjct: 180 LIGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAG 239 Query: 202 KFPFSIQYW--MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 ++ + +++ F +FAIK P++PFH WLP+A V++ A +V + +M K+G +G Sbjct: 240 RYGADPAVFKALFLGFMFTFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM 299 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +R+ L LFP S YF P+I L++I +IY ++V++ QTD+ +LIAY+SI+H G++ GIF Sbjct: 300 LRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIF 359 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 G G+ ML+HGL ++A+F G + R +R I YGG+ P A MV Sbjct: 360 VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVS 419 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 MA + LPG + FI EFLV++ F A +VLSA+Y LWLY++V+ G E Sbjct: 420 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTG-PVAE 478 Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 +++ DL RE +V P+ L + G+YP P+ D ++ +EN G D Sbjct: 479 GNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDI----INPAVENTMTTIGQHD 530 >gi|118462860|ref|YP_883197.1| NADH dehydrogenase subunit M [Mycobacterium avium 104] gi|254776467|ref|ZP_05217983.1| NADH dehydrogenase subunit M [Mycobacterium avium subsp. avium ATCC 25291] gi|118164147|gb|ABK65044.1| NADH-quinone oxidoreductase chain m [Mycobacterium avium 104] Length = 522 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 186/514 (36%), Positives = 291/514 (56%), Gaps = 31/514 (6%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRR--SFFGVALGISTINFIFSLFVWSVFDKG 58 LP+LSI+ +P G V +IL L R+ + G+ G+ T+ ++ V + F G Sbjct: 3 QLPWLSILWLVPLAGSVLIILMPPGL---RQLAKWTGLVFGVLTLAV--AIVVTAGFKTG 57 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKS---IQENFREY 114 + +Q +E + WI F Y LGVDGI+++LV+LT L P ++ W Q Y Sbjct: 58 GAPYQFVEKHQWIPAFGAGYTLGVDGIAVVLVLLTAVLIPVLQVAGWNDGGDRQRGVHAY 117 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFF 173 + L +ESMV+ + ++LD+LLFY+FFEA LIPM+ +IG +G GS R AA KF LY F Sbjct: 118 VALTLAIESMVLVSVIALDVLLFYVFFEAMLIPMYFLIGGFGAGSGRSRAAVKFLLYNLF 177 Query: 174 GSIFMLFAIV---VMCWEKKTSS-----IIDLYAMSKFPF--SIQYWMWIAFFCSFAIKI 223 G + ML A++ V+ + + I+ A ++ ++ +++ F +FAIK Sbjct: 178 GGLIMLAAVIGLYVVTSQHGAGTFDFRDIVAGVASGRYGADPAVSKALFLGFMFAFAIKA 237 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 P++PFH WLP+A V+A A +V + +M K+G +G +R+ L LFP A+ YF P+I L++ Sbjct: 238 PLWPFHRWLPDAAVEATPATAVLMMAVMDKVGTFGMLRYCLQLFPDAATYFRPLIVVLAV 297 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 I +IY ++V++ Q D+ +LIAY+SI+H G++ +GIF G G+ ML+HGL ++A+ Sbjct: 298 IGVIYGAIVAIGQADVMRLIAYTSISHFGFIILGIFVMTSQGQSGSTLYMLNHGLSTAAV 357 Query: 344 FFCVGVIYDRLH--TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 F G + R H +R I YGG+ P A +V MA + LPG + F+ EFLV++ Sbjct: 358 FLIAGFLISR-HGGSRAIADYGGVQKVAPVLAGTFLVSAMATLSLPGLAPFVSEFLVLLG 416 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F A +VLSA+Y LWLY++++ G +++ DL RE +V P+ L Sbjct: 417 TFNRYWLAAAFGVTALVLSAVYMLWLYQRMMTGPVAGGN-EKIGDLRARELVVVAPLIAL 475 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 + GIYP P+ D ++ +EN G D Sbjct: 476 LLVLGIYPKPVLDI----INPAVENTMTTIGQHD 505 >gi|289755276|ref|ZP_06514654.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis EAS054] gi|289695863|gb|EFD63292.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis EAS054] Length = 553 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 185/536 (34%), Positives = 286/536 (53%), Gaps = 50/536 (9%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRS 60 N+P+LS++ +P G +I+ L GRR + +S + S+ V + F Sbjct: 3 NVPWLSVLWLVPLAGAVLIIL---LPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAE 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---------- 109 +Q +E + WI F Y LGVDGI+++LV+LTT L P +++ W + Sbjct: 60 PYQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGR 119 Query: 110 -------------------NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 Y+ L +ESMV+ + ++LD+LLFY+FFEA LIPM+ Sbjct: 120 YPQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYF 179 Query: 151 IIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAI-----VVMCWEKKT---SSIIDLYAMS 201 +IG +G G+ R AA KF LY FG + ML A+ V ++ T I+ A Sbjct: 180 LIGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAG 239 Query: 202 KFPFSIQYW--MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 ++ + +++ F +FAIK P++PFH WLP+A V++ A +V + +M K+G +G Sbjct: 240 RYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM 299 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +R+ L LFP S YF P+I L++I +IY ++V++ QTD+ +LIAY+SI+H G++ GIF Sbjct: 300 LRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIF 359 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 G G+ ML+HGL ++A+F G + R +R I YGG+ P A MV Sbjct: 360 VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGAFMVS 419 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 MA + LPG + FI EFLV++ F A +VLSA+Y LWLY++V+ G E Sbjct: 420 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTG-PVAE 478 Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 +++ DL RE +V P+ L + G+YP P+ D ++ +EN G D Sbjct: 479 GNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDI----INPAVENTMTTIGQHD 530 >gi|77164758|ref|YP_343283.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus oceani ATCC 19707] gi|254434028|ref|ZP_05047536.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Nitrosococcus oceani AFC27] gi|76883072|gb|ABA57753.1| NADH dehydrogenase subunit M [Nitrosococcus oceani ATCC 19707] gi|207090361|gb|EDZ67632.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Nitrosococcus oceani AFC27] Length = 485 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 176/480 (36%), Positives = 278/480 (57%), Gaps = 17/480 (3%) Query: 5 FLSIVTFLPFLGVFVILF----SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 FLS++ P +G +I F S L RR+ +G+S + I S + VFD Sbjct: 3 FLSLILITPVIGALIIAFMPPHKSLLI--RRT----TVGVSALVLILSFSLLLVFDASSP 56 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ++E W S Y L +DG+++ +V+L T L+ IL+S+ ++ + + Y IA L Sbjct: 57 EFQLVELKPWNPELGSHYALAMDGLALPMVLLATLLSFIAILASY-NMTDRPKGYNIAML 115 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VLE V+G F++ D LFY+F+E +LIPMF +I WGG R A+ F LYT GS+FML Sbjct: 116 VLECGVLGVFMAEDWALFYVFWELTLIPMFFLIDQWGGKRRQMASLNFVLYTMGGSVFML 175 Query: 180 FAIVVM---CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 +++++ E T+ A S+ P Q +++ F +K+P+FP H WLP AH Sbjct: 176 VSLLIIYTSSSEHSTTIAAMTQAASQMPLDKQILVFLGLLIGFGVKVPIFPLHGWLPLAH 235 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+AP+ S+ L+GI+LKMG YG IR + + P A+ P++ L+L +I+Y L++ Q Sbjct: 236 VEAPSPVSILLSGILLKMGAYGLIRAI-GMLPDAALALQPLLAGLALFSIVYGGLLAWRQ 294 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 +D+K +IAYSSI+HMG V +GI + ++G GA QM++HGLV+ +LF +G++YDR H+ Sbjct: 295 SDLKAMIAYSSISHMGIVILGISALNEAGFLGATMQMIAHGLVAGSLFLLIGLLYDRTHS 354 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R++ Y LV MP++A+ + +A++GLPG GF E ++ F+ +L S G Sbjct: 355 REVADYSSLVQVMPKFALFTTLALLASIGLPGLVGFPAELHALIGSFERWGWWVLLVSLG 414 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 VV+SA Y++ ++ G + E ++ LKDL E +A + G+ P + F Sbjct: 415 VVISAAYAMRTIVRLFTGPVRPE-MRALKDLHGTELASAGVLAFGIIALGLMPASALELF 473 >gi|325295372|ref|YP_004281886.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065820|gb|ADY73827.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfurobacterium thermolithotrophum DSM 11699] Length = 485 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 167/460 (36%), Positives = 274/460 (59%), Gaps = 12/460 (2%) Query: 35 GVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTF 94 G+ LG+STI + + +KG + + + Y D+ + HL VDGIS++L+ +T F Sbjct: 36 GIFLGLSTIYLLLN-----YPNKGFAFEEFYKIYPPFDF--NLHLAVDGISLILLSVTAF 88 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L LSSW E Y L+ ++G F SL++L F+IF+E +L+PMF IG+ Sbjct: 89 LAITVTLSSWNV--EKPGAYFFLVLIFLGPMVGVFTSLNLLWFFIFWEFTLVPMFFHIGI 146 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 WG RIYAA KFF+YT SIF+L I+++ T +L+ ++ P I +W+ Sbjct: 147 WGAENRIYAAMKFFIYTHLASIFLLLGIIILFLNTHTFDFTNLFGVNLEP-GIAKLVWVL 205 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 F FA+K+P+ PFHTWLP+AHVQAP+ SVFLAG++LKMG YG +R+ + + P S++F Sbjct: 206 MFIGFAVKMPVVPFHTWLPDAHVQAPSPISVFLAGLLLKMGAYGLLRWEIFMLPETSKFF 265 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 AP++ F++++ I YA ++ + IKK++AYSSI HMG+V +G+ + +G+ A+++M+ Sbjct: 266 APLMAFIAVLTIFYAGFRALAEDHIKKMVAYSSINHMGFVLLGLSAITAAGISAAIYEMV 325 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 H L+ S LF G I+ + HT I GGL+ +P + ++ +A +GLPGT+GFIG Sbjct: 326 GHALIISLLFMIAGYIHSKTHTWYISELGGLMKKIPGLMTMFVIGVLAAVGLPGTAGFIG 385 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG-VSKC-EKVQQLKDLSLRER 452 E V+++ F + ++ LSA + +W+ ++ VFG + +C + ++ LK+L L E Sbjct: 386 EITVVIAAFDYYGWIMIIVPLASALSAGFFMWMLQRAVFGPLKECFKDLKSLKELPLIEN 445 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTG 492 + V + GI P + + ++ + + + + L G Sbjct: 446 IPLVMYIVAFIVIGIVPSLVFNLYNPVVDAFAQLFNLNRG 485 >gi|215432116|ref|ZP_03430035.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis EAS054] Length = 554 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 185/536 (34%), Positives = 286/536 (53%), Gaps = 50/536 (9%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRS 60 N+P+LS++ +P G +I+ L GRR + +S + S+ V + F Sbjct: 4 NVPWLSVLWLVPLAGAVLIIL---LPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAE 60 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---------- 109 +Q +E + WI F Y LGVDGI+++LV+LTT L P +++ W + Sbjct: 61 PYQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGR 120 Query: 110 -------------------NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 Y+ L +ESMV+ + ++LD+LLFY+FFEA LIPM+ Sbjct: 121 YPQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYF 180 Query: 151 IIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAI-----VVMCWEKKT---SSIIDLYAMS 201 +IG +G G+ R AA KF LY FG + ML A+ V ++ T I+ A Sbjct: 181 LIGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAG 240 Query: 202 KFPFSIQYW--MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 ++ + +++ F +FAIK P++PFH WLP+A V++ A +V + +M K+G +G Sbjct: 241 RYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM 300 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +R+ L LFP S YF P+I L++I +IY ++V++ QTD+ +LIAY+SI+H G++ GIF Sbjct: 301 LRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIF 360 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 G G+ ML+HGL ++A+F G + R +R I YGG+ P A MV Sbjct: 361 VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGAFMVS 420 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 MA + LPG + FI EFLV++ F A +VLSA+Y LWLY++V+ G E Sbjct: 421 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTG-PVAE 479 Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 +++ DL RE +V P+ L + G+YP P+ D ++ +EN G D Sbjct: 480 GNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDI----INPAVENTMTTIGQHD 531 >gi|223931109|ref|YP_002586971.1| NADH-plastoquinone oxidoreductase subunit 4 [Syntrichia ruralis] gi|219562323|gb|ACL27654.1| NADH-plastoquinone oxidoreductase subunit 4 [Syntrichia ruralis] Length = 499 Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 179/505 (35%), Positives = 284/505 (56%), Gaps = 29/505 (5%) Query: 2 NLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWS-VFDKGR 59 N P+L+ + LP G+ + LF + G LGI + F+ +V+ F Sbjct: 3 NFPWLTTIVLLPISAGLVIPLFPTK---GNNIVRWYTLGICLLEFLLISYVFCYQFKFSN 59 Query: 60 SSFQMIEYYHWIDYFCSYH--LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 Q+ E Y+WI+ F ++H LG+DG+SI L++LT F+T L++W + N R + Sbjct: 60 QLIQLNEDYNWIN-FLNFHWRLGIDGLSIGLILLTGFITTLATLAAWP-VTRNPRLFYFL 117 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L + S IG F S D+LLF+ +E LIP+++++ +WGG R+YA KF LYT GSIF Sbjct: 118 MLAMYSGQIGLFASQDILLFFFMWELELIPVYLLLCIWGGKRRLYAGTKFILYTAGGSIF 177 Query: 178 MLFAIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L + M + ++L + +P ++ +++ FF ++A+K+P+FP HTWLP+ Sbjct: 178 ILMGALTMGFYGSNQLTLNLQNLCNKSYPIELEIILYLGFFIAYAVKLPIFPLHTWLPDT 237 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + + LAGI+LKMGGYG IR + L P A FAP I + I I+YA+ S Sbjct: 238 HGEAHYSTCMLLAGILLKMGGYGIIRINMELLPHAHLIFAPWIVLIGAIQIVYAAFTSFS 297 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S G+ GA+ QM+SHGL+ +ALFF G+ YDR Sbjct: 298 QRNLKRRIAYSSISHMGFVLIGIGSMTNLGLNGAILQMISHGLIGAALFFLAGISYDRTR 357 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV-------FQNSNT 408 T + GG MP+ + F+MA++ LPG SGF+ EFL+ + + F Sbjct: 358 TLFLDQMGGTAIYMPKIFTMFSSFSMASLALPGMSGFVAEFLIFLGIVISHKYSFNFKIV 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER------CMVYPIAVLT 462 + ++ + G++L+ +Y L + R+V +G K K D+ R C+++PI Sbjct: 418 ITIIEAIGIILTPIYLLSMLRQVFYGY-KFSKFLVFSDMDAGPREIFILICLIFPI---- 472 Query: 463 VFFGIYPVPIRDTFSVPLSSIIENY 487 + GIYP + ++ ++ I+ + Sbjct: 473 IGIGIYPNSVLSLWNSKVNFILSKF 497 >gi|15610293|ref|NP_217673.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis H37Rv] gi|148663012|ref|YP_001284535.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis H37Ra] gi|253800191|ref|YP_003033192.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis KZN 1435] gi|289444722|ref|ZP_06434466.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis T46] gi|289448837|ref|ZP_06438581.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis CPHL_A] gi|289555430|ref|ZP_06444640.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis KZN 605] gi|289575869|ref|ZP_06456096.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis K85] gi|289746965|ref|ZP_06506343.1| NADH dehydrogenase subunit I chain M nuoM (NADH-ubiquinone oxidoreductase M) [Mycobacterium tuberculosis 02_1987] gi|289751835|ref|ZP_06511213.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis T92] gi|289763340|ref|ZP_06522718.1| NADH dehydrogenase I (chain M) nuoM (NADH-ubiquinone oxidoreductase chain M) [Mycobacterium tuberculosis GM 1503] gi|298526631|ref|ZP_07014040.1| NADH-quinone oxidoreductase subunit M [Mycobacterium tuberculosis 94_M4241A] gi|308232354|ref|ZP_07664064.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu001] gi|308370165|ref|ZP_07666878.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu002] gi|308371250|ref|ZP_07667121.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu003] gi|308372442|ref|ZP_07667382.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu004] gi|308373655|ref|ZP_07433212.2| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu005] gi|308374790|ref|ZP_07437412.2| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu006] gi|308376005|ref|ZP_07668167.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu007] gi|308377238|ref|ZP_07668467.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu008] gi|308378205|ref|ZP_07481905.2| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu009] gi|308379424|ref|ZP_07486252.2| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu010] gi|308380587|ref|ZP_07490470.2| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu011] gi|308406065|ref|ZP_07669501.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu012] gi|6647687|sp|O53307|NUOM_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit M; AltName: Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1 subunit M gi|3242280|emb|CAA16668.1| PROBABLE NADH DEHYDROGENASE I (CHAIN M) NUOK (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN M) [Mycobacterium tuberculosis H37Rv] gi|148507164|gb|ABQ74973.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis H37Ra] gi|253321694|gb|ACT26297.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis KZN 1435] gi|289417641|gb|EFD14881.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis T46] gi|289421795|gb|EFD18996.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis CPHL_A] gi|289440062|gb|EFD22555.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis KZN 605] gi|289540300|gb|EFD44878.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis K85] gi|289687493|gb|EFD54981.1| NADH dehydrogenase subunit I chain M nuoM (NADH-ubiquinone oxidoreductase M) [Mycobacterium tuberculosis 02_1987] gi|289692422|gb|EFD59851.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis T92] gi|289710846|gb|EFD74862.1| NADH dehydrogenase I (chain M) nuoM (NADH-ubiquinone oxidoreductase chain M) [Mycobacterium tuberculosis GM 1503] gi|298496425|gb|EFI31719.1| NADH-quinone oxidoreductase subunit M [Mycobacterium tuberculosis 94_M4241A] gi|308214186|gb|EFO73585.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu001] gi|308324960|gb|EFP13811.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu002] gi|308329377|gb|EFP18228.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu003] gi|308333206|gb|EFP22057.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu004] gi|308336696|gb|EFP25547.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu005] gi|308340537|gb|EFP29388.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu006] gi|308344476|gb|EFP33327.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu007] gi|308348472|gb|EFP37323.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu008] gi|308353102|gb|EFP41953.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu009] gi|308357075|gb|EFP45926.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu010] gi|308361029|gb|EFP49880.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu011] gi|308364638|gb|EFP53489.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis SUMu012] gi|323718246|gb|EGB27426.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis CDC1551A] gi|326902619|gb|EGE49552.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis W-148] gi|328459928|gb|AEB05351.1| NADH dehydrogenase subunit I M nuoM [Mycobacterium tuberculosis KZN 4207] Length = 553 Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 185/536 (34%), Positives = 286/536 (53%), Gaps = 50/536 (9%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRS 60 N+P+LS++ +P G +I+ L GRR + +S + S+ V + F Sbjct: 3 NVPWLSVLWLVPLAGAVLIIL---LPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAE 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---------- 109 +Q +E + WI F Y LGVDGI+++LV+LTT L P +++ W + Sbjct: 60 PYQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGR 119 Query: 110 -------------------NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 Y+ L +ESMV+ + ++LD+LLFY+FFEA LIPM+ Sbjct: 120 YPQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYF 179 Query: 151 IIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAI-----VVMCWEKKT---SSIIDLYAMS 201 +IG +G G+ R AA KF LY FG + ML A+ V ++ T I+ A Sbjct: 180 LIGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAG 239 Query: 202 KFPFSIQYW--MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 ++ + +++ F +FAIK P++PFH WLP+A V++ A +V + +M K+G +G Sbjct: 240 RYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM 299 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +R+ L LFP S YF P+I L++I +IY ++V++ QTD+ +LIAY+SI+H G++ GIF Sbjct: 300 LRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIF 359 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 G G+ ML+HGL ++A+F G + R +R I YGG+ P A MV Sbjct: 360 VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVS 419 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 MA + LPG + FI EFLV++ F A +VLSA+Y LWLY++V+ G E Sbjct: 420 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTG-PVAE 478 Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 +++ DL RE +V P+ L + G+YP P+ D ++ +EN G D Sbjct: 479 GNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDI----INPAVENTMTTIGQHD 530 >gi|15842733|ref|NP_337770.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis CDC1551] gi|167970174|ref|ZP_02552451.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis H37Ra] gi|215405154|ref|ZP_03417335.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis 02_1987] gi|215413024|ref|ZP_03421725.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis 94_M4241A] gi|215428613|ref|ZP_03426532.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis T92] gi|218754936|ref|ZP_03533732.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis GM 1503] gi|254365782|ref|ZP_04981827.1| NADH dehydrogenase I (chain M) nuoM (NADH-ubiquinone oxidoreductase chain M) [Mycobacterium tuberculosis str. Haarlem] gi|254552247|ref|ZP_05142694.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188198|ref|ZP_05765672.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis CPHL_A] gi|260202304|ref|ZP_05769795.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis T46] gi|260206496|ref|ZP_05773987.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis K85] gi|294995508|ref|ZP_06801199.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis 210] gi|297635800|ref|ZP_06953580.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis KZN 4207] gi|297732797|ref|ZP_06961915.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis KZN R506] gi|313660130|ref|ZP_07817010.1| NADH:ubiquinone oxidoreductase subunit M [Mycobacterium tuberculosis KZN V2475] gi|13883055|gb|AAK47584.1| NADH dehydrogenase I, M subunit [Mycobacterium tuberculosis CDC1551] gi|134151295|gb|EBA43340.1| NADH dehydrogenase I (chain M) nuoM (NADH-ubiquinone oxidoreductase chain M) [Mycobacterium tuberculosis str. Haarlem] Length = 554 Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 185/536 (34%), Positives = 286/536 (53%), Gaps = 50/536 (9%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRS 60 N+P+LS++ +P G +I+ L GRR + +S + S+ V + F Sbjct: 4 NVPWLSVLWLVPLAGAVLIIL---LPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAE 60 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---------- 109 +Q +E + WI F Y LGVDGI+++LV+LTT L P +++ W + Sbjct: 61 PYQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGR 120 Query: 110 -------------------NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 Y+ L +ESMV+ + ++LD+LLFY+FFEA LIPM+ Sbjct: 121 YPQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYF 180 Query: 151 IIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAI-----VVMCWEKKT---SSIIDLYAMS 201 +IG +G G+ R AA KF LY FG + ML A+ V ++ T I+ A Sbjct: 181 LIGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAG 240 Query: 202 KFPFSIQYW--MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 ++ + +++ F +FAIK P++PFH WLP+A V++ A +V + +M K+G +G Sbjct: 241 RYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM 300 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +R+ L LFP S YF P+I L++I +IY ++V++ QTD+ +LIAY+SI+H G++ GIF Sbjct: 301 LRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIF 360 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 G G+ ML+HGL ++A+F G + R +R I YGG+ P A MV Sbjct: 361 VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVS 420 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 MA + LPG + FI EFLV++ F A +VLSA+Y LWLY++V+ G E Sbjct: 421 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTG-PVAE 479 Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 +++ DL RE +V P+ L + G+YP P+ D ++ +EN G D Sbjct: 480 GNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDI----INPAVENTMTTIGQHD 531 >gi|290958248|ref|YP_003489430.1| NADH dehydrogenase subunit NuoM [Streptomyces scabiei 87.22] gi|260647774|emb|CBG70879.1| NuoM, NADH dehydrogenase subunit [Streptomyces scabiei 87.22] Length = 523 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 181/517 (35%), Positives = 285/517 (55%), Gaps = 31/517 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV-ALGISTINFIFSLFVWSVFDKGR 59 M+ P L+ LP LG ++ + RR+ + AL +S + + V FD Sbjct: 1 MSFPLLTATAALPALGAIA---TAAVPAQRRNAAKLLALTVSLATLVLAAIVLFRFDPDG 57 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ------ENFR 112 +Q+ E + WI D+ Y LGVDGI++ L+ LT L PF IL+ W + +R Sbjct: 58 DRYQLTESHAWIADFGVRYELGVDGIAVALIALTALLIPFIILAGWHDADPVETGSKRWR 117 Query: 113 E---YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GS 158 Y L +E+MVI +F + D+ LFYIFFEA LIPM+ +IG +G + Sbjct: 118 PTQGYFALVLAVEAMVIISFEATDVFLFYIFFEAMLIPMYFLIGGFGDRAHQHGEETAAT 177 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPF--SIQYWMWI 213 +R YAA KF LY G + ML A++ V+ I + A S + W+++ Sbjct: 178 QRSYAAVKFLLYNLVGGLIMLAAVIGLYVVAGNFSLPEIAEARANGTLEMATSTERWLFL 237 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K P++P HTWLPNA ++ +V + ++ K+G + +RF L LFP AS++ Sbjct: 238 GFFFAFAVKAPLWPLHTWLPNAMQESTAPVAVLITAVVDKVGTFAMLRFCLGLFPEASEW 297 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 PVI L+LI+IIY +L+++ Q DIK+L+AY+SI+H G++ +GIF+ G GA M Sbjct: 298 ATPVILVLALISIIYGALLAVGQRDIKRLVAYASISHFGFIILGIFAMTSQGQSGATLYM 357 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG+ ++AL G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 358 VNHGISTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFV 417 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFLV++ F + ++A+ G+VL+ALY L LY++ + G K E V+ + DL RE Sbjct: 418 SEFLVLVGTFARYPVIGIIATAGIVLAALYVLVLYQRTMTGPVKAE-VEGMPDLRARELV 476 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 +V P+ VL + G+YP P+ D + + + + K Sbjct: 477 VVTPLIVLLLVLGVYPKPLTDIVNPAVEHTMSDVQKK 513 >gi|255535807|ref|YP_003096178.1| NADH-ubiquinone oxidoreductase chain M [Flavobacteriaceae bacterium 3519-10] gi|255342003|gb|ACU08116.1| NADH-ubiquinone oxidoreductase chain M [Flavobacteriaceae bacterium 3519-10] Length = 497 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 163/467 (34%), Positives = 272/467 (58%), Gaps = 24/467 (5%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEY---YHWIDYFCS-YHLGVDGISILLVVL 91 +ALG + +L++ + D + +++Y Y W + S H G+DG+S+L+++L Sbjct: 30 LALGFAFAQMFLTLYMLAGLDFKPTVDGVLQYEINYPWSQFIRSNLHFGIDGMSMLMLLL 89 Query: 92 TTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 T LTP ILSS+ + L+++ +IG F +LD LLFYIF+E +LIP+++I Sbjct: 90 TNILTPLIILSSFNEKPGYRNTFYGLILLMQFGLIGIFTALDGLLFYIFWEVTLIPIWLI 149 Query: 152 IGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW 210 G+WG +++I +FF+YTF GS+FML ++ + + ++ DLY Sbjct: 150 AGIWGQENKKIEFTTRFFVYTFVGSLFMLLGLIFVYTNSASFALTDLYNAQLNTTEQTVV 209 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP-- 268 W FF +FA+K+P+FPFH+W + + +PT G++ L+GIMLKM YG +R+LLP+ P Sbjct: 210 FWFIFF-AFAVKLPVFPFHSWQADTYTYSPTQGTMLLSGIMLKMAVYGLLRYLLPITPDP 268 Query: 269 ---LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSG---- 321 ++ Q ++ L+++ I++ +L+++ D K+++AYSS++H+G + GI + Sbjct: 269 VLGISGQ----IVLVLAIVGIVHGALIAIAHNDTKRILAYSSLSHVGLMVAGIMASAIVT 324 Query: 322 MK-----SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 MK G EGAM Q +HG+ LF+C ++Y R TRDI GGL P++AV+ Sbjct: 325 MKGSLSTQGGEGAMVQAFAHGINIVGLFYCADILYKRFKTRDIRQMGGLAKVAPKFAVLF 384 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 M+ + ++GLP T+GFIGEF++I S+F + AV+A ++ SA+Y +Y K +FG Sbjct: 385 MIILLGSIGLPLTNGFIGEFILIKSIFDYNKLAAVVAGLTMIFSAVYLFRMYGKAMFGEG 444 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 + +DLS E ++ +A + FG++P P+ D S L I Sbjct: 445 DERVLSSAEDLSGIEFSVLATLAGFVILFGVFPQPLIDMVSSSLKFI 491 >gi|121639040|ref|YP_979264.1| NADH dehydrogenase subunit M [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991532|ref|YP_002646221.1| NADH dehydrogenase subunit M [Mycobacterium bovis BCG str. Tokyo 172] gi|121494688|emb|CAL73169.1| Probable NADH dehydrogenase I (chain M) nuoM [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774647|dbj|BAH27453.1| NADH dehydrogenase subunit M [Mycobacterium bovis BCG str. Tokyo 172] Length = 553 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 185/536 (34%), Positives = 286/536 (53%), Gaps = 50/536 (9%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRS 60 N+P+LS++ +P G +I+ L GRR + +S + S+ V + F Sbjct: 3 NVPWLSVLWLVPLAGAVLIIL---LPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAE 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---------- 109 +Q +E + WI F Y LGVDGI+++LV+LTT L P +++ W + Sbjct: 60 PYQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGR 119 Query: 110 -------------------NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 Y+ L +ESMV+ + ++LD+LLFY+FFEA LIPM+ Sbjct: 120 YPQRPAPPRLRSSGGERTRGVHAYVALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYF 179 Query: 151 IIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAI-----VVMCWEKKT---SSIIDLYAMS 201 +IG +G G+ R AA KF LY FG + ML A+ V ++ T I+ A Sbjct: 180 LIGGFGQGAGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAG 239 Query: 202 KFPFSIQYW--MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 ++ + +++ F +FAIK P++PFH WLP+A V++ A +V + +M K+G +G Sbjct: 240 RYGADPAVFKALFLGFMFAFAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGM 299 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +R+ L LFP S YF P+I L++I +IY ++V++ QTD+ +LIAY+SI+H G++ GIF Sbjct: 300 LRYCLQLFPDPSTYFRPLIVTLAIIGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIF 359 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 G G+ ML+HGL ++A+F G + R +R I YGG+ P A MV Sbjct: 360 VMTTQGQSGSTLYMLNHGLSTAAVFLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVS 419 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 MA + LPG + FI EFLV++ F A +VLSA+Y LWLY++V+ G E Sbjct: 420 AMATVSLPGLAPFISEFLVLLGTFSRYWLAAAFGVTALVLSAVYMLWLYQRVMTG-PIAE 478 Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 +++ DL RE +V P+ L + G+YP P+ D ++ +EN G D Sbjct: 479 GNERIGDLVGREMIVVAPLIALLLVLGVYPKPVLDI----INPAVENTMTTIGQHD 530 >gi|302521206|ref|ZP_07273548.1| NuoM [Streptomyces sp. SPB78] gi|318057831|ref|ZP_07976554.1| NADH:ubiquinone oxidoreductase subunit M [Streptomyces sp. SA3_actG] gi|318077147|ref|ZP_07984479.1| NADH:ubiquinone oxidoreductase subunit M [Streptomyces sp. SA3_actF] gi|302430101|gb|EFL01917.1| NuoM [Streptomyces sp. SPB78] Length = 523 Score = 282 bits (722), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 176/516 (34%), Positives = 288/516 (55%), Gaps = 29/516 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L++ +P +G +L ++ R + +AL S ++ V FD Sbjct: 1 MSFPLLTVTAAVPAVGA--VLTAAVPAARRTAAKWLALLFSLATLALAIAVLVRFDPDGG 58 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSW---KSIQENFREYMI 116 +Q+ E + WI D+ Y LGVDGI +L+ LT L PF +L+ W ++ N R + Sbjct: 59 RYQLTESHAWIADFGVRYELGVDGIGTVLIALTALLIPFVMLAGWHEPDGLETNSRRWRP 118 Query: 117 A------FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GSE 159 L++E+MV+ +F + D+ LFY+FFEA LIPM+ +IG +G ++ Sbjct: 119 TQGFFALILLVEAMVVLSFEATDVFLFYLFFEAMLIPMYFLIGGFGDRASGRDAQEEATQ 178 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS-----KFPFSIQYWMWIA 214 R YAA KF LY G + ML A++ + T S+ ++ A S + W+++ Sbjct: 179 RSYAAVKFLLYNLAGGLVMLAAVIGLYTVTHTFSLTEILAARADGSLSMATSTERWLFLG 238 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF +FA+K P++P HTWLPNA +A T +V + ++ K+G + +RF L LFP AS++ Sbjct: 239 FFFAFAVKAPLWPVHTWLPNAMGEASTPVAVLITAVVDKVGTFAMLRFCLQLFPEASKWA 298 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 PVI L++I+I+Y +L+++ Q DIK+LIAY+S++H G++ +GIF+ G GA M+ Sbjct: 299 TPVILVLAVISILYGALLAVGQRDIKRLIAYASLSHFGFIILGIFAMTSQGQSGATLYMV 358 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HG+ ++AL G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 359 NHGISTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFVS 418 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFLV++ F+ + ++A+ G+VL+ALY L LY++ + G K E V + DL RE + Sbjct: 419 EFLVLVGTFERHKALGIVATVGIVLAALYVLVLYQRTMTGPVKPE-VSAMGDLRARELVV 477 Query: 455 VYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 P+ VL V G+YP P+ D + + + + K Sbjct: 478 AVPLIVLLVVLGVYPKPVTDVINPAVKQTMSDVHEK 513 >gi|297563979|ref|YP_003682952.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848428|gb|ADH70446.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 555 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 170/441 (38%), Positives = 267/441 (60%), Gaps = 11/441 (2%) Query: 55 FDKGRS-SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWK---SIQE 109 FD R+ + Q E Y WI F SY +GVDGI++ LV+++ L P +L++W+ ++ Sbjct: 93 FDTSRAGALQFEEVYPWIPRFGVSYAVGVDGIALALVLMSAVLVPLVVLAAWREHDDRED 152 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFF 168 R Y LVLE+M+IG F + D+ LFY+FFEA LIP++ +IG +G G +R AA KF Sbjct: 153 GGRGYFALILVLEAMMIGVFAATDVFLFYVFFEAMLIPVYFMIGRYGRGDDRSRAAVKFL 212 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSIIDLY----AMSKFPFSIQYWMWIAFFCSFAIKIP 224 LY+ G + ML A++ + T DL A++ + W+++ FF +FAIK P Sbjct: 213 LYSLAGGLVMLVAVIGVYVVGGTFLWSDLVGEGSALAAVDPATARWLFLGFFIAFAIKAP 272 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 M+P HTWLP+A + +V L G++ K+G YG +R+ L LFP A +F + LSL+ Sbjct: 273 MWPVHTWLPSAAGASRPGTAVLLVGVLDKVGTYGMLRYCLELFPAAVSWFVWPVVALSLV 332 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +IIY +++++ Q D+ +L+AY+S++H G++T+GIF+ G GA M++HG + ALF Sbjct: 333 SIIYGAILAIGQNDMMRLVAYTSVSHFGFITLGIFALTAQGQAGAALYMVNHGFATGALF 392 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 VG + R + I YGG+ P+ A V +V +A + LPG + F+ EFLV + V+ Sbjct: 393 LVVGFLIARRGSALISDYGGVQRIAPKLAGVFLVTGLAGLALPGLAPFVSEFLVFVGVYA 452 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 S A++A+ GVVL+ALY LW+Y++ + G ++ E + L+DLS RE V P+ L + Sbjct: 453 FSPAPAIVAAVGVVLAALYILWMYQRTMNGPTR-EDLTGLRDLSARETWAVAPLLALILL 511 Query: 465 FGIYPVPIRDTFSVPLSSIIE 485 G+YP P+ D + + +E Sbjct: 512 LGLYPQPVLDVINPAVERTVE 532 >gi|289582892|ref|YP_003481358.1| proton-translocating NADH-quinone oxidoreductase, chain M [Natrialba magadii ATCC 43099] gi|289532445|gb|ADD06796.1| proton-translocating NADH-quinone oxidoreductase, chain M [Natrialba magadii ATCC 43099] Length = 509 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 172/464 (37%), Positives = 265/464 (57%), Gaps = 32/464 (6%) Query: 15 LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEY-----YH 69 +G FV + G+ +F IS I SL+++S FD ++ E + Sbjct: 12 VGAFVTFVAPNRIAGKLAF-----AISLIPAALSLWMFSAFDGSGNALLGGELAFASEFE 66 Query: 70 WI---DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI 126 WI +Y S+ +G+DGIS+ LVVLTT L+ I+SSW I E ++ L +E+ +I Sbjct: 67 WIQFGEYSISWLVGLDGISMPLVVLTTILSSLAIVSSWTPIDERESQFYGLVLFIEANLI 126 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 G F +LD +++IF+EA LIPM+++IG+WGG R YAA KFF+YT S+ M A + + Sbjct: 127 GVFAALDFFVWFIFWEAVLIPMYLLIGIWGGPRRKYAAIKFFVYTNVASLVMFGAFIALV 186 Query: 187 W---EKKTSSIIDLYA--MSKFP--------FSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 + + T ++ D+ A + P ++ +++A F FA+K+P+ PFHTWLP Sbjct: 187 FGLGDVTTFALPDVTAAMLDGGPDGFLGIGGTTLASLVFVAMFLGFAVKVPIVPFHTWLP 246 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS-QYFAPVIFFLSLIAIIYASLV 292 +AHV+APT SV LAG++LKMG Y +RF +FP + F I +++I++IY +++ Sbjct: 247 DAHVEAPTPASVLLAGVLLKMGTYALLRFNFTMFPAEIIEPFVIPIAAIAVISVIYGAML 306 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ QTD+K+++AYSS++ MGYV +G+ + + GV GA FQM+SHGL+S +F VGVIY+ Sbjct: 307 ALAQTDLKRIVAYSSVSSMGYVILGLIALTQFGVGGATFQMVSHGLISGLMFMAVGVIYN 366 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN-----SN 407 HTR + G+ MP +++ MGLP SGF GEF + F S Sbjct: 367 ATHTRMVTDMSGMADRMPVAVGILVAGAFGYMGLPLMSGFFGEFTIFFGAFGAEGLAYSQ 426 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 LA FG+V+ A Y L+ ++ VFG E + L + Sbjct: 427 VFTALAMFGIVIVAGYLLFALQRTVFGPYHLETDYDVDRAPLHD 470 >gi|72383352|ref|YP_292707.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. NATL2A] gi|123620503|sp|Q46HM4|NU4C_PROMT RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|72003202|gb|AAZ59004.1| NADH dehydrogenase subunit M [Prochlorococcus marinus str. NATL2A] Length = 538 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 175/506 (34%), Positives = 277/506 (54%), Gaps = 30/506 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 + P+LS+ F P +G ++ F G G+ + AL I+ I F+ ++ + FD + Sbjct: 10 HFPWLSLSIFFPIVGALIVPFIPDKGEGKEVRW-YALIIALITFLITVAAYFKGFDPSQE 68 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E W+ D ++ +G DG+S+ L++LT+F+T +L++W +++ + FL Sbjct: 69 GLQLYEKVSWLPDLGLTWSVGADGLSMPLILLTSFITSLAVLAAWPV---SYKPKLFFFL 125 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L + I F DMLLF++ +E L P+++ + +WGG +R YAA KF +YT S+F Sbjct: 126 ILAMDGGQIAVFAVQDMLLFFLAWELELFPVYLFLAIWGGKKRQYAATKFIIYTAGSSLF 185 Query: 178 MLFAIVVMCWEKKTSSIIDL----YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 +L A + M + + + D A F Q + +F +K+P+ P HTWLP Sbjct: 186 ILLAGLAMGFFQG-GGMPDFGYTHLAQQNFGKGFQLLCYSGLLIAFGVKLPIVPLHTWLP 244 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH +A + LAGI+LKMGGY +RF L P A FAP++ L ++ IIYA+L S Sbjct: 245 DAHGEATAPVHMLLAGILLKMGGYALLRFNAQLLPDAHAQFAPLLIVLGVVNIIYAALTS 304 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 Q ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR Sbjct: 305 FAQRNLKRKIAYSSISHMGFVLIGIGSFSSLGTSGAMLQMVSHGLIGASLFFLVGATYDR 364 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN------ 407 HT + GG+ NM + A++ LPG SGFI E +V + + Sbjct: 365 THTLQLDEMGGIGQNMRIMFALWTACAFASLALPGMSGFISELMVFVGFVTDEVYTLPFR 424 Query: 408 -TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRE----RCMVYPIAV 460 VA LA+ GV+L+ +Y L + R++ FG + + + K D RE C++ PI Sbjct: 425 IVVASLAAIGVILTPIYLLSMLREIFFGKENAKLISKAKLVDAEPREIYIIACLLVPI-- 482 Query: 461 LTVFFGIYPVPIRDTFSVPLSSIIEN 486 + G+YP + DT+ + +++ Sbjct: 483 --IGIGLYPKIMTDTYISSIDGLVKR 506 >gi|317123857|ref|YP_004097969.1| NADH dehydrogenase subunit M [Intrasporangium calvum DSM 43043] gi|315587945|gb|ADU47242.1| NADH dehydrogenase subunit M [Intrasporangium calvum DSM 43043] Length = 539 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 168/499 (33%), Positives = 286/499 (57%), Gaps = 36/499 (7%) Query: 2 NLPFLSIVTFLPFLGVFVILFS-SYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR- 59 ++P+L+I+ LP +G V+ F+ + +R +ALG S + + + +D Sbjct: 9 SIPWLTILVLLPLIGSLVVAFAPGTVETAKR----IALGTSLLTLVVGIAAALQYDSASP 64 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN-------- 110 FQ+ E WI F SY LGVDGI+++L+++ LTP C+L++W + E Sbjct: 65 KQFQLGEQVAWIPQFGVSYALGVDGIALVLILMALVLTPICLLAAWHDVPEESDAGGARR 124 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + Y L LE+ ++G F + D+ LFY+FFEA LIP++ +IG +GG R YAA KF L+ Sbjct: 125 VKAYFALILSLETFMVGVFAATDVFLFYVFFEAMLIPVYFLIGRFGGQRRQYAAMKFLLF 184 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMF 226 + G + ML A++ + + + I +L + P + + +++ FF +FA+K PM Sbjct: 185 SLAGGLIMLVAVIAVYLQGPGGADGFLISNLTGLELDP-TTERLLFVGFFIAFAVKAPMV 243 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P HTWLP+A +A A + L G++ K+G YG IRF L LFP AS++ PV+ L+++++ Sbjct: 244 PVHTWLPDAATEATPATATLLVGVLDKVGTYGMIRFCLQLFPGASEWATPVVIVLAVVSV 303 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 +Y +L+++ QTD+ +LI+Y+S++H G++ +GIF+ G G+ ML+HG ++ALF Sbjct: 304 LYGALLAIGQTDMMRLISYTSVSHFGFIVLGIFAFTNVGGAGSSLYMLNHGFSTAALFLF 363 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 ++ R ++ I YGG P A + +V +++ + LPG + F+ EFLV + F Sbjct: 364 AAMLIRRGGSKRIADYGGWQRVTPGLAGIFLVASLSGLALPGLASFVSEFLVYVGTFPTQ 423 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFG----------VSKCEKVQQ------LKDLSLR 450 AVLA+ G++L+ALY L +Y++V+ G + E+ ++ + DL+LR Sbjct: 424 PVAAVLATAGIILAALYMLLMYKRVMTGPKPESLAVDPAAVDERWRRSSGGTVIADLTLR 483 Query: 451 ERCMVYPIAVLTVFFGIYP 469 E+ + P+ + G YP Sbjct: 484 EKLVAAPLIAAFLVLGFYP 502 >gi|302553438|ref|ZP_07305780.1| NADH dehydrogenase subunit M [Streptomyces viridochromogenes DSM 40736] gi|302471056|gb|EFL34149.1| NADH dehydrogenase subunit M [Streptomyces viridochromogenes DSM 40736] Length = 523 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 175/498 (35%), Positives = 278/498 (55%), Gaps = 29/498 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+ LP +G R + +AL S + ++ V FD Sbjct: 1 MSFPLLTATAALPAVGAIATAAVPA--AKRTAAKWLALLFSLATLVLAITVLVRFDPDGD 58 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ------ENFRE 113 +Q+ E + WI D+ Y LGVDGI + L+ LT L PF IL+ W + +R Sbjct: 59 RYQLTESHAWIADFGVRYELGVDGIGVALIALTALLIPFIILAGWHDADPLETGSKRWRP 118 Query: 114 ---YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GSE 159 + L +E+MVI +F + D+ LFYIFFEA LIPM+ +IG +G ++ Sbjct: 119 TQGFFALILAVEAMVIISFEATDVFLFYIFFEAMLIPMYFLIGGFGDHAHEHGEKAAATQ 178 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS-----KFPFSIQYWMWIA 214 R YAA KF LY G + ML A++ + + S+ ++ A S + W+++ Sbjct: 179 RSYAAVKFLLYNLVGGLIMLAAVIGLYVVAGSFSLTEIAAARASGSLDMATSTERWLFLG 238 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF +FA+K P++P HTWLPNA ++ +V + ++ K+G + +RF L LFP AS++ Sbjct: 239 FFFAFAVKAPLWPLHTWLPNAMQESTAPVAVLITAVVDKVGTFAMLRFCLQLFPEASKWA 298 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P I L+LI+IIY +L+++ Q DIK+L+AY+SI+H G++ +GIF+ G GA M+ Sbjct: 299 TPAILVLALISIIYGALLAVGQRDIKRLVAYASISHFGFIIMGIFAMTSQGQSGATLYMV 358 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HG+ ++AL G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 359 NHGISTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFVS 418 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFLV++ F + ++A+FG+VL+ALY+L LY++ + G K V ++ DL +RE + Sbjct: 419 EFLVLVGTFTRYPVIGIIATFGIVLAALYTLVLYQRTMTGPVK-PAVAKMPDLRVRELVV 477 Query: 455 VYPIAVLTVFFGIYPVPI 472 V P+ VL +F G+YP P+ Sbjct: 478 VAPLVVLLIFLGVYPKPV 495 >gi|158284365|ref|XP_001687790.1| Anopheles gambiae str. PEST AGAP012727-PA [Anopheles gambiae str. PEST] gi|157021104|gb|EDO64859.1| AGAP012727-PA [Anopheles gambiae str. PEST] Length = 458 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 151/411 (36%), Positives = 251/411 (61%), Gaps = 12/411 (2%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDM 134 S HLGVDG+S+L ++LTT LT ILSS+ + + L+++ +IG F SLD Sbjct: 48 TSLHLGVDGLSMLFILLTTILTSLIILSSFSQTVKYKNTFYGLILLMQFGLIGVFTSLDG 107 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FY F+E +LIP++ I G+WG +++ KFF+YTF GS+FML ++ + + + Sbjct: 108 LMFYAFWEVTLIPIWFICGLWGQEDQKLRFTTKFFVYTFIGSLFMLGGLIYVYNHSASFA 167 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++D+Y S + Q ++ F +FA+K+P+FPFHTW P+ + +PT G++ L+GIMLK Sbjct: 168 LLDMYN-SDLNVTQQTIVFWFIFVAFAVKLPVFPFHTWQPDTYTYSPTEGTMLLSGIMLK 226 Query: 254 MGGYGCIRFLLPLFPLASQYFA-PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 M +G +R+LLP+ P A + ++ L++I I+Y +L+++V+ DIK++I YSS++H+G Sbjct: 227 MAIFGVLRYLLPIAPGAIMGISGQIVLTLAIIGIVYGALIAIVKNDIKRIITYSSLSHIG 286 Query: 313 YVTIGIFSG---------MKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 + GIF+ G EGA+ Q +HG+ LF+C ++Y R TRDI G Sbjct: 287 LIVAGIFASAILTLNGRFTTEGAEGAVIQAFAHGINIVGLFYCADILYRRFKTRDIRQMG 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL P++AV+ ++ +M +P T+GFIGEF+++ S+ + T +++ V+L A+Y Sbjct: 347 GLAKVAPKFAVLFLIIVFGSMAVPLTNGFIGEFILLKSISDYNTTAVIISGLTVILCAVY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 L +Y K +FG + +KD+S E ++ + V + FGI+P I + Sbjct: 407 MLRMYGKAMFGKGDEVLLANMKDVSGVEFSVLASLVVFVILFGIFPNSILE 457 >gi|256831791|ref|YP_003160518.1| proton-translocating NADH-quinone oxidoreductase, chain M [Jonesia denitrificans DSM 20603] gi|256685322|gb|ACV08215.1| proton-translocating NADH-quinone oxidoreductase, chain M [Jonesia denitrificans DSM 20603] Length = 507 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 170/486 (34%), Positives = 278/486 (57%), Gaps = 23/486 (4%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 +LP ++I +P + V+ L + + R +AL S + + + + FD +S Sbjct: 5 SLPLITITAAIPLVAAVVLWLLPATVARVARP---IALTASLVTLGAGVVMVASFDTSQS 61 Query: 61 -SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKS-------IQENF 111 + Q +E Y WI+ SY +GVDG+ + LV+L+ L P IL++WK Sbjct: 62 ATHQFVETYRWIEPIGASYAVGVDGVGLALVILSVLLVPLVILAAWKEHGGVTVGSGSRL 121 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLY 170 R Y+ LVLE+M++ F + D+ LFY+ FEA LIP++ +IG++G G+ R YAA KF L+ Sbjct: 122 RHYLALILVLETMMVLIFAARDVFLFYVVFEAMLIPVYFMIGLFGHGARRRYAAIKFLLF 181 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMF 226 + G + ML A++ + + I L + P +++ W+++ FF FAIK PMF Sbjct: 182 SLVGGLIMLIAMIALFITGPGGAEGFLISSLTGAVENP-TLEKWIFLGFFIPFAIKAPMF 240 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P HTWLP+ AP SV L G++ K+G +G + LPLFP ASQ+ AP I L+LI+I Sbjct: 241 PVHTWLPDTAQHAPAGTSVLLVGVLDKVGTFGMLTLCLPLFPNASQWAAPTIIILALISI 300 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 IY +L+++ Q D+ +LIAY+S++H G++ +GIF+ +G+ G+ F M++HGL + +F Sbjct: 301 IYGALLALGQRDLMRLIAYTSVSHFGFIVLGIFTFSSAGISGSAFYMVNHGLSTGLMFLV 360 Query: 347 VGVIYDRLHT---RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 G ++ R + + I YGG+ P A V +V ++ + +PG S FI E V+++ F Sbjct: 361 AGFLFLRSRSVTPQHIAEYGGMQRVTPVLAGVFLVAGLSALSMPGLSTFISEITVLIAAF 420 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 S VA +A+ GV+L+ALY L Y+++ G + DL++RE+ + P+ + + Sbjct: 421 DTSPWVAAIAALGVILAALYILLTYQRIFTGPPPANT-EPTADLTVREKVVAAPLIAVML 479 Query: 464 FFGIYP 469 G P Sbjct: 480 LLGFLP 485 >gi|302536180|ref|ZP_07288522.1| NADH dehydrogenase subunit M [Streptomyces sp. C] gi|302445075|gb|EFL16891.1| NADH dehydrogenase subunit M [Streptomyces sp. C] Length = 528 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 171/496 (34%), Positives = 276/496 (55%), Gaps = 31/496 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M+ P L++ +P G + ++ + RR+ +AL S ++ V F+ G Sbjct: 1 MSFPLLTLTAAVPAAGA---ILTAAVPAARRTVAKWLALLFSLATLALAVLVAVRFEPGG 57 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---------E 109 +Q+ E + WI D+ Y LGVDGI + L+ LT L PF I++ W Sbjct: 58 DRYQLTESHAWIADFGVRYELGVDGIGVALIALTALLIPFVIVAGWHDADPLETQSSRWR 117 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GS 158 + + L++E+MV+ +F + D+ LFYIFFEA LIPM+ +IG +G + Sbjct: 118 PTQGFFALILLVEAMVVISFEATDVFLFYIFFEAMLIPMYFLIGGFGDRAHAGTDENAAA 177 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPFSI--QYWMWI 213 +R YAA KF LY G + ML A++ V+ I + A + + +++ Sbjct: 178 QRSYAAVKFLLYNLVGGLIMLAAVIGLYVVAGNFSLQEIAEARAAGTLDMATNTERLLFL 237 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K P++P HTWLPNA ++ +V + I+ K+G + +RF L LFP AS++ Sbjct: 238 GFFFAFAVKAPLWPLHTWLPNAMGESTAPVAVLITAIVDKVGTFAMLRFCLGLFPEASKW 297 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 PVI L+LI+I+Y +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G GA M Sbjct: 298 ATPVILVLALISIVYGALLAVGQRDIKRLIAYASISHFGFIILGIFAMTSQGQSGATLYM 357 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG+ ++AL G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 358 VNHGISTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFV 417 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFLV++ F V ++A+ G+VL+ALY+L LY++ + G K E+V+ + DL RE Sbjct: 418 SEFLVLVGTFARYPVVGIIATVGIVLAALYTLVLYQRTMTGPVK-EEVRSMPDLRARELL 476 Query: 454 MVYPIAVLTVFFGIYP 469 +V P+ L + G+YP Sbjct: 477 VVAPLIALLIGLGVYP 492 >gi|307822813|ref|ZP_07653044.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacter tundripaludum SV96] gi|307736417|gb|EFO07263.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacter tundripaludum SV96] Length = 490 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 159/429 (37%), Positives = 262/429 (61%), Gaps = 14/429 (3%) Query: 67 YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 Y WI F S+HL +DG+S+LL+ LT L + SSW I++ + L + Sbjct: 61 YGPWIPRFGISFHLAMDGLSLLLITLTVLLGFMAVSSSWTEIKDRQGFFFFNLLACLAGT 120 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM 185 +G FL++D+ LF+ F+E + PM+ +I +WG R AA KFF++T S+ ML AI+ + Sbjct: 121 VGVFLAVDLFLFFFFWELMITPMYFLISIWGHENRTDAAIKFFIFTQVSSLLMLLAIITL 180 Query: 186 CWEKKTSSIIDLYAMSKFPF-------SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 S+ +Y+ F + +W+ + FF +F +K+PM PFHTWLP+AH Q Sbjct: 181 VLLHYNST--GIYSFDYFELLNTVLEPHVAFWLMLGFFIAFTVKLPMVPFHTWLPDAHTQ 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV LAG+MLK G YG +RF++PLFP A+ FAP+ L ++++YA++++ Q+D Sbjct: 239 APTGGSVILAGVMLKTGAYGLLRFVIPLFPDAAHQFAPIAMTLGAVSVLYAAMMAFAQSD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+LIAY+S++HMG++ +G+FS ++G++ ML+HG+ +SALF G + +RLHTR+ Sbjct: 299 LKRLIAYTSVSHMGFILLGVFSWNLLALQGSVITMLAHGISASALFMIAGALQERLHTRE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL +PR + + + F +A++GLPG F+GEFLV+ F + + +A+ ++ Sbjct: 359 MGNMGGLWPALPRLSALTLFFAVASLGLPGLGNFMGEFLVLQGAFSVNMLLVSVAALVLI 418 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 L+ +Y+L + +K +G + L D+ RE + + + +V+ G+ P + D SV Sbjct: 419 LAPVYALIMIQKAFYG--PPSQHSPLSDVGRREWASLGLLVLASVWLGLSPQAVLDV-SV 475 Query: 479 P-LSSIIEN 486 P L ++N Sbjct: 476 PVLKQEMQN 484 >gi|304281801|gb|ADM21132.1| NdhD4 [Arthrospira platensis AGB-AP02] Length = 505 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 171/476 (35%), Positives = 262/476 (55%), Gaps = 18/476 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLG--CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS++ ++P L +I+ L R+ A G+ ++SL + +FD + Q Sbjct: 2 LSVLIWIPLLAALLIVLWPNLSPQLSRQISLLTAGGL----LVWSLILARLFDPTVADLQ 57 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 M+E+ WI +Y+LGVDG+S+ LV++ L I SS I R Y L++ Sbjct: 58 MVEHITWIQPLGLNYYLGVDGLSLPLVIINALLVAIAIWSSDLDISRP-RLYYPLLLIIF 116 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + V G FLS ++LLF +F+E LIP++++I +WGG R YAA KF LYT + +L A Sbjct: 117 AGVAGTFLSSNLLLFILFYEVELIPLYLLIAIWGGKNRGYAATKFLLYTAVSGLLILAAF 176 Query: 183 VVMCWEKKTSS------IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + + W K I +S P + Q + F IKIP+ PFHTWLP+AH Sbjct: 177 LGIVWLTKAPDFDLDTLITSTLGVSALPLTTQLILLGGLVIGFGIKIPVVPFHTWLPDAH 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+A T SV LAG++LK+G YG +RF + LFP A AP + ++++++Y + ++ Q Sbjct: 237 VEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPDAWNAIAPYVASWAVVSVLYGASCAISQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 DIKK++AYSSIAHMGY+ + + + G++ QM+SHGL+S+ LF VGV+Y + + Sbjct: 297 KDIKKMVAYSSIAHMGYIILAFAAASPISLLGSVMQMVSHGLISALLFLTVGVVYKKSGS 356 Query: 357 RDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 RDI GL++ +P +M+V MA+ G+PG GF+ EFLV + +L Sbjct: 357 RDIDVIRGLLNPERGLPLIGSIMIVAVMASAGIPGLVGFVSEFLVFRGSMEVFPVQTLLC 416 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G L+++Y L + + FG E V L + R+R +AV+ F GI P Sbjct: 417 MVGTGLTSVYFLIMINRAFFG-RLSESVINLPRVQWRDRIPAIALAVIITFLGIQP 471 >gi|226306202|ref|YP_002766162.1| NADH-quinone oxidoreductase chain M [Rhodococcus erythropolis PR4] gi|226185319|dbj|BAH33423.1| NADH-quinone oxidoreductase chain M [Rhodococcus erythropolis PR4] Length = 534 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 178/506 (35%), Positives = 288/506 (56%), Gaps = 31/506 (6%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSF---FGVALGISTINFIFSLFVWSVFDKGRS 60 P L+ + LP +G V+L RS+ +AL +S + + + FD+G Sbjct: 17 PALTALWLLPLIGAGVVL-----ALPARSYQFAKSLALAVSVAVLVIAGGLGVAFDRGGG 71 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF-------R 112 FQ +E + WI F SY LG+DGI+++LV+LT L P +++ W + + Sbjct: 72 QFQFVESHSWIPAFGTSYTLGLDGIALVLVLLTAVLVPLLLIAGWNDVPADPASPKRMPH 131 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF 172 Y LV+ESMV+ +F +LD+LLFYIFFEA LIPM+ +IG +GG R AA KF LY Sbjct: 132 TYFALILVVESMVMISFSALDILLFYIFFEAMLIPMYFLIGGFGGVGRSRAAVKFLLYNL 191 Query: 173 FGSIFMLFAI----VVMCWEKK--TSSIIDLYAMSKFPFS--------IQYWMWIAFFCS 218 G + ML A+ VV ++ TS D A++ S + +++ F + Sbjct: 192 LGGLVMLAAVIGLYVVTTRDESPFTSGTFDFRAIASAASSGELGVGPGVLNALFLGFMFA 251 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 FA+K P++P H+WLP++ V++ + +V + ++ K+G + IR+ L LFP +S FAP I Sbjct: 252 FAVKAPLWPLHSWLPDSAVESTPSTAVLMMAVVDKVGTFAMIRYCLQLFPESSSTFAPWI 311 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 L++I I+Y +++++ QTD+ +LIAY+SI+H G++ +GIF+ G+ M++HG+ Sbjct: 312 ITLAVIGIVYGAILAIAQTDVMRLIAYTSISHFGFIILGIFAMTSQSQAGSALYMVNHGI 371 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 ++ALF G + + TR I AYGG+ P A +V +A + LPG + F+ EFLV Sbjct: 372 STAALFLIAGFLVSQRGTRSIAAYGGVQKVAPVLAGTFLVAGLATLSLPGLAPFVSEFLV 431 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 ++ + + A+ A+ +VLSA+Y LWLY++++ G K E ++DL+ RE +V P+ Sbjct: 432 LIGTYSRYHVAAIAATVALVLSAIYILWLYQRMMGGPVK-EGQGTIRDLARRELVVVAPL 490 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSII 484 L + GIYP P D + +S + Sbjct: 491 IALLLLLGIYPKPALDVITPAVSHTV 516 >gi|123967704|ref|YP_001008562.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. AS9601] gi|193806232|sp|A2BNU4|NU4C_PROMS RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|123197814|gb|ABM69455.1| putative NADH dehydrogenase subunit (chain 4) [Prochlorococcus marinus str. AS9601] Length = 534 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 169/502 (33%), Positives = 280/502 (55%), Gaps = 23/502 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 N P+LS P FVI F G G+ + AL I+ I F+ ++ + + FD Sbjct: 11 NFPWLSASILFPIGSAFVIPFFPDKGDGKEVRW-FALSIALITFLITVGSYINGFDISNE 69 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q+ E W+ D ++ +G DG+S+ L++LT+F+T +L++W ++ + + L Sbjct: 70 NVQLKENISWLPDLGLTWSVGADGMSMPLILLTSFITALAVLAAWP-VKFKPKLFFFLIL 128 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++ I F DMLLF++ +E LIP+++++ +WGG R YAA KF +YT SIF+L Sbjct: 129 VMDGGQIAVFAVQDMLLFFLTWELELIPVYLLLAIWGGKNRQYAATKFIIYTAGSSIFIL 188 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM--WIAFFCSFAIKIPMFPFHTWLPNAHV 237 A + M + + ++ FS ++ + ++ +F +K+P+ P HTWLP+AH Sbjct: 189 LAALAMGFYGTEIPNFEFSHLAAQDFSQKFQILCYVGLLIAFGVKLPIVPLHTWLPDAHG 248 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +RF L P+A FAP++ L ++ IIYA+L S Q Sbjct: 249 EATAPVHMLLAGILLKMGGYALLRFNAQLLPVAHAQFAPLLIVLGVVNIIYAALTSFAQR 308 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR T Sbjct: 309 NLKRKIAYSSISHMGFVLIGIGSFSSLGTSGAMLQMVSHGLIGASLFFLVGATYDRTKTL 368 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NTVA 410 + G+ M + ++A++ LPG SGF+ E +V + +A Sbjct: 369 KLDEMSGVGQKMRIMFALWTACSLASLALPGMSGFVSELMVFTGFVTDEVYTLPFRVVMA 428 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRE----RCMVYPIAVLTVF 464 LA+ GV+L+ +Y L + R++ FG + +++ K D RE C++ PI + Sbjct: 429 SLAAIGVILTPIYLLSMLREIFFGKENPKLIEERKLIDAEPREVYIIACLLLPI----IG 484 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G+YP + +++ ++++++ Sbjct: 485 IGLYPRLVTESYIASINNLVDR 506 >gi|119486278|ref|ZP_01620337.1| NADH dehydrogenase subunit 4 [Lyngbya sp. PCC 8106] gi|119456491|gb|EAW37621.1| NADH dehydrogenase subunit 4 [Lyngbya sp. PCC 8106] Length = 530 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 169/504 (33%), Positives = 279/504 (55%), Gaps = 30/504 (5%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRSSF 62 P+L+ P + ++ F R+ AL I I+F ++ + + +D + Sbjct: 7 PWLTTTILFPIVAALLLPFIP--DKDGRTVRWYALVIGLIDFAIIVYAFCTQYDFNKPGL 64 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI ++ +G DG+++ L++LT F+T IL++W F+ + FL+L Sbjct: 65 QLFESYAWIPQLDLNWSVGADGLAMPLILLTGFITTLAILAAWPV---TFKPKLFYFLML 121 Query: 122 E--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 I F DMLLF++ +E L+P+++I+ +WGG +R YAA KF LYT GS+F+L Sbjct: 122 AMYGGQIAVFAVQDMLLFFLAWELELVPVYMILAIWGGKKRQYAATKFILYTAGGSLFIL 181 Query: 180 FAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + M + T + + A FP ++ ++ F ++ +K+P+FP HTWLP+AH + Sbjct: 182 VGALTMAFYGDTVTFDMSAIAAKDFPIKLELLLYSGFLIAYGVKLPIFPLHTWLPDAHGE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + LAGI+LKMGGY +R + + P A FAP++ L ++ IIYA+L S Q + Sbjct: 242 ATAPAHMLLAGILLKMGGYALLRMNVGMLPDAHATFAPILIILGVVNIIYAALTSFAQRN 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ IAYSSI+HMG+V IG+ S + G+ GA+ QM+SHGL+ ++LFF VG YDR HT Sbjct: 302 LKRKIAYSSISHMGFVLIGMASFTEIGLSGAVLQMISHGLIGASLFFLVGCTYDRTHTLM 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ M + + MA++ LPG SGF+ E ++ + + + V Sbjct: 362 LDEMGGVGSKMKKVFAMWTTCAMASLALPGMSGFVAELMIFIGISTSDAYSPTFKVLVVF 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSK--CEKVQQLKDLSLRE----RCMVYPIAVLTVFF 465 LA+ GV+L+ +Y L + R++++G ++L D RE C++ PI + Sbjct: 422 LAAVGVILTPIYLLSMLRELLYGPENKALTSHEKLVDAEPREVFVITCLLIPI----IGI 477 Query: 466 GIYP---VPIRDTFSVPLSSIIEN 486 G+YP I D+ + L+++I Sbjct: 478 GLYPKIVTQIYDSTTTQLTALIRQ 501 >gi|187764062|ref|YP_001876511.1| NADH dehydrogenase subunit 4 [Dictyostelium fasciculatum] gi|160688770|gb|ABX45185.1| NADH dehydrogenase subunit 4 [Dictyostelium fasciculatum] Length = 535 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 159/384 (41%), Positives = 239/384 (62%), Gaps = 16/384 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIF 140 +DGI I+ + LTT L C+L SW ++E + YMI ++E ++I F +D++ FYI Sbjct: 120 IDGIGIIFIWLTTLLIVSCVLISWTVVKEEVKMYMILLFIIEILLINLFGVIDLIHFYII 179 Query: 141 FEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--IID- 196 +E+ LIP+ ++I +WG E+ AAY+ F+YT GSIFML AI + + T+ II Sbjct: 180 YESILIPIVIMISIWGSREEKKIAAYQIFVYTLIGSIFMLSAIGYIYYMFGTTDYFIIKE 239 Query: 197 -LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 ++ +S Q ++I F FA+KIPM P H WL AHV+APTAGSV LAGI+LKMG Sbjct: 240 GIWTLSDIE---QKLLFIGLFIGFAVKIPMVPLHLWLLRAHVEAPTAGSVLLAGILLKMG 296 Query: 256 GYGCIRFLLPLFPLAS-QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GYG +RF + LF +F P I + +I+I+Y + +++Q DIKK+IAYSSI+HM V Sbjct: 297 GYGFLRFNVGLFSSNILDFFFPYITVICIISILYTGIATILQLDIKKIIAYSSISHMNVV 356 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +GIFS G+EG++F M+SHG VS +LF C+G+IY++ +R +++Y L MP YA+ Sbjct: 357 VLGIFSQNIQGIEGSVFLMVSHGFVSGSLFLCIGMIYEQTKSRMLYSYNNLAVVMPNYAI 416 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + + T+AN+ P TS FIGE L+ + V + + A G++++ YS WLY ++ F Sbjct: 417 IFFLLTLANIAFPITSSFIGELLIFVGVMKANIIAAFFGGMGMIITVFYSFWLYNRLFFD 476 Query: 435 -------VSKCEKVQQLKDLSLRE 451 V K + +D++ RE Sbjct: 477 NGMLDEQVKFLNKKGKFRDINERE 500 >gi|126695507|ref|YP_001090393.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9301] gi|193806227|sp|A3PAL7|NU4C_PROM0 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|126542550|gb|ABO16792.1| putative NADH dehydrogenase subunit (chain 4) [Prochlorococcus marinus str. MIT 9301] Length = 531 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 170/502 (33%), Positives = 277/502 (55%), Gaps = 23/502 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 N P+LS P FVI F G G+ + AL I+ I F+ ++ + + FD Sbjct: 8 NFPWLSASILFPIGSAFVIPFFPDKGDGKEVRW-FALSIALITFLITVGSYINGFDINNE 66 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q+ E W+ D ++ +G DG+S+ L++LT+F+T +L++W ++ + + L Sbjct: 67 NVQLKENISWLPDLGLTWSVGADGMSMPLILLTSFITALAVLAAWP-VKFKPKLFFFLIL 125 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++ I F DMLLF++ +E LIP+++++ +WGG R YAA KF +YT SIF+L Sbjct: 126 VMDGGQIAVFAVQDMLLFFLTWELELIPVYLLLAIWGGKNRQYAATKFIIYTAGSSIFIL 185 Query: 180 FAIVVMCWEKKTSSIIDL--YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A + M + + A F Q + ++ +F +K+P+ P HTWLP+AH Sbjct: 186 LAALAMGFYGTEIPNFEFSHLAAQDFNQKFQIFCYVGLLIAFGVKLPIVPLHTWLPDAHG 245 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +RF L P+A FAP++ L ++ IIYA+L S Q Sbjct: 246 EATAPVHMLLAGILLKMGGYALLRFNAQLLPVAHAQFAPLLIVLGVVNIIYAALTSFAQR 305 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR T Sbjct: 306 NLKRKIAYSSISHMGFVLIGIGSFSSLGTSGAMLQMVSHGLIGASLFFLVGATYDRTKTL 365 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NTVA 410 + G+ M + ++A++ LPG SGF+ E +V + +A Sbjct: 366 KLDEMSGVGQKMRIMFALWTACSLASLALPGMSGFVSELMVFTGFVTDEVYTLPFRVVMA 425 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRE----RCMVYPIAVLTVF 464 LA+ GV+L+ +Y L + R++ FG + +++ K D RE C++ PI + Sbjct: 426 SLAAIGVILTPIYLLSMLREIFFGKENPKLIEERKLIDAEPREVYIIACLLLPI----IG 481 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G+YP + +++ ++++++ Sbjct: 482 IGLYPRLVTESYIASINNLVDR 503 >gi|124024935|ref|YP_001014051.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. NATL1A] gi|193806228|sp|A2BZX6|NU4C_PROM1 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|123960003|gb|ABM74786.1| putative NADH dehydrogenase subunit (chain 4) [Prochlorococcus marinus str. NATL1A] Length = 538 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 175/506 (34%), Positives = 275/506 (54%), Gaps = 30/506 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 + P+LS+ P +G ++ F G G+ + AL IS I F+ ++ + FD Sbjct: 10 DFPWLSLSILFPIVGALIVPFIPDKGEGKEVRW-YALIISLITFLITVAAYFKGFDPSLE 68 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E W+ D ++ +G DG+S+ L++LT+F+T +L++W +++ + FL Sbjct: 69 GLQLYEKVSWLPDLGLTWSVGADGLSMPLILLTSFITSLAVLAAWPV---SYKPKLFFFL 125 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L + I F DMLLF++ +E L P+++ + +WGG +R YAA KF +YT S+F Sbjct: 126 ILAMDGGQIAVFAVQDMLLFFLAWELELFPVYLFLAIWGGKKRQYAATKFIIYTAGSSLF 185 Query: 178 MLFAIVVMCWEKKTSSIIDL----YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 +L A + M + + + D A F Q + +F +K+P+ P HTWLP Sbjct: 186 ILLAGLAMGFFQG-GGVPDFGYTHLAQQNFGRGFQLLCYSGLLIAFGVKLPIVPLHTWLP 244 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH +A + LAGI+LKMGGY +RF L P A FAP++ L ++ IIYA+L S Sbjct: 245 DAHGEATAPVHMLLAGILLKMGGYALLRFNAQLLPDAHAQFAPLLIVLGVVNIIYAALTS 304 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 Q ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR Sbjct: 305 FAQRNLKRKIAYSSISHMGFVLIGIGSFSSLGTSGAMLQMVSHGLIGASLFFLVGATYDR 364 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN------ 407 HT + GG+ NM + A++ LPG SGFI E +V + + Sbjct: 365 THTLQLDEMGGIGQNMRIMFALWTACAFASLALPGMSGFISELMVFVGFVTDEVYTLPFR 424 Query: 408 -TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRE----RCMVYPIAV 460 VA LA+ GV+L+ +Y L + R++ FG + + + K D RE C++ PI Sbjct: 425 IVVASLAAIGVILTPIYLLSMLREIFFGKENAKLISKAKLVDAEPREIYIIACLLVPI-- 482 Query: 461 LTVFFGIYPVPIRDTFSVPLSSIIEN 486 + G+YP + DT+ + +++ Sbjct: 483 --IGIGLYPKIMTDTYISSIDGLVKR 506 >gi|313903486|ref|ZP_07836877.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermaerobacter subterraneus DSM 13965] gi|313466307|gb|EFR61830.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermaerobacter subterraneus DSM 13965] Length = 516 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 182/517 (35%), Positives = 276/517 (53%), Gaps = 40/517 (7%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLF----VWSVFDK 57 +LP+LS++ +P G + L R + + L + T+ L VW+ FD Sbjct: 4 SLPYLSLILGVPAAGALLTLL-----IPRENHRAIRL-VGTVALAVPLLLVAAVWAGFDP 57 Query: 58 GRSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 Q +E Y WI + Y+LGVDG+S+ LV LT + P L+SW I++ +EY + Sbjct: 58 AAGGPQFVERYRWIPTLGAWYYLGVDGLSLPLVALTALVAPLAALASW-GIEQRVKEYWV 116 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 +L + + G FL+LD LLFY+FFE SLIPM+ +IG+WGG R YA+ KFF+YT GSI Sbjct: 117 LLGILVTGIFGVFLALDYLLFYVFFELSLIPMYFLIGIWGGPRRDYASLKFFIYTLVGSI 176 Query: 177 FMLFAIVVMCWEKKTSS--IIDL--YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 ++ I+ + + S+ +++L A + P +++ +++ F FAIK PM+P HTWL Sbjct: 177 VLIVGILGLYFLTGASTFDMVELARRAPAAVPQALKLPLFLLLFAGFAIKTPMWPVHTWL 236 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHV+APT SV LA ++LKMG YG +R P P ++ A + L++IAI+Y + Sbjct: 237 PDAHVEAPTPISVILAAVLLKMGTYGMMRITWPTLPDVARDLAGTLAVLAVIAILYGAFT 296 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIG-----------------------IFSGMKSGVEGA 329 ++ Q D K+L+AYSS++ MG+V + + +S A Sbjct: 297 ALGQRDFKRLVAYSSVSQMGFVVLALAAAAAAPAAAEAAQLAGRDPQVVLQAGQSATMAA 356 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F M++HGL S+ LF VG YDR HTRD GG+ P A + + AN+GLPG Sbjct: 357 VFMMVAHGLASALLFLLVGFWYDRTHTRDFDRLGGMFRTTPVAATFLGIAAFANLGLPGF 416 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 S FIGEF +M +A G+V A+Y+L + ++V G K E L D+S Sbjct: 417 STFIGEFFTLMGTLPVFPVAVYVALIGLVGGAMYNLTMLQRVAMGGPKPEW-HGLPDVSA 475 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 RE P+ + G P + S P++ + Sbjct: 476 RELATFVPLVAAMLLLGWMPGLLTQVLSTPVAQFVAK 512 >gi|53805248|ref|YP_113030.1| NADH ubiquinone/plastoquinone complex subunit [Methylococcus capsulatus str. Bath] gi|53759009|gb|AAU93300.1| putative NADH ubiquinone/plastoquinone complex subunit [Methylococcus capsulatus str. Bath] Length = 488 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 176/477 (36%), Positives = 270/477 (56%), Gaps = 18/477 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + + P G V+ F R +ALG S + + +LFV F+ Q Sbjct: 4 LSCLLWTPLAGALVLAFLPR--HWHRHACSIALGFSGLCLLLTLFVTIRFETNSPDVQFS 61 Query: 66 EYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E W S Y LGVDG S+ LV+L+ FL +L+ + R Y IAFL LE Sbjct: 62 EMLPWNPGMGSFYALGVDGFSLPLVLLSAFLCLVALLAGLGGPRP--RGYYIAFLSLEFG 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV- 183 ++G FLS D LFY+F+E +LIP+F +I WGG R AA F LYT GS+FML A++ Sbjct: 120 MLGVFLSRDWALFYVFWELTLIPLFFLIDQWGGKRRHGAALNFVLYTMGGSVFMLIALLM 179 Query: 184 VMCWEKKTSSIID-LYAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 V + S+++D + +++ P Q +++ F +K+P+FP H WLP AHV+AP+ Sbjct: 180 VYAASTEHSTLMDSMQGVARGLPRGSQVLIFLGLLTGFGVKMPVFPLHGWLPLAHVEAPS 239 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 S+ L+G +LKMG YG IR + P A P + ++L+ I+Y +L++ Q+D+K Sbjct: 240 PISILLSGALLKMGAYGLIR-ACAMLPEAVVVMQPWLAAIALVGIVYGALLAWRQSDLKA 298 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 +IAYSS++HMG+V +G+ + G+ GA+ QM +HGLV+ ALF +G++Y+R HTR++ Sbjct: 299 MIAYSSVSHMGFVLVGLAAMNPVGLIGAVMQMTAHGLVAGALFLLIGLLYERTHTRELAD 358 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 YG L PR A ++ +A+MGLPG+ GF+ E ++ FQ+ ++ASFGV++ Sbjct: 359 YGALGRTAPRLAAFTVLALLASMGLPGSVGFVAELHAMIGGFQHFGAWMLVASFGVLVGG 418 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRE----RCMVYPIAVLTVFFGIYPVPIRD 474 Y+L +V G +K + L+DL E C+V I V+ G+ P + + Sbjct: 419 AYALRCVAALVAGPAK-PAMSGLEDLRPAEFAGASCLVAAI----VWLGLAPAALLE 470 >gi|333025107|ref|ZP_08453171.1| putative NADH dehydrogenase subunit M [Streptomyces sp. Tu6071] gi|332744959|gb|EGJ75400.1| putative NADH dehydrogenase subunit M [Streptomyces sp. Tu6071] Length = 523 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 177/516 (34%), Positives = 288/516 (55%), Gaps = 29/516 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L++ +P +G +L ++ R + +AL S ++ V FD Sbjct: 1 MSFPLLTMTAAVPAVGA--VLTAAVPAARRTAAKWLALLFSLATLALAIAVLVRFDPDGG 58 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSW---KSIQENFREYMI 116 +Q+ E + WI D+ Y LGVDGI +L+ LT L PF +L+ W ++ N R + Sbjct: 59 RYQLTESHAWIADFGVRYELGVDGIGTVLIALTALLIPFVMLAGWHEPDGLETNSRRWRP 118 Query: 117 A------FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GSE 159 L++E+MV+ +F + D+ LFY+FFEA LIPM+ +IG +G ++ Sbjct: 119 TQGFFALILLVEAMVVLSFEATDVFLFYLFFEAMLIPMYFLIGGFGDRASGRDAQEEATQ 178 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT---SSIIDLYAMSKFPF--SIQYWMWIA 214 R YAA KF LY G + ML A++ + T + I+D A S + W+++ Sbjct: 179 RSYAAVKFLLYNLAGGLVMLAAVIGLYTVTHTFSLTGILDARADGSLSMATSTERWLFLG 238 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF +FA+K P++P HTWLPNA +A T +V + ++ K+G + +RF L LFP AS++ Sbjct: 239 FFFAFAVKAPLWPVHTWLPNAMGEASTPVAVLITAVVDKVGTFAMLRFCLQLFPEASKWA 298 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 PVI L++I+I+Y +L+++ Q DIK+LIAY+S++H G++ +GIF+ G GA M+ Sbjct: 299 TPVILVLAVISILYGALLAVGQRDIKRLIAYASLSHFGFIILGIFAMTSQGQSGATLYMV 358 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HG+ ++AL G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 359 NHGISTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFVS 418 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFLV++ F+ + ++A+ G+VL+ALY L LY++ + G K E V + DL RE + Sbjct: 419 EFLVLVGTFERHKALGIVATVGIVLAALYVLVLYQRTMTGPVKPE-VSAMGDLRARELVV 477 Query: 455 VYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 P+ VL V G+YP P+ D + + + + K Sbjct: 478 AVPLIVLLVVLGVYPKPVTDVINPAVKQTMSDVHEK 513 >gi|113476768|ref|YP_722829.1| NAD(P)H-quinone oxidoreductase subunit 4 [Trichodesmium erythraeum IMS101] gi|123352074|sp|Q10ZG8|NU4C2_TRIEI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 2; AltName: Full=NAD(P)H dehydrogenase I, chain 4 2; AltName: Full=NDH-1, chain 4 2 gi|110167816|gb|ABG52356.1| proton-translocating NADH-quinone oxidoreductase, chain M [Trichodesmium erythraeum IMS101] Length = 561 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 156/413 (37%), Positives = 247/413 (59%), Gaps = 12/413 (2%) Query: 37 ALGISTINFIFSLFV-WSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 LG+ I+F +V W ++ S FQ++E Y W+ S+ + VDG+S+ LV+L Sbjct: 38 GLGVGAIDFALMCYVFWKYYNASDSGFQLVEKYLWLPQIGLSWAVSVDGLSMPLVLLAGL 97 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T I ++W+ + R + LVL S IG F++ D++L +I +E L+P++++I + Sbjct: 98 VTTLSIFAAWQ-VDYKPRLFYFLMLVLYSAQIGVFVAQDLMLLFIMWELELVPVYLLISI 156 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL--YAMSKFPFSIQYWMW 212 WGG +R YAA KF LYT SIF+L A + M + ++ D+ + +P + + ++ Sbjct: 157 WGGKKRRYAATKFLLYTAAASIFILVAALGMALYGEGNTTFDMVELGLKDYPLAFELLLY 216 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 + +F +K+ +FP HTWLP+AH +A S+ LAG++LKMGGYG IR L + A Sbjct: 217 LGLLITFGVKLAVFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYGLIRLNLEMLSDAHV 276 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 YFAPV+ L ++ I+Y L S Q+++K+ +AYSS+AHMG+V +GI S G+ GA+ Q Sbjct: 277 YFAPVLAILGVVNIVYGGLNSFGQSNMKRRLAYSSVAHMGFVLLGIASFTDLGISGALLQ 336 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 M+SHGL+++ LFF GV YDRLHT + GGL MP+ + + MA++ LPG SGF Sbjct: 337 MISHGLIAAVLFFLAGVTYDRLHTLALDEMGGLGQVMPKIFALFTISAMASLALPGMSGF 396 Query: 393 IGEFLVIMSVFQNS------NTVAV-LASFGVVLSALYSLWLYRKVVFGVSKC 438 E +V + V + TV V LA+ G++L+ +Y L + R++ + K Sbjct: 397 ASELMVFVGVTSSDIYSSTFCTVTVFLAAVGLILTPIYLLSMLRQMFYSTGKA 449 >gi|262373364|ref|ZP_06066643.1| NADH:ubiquinone oxidoreductase subunit 4 [Acinetobacter junii SH205] gi|262313389|gb|EEY94474.1| NADH:ubiquinone oxidoreductase subunit 4 [Acinetobacter junii SH205] Length = 532 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 171/435 (39%), Positives = 251/435 (57%), Gaps = 17/435 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI S HL VDG+S+L+V+LT L + SW IQ+N + + L VIG Sbjct: 75 WIQTLGISIHLAVDGLSLLMVLLTALLGVLAVGCSWGEIQKNVGFFHLNLLWSLGGVIGV 134 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYTFFGSIFMLFAIV 183 FL++D+ LF+ F+E L+P++ +I +WG G R+YAA KFFLYT + ML I+ Sbjct: 135 FLAIDLFLFFFFWEMMLVPIYFLIALWGHKGSNGRSRVYAATKFFLYTQIAGLIMLIGIL 194 Query: 184 -VMCWEKKTSSIID------LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ++ + + +I L + P + Y + FF FA+K+P+FP H WLP+AH Sbjct: 195 GLVVYGYMMTGMIGFDYNYLLAVANHLPPEVAYAFMLCFFIGFAVKLPVFPLHGWLPDAH 254 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 QAPTAGSV LAGI++K YG +RF++P FP AS FA + L LI I Y + ++ Q Sbjct: 255 AQAPTAGSVDLAGILIKTAAYGLLRFVIPFFPAASAQFADIAIILGLIGIFYGAFLAYQQ 314 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K+L+AY+SI+HMG++ + I++G +G M ML+HGL S+ALF G +Y+RLHT Sbjct: 315 TDMKRLLAYTSISHMGFILLAIYAGNILTFQGLMIMMLAHGLSSAALFIMSGQVYERLHT 374 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 RD+ GGL + +M F A +G+PG FIGEFL++M F+ ++A+ Sbjct: 375 RDLRLMGGLRGQLQYLPFFLMFFVAALVGVPGLGNFIGEFLILMGSFKAYPVFTIIAAVS 434 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +V + LY L L K +FG E+ Q LKDLS RE ++ + V+ GIYP Sbjct: 435 LVFAGLYGLILIHKALFGTPNPEQQQHYTSPLKDLSAREVTILMICVIGLVWLGIYPQTF 494 Query: 473 RDTFSVPLSSIIENY 487 D + ++ +Y Sbjct: 495 LDVSHSSMQWLVNSY 509 >gi|209525289|ref|ZP_03273831.1| proton-translocating NADH-quinone oxidoreductase, chain M [Arthrospira maxima CS-328] gi|209494304|gb|EDZ94617.1| proton-translocating NADH-quinone oxidoreductase, chain M [Arthrospira maxima CS-328] Length = 505 Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 170/476 (35%), Positives = 262/476 (55%), Gaps = 18/476 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLG--CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS++ ++P L +I+ L R+ A G+ ++SL + +FD + Q Sbjct: 2 LSVLIWIPLLAALLIVLWPNLSPQLSRQISLLTAGGL----LVWSLILARLFDPTVADLQ 57 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 M+E+ WI +Y+LGVDG+S+ LV++ L I SS I R Y L++ Sbjct: 58 MVEHITWIQPLGLNYYLGVDGLSLPLVIINALLVAIAIWSSDLDISRP-RLYYPLLLIIF 116 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + V G FLS ++LLF +F+E LIP++++I +WGG R YAA KF LYT + +L A Sbjct: 117 AGVAGTFLSSNLLLFILFYEVELIPLYLLIAIWGGKNRGYAATKFLLYTAVSGLLILAAF 176 Query: 183 VVMCWEKKTSS------IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + + W K I +S P + Q + F IKIP+ PFHTWLP+AH Sbjct: 177 LGIVWLTKAPDFDLDTLITSTLGVSALPLTTQLILLGGLVIGFGIKIPVVPFHTWLPDAH 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+A T SV LAG++LK+G YG +RF + LFP A AP + ++++++Y + ++ Q Sbjct: 237 VEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPDAWNAIAPYVASWAVVSVLYGASCAISQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 DIKK++AYSSIAHMGY+ + + + G++ QM+SHGL+S+ LF VGV+Y + + Sbjct: 297 KDIKKMVAYSSIAHMGYIILAFAAASPISLLGSVMQMVSHGLISALLFLTVGVVYKKSGS 356 Query: 357 RDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 RDI GL++ +P +M+V MA+ G+PG GF+ EFLV + +L Sbjct: 357 RDIDVIRGLLNPERGLPLIGSIMIVAVMASAGIPGLVGFVSEFLVFRGSMEVFPVQTLLC 416 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G L+++Y L + + FG E V L + R+R +AV+ F G+ P Sbjct: 417 MVGTGLTSVYFLIMINRAFFG-RLSESVINLPRVQWRDRIPAIALAVIITFLGLQP 471 >gi|296169178|ref|ZP_06850832.1| NADH-quinone oxidoreductase subunit M [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896157|gb|EFG75823.1| NADH-quinone oxidoreductase subunit M [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 525 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 191/511 (37%), Positives = 284/511 (55%), Gaps = 25/511 (4%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 LP+LSI+ +P G V VIL L RR L + ++ V F G S Sbjct: 4 TLPWLSILWLVPLAGSVLVILLPPGL---RRLAKWTGLVVGVATLAVAVVVTLGFKTGGS 60 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYM 115 ++Q +E + WI F +Y LGVDGI+++LV+LT L P ++ W E + Y+ Sbjct: 61 TYQFVESHSWIPAFGATYSLGVDGIAVVLVLLTAVLIPVLQVAGWNDGGEERNRGVQAYV 120 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM-FVIIGVWGGSERIYAAYKFFLYTFFG 174 L +ESMV+ + ++LD+LLFY+FFEA LIPM F+I G GG+ R AA KF LY FG Sbjct: 121 ALTLAIESMVLVSVVALDVLLFYVFFEAMLIPMYFLIGGFGGGAGRSRAAVKFLLYNLFG 180 Query: 175 SIFMLFAIVVM--CWEKKTSSIIDLYAMSKFPFSIQYW--------MWIAFFCSFAIKIP 224 + ML A++ + + S D + S +Y +++ F +FAIK P Sbjct: 181 GLIMLAAVIGLYVVTAEHGSGTFDFREIVAGVASGRYGADSAVFKALFLGFMFAFAIKAP 240 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 ++PFH WLP+A V+A A +V + +M K+G +G +R+ L LFP AS YF P+I L++I Sbjct: 241 LWPFHRWLPDAAVEATPATAVLMMAVMDKVGTFGMLRYCLQLFPGASTYFRPLIVVLAVI 300 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +IY ++V++ QTDI +LIAY+SI+H G++ +GIF G G+ ML+HGL ++A+F Sbjct: 301 GVIYGAIVAIGQTDIMRLIAYTSISHFGFIILGIFVMTSQGQSGSTLYMLNHGLSTAAVF 360 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G + R +R I YGG+ P A +V MA + LPG + FI EFLV++ F Sbjct: 361 LIAGFLISRHGSRAIADYGGVQKVAPILAGTFLVSAMATLSLPGLAPFISEFLVLLGTFN 420 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 A +VLSA+Y LWLY++V+ G +++ DL RE +V P+ L + Sbjct: 421 RYWLAAAFGVTALVLSAIYMLWLYQRVMTGPVAAGN-EKIGDLRARELLVVAPLIALLLV 479 Query: 465 FGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 G+YP P+ D ++ +EN G D Sbjct: 480 LGVYPKPVLDI----INPAVENTMTTIGQHD 506 >gi|156598659|gb|ABU85585.1| NADH-plastoquinone oxidoreductase subunit 4 [Scaevola aemula] Length = 503 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 169/498 (33%), Positives = 275/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 N P+L+I+ LP +ILF + G R+ G + I + I + + + F S Sbjct: 3 NFPWLTIIVILPIFAGSLILFFPH--KGNRARRGYTICICVLELILTTYAFCYHFQLDDS 60 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q++E Y WI +F + LG+DG+SI V+LT F+T L++W + N + + L Sbjct: 61 LIQLVEDYKWIHFFDFRWKLGIDGLSIGPVLLTGFITALATLAAWP-VTRNSQLFHFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 120 AMYSGQIGSFSSQDLLLFFIMWEFELIPVYLLLAMWGGKKRLYSATKFILYTAGGSIFLL 179 Query: 180 FAIVVMCWEKKTSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ++ + + S + +P +++ +IAFF +FA+K P+ P HTWLP+ H Sbjct: 180 MGVLGVAFYGSNESRFHFETSVNQSYPLALEIIFYIAFFMAFAVKSPILPLHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG IR + P A F+P + + I IIYA+ S+ Q Sbjct: 240 EAHYSTCMLLAGILLKMGAYGLIRINMEFLPHAHSIFSPWLMIVGTIQIIYAASTSLGQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++KK IAYSS++HMG++ IGI S + G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 300 NLKKRIAYSSVSHMGFILIGIGSITERGLNGAILQIISHGFIGAALFFLAGTSYDRIRLL 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ +P+ + F+MA++ LPG SGF E LV + + + Sbjct: 360 YLDEMGGVAIPVPKIFTIFSSFSMASLALPGMSGFFAELLVFFGIITSQKYLLMPKIAIT 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 420 FVMAIGILLTPIYSLSMLRQMFYGYKLFNTPNSYVFDFGPRELFVSISILIPVIVIGLYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 480 DFVLSLSVDKVEGILSNY 497 >gi|124024359|ref|YP_001018666.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9303] gi|193806230|sp|A2CD41|NU4C_PROM3 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|123964645|gb|ABM79401.1| putative NADH dehydrogenase subunit (chain 4) [Prochlorococcus marinus str. MIT 9303] Length = 563 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 174/507 (34%), Positives = 282/507 (55%), Gaps = 27/507 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 N P+LS+ P +G F++ F G G++ + ALGI+ + F+ ++ + +D S Sbjct: 24 NFPWLSLSILFPIVGAFLVPFIPDEGEGKQVRW-FALGIALVTFVITVAAYLYGYDPSLS 82 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E W+ D ++ +G DGIS+ L++LT+F+T +L++W F+ + FL Sbjct: 83 GLQLSERVSWLPDLGLTWAVGADGISMPLILLTSFITALAVLAAWPV---TFKPKLFFFL 139 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L + I F DMLLF++ +E L+P+++++ +WGG +R YAA KF +YT S+F Sbjct: 140 ILAMDGGQIAVFAVQDMLLFFLAWELELLPVYLLLAIWGGKKRQYAATKFIIYTAGSSLF 199 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L + M + + + +++ F Q + +F +K+P+ P HTWLP+A Sbjct: 200 ILLVALAMGFFGGGTPNFEYTNLAQQSFGTGFQLLCYAGLLIAFGVKLPIVPLHTWLPDA 259 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY +RF L P A FAP++ L ++ IIYA+L S Sbjct: 260 HGEATAPVHMLLAGILLKMGGYALMRFNAQLLPEAHAQFAPLLIVLGVVNIIYAALTSFA 319 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR H Sbjct: 320 QRNLKRKIAYSSISHMGFVLIGIGSFSALGTSGAMLQMISHGLIGASLFFLVGATYDRTH 379 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG+ M + V +A++ LPG SGF+ E +V + + Sbjct: 380 TLQLDEMGGVGQKMRIMFALWTVCALASLALPGMSGFVSELMVFVGFATDEAYTLTFRIV 439 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLT 462 +A LA+ GV+L+ +Y L + R++ FG + V L D RE C++ PI Sbjct: 440 IAGLAAIGVILTPIYLLSMLREIFFGKENDQLVSHTNLVDAEPREVYIISCLLVPI---- 495 Query: 463 VFFGIYPVPIRDTFSVPLSSIIENYTL 489 + G+YP + D+++ + +++ L Sbjct: 496 IGIGLYPRLMTDSYTASIQELVKRDEL 522 >gi|302543432|ref|ZP_07295774.1| NADH-quinone oxidoreductase, M subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461050|gb|EFL24143.1| NADH-quinone oxidoreductase, M subunit [Streptomyces himastatinicus ATCC 53653] Length = 554 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 180/506 (35%), Positives = 280/506 (55%), Gaps = 37/506 (7%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+ +P LG + +A + T+ + V D GR Sbjct: 1 MSFPLLTATAAVPALGAVATAAVPAARRAAAKWVALAFSLVTLALAAVILVRFDPDGGR- 59 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSW------KSIQENFR- 112 FQ+ E + WI D+ Y LGVDGI++ L+ LT L PF IL+ W + + N R Sbjct: 60 -FQLTESHAWIKDFGVRYELGVDGIAVALIALTAVLIPFIILAGWHDADPLEGARPNRRW 118 Query: 113 ----EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------G 157 + L++E+MV+ +F + D+ +FYIFFEA LIPM+ +IG +G Sbjct: 119 RPTQGFFALILLVEAMVVISFEATDVFVFYIFFEAMLIPMYFLIGGFGDRAGERSEEETA 178 Query: 158 SERIYAAYKFFLYTFFGSIFMLFAIV----VMCWEKKTSS-----IIDLYAMSKFPF--S 206 ++R YAA KF LY G + ML A+V V + T + I+D A + S Sbjct: 179 TQRSYAAVKFLLYNLAGGLIMLAAVVGLYAVTADDLGTGTFSLQQIVDARASGQLDMAAS 238 Query: 207 IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 + +++ FF +FA+K P++P HTWLPNA ++ + +V + ++ K+G + +RF L L Sbjct: 239 TERLLFLGFFFAFAVKAPLWPLHTWLPNAMGESTSPVAVLITAVVDKVGTFAMLRFCLQL 298 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 FP AS++ PVI L+LI+IIY +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G Sbjct: 299 FPEASKWATPVILVLALISIIYGALLAIGQRDIKRLIAYASISHFGFIILGIFAMTTQGQ 358 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 GA M++HG+ ++AL G + R +R I YGG+ P A ++ +A + L Sbjct: 359 GGATLYMVNHGISTAALMLVAGFLITRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSL 418 Query: 387 PGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD 446 PG + FI EFLV++ F V+A+ G+VL+ALY L LY++ + G K E+V+ + D Sbjct: 419 PGLAPFISEFLVLVGAFARYPVAGVIATLGIVLAALYVLILYQRTMTGPVK-EEVRSMPD 477 Query: 447 LSLRERCMVYPIAVLTVFFGIYPVPI 472 L RE +V P+ L +F G+YP P+ Sbjct: 478 LRPRELLVVAPLIALLLFLGVYPKPL 503 >gi|254525929|ref|ZP_05137981.1| NADH dehydrogenase i domain protein [Prochlorococcus marinus str. MIT 9202] gi|221537353|gb|EEE39806.1| NADH dehydrogenase i domain protein [Prochlorococcus marinus str. MIT 9202] Length = 534 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 168/502 (33%), Positives = 279/502 (55%), Gaps = 23/502 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 N P+LS P VI F G G+ + AL I+ I F+ ++ + + FD Sbjct: 11 NFPWLSASILFPIGSALVIPFFPDKGDGKEVRW-FALSIALITFLITVGSYINGFDINNE 69 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q+ E W+ D ++ +G DG+S+ L++LT+F+T +L++W ++ + + L Sbjct: 70 NVQLKENISWLPDLGLTWSVGADGMSMPLILLTSFITALAVLAAWP-VKFKPKLFFFLIL 128 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++ I F DMLLF++ +E LIP+++++ +WGG R YAA KF +YT SIF+L Sbjct: 129 VMDGGQIAVFAVQDMLLFFLTWELELIPVYLLLAIWGGKNRQYAATKFIIYTAGSSIFIL 188 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM--WIAFFCSFAIKIPMFPFHTWLPNAHV 237 A + M + + ++ FS ++ + ++ +F +K+P+ P HTWLP+AH Sbjct: 189 LAALAMGFYGTEIPNFEFSHLAAQDFSQKFQILCYVGLLIAFGVKLPIVPLHTWLPDAHG 248 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +RF L P+A FAP++ L ++ IIYA+L S Q Sbjct: 249 EATAPVHMLLAGILLKMGGYALLRFNAQLLPVAHAQFAPLLIVLGVVNIIYAALTSFAQR 308 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR T Sbjct: 309 NLKRKIAYSSISHMGFVLIGIGSFSSLGTSGAMLQMVSHGLIGASLFFLVGATYDRTKTL 368 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NTVA 410 + G+ M + ++A++ LPG SGF+ E +V + +A Sbjct: 369 KLDEMSGVGQKMRIMFALWTACSLASLALPGMSGFVSELMVFTGFVTDEIYTLPFRVVMA 428 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRE----RCMVYPIAVLTVF 464 LA+ GV+L+ +Y L + R++ FG + +++ K D RE C++ PI + Sbjct: 429 SLAAIGVILTPIYLLSMLREIFFGKENPKLIEERKLIDAEPREVYIIACLLLPI----IG 484 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G+YP + +++ ++++++ Sbjct: 485 IGLYPRLVTESYIASINNLVDR 506 >gi|118617958|ref|YP_906290.1| NADH dehydrogenase subunit M [Mycobacterium ulcerans Agy99] gi|118570068|gb|ABL04819.1| NADH dehydrogenase I (chain M) NuoM (NADH- ubiquinone oxidoreductase chain M) [Mycobacterium ulcerans Agy99] Length = 529 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 184/511 (36%), Positives = 284/511 (55%), Gaps = 26/511 (5%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 ++P+L+++ +P V IL L R+ L S + S+ V + F Sbjct: 5 HVPWLTLLWLVPLAASVLTILLPPGL---RQLAKWTGLIASVVTLAMSVVVATGFKPSGE 61 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR---EYMI 116 +Q +E WI F SY LGVDGI+++LV+LTT L P ++ W E R Y+ Sbjct: 62 HYQFVENRSWIPAFGASYTLGVDGIAVVLVLLTTVLIPLLQIAGWNDGGERTRGVHAYVA 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGS 175 L +ESMV+ + ++LD+LLFY+FFEA LIPM+ +IG +G G R AA KF LY FG Sbjct: 122 LTLAIESMVLISVVALDVLLFYVFFEAMLIPMYFLIGGFGQGRARSGAAVKFLLYNLFGG 181 Query: 176 IFMLFAIVVM--CWEKKTSSIIDLYAM---------SKFPFSIQYWMWIAFFCSFAIKIP 224 + ML A++ + + S D + + P ++ +++ F +FAIK P Sbjct: 182 LIMLAAVIGLYVVTAQNGSGTFDFRDIVAGVQGGHYGEHP-AVFKALFLGFMFAFAIKAP 240 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 ++PFH WLP+A V++ A +V + +M K+G +G +R+ L LFP AS YF P+I L++I Sbjct: 241 LWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPDASTYFRPLIVTLAII 300 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +IY ++V++ QTDI +LIAY+SI+H G++ GIF G G+ ML+HGL ++A+F Sbjct: 301 GVIYGAVVAIGQTDIMRLIAYTSISHFGFIIAGIFVMTTQGQSGSTLYMLNHGLSTAAVF 360 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G + R +R I YGG+ P A +V MA + LPG + FI EFLV++ F Sbjct: 361 LIAGFLISRHGSRAIADYGGVQKVAPVLAGTFLVSAMATLSLPGLAPFISEFLVLLGTFN 420 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 A L +VLSA+Y LWLY++V+ G + +++ DL RE +V P+ + + Sbjct: 421 RYWLAAALGVTALVLSAIYMLWLYQRVMTG-PLAKGNERIGDLVPREMIVVAPLIAMLLI 479 Query: 465 FGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 G+YP P+ D ++ +E+ G D Sbjct: 480 LGVYPKPVLDV----INPAVEHTMSTIGQHD 506 >gi|108773212|ref|YP_635798.1| NADH dehydrogenase subunit 4 [Chara vulgaris] gi|122224960|sp|Q1ACE9|NU4C_CHAVU RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|77157868|gb|ABA61909.1| subunit 4 of NADH-plastoquinone oxidoreductase [Chara vulgaris] Length = 493 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 172/482 (35%), Positives = 275/482 (57%), Gaps = 19/482 (3%) Query: 2 NLPFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVF-DKGR 59 P+LSI+ P F F+ L S R + LGI ++F+ +++ + D Sbjct: 3 QFPWLSIIILFPLFAAFFIPLLPSRENQTVRWY---TLGICLLDFLVMSYIFGYYYDFHN 59 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 SSFQ E WI + LGVDG+S+ L++LT +T +L++W I N + + Sbjct: 60 SSFQFKESIEWIPTIGFKWALGVDGLSMGLILLTGLVTTLAVLAAWP-ITCNPKLFYFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 LV+ S IG F S D+ LF++ +E LIP++++I +WGG R+YAA KF YT GS+F+ Sbjct: 119 LVMYSGQIGLFTSQDLFLFFLMWELELIPIYLLISLWGGRRRLYAATKFIFYTAIGSLFL 178 Query: 179 LFAIVVMCW---EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 A +C+ T DL A ++PF ++ +++ F ++A+K+P+ PFHTWLP+ Sbjct: 179 FIATFTVCFYGANIATWHFEDL-AEKEYPFILEKILYLGFGFAYAVKLPIIPFHTWLPDT 237 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + + LAGI+LKMGGYG IR + LFP A YFAP + L + IIYA+ V + Sbjct: 238 HGEAHYSTCMLLAGILLKMGGYGWIRINMTLFPNAHAYFAPWLVILGTVQIIYAASVCLS 297 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S G+ GA+ QM+SHGL+ ++LFF G YDR+ Sbjct: 298 QKNLKRRIAYSSISHMGFVLIGICSFTNIGLSGAICQMISHGLIGASLFFLAGTTYDRIR 357 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NT 408 T + GG+ MP+ + F++A++ LP SGF+ E ++ + + ++ Sbjct: 358 TVSLSEMGGIALKMPKMFSMFTGFSLASLALPTMSGFVAEMMIFLGIISSTFYSPSFRCF 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGI 467 + + + GV+L+ +Y L + R++ +GV + D RE ++ + + + G+ Sbjct: 418 IILFQALGVILTPIYLLSMLRQMFYGVDTFHFESMSFIDSGPREVFIIVSLFIPVIIIGL 477 Query: 468 YP 469 YP Sbjct: 478 YP 479 >gi|298246363|ref|ZP_06970169.1| proton-translocating NADH-quinone oxidoreductase, chain M [Ktedonobacter racemifer DSM 44963] gi|297553844|gb|EFH87709.1| proton-translocating NADH-quinone oxidoreductase, chain M [Ktedonobacter racemifer DSM 44963] Length = 523 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 183/516 (35%), Positives = 302/516 (58%), Gaps = 40/516 (7%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKG------R 59 LS++ FLP +G V+L + V+L ++ N +FS + ++ + Sbjct: 6 LSLLIFLPLIGGAVVL--CLPKANQVLIRWVSLAFASANVLFSFILALLYSQATVSNFSH 63 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 SSFQ E WI +Y L VDGIS+LLVVLT+ L C+ +S++ Q+ F+ YM Sbjct: 64 SSFQ--ERLPWIPSIGINYTLDVDGISLLLVVLTSLLGLVCMAASYRQ-QKRFKSYMAFM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+L+S ++G FLS ++ LFYIF+E LIP + ++G WGG RIYAA+KF LYT GS+ M Sbjct: 121 LLLQSGILGVFLSANLFLFYIFWELMLIPAYFLVGTWGGERRIYAAFKFVLYTSAGSLLM 180 Query: 179 LFAIVVMCW----------------EKKTSSIID-----LYAMSKFPFSIQYWMWIAFFC 217 L I+ + + T+ + + + + F + Q W+++AF Sbjct: 181 LAGIIAVGYFYTRTVGAGCGFTLDMGTLTNGLTNPNTGAVTCAAHFDSTTQLWLFLAFAA 240 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+KIP PFH+WLP+ + +AP + LAG M K G YG +R +PLFPLA Q AP Sbjct: 241 AFAVKIPFVPFHSWLPDTYSEAPAPVTAILAGAMSKTGAYGFLRICIPLFPLAVQALAPF 300 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 L+++ I+Y +++++VQTD+K+++AYSSI+H+G V +G+F+ GVEG++ QM++HG Sbjct: 301 FSILAVVGILYCAVLALVQTDLKRILAYSSISHLGVVMLGMFAFNAQGVEGSVLQMVNHG 360 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 + ++ALF G I +R+ TR+I +GG+ +P A V+++ ++++GLPG + F GEFL Sbjct: 361 ITTAALFLIAGYIEERVGTRNIADFGGIATRVPIMATVLLIAALSSLGLPGLNSFAGEFL 420 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG-------VSKCEKVQQLKDLSLR 450 ++ F+++ T+ VL + VV +A Y L ++ V+ G V++ + L D+ + Sbjct: 421 SLLGAFRSNVTLGVLGTAVVVPAAWYMLRFFQGVMTGPGPALGPVAQVTRRGGLADIRMG 480 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 E + P+ L + G+ P P+ P+ + ++N Sbjct: 481 EFLAILPLLALIFYIGLQPAPLTFLLHQPVLNTMQN 516 >gi|317968112|ref|ZP_07969502.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. CB0205] Length = 542 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 176/501 (35%), Positives = 280/501 (55%), Gaps = 26/501 (5%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRSSF 62 P+LS P I F G G++ + ALG++ I F+ ++ + + +D + Sbjct: 22 PWLSASILFPIAAALCIPFIPDKGDGKQVRW-FALGVALITFLITVGAYLTGYDPSDPNL 80 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E W+ S+ +G DGIS+ L++LT+F+T +L++W +F+ + FL+L Sbjct: 81 QLVERVSWLPQVGLSWSVGADGISMPLILLTSFITALAVLAAWPV---SFKPRLFYFLLL 137 Query: 122 --ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + I F DMLLF++ +E L+P+++++ +WGG +R YAA KF LYT S+F+L Sbjct: 138 AMDGGQIAVFAVQDMLLFFLAWELELLPVYLLLAIWGGKKRQYAATKFILYTAGSSLFIL 197 Query: 180 FAIVVMCWEKKTSSIIDLYAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A + M + T+S M+K F Q + +F +K+P+ P HTWLP+AH + Sbjct: 198 LAGLAMAFYGGTTSFEYSDLMAKGFSLKFQLLAYAGLLIAFGVKLPIVPLHTWLPDAHGE 257 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + LAGI+LKMGGY +RF + P FAP++ L ++ IIYA+L S Q + Sbjct: 258 ATAPVHMLLAGILLKMGGYALLRFNCQILPDGHAVFAPLLVVLGVVNIIYAALTSFAQRN 317 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR HT Sbjct: 318 LKRKIAYSSISHMGFVLIGIGSFSALGSSGAMLQMISHGLIGASLFFLVGATYDRTHTLQ 377 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-----TVAV-- 411 + GG+ M + + V ++A++ LPG SGF+ E +V + + VA+ Sbjct: 378 LDEMGGVGQKMRKMFALWTVCSLASLALPGMSGFVSELMVFVGFATDDAYTLPFRVAMDG 437 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLTVFF 465 LA+ GV+L+ +Y L + R++ +G K E V L D RE C++ PI + Sbjct: 438 LAAIGVILTPIYLLSMLREIFYGKEKAELVDHTNLVDAEPREIYIIGCLLVPI----IGI 493 Query: 466 GIYPVPIRDTFSVPLSSIIEN 486 G+YP + D++ + ++ Sbjct: 494 GLYPRLMTDSYKASMEQLVAR 514 >gi|33864275|ref|NP_895835.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9313] gi|81576771|sp|Q7V4E4|NU4C_PROMM RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|33641055|emb|CAE22184.1| putative NADH dehydrogenase (complex I) subunit (chain 4) [Prochlorococcus marinus str. MIT 9313] Length = 563 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 174/507 (34%), Positives = 282/507 (55%), Gaps = 27/507 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 N P+LS+ P +G F++ F G G++ + ALGI+ + F+ ++ + +D S Sbjct: 24 NFPWLSLSILFPIVGAFLVPFIPDEGEGKQVRW-FALGIALVTFLITVAAYLYGYDPSLS 82 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E W+ D ++ +G DGIS+ L++LT+F+T +L++W F+ + FL Sbjct: 83 GLQLSERVSWLPDLGLTWAVGADGISMPLILLTSFITALAVLAAWPV---TFKPKLFFFL 139 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L + I F DMLLF++ +E L+P+++++ +WGG +R YAA KF +YT S+F Sbjct: 140 ILAMDGGQIAVFAVQDMLLFFLAWELELLPVYLLLAIWGGKKRQYAATKFIIYTAGSSLF 199 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L + M + + + +++ F Q + +F +K+P+ P HTWLP+A Sbjct: 200 ILLVALAMGFFGGGTPNFEYTNLAQQSFGTGFQLLCYAGLLIAFGVKLPIVPLHTWLPDA 259 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY +RF L P A FAP++ L ++ IIYA+L S Sbjct: 260 HGEATAPVHMLLAGILLKMGGYALMRFNAQLLPEAHAQFAPLLIVLGVVNIIYAALTSFA 319 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR H Sbjct: 320 QRNLKRKIAYSSISHMGFVLIGIGSFSALGTSGAMLQMISHGLIGASLFFLVGATYDRTH 379 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG+ M + V +A++ LPG SGF+ E +V + + Sbjct: 380 TLQLEEMGGVGQKMRIMFALWTVCALASLALPGMSGFVSELMVFVGFATDEAYTLTFRIV 439 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLT 462 +A LA+ GV+L+ +Y L + R++ FG + V L D RE C++ PI Sbjct: 440 IAGLAAIGVILTPIYLLSMLREIFFGKENDQLVSHTNLVDAEPREVYIISCLLVPI---- 495 Query: 463 VFFGIYPVPIRDTFSVPLSSIIENYTL 489 + G+YP + D+++ + +++ L Sbjct: 496 IGIGLYPRLMTDSYTASIQELVKRDDL 522 >gi|159903597|ref|YP_001550941.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9211] gi|159888773|gb|ABX08987.1| putative NADH Dehydrogenase (complex I) subunit (chain 4) [Prochlorococcus marinus str. MIT 9211] Length = 523 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 167/500 (33%), Positives = 281/500 (56%), Gaps = 18/500 (3%) Query: 5 FLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWS-VFDKGRSSF 62 FLS++ LP LG ++ LF+ +A+G + +F+ + V+S +F+K S Sbjct: 17 FLSLIVLLPALGALIMQLFNDKENTRPNIHRNIAIGFLSADFLLIVIVFSFLFNKQTSQL 76 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+IE W+ + LGVDG+S LV+L+ +T ++SWK I + Y L+ Sbjct: 77 QLIERISWLPAIGLEWSLGVDGLSAPLVILSGLITLLAAIASWK-ITNKPKLYFSLILIQ 135 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S FLS D LLF++ +E L+P++++I +WGG R+YAA KF LYT S+ +L + Sbjct: 136 ASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGKRRLYAATKFILYTALASLLILIS 195 Query: 182 IVVMCWEKK--TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + T ++ +L A S + + ++ F F +K+P+FP HTWLP+AH +A Sbjct: 196 GLALALSGSEFTLNLSELTARSA-SGTFAIFCYLGFLVGFGVKLPIFPLHTWLPDAHGEA 254 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 S+ LAGI+LKMGGY IRF + +FP AP + + ++ +IY +L + Q ++ Sbjct: 255 NAPVSMLLAGILLKMGGYALIRFNVQMFPETHIKLAPALIIIGIVNVIYGALNAFAQDNV 314 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+R +T I Sbjct: 315 KRRIACSSVSHMGFVLLGIGAINALGLSGAMLQMISHGLIAAAMFFVTGSFYERTNTLSI 374 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV-------L 412 GGL +P + ++ ++A++ LPG SGF+ E V + + ++ + Sbjct: 375 PNMGGLAKVLPITFALFLISSLASLALPGMSGFVSEITVFLGITSQEGFTSIFRSITILI 434 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ G+VL+ +Y L + R+V FG + + +K+++ RE + + + T+ G +P Sbjct: 435 AAIGLVLTPIYLLSMCRRVFFG-PRIPALAMVKEMNARELSIGLSLLLPTLIIGFWPRIA 493 Query: 473 RDTF---SVPLSSIIENYTL 489 D F + L++ +E TL Sbjct: 494 TDIFENSTNALANTLETQTL 513 >gi|157412506|ref|YP_001483372.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9215] gi|193806229|sp|A8G2F5|NU4C_PROM2 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|157387081|gb|ABV49786.1| putative NADH dehydrogenase subunit (chain 4) [Prochlorococcus marinus str. MIT 9215] Length = 534 Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 168/502 (33%), Positives = 279/502 (55%), Gaps = 23/502 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 N P+LS P VI F G G+ + AL I+ I F+ ++ + + FD Sbjct: 11 NFPWLSASILFPIGSALVIPFFPDKGDGKEVRW-FALSIALITFLITVGSYINGFDINNE 69 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q+ E W+ D ++ +G DG+S+ L++LT+F+T +L++W ++ + + L Sbjct: 70 NVQLKENISWLPDLGLTWSVGADGMSMPLILLTSFITALAVLAAWP-VKFKPKLFFFLIL 128 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++ I F DMLLF++ +E LIP+++++ +WGG R YAA KF +YT SIF+L Sbjct: 129 VMDGGQIAVFAVQDMLLFFLTWELELIPVYLLLAIWGGKNRQYAATKFIIYTAGSSIFIL 188 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM--WIAFFCSFAIKIPMFPFHTWLPNAHV 237 A + M + + ++ FS ++ + ++ +F +K+P+ P HTWLP+AH Sbjct: 189 LAALAMGFYGTEIPNFEFSHLAAQDFSQKFQILCYVGLLIAFGVKLPIVPLHTWLPDAHG 248 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +RF L P+A FAP++ L ++ IIYA+L S Q Sbjct: 249 EATAPVHMLLAGILLKMGGYALLRFNAQLLPVAHAQFAPLLIVLGVVNIIYAALTSFAQR 308 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR T Sbjct: 309 NLKRKIAYSSISHMGFVLIGIGSFSSLGTSGAMLQMVSHGLIGASLFFLVGATYDRTKTL 368 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NTVA 410 + G+ M + ++A++ LPG SGF+ E +V + +A Sbjct: 369 KLDEMSGVGQKMRIMFALWTACSLASLALPGMSGFVSELMVFTGFVTDEVYTLPFRVVMA 428 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRE----RCMVYPIAVLTVF 464 LA+ GV+L+ +Y L + R++ FG + +++ K D RE C++ PI + Sbjct: 429 SLAAIGVILTPIYLLSMLREIFFGKENPKLIEERKLIDAEPREVYIIACLLLPI----IG 484 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G+YP + +++ ++++++ Sbjct: 485 IGLYPRLVTESYIASINNLVDR 506 >gi|78778538|ref|YP_396650.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9312] gi|123554765|sp|Q31D31|NU4C_PROM9 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|78712037|gb|ABB49214.1| NADH dehydrogenase subunit M [Prochlorococcus marinus str. MIT 9312] Length = 534 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 169/502 (33%), Positives = 274/502 (54%), Gaps = 23/502 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRR-SFFGVALGISTINFIFSLFVWSVFDKGRS 60 N P+LS P FVI F G G+ +F +++ ++T ++ + FD Sbjct: 11 NFPWLSASILFPIGSAFVIPFFPDKGDGKEVRWFALSIALTTFLITVGSYI-NGFDINNE 69 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q+ E W+ D ++ +G DGIS+ L++LT+F+T +L++W ++ + + L Sbjct: 70 NVQLKENVSWLPDLGLTWSVGADGISMPLILLTSFITALAVLAAWP-VKFKPKLFFFLIL 128 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V++ I F DMLLF++ +E LIP+++++ +WGG R YAA KF +YT SIF+L Sbjct: 129 VMDGGQIAVFAVQDMLLFFLTWELELIPVYLLLAIWGGKNRQYAATKFIIYTAGSSIFIL 188 Query: 180 FAIVVMCWEKKTSSIIDL--YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A + M + + A F Q ++ +F +K+P+ P HTWLP+AH Sbjct: 189 LAALAMGFYGTEIPNFEFSHLAAQDFTQKFQILCYVGLLIAFGVKLPIVPLHTWLPDAHG 248 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +RF L P A FAP++ L ++ IIYA+L S Q Sbjct: 249 EATAPVHMLLAGILLKMGGYALLRFNAQLLPAAHAQFAPLLIVLGVVNIIYAALTSFAQR 308 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR T Sbjct: 309 NLKRKIAYSSISHMGFVLIGIGSFSSLGTSGAMLQMVSHGLIGASLFFLVGATYDRTKTL 368 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NTVA 410 + G+ M + ++A++ LPG SGF+ E +V + +A Sbjct: 369 KLDEMSGVGQKMRIMFALWTACSLASLALPGMSGFVSELMVFTGFVTDEVYTLPFRVIMA 428 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVS--KCEKVQQLKDLSLRE----RCMVYPIAVLTVF 464 LA+ GV+L+ +Y L + R++ FG K + ++L D RE C++ PI + Sbjct: 429 SLAAIGVILTPIYLLSMLREIFFGKENPKLTEERKLIDAEPREVYIIACLLLPI----IG 484 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G+YP + +++ ++++++ Sbjct: 485 IGLYPRLVTESYLASINNLVDR 506 >gi|254819284|ref|ZP_05224285.1| NADH dehydrogenase subunit M [Mycobacterium intracellulare ATCC 13950] Length = 531 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 192/515 (37%), Positives = 292/515 (56%), Gaps = 34/515 (6%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRS---FFGVALGISTINFIFSLFVWSVFDKG 58 ++P+LS++ +P G +I+ + G R + G+ GI+T+ ++ V F G Sbjct: 7 SVPWLSVLWLVPLAGAVLIIL---MPPGLRQLAKWTGLVFGIATLAV--AIVVTLGFKTG 61 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR---EY 114 + +Q +E + WI F Y LGVDGI+++LV+LT L P ++ W + R Y Sbjct: 62 GAPYQFVEKHQWIPAFGAGYTLGVDGIAVVLVLLTAVLIPVLQIAGWNDGGQRTRGVHAY 121 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM-FVIIGVWGGSERIYAAYKFFLYTFF 173 + L +ESMV+ + ++LD+LLFY+FFEA LIPM F+I G GGS R AA KF LY F Sbjct: 122 VALTLAIESMVLISVIALDVLLFYVFFEAMLIPMYFLIGGFGGGSGRSRAAVKFLLYNLF 181 Query: 174 GSIFMLFAIVVM--CWEKKTSSIIDLYAMSKFPFSIQYW--------MWIAFFCSFAIKI 223 G + ML A++ + + S D + S +Y +++ F +FAIK Sbjct: 182 GGLIMLAAVIGLYVVTSQHGSGTFDFREIVAGVASGRYGADSAVFKALFLGFMFAFAIKA 241 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 P++PFH WLP+A V+A A +V + +M K+G +G +R+ L LFP AS YF P+I L++ Sbjct: 242 PLWPFHRWLPDAAVEATPATAVLMMAVMDKVGTFGMLRYCLQLFPDASTYFRPLIVVLAV 301 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 I ++Y ++V++ QTDI +LIAY+SI+H G++ +GIF G G+ ML+HGL ++A+ Sbjct: 302 IGVVYGAIVAIGQTDIMRLIAYTSISHFGFIILGIFVMTSQGQSGSTLYMLNHGLSTAAV 361 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 F G + R +R I YGG+ P A +V MA + LPG + FI EFLV++ F Sbjct: 362 FLIAGFLISRHGSRAIADYGGVQKVAPILAGTFLVSAMATLSLPGLAPFISEFLVLLGTF 421 Query: 404 QNSNTVAVLASFGV---VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 N + A FGV VLSA+Y LWLY++V+ G +++ DL RE +V P+ Sbjct: 422 ---NRYWLAAGFGVTALVLSAVYMLWLYQRVMTGPVATGN-EKIGDLRARELIVVAPLIA 477 Query: 461 LTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 L + GIYP P+ D ++ +EN G D Sbjct: 478 LLLVLGIYPKPVLDI----INPAVENTMTTIGQHD 508 >gi|301353350|ref|YP_003795631.1| NADH-plastoquinone oxidoreductase subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|301016268|gb|ADK47555.1| NADH-plastoquinone oxidoreductase subunit 4 [Pteridium aquilinum subsp. aquilinum] Length = 502 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 185/506 (36%), Positives = 282/506 (55%), Gaps = 38/506 (7%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYL-GCGRRSFFGVALGI-----STINFIFSLFVWSVF 55 N+P L+ + P +F L L G R LGI S+I +IF S F Sbjct: 4 NVPRLATIVLFP---IFASLLLPILPRDGNRIIRWYTLGICILEFSSITYIFH----SHF 56 Query: 56 DKGRSSFQMIEYYHWIDYFCSYH--LGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 + S Q++E +WI +H LG+DG+S+ L++LT F+T ++W I N R Sbjct: 57 EIDFQSIQLLETSNWISSM-HFHWILGIDGLSMGLILLTGFVTTPATSAAWP-ITRNTRL 114 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 + + LV+ S IG F+S D+LLF+ +E LIP+++++ +WGG R Y+A KF LYT Sbjct: 115 FHFSMLVMYSGQIGLFVSRDILLFFFMWELELIPVYLLLCLWGGKRRSYSATKFVLYTAG 174 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLY-AMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 GSIF+L A + + D+ +M++ +P S++ +++ F ++A+K+P+FPFHTW Sbjct: 175 GSIFLLVAALTTSFYGNDIPSFDIQDSMNRSYPISLEILLYLGFLIAYAVKLPIFPFHTW 234 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+ H +A + + LAG++ KMGGYG IR L L A F + I I+YASL Sbjct: 235 LPDTHGEAHYSTCMLLAGVLSKMGGYGLIRINLELLTHAHFLFGSWLMLFGAIQIVYASL 294 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 SM Q ++K+ IAYSSI+HMG+V IGI S +G+ GA+ QM+SHGL+ +ALFF G Y Sbjct: 295 ASMSQRNLKRRIAYSSISHMGFVAIGIGSLTDAGINGAISQMISHGLIGAALFFLAGTCY 354 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---- 407 DR T + GG+ MP+ + VF++A++ LPG SGF+ E LV V + Sbjct: 355 DRTRTLFLDQLGGIATPMPKLFTMFTVFSLASLALPGMSGFVSELLVFSGVITSERYSFL 414 Query: 408 ---TVAVLASFGVVLSALYSLWLYRKVVFGVSKC-EKVQQLKDLSLRE----RCMVYPIA 459 + L + G VL+++Y L + R++ +G E L D RE C++ PI Sbjct: 415 FKTGITALEATGTVLTSIYLLSMLRRIFYGYRLVNESNPYLIDFGPRELFISTCLLLPI- 473 Query: 460 VLTVFFGIYP---VPIRDTFSVPLSS 482 + G YP +P+R + +P+ S Sbjct: 474 ---LGIGSYPNLILPLRGSKVLPILS 496 >gi|311741754|ref|ZP_07715565.1| NADH-quinone oxidoreductase subunit M [Aeromicrobium marinum DSM 15272] gi|311314760|gb|EFQ84666.1| NADH-quinone oxidoreductase subunit M [Aeromicrobium marinum DSM 15272] Length = 513 Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 158/481 (32%), Positives = 279/481 (58%), Gaps = 10/481 (2%) Query: 6 LSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS++ P LG + V +R+ A ++ + SL V + +D +Q+ Sbjct: 3 LSLLIATPILGALLVTAMPRGTEAAQRNAKYTAFAVTLVTLGLSLAVLARYDTDAGGYQL 62 Query: 65 IEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKS---IQENFREYMIAFLV 120 E + WI + Y +G++GI + LV+LTT L P +L+S+ + + Y LV Sbjct: 63 TEQHEWIGPLGAFYSVGLNGIGLTLVLLTTVLVPIVVLASFGDKLPTRRSANSYFAWMLV 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE + +G F++ D+ LFY+ FEA+L+P++ +IG +GG +R YAA KF +Y G + ML Sbjct: 123 LEGLALGVFMATDVFLFYVLFEATLVPIYFLIGSYGGPQRSYAAVKFLIYNLVGGLLMLA 182 Query: 181 AIV----VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 AIV V + S ++ + + + +++ FF +FAIK P++PFHTWLP+A Sbjct: 183 AIVGLYVVSSRAGEASFLLSDLQNLEIDGTTERLLFVGFFIAFAIKAPLWPFHTWLPDAA 242 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 A SV + ++ K+G +G IR+ L +FP AS++ +PV+ L++I+I+Y +L+++ Q Sbjct: 243 ASATPGTSVLMVSVIDKVGTFGMIRWCLEIFPGASEWASPVVLVLAVISIVYGALLAVGQ 302 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 DI++L+AY+S++H G++ +GIF + G++ M +HGL ++ALF G++ R + Sbjct: 303 DDIRRLVAYTSVSHFGFIILGIFVFTTTSTAGSVLYMFNHGLSTAALFLVTGIMVARRGS 362 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 I +GG+ P + V+++ ++++ LPG + F+ EF+V++ F S +AV+A+ G Sbjct: 363 ASIADFGGVQKIAPVMSGVLLIAGLSSLSLPGLAPFVSEFMVLVGTFTRSIPLAVVATLG 422 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 +VL+ALY L +Y++ + G + + DL+ RE + P VL + G +P P+ D Sbjct: 423 MVLAALYILIMYQRTMTG-PLAAGAEGVTDLTTREVAALTPTLVLIIGLGFFPQPVLDVI 481 Query: 477 S 477 + Sbjct: 482 N 482 >gi|311897902|dbj|BAJ30310.1| putative NADH-quinone oxidoreductase subunit M [Kitasatospora setae KM-6054] Length = 537 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 173/475 (36%), Positives = 273/475 (57%), Gaps = 31/475 (6%) Query: 30 RRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILL 88 RR+ VAL +S + V + F+ G + +Q+ E Y WI F S+ LG DGI L Sbjct: 31 RRTTKAVALAVSAATLGLAAAVAASFETGGARYQLTESYSWIRSFGISFSLGADGIGTAL 90 Query: 89 VVLTTFLTPFCILSSWKSIQ--------ENFREYMIAF---LVLESMVIGAFLSLDMLLF 137 V+LT L P +L+ W E+ R F L +ESMV+ +FL+ D+ +F Sbjct: 91 VLLTAVLVPLVMLAGWHDADPAAPEGSFESKRRTQAFFALILAVESMVLVSFLATDVFVF 150 Query: 138 YIFFEASLIPMFVIIGVWGGS--------ERIYAAYKFFLYTFFGSIFMLFAIV---VMC 186 Y+FFEA LIPM+ +IG +G +R YAA KF LY G + ML A++ V+ Sbjct: 151 YVFFEAMLIPMYFLIGGFGDRAGGPDADRQRSYAAVKFLLYNLLGGLVMLAAVIGLYVVA 210 Query: 187 WEKKTSS-----IIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ ++ + D + + + Q +++ FF +FA+K P++P HTWLPNA ++ Sbjct: 211 GDQGHATFSLTGLTDAISSGQLVIEPNAQRALFLGFFFAFAVKAPLWPLHTWLPNAMGES 270 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 +V + ++ K+G + +RF L LFP AS+ FAPVI L+L+ I+Y +LV++ Q DI Sbjct: 271 TAGTAVLITAVVDKVGTFAMLRFCLGLFPDASKTFAPVIMVLALVGIVYGALVAIGQKDI 330 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+L+AY+SI+H G++ +GIF+ G GA M++HG+ ++A G + R +R I Sbjct: 331 KRLVAYASISHFGFIILGIFAMTSQGQSGATLYMVNHGISTAAWMLVAGFLISRRGSRLI 390 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 YGG+ P A ++ +A + LPG + F+ EFLV++ F + V+A+FG+VL Sbjct: 391 ADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFVSEFLVLVGTFSRYPALGVVATFGIVL 450 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 +ALY+L LY++ + G K V+ +KDL +RE +V P+ LT+ G+YP P+ D Sbjct: 451 AALYALLLYQRTMTGPVKA-GVEGVKDLKVRELAVVAPLVALTLLLGVYPKPLTD 504 >gi|110639000|ref|YP_679209.1| NADH:ubiquinone oxidoreductase subunit M [Cytophaga hutchinsonii ATCC 33406] gi|110281681|gb|ABG59867.1| NADH dehydrogenase subunit M [Cytophaga hutchinsonii ATCC 33406] Length = 564 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 184/534 (34%), Positives = 293/534 (54%), Gaps = 81/534 (15%) Query: 27 GCGRRSFFGVALGISTINFIFSLFVWSVFDKGR---SSFQMIEYYHWIDYF--------- 74 G R++ +++ ++ + S++++ F S+ + Y ++F Sbjct: 25 GEDHRNYRWISVAVTALQLCLSIYLFVAFKPEYFQFHSYDSLVYMEKANWFQLRLGNLGV 84 Query: 75 --CSYHLGVDGISILLVVLT--TFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 +Y LG+DG+S+ +++L+ LT C +SW +I + + Y +L+L + G FL Sbjct: 85 LSVNYFLGIDGLSLSMILLSGIVLLTGAC--ASW-NITKQAKGYHALYLLLCISIPGCFL 141 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC---- 186 +LD+ LF++FFE L+PMF +IG+WGG R YA+ KFFLYT GSI +L +V+ Sbjct: 142 ALDLFLFFLFFEFMLLPMFFLIGIWGGVRREYASIKFFLYTLLGSILILIVFIVLLISTY 201 Query: 187 ---------WEKKTSSI---------------------IDLYAMSK----FP-------- 204 + +I +DL +S FP Sbjct: 202 HPAEMIEHLADNSGYTIQHIHEGIHSGELTNNFPVVHSLDLIQLSNPVNYFPNGLLGVHN 261 Query: 205 ------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 +SI+ W + A F IK+P FPFHTWLP+AHV+APTA SV LAGI+LK+GGYG Sbjct: 262 TLTICGYSIRAWCFAALLVGFLIKLPAFPFHTWLPDAHVEAPTAVSVVLAGILLKIGGYG 321 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +R PLFP + + + + +I I+YA+LV++ QTD+KK+IAYSS++HMG+V +G+ Sbjct: 322 LMRIAWPLFPQEAADASWWVGLIGVITILYAALVALAQTDLKKMIAYSSVSHMGFVLLGL 381 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 + G+ GA++QM SHG++S+ LF VGV+YDR H R I Y GL+ MP Y+VV+ + Sbjct: 382 AAATTEGITGAVYQMFSHGIISALLFLLVGVLYDRTHDRMIPNYRGLISKMPAYSVVVTI 441 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL-------ASFGVVLSALYSLWLYRKV 431 A++GLPG SGFI E L+ + FQ + A + A+ G++LSA Y LW +++ Sbjct: 442 AFFASLGLPGMSGFIAEILIFIGAFQAKSITATIPQWMPLVATLGLLLSAAYYLWTLQRM 501 Query: 432 VFGVSKCE---KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 FG L D+++ E+ ++Y + L + FG++P + D +++ Sbjct: 502 FFGKFSTHMNIDRNTLTDITVYEKALLYTLCGLIILFGLFPAVLLDKIGASMAA 555 >gi|292492908|ref|YP_003528347.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus halophilus Nc4] gi|291581503|gb|ADE15960.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus halophilus Nc4] Length = 484 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 172/489 (35%), Positives = 281/489 (57%), Gaps = 13/489 (2%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCG--RRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 FLS++ P +G +I F+ + RR+ A+ ST+ I S F+ FD Sbjct: 3 FLSLIMITPVIGALLIAFTPHHKVILIRRT----AVITSTLALILSFFLLPGFDASNPQL 58 Query: 63 QMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q IE HW S Y LGVDG S+ LV+L+T L+ IL+S+ + + + Y ++ L+L Sbjct: 59 QYIELRHWNPELGSFYGLGVDGFSLPLVLLSTLLSFIAILASYH-MADRVKGYNVSMLML 117 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 E ++G F++ D LF++F+E +LIP+F +I WGG R A+ F LYT GS+FML + Sbjct: 118 EFGMLGVFMAQDWALFFLFWELTLIPLFFLIDQWGGKRRHTASLNFVLYTMGGSVFMLVS 177 Query: 182 IVVM---CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++++ E T+ ++ P Q +++ F +KIP+FP H WLP AHV+ Sbjct: 178 LLIIYTSSHEHSTTMASMSQVAAQLPLDKQILVFLGLLIGFGVKIPIFPLHGWLPLAHVE 237 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP+ S+ L+GI+LKMG YG IR + P A+ P++ L+L +IIY L++ Q+D Sbjct: 238 APSPVSILLSGILLKMGAYGIIR-ATGMLPEATLVLQPLLAGLALFSIIYGGLLAWRQSD 296 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K +IAYSSI+HMG V +GI + ++G+ GA QM++HGLV+ ALF +G++Y+R H+R+ Sbjct: 297 LKAMIAYSSISHMGIVLLGIATLNETGLLGATLQMMAHGLVAGALFLLIGLLYERTHSRE 356 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I Y LV P++A+ + +A++GLPG +GF E ++ F+ +L S GV+ Sbjct: 357 IADYSSLVQVTPKFALFTTLALLASLGLPGLAGFPAELHALIGGFERWGWWMLLVSLGVL 416 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +SA Y++ ++ G + E + +KDL E + V G+ P P + + Sbjct: 417 VSAAYAIRTIGRLFTGPVRAE-MHNVKDLHGAELASAGVLTFGIVALGLAPAPALELVAA 475 Query: 479 PLSSIIENY 487 ++++ ++ Sbjct: 476 SVANLSASF 484 >gi|11466299|ref|NP_051127.1| NADH dehydrogenase subunit 4 [Cafeteria roenbergensis] gi|6180081|gb|AAF05778.1|AF193903_1 NADH dehydrogenase subunit 4 [Cafeteria roenbergensis] Length = 453 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 163/393 (41%), Positives = 245/393 (62%), Gaps = 5/393 (1%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 +GVD +SI V+L + +L ++ S Q ++ L+L+ + GAF+ D+L F+ Sbjct: 46 IGVDSLSIWFVILNHLIIYLSLLYTF-STQNKQYGFLYCLLLLQWGIGGAFMVFDLLGFF 104 Query: 139 IFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEK-KTSSIID 196 IFFE +LIP++++I ++G ER I A+Y LYT FGSIFM F I C+ K T++ Sbjct: 105 IFFELTLIPIYLLILIYGSRERKIRASYLISLYTLFGSIFMFFNIFY-CFAKFGTTNFFV 163 Query: 197 LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 L + P ++ +WI FF +FA KIPM PFH WLP AHV+APT GSV LA ++LK+G Sbjct: 164 LMTLDFAPEDAKF-LWITFFIAFAAKIPMIPFHIWLPEAHVEAPTIGSVILAALLLKLGT 222 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 YG +RFLL LFP A+ YF+P+I +LI+I++ S+ ++ Q D+KK+IAYSSI HM V + Sbjct: 223 YGILRFLLHLFPEATLYFSPLINVFALISIVFTSMTAIRQIDLKKIIAYSSIGHMNVVLL 282 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 G+ +EG +FQMLSHG+++ ALFF VG Y R R + +GG + P A Sbjct: 283 GMLVPSVESLEGTIFQMLSHGIIAGALFFIVGAFYQRYKVRSLEYFGGFMITAPLLATFF 342 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 ++F+MAN+ PGTS FIGEF++ +F+ ++ ++AS +V A Y+LW +V FG Sbjct: 343 LIFSMANISFPGTSSFIGEFMICFGLFEYNSFAVIIASINMVTGAAYTLWALNRVNFGNL 402 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K + + D++ E + + +L + GI+P Sbjct: 403 KSQYILSYGDVNRLEFYIFCLLVILMILMGIFP 435 >gi|83589835|ref|YP_429844.1| proton-translocating NADH-quinone oxidoreductase, chain M [Moorella thermoacetica ATCC 39073] gi|83572749|gb|ABC19301.1| NADH dehydrogenase subunit M [Moorella thermoacetica ATCC 39073] Length = 509 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 161/480 (33%), Positives = 268/480 (55%), Gaps = 29/480 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFI---FSLFVWSVFDK 57 MN P L+ + P G+ +IL R + + + F+ ++ + +D Sbjct: 1 MNFPILTAIMLAPVAGLLLILL-----IPEREQLTIKITAAAATFVSLVLAILAYVQYDH 55 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 R Q ++ W+ F +Y +GVDGIS+ LV+LT + + +SW Q +E+ I Sbjct: 56 ARGGLQFLQDIPWVPGFGINYSVGVDGISMPLVLLTAIVIFTGVFASWDMTQR-VKEFFI 114 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L + V G F+S D+ FY+FFE ++IPM+++IG+WG + + YAA K LY GS Sbjct: 115 FLLMLVTGVFGVFISRDLFFFYLFFEVAVIPMYLLIGIWGSTRKEYAAMKLTLYLLVGSA 174 Query: 177 FMLFAIVVM---CWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 F L I+ + ++ + D+ ++ K+ Q +++ F + +P++P H W Sbjct: 175 FALIGIIALFLYASQQLGYATFDIQTLATVKYDLGFQKFIFFLMLIGFGVLVPIWPLHLW 234 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 P+ HV APTA S+ AG+++K+G YG IR + LFP ++++AP+I L ++ ++Y ++ Sbjct: 235 SPDGHVAAPTAVSMLHAGVLMKLGAYGLIRAGVFLFPEGAKFWAPLIAVLCIVNVVYGAM 294 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++MVQ D+K +I YSS++HMGYV +GI S ++GA+ QM +HG++++ F VG IY Sbjct: 295 IAMVQRDLKFVIGYSSVSHMGYVLLGIASLNILSLDGAVSQMFAHGIMTALFFALVGNIY 354 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT--- 408 + HTR+I +GGL H MPR A ++ +A++GLPG + F+ EFL+ + F Sbjct: 355 HKAHTREIARFGGLAHQMPRVAAGFLIGGLASLGLPGLNNFVAEFLIFIGSFTRDQALFG 414 Query: 409 -------VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 +++LA G+V++A Y L + K FG K E L+D E P+ VL Sbjct: 415 GILPFRILSILAISGIVITATYILRVVMKTFFGPRKPEW-DHLEDARGVEMV---PVVVL 470 >gi|319650853|ref|ZP_08004990.1| proton-translocating NADH-quinone oxidoreductase [Bacillus sp. 2_A_57_CT2] gi|317397451|gb|EFV78152.1| proton-translocating NADH-quinone oxidoreductase [Bacillus sp. 2_A_57_CT2] Length = 505 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 177/516 (34%), Positives = 294/516 (56%), Gaps = 36/516 (6%) Query: 1 MNLP-FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTI-NFIFSLFVWSVFDKG 58 MNL FLSI+ F P LG+ V+ S+L + + ++TI I +L + + G Sbjct: 1 MNLAYFLSILVFSPLLGILVL---SFLPKTQETLIKTVGFLATIPALILALIAYFQYRAG 57 Query: 59 RSSFQMIEYYHWIDYFCS----------YHLGVDGISILLVVLTTFLTPFCILSSWKSIQ 108 S Q+ E WI + S Y LG+DG S+++VVLT L+ ++S I+ Sbjct: 58 ASLEQLNEKVSWIQFGDSGQLGNLFSIDYELGLDGFSLIMVVLTAVLSTLAAIASIH-IK 116 Query: 109 ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFF 168 + ++ Y + FL+LE ++G F + +++LF+IFFE +LIP F +IG WG E+ AAY F Sbjct: 117 KEWKGYFMLFLLLEVGMLGVFAAENLILFFIFFEITLIPTFFLIGKWGYFEKENAAYSFL 176 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA---------MSKFPFSIQYWMWIAFFCSF 219 +Y GS +L I+V+ T++I L A ++ +++ M IA +F Sbjct: 177 IYNGLGSAVLLIVIMVLFARTGTANIDALMAAMNADNPQLVAPISENMKMGMLIALLIAF 236 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 +K+P+FP H+W+ HVQAP + + AG++LK+G +G IRF + +FP Q A + Sbjct: 237 GVKLPIFPLHSWMVRVHVQAPPSIVMLHAGVLLKIGAFGLIRFGMGIFPEQFQSIAVWLA 296 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 L ++ ++Y + ++ VQTD K ++AYSSI+HMG V IG+ + ++G++GA+FQ++SHGL+ Sbjct: 297 VLGVVNLLYGAFLAFVQTDFKMVLAYSSISHMGIVLIGLGALNEAGIQGAIFQVVSHGLI 356 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 ++ LFF VGV Y+R+ T +I GGL MP A ++ MA++GLPG SGF+ EF+ Sbjct: 357 AALLFFLVGVFYERVQTSNIQNLGGLAKGMPLTAGFLLTGAMASLGLPGMSGFVSEFMAF 416 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP-- 457 + +F+ +A + + G++++A+Y L + V G++ + ++ ++ + P Sbjct: 417 LGLFKEMPILAAVGAIGIIMTAVYLL----RAVLGITYGKALRDFAGVTDMRKFEFVPVL 472 Query: 458 -IAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTG 492 + L V G+YP S PL+S +E L G Sbjct: 473 VLVGLIVLIGVYP----SVLSEPLTSTLETIMLGIG 504 >gi|239929602|ref|ZP_04686555.1| NADH dehydrogenase subunit M [Streptomyces ghanaensis ATCC 14672] gi|291437926|ref|ZP_06577316.1| NuoM, NADH dehydrogenase subunit [Streptomyces ghanaensis ATCC 14672] gi|291340821|gb|EFE67777.1| NuoM, NADH dehydrogenase subunit [Streptomyces ghanaensis ATCC 14672] Length = 523 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 180/517 (34%), Positives = 285/517 (55%), Gaps = 31/517 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M+ P L+ LP +G RR+ +AL S + ++ V FD G Sbjct: 1 MSFPLLTATAALPAIGAIATAAVPAA---RRTAAKWLALLFSLATLVLAIVVLVRFDPGG 57 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKS---IQENFREYM 115 +Q+ E + WI D+ Y LGVDGI++ L+ LT L PF +L+ W ++ R + Sbjct: 58 DRYQLTESHAWIADFGVRYELGVDGIAVALIALTALLIPFIVLAGWHDADPVETGSRRWR 117 Query: 116 IA------FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GS 158 L +E+MVI +F + D+ LFYIFFEA LIPM+ +IG +G + Sbjct: 118 PTQGFFALILAVEAMVILSFEATDVFLFYIFFEAMLIPMYFLIGGFGDRAHEHGEKVAAT 177 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPFSI--QYWMWI 213 +R YAA KF LY G + ML A++ V+ + I + A + + W+++ Sbjct: 178 QRSYAAVKFLLYNLAGGLVMLAAVIGLYVVAGNFSLTEIAEARANGSLEMATGTERWLFL 237 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K P++P HTWLPNA ++ +V + ++ K+G + +RF L LFP AS++ Sbjct: 238 GFFFAFAVKAPLWPLHTWLPNAMQESTAPVAVLITAVVDKVGTFAMLRFCLQLFPEASKW 297 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 PVI L++I+IIY +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G GA M Sbjct: 298 ATPVILVLAVISIIYGALLAVGQRDIKRLIAYASISHFGFIVMGIFAMTSQGQSGATLYM 357 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG+ ++ L G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 358 VNHGISTAVLMLIAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFV 417 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFLV++ F + ++A+FG+VL+ALY L LY++ + G K E V + DL +RE Sbjct: 418 SEFLVLVGTFTRYPVIGIIATFGIVLAALYVLVLYQRTMTGPVKPE-VAAMPDLRVREIA 476 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 +V P+ VL VF G+YP P+ D + + + + K Sbjct: 477 VVAPLVVLLVFLGVYPKPVTDVVNPAVKQTMSDVQKK 513 >gi|50660041|gb|AAT80763.1| NADH-plastoquinone oxidoreductase subunit 4 [Huperzia lucidula] Length = 502 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 171/488 (35%), Positives = 270/488 (55%), Gaps = 27/488 (5%) Query: 2 NLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 N P+L+I+ LP G+ + L S G G + LGI + F+ + FD Sbjct: 3 NYPWLTIIVLLPIPAGLLIPLLPSPNG-GNKIIRWYTLGICLLEFLLITHTFCYHFDIDN 61 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q+ E Y+WI+ + LG+DG SI L LT F+T L++W + + R + + Sbjct: 62 PFIQLREDYNWINIIDFHWRLGIDGFSIGLTPLTGFVTTLATLAAWP-VTRSPRLFHSSM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S +G F S D+LLF++ +E LIP+++++ +WGG R+YAA KF LYT GSI + Sbjct: 121 LAMYSGQVGLFTSQDILLFFLMWELELIPVYLLLSMWGGKRRLYAATKFILYTAGGSIPL 180 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L + M +D ++ +P +++ ++++FF ++A+K+P+FP HTWLP+ H Sbjct: 181 LIGALTMGLHGFDEPTLDFQNLANRSYPIALEIVLYLSFFVAYAVKLPIFPLHTWLPDTH 240 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMGGYG IR + L P A FAP + + I+YA+ +S Q Sbjct: 241 GEAHYSTCMLLAGILLKMGGYGLIRINMELLPHAHSIFAPWLVIVGAFQIVYAASISSSQ 300 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 + K+ IAYSSI+HMG+V IGI S G+ GA+ QM+SHGL+ +A F G YDR T Sbjct: 301 RNSKRRIAYSSISHMGFVLIGIGSATNIGLNGAILQMISHGLIGAAPFSLAGTSYDRTRT 360 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TV 409 + GG+ +MP+ + F+MA++ LPGTSGF E +V + N + Sbjct: 361 PFLDQMGGIGTSMPKTFTMFSSFSMASLALPGTSGFAAESMVFPGIVSGKNYSLPFKIII 420 Query: 410 AVLASFGVVLSALYSLWLYRKVVFG----VSKCEKVQQLKDLSLRE----RCMVYPIAVL 461 ++ + G++L+ +Y L + R++ +G VS + D RE C++ P Sbjct: 421 TIVEAIGIILTPIYLLSMLRQMFYGYFNKVSNLS-ISHAMDSGPREIFISICLLLP---- 475 Query: 462 TVFFGIYP 469 T+ G+YP Sbjct: 476 TIGIGLYP 483 >gi|182436765|ref|YP_001824484.1| NADH dehydrogenase subunit M [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777360|ref|ZP_08236625.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces cf. griseus XylebKG-1] gi|178465281|dbj|BAG19801.1| putative NADH dehydrogenase chain M [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657693|gb|EGE42539.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces cf. griseus XylebKG-1] Length = 523 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 176/517 (34%), Positives = 282/517 (54%), Gaps = 31/517 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M+ P L+ LP +G RR+ +AL S + + V+ F+ G Sbjct: 1 MSFPLLTATAALPAIGAIATAAVPAA---RRTAAKWLALFFSLGTLVLAAVVFLRFEPGG 57 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSW------KSIQENFR 112 +Q+ E WI D+ Y LGVDGI + L+ LT L PF I++ W ++ +R Sbjct: 58 DRYQLTESRAWIADFGVRYELGVDGIGVALLGLTALLIPFVIVAGWHDADPLETKSSRWR 117 Query: 113 EYMIAF---LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GS 158 F L++E+MVI +F++ D+ LFYI FEA LIPM+ +IG +G + Sbjct: 118 PTQGFFALVLMVEAMVILSFVATDVFLFYILFEAMLIPMYFLIGGFGDRAHAGTDENAAT 177 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPF--SIQYWMWI 213 +R YAA KF LY G + ML A++ V+ S I + A S + W+++ Sbjct: 178 QRSYAAVKFLLYNLAGGLIMLAAVIGLYVVAGSFSLSEIAEARANGSLEMATSTERWLFL 237 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K P++P HTWLPNA +A +V + I+ K+G + +RF L LFP AS++ Sbjct: 238 GFFFAFAVKAPLWPLHTWLPNAMGEATAPVAVLITAIVDKVGTFAMLRFCLGLFPEASKW 297 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 PV+ L+LI+I+Y +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G GA M Sbjct: 298 ATPVVITLALISIVYGALLAVGQRDIKRLIAYASISHFGFIILGIFAMTSQGQSGATLYM 357 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG+ ++AL G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 358 VNHGISTAALLLVAGFLITRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFV 417 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFLV++ F V+A+ G+VL+ALY L LY++ + G + E V+ + DL RE Sbjct: 418 SEFLVLVGTFSAYPVAGVIATSGIVLAALYVLVLYQRTMTGPVR-ESVRSMPDLRARELA 476 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 + P+ + +F G++P P+ + + + + + K Sbjct: 477 VALPLIAVLIFLGVFPKPLTEVVNPAVEHTMSDVQKK 513 >gi|239943488|ref|ZP_04695425.1| NADH dehydrogenase subunit M [Streptomyces roseosporus NRRL 15998] gi|239989942|ref|ZP_04710606.1| NADH dehydrogenase subunit M [Streptomyces roseosporus NRRL 11379] gi|291446959|ref|ZP_06586349.1| NADH dehydrogenase subunit M [Streptomyces roseosporus NRRL 15998] gi|291349906|gb|EFE76810.1| NADH dehydrogenase subunit M [Streptomyces roseosporus NRRL 15998] Length = 523 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 175/517 (33%), Positives = 282/517 (54%), Gaps = 31/517 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M+ P L+ LP +G RR+ +AL S + + V+ F+ G Sbjct: 1 MSFPLLTATAALPAIGAIATAAVPAA---RRTAAKWLALLFSLGTLVLAAVVFLRFEPGG 57 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSW--------KSIQ-E 109 +Q+ E WI D+ Y LGVDGI + L+ LT L PF I++ W KS + Sbjct: 58 DRYQLTESRAWIADFGVRYELGVDGIGVALLGLTALLIPFVIVAGWHDADPLETKSTRWR 117 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GS 158 + + L++E+MVI +F++ D+ LFYI FEA LIPM+ +IG +G + Sbjct: 118 PTQGFFALILMVEAMVILSFVATDVFLFYILFEAMLIPMYFLIGGFGDRAHAGTDESAAT 177 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPF--SIQYWMWI 213 +R YAA KF LY G + ML A++ V+ S I + A S + W+++ Sbjct: 178 QRSYAAVKFLLYNLAGGLIMLAAVIGLYVVAGSFSLSEIAEARANGSLEMATSTERWLFL 237 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K P++P HTWLPNA +A +V + I+ K+G + +RF L LFP AS++ Sbjct: 238 GFFFAFAVKAPLWPLHTWLPNAMGEATAPVAVLITAIVDKVGTFAMLRFCLGLFPEASKW 297 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 PV+ L+LI+I+Y +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G GA M Sbjct: 298 ATPVVITLALISIVYGALLAVGQRDIKRLIAYASISHFGFIILGIFAMTSQGQSGATLYM 357 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG+ ++AL G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 358 VNHGISTAALLLVAGFLITRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFV 417 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFLV++ F ++A+ G+VL+ALY L LY++ + G + E V+ + DL RE Sbjct: 418 SEFLVLVGTFSAYPVAGIIATSGIVLAALYVLVLYQRTMTGPVR-ESVRSMPDLRARELA 476 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 + P+ + +F G++P P+ + + + + + K Sbjct: 477 VAVPLIAVLIFLGVFPKPLTEVVNPAVEHTMSDVQKK 513 >gi|127707434|ref|YP_209567.2| NADH dehydrogenase subunit 4 [Huperzia lucidula] gi|68052480|sp|Q5SCZ6|NU4C_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 502 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 171/488 (35%), Positives = 270/488 (55%), Gaps = 27/488 (5%) Query: 2 NLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 N P+L+I+ LP G+ + L S G G + LGI + F+ + FD Sbjct: 3 NYPWLTIIVLLPIPAGLLIPLLPSPNG-GNKIIRWYTLGICLLEFLLITHTFCYHFDIDN 61 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q+ E Y+WI+ + LG+DG SI L LT F+T L++W + + R + + Sbjct: 62 PFIQLREDYNWINIIDFHWRLGIDGFSIGLTPLTGFVTTLATLAAWP-VTRSPRLFHSSM 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S +G F S D+LLF++ +E LIP+++++ +WGG R+YAA KF LYT GSI + Sbjct: 121 LAMYSGQVGLFTSQDILLFFLMWELELIPVYLLLSMWGGKRRLYAATKFILYTAGGSIPL 180 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L + M +D ++ +P +++ ++++FF ++A+K+P+FP HTWLP+ H Sbjct: 181 LIGALTMGLHGFDEPTLDFQNLANRSYPIALEIVLYLSFFVAYAVKLPIFPLHTWLPDTH 240 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMGGYG IR + L P A FAP + + I+YA+ +S Q Sbjct: 241 GEAHYSTCMLLAGILLKMGGYGLIRINMELLPHAHSIFAPWLVIVGAFQIVYAASISSSQ 300 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 + K+ IAYSSI+HMG+V IGI S G+ GA+ QM+SHGL+ +A F G YDR T Sbjct: 301 RNSKRRIAYSSISHMGFVLIGIGSATNIGLNGAILQMISHGLIGAAPFSLAGTSYDRTRT 360 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TV 409 + GG+ +MP+ + F+MA++ LPGTSGF E +V + N + Sbjct: 361 PFLDQMGGIGTSMPKTFTMFSSFSMASLALPGTSGFAAESMVFPGIVSGKNYSLPFKIII 420 Query: 410 AVLASFGVVLSALYSLWLYRKVVFG----VSKCEKVQQLKDLSLRE----RCMVYPIAVL 461 ++ + G++L+ +Y L + R++ +G VS + D RE C++ P Sbjct: 421 TIVEAIGIILTPIYLLSMLRQMFYGYFNKVSNLS-ISHAMDSGPREIFISICLLLP---- 475 Query: 462 TVFFGIYP 469 T+ G+YP Sbjct: 476 TIGIGLYP 483 >gi|226327871|ref|ZP_03803389.1| hypothetical protein PROPEN_01752 [Proteus penneri ATCC 35198] gi|225203575|gb|EEG85929.1| hypothetical protein PROPEN_01752 [Proteus penneri ATCC 35198] Length = 485 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 153/406 (37%), Positives = 242/406 (59%), Gaps = 26/406 (6%) Query: 69 HWIDYF---------CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 W +YF + +DG+S+L+ VLT L +LSSW Q + + L Sbjct: 62 RWTEYFFVPWIPSLGINIQFALDGMSLLMAVLTAVLGILAVLSSWSENQPSQGAFHFNLL 121 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG--GSE---RIYAAYKFFLYTFFG 174 + + V+G FL+ D+ LF+ F+E LIPM+ +I +WG GS + AA KFF+YT Sbjct: 122 WILAGVMGVFLATDLFLFFFFWEMMLIPMYFLISLWGHKGSSDKAHVSAATKFFIYTQAS 181 Query: 175 SIFMLFAIVVMC---------WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPM 225 + ML AI+ + W ++ L A + +Q+ + + FF +FA+K+P+ Sbjct: 182 GLLMLLAIIGLAVAFYRETGIWTFSYDTL--LQAHTVLGTELQFILMLGFFAAFAVKMPI 239 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 P H WL +AH +APTAGSV L+GI+LK YG +RF LPLFP AS APV +L LI Sbjct: 240 VPVHGWLADAHAEAPTAGSVDLSGILLKTAAYGLLRFNLPLFPEASALLAPVAMWLGLIT 299 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 + YA+L++ QTDIK+L AYSSI+HMG++ I I++G +GA+ QM+++GL ++ LF Sbjct: 300 VFYAALLAFRQTDIKRLAAYSSISHMGFIVIAIYAGSVLAYQGAIIQMITNGLSAAGLFI 359 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 G++Y+RL TRD+ GGL ++ + F +A++G+PGT F+GEF+++ + N Sbjct: 360 MCGMLYERLGTRDMNQMGGLWKSIRFLPAFSLFFAVASLGMPGTGNFVGEFMILFGTYGN 419 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 + +++ FG+V +++Y+LW+ ++ +G K + + K L LRE Sbjct: 420 FKLITIISVFGLVFASVYALWMMQQAYYGSPKTAE-RTYKGLDLRE 464 >gi|37519788|ref|NP_923165.1| NAD(P)H-quinone oxidoreductase subunit 4 [Gloeobacter violaceus PCC 7421] gi|81834498|sp|Q7NP39|NU4C_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|35210779|dbj|BAC88160.1| NADH dehydrogenase subunit 4 [Gloeobacter violaceus PCC 7421] Length = 526 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 171/489 (34%), Positives = 280/489 (57%), Gaps = 24/489 (4%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRSSF 62 P+L+++ LP + + SF + ++F+ + + + +D Sbjct: 6 PWLTVIILLPLVAALAVPLIPEKQVKWYSF-----AVCLVDFVLMVAAFFTSYDLSNPDI 60 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y W+ + +G DG+S+ L++LT F+T L++W R M FL+L Sbjct: 61 QLAERYRWMPQIGLEWSVGADGLSMPLILLTGFITALATLAAWPV---TLRPRMFHFLML 117 Query: 122 ESM--VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + ++G F DM+LF++FFE L+P+++++ +WGG R+YAA KF LYT GS+F+L Sbjct: 118 AMLAGMVGVFAVQDMVLFFLFFELELVPVYLMLAIWGGKGRLYAATKFILYTAVGSLFIL 177 Query: 180 FAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + M + + +T ++++L A + P + Q ++ ++A+K+P+FP HTWLP+AH Sbjct: 178 VVGLAMYFYGDLRTFNMVELAAKNYDP-TFQNLCFLGLLIAYAVKLPIFPLHTWLPDAHG 236 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY IR + FP A+Q FAP++ L ++ IIYA+L S Q Sbjct: 237 EATAPVHMLLAGILLKMGGYALIRMNVGFFPEATQLFAPLLIVLGIVNIIYAALTSFGQR 296 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IG+ S + G+ GAM QM+SHGL+ ++LFF VG YDR HT Sbjct: 297 NLKRKIAYSSISHMGFVLIGVGSLSEIGMGGAMLQMISHGLIGASLFFLVGATYDRTHTL 356 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV-------FQNSNTVA 410 + GG+ MP+ + +MA++ LPG SGF+ E +V + + FQ V Sbjct: 357 ILSEMGGIAPKMPKIFAMFTACSMASLALPGMSGFVAELMVFVGMATTDAYSFQFKALVV 416 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGIY 468 + A+FGV+L+ +Y L + R++ +G V + L D RE ++ + V G+Y Sbjct: 417 LFAAFGVILTPIYLLSMLREIFYGTLNHAVVHEEDLVDAEPREVFIIASLLVPIFGIGLY 476 Query: 469 PVPIRDTFS 477 P D ++ Sbjct: 477 PKLTTDLYA 485 >gi|161485767|ref|NP_681508.2| NAD(P)H-quinone oxidoreductase subunit 4 [Thermosynechococcus elongatus BP-1] gi|193806310|sp|Q8DKY0|NU4C1_THEEB RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 1; AltName: Full=NAD(P)H dehydrogenase I, chain 4 1; AltName: Full=NDH-1, chain 4 1 Length = 529 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 170/500 (34%), Positives = 268/500 (53%), Gaps = 23/500 (4%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVF-DKGRSSF 62 P+L+ + P + I F R AL + I+F ++ ++ F D Sbjct: 5 PWLTTIILFPIVAALAIPFIPDPTGKGRPIRWYALAVGLIDFALIVYAFTNFYDLNTPGM 64 Query: 63 QMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI + + +G DG+S+ L++LT F+T IL++W + R + L + Sbjct: 65 QLWESYDWIPEIGLRWSVGADGLSMPLILLTGFITTLAILAAWP-VTLKPRLFYFLMLAM 123 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 I F DML+F++ +E LIP+++++ +WGG +R YAA KF LYT S+F+L A Sbjct: 124 YGGQIAVFAVQDMLVFFLAWELELIPVYLLLAIWGGHKRQYAATKFILYTAGSSLFILVA 183 Query: 182 IVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + M + T S + A + Q ++ F ++ +K+P+ P HTWLP+AH +A Sbjct: 184 GLAMAFYGDTVSFDMQTLAAKDYALGFQLLVYAGFLVAYGVKLPIVPLHTWLPDAHGEAT 243 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + LAGI+LKMGGY IR + + P A FAPV+ L ++ IIYA+L S Q ++K Sbjct: 244 APVHMLLAGILLKMGGYALIRMNVDMLPAAHAKFAPVLVILGVVNIIYAALTSYAQRNLK 303 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 + IAYSSI+H+G+V IGI S G+ GA+ QM+SHGL+ ++LFF VG YDR HT + Sbjct: 304 RKIAYSSISHIGFVLIGIASFTNLGMSGAVLQMVSHGLIGASLFFLVGATYDRTHTLILE 363 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT--------VAVL 412 GG+ M + + ++A++ LPG SGF+ E +V + F S+ V L Sbjct: 364 EMGGVGQKMKKIFAMFTACSLASLALPGMSGFVAELMVFIG-FATSDAYSLPFRVIVVFL 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLTVFFG 466 A+ GV+L+ +Y L + R++ +G E V+ L D RE C++ PI + G Sbjct: 423 AAVGVILTPIYLLSMLREIFYGPENKELVEHEALVDAEPREVFIIACLLVPI----IGIG 478 Query: 467 IYPVPIRDTFSVPLSSIIEN 486 +YP + + +I Sbjct: 479 LYPKLLTQIYDATTGQVIAR 498 >gi|11467867|ref|NP_050918.1| NADH dehydrogenase subunit 4 [Nephroselmis olivacea] gi|17433146|sp|Q9TKV8|NU4C_NEPOL RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|5880796|gb|AAD54889.1|AF137379_112 subunit 4 of NADH-plastoquinoneoxidoreductase [Nephroselmis olivacea] Length = 500 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 166/484 (34%), Positives = 271/484 (55%), Gaps = 25/484 (5%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVF-DKGR 59 + P+LS + P L I G R + ALG+ I+F +++ + D + Sbjct: 3 HFPWLSTIVLFPLLASLAIPWLPDRKGTTVRWY---ALGVGLIDFSLIAYMFGRYYDFEQ 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 +S Q +E WID + LGVDG+S+ LV+LT F+T L++W + +N R + Sbjct: 60 TSLQFVEDITWIDRLHLHWSLGVDGLSMPLVLLTGFITTLATLAAWP-VTKNPRLFYFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + + +G F+ D+LLF++ +E LIP+++++ WGG +R+YAA KF LYT GSIF+ Sbjct: 119 LAMYTGQLGVFVVQDLLLFFLMWELELIPVYLLVSCWGGKKRLYAATKFILYTALGSIFI 178 Query: 179 LFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L + M + D+ ++ ++ ++ ++ F ++ +K+P P HTWLP+ H Sbjct: 179 LLGALTMPFMGIQGVTFDMSTLAYREYSLPVEILLYTGFLIAYGVKLPAIPVHTWLPDTH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMGGY IR + + P A F+P + + ++ IIYA+L S Q Sbjct: 239 GEAHYSTCMLLAGILLKMGGYALIRINMNMLPHAHALFSPWLIGVGVVNIIYAALTSFAQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSS++HMG+V IGI S ++G+ GAM QM+SHGL+ ++LFF G YDR T Sbjct: 299 RNLKRKIAYSSVSHMGFVLIGIGSLSEAGLNGAMLQMISHGLIGASLFFLAGTTYDRTRT 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NTV 409 + GGL MP+ + ++A++ LPG SGF E LV + + + + Sbjct: 359 LVLEEMGGLATFMPKTFALFTACSLASLALPGMSGFFAELLVFLGLVTSEAYSPTFRAIM 418 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE----RCMVYPIAVLTVFF 465 V + G++L+ +Y L + R++ +G S + + L D RE C++ PI + Sbjct: 419 TVFEAIGILLTPIYLLSMLRQLFYGRS-IGRPKALIDAGPREVFVVSCLLVPI----LGI 473 Query: 466 GIYP 469 GIYP Sbjct: 474 GIYP 477 >gi|53804542|ref|YP_113809.1| NADH dehydrogenase I, M subunit [Methylococcus capsulatus str. Bath] gi|53758303|gb|AAU92594.1| NADH dehydrogenase I, M subunit [Methylococcus capsulatus str. Bath] Length = 489 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 160/409 (39%), Positives = 258/409 (63%), Gaps = 11/409 (2%) Query: 68 YHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI 126 + WI F HL +DG+S+LL+ LT FL +L SW I+E + L + VI Sbjct: 62 WAWIPRFGIRIHLALDGLSLLLIALTVFLGFVAVLCSWTEIRERQGFFHFNLLWTLAGVI 121 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT-FFGSIFMLFAIVVM 185 G FL+LD+ LF+ F+E LIPM+++IG+WG R YAA KFF++T G + ++ + ++ Sbjct: 122 GVFLALDLFLFFFFWEVMLIPMYLLIGIWGHENRAYAAMKFFIFTQVSGLLMLIAILALV 181 Query: 186 CWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 +T+ + +L +P + + W+ + FF +F +K+P PFHTWLP+AH QAP Sbjct: 182 FLHYQTTRTLSFDYFELLEADLYPGAAR-WIMLGFFVAFTVKLPAVPFHTWLPDAHTQAP 240 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T GSV LAG++LK G YG +RF++PLFP A+Q FAP L ++I+YA+ ++ QTD+K Sbjct: 241 TGGSVLLAGVLLKTGAYGLLRFVIPLFPGAAQDFAPFAMTLGAVSILYAAKLAFAQTDLK 300 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 +LIAY+S++HMG++ +G F+G ++GA+ ML+HG+ ++ALF G + +RLHTRD+ Sbjct: 301 RLIAYTSVSHMGFMLLGAFAGNTQALQGAVMTMLAHGVSAAALFMVAGALQERLHTRDMD 360 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 A GGL PR + + F++A +G+PG F+GEFLV++ F+ + A+ G++L+ Sbjct: 361 AMGGLWTLTPRIGAITLFFSVAALGMPGLGNFVGEFLVLLGSFRVDTVLTAFAALGLILA 420 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +Y+L++ + G + +V +D LRE ++ +A T + G++P Sbjct: 421 PVYALYVMQWAFHGPASRHEV---RDFGLREMGVMLCLAAATAWMGLHP 466 >gi|162148243|ref|YP_001602704.1| NADH-quinone oxidoreductase subunit M [Gluconacetobacter diazotrophicus PAl 5] gi|209542883|ref|YP_002275112.1| proton-translocating NADH-quinone oxidoreductase subunit M [Gluconacetobacter diazotrophicus PAl 5] gi|161786820|emb|CAP56403.1| putative NADH-quinone oxidoreductase chain M [Gluconacetobacter diazotrophicus PAl 5] gi|209530560|gb|ACI50497.1| proton-translocating NADH-quinone oxidoreductase, chain M [Gluconacetobacter diazotrophicus PAl 5] Length = 493 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 152/399 (38%), Positives = 243/399 (60%), Gaps = 5/399 (1%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIF 140 +DG+ ++++ LT L+ C+L + + I + + L + V G F++ D+ LF+ F Sbjct: 83 LDGLGLVMLWLTVVLSWPCVLLASRDIGPGAGVFHLLLLATVAGVDGVFIATDLFLFFFF 142 Query: 141 FEASLIPMFVIIGVWGGSERIYAAYKFFLYT---FFGSIFMLFAIVVMCWEKKTSSIIDL 197 +E L+P++V+I WG +R AA KFFL+T + + + + + + D Sbjct: 143 WELMLVPLYVLITGWGHEDRARAAIKFFLFTQGSGLLMLLSILGLAIAHFRQTGVLTFDY 202 Query: 198 YAMSKFPFSIQYWMWIA--FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 +A++ + + +A FF +FA+K+P+ P H WLP+ H QAPTAGSV LAG++LK G Sbjct: 203 FALAGTMLAPGVALALASGFFVAFAVKLPVVPLHVWLPDTHTQAPTAGSVLLAGVLLKTG 262 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 GYG IRF+ LFP A+ AP+ L + ++Y ++ ++VQ D+K+LIAYSS++H+G+V Sbjct: 263 GYGLIRFVALLFPDAASRLAPLALVLGVAGVLYGAMQALVQDDLKRLIAYSSVSHLGFVL 322 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 +G+FSG G+EGA+ QML+HGL + ALF G + DRLHTRD+ GGL MP + + Sbjct: 323 MGVFSGSALGMEGAVVQMLAHGLSTGALFVIAGALQDRLHTRDLRRMGGLWAVMPHLSAM 382 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 +VF +A++GLPG F+GEFLV+++ ++ S +AVLA+ G+VLSALY L + + G Sbjct: 383 GLVFAVASLGLPGLGNFVGEFLVLLATWRISPLLAVLAASGLVLSALYGLTMVSRAFQGP 442 Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + V+ D R ++ L + G+ P P+ D Sbjct: 443 LPVDGVRGAGDFGARHMAVLGGTVALLIGLGLCPQPVLD 481 >gi|15789842|ref|NP_279666.1| F420H2:quinone oxidoreductase subunit M [Halobacterium sp. NRC-1] gi|169235563|ref|YP_001688763.1| NADH dehydrogenase-like complex subunit M [Halobacterium salinarum R1] gi|10580236|gb|AAG19146.1| F420H2:quinone oxidoreductase chain M [Halobacterium sp. NRC-1] gi|167726629|emb|CAP13414.1| NADH dehydrogenase-like complex subunit M [Halobacterium salinarum R1] Length = 519 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 155/437 (35%), Positives = 255/437 (58%), Gaps = 23/437 (5%) Query: 53 SVFDKGRSSFQMIEYYHWID---YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE 109 ++ + G +F+ + HWI Y ++H+G+DGIS+ LVVL+T LT I S+W I E Sbjct: 53 ALLEGGSLAFETMT--HWITIGPYTLNWHVGIDGISMPLVVLSTVLTTLAITSAWTPIDE 110 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFL 169 ++ L++E+ ++G F +LD ++++F+E L+PM+ +IG+WGG R YAA KFF+ Sbjct: 111 RQSQFYALMLLMEASLLGVFTALDFFVWFVFWEFVLVPMYFLIGIWGGPRRKYAAIKFFV 170 Query: 170 YTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM-------------WIAFF 216 YT S+ M + + + +++ D+ A+++ + Q+ + A F Sbjct: 171 YTNVASLLMFIGFMALVFGLDVTTM-DMPAIAQAIHAGQFGTTYGLGAETLKTVAFFAMF 229 Query: 217 CSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAP 276 FA+K+P P HTWLP+AHVQAPT SV LAG++LKMG Y +RF + P +Q +A Sbjct: 230 IGFAVKVPTVPLHTWLPDAHVQAPTPASVMLAGVLLKMGTYALLRFNFTMMPGIAQQYAV 289 Query: 277 VIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSH 336 I L+++++IY +++++ Q D+K+++AYSS++ MGYV +G+ + GV GA FQM++H Sbjct: 290 PIAALAVLSVIYGAMLALAQRDLKRIVAYSSVSSMGYVILGLVAYNYYGVGGATFQMVAH 349 Query: 337 GLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEF 396 GL+S +F CVGVIY+ HTR + G+ MP A V + MGLP +GF GE Sbjct: 350 GLISGLMFMCVGVIYNTAHTRMVGDLSGIADKMPVTAAVFIAAAFGYMGLPLMAGFAGEL 409 Query: 397 LVIM----SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 + + + F ++ LA FG+V+ A Y L+ ++V+FG E + +L + Sbjct: 410 FIFLGGFGADFAHAQLFTALAMFGIVIVAGYLLFAMQRVLFGPFAAETDYDIVPAALHDT 469 Query: 453 CMVYPIAVLTVFFGIYP 469 + + +L + G P Sbjct: 470 VPIVALLLLVIVAGTVP 486 >gi|33240517|ref|NP_875459.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238045|gb|AAQ00112.1| NAD(P)H-quinone oxidoreductase NdhD subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 523 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 167/495 (33%), Positives = 274/495 (55%), Gaps = 15/495 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFF-GVALGISTINFIFSLFVWS-VFDKGRSS 61 P+LS++ LP + +I F F +A+G+ +F+ LFV S +F S Sbjct: 16 PWLSLIVLLPAVSALIIQFLPQKQDESPDLFRNIAIGVLAFDFLIILFVLSQLFTSQSSD 75 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+IE W+ + LGVDGIS LV L+ +T +SWK I + Y L+ Sbjct: 76 LQLIERTTWLPSIGLEWSLGVDGISAPLVALSGLITLLSATASWK-ITNKPKLYFSLLLI 134 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 S FLS D LLF++ +E L+P++++I +WGG +R+YAA KF LYT S+ +L Sbjct: 135 QASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGRKRLYAATKFILYTALASLLILV 194 Query: 181 A--IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + T ++ +L A S + ++ F F +K+P+FP HTWLP+AH + Sbjct: 195 SGLALALSGDSFTLNLSELTARST-SGTFGLLCYLGFLIGFGVKLPIFPLHTWLPDAHGE 253 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A S+ LAGI+LKMGGY IRF + +FP +P + + ++ IIY +L + Q + Sbjct: 254 ANAPVSMLLAGILLKMGGYALIRFNVQMFPEIHIQLSPALIVIGIVNIIYGALNAFAQDN 313 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+R +T Sbjct: 314 VKRRIACSSVSHMGFVLLGIGAINTLGINGAMLQMISHGLIAAAMFFITGSFYERTNTLS 373 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVAVL 412 I GGL +P + + ++A++ LPG SGF+ E + + + ++++L Sbjct: 374 IPNMGGLAKALPITFALFLTSSLASLALPGMSGFVSEITIFLGITSQDAFTSIFRSISIL 433 Query: 413 -ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 A+ G+VL+ +Y L + R+V FG + + +++++ RE + + V T+F G +P Sbjct: 434 IAAIGLVLTPVYLLSMCRRVFFG-PRIPALAMVEEMNSRELLIALSLLVPTLFIGFWPRI 492 Query: 472 IRDTFSVPLSSIIEN 486 D F +I N Sbjct: 493 ATDLFETSTDAIASN 507 >gi|298489748|ref|YP_003719925.1| proton-translocating NADH-quinone oxidoreductase subunit M ['Nostoc azollae' 0708] gi|298231666|gb|ADI62802.1| proton-translocating NADH-quinone oxidoreductase, chain M ['Nostoc azollae' 0708] Length = 524 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 163/456 (35%), Positives = 257/456 (56%), Gaps = 29/456 (6%) Query: 52 WSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN 110 ++ +D Q++E Y W+ ++ +G DG+S+ L++LT F+T +L++W Sbjct: 54 YTGYDFSNPDLQLVESYPWVPQLGLNWSVGADGLSMPLILLTGFITTLAVLAAWPI---T 110 Query: 111 FREYMIAFLVLE--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFF 168 + + FL+L I F DMLLF++ +E L+P++ ++ +WGG +R YAA KF Sbjct: 111 LKPKLFYFLILAMYGGQIAVFAVQDMLLFFLVWELELVPIYFLLSIWGGKKRQYAATKFI 170 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFP 227 LYT GS+F+L + + M + T + + A+ F ++Q ++ F ++A+K+P+ P Sbjct: 171 LYTAGGSLFILLSALTMGFYGDTVTFDMRAIALKDFGLNLQLLLYAGFLIAYAVKLPIIP 230 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 HTWLP+AH +A + LAGI+LKMGGY IR + P A Y AP + L ++ II Sbjct: 231 LHTWLPDAHGEATAPVHMLLAGILLKMGGYALIRMNAEMLPDAHAYIAPALVVLGVVNII 290 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 YA+L S Q ++K+ IAYSSI+HMG+V IGI S G+ GAM QM+SHGL+ ++LFF V Sbjct: 291 YAALTSFAQRNLKRKIAYSSISHMGFVLIGIASFTDLGLSGAMLQMVSHGLIGASLFFLV 350 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 G YDR HT + GG+ M + + +MA++ LPG SGF+ E +V + F S+ Sbjct: 351 GATYDRTHTLMLDEMGGVGKKMRKIFAMFTTCSMASLALPGMSGFVAELMVFVG-FATSD 409 Query: 408 T--------VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRE----RC 453 + L + GV+L+ +Y L + R++ +G E V Q L D RE C Sbjct: 410 AYNPTFKVIIIFLMAVGVILTPIYLLSMLREIFYGQENEELVSHQALIDAEPREVFIIAC 469 Query: 454 MVYPIAVLTVFFGIYP---VPIRDTFSVPLSSIIEN 486 ++ PI + G YP I D +V L++ + + Sbjct: 470 LLIPI----IGIGFYPKLLTQIYDATTVQLTARLRD 501 >gi|212640509|ref|YP_002317029.1| NADH dehydrogenase subunit M [Anoxybacillus flavithermus WK1] gi|212561989|gb|ACJ35044.1| NADH dehydrogenase subunit M [Anoxybacillus flavithermus WK1] Length = 503 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 164/502 (32%), Positives = 280/502 (55%), Gaps = 30/502 (5%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 FLS++ F P LG+ V+ + GV + ++ SLF + + G ++ Sbjct: 5 FLSLLIFSPLLGILVLSLFPKEQEKAIKWLGVLATLPSL--CLSLFAFWQYRNGYDISKL 62 Query: 65 IEYYHWI-----------DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 E WI D+ +Y L VDG +++++VLTT L ++S SIQ+ ++ Sbjct: 63 SEKRSWIQFGDFPFLKETDFTVAYELHVDGFALVMIVLTTILATLAAIAS-TSIQKEWKG 121 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y FL+LE ++G F + +++LF+IFFE +LIPMF +IG WG E+ AAY + +Y Sbjct: 122 YFQLFLLLEIGMLGVFAASNLVLFFIFFELTLIPMFFLIGKWGYFEKEKAAYSYLIYNGL 181 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDL---------YAMSKFPFSIQYWMWIAFFCSFAIKIP 224 GS +L I V+ TS+I +L +S ++Y +++A +F +K+P Sbjct: 182 GSAVLLIVIAVLFARTGTSNIAELRYILTNSSVQTISPISDDLRYGLFLALLVAFGVKLP 241 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + P H W+ HVQAP + + AG++LK+G +G +R LFP Q F+ + L ++ Sbjct: 242 IVPLHRWMLRVHVQAPPSVVMLHAGVLLKIGAFGLVRLAFGLFPGQFQQFSTWLIVLGIV 301 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 ++Y + +++ QTD K ++AYSS++HMG + IG+ S ++G++GA+FQ +SHG +++ LF Sbjct: 302 NLLYGAFLALRQTDFKMVLAYSSVSHMGIILIGLGSLNEAGIQGAIFQAVSHGFIAAFLF 361 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 F VGV+Y+R T + GG+ MP + M+ MA++GLPGTSGF+ EF+ + FQ Sbjct: 362 FFVGVMYERTRTTTLARLGGMAKTMPYVSGFMLAGAMASLGLPGTSGFVSEFMAFVGAFQ 421 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + +A + + G++++A+Y L + FG + V+ L+ + E + +L + Sbjct: 422 AAPWLAAIGTLGIIMTAVYLLRAVLHMTFGQTAVTNVRDLRGI---EWVPAISLLLLIII 478 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G+YP ++PL + IE Sbjct: 479 IGVYP----SILAMPLQTTIET 496 >gi|94676530|ref|YP_588814.1| proton-translocating NADH-quinone oxidoreductase, chain M [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219680|gb|ABF13839.1| proton-translocating NADH-quinone oxidoreductase, chain M [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 507 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 162/432 (37%), Positives = 257/432 (59%), Gaps = 16/432 (3%) Query: 65 IEY-YHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 IEY WI F S HL +DG+SIL+VVLT L +L SW I+ + + L + Sbjct: 65 IEYLRRWIPRFGISIHLTLDGLSILMVVLTNLLGVLAVLCSWPEIKRYQGLFYLNLLWIS 124 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE-----RIYAAYKFFLYTFFGSIF 177 S +IG F+++D+ LF+ F+E L+PM+ +I +WG E RI A KF +YT Sbjct: 125 SSIIGVFMAVDLFLFFCFWEMMLVPMYFLIVLWGHKESNRKTRISIANKFVIYTQASGFI 184 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFS-----IQYWMWIAFFCSFAIKIPMFPFHTWL 232 ML +I+ + T++ + + F+ +Y + + FF +FAIK+P+ P H WL Sbjct: 185 MLVSILGLVAAHYTTTGVWTFNYDDLLFTPMSEKTEYLLMLGFFLAFAIKMPIIPLHGWL 244 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+ H APTAGSV LAGI++K YG +RF LPLFP AS FAP+ + +++I Y + Sbjct: 245 PDVHSNAPTAGSVDLAGILIKTAAYGLLRFSLPLFPQASYKFAPIAMWFGVVSIFYGAWT 304 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q DIK+LIAY++I+HMG + I I+SG +G + Q++++ L ++ LF G +Y+ Sbjct: 305 AFAQIDIKRLIAYANISHMGIILIAIYSGQLLAFQGVVVQIIANSLSAAGLFIICGQLYE 364 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 RLHTRD+ GGL + V + F +A +GLP T F+GE +++ S FQ + V+ Sbjct: 365 RLHTRDMRLMGGLWGRLNFLPAVTLFFALAMLGLPATGTFVGEIIILFSCFQVVPIITVI 424 Query: 413 ASFGVVLSALYSLWLYRKVVFG-VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 ++F ++ SA+YSL + ++ +G V C Q L ++++RE+ ++ + +L + GI P P Sbjct: 425 SAFSLIFSAIYSLMMMQRTYYGPVKSC---QPLANITIREQFIIILLVILLLLLGIVPQP 481 Query: 472 IRDTFSVPLSSI 483 I +T + ++SI Sbjct: 482 IMNTSATAINSI 493 >gi|227494515|ref|ZP_03924831.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] gi|226832249|gb|EEH64632.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] Length = 514 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 173/490 (35%), Positives = 282/490 (57%), Gaps = 17/490 (3%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD-KGRSS 61 P LS++ LP L GV V+ GR +AL +ST+ + +L + D +++ Sbjct: 10 PVLSLLIALPALAGVLVLAVKPLRIAGRW----IALSVSTLEIVLALSAAFMIDWSAKAT 65 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE-----YM 115 +Q+ E Y WI S+ LGV +S+ +++L L P +L++W EN RE Y Sbjct: 66 YQLAETYTWIPQLGISWALGVTQLSLAMILLAVALVPIVLLAAWNEDAENAREGKAGKYA 125 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L+LE+ ++ F + D+ +FY FEA LIP++ +IG +G + AA KF LY+ G Sbjct: 126 ALILILEAFMVLIFSARDVAVFYFAFEAMLIPLYFMIGNFGRNNAKAAAVKFLLYSLAGG 185 Query: 176 IFMLFAIVVM---CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 + ML ++ + + + +I+ A + P +++ +++ FF +FAIK PM P HTWL Sbjct: 186 LVMLVGVITLYVYADRQAGTFLIENLAQLQLPAAVEMGVFVTFFIAFAIKAPMVPVHTWL 245 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+ A SV L G++ K+G YG I LPLFP AS A VI +LI++IY +L Sbjct: 246 PDTAAAARPGTSVLLVGVLDKIGTYGMIALCLPLFPHASVEAATVIIIFALISVIYGALA 305 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q DI +L++++S++H G++ +GI+ G + GAMF M++HG+ +A+F G + D Sbjct: 306 AIGQKDIMRLVSFTSVSHFGFMVLGIYIGSTVALTGAMFYMVAHGVSIAAMFLISGFLSD 365 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R HT++I AY G+ P A +V +A++ LPG SGF+ E+LV++ ++ S A + Sbjct: 366 RGHTQEISAYRGMQRVTPVLAGTWLVSGLASVALPGLSGFVPEYLVLIGTYKVSPAAAAV 425 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A FGVVL+ALY L Y+++ G +K + DL+LRE+ +V P+ V GI+ P+ Sbjct: 426 AVFGVVLAALYLLMPYQRMFTGPVPADK-DKYTDLNLREKVVVAPLLVAMAVLGIWAAPL 484 Query: 473 RDTFSVPLSS 482 + + P+S Sbjct: 485 VNALN-PVSD 493 >gi|284049849|ref|ZP_06380059.1| NAD(P)H-quinone oxidoreductase subunit D4 [Arthrospira platensis str. Paraca] gi|291569858|dbj|BAI92130.1| NADH dehydrogenase subunit 4 [Arthrospira platensis NIES-39] Length = 505 Score = 276 bits (707), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 170/477 (35%), Positives = 263/477 (55%), Gaps = 20/477 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLG--CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS++ ++P L +I+ L R+ A G+ ++SL + +FD + Q Sbjct: 2 LSVLIWIPLLAALLIVIWPNLSPQLSRQISLLTAGGL----LVWSLTLARLFDPTVADLQ 57 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 M+E+ WI +Y+LGVDG+S+ LV++ L I SS I R Y L++ Sbjct: 58 MVEHITWIQPLGLNYYLGVDGLSLPLVIINALLVAIAIWSSDLDISRP-RLYYPLLLIIF 116 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + V G FLS ++LLF +F+E LIP++++I +WGG R YAA KF LYT + +L A Sbjct: 117 AGVAGTFLSSNLLLFILFYEVELIPLYLLIAIWGGKNRGYAATKFLLYTAVSGLLILAAF 176 Query: 183 VVMCWEKKTSSIIDLYAM-------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 + + W K DL + S P + Q + F IKIP+ PFHTWLP+A Sbjct: 177 LGIVWLTKAPDF-DLDTLRTSALGVSALPLTTQLILLGGLVIGFGIKIPVVPFHTWLPDA 235 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+A T SV LAG++LK+G YG +RF + LFP A AP + ++++++Y + ++ Sbjct: 236 HVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWNAIAPYVASWAVVSVLYGASCAIS 295 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q DIKK++AYSSIAHMGY+ + + + G++ QM+SHGL+S+ LF VGV+Y + Sbjct: 296 QKDIKKMVAYSSIAHMGYIILAFAAASPLSLLGSVMQMVSHGLISALLFLTVGVVYKKSG 355 Query: 356 TRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 +RDI GL++ +P +M++ MA+ G+PG GF+ EF+V + +L Sbjct: 356 SRDIDVIRGLLNPERGLPLIGSIMILAVMASAGIPGLVGFVSEFIVFRGSIEVFPVQTLL 415 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G L+++Y L + + FG E V L + R+R +AV+ F GI P Sbjct: 416 CMVGTGLTSVYFLIMINRAFFG-RLSESVINLPRVQWRDRIPAIALAVIITFLGIQP 471 >gi|110637775|ref|YP_677982.1| NADH dehydrogenase I subunit M [Cytophaga hutchinsonii ATCC 33406] gi|110280456|gb|ABG58642.1| NADH dehydrogenase subunit M [Cytophaga hutchinsonii ATCC 33406] Length = 487 Score = 276 bits (707), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 170/484 (35%), Positives = 292/484 (60%), Gaps = 13/484 (2%) Query: 7 SIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS-SFQMI 65 +++ F P + ++ + G+R + + + I F +F + FD +++++ Sbjct: 4 TLLIFFPLVAALIVFIA-----GQRMAPAIGIIATLIEFALGIFAYVNFDAAAGWNYEIV 58 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 WI +Y +G+DGIS+ LV+LTTFL P +L+S +N + + + L+++S Sbjct: 59 --LPWISTLNINYAVGMDGISLALVLLTTFLLPLILLASLSGSLKNKKGFYVLALIMQSA 116 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 +IG F S D+ LFYIF+E +LIP++ I +WG R + +KFF+YT FGS+ ML AI+ Sbjct: 117 LIGVFTSKDLFLFYIFWELALIPIYFICLLWGDENRKFVTFKFFIYTLFGSLIMLAAIIY 176 Query: 185 M--CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + K+ ++ ++Y S Q W++ A F +F IK+P+FP HTW P+ + AP A Sbjct: 177 LYSVAPVKSFAMENIYNTS-LTTCEQVWIFAALFLAFGIKMPVFPLHTWQPSTYTSAPVA 235 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 G++ L+GIMLKMG YG IR++LP+ P A + + L++I IIYAS++++ Q++ K L Sbjct: 236 GTMLLSGIMLKMGIYGVIRWILPVLPTALMDWGWLAMLLAIIGIIYASIIAIKQSNYKTL 295 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAY SIAH+G + G+F+ G++G + QML+HG+ + F V ++ +R T +I Sbjct: 296 IAYVSIAHVGLIAAGLFTNSVEGLQGVIAQMLAHGVNVVGILFVVEILLNRTGTLEIAKL 355 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGL + MP++AV +V MA++ LP T+GF+GEFL+ + +F + +A +A ++L A+ Sbjct: 356 GGLRNQMPQFAVFFVVIMMASIALPSTNGFVGEFLLFVGIFNINPYLAAVAGITIILGAV 415 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y L Y+K++ G ++ E + DL+L E+ ++ PI ++ G++P I D ++ Sbjct: 416 YMLSSYQKIMLGEARSEY-DGVVDLTLLEKSILIPIVIVIFVLGLFPNLILDLTEPAVNG 474 Query: 483 IIEN 486 I+ + Sbjct: 475 ILHS 478 >gi|116073952|ref|ZP_01471214.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. RS9916] gi|116069257|gb|EAU75009.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. RS9916] Length = 556 Score = 276 bits (707), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 172/504 (34%), Positives = 279/504 (55%), Gaps = 27/504 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 ++P+LS+ P +G ++ F G G++ + ALGI+ I F+ ++ + +D S Sbjct: 27 DVPWLSLSILFPIVGALIVPFIPDKGEGKQVRW-FALGIALITFLITVGAYLDGYDPSIS 85 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E W+ D ++ +G DG+S+ L++LT+F+T +L++W F+ + FL Sbjct: 86 GLQLAERVSWLPDLGLTWAVGADGLSMPLILLTSFITALAVLAAWPV---TFKPKLFFFL 142 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L + I F DMLLF++ +E L+P+++++ +WGG +R YAA KF LYT S+F Sbjct: 143 ILAMDGGQIAVFAVQDMLLFFLAWELELLPVYLLLAIWGGKKRQYAATKFILYTAGSSLF 202 Query: 178 MLFAIVVMCWEKKTSSIID--LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L A + M + + + + A F Q + +F +K+P+ P HTWLP+A Sbjct: 203 ILLAALAMGFFGGGTPNFEYSVLAQKGFGHGFQLLCYAGLLIAFGVKLPIVPLHTWLPDA 262 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY +RF + P A FAP++ L ++ IIYA+L S Sbjct: 263 HGEATAPVHMLLAGILLKMGGYALLRFNAEMLPEAHAQFAPLLVVLGVVNIIYAALTSFA 322 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR H Sbjct: 323 QRNLKRKIAYSSISHMGFVLIGIGSFSDLGTSGAMLQMISHGLIGASLFFLVGATYDRTH 382 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG+ M + V ++A++ LPG SGF+ E +V + Sbjct: 383 TLQLDEMGGVGQKMRIMFALWTVCSLASLALPGMSGFVSELMVFAGFATDEAYSLTFRIV 442 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLT 462 + LA+ GV+L+ +Y L + R++ FG + V L D RE C++ PI Sbjct: 443 IDGLAAVGVILTPIYLLSMLREIFFGKENNDLVSHTNLVDAEPREVYVIGCLLVPI---- 498 Query: 463 VFFGIYPVPIRDTFSVPLSSIIEN 486 + G+YP + D++ + +++ Sbjct: 499 IGIGLYPKLMTDSYRSSIEALVNR 522 >gi|113954548|ref|YP_731802.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. CC9311] gi|123327566|sp|Q0I6X0|NU4C_SYNS3 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|113881899|gb|ABI46857.1| NADH dehydrogenase I chain 4 (or M) [Synechococcus sp. CC9311] Length = 558 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 173/502 (34%), Positives = 282/502 (56%), Gaps = 27/502 (5%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRSSF 62 P+LS+ P +G F++ F G G++ + ALGI+ F+ + + + +D S Sbjct: 26 PWLSLSILFPIVGAFIVPFVPDDGDGKQVRW-FALGIALTTFLITAAAYLTGYDPSYSGL 84 Query: 63 QMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E W+ + ++ +G DG+S+ L++LT+F+T +L++W F+ + FL+L Sbjct: 85 QLSERVSWLPNLGLTWAVGADGLSMPLILLTSFITALAVLAAWPV---TFKPKLFFFLIL 141 Query: 122 --ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + I F DMLLF++ +E L+P+++++ +WGG +R YAA KF LYT S+F+L Sbjct: 142 AMDGGQIAVFAVQDMLLFFLAWELELLPVYLLLAIWGGKKRQYAATKFILYTAGSSLFIL 201 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM--WIAFFCSFAIKIPMFPFHTWLPNAHV 237 A + M + + +++ FS + + + +F +K+P+ P HTWLP+AH Sbjct: 202 LAALAMGFFGGGVPNFEYSVLAQKGFSTGFELLCYAGLLIAFGVKLPIVPLHTWLPDAHG 261 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +RF + P+A FAP++ L ++ IIYA+L S Q Sbjct: 262 EATAPVHMLLAGILLKMGGYALMRFNAEILPVAHAQFAPLLVVLGVVNIIYAALTSFAQR 321 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IGI S + G GAM QM+SHGL+ ++LFF VG YDR HT Sbjct: 322 NLKRKIAYSSISHMGFVLIGIGSFSELGTSGAMLQMISHGLIGASLFFLVGATYDRTHTL 381 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ M + V +A++ LPG SGF+ E +V + + Sbjct: 382 QLDEMGGIGQKMRIMFALWTVCCLASLALPGMSGFVSELMVFAGFATDEAYTLSFRIVID 441 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLTVF 464 LA+ GV+L+ +Y L + R++ FG E V L D RE C++ PI + Sbjct: 442 GLAAIGVILTPIYLLSMLREIFFGKENSELVSHSNLVDSEPREVYIIGCLLVPI----IG 497 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G+YP + D++S +S+++ Sbjct: 498 IGLYPKLMTDSYSNTISALVRR 519 >gi|240169658|ref|ZP_04748317.1| NADH dehydrogenase subunit M [Mycobacterium kansasii ATCC 12478] Length = 542 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 189/531 (35%), Positives = 291/531 (54%), Gaps = 48/531 (9%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRR--SFFGVALGISTINFIFSLFVWSVFDKG 58 N +LS + +P G V +IL L RR + GV + ++T+ S+ V + F G Sbjct: 3 NFAWLSTLWLVPLAGSVLIILLPPGL---RRLAKWTGVIVSVATLAV--SVVVATGFKPG 57 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW------------- 104 FQ +E + WI F Y LGVDGI+++LV+LTT L P +++ W Sbjct: 58 GEPFQFVEKHSWIPAFGAGYTLGVDGIAVVLVLLTTVLIPLLLVAGWNDGDGGDPQRPAS 117 Query: 105 ---KSIQENFR-----EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG 156 +S + R Y+ L +ESMV+ + ++LD+LLFY+FFEA LIPM+ +IG +G Sbjct: 118 PSLRSSRSGERTRGVHAYVALTLAIESMVLISLVALDVLLFYVFFEAMLIPMYFLIGGFG 177 Query: 157 -GSERIYAAYKFFLYTFFGSIFMLFAIVVM--CWEKKTSSIIDLYAMSKFPFSIQYW--- 210 G R AA KF LY FG + ML A++ + + D + S +Y Sbjct: 178 QGPGRSRAAVKFLLYNLFGGLIMLAAVIGLYVVTAQHGPGTFDFREIVAGVASGRYGIDP 237 Query: 211 -----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 +++ F +FA+K P++PFH WLP+A V++ A +V + +M K+G +G +R+ L Sbjct: 238 AVFKALFLGFMFAFAVKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQ 297 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 LFP AS YF P+I L++I +IY ++V++ QTDI +LIAY+SI+H G++ GIF G Sbjct: 298 LFPDASTYFRPLIVTLAIIGVIYGAVVAIGQTDIMRLIAYTSISHFGFIIAGIFVMTTQG 357 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 G+ ML+HGL ++A+F G + R +R I YGG+ P A +V MA + Sbjct: 358 QSGSTLYMLNHGLSTAAVFLIAGFLISRHGSRSIADYGGVQKVAPILAGTFLVSAMATLS 417 Query: 386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG-VSKCEKVQQL 444 LPG + F+ EFLV++ + A +VLSA+Y LWLY++V+ G V+K +++ Sbjct: 418 LPGLAPFVSEFLVLLGTYNRYWLAAAFGVTALVLSAIYMLWLYQRVMTGPVAKGN--ERI 475 Query: 445 KDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 DL RE +V P+ L + G+YP P+ D ++ +EN G D Sbjct: 476 GDLVPREMIVVAPLIALLLVLGVYPKPMLDL----INPAVENTMTTIGQHD 522 >gi|326567944|gb|EGE18041.1| NADH dehydrogenase subunit M [Moraxella catarrhalis BC1] Length = 575 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 170/442 (38%), Positives = 258/442 (58%), Gaps = 15/442 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F +HL +DG+S+L++ LT FL + SW IQ + + L VIG Sbjct: 83 WIPSFGIKFHLAMDGLSLLMIALTAFLGIMAVGCSWGEIQRRVGFFHLNLLWSLGGVIGV 142 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYT-FFGSIFMLFAI 182 FL++D+ LF+ F+E L+P++ +I +WG G + YAA KFF+YT G I ++ + Sbjct: 143 FLAIDLFLFFFFWELMLLPIYFLIALWGHNATGGKSKEYAATKFFIYTQASGLIMLIGIL 202 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMW---IAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + ++ ++ W + + FF FA+K+P+FP H WLP+AH QA Sbjct: 203 LLVIIQFSQTGVLSFDYHDLLGVNLGDWEYAIMLCFFIGFAVKLPIFPLHGWLPDAHAQA 262 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAGI++K +G +RF++PLFP AS FAPV L +I + Y + ++ QTDI Sbjct: 263 PTAGSVDLAGILIKTAAFGLLRFVIPLFPNASAQFAPVAITLGMIGVFYGAFLAFAQTDI 322 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+L+AY+S++HMG+V + I++G ++G M QML+HGL S+ALF G IY+RLHTRD+ Sbjct: 323 KRLLAYTSVSHMGFVVLAIYAGTLVSLQGLMVQMLAHGLSSAALFIMAGQIYERLHTRDM 382 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GG+ R A MM F A +G+PGT FIGE L+++ F LA+ +V+ Sbjct: 383 TVMGGMWGQFRRLAPFMMFFCAALLGIPGTGNFIGEILILIGAFAIHPIFVTLATVSLVM 442 Query: 420 SALYSLWLYRKVVFGVSKC-EKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + LYSL + +FG + E V+Q LKDL RE ++ +A+ V+ G+YP P+ D Sbjct: 443 AGLYSLMIIYHALFGQNTTLELVKQNHGTLKDLGKRELVLLLSLAIGLVWLGLYPQPVMD 502 Query: 475 TFSVPLSSIIENYTLKTGYSDS 496 + I Y +D Sbjct: 503 KSEGSMQWIASAYAHDVIMADE 524 >gi|296112943|ref|YP_003626881.1| NADH-quinone oxidoreductase subunit M [Moraxella catarrhalis RH4] gi|295920637|gb|ADG60988.1| NADH-quinone oxidoreductase subunit M [Moraxella catarrhalis RH4] gi|326561167|gb|EGE11532.1| NADH dehydrogenase subunit M [Moraxella catarrhalis 7169] gi|326567645|gb|EGE17753.1| NADH dehydrogenase subunit M [Moraxella catarrhalis 12P80B1] gi|326574018|gb|EGE23967.1| NADH dehydrogenase subunit M [Moraxella catarrhalis CO72] Length = 575 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 170/442 (38%), Positives = 258/442 (58%), Gaps = 15/442 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F +HL +DG+S+L++ LT FL + SW IQ + + L VIG Sbjct: 83 WIPSFGIKFHLAMDGLSLLMIALTAFLGIMAVGCSWGEIQRRVGFFHLNLLWSLGGVIGV 142 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYT-FFGSIFMLFAI 182 FL++D+ LF+ F+E L+P++ +I +WG G + YAA KFF+YT G I ++ + Sbjct: 143 FLAIDLFLFFFFWELMLLPIYFLIALWGHNATGGKSKEYAATKFFIYTQASGLIMLIGIL 202 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMW---IAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + ++ ++ W + + FF FA+K+P+FP H WLP+AH QA Sbjct: 203 LLVIIQFSQTGVLSFDYHDLLGVNLGDWEYAIMLCFFIGFAVKLPIFPLHGWLPDAHAQA 262 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAGI++K +G +RF++PLFP AS FAPV L +I + Y + ++ QTDI Sbjct: 263 PTAGSVDLAGILIKTAAFGLLRFVIPLFPNASAQFAPVAITLGMIGVFYGAFLAFAQTDI 322 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+L+AY+S++HMG+V + I++G ++G M QML+HGL S+ALF G IY+RLHTRD+ Sbjct: 323 KRLLAYTSVSHMGFVVLAIYAGTLVSLQGLMVQMLAHGLSSAALFIMAGQIYERLHTRDM 382 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GG+ R A MM F A +G+PGT FIGE L+++ F LA+ +V+ Sbjct: 383 TVMGGMWGQFRRLAPFMMFFCAALLGIPGTGNFIGEILILIGAFAIHPIFVTLATVSLVM 442 Query: 420 SALYSLWLYRKVVFGVSKC-EKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + LYSL + +FG + E V+Q LKDL RE ++ +A+ V+ G+YP P+ D Sbjct: 443 AGLYSLMIIYHALFGQNTTLELVKQNHGTLKDLGKRELVLLLSLAIGLVWLGLYPQPVMD 502 Query: 475 TFSVPLSSIIENYTLKTGYSDS 496 + I Y +D Sbjct: 503 KSEGSMQWIASAYAHDVIMADE 524 >gi|226227056|ref|YP_002761162.1| NADH-quinone oxidoreductase chain M [Gemmatimonas aurantiaca T-27] gi|226090247|dbj|BAH38692.1| NADH-quinone oxidoreductase chain M [Gemmatimonas aurantiaca T-27] Length = 521 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 160/440 (36%), Positives = 257/440 (58%), Gaps = 9/440 (2%) Query: 52 WSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN 110 W VFD +Q W+ D + LGVDG+S+ +VVLT F+ P +L SW +++ Sbjct: 68 WGVFDVDGRGWQARVDIPWLADLGATLSLGVDGLSLPMVVLTAFVVPLALLGSWNNVRVR 127 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + L+L S ++G F++LD+L FY+ +E LIP ++++GVWG + A+ ++ L+ Sbjct: 128 TPAFGALLLLLTSGLVGVFITLDLLAFYLAWELMLIPTYLLVGVWGAAGTSRASLRYVLF 187 Query: 171 TFFGSIFMLFAIVVMCWEKK--TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS+ ML AI+ + W TS ID Q WM++AFF +FA+K + PF Sbjct: 188 TLVGSLLMLVAIIAL-WNAGGGTSLHIDHLLQVALSPRAQLWMFLAFFAAFAVKSALVPF 246 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA--PVIFFLSLIAI 286 HTWLP+A APT +V L LK+G Y +RF +PLFP A+ + I LS+IA+ Sbjct: 247 HTWLPDAQSAAPTVAAVTLG---LKVGAYAILRFAIPLFPAAAMDYTVRSTILVLSVIAV 303 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 +Y +LV+M Q D K++I+YSS++H+G + +G F V+GA+ ++S G+ ++ALF Sbjct: 304 VYGALVAMAQRDFKRVISYSSVSHLGLIMLGSFVLTPQSVQGAVMSIVSSGIATTALFLL 363 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 G++ DR T A+GGL +P ++V ++V ++ + LPGT GF+GEFLV++ + Sbjct: 364 AGMLEDRRATTAFSAFGGLAKVLPWFSVALIVSMLSTVALPGTIGFVGEFLVLIGTYAEF 423 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 +AV+A+ GV+ +A+Y L ++++F E L DLS RER ++ + V+ G Sbjct: 424 PVLAVIATSGVIFAAVYGLRAVQQLLFEKVDTEANGALPDLSGRERFVMVTLVAAMVYLG 483 Query: 467 IYPVPIRDTFSVPLSSIIEN 486 + P I ++IE+ Sbjct: 484 VAPHAILQRADRASQALIES 503 >gi|326572762|gb|EGE22748.1| NADH dehydrogenase subunit M [Moraxella catarrhalis BC7] Length = 575 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 169/434 (38%), Positives = 256/434 (58%), Gaps = 15/434 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F +HL +DG+S+L++ LT FL + SW IQ + + L VIG Sbjct: 83 WIPSFGIKFHLAMDGLSLLMIALTAFLGIMAVGCSWGEIQRRVGFFHLNLLWSLGGVIGV 142 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYT-FFGSIFMLFAI 182 FL++D+ LF+ F+E L+P++ +I +WG G + YAA KFF+YT G I ++ + Sbjct: 143 FLAIDLFLFFFFWELMLLPIYFLIALWGHNATGGKSKEYAATKFFIYTQASGLIMLIGIL 202 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMW---IAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + ++ ++ W + + FF FA+K+P+FP H WLP+AH QA Sbjct: 203 LLVIIQFSQTGVLSFDYHDLLGVNLGDWEYAIMLCFFIGFAVKLPIFPLHGWLPDAHAQA 262 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAGI++K +G +RF++PLFP AS FAPV L +I + Y + ++ QTDI Sbjct: 263 PTAGSVDLAGILIKTAAFGLLRFVIPLFPNASAQFAPVAITLGMIGVFYGAFLAFAQTDI 322 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+L+AY+S++HMG+V + I++G ++G M QML+HGL S+ALF G IY+RLHTRD+ Sbjct: 323 KRLLAYTSVSHMGFVVLAIYAGTLVSLQGLMVQMLAHGLSSAALFIMAGQIYERLHTRDM 382 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GG+ R A MM F A +G+PGT FIGE L+++ F LA+ +V+ Sbjct: 383 TVMGGMWGQFRRLAPFMMFFCAALLGIPGTGNFIGEILILIGAFAIHPIFVTLATVSLVM 442 Query: 420 SALYSLWLYRKVVFGVSKC-EKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + LYSL + +FG + E V+Q LKDL RE ++ +A+ V+ G+YP P+ D Sbjct: 443 AGLYSLMIIYHALFGQNTTLELVKQNHGTLKDLGKRELVLLLSLAIGLVWLGLYPQPVMD 502 Query: 475 TFSVPLSSIIENYT 488 + I Y Sbjct: 503 KSEGSMQWIASAYA 516 >gi|326569475|gb|EGE19535.1| NADH dehydrogenase subunit M [Moraxella catarrhalis BC8] Length = 575 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 170/442 (38%), Positives = 258/442 (58%), Gaps = 15/442 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F +HL +DG+S+L++ LT FL + SW IQ + + L VIG Sbjct: 83 WIPSFGIKFHLAMDGLSLLMIALTAFLGIMAVGCSWGEIQRRVGFFHLNLLWSLGGVIGV 142 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYT-FFGSIFMLFAI 182 FL++D+ LF+ F+E L+P++ +I +WG G + YAA KFF+YT G I ++ + Sbjct: 143 FLAIDLFLFFFFWELMLLPIYFLIALWGHNATGGKSKEYAATKFFIYTQASGLIMLIGIL 202 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMW---IAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + ++ ++ W + + FF FA+K+P+FP H WLP+AH QA Sbjct: 203 LLVIIQFSQTGVLSFDYHDLLGVNLGDWEYAIMLCFFIGFAVKLPIFPLHGWLPDAHAQA 262 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAGI++K +G +RF++PLFP AS FAPV L +I + Y + ++ QTDI Sbjct: 263 PTAGSVDLAGILIKTAAFGLLRFVIPLFPNASAQFAPVAITLGMIGVFYGAFLAFAQTDI 322 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+L+AY+S++HMG+V + I++G ++G M QML+HGL S+ALF G IY+RLHTRD+ Sbjct: 323 KRLLAYTSVSHMGFVVLAIYAGTLVSLQGLMVQMLAHGLSSAALFIMAGQIYERLHTRDM 382 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GG+ R A MM F A +G+PGT FIGE L+++ F LA+ +V+ Sbjct: 383 TVMGGMWGQFRRLAPFMMFFCAALLGIPGTGNFIGEILILIGAFAIHPIFVTLATVSLVM 442 Query: 420 SALYSLWLYRKVVFGVSKC-EKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + LYSL + +FG + E V+Q LKDL RE ++ +A+ V+ G+YP P+ D Sbjct: 443 AGLYSLMIIYHALFGQNTTLELVKQNHGTLKDLGKRELVLLLSLAIGLVWLGLYPQPVMD 502 Query: 475 TFSVPLSSIIENYTLKTGYSDS 496 + I Y +D Sbjct: 503 KSEGSMQWIASAYAHDVIMADE 524 >gi|326562851|gb|EGE13139.1| NADH dehydrogenase subunit M [Moraxella catarrhalis 103P14B1] gi|326577014|gb|EGE26909.1| NADH dehydrogenase subunit M [Moraxella catarrhalis 101P30B1] Length = 575 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 170/442 (38%), Positives = 258/442 (58%), Gaps = 15/442 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F +HL +DG+S+L++ LT FL + SW IQ + + L VIG Sbjct: 83 WIPSFGIKFHLAMDGLSLLMIALTAFLGIMAVGCSWGEIQRRVGFFHLNLLWSLGGVIGV 142 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYT-FFGSIFMLFAI 182 FL++D+ LF+ F+E L+P++ +I +WG G + YAA KFF+YT G I ++ + Sbjct: 143 FLAIDLFLFFFFWELMLLPIYFLIALWGHNATGGKSKEYAATKFFIYTQASGLIMLIGIL 202 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMW---IAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + ++ ++ W + + FF FA+K+P+FP H WLP+AH QA Sbjct: 203 LLVIIQFSQTGVLSFDYHDLLGVNLGDWEYAIMLCFFIGFAVKLPIFPLHGWLPDAHAQA 262 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAGI++K +G +RF++PLFP AS FAPV L +I + Y + ++ QTDI Sbjct: 263 PTAGSVDLAGILIKTAAFGLLRFVIPLFPNASAQFAPVAITLGMIGVFYGAFLAFAQTDI 322 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+L+AY+S++HMG+V + I++G ++G M QML+HGL S+ALF G IY+RLHTRD+ Sbjct: 323 KRLLAYTSVSHMGFVVLAIYAGTLVSLQGLMVQMLAHGLSSAALFIMAGQIYERLHTRDM 382 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GG+ R A MM F A +G+PGT FIGE L+++ F LA+ +V+ Sbjct: 383 TVMGGMWGQFRRLAPFMMFFCAALLGIPGTGNFIGEILILIGAFAIHPIFVTLATVSLVM 442 Query: 420 SALYSLWLYRKVVFGVSKC-EKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + LYSL + +FG + E V+Q LKDL RE ++ +A+ V+ G+YP P+ D Sbjct: 443 AGLYSLMIIYHALFGQNTTLELVKQNHGTLKDLGKRELVLLLSLAIGLVWLGLYPQPVMD 502 Query: 475 TFSVPLSSIIENYTLKTGYSDS 496 + I Y +D Sbjct: 503 KSEGSMQWIASAYAHDVIMADE 524 >gi|297201634|ref|ZP_06919031.1| NADH dehydrogenase subunit M [Streptomyces sviceus ATCC 29083] gi|197710994|gb|EDY55028.1| NADH dehydrogenase subunit M [Streptomyces sviceus ATCC 29083] Length = 523 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 179/523 (34%), Positives = 287/523 (54%), Gaps = 43/523 (8%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGR 59 M+ P L+ LP +G RR+ +AL +S ++ V FD Sbjct: 1 MSFPLLTATAVLPAIGAIATAAVPAA---RRTAAKWLALLVSIATLALAIVVLVRFDPDG 57 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ------ENFR 112 + +Q+ E + WI D+ Y LGVDGI + L+ LT L PF IL+ W + +R Sbjct: 58 ARYQLTESHAWIADFGVRYELGVDGIGVALLALTALLIPFIILAGWHDADPLETGSKRWR 117 Query: 113 E---YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GS 158 + L +E+MVI +F + D+ LFYIFFEA LIPM+ +IG +G + Sbjct: 118 PTQGFFALILGVEAMVIISFEATDVFLFYIFFEAMLIPMYFLIGGFGDRAHAGSDENAAA 177 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVM-----------CWEKKTSSIIDLYAMSKFPFSI 207 +R YAA KF LY G + ML A++ + E + + +D+ + Sbjct: 178 QRSYAAVKFLLYNLVGGLIMLAAVIGLYVVAGNFSLQEIAEARANGTLDMAT------NT 231 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 + W+++ FF +FA+K P++P HTWLPNA +A +V + ++ K+G + +RF L LF Sbjct: 232 ERWLFLGFFFAFAVKAPLWPLHTWLPNAMGEATAPVAVLITAVVDKVGTFAMLRFCLQLF 291 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P AS++ P I L++I+IIY +L+++ Q DIK+L+AY+SI+H G++ +GIF+ G Sbjct: 292 PEASKWATPAILVLAVISIIYGALLAVGQRDIKRLVAYASISHFGFIIMGIFAMTSQGQS 351 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 GA M++HG+ ++AL G + R +R I YGG+ P A ++ +A + LP Sbjct: 352 GATLYMVNHGISTAALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLP 411 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDL 447 G + F+ EFLV++ F + ++A+FG+VL+ALY+L LY++ + G K E V + DL Sbjct: 412 GLAPFVSEFLVLVGTFARYPVIGIIATFGIVLAALYTLVLYQRTMTGPVKPE-VSAMPDL 470 Query: 448 SLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 +RE +V P+ VL +F G+YP P+ D + + S + + K Sbjct: 471 RVRELVVVAPLVVLLIFLGVYPKPVTDIVNPAVKSTMSDVHKK 513 >gi|326577460|gb|EGE27344.1| NADH dehydrogenase subunit M [Moraxella catarrhalis O35E] Length = 575 Score = 276 bits (705), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 170/442 (38%), Positives = 258/442 (58%), Gaps = 15/442 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F +HL +DG+S+L++ LT FL + SW IQ + + L VIG Sbjct: 83 WIPSFGIKFHLAMDGLSLLMIALTAFLGIMAVGCSWGEIQRRVGFFHLNLLWSLGGVIGV 142 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYT-FFGSIFMLFAI 182 FL++D+ LF+ F+E L+P++ +I +WG G + YAA KFF+YT G I ++ + Sbjct: 143 FLAIDLFLFFFFWELMLLPIYFLIALWGHNATGGKSKEYAATKFFIYTQASGLIMLIGIL 202 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMW---IAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + ++ ++ W + + FF FA+K+P+FP H WLP+AH QA Sbjct: 203 LLVIIQFSQTGVLSFDYHDLLGVNLGDWEYAIMLCFFIGFAVKLPIFPLHGWLPDAHAQA 262 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAGI++K +G +RF++PLFP AS FAPV L +I + Y + ++ QTDI Sbjct: 263 PTAGSVDLAGILIKTAAFGLLRFVIPLFPNASAQFAPVAITLGMIGVFYGAFLAFAQTDI 322 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+L+AY+S++HMG+V + I++G ++G M QML+HGL S+ALF G IY+RLHTRD+ Sbjct: 323 KRLLAYTSVSHMGFVVLAIYAGTLVSLQGLMVQMLAHGLSSAALFIMAGQIYERLHTRDM 382 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GG+ R A MM F A +G+PGT FIGE L+++ F LA+ +V+ Sbjct: 383 TVMGGMWGQFRRLAPFMMFFCAALLGIPGTGNFIGEILILIGAFAIHPIFVTLATVSLVM 442 Query: 420 SALYSLWLYRKVVFGVSKC-EKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + LYSL + +FG + E V+Q LKDL RE ++ +A+ V+ G+YP P+ D Sbjct: 443 AGLYSLMVIYHALFGQNTTLELVKQNHGTLKDLGKRELVLLLSLAIGLVWLGLYPQPVMD 502 Query: 475 TFSVPLSSIIENYTLKTGYSDS 496 + I Y +D Sbjct: 503 KSEGSMQWIASAYAHDVIMADE 524 >gi|257061637|ref|YP_003139525.1| NAD(P)H-quinone oxidoreductase subunit 4 [Cyanothece sp. PCC 8802] gi|256591803|gb|ACV02690.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 8802] Length = 560 Score = 276 bits (705), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 155/413 (37%), Positives = 245/413 (59%), Gaps = 14/413 (3%) Query: 37 ALGISTINFIFSLFV-WSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 ALG+ +FI +V W+ +D +FQ+ E Y W+ S+ + VDGIS+ LV+L Sbjct: 38 ALGVGLADFILMCYVFWNNYDISNPTFQLTEKYAWLPQIGLSWAVSVDGISMPLVLLAGL 97 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T I ++W+ + + + L+L S IG F++ D+LL +I +E L+P+++++ + Sbjct: 98 VTTLSIFAAWQ-VDRKPKLFYFLMLLLYSAQIGVFVAQDLLLLFIMWELELVPVYLLVSI 156 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC---WEKKTSSIIDLYAMSKFPFSIQYWM 211 WGG +R YAA KF LYT SIF+L A + M + T I++L A +P +++ + Sbjct: 157 WGGQKRRYAAMKFLLYTAAASIFILIAALAMGIYGGGQMTFDIVEL-AAKNYPLALELPL 215 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 + +F +K+ +FP HTWLP+AH +A + S+ LAG++LKMG YG IR L + A Sbjct: 216 YAGLLIAFGVKLAIFPLHTWLPDAHGEASSPVSMILAGVLLKMGAYGLIRLNLEMLSDAH 275 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 YFAP++ L +I I+Y S Q+++K+ +AYSS++HMG+V IGI S G+ GAM Sbjct: 276 VYFAPILVVLGVINIVYGGFASFAQSNMKRRLAYSSVSHMGFVLIGIASFSDIGISGAML 335 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 Q++SHGL+++ LFF GV YDR HT + G + MP+ + + MA++ LPG SG Sbjct: 336 QLISHGLIAAVLFFLAGVTYDRTHTMLLDEMGDIGQVMPKVFALFTIGAMASLALPGMSG 395 Query: 392 FIGEFLVIMSVFQNS------NTVAV-LASFGVVLSALYSLWLYRKVVFGVSK 437 F E V + V TV V LA+ G++L+ +Y L + R++ +G K Sbjct: 396 FASEISVFVGVTSGDVYSSVFRTVTVFLAAVGLILTPIYLLSMLRQLFYGSDK 448 >gi|312139320|ref|YP_004006656.1| NADH dehydrogenase (quinone) chain m nuom [Rhodococcus equi 103S] gi|311888659|emb|CBH47971.1| NADH dehydrogenase (quinone) chain M NuoM [Rhodococcus equi 103S] Length = 526 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 157/446 (35%), Positives = 260/446 (58%), Gaps = 24/446 (5%) Query: 55 FDKGRSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--- 110 F+ +Q +E + WI F + Y LG+DGI++ LV+LT L P +L+ W+ + + Sbjct: 54 FEPAGERYQFVESHSWIPAFGTRYELGLDGIALALVLLTAILVPLLLLAGWRDVPADDAR 113 Query: 111 ---FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG--GSERIYAAY 165 Y+ LV+ESMV+ +FL+LD+LLFY+ FEA LIPM+ +IG +G G R AA Sbjct: 114 PRGTHAYVALILVVESMVLMSFLALDILLFYVLFEAMLIPMYFLIGGYGQPGPGRSRAAV 173 Query: 166 KFFLYTFFGSIFMLFAI----VVMCWEKKT--------SSIIDLYAMSKFPFS--IQYWM 211 KF LY G + ML A+ VV +I+D + + S + + Sbjct: 174 KFLLYNLLGGLIMLAAVIGLYVVTAGADSPFTSGTFDFRAIVDAVSTGELTMSGPVANAL 233 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 ++ F +FA+K P++P H+WLP+A VQ+ +V + ++ K+G + +R+ L LFP A+ Sbjct: 234 FLGFMFAFAVKAPLWPLHSWLPDAAVQSTPVTAVLMMAVVDKVGTFAMLRYCLQLFPDAA 293 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 QYFAP++ L++++I+Y +L+++ QTD+ +LIAY+SI+H G++ +G+F+ G G+ Sbjct: 294 QYFAPLVVTLAVVSIVYGALLAIGQTDVMRLIAYTSISHFGFIVLGVFAMTSQGQSGSTL 353 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 M++HG ++AL G + R TR I YGG+ P A ++ +A + LPG + Sbjct: 354 YMVNHGFSTAALMLVAGFLVTRRGTRVIADYGGVQKVAPLLAGTFLIAGLATLSLPGLAP 413 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 F+ EFLV++ + AV+A+ +VL+ALY LWLY++++ G +++DL RE Sbjct: 414 FVSEFLVLIGTYTRYPAAAVVATVALVLAALYVLWLYQRMMTG-PVASGTDRIRDLRRRE 472 Query: 452 RCMVYPIAVLTVFFGIYPVPIRDTFS 477 +V P+ L + G+YP P+ D + Sbjct: 473 LVVVTPLIALLLVLGVYPKPVLDVVT 498 >gi|148239022|ref|YP_001224409.1| NAD(P)H-quinone oxidoreductase chain 4 [Synechococcus sp. WH 7803] gi|147847561|emb|CAK23112.1| NAD(P)H-quinone oxidoreductase chain 4 [Synechococcus sp. WH 7803] Length = 499 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 172/484 (35%), Positives = 267/484 (55%), Gaps = 33/484 (6%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGR-RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 L+I+ +PFLG VI GR RS + L + + F+L + F + Q+ Sbjct: 2 LTILLLIPFLGALVISVLPSDESGRNRSLALLTLAVQCV-VSFALLI--PFQASETGQQL 58 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 ++ W+ + LGVDG+S+ LV++ L L+S +S++ R Y LV+ Sbjct: 59 VDSVPWLPVVGLDFSLGVDGLSLPLVLMNAVLCLVAALAS-RSVENRSRLYFSLILVISG 117 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 V GAFL+ ++LLF+IF+E LIP++++I +WGG+ R YA+ KF + T + +L A + Sbjct: 118 AVNGAFLAQNLLLFFIFYELELIPLWLLIAIWGGANRAYASTKFLIITAVSGVLILGAFL 177 Query: 184 VMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + T+ + + Q + A F IKIP+FPFHTWLP+AH +A T Sbjct: 178 GIALVTGTADFGVSPILAGQMSLVTQLVLMGALLIGFGIKIPLFPFHTWLPDAHTEASTP 237 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 SV LAG++LK+G YG +RF L LFP A Y AP + + I+++Y SL ++ QTD+K++ Sbjct: 238 VSVLLAGVLLKLGTYGLLRFCLGLFPEAWSYAAPWLAGWAAISVLYGSLAAIAQTDMKRM 297 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 +AYSS+ HMGYV + + + GA+FQM+SHGL+S+ LF VGV+Y+R TRD+ Sbjct: 298 VAYSSVGHMGYVLLAAAAATPMAIMGALFQMVSHGLISAVLFLAVGVVYERTGTRDLNVL 357 Query: 363 GGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL++ +P +M++ MA+ G+PG +GFI EFL+ F+ +L+ G L Sbjct: 358 RGLLNPQRGLPLTGTLMIIGVMASAGIPGMAGFISEFLIFKGSFEPFPLATLLSMIGSGL 417 Query: 420 SALYSLWLYRKVVFG--------------VSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 +A+Y L L + FG +SK QQ+ LS+ +VL + Sbjct: 418 TAVYFLLLVNRAFFGRLATASGGTPNPSILSKVSFGQQIPGLSM---------SVLILIL 468 Query: 466 GIYP 469 G+ P Sbjct: 469 GLAP 472 >gi|108796689|ref|YP_636507.1| NADH dehydrogenase subunit 4 [Zygnema circumcarinatum] gi|122233019|sp|Q32RL9|NU4C_ZYGCR RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|61393673|gb|AAX45815.1| subunit 4 of NADH-plastoquinone oxidoreductase [Zygnema circumcarinatum] Length = 512 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 169/495 (34%), Positives = 274/495 (55%), Gaps = 24/495 (4%) Query: 2 NLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVF-DKGR 59 N+P+L+ + P G+ + L G G ALGI ++ I +V+ + + Sbjct: 3 NVPWLTAIVLFPVSAGLLIPLLP---GRGNHIVRWYALGICLLDLILMTYVFGCYYNLSD 59 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q+ E Y WI+ + LGVDG+SI L++LT F+T L++W + N + + Sbjct: 60 LPVQLKEDYCWIEILDFHWRLGVDGLSIGLILLTGFVTTLATLAAWP-VTRNPKLFYFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S +G F S D+LLF++ +E LIP+++++ +WGG R+YAA KF LYT GSIF+ Sbjct: 119 LAMYSGQLGLFASQDILLFFVMWELELIPVYLLLSMWGGRRRLYAATKFILYTAGGSIFL 178 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L ++ + ++D +S +P ++ +++ F ++A+K+P FP HTWLP+ H Sbjct: 179 LAGLLTASLWGSNAPVLDFEILSHKSYPLGLEILIYLGFLIAYAVKLPAFPLHTWLPDTH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMGGYG IR + L P A FAP + L I+YA+LVS Q Sbjct: 239 GEAHYSTCMLLAGILLKMGGYGFIRVNMELLPHAHTVFAPWLVALGAYQIVYAALVSFAQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSS++HMG+V +G S G+ GAM QM+SHGL+ ++LFF G YDR T Sbjct: 299 RNLKRRIAYSSVSHMGFVLVGAGSLSDLGLSGAMLQMISHGLIGASLFFLAGTSYDRTRT 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NTV 409 + G MP+ + MA++ LPG SGF+ E +V + ++ + Sbjct: 359 LMLREMGAWASQMPKMFAMFTTCAMASLALPGMSGFVSELMVFFGMVTSAAYSPYFRAII 418 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGI 467 ++ + G++L+ +Y L + R++ +G S+ V D RE ++ + + + GI Sbjct: 419 TLIEAVGIILTPIYLLSMVRQMFYG-SRISSVSVFNNIDAGPREVFVLGSLLLPMIGIGI 477 Query: 468 YPVPIRDTFSVPLSS 482 YP F++PL S Sbjct: 478 YP-----NFALPLWS 487 >gi|170665190|gb|ACB29135.1| NADH dehydrogenase subunit D [Carthamus tinctorius] Length = 500 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 168/496 (33%), Positives = 277/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +ILF + G R + I + + + +V+ F Sbjct: 5 PWLTIIVVLPIFAGSLILFLPH--KGNRVIRWYTICICMLELLLTTYVFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ ++IAFF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIILYIAFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGISSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSSVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|218441557|ref|YP_002379886.1| NAD(P)H-quinone oxidoreductase subunit 4 [Cyanothece sp. PCC 7424] gi|218174285|gb|ACK73018.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7424] Length = 561 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 163/447 (36%), Positives = 261/447 (58%), Gaps = 15/447 (3%) Query: 4 PFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRSS 61 P+LS + LP + +I + G R + ALG+ ++F+ + W+ +D + Sbjct: 7 PWLSTIVLLPLVASTLIPVLPDKEGKTVRLY---ALGVGIVDFVLMCYAFWTNYDIHNPN 63 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQ+ E Y W+ ++ + VDG+S+ LV+L +T IL++W+ + R + LV Sbjct: 64 FQLAENYAWMPQIGLNWAVSVDGVSMPLVLLAGLVTTLSILAAWQ-VDLKPRLFYFLLLV 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L S IG F++ D+LL +I +E LIP+++++ +WGG +R YAA KF LYT SIF+L Sbjct: 123 LYSAQIGVFVAQDLLLLFIMWELELIPVYLLVSIWGGQKRRYAATKFLLYTAAASIFILV 182 Query: 181 AIVVMC-WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A + M + + I M +P +++ ++ +F K+ +FP HTWLP+AH +A Sbjct: 183 AALGMALYGDNMTFDIAALGMKDYPLTLELLLYAGLLVAFGTKLAVFPLHTWLPDAHGEA 242 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 S+ LAG++LKMGGYG IR L +F A YFAPV+ L ++ IIY S Q+++ Sbjct: 243 SAPVSMILAGVLLKMGGYGLIRLNLEIFSDAHVYFAPVLVILGVVNIIYGGFNSFAQSNM 302 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+ +AYSS++HMG+V +GI S G+ GA+ QM+SHGL+++ALFF GV YDR HT ++ Sbjct: 303 KRRLAYSSVSHMGFVLLGIASFTDLGISGAVLQMISHGLIAAALFFLAGVTYDRTHTLNL 362 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN---SNT----VAVL 412 G + MP+ + MA++ LPG SGF E V + + + S+T VL Sbjct: 363 DNMGDIGRLMPKVFALFTAAAMASLALPGMSGFASELSVFVGLTSSDIYSSTFRCVTLVL 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE 439 A+ G++L+ +Y L + R++ +G S + Sbjct: 423 AAVGLILTPIYLLSMLRQLFYGSSAAQ 449 >gi|269148493|gb|ACZ28632.1| proton-translocating NADH-quinone oxidoreductase chain M [uncultured organism] Length = 447 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 162/424 (38%), Positives = 253/424 (59%), Gaps = 11/424 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD ++ Q W S+ LG+DG S+ +++L T L IL+S +I E + Sbjct: 11 FDYASAALQYGLIIPWNPRLGSSFALGIDGFSLPMILLATLLCFLAILAS-TAITERIKG 69 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LVLE+ ++G F++ D LFY+F+E +LIP+F +I WGG + AA F LYT Sbjct: 70 YYALMLVLETAMLGVFMAQDWSLFYLFWEMTLIPLFFLIDRWGGKRKQQAALNFVLYTMG 129 Query: 174 GSIFMLFAIVVMCWEKKTSS--IIDLYAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 GSIFML +++V+ S I D+ + ++ P Q +++ F F +K+P+FP H Sbjct: 130 GSIFMLISLLVVFDAIPGHSFYIEDVASGARSLPVETQVLIFLGFLIGFGVKMPIFPLHG 189 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP+ S+ L+GI+LKMG YG IR + + P A+ V+ L L ++IY Sbjct: 190 WLPLAHVEAPSPVSILLSGILLKMGSYGLIR-AVTMLPEAALALQNVMAGLGLFSLIYGG 248 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 L++ QTD++ +IAYSS++HMG V +GI S K+G+ GA+ QM++HGLV+ ALF +G++ Sbjct: 249 LLAWRQTDLRAMIAYSSVSHMGIVLLGIASLNKAGLTGAVMQMVAHGLVAGALFLLIGLL 308 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R TRDI Y L+ PR+A + +A MG+PGT+GFI E I+ F+ V Sbjct: 309 YERTRTRDINHYSSLIQVTPRFAFFTSLALLAGMGIPGTAGFIAELHAIIGGFERWGWVI 368 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCE--KVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 +L S GV+++A YSL ++ G + + KVQ ++ + L ++ +++V G+ Sbjct: 369 LLVSIGVMITATYSLRTIGRLFTGPVRPDMRKVQDMRPVELAAAGLLSA-GIISV--GVA 425 Query: 469 PVPI 472 P P+ Sbjct: 426 PGPV 429 >gi|299138530|ref|ZP_07031709.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidobacterium sp. MP5ACTX8] gi|298599776|gb|EFI55935.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidobacterium sp. MP5ACTX8] Length = 534 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 171/486 (35%), Positives = 278/486 (57%), Gaps = 26/486 (5%) Query: 1 MNLP--FLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 MNL L+++ P +G V+ L G + + + + T+ L + Sbjct: 1 MNLDHSILTLILLAPLVGAGVLALIPERAGTKIHAIGALIVTLVTLGLTLHLPWHFDYAA 60 Query: 58 GRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 R SFQ + WI YHLGVDG+S+ L+VL FL P +L+SW +++E + + Sbjct: 61 ARGSFQFEQNCPWIASPAIRYHLGVDGLSMWLIVLAGFLAPIGVLASWNAVKERTKLFYT 120 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGS 175 FL+ + ++G FL+LD+ L+Y F+E SLIPM ++I +G +E R AA KFFLY F S Sbjct: 121 LFLLQQVAMLGIFLALDLFLYYGFWELSLIPMTLLIATFGRTENRRKAAIKFFLYAFIPS 180 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAM----SKFPFSIQYW-MWI---AFFCSFAIKIPMFP 227 +L V M W + DL + ++ S + +W+ AF +FA+K+P+FP Sbjct: 181 AILL---VAMLWLYARTGTFDLPTLQALAAQHAISTNHTALWLCSLAFLAAFAVKVPIFP 237 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 H WL +A +APTA + LAG K+G Y +RF +FP S++ AP + L I I Sbjct: 238 LHGWLSDAVQEAPTAAVMVLAG---KLGLYSILRFSFGIFPEQSRHIAPWLIALGAIGIA 294 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 Y +L++++QTD+KKL A+S+++H+ ++ +GIF+ G++G ++Q+L+ LV +ALF + Sbjct: 295 YGALLALIQTDLKKLAAFSTLSHVSFIVLGIFTFTTMGIDGGVYQILNESLVGAALFVLL 354 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI----MSVF 403 G++Y+R T DI YGGL P + ++ T+A +GLP +GF+GEFL++ SVF Sbjct: 355 GLLYERYGTYDIRDYGGLATKHPWMVTMFVITTLAAVGLPMLNGFVGEFLILSGAMQSVF 414 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGV--SKCEKVQQLKDLSLRERCMVYPIAVL 461 N V+ + GV+ A Y LW+ +++ +G + E+V+ DL RE ++P+A+L Sbjct: 415 SNHILWTVVGTTGVIFGAAYMLWMIQRIFYGKLGLRSEEVKGW-DLCAREHLELWPLAIL 473 Query: 462 TVFFGI 467 + G+ Sbjct: 474 FLVMGL 479 >gi|222479148|ref|YP_002565385.1| proton-translocating NADH-quinone oxidoreductase, chain M [Halorubrum lacusprofundi ATCC 49239] gi|222452050|gb|ACM56315.1| proton-translocating NADH-quinone oxidoreductase, chain M [Halorubrum lacusprofundi ATCC 49239] Length = 509 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 177/511 (34%), Positives = 275/511 (53%), Gaps = 46/511 (9%) Query: 14 FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ--------MI 65 F+ ++L + GR +F S + F SL++WS F+ ++ I Sbjct: 10 FVAALLVLLAPNEWAGRLAF-----AFSLLPFAGSLYLWSGFESAGNALTGGDIAYATQI 64 Query: 66 EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 E+ S+ +GVDGIS+ LVVLTTFL P I+S+W I ++ L +E+ + Sbjct: 65 EWLEVGGRTVSWFVGVDGISLPLVVLTTFLVPLAIVSAWTPIDARQSQFYGLMLFMEANL 124 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM 185 +G F +LD L+++F+EA L+PM+ +IG+WGG R YAA KFF+YT S+ M + + Sbjct: 125 LGVFTALDFFLWFVFWEAVLVPMYFLIGIWGGPRRKYAAIKFFVYTNAASLLMFIGFMSL 184 Query: 186 CW-----------EKKTSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 + + T +I D + F P I ++A F FA+K+P+ PFHTW Sbjct: 185 TFALGDSVSSFALPEITQAIADGGLGTWFGISPDRIAMIAFLAMFLGFAVKVPIVPFHTW 244 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHV+APT SV LAG++LKMG Y +RF + P + A I +++I++IY ++ Sbjct: 245 LPDAHVEAPTPVSVLLAGVLLKMGTYALLRFNFTMLPEQASALAVPIAAIAVISVIYGAM 304 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 +++ Q D+K+++AYSS++ MGYV +G+ + GV GA FQM++HGL+S +F VGVIY Sbjct: 305 LALGQKDLKRIVAYSSVSSMGYVILGLIVFTEYGVGGATFQMVAHGLISGLMFMAVGVIY 364 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN-----S 406 + HTR + G+ MP +++ MGLP +GF GEF + + F + Sbjct: 365 NATHTRMVGDMSGMADRMPVAVGILVAGAFGYMGLPLMAGFAGEFFIFVGSFAAPALPYA 424 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV--- 463 LA FG+V+ A Y L + +FG + E + + V P+AVL V Sbjct: 425 PIFTALAMFGIVIVAGYLLSAMQSTLFGPFELETDYDVGPAPFHD---VAPLAVLLVAII 481 Query: 464 FFGIYP----VPIRDTFSVPLSSIIENYTLK 490 G+ P IRD +VP ++E T+ Sbjct: 482 VLGVAPDIFFEMIRDA-AVP---VVEGVTVD 508 >gi|289679213|ref|ZP_06500103.1| NADH dehydrogenase subunit M [Pseudomonas syringae pv. syringae FF5] Length = 375 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 151/352 (42%), Positives = 223/352 (63%), Gaps = 13/352 (3%) Query: 145 LIPMFVIIGVWGGSE------RIYAAYKFFLYTFFGSIFMLFAIV--VMCWEKKTSSIID 196 L+PM+ +I +WG S RIYAA KFF++T + ML AI+ V+ +T I Sbjct: 13 LVPMYFLIALWGHSSSDGKKTRIYAATKFFIFTQASGLIMLVAILGLVLVHFNQTGVITF 72 Query: 197 LYA---MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 YA +K +Y + + FF +FA+K+P+ P H+WLP+AH QAPTAGSV LAGI+LK Sbjct: 73 AYADLLKTKLAPGTEYILMLGFFIAFAVKLPVVPLHSWLPDAHAQAPTAGSVDLAGILLK 132 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 YG +RF LPLFP AS FAP+ L L+ I Y + ++ QTDIK+LIA+SS++HMG+ Sbjct: 133 TAAYGLLRFALPLFPNASAEFAPIAMTLGLVGIFYGAFLAFAQTDIKRLIAFSSVSHMGF 192 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V IGI+SG + ++G + QM++HGL ++ALF G +Y+RLHTRD+ GGL + Sbjct: 193 VLIGIYSGSQQALQGVLIQMIAHGLSAAALFILSGQLYERLHTRDMREMGGLWSRIAYIP 252 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 + + F A++GLPGT F+GEFL+++ F +S + +A+ G+V ++YSL + + F Sbjct: 253 AISLFFAAASLGLPGTGNFVGEFLILLGSFASSPWITAIATSGLVFGSVYSLIMIHRAYF 312 Query: 434 GVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 G SK ++V LK + RE MV +AVL V G++P P DT + + + + Sbjct: 313 GPSKSDEV--LKGMDGREMIMVLGLAVLLVVLGVFPQPFLDTSAATMHGVQQ 362 >gi|254382430|ref|ZP_04997789.1| NADH dehydrogenase subunit M [Streptomyces sp. Mg1] gi|194341334|gb|EDX22300.1| NADH dehydrogenase subunit M [Streptomyces sp. Mg1] Length = 532 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 168/493 (34%), Positives = 274/493 (55%), Gaps = 36/493 (7%) Query: 17 VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFC 75 V +L ++ R + +AL S ++ V F+ G + +Q+ E + WI D+ Sbjct: 5 VGAVLTAAVPAARRTAAKWLALLFSLATLALAVLVAVRFEPGGARYQLTESHAWIPDFGV 64 Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKS---IQENFREYMIA------FLVLESMVI 126 Y LGVDGI + L+ LT L PF IL+ W ++ R + L++E+MVI Sbjct: 65 RYELGVDGIGVALIALTAVLMPFIILAGWHDADPLENKSRRWRPTQGFFALILLVEAMVI 124 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWG--------------------GSERIYAAYK 166 +F + D+ LFY+FFEA LIPM+ +IG +G ++R YAA K Sbjct: 125 ISFEATDVFLFYVFFEAMLIPMYFLIGGFGDRATSSRSAAAAAGGSDENAAAQRSYAAVK 184 Query: 167 FFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS-----KFPFSIQYWMWIAFFCSFAI 221 F LY G + ML A++ + S+ ++ A + + +++ FF +FA+ Sbjct: 185 FLLYNLAGGLIMLAAVIGLYVVAGNFSLQEITAARAAGTLDMAANTERLLFLGFFFAFAV 244 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K P++P HTWLPNA ++ +V + ++ K+G + +RF L LFP AS++ PVI L Sbjct: 245 KAPLWPLHTWLPNAMGESTAPVAVLITAVVDKVGTFAMLRFCLGLFPDASKWATPVILVL 304 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +LI+I+Y +L+++ Q DIK+L+AY+SI+H G++ +GIF+ G GA M++HGL ++ Sbjct: 305 ALISIVYGALLAVGQRDIKRLVAYASISHFGFIILGIFAMTSQGQSGATLYMVNHGLSTA 364 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 AL G + R +R I YGG+ P A ++ +A + LPG + F+ EFLV++ Sbjct: 365 ALMLVAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFVSEFLVLVG 424 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 + V ++A+ G+VL+ALY+L LY++ + G K E+V+ + DL LRE +V P+ L Sbjct: 425 TYARYPVVGIIATVGIVLAALYTLVLYQRTMTGPVK-EEVRAMPDLHLREMLVVAPLIAL 483 Query: 462 TVFFGIYPVPIRD 474 + G+YP + D Sbjct: 484 LIGLGVYPKVLTD 496 >gi|75910671|ref|YP_324967.1| NAD(P)H-quinone oxidoreductase subunit D4 [Anabaena variabilis ATCC 29413] gi|75704396|gb|ABA24072.1| NADH dehydrogenase subunit M [Anabaena variabilis ATCC 29413] Length = 500 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 186/471 (39%), Positives = 274/471 (58%), Gaps = 12/471 (2%) Query: 6 LSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS++ F P LG +I +F S G R VAL +++ F++S+ + S F G + Q Sbjct: 2 LSVLIFAPLLGALLIGIFPS--GINGRISRNVALISASVTFLWSVILASQFQTGEVNQQF 59 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 E+ WID SY+LGVDG+S+ L+VL LT I SS +S+Q + Y LVL + Sbjct: 60 SEFLPWIDSLGLSYNLGVDGLSLPLLVLNGLLTAIAIYSSDESLQRP-KFYYSLILVLST 118 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 V GAFL+ D+LLF++F+E LIP++++I +WGG+ R YAA KF +YT F I +L + + Sbjct: 119 GVAGAFLAQDLLLFFLFYELELIPLYLLIAIWGGARRGYAATKFLIYTAFSGILILASFL 178 Query: 184 VMCWEKKTSS--IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + W + S + L A S + + F IK+P+ PFHTWLP+AHV+A T Sbjct: 179 GLVWLSGSGSFALSTLNAQSLPLATQLLLL-AGILVGFGIKMPLVPFHTWLPDAHVEAST 237 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 SV LAG++LK+G YG +RF + L P A Y AP + ++++++Y S ++ QTD+KK Sbjct: 238 PISVLLAGVLLKLGTYGLLRFGMNLLPTAWNYLAPWLAVWAVVSVLYGSSCAIAQTDMKK 297 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 ++AYSSI HMGYV + + GA+ QM+SHGL+S+ LF VGV+Y + +RD+ Sbjct: 298 MVAYSSIGHMGYVLLAAAAATPLSTLGAVMQMISHGLISALLFLLVGVVYKKAGSRDLDV 357 Query: 362 YGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 GL++ MP +M+V MA+ G PG GFI EF++ F +L+ G Sbjct: 358 LRGLLNPERGMPVIGTLMIVGVMASAGTPGMVGFISEFIIFRGSFAVFPVQTLLSMIGTG 417 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+A+Y L L K FG +V L + +R + +AVL V FGI P Sbjct: 418 LTAVYFLILVNKAFFG-RLSAQVMNLPRIYWSDRAPAFILAVLIVIFGIQP 467 >gi|289548980|ref|YP_003473968.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermocrinis albus DSM 14484] gi|289182597|gb|ADC89841.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermocrinis albus DSM 14484] Length = 501 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 146/374 (39%), Positives = 235/374 (62%), Gaps = 9/374 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 DG+S L+ +LTT ++ IL S + Q +EY + FL+ ES+++G F SLD+++FY+ Sbjct: 81 DGLSYLMYLLTTLVSLAAILWSLRDHQITHRLKEYYLFFLLTESLLVGVFGSLDLIVFYV 140 Query: 140 FFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE------KKTSS 193 F+E +L+PMF +IGVWG R+Y+AYKFF+Y F S+F+L IV + E K + Sbjct: 141 FYELTLVPMFFVIGVWGYKLRLYSAYKFFIYIFVSSLFLLLGIVTVAVEHYRQFGKFSFF 200 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 DL + +P ++ ++++ F +FA+K P+ PFHTWLP+AH +APTAGSV LA ++LK Sbjct: 201 YFDLIN-NHYPLGLEIFLFVLFLIAFAVKTPVVPFHTWLPDAHGEAPTAGSVVLAALLLK 259 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 MG Y +RF + LFP A+++ P + + +I++AS ++ Q ++K+ +AYSSI+HMG+ Sbjct: 260 MGTYALLRFNIGLFPEATKFLMPFMVLWGIASIVFASWFTISQNNVKRFVAYSSISHMGF 319 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V G+F + G+ ++ +M +HGL SSALF G IY+RLH+ ++ A G + MP +A Sbjct: 320 VVAGMFLLNQQGLRASIMEMFAHGLTSSALFMMAGFIYNRLHSFNMDALKGSIKFMPVFA 379 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ + ++MGLPG S F G+FL I + S +A+ G S LY L+L + + Sbjct: 380 FLVAITAYSSMGLPGGSSFWGKFLTIAGAREYSLWLALFVLGGAFFSVLYMLYLLKTLYL 439 Query: 434 GVSKCEKVQQLKDL 447 + ++ D+ Sbjct: 440 DTKEESRLVHFSDM 453 >gi|124023557|ref|YP_001017864.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9303] gi|123963843|gb|ABM78599.1| putative NADH Dehydrogenase (complex I) subunit (chain 4) [Prochlorococcus marinus str. MIT 9303] Length = 523 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 166/495 (33%), Positives = 272/495 (54%), Gaps = 15/495 (3%) Query: 4 PFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWS-VFDKGRSS 61 P+LS++ LP +G ++ L ++ AL ++F+ L V+S +FD Sbjct: 16 PWLSLIVLLPAMGALLMPLLPGNETSNSQAPRNFALAFLLVDFVLMLVVFSRMFDGQDGG 75 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E WI + + LG DG+S LVVL+ +T + +SWK +Q R Y LV Sbjct: 76 LQLVERVSWIPFIGLEWSLGADGLSAPLVVLSGLITLLAVAASWK-VQSKTRLYFALLLV 134 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 S FLS D LLF++ +E L+P++++I +WGGS R+YAA KF LYT S+ +L Sbjct: 135 QASAQGLVFLSQDFLLFFLAWELELVPVYLLIAIWGGSRRLYAATKFILYTALASLLILI 194 Query: 181 AIVVMCWEKK--TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + T ++ +L S S+ ++ F F +K+PMFP HTWLP+AH + Sbjct: 195 SGLALALSGGEFTLNLTELANRSP-EGSLGLLCYLGFLVGFGVKLPMFPLHTWLPDAHGE 253 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A S+ LAG++LKMGGY +RF + + P A AP + + ++ IIY +L + Q + Sbjct: 254 ANAPVSMLLAGVLLKMGGYALLRFNVQMLPDAHLQLAPALIVIGIVNIIYGALNAFAQDN 313 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+R T Sbjct: 314 VKRRIACSSVSHMGFVLLGIGAIDALGISGAMLQMISHGLIAAAMFFVTGTFYERTQTLS 373 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA-------V 411 I GGL +P + ++A++ LPG SGF+ E V + + + V Sbjct: 374 IPNMGGLAKVLPITFAFFLASSLASLALPGMSGFVSEITVFLGIISQEGFTSIFRVITIV 433 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 LA+ G+VL+ +Y L + R+V FG + + ++D++ RE + + V T+ G +P Sbjct: 434 LAAIGLVLTPVYLLSMCRRVFFG-PRIPALAMIEDINPRELTIGLSLIVPTLVIGFWPRV 492 Query: 472 IRDTFSVPLSSIIEN 486 D + +++ + Sbjct: 493 AIDLYEASTNALADR 507 >gi|325105655|ref|YP_004275309.1| NADH dehydrogenase subunit M [Pedobacter saltans DSM 12145] gi|324974503|gb|ADY53487.1| NADH dehydrogenase subunit M [Pedobacter saltans DSM 12145] Length = 483 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 174/462 (37%), Positives = 267/462 (57%), Gaps = 13/462 (2%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 F P +G LFS + +AL S I +L + F+ + Q Y W Sbjct: 8 FFPIIGAIATLFSG------KYAKQIALVSSLITLATTLGLLCSFNP-EAGRQFTVNYPW 60 Query: 71 IDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAF 129 + F Y GVDGIS+ +++LT L P ILS++K E Y + + ++I F Sbjct: 61 MTKFGIYFTAGVDGISMSMLLLTAGLLPLIILSTFKRNIEKPVFYALMLFMQFGLLI-VF 119 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE- 188 ++D LFY +E +LIP++ I +WGG +RI KFF+YT GS+FML I+ + + Sbjct: 120 TAMDAFLFYAGWELALIPIYFICALWGGEDRIKVNMKFFIYTVAGSLFMLLGIIYLYLQT 179 Query: 189 -KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 +T SI YA++ P Q W++ FF +FAIK+P+FPFHTW P+ +V APTAG++ L Sbjct: 180 PSRTFSIDAFYALN-LPKETQSWLFWCFFLAFAIKMPVFPFHTWQPDTYVSAPTAGTMLL 238 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AGIMLKMG YG I +L+P+ + + LS+I IIY S+++ Q DIK+LIAYSS Sbjct: 239 AGIMLKMGVYGVIVWLVPVLTHGFLLWGKIALTLSVIGIIYGSIIAFTQKDIKRLIAYSS 298 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 IAH+G ++ G+F+ G++GA+ QML+HG+ LFF V ++ DRL TR++ GG+ Sbjct: 299 IAHVGLISAGVFTWNVQGLQGAIIQMLNHGISVIGLFFVVDILIDRLKTRELSEMGGIAK 358 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P++A+ ++ + +GLP T+GFIGEFL++ +F+ + AV ++ A+Y L Sbjct: 359 IAPKFAIAFLIIVLGAIGLPITNGFIGEFLLLNGLFKFNLWYAVFGGLTIIFGAVYMLRT 418 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Y+ V+ G KD+S E ++ + +L + G+YP Sbjct: 419 YKAVMQG-ELNSLTSSFKDISGSEVLVLAIVCLLIIAIGVYP 459 >gi|172036608|ref|YP_001803109.1| NAD(P)H-quinone oxidoreductase subunit D4 [Cyanothece sp. ATCC 51142] gi|171698062|gb|ACB51043.1| NADH dehydrogenase subunit 4 [Cyanothece sp. ATCC 51142] Length = 507 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 170/440 (38%), Positives = 258/440 (58%), Gaps = 9/440 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTF 94 +AL I+++ + ++ + FD + Q E+ WI D +YHLGVDG+S+ LVVL + Sbjct: 31 LALVITSLLLVLTIVIGFQFDLKNPNIQFTEFIPWITDIGLNYHLGVDGLSLPLVVLNSL 90 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 LT I +S K+I+ + R Y L+L S V GAFL+ D+LLF++F+E +IP++ +I + Sbjct: 91 LTLIAIYASEKTIERS-RFYYPLILILNSGVSGAFLAQDILLFFLFYELEIIPLYFLIAI 149 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 WGGS+R YAA KF LYT +L + + + W S+ D + + + + Sbjct: 150 WGGSKRGYAAMKFLLYTAISGFLVLASFLGLVWLSGASTF-DYEPLRSHTLPLSTQLLLL 208 Query: 215 FFCSF--AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 AIKIP+FPFHTWLP+AHV+A T SV LAG++LK+G YG +RF + LF A Sbjct: 209 APLLIGLAIKIPIFPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFLDAWV 268 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 Y AP + L+ I+ +Y + ++VQ D+KK++AYSSIAHM Y+ + + + V A FQ Sbjct: 269 YIAPWLATLAAISALYGASCAIVQKDMKKVVAYSSIAHMAYILLAAAASTRLSVTAATFQ 328 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGT 389 M+SHGL+S+ LF VGV+Y + +RD+ GL++ +P ++++ MA+ G+PG Sbjct: 329 MVSHGLISAMLFLLVGVVYKKTGSRDVDFLRGLLNPQRGLPITGSLIILGVMASAGIPGM 388 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 GFI EFLV F +L G L+A+Y L + +V FG E + Q+ + Sbjct: 389 VGFIAEFLVFRGSFPIFPVQTLLCLVGSGLTAVYFLLMVNRVFFGRLTPE-LSQIPRVLW 447 Query: 450 RERCMVYPIAVLTVFFGIYP 469 ER + +A+L V GI P Sbjct: 448 SERLPAFVLALLIVILGIQP 467 >gi|148260113|ref|YP_001234240.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidiphilium cryptum JF-5] gi|146401794|gb|ABQ30321.1| NADH dehydrogenase subunit M [Acidiphilium cryptum JF-5] Length = 505 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 171/435 (39%), Positives = 272/435 (62%), Gaps = 7/435 (1%) Query: 68 YHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI 126 + WI S+ L +DG+S++L++LT L+ C++ SW I + + L + VI Sbjct: 64 HSWIPQLGISFELDLDGLSLVLILLTIVLSLICVVISWTEITDRSGLFHANLLWTTTGVI 123 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 G FL+LD+ LF+ F+E L+PM+ +I +WG R YAA KFFL+T + ML +I+V+ Sbjct: 124 GVFLALDLFLFFFFWELMLVPMYFMIALWGHENRSYAAIKFFLFTQGSGLLMLVSILVLV 183 Query: 187 W--EKKTSSII-DLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + ++ T + D +A+ +K + + + + FF +FA+K+P PFHTWLP+AH +APT Sbjct: 184 FIHQRATGDLTFDYFALLGTKMSPTTGFLLMLGFFIAFAVKLPAVPFHTWLPDAHTEAPT 243 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LAGI+LK G YG IRF++PLFP A+ FAPV L++ I+Y +L++ Q D+K+ Sbjct: 244 AGSVLLAGILLKTGAYGLIRFVVPLFPAAAHAFAPVAMALAVAGILYGALLAFGQNDLKR 303 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSI+HMG+V +G+F+ ++G + QM++HG+ + ALF VG + +R+HTRD+ Sbjct: 304 LVAYSSISHMGFVLLGVFAWSTLALQGVVAQMVAHGISTGALFVLVGALQERIHTRDMRR 363 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GGL +PR + M F +A++GLPG FIGEFL+++ FQ S V+A+FG+V +A Sbjct: 364 MGGLWGQVPRLSACGMFFAIASLGLPGLGNFIGEFLILLGSFQASVVFTVIATFGLVAAA 423 Query: 422 LYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 YSL L ++ G ++ + + DLS ++ + V V G+YP P+ D + L Sbjct: 424 AYSLLLVQRAFHGAAQEPAPHRAIADLSAPHLAVMAVLVVAIVGLGLYPQPVFDEVAPGL 483 Query: 481 SSIIENYTLKTGYSD 495 S++ + + + Sbjct: 484 SAVQHSAAVSAALPE 498 >gi|329935985|ref|ZP_08285785.1| NADH dehydrogenase subunit M [Streptomyces griseoaurantiacus M045] gi|329304463|gb|EGG48341.1| NADH dehydrogenase subunit M [Streptomyces griseoaurantiacus M045] Length = 509 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 165/465 (35%), Positives = 263/465 (56%), Gaps = 27/465 (5%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTF 94 +AL +S ++ V FD +Q+ E + WI D+ Y LGVDGI + L+ LT Sbjct: 20 LALAVSLATLGLAVAVLVRFDPDGDRYQLTESHSWISDFGVRYELGVDGIGVALLALTAL 79 Query: 95 LTPFCILSSWKSIQ---------ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASL 145 L PF +L+ W + + L +E+MVI +F + D+ LFYIFFEA L Sbjct: 80 LIPFIVLAGWHDADPLETGSSRWRPTQGFFALILAVEAMVILSFEATDVFLFYIFFEAML 139 Query: 146 IPMFVIIGVWGG-----------SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 IP++ +IG +G ++R YAA KF LY G + ML A++ + S+ Sbjct: 140 IPLYFLIGGFGDRAHQGGEETASTQRSYAAVKFLLYNLAGGLIMLAAVIGLYTVAGNFSL 199 Query: 195 IDLYAMS-----KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 ++ S + W+++ FF +FA+K P++P HTWLPNA ++ +V + Sbjct: 200 QEIAQARADGSLHMATSTERWLFLGFFFAFAVKAPLWPLHTWLPNAMGESTAPVAVLITA 259 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++ K+G + +RF L LFP AS++ PVI L++I+I+Y +L+++ Q DIK+LIAY+SI+ Sbjct: 260 VVDKVGTFAMLRFCLQLFPEASKWATPVILVLAVISILYGALLAVGQRDIKRLIAYASIS 319 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 H G++ +GIF+ G GA M++HG+ ++AL G + R +R I YGG+ Sbjct: 320 HFGFIIMGIFAMTSQGQSGATLYMVNHGISTAALLLVAGFLISRRGSRLIADYGGVQKVA 379 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A +V +A + LPG + F+ EFLV++ F + ++A+ G+VL+ALY+L LY+ Sbjct: 380 PVLAGTFLVGGLATLSLPGLAPFVSEFLVLVGTFTRHPVIGIVATVGIVLAALYTLVLYQ 439 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + + G K E V + DL +RE +V P+ L +F G+YP P+ D Sbjct: 440 RTMTGPVKAE-VATMPDLRVRELVVVAPLIALLLFLGVYPKPVAD 483 >gi|86607797|ref|YP_476559.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. JA-2-3B'a(2-13)] gi|123503936|sp|Q2JPJ1|NU4C1_SYNJB RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 1; AltName: Full=NAD(P)H dehydrogenase I, chain 4 1; AltName: Full=NDH-1, chain 4 1 gi|86556339|gb|ABD01296.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 528 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 161/440 (36%), Positives = 258/440 (58%), Gaps = 22/440 (5%) Query: 55 FDKGRSSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 +D S Q+ E Y W+ + L VDG+S+ LV+L+ +T I+++W ++ R Sbjct: 56 YDLQDFSLQLAERYAWVPQIGFHWSLAVDGLSLPLVLLSGLITTLSIVAAW-NLSHKPRL 114 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 + L++ +G FL+ DMLLF++ +E L+P++++I +WGG +R YAA KF LYT Sbjct: 115 FFFLLLLMYGAQVGVFLAQDMLLFFLMWEIELVPVYLLISIWGGPKRQYAATKFILYTAA 174 Query: 174 GSIFMLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 SIF+L + M + E + + +L A S +P +++ + A +F +K+P+FP HTW Sbjct: 175 ASIFILVGSLAMAFYGEGFSLEMAELSAKS-YPLALELLAYAALLIAFGVKLPIFPLHTW 233 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A S+ LAG++LKMGGYG IR + + A YFAPV+ L ++ IIY +L Sbjct: 234 LPDAHSEASAPISMILAGVLLKMGGYGLIRMNVGMLSEAHVYFAPVLAVLGVVNIIYGAL 293 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 + Q +K+ +AYSSIAHMG+V IGI + + G+ GA+ QM+SHGL+++ LFF G+ Y Sbjct: 294 AAFGQNHLKRRLAYSSIAHMGFVLIGISAFTELGINGAVLQMISHGLIAAVLFFLTGITY 353 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS----- 406 +R HT + GGL MP+ + ++A++ LPG SGF+GE V + + + Sbjct: 354 ERTHTLALDKLGGLAKQMPKAFALFTAGSLASLALPGMSGFVGELTVFLGLTTSDAYAPT 413 Query: 407 --NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRER----CMVYPI 458 +A+LA+ G++L+ +Y L + R+V +G V + L D+ RE C++ PI Sbjct: 414 FKAGIALLAAVGIILTPIYLLSMLRQVFYGAQDPGLVLEDYLGDVRPREMAVALCLLLPI 473 Query: 459 AVLTVFFGIYPVPIRDTFSV 478 + G YP T+ V Sbjct: 474 ----LGIGFYPRLATQTYDV 489 >gi|183981486|ref|YP_001849777.1| NADH dehydrogenase I (chain M) NuoM (NADH- ubiquinone oxidoreductase chain M) [Mycobacterium marinum M] gi|183174812|gb|ACC39922.1| NADH dehydrogenase I (chain M) NuoM (NADH- ubiquinone oxidoreductase chain M) [Mycobacterium marinum M] Length = 528 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 171/457 (37%), Positives = 260/457 (56%), Gaps = 22/457 (4%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR- 112 F +Q +E WI F SY LGVDGI+++LV+LTT L P ++ W E R Sbjct: 55 FKPSGEHYQFVENRSWIPAFGASYTLGVDGIAVVLVLLTTVLIPLLQIAGWNDGGERTRG 114 Query: 113 --EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFL 169 Y+ L +ESMV+ + ++LD+LLFY+FFEA LIPM+ +IG +G G R AA KF L Sbjct: 115 VHAYVALTLAIESMVLISVVALDVLLFYVFFEAMLIPMYFLIGGFGQGRARSGAAVKFLL 174 Query: 170 YTFFGSIFMLFAIVVM--CWEKKTSSIIDLYAM---------SKFPFSIQYWMWIAFFCS 218 Y FG + ML A++ + + S D + + P ++ +++ F + Sbjct: 175 YNLFGGLIMLAAVIGLYVVTAQNGSGTFDFRDIVAGVQGGHYGEHP-AVFKALFLGFMFA 233 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 FAIK P++PFH WLP+A V++ A +V + +M K+G +G +R+ L LFP AS YF P+I Sbjct: 234 FAIKAPLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPDASTYFRPLI 293 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 L++I +IY ++V++ QTDI +LIAY+SI+H G++ GIF G G+ ML+HGL Sbjct: 294 VTLAIIGVIYGAVVAIGQTDIMRLIAYTSISHFGFIIAGIFVMTTQGQSGSTLYMLNHGL 353 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 ++A+F G + R +R I YGG+ P A +V MA + LPG + FI EFLV Sbjct: 354 STAAVFLIAGFLISRHGSRAIADYGGVQKVAPVLAGTFLVSAMATLSLPGLAPFISEFLV 413 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 ++ F A +VLSA+Y LWLY++V+ G + +++ DL RE +V P+ Sbjct: 414 LLGTFNRYWLAAAFGVTALVLSAIYMLWLYQRVMTG-PLAKGNERIGDLVPREMIVVAPL 472 Query: 459 AVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 + + G+YP P+ D ++ +E+ G D Sbjct: 473 IAMLLILGVYPKPVLDV----INPAVEHTMSTIGQHD 505 >gi|326561578|gb|EGE11919.1| NADH dehydrogenase subunit M [Moraxella catarrhalis 46P47B1] Length = 575 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 168/434 (38%), Positives = 256/434 (58%), Gaps = 15/434 (3%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI F +HL +DG+S+L++ LT FL + SW IQ + + L VIG Sbjct: 83 WIPSFGIKFHLAMDGLSLLMIALTAFLGIMAVGCSWGEIQRRVGFFHLNLLWSLGGVIGV 142 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLYT-FFGSIFMLFAI 182 FL++D+ LF+ F+E L+P++ +I +WG G + YAA KFF+YT G I ++ + Sbjct: 143 FLAIDLFLFFFFWELMLLPIYFLIALWGHNATGGKSKEYAATKFFIYTQASGLIMLIGIL 202 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMW---IAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +++ + + ++ ++ W + + FF FA+K+P+FP H WLP+AH QA Sbjct: 203 LLVIIQFSQTGVLSFDYHDLLGVNLGDWEYAIMLCFFIGFAVKLPIFPLHGWLPDAHAQA 262 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTAGSV LAGI++K +G +RF++PLFP AS FAPV L +I + Y + ++ QTDI Sbjct: 263 PTAGSVDLAGILIKTAAFGLLRFVIPLFPNASAQFAPVAITLGMIGVFYGAFLAFAQTDI 322 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+L+AY+S++HMG+V + I++G ++G M QML+HGL S+ALF G IY+RLHTRD+ Sbjct: 323 KRLLAYTSVSHMGFVVLAIYAGTLVSLQGLMVQMLAHGLSSAALFIMAGQIYERLHTRDM 382 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GG+ R A +M F A +G+PGT FIGE L+++ F LA+ +V+ Sbjct: 383 TVMGGMWGQFRRLAPFVMFFCAALLGIPGTGNFIGEILILIGAFAIHPIFVTLATVSLVM 442 Query: 420 SALYSLWLYRKVVFGVSKC-EKVQQ----LKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + LYSL + +FG + E V+Q LKDL RE ++ +A+ V+ G+YP P+ D Sbjct: 443 AGLYSLMIIYHALFGQNTTLELVKQNHGTLKDLGKRELVLLLSLAIGLVWLGLYPQPVMD 502 Query: 475 TFSVPLSSIIENYT 488 + I Y Sbjct: 503 KSEGSMQWIASAYA 516 >gi|326402934|ref|YP_004283015.1| NADH-quinone oxidoreductase subunit M [Acidiphilium multivorum AIU301] gi|325049795|dbj|BAJ80133.1| NADH-quinone oxidoreductase subunit M [Acidiphilium multivorum AIU301] Length = 505 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 171/435 (39%), Positives = 272/435 (62%), Gaps = 7/435 (1%) Query: 68 YHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI 126 + WI S+ L +DG+S++L++LT L+ C++ SW I + + L + VI Sbjct: 64 HSWIPQLGISFELDLDGLSLVLILLTIVLSLICVVISWTEITDRSGLFHANLLWTTTGVI 123 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 G FL+LD+ LF+ F+E L+PM+ +I +WG R YAA KFFL+T + ML +I+V+ Sbjct: 124 GVFLALDLFLFFFFWELMLVPMYFMIALWGHENRSYAAIKFFLFTQGSGLLMLVSILVLV 183 Query: 187 W--EKKTSSII-DLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + ++ T + D +A+ +K + + + + FF +FA+K+P PFHTWLP+AH +APT Sbjct: 184 FIHQRATGDLTFDYFALLGTKMSPTTGFLLMLGFFIAFAVKLPAVPFHTWLPDAHTEAPT 243 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGSV LAGI+LK G YG IRF++PLFP A+ FAPV L++ I+Y +L++ Q D+K+ Sbjct: 244 AGSVLLAGILLKTGAYGLIRFVVPLFPAAAHAFAPVAMALAVAGILYGALLAFGQNDLKR 303 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSI+HMG+V +G+F+ ++G + QM++HG+ + ALF VG + +R+HTRD+ Sbjct: 304 LVAYSSISHMGFVLLGVFAWSTLALQGVVAQMVAHGISTGALFVLVGALQERIHTRDMRR 363 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GGL +PR + M F +A++GLPG FIGEFL+++ FQ S V+A+FG+V +A Sbjct: 364 MGGLWGQVPRLSACGMFFAIASLGLPGLGNFIGEFLILLGSFQASVVFTVIATFGLVAAA 423 Query: 422 LYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 YSL L ++ G ++ + + DLS ++ + V V G+YP P+ D + L Sbjct: 424 AYSLLLVQRAFHGAAREPAPHRAIADLSAPHLAVMAVLVVAIVGLGLYPQPVFDEVAPGL 483 Query: 481 SSIIENYTLKTGYSD 495 S++ + + + Sbjct: 484 SAVQHSAAVSASMPE 498 >gi|28261769|ref|NP_783282.1| NADH dehydrogenase subunit 4 [Atropa belladonna] gi|75160522|sp|Q8S8U7|NU4C_ATRBE RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|20068383|emb|CAC88096.1| NADH dehydrogenase ND4 subunit [Atropa belladonna] Length = 500 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 265/477 (55%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYH-FQLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WID+F + LG+DG+SI ++LT F+T L++W I + R + L + Sbjct: 64 LVEDYKWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-ITRDSRLFHFIMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ + +P ++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 183 LGVALYGSNEPTLNFETLVNQSYPVVLEIIFYIGFFIAFAVKLPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV-------LA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + V + + Sbjct: 363 EMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYVLIPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 423 AIGMILTPIYSLSMSRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYP 479 >gi|313679556|ref|YP_004057295.1| proton-translocating NADH-quinone oxidoreductase, chain m [Oceanithermus profundus DSM 14977] gi|313152271|gb|ADR36122.1| proton-translocating NADH-quinone oxidoreductase, chain M [Oceanithermus profundus DSM 14977] Length = 490 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 173/464 (37%), Positives = 271/464 (58%), Gaps = 21/464 (4%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 ALG++ I SL V+ + F W+ S+H+G+DG+S+ V LT L Sbjct: 31 ALGVALFTLIASLGVYVAYPVSFGGFVSEFKLAWLPLVGSSFHVGLDGLSLPFVALTPLL 90 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 T +L+SW+ ++ F M L+L+ ++G F +LD+++F++FFE L+PM+ +I +W Sbjct: 91 TAVSVLASWRKTEKGFFALM---LLLQGALVGVFAALDLIVFFVFFELVLVPMYFMIALW 147 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW------EKKTSSIIDLYAMSKFP--FSI 207 G +R YAA KF +Y+ GS+FML A++ + K + +DL + + + Sbjct: 148 GYEQRRYAAVKFLIYSLVGSVFMLAAMLATAYLAAPALGKVSFDYLDLVSAAGYLALLPA 207 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 W++ F +F IK+P P HTWLP+AH QAPTAGS+FLAG++LKMGGYG IRF L LF Sbjct: 208 AGWLFWGFALAFLIKLPAVPLHTWLPHAHTQAPTAGSIFLAGLLLKMGGYGLIRFNLALF 267 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P + FA ++ ++L++I+Y + V++ Q D+K+LIA SS+ HMGYV +GI S G+ Sbjct: 268 PGELERFANLLAAVALVSIVYGAYVTLAQRDLKRLIANSSVNHMGYVLLGIASMTAVGLH 327 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 GA++QM++HG+++ +F VG++ DR HTR+I A G+ + P V+ + + +GLP Sbjct: 328 GAVYQMVAHGVITGLMFLMVGLLADRTHTREIAAMKGVYNAAPILGGVLWLALLGGLGLP 387 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAV--LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 G +GF+GEF + F T +A FG+V+ A LW ++V+ G K E L Sbjct: 388 GLAGFLGEFQSLWGGFLADVTRPYVWVAVFGIVILAGAMLWTIQRVLLG--KAEG--ALD 443 Query: 446 DLSLRERCMVYPIAVLTVFFGIYP---VPIRDTFSVPLSSIIEN 486 DL+ E P+ L V G+ P P D PL ++++ Sbjct: 444 DLNPVEVAAAAPLVFLAVLLGLVPAALTPWIDAGVQPLLTLVQE 487 >gi|218248571|ref|YP_002373942.1| NAD(P)H-quinone oxidoreductase subunit 4 [Cyanothece sp. PCC 8801] gi|218169049|gb|ACK67786.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 8801] Length = 560 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 154/413 (37%), Positives = 245/413 (59%), Gaps = 14/413 (3%) Query: 37 ALGISTINFIFSLFV-WSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 ALG+ +FI +V W+ +D +FQ+ E Y W+ S+ + VDGIS+ LV+L Sbjct: 38 ALGVGLADFILMCYVFWNNYDISNPTFQLTEKYAWLPQIGLSWAVSVDGISMPLVLLAGL 97 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T I ++W+ + + + L+L S IG F++ D+LL +I +E L+P+++++ + Sbjct: 98 VTTLSIFAAWQ-VDRKPKLFYFLMLLLYSAQIGVFVAQDLLLLFIMWELELVPVYLLVSI 156 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC---WEKKTSSIIDLYAMSKFPFSIQYWM 211 WGG +R YAA KF LYT SIF+L A + M + T I++L A +P +++ + Sbjct: 157 WGGQKRRYAAMKFLLYTAAASIFILIAALAMGIYGGGQMTFDIVEL-AAKNYPLALELPL 215 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 + +F +K+ +FP HTWLP+AH +A + S+ LAG++LKMG YG IR L + A Sbjct: 216 YAGLLIAFGVKLAIFPLHTWLPDAHGEASSPVSMILAGVLLKMGAYGLIRLNLEMLSDAH 275 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 YFAP++ L +I I+Y S Q+++K+ +AYSS++HMG+V IGI S G+ GAM Sbjct: 276 VYFAPILVVLGVINIVYGGFASFAQSNMKRRLAYSSVSHMGFVLIGIASFSDIGISGAML 335 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 Q++SHGL+++ LFF GV YDR HT + G + +P+ + + MA++ LPG SG Sbjct: 336 QLISHGLIAAVLFFLAGVTYDRTHTMLLDEMGDIGQVIPKVFALFTIGAMASLALPGMSG 395 Query: 392 FIGEFLVIMSVFQNS------NTVAV-LASFGVVLSALYSLWLYRKVVFGVSK 437 F E V + V TV V LA+ G++L+ +Y L + R++ +G K Sbjct: 396 FASEISVFVGVTSGDVYSSVFRTVTVFLAAVGLILTPIYLLSMLRQLFYGSDK 448 >gi|22294440|dbj|BAC08270.1| NADH dehydrogenase subunit 4 [Thermosynechococcus elongatus BP-1] Length = 514 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 164/467 (35%), Positives = 258/467 (55%), Gaps = 23/467 (4%) Query: 37 ALGISTINFIFSLFVWSVF-DKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTF 94 AL + I+F ++ ++ F D Q+ E Y WI + + +G DG+S+ L++LT F Sbjct: 23 ALAVGLIDFALIVYAFTNFYDLNTPGMQLWESYDWIPEIGLRWSVGADGLSMPLILLTGF 82 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T IL++W + R + L + I F DML+F++ +E LIP+++++ + Sbjct: 83 ITTLAILAAWP-VTLKPRLFYFLMLAMYGGQIAVFAVQDMLVFFLAWELELIPVYLLLAI 141 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWI 213 WGG +R YAA KF LYT S+F+L A + M + T S + A + Q ++ Sbjct: 142 WGGHKRQYAATKFILYTAGSSLFILVAGLAMAFYGDTVSFDMQTLAAKDYALGFQLLVYA 201 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 F ++ +K+P+ P HTWLP+AH +A + LAGI+LKMGGY IR + + P A Sbjct: 202 GFLVAYGVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALIRMNVDMLPAAHAK 261 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAPV+ L ++ IIYA+L S Q ++K+ IAYSSI+H+G+V IGI S G+ GA+ QM Sbjct: 262 FAPVLVILGVVNIIYAALTSYAQRNLKRKIAYSSISHIGFVLIGIASFTNLGMSGAVLQM 321 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +SHGL+ ++LFF VG YDR HT + GG+ M + + ++A++ LPG SGF+ Sbjct: 322 VSHGLIGASLFFLVGATYDRTHTLILEEMGGVGQKMKKIFAMFTACSLASLALPGMSGFV 381 Query: 394 GEFLVIMSVFQNSNT--------VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-- 443 E +V + F S+ V LA+ GV+L+ +Y L + R++ +G E V+ Sbjct: 382 AELMVFIG-FATSDAYSLPFRVIVVFLAAVGVILTPIYLLSMLREIFYGPENKELVEHEA 440 Query: 444 LKDLSLRE----RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 L D RE C++ PI + G+YP + + +I Sbjct: 441 LVDAEPREVFIIACLLVPI----IGIGLYPKLLTQIYDATTGQVIAR 483 >gi|302523888|ref|ZP_07276230.1| NADH dehydrogenase subunit I M [Streptomyces sp. AA4] gi|302432783|gb|EFL04599.1| NADH dehydrogenase subunit I M [Streptomyces sp. AA4] Length = 517 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 155/491 (31%), Positives = 262/491 (53%), Gaps = 43/491 (8%) Query: 24 SYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSY-HLGVD 82 ++L R+ AL +S + F+ + W+ + Q WI F + G D Sbjct: 19 AFLKGNDRAAVATALAVSIVEFLLVIPFWASYSPSGERIQQATTMDWIPSFGIHISFGTD 78 Query: 83 GISILLVVLTTFLTPFCI----LSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 GIS++++ + L P + L+ + ++ L+ E++ IG F + D+ LFY Sbjct: 79 GISLIMIAVIALLVPIVVGGLGLTDKLPAGRSAGGFLSLILLQEAITIGVFAATDVFLFY 138 Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV--------------V 184 + FE LIPM+ +IG +GG+ R YAA KFFLY+F G + ML + + Sbjct: 139 VLFEIMLIPMYFLIGGYGGANRQYAAVKFFLYSFLGGLIMLASAIGAYSLASDKLGGKGT 198 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 W + + D P Q W+++ FF +FAIK P+ PFHTWLP+A QAP + Sbjct: 199 FDWATLVTVVRDA------PTGTQIWLFLGFFLAFAIKAPLVPFHTWLPDAAGQAPIGVA 252 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 V L G++ K+G +G +R+ LP+FP S+ AP++ LS+I ++Y S+++ Q D+K+ IA Sbjct: 253 VLLVGVLDKVGTFGFLRYCLPMFPEGSKALAPLVLILSVIGVLYGSILAAGQQDMKRFIA 312 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 Y SIAH G++ +GIF+ + + G++ ML+H L + L +G+I R + I YGG Sbjct: 313 YVSIAHFGFIALGIFTFNEQAMVGSVSYMLNHSLSTGMLIVVIGLIVMRGGSSRISDYGG 372 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + P ++++ ++ + LPGT+ F+ EFLV++ F + +LA+ G+VL+A Y Sbjct: 373 MAKVTPLLGGMLLLAGLSALSLPGTNSFVSEFLVLLGSFVDQPVYTILATVGMVLAAAYV 432 Query: 425 LWLYRKVVFGVSKCEKV------------------QQLKDLSLRERCMVYPIAVLTVFFG 466 LWLY++++ G + + + + + DL RE ++ P+ +L + G Sbjct: 433 LWLYQRIMQGPVRGDALVGVGGGPGTAIAPELGARKAITDLGKREIAILAPLVILIIGLG 492 Query: 467 IYPVPIRDTFS 477 YP P+ DT + Sbjct: 493 FYPKPMLDTIT 503 >gi|320105155|ref|YP_004180746.1| proton-translocating NADH-quinone oxidoreductase subunit M [Isosphaera pallida ATCC 43644] gi|319752437|gb|ADV64197.1| proton-translocating NADH-quinone oxidoreductase, chain M [Isosphaera pallida ATCC 43644] Length = 556 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 158/464 (34%), Positives = 254/464 (54%), Gaps = 29/464 (6%) Query: 55 FDKGRSSFQMIEYYHWIDYFCSYHL----GVDGISILLVVLTTFLTPFCILSSWKSIQEN 110 F G +Q + W+ + G+DG+S+ L L LT +L+SW+ + E Sbjct: 52 FPAGTEGYQHVLRVPWLTLGQGAQIQFAFGLDGVSLWLFTLAPLLTLTAVLASWEVVTER 111 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 Y L+L + ++G F SLD++LFY+FFE +LIP F +IG+WGG +R AA F LY Sbjct: 112 SSAYYGLMLMLCAGMMGVFASLDVVLFYVFFEFTLIPGFFLIGLWGGPQRREAAVTFVLY 171 Query: 171 TFFGSIFMLFAIVVMC--------WEKKTSSIIDLYAM--------------SKFPFSIQ 208 T GS+ L +V + T SI +L A+ S + Q Sbjct: 172 TLAGSLLTLVGVVALVAIAHQYGEGRPLTFSIPELTAILSNLNWSAWNRSGGSLLQPTPQ 231 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 +++ FA+K P+ PFH WLP A+ QAPT ++ L+G + K+G YG IRF L + P Sbjct: 232 ALVFLLLLAGFAVKTPIVPFHGWLPAAYTQAPTPVTILLSGGLSKLGAYGLIRFNLGMTP 291 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 L FA + L+++ I+Y +LV++ Q ++K ++AYSS++HMG++ +G+ + + ++G Sbjct: 292 LGLVDFAEPLAVLAVVGILYGALVALAQPNLKSMVAYSSLSHMGFIVLGLVALNPTALDG 351 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 A+ QM++HG+ S+ALF V +I R T D+ G+ +P AV +++ + + GLPG Sbjct: 352 AVVQMVNHGISSAALFLGVALIQRRYQTADMDLVQGVWSKIPALAVFVIIAALGSAGLPG 411 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 +GF+GEF ++ F+ + V A+ G++L A Y + + R V+FG + V++ + LS Sbjct: 412 LNGFVGEFPILAGAFEYRAAIGVFAALGMILGAWYLIGMVRNVMFGPASPRVVERSRSLS 471 Query: 449 LRERCMVYPIAVLTVFFGIYPVPIRDTFS---VPLSSIIENYTL 489 E P+ LTV GI P + D S VP + IE+ L Sbjct: 472 PVELAAFLPVTALTVLLGIAPALVLDKMSPALVPTAQRIEHARL 515 >gi|107735868|ref|YP_626455.1| NADH dehydrogenase subunit 4 [Metarhizium anisopliae] gi|77812386|gb|AAW58825.1| NADH dehydrogenase subunit 4 [Metarhizium anisopliae] Length = 484 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 174/488 (35%), Positives = 283/488 (57%), Gaps = 30/488 (6%) Query: 12 LPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 +P +G ++ SY +AL + IN I SL ++ +F+ + FQ ++ ++ Sbjct: 9 VPLIGTIIVSTIDSYYKSTEVYTKTIALIATVINLIISLVMFILFNNSTNQFQFVQEHYN 68 Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 + F Y LGVDGIS+ V+LTT + P ILS+W SI+EN R Y+I L+LE++++ F+ Sbjct: 69 VQLFDIY-LGVDGISVYFVLLTTLIMPIAILSNWDSIKENVRAYLIIMLLLETLLLAVFM 127 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 LD++ FYIFFE+ L P+F+++G++G ++ A+Y FLYT +GS+F+L +I+ Sbjct: 128 VLDIMSFYIFFESILPPLFILVGIFGSDNKVSASYYLFLYTLWGSLFLLLSILSTSSIMG 187 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L+ ++ F + Q +++I F +FA+K P + WL AHV++P GS+ LA I Sbjct: 188 STDFDTLFKLN-FEYKTQVFLFIGIFIAFAVKTPTIFLNNWLLKAHVESPLGGSIVLAAI 246 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+ YG R +LP+ P A+ + VI+ +++I IIYAS ++ TD+K+LIAYSS+ H Sbjct: 247 VLKLSLYGIFRIILPILPKAALDYTFVIYTIAVITIIYASFSTIRTTDVKELIAYSSVCH 306 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNM 369 IG FS G+EG++ L+HG VSS LF C G++YDR TR IF Y G M Sbjct: 307 AAVYLIGAFSNTIQGIEGSIILGLAHGFVSSGLFICAGGILYDRTGTRSIFFYRGAAQLM 366 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIG--EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P ++ + + + N G P T F+G E L ++ VF S+ +V SA Y++++ Sbjct: 367 PIFSTLFFILALGNCGAPLTVNFVGFLEKLPVLGVFACSS---------IVFSAAYTIYM 417 Query: 428 YRKVVFGVSKCEKVQQ---------LKDLSL--RERCMVYPIAVLTVFFGIYPVPIRDTF 476 + + + E +Q +K+ S+ E M++ + V TV FGIYP I + Sbjct: 418 FNR----TASVEHLQDSYKKVYTTYIKENSILCHEFLMLFILVVFTVVFGIYPSLILNVL 473 Query: 477 SVPLSSII 484 ++S+I Sbjct: 474 DYSMNSLI 481 >gi|290486849|gb|ADD29809.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Antirrhinum majus] Length = 500 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 158/444 (35%), Positives = 261/444 (58%), Gaps = 14/444 (3%) Query: 2 NLPFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P L+I+ LP FLG +I F + G ++ + + I + I F + F S Sbjct: 3 HFPCLTIIVVLPIFLGS-LIFFLPHRGNRVTRWYTICICILELLLITYAFCYH-FQSDDS 60 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q++E Y+WID+F + LG+DG+SI ++LT F+T LS+W +++ R + L Sbjct: 61 LLQLVEDYNWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLSAWPVTRDS-RVFNFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 120 AMYSGQIGLFSSRDLLLFFLMWELELIPVYLLVSMWGGKKRLYSATKFILYTAGGSIFLL 179 Query: 180 FAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + + + + D+ A +P +++ ++I FF +FA+K+P+ P HTWLP+ H Sbjct: 180 MGVLGIGLYGSNEPTLNFDILANQAYPLALEIILYIGFFIAFAVKLPIIPLHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG +R + FP A F+P + + + IIYA+ S+ Q Sbjct: 240 EAHYSTCMLLAGILLKMGAYGLVRINMEFFPHAHSIFSPWLMIVGAMQIIYAASTSLGQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 300 TLKKRIAYSSVSHMGFLIIGISSITDMGLNGALLQIISHGFIGAALFFLAGTTYDRIRLV 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ MP+ + F+MA++ LPG SGF+ E LV + + + Sbjct: 360 YLDEMGGIAILMPKIFTMFSSFSMASLALPGMSGFVSELLVFFGLITSQKYLLITKVVIT 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFG 434 + + G++L+ +Y L + R++ +G Sbjct: 420 FVMAIGMILTPIYLLSMLRQMFYG 443 >gi|317121165|ref|YP_004101168.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermaerobacter marianensis DSM 12885] gi|315591145|gb|ADU50441.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermaerobacter marianensis DSM 12885] Length = 516 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 174/513 (33%), Positives = 266/513 (51%), Gaps = 32/513 (6%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 +LP+LS++ +P G + L R+ + + + VW+ FD Sbjct: 4 SLPYLSLIVGVPAAGALLTLLIPR--DNHRAIRLLGTVALALPLLLVAAVWAGFDPAAGG 61 Query: 62 FQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q +E Y WI + Y+LGVDG+S+ LV LT + P L+SW I+ +EY + + Sbjct: 62 PQFVERYRWIPTLGAWYYLGVDGLSLPLVALTALVAPLAALASW-GIEHRVKEYWVLLGL 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L + + G FL+LD LLFY+FFE SLIPM+ +IG+WGG R YA+ KFF+YT GSI ++ Sbjct: 121 LVTGIFGVFLALDYLLFYVFFELSLIPMYFLIGIWGGPRRDYASLKFFIYTLVGSIVLIV 180 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA----IKIPMFPFHTWLPNAH 236 I+ + + S+ + + P ++ + + F IK PM+P HTWLP+AH Sbjct: 181 GILGLYFLTGASTFDMVELARRAPAAVPPALKLPLFLLLFAGFAIKTPMWPVHTWLPDAH 240 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+APT SV LA ++LKMG YG +R P P ++ A + L++IAI+Y + ++ Q Sbjct: 241 VEAPTPISVILAAVLLKMGTYGMMRITWPTLPDVARDLAGTLAALAVIAILYGAFTALGQ 300 Query: 297 TDIKKLIAYSSIAHMGYVTIG-----------------------IFSGMKSGVEGAMFQM 333 D K+L+AYSS++ MG+V + + +S A+F M Sbjct: 301 RDFKRLVAYSSVSQMGFVVLALAAAAMAPAAAEAAQLAGRDPQVVLEAGQSATMAAVFMM 360 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL S+ LF VG YDR HTRD GG+ P A + + AN+GLPG S FI Sbjct: 361 VAHGLASALLFLLVGFWYDRTHTRDFDRLGGMFRTTPVAATFLGIAAFANLGLPGFSTFI 420 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 GEF ++ T +A G+V +A+Y+L + ++V G K E L D++ RE Sbjct: 421 GEFFTLLGTLPVFPTAVYVALVGLVGAAMYNLTMLQRVTMGPPKPEW-HGLPDVTPRELV 479 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 P+ + G P + S P++ + Sbjct: 480 TFVPLVAAMLLLGWMPGLLTQVLSTPVAQFVAK 512 >gi|150026250|ref|YP_001297076.1| NADH dehydrogenase I, M subunit [Flavobacterium psychrophilum JIP02/86] gi|149772791|emb|CAL44275.1| NADH dehydrogenase I, M subunit [Flavobacterium psychrophilum JIP02/86] Length = 479 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 165/461 (35%), Positives = 275/461 (59%), Gaps = 11/461 (2%) Query: 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISI 86 G + VAL S + + S+F+ + +++G +S I +WI Y L VDG+S+ Sbjct: 20 AGDKLAKTVALFFSLASIVGSIFILNQYNQGINS-DFIA--NWISNPNLYIALKVDGLSL 76 Query: 87 LLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLI 146 +++LTT LT I SS+ + +N + + L + ++G FLS D L+YIF+E SLI Sbjct: 77 AMLLLTTVLTSIIIFSSFGNEYKNSKSFYALVLFMSFAMVGTFLSADAFLYYIFWELSLI 136 Query: 147 PMFVIIGVWGGSE---RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF 203 P++ I +WG + R A KFF+YT GS+FML A + + + + I DLYA+ Sbjct: 137 PIYFIALIWGSGDPEARKKAVIKFFIYTLAGSLFMLVAFIYLFQKVGSLMIGDLYAI-HL 195 Query: 204 PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFL 263 Q+W+++A F ++AIKIP+ PFHTW N + ++P G++ L+GIMLKMG Y IR+ Sbjct: 196 TNQEQFWIFLAMFLAYAIKIPIIPFHTWQANVYQKSPAVGTMLLSGIMLKMGLYSVIRWQ 255 Query: 264 LPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMK 323 LP+ P A++ + P++ LS+ ++Y S+V++ Q +IKKL+AYSS+AH+G + G ++ Sbjct: 256 LPIAPFAAKMYMPILIGLSIAGVVYGSIVALQQRNIKKLLAYSSLAHVGLIAAGAYTLTL 315 Query: 324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMAN 383 G+ GA+ QM++HG V LFF VI R +T++I GG+ ++A + M+ +A+ Sbjct: 316 DGLRGAVLQMIAHGFVVVGLFFAAEVIERRFNTQEIAEMGGIRIQDNKFASMFMIVMLAS 375 Query: 384 MGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ 443 + LPGT F+GEF ++ S++ + AV+A ++L A+Y L +++ V+ G + + Sbjct: 376 VALPGTFNFVGEFTLLYSLYSANIWFAVIAGTTIILGAVYMLKMFQHVMLGEANA---KT 432 Query: 444 LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 K ++ E + I V+ +FFG++ PI D + L I+ Sbjct: 433 FKSITANESIVFVVIIVVLLFFGLFSKPITDLVTPALQEIL 473 >gi|332662325|ref|YP_004445113.1| proton-translocating NADH-quinone oxidoreductase subunit M [Haliscomenobacter hydrossis DSM 1100] gi|332331139|gb|AEE48240.1| proton-translocating NADH-quinone oxidoreductase, chain M [Haliscomenobacter hydrossis DSM 1100] Length = 478 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 168/463 (36%), Positives = 276/463 (59%), Gaps = 14/463 (3%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRSSFQMIEYYH 69 F P +G F++ L G + AL IS + S+++ WS G F+M Sbjct: 8 FSPIIGGFIL----TLFPGSSATRWQALFISAVTAALSVYMAWSFVPTGGIQFEM--NLA 61 Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 W+ YH+G DGIS++L++LT L+P +LS++K E+ Y L+++ + G Sbjct: 62 WLPSLGIGYHVGADGISMVLLLLTNLLSPLILLSTFKQKNESEGLYYGLMLMMQGAMTGV 121 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC-- 186 F++LD+ L+YIF+E +LIP + ++ +WG + A KFF+YT GS+ ML AI+ + Sbjct: 122 FVALDLFLYYIFWELALIPAYFLVLLWGSGQHRKTALKFFIYTLLGSLLMLVAIIFLSQQ 181 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 W + I +++++S P + ++ +AF ++AIKIP+FPFHTW P+ + QAPTAG++ Sbjct: 182 WSPASFDISNVHSVSLSP-EAETFVLLAFMLAYAIKIPLFPFHTWQPDTYTQAPTAGTML 240 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 L+GIMLKMG Y IR++LP+ P A + +L +I I YAS++++ Q D+K+L AYS Sbjct: 241 LSGIMLKMGLYSIIRWVLPVAPNALMEHRTWMIWLIVIGIAYASIIAIQQKDLKRLFAYS 300 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 SIAH+G + GI + G+ G+M QM++HG+ + LF+ ++ +R T +I A GG+ Sbjct: 301 SIAHVGLIAAGILTMSTEGLMGSMLQMVAHGINAVGLFYICAILMERTQTNEIAALGGIR 360 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 + P +A V + ++ LP T+GF GEF+++ S+FQ + +++A GV+L A+Y Sbjct: 361 NIAPWFATTYFVVLLGSVALPLTNGFPGEFMLLSSLFQLNWGWSLVAGSGVILGAVYMFK 420 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Y+ V+ G + KV DL ++ ++ PI + V GI P Sbjct: 421 SYQGVMLGET---KVSSFSDLDNWDKAILIPIVIAIVLMGILP 460 >gi|88807735|ref|ZP_01123247.1| proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus sp. WH 7805] gi|88788949|gb|EAR20104.1| proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus sp. WH 7805] Length = 499 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 166/475 (34%), Positives = 265/475 (55%), Gaps = 26/475 (5%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L+I+ +PFLG VI G+ F +AL I ++S + F G + Q++ Sbjct: 2 LTILLLIPFLGALVISVLPPEDSGKNRF--LALLTLAIQCVYSFALLIPFQAGEAGQQLV 59 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQENFREYMIAFLVLE 122 + W+ + LGVDG+S+ LV++ L C+++++ +S+ R Y LV+ Sbjct: 60 DSVPWLPVVGLEFSLGVDGLSLPLVLMNGVL---CLVAAFASRSVDNRSRLYFSLLLVIS 116 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 V GAFL+ ++LLF+IF+E LIP++++I +WGG+ R YA+ KF + T + +L A Sbjct: 117 GAVNGAFLAQNLLLFFIFYELELIPLWLLIAIWGGANRAYASTKFLIITAVSGVLILGAF 176 Query: 183 VVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + + ++ I + + Q + A F IKIP+FPFHTWLP+AH +A T Sbjct: 177 LGIALVTGSADFGIRPILVGQMSLFTQLLLMGALLVGFGIKIPLFPFHTWLPDAHTEAST 236 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 SV LAG++LK+G YG +RF L LFP A AP + + I+++Y SL ++ QTD+K+ Sbjct: 237 PVSVLLAGVLLKLGTYGLLRFCLGLFPEAWSVAAPWLAGWAAISVLYGSLAAIAQTDMKR 296 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 ++AYSS+ HMGYV + + + GA+FQM+SHGL+S+ LF VG++Y + TRD+ Sbjct: 297 MVAYSSVGHMGYVLLAAAAATPLAIMGALFQMVSHGLISAVLFLAVGIVYQQTGTRDLNV 356 Query: 362 YGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 GL++ +P +M++ MA+ G+PG +GFI EFLV F++ +L+ G Sbjct: 357 LRGLLNPQRGLPLTGTLMIIGVMASAGIPGMAGFIAEFLVFKGSFEHFPLATLLSMVGSG 416 Query: 419 LSALYSLWLYRKVVFG--------------VSKCEKVQQLKDLSLRERCMVYPIA 459 L+A+Y L L + FG + K QQL LS+ ++ +A Sbjct: 417 LTAVYFLLLVNRAFFGRLATAPGETLNPNILDKVPLFQQLPALSMSALILILGLA 471 >gi|157325583|ref|YP_001468361.1| NADH dehydrogenase subunit 4 [Ipomoea purpurea] gi|193806243|sp|A7Y3L2|NU4C_IPOPU RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|157056811|gb|ABV02401.1| NADH-plastoquinone oxidoreductase subunit 4 [Ipomoea purpurea] Length = 503 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 164/474 (34%), Positives = 263/474 (55%), Gaps = 24/474 (5%) Query: 7 SIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIE 66 SIV FLP G VI + + C + L I+T F F F Q+ E Sbjct: 19 SIVFFLPHKGNRVIRWYTLCICI------LELLITTYTFCFH------FQVDDPLIQLEE 66 Query: 67 YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 Y WI++F C + LG+DG+S+ ++LT F+T L++ + + + R + L + S Sbjct: 67 TYKWINFFDCHWRLGIDGLSVGPILLTGFITTLATLAA-RPVTRDSRLFHFLMLAMYSGQ 125 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM 185 IG F S D+ LF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L ++ + Sbjct: 126 IGLFASRDLFLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGVLGL 185 Query: 186 CWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + +P +++ +I FF +FA+K P+ P HTWLP+ H +A + Sbjct: 186 TLYGSNEPTFNFETSVNQSYPAALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEAHYST 245 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 + LAGI+LKMG YG IR + LFP A F+P + + I +IYA+L S+ Q ++K+ I Sbjct: 246 CMLLAGILLKMGAYGLIRINMELFPHAHSLFSPYLVIVGTIQMIYAALTSLGQRNLKRRI 305 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + G Sbjct: 306 AYSSVSHMGFIIIGIGSMTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLDEMG 365 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV-------FQNSNTVAVLASFG 416 G+ MP+ + F+MA++ LPG SGF+ E LV + F + ++ + + G Sbjct: 366 GIAIQMPKIFTMFSSFSMASLALPGMSGFVAELLVFFGIISAKKYLFMSKILISFVMAIG 425 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++L+ +YSL + R++ +G D RE + I + + G+YP Sbjct: 426 IILTPIYSLSMLRQMFYGYKLFNAPNSSFLDSGPRELFLSISILLPVIGIGMYP 479 >gi|148240616|ref|YP_001226003.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. WH 7803] gi|193806234|sp|A5GP41|NU4C_SYNPW RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|147849155|emb|CAK24706.1| NAD(P)H-quinone oxidoreductase chain 4-1 [Synechococcus sp. WH 7803] Length = 551 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 171/502 (34%), Positives = 278/502 (55%), Gaps = 27/502 (5%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRSSF 62 P+LS+ P +G ++ F G GR+ + ALGI+ F+ ++ + + +D S Sbjct: 26 PWLSLSILFPIVGSLMVPFIPDQGDGRQVRW-FALGIALTTFLITVAAYLNGYDPSFSGL 84 Query: 63 QMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E W+ + ++ +G DG+S+ L++LT+F+T +L++W F+ + FL+L Sbjct: 85 QLSERVSWLPNLGLTWAVGADGLSMPLILLTSFITTLAVLAAWPV---TFKPKLFFFLML 141 Query: 122 --ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + I F DMLLF++ +E L+P+++++ +WGG +R YAA KF LYT S+F+L Sbjct: 142 AMDGGQIAVFAVQDMLLFFLAWELELLPVYLLLAIWGGKKRQYAATKFILYTAGSSLFIL 201 Query: 180 FAIVVMCWEKKTSSIID--LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A + M + + + + A F S Q + +F +K+P+ P HTWLP+AH Sbjct: 202 LAALAMGFMGGGTPNFEYAVLAQKGFSTSFQLLCYAGLLIAFGVKLPIVPLHTWLPDAHG 261 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +RF + P A FAP++ L ++ IIYA+L S Q Sbjct: 262 EATAPVHMLLAGILLKMGGYALMRFNAEMLPDAHAQFAPLLVVLGVVNIIYAALTSFAQR 321 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR HT Sbjct: 322 NLKRKIAYSSISHMGFVLIGIGSFSALGTSGAMLQMISHGLIGASLFFLVGATYDRTHTL 381 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ M + V ++A++ LPG SGF+ E +V + + Sbjct: 382 QLDEMGGVGQKMRIMFALWTVCSLASLALPGMSGFVSELMVFTGFATDEAYTLTFRIVID 441 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ--QLKDLSLRE----RCMVYPIAVLTVF 464 LA+ GV+L+ +Y L + R++ FG + L D RE C++ PI + Sbjct: 442 GLAAVGVILTPIYLLSMLREIFFGKENVQLASNTNLVDAEPREVYIIGCLLVPI----IG 497 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G+YP + D++ + ++++ Sbjct: 498 IGLYPRLMTDSYRTAIEALVDR 519 >gi|298490911|ref|YP_003721088.1| proton-translocating NADH-quinone oxidoreductase subunit M ['Nostoc azollae' 0708] gi|298232829|gb|ADI63965.1| proton-translocating NADH-quinone oxidoreductase, chain M ['Nostoc azollae' 0708] Length = 493 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 173/440 (39%), Positives = 261/440 (59%), Gaps = 7/440 (1%) Query: 35 GVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTT 93 GVAL + I F++++F+ FD G Q E WID +Y+LG+DG+S+ L++L Sbjct: 31 GVALAFAVIIFLWTVFLTIEFDPGEVGQQFAESLPWIDALGLNYNLGIDGLSLPLLLLNG 90 Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 LT I S +SIQ R Y L+L + VIGAFL+ D+LLF++F+E LIP++++I Sbjct: 91 VLTCIAIYSGDESIQRP-RFYYSLVLLLSAGVIGAFLAQDLLLFFLFYELELIPLYLLIA 149 Query: 154 VWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMW 212 +WGG++R YAA KF +YT I +L + + M W + S + P Q + Sbjct: 150 IWGGAKRGYAATKFLIYTSVSGILILASFLGMVWLSDSPSFGLATLNTHTLPLGTQILLL 209 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 + F IKIP+ PFHTWLP+AHV+A T SV LAGI+LK+G YG +RF + L P A + Sbjct: 210 VGILVGFGIKIPLVPFHTWLPDAHVEASTPISVLLAGILLKLGTYGLLRFGMNLLPEAWE 269 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 Y AP + +++++++ + ++ QTD+KK++AYSSI HMGYV + + V GA+ Q Sbjct: 270 YAAPTLATWAVVSVLFGASCAIAQTDMKKMVAYSSIGHMGYVLLAAAAATPLSVLGAVMQ 329 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGT 389 M+SHGL+S+ LF VGV+Y + +RD+ GL++ MP +M++ MA+ G+PG Sbjct: 330 MISHGLISAMLFLVVGVVYKKAGSRDLEVIRGLLNPERGMPVIGFLMVLGVMASAGIPGM 389 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 GFI EF+V F+ +++ G L+A+Y L L + FG +V L + Sbjct: 390 VGFISEFIVFRGSFEIFPVQTLISMLGTGLTAVYFLILLNRAFFG-RLSAQVTNLPRVYW 448 Query: 450 RERCMVYPIAVLTVFFGIYP 469 +R + +AVL V FGI P Sbjct: 449 SDRIPAFILAVLIVVFGIEP 468 >gi|320354151|ref|YP_004195490.1| proton-translocating NADH-quinone oxidoreductase subunit M [Desulfobulbus propionicus DSM 2032] gi|320122653|gb|ADW18199.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfobulbus propionicus DSM 2032] Length = 506 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 161/472 (34%), Positives = 269/472 (56%), Gaps = 15/472 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ FLP + V+L S R F G+ + +ST+ + SL ++ F K + I Sbjct: 6 LSVIIFLPIIAGLVLLASPASRTIAR-FTGLIISLSTL--VLSLDLYLGF-KSTGHLEFI 61 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E WI+ SY LGVDGIS+ +++ + L P L + Y L+++ Sbjct: 62 ENVPWIESLGISYALGVDGISLFILMACSVLLPMVYLI----FGTKEKGYYANLLIVQGA 117 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 + GA + DM+LFYIF+E L+P+F ++G++GG++R+ A K +YT GS+ ML AIV Sbjct: 118 MTGAVCATDMILFYIFWEIMLLPVFFMLGLYGGAKRLPATLKITIYTIAGSLLMLAAIVY 177 Query: 185 MCWE-----KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + S ++ A + + F +FAIKIP+FPFHTWLP+A+ +A Sbjct: 178 LGVSYHAQFNEWSFAMNKMAQLNLSGQVAAVAFFGFMIAFAIKIPLFPFHTWLPDAYTEA 237 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTA + L+ IM K+G YG IRF++P+F FA ++ + +I ++Y + ++ Q D Sbjct: 238 PTAATFVLSAIMAKIGVYGVIRFVVPVFDQEFARFAILLAYAGVIGMMYCGIAAIAQKDF 297 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+++A+SS +HMG + +G+F + G+++Q+++H + LF G++ +R TR I Sbjct: 298 KRMLAFSSASHMGVIALGVFCMNVQALTGSIYQIVAHATSTGVLFLFAGILEERTETRTI 357 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GG+ P +A+ + +A++GLPGTSGFIGEF++I+ + + + VLA+ +++ Sbjct: 358 EDLGGIAAKAPVFALFFAIAMLASVGLPGTSGFIGEFMIILGAIKFNTAIGVLAATTLIV 417 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 Y LW++++V F S + KDL+L E P+ +L + GIYP P Sbjct: 418 GVCYMLWMFQRVFFEKSTATS-ENFKDLTLVEGLTFLPVILLIIIMGIYPQP 468 >gi|170665192|gb|ACB29136.1| NADH dehydrogenase subunit D [Centaurea melitensis] Length = 500 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 167/496 (33%), Positives = 276/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +ILF + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLILFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ ++IAFF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIILYIAFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGISSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSSVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|215447446|ref|ZP_03434198.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis T85] gi|289759287|ref|ZP_06518665.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis T85] gi|289714851|gb|EFD78863.1| NADH dehydrogenase subunit M [Mycobacterium tuberculosis T85] Length = 548 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 178/512 (34%), Positives = 272/512 (53%), Gaps = 47/512 (9%) Query: 26 LGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDG 83 L GRR + +S + S+ V + F +Q +E + WI F Y LGVDG Sbjct: 19 LPPGRRRLAKWAGMVVSVLTLAVSIVVAAEFKPSAEPYQFVEKHSWIPAFGAGYTLGVDG 78 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQE-----------------------------NFREY 114 I+++LV+LTT L P +++ W + Y Sbjct: 79 IAVVLVLLTTVLIPLLLVAGWNDATDADDLSPASGRYPQRPAPPRLRSSGGERTRGVHAY 138 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFF 173 + L +ESMV+ + ++LD+LLFY+FFEA LIPM+ +IG +G G+ R AA KF LY F Sbjct: 139 VALTLAIESMVLMSVIALDVLLFYVFFEAMLIPMYFLIGGFGQGAGRSRAAVKFLLYNLF 198 Query: 174 GSIFMLFAI-----VVMCWEKKT---SSIIDLYAMSKFPFSIQYW--MWIAFFCSFAIKI 223 G + ML A+ V ++ T I+ A ++ + +++ F +FAIK Sbjct: 199 GGLIMLAAVIGLYVVTAQYDSGTFDFREIVAGVAAGRYGADPAVFKALFLGFMFAFAIKA 258 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 P++PFH WLP+A V++ A +V + +M K+G +G +R+ L LFP S YF P+I L++ Sbjct: 259 PLWPFHRWLPDAAVESTPATAVLMMAVMDKVGTFGMLRYCLQLFPDPSTYFRPLIVTLAI 318 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 I +IY ++V++ QTD+ +LIAY+SI+H G++ GIF G G+ ML+HGL ++A+ Sbjct: 319 IGVIYGAIVAIGQTDMMRLIAYTSISHFGFIIAGIFVMTTQGQSGSTLYMLNHGLSTAAV 378 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 F G + R +R I YGG+ P A MV MA + LPG + FI EFLV++ F Sbjct: 379 FLIAGFLIARRGSRSIADYGGVQKVAPILAGTFMVSAMATVSLPGLAPFISEFLVLLGTF 438 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 A +VLSA+Y LWLY++V+ G E +++ DL RE +V P+ L + Sbjct: 439 SRYWLAAAFGVTALVLSAVYMLWLYQRVMTG-PVAEGNERIGDLVGREMIVVAPLIALLL 497 Query: 464 FFGIYPVPIRDTFSVPLSSIIENYTLKTGYSD 495 G+YP P+ D ++ +EN G D Sbjct: 498 VLGVYPKPVLDI----INPAVENTMTTIGQHD 525 >gi|88807081|ref|ZP_01122593.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. WH 7805] gi|88788295|gb|EAR19450.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. WH 7805] Length = 556 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 169/502 (33%), Positives = 280/502 (55%), Gaps = 27/502 (5%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRSSF 62 P+LS+ P +G ++ F G GR+ + ALGI+ F+ ++ + + +D S Sbjct: 26 PWLSLSILFPIVGSLMVPFIPDQGDGRQVRW-FALGIALTTFLITVAAYLTGYDPSFSGL 84 Query: 63 QMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E W+ + ++ +G DG+S+ L++LT+F+T +L++W F+ + FL+L Sbjct: 85 QLSERVSWLPNLGLTWAVGADGLSMPLILLTSFITALAVLAAWPV---TFKPKLFFFLML 141 Query: 122 --ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + I F DMLLF++ +E L+P+++++ +WGG +R YAA KF LYT S+F+L Sbjct: 142 AMDGGQIAVFAVQDMLLFFLAWELELLPVYLLLAIWGGKKRQYAATKFILYTAGSSLFIL 201 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM--WIAFFCSFAIKIPMFPFHTWLPNAHV 237 A + M + + + +++ FS + + + +F +K+P+ P HTWLP+AH Sbjct: 202 LAALAMGFMGGGAPSFEYSVLAQKGFSTNFQLLCYAGLLIAFGVKLPIVPLHTWLPDAHG 261 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +RF + P A FAP++ L ++ IIYA+L S Q Sbjct: 262 EATAPVHMLLAGILLKMGGYALMRFNAEILPEAHAQFAPLLVVLGVVNIIYAALTSFAQR 321 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR HT Sbjct: 322 NLKRKIAYSSISHMGFVLIGIGSFSALGTSGAMLQMISHGLIGASLFFLVGATYDRTHTL 381 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ M + V ++A++ LPG SGF+ E +V + + Sbjct: 382 QLDEMGGVGQKMRIMFALWTVCSLASLALPGMSGFVSELMVFTGFATDEAYTLSFRIVID 441 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ--QLKDLSLRE----RCMVYPIAVLTVF 464 LA+ GV+L+ +Y L + R++ FG + L D RE C++ PI + Sbjct: 442 GLAAVGVILTPIYLLSMLREIFFGKENVQLASNTNLVDAEPREVYIIGCLLVPI----IG 497 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G+YP + D++ + ++++ Sbjct: 498 IGLYPRLMTDSYRTAIEALVDR 519 >gi|300711691|ref|YP_003737505.1| NADH dehydrogenase-like complex subunit M [Halalkalicoccus jeotgali B3] gi|299125374|gb|ADJ15713.1| NADH dehydrogenase-like complex subunit M [Halalkalicoccus jeotgali B3] Length = 510 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 159/464 (34%), Positives = 259/464 (55%), Gaps = 32/464 (6%) Query: 36 VALGISTINFIFSLFVWSVFDKGR------SSFQMIEYYHWI---DYFCSYHLGVDGISI 86 VA +S + SL++W+ FD S+ WI Y ++H+G+DG+S Sbjct: 28 VAFVLSLLPLAGSLYMWTRFDASGNALLEGSTVAFETQAQWIALDPYAINWHVGLDGVSF 87 Query: 87 LLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLI 146 L+VLTT L P I+S+W IQE ++ L +E+ +IG F +LD ++++F+EA LI Sbjct: 88 PLLVLTTVLVPLAIMSAWTPIQERISQFYGLVLFMEASLIGVFSTLDFFVWFVFWEAVLI 147 Query: 147 PMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF--- 203 PM+++IGVWGG R YAA KFF+YT S+ M + + + S + + M++ Sbjct: 148 PMYLLIGVWGGPRRKYAAIKFFVYTNVASLVMFIGFITLVFALGDS--VTSFGMAEITQA 205 Query: 204 -------------PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 P ++ ++A F FA+K+P+FP HTWLP+AHV+APT SV LAG+ Sbjct: 206 LHNGELSGVAGLGPDTVALLCFVAIFFGFAVKVPIFPVHTWLPDAHVEAPTPVSVLLAGV 265 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LKMG Y +RF + + A I L + ++IY +++++ Q D+K+++AYSSI+ Sbjct: 266 LLKMGTYALLRFNFTMLYDVAAALAVPIAALGVFSVIYGAMLALAQQDLKRIVAYSSISS 325 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MGYV +G+ + G+ GA FQM++HGL+S +F VGVIY+ HTR + G+ MP Sbjct: 326 MGYVILGLVAFTVYGIGGATFQMVAHGLISGLMFMAVGVIYNATHTRMVGDISGMADRMP 385 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-----NTVAVLASFGVVLSALYSL 425 +++ MGLP +GF GEF++ + FQ++ +A FG+V+ A Y L Sbjct: 386 IAVGILIAAAFGYMGLPLMAGFAGEFMIFLGAFQSTVLPSAPIFTAVAMFGIVIVAGYLL 445 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + ++ +FG + ++ L + ++ + L + G+ P Sbjct: 446 FAMQRTLFGEYRLATDYEVTRAPLHDVVPLFVLIGLIILLGVDP 489 >gi|170665182|gb|ACB29131.1| NADH dehydrogenase subunit D [Barnadesia spinosa] Length = 500 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 166/498 (33%), Positives = 275/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 NLP+L+I+ LP +I F + G R + I + + + + + F Sbjct: 3 NLPWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDP 60 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 61 LIQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 120 AMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLL 179 Query: 180 FAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H Sbjct: 180 MGVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q Sbjct: 240 EAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 300 NLKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLV 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 360 YLDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIVIT 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 420 FVMAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 480 DFVLSLSVDKVEGILSNY 497 >gi|300114504|ref|YP_003761079.1| proton-translocating NADH-quinone oxidoreductase subunit M [Nitrosococcus watsonii C-113] gi|299540441|gb|ADJ28758.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus watsonii C-113] Length = 495 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 165/434 (38%), Positives = 266/434 (61%), Gaps = 10/434 (2%) Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 G+ ++ + WI F +HL +DG+S+LLV+LT FL + +SW I+ + Sbjct: 57 AGQGAWLAQLNWPWITRFGIRFHLALDGLSLLLVLLTCFLGLITVAASWSEIKHRVGFFH 116 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L + V+G F++LD+ LF++F+E L+PM+ +I +WG R+ A++KFFL+T Sbjct: 117 FNVLWTLAGVLGVFMALDLFLFFLFWELMLVPMYFLIAIWGHEHRLPASFKFFLFTQGSG 176 Query: 176 IFMLFAIVVMCWEKKTSSII------DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 + +L AI+ + W + S + DL S P + +W + FF +F +K+P PFH Sbjct: 177 LLLLIAILTLVWSQFQHSGVLTFNYFDLLGASLTP-TAAFWSMLGFFIAFTVKLPAVPFH 235 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 WLP+AH QA GS+ LAGI+LK G YG +RF+LPLFP A+ F P+ L +I I+Y Sbjct: 236 PWLPDAHTQASAGGSIILAGILLKTGAYGLLRFVLPLFPEAATDFTPIAMLLGVIGILYG 295 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 + ++ VQ D+K+LIAY+S++HMG+V +GIF+G ++GA+ Q+L+HG+ + ALF GV Sbjct: 296 AGLAFVQHDLKRLIAYTSVSHMGFVLLGIFAGTPLALQGAVIQILAHGMSTPALFMVAGV 355 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + +RLHTRD+ GL PR A + + F +A++GLPG F+GEFL+++ + S Sbjct: 356 LQERLHTRDMRQMSGLWSKAPRLAAIGLFFALASLGLPGLGNFVGEFLILLGTYPVSTPF 415 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +A+ G++L+A+Y+L + +KV G K + Q L D S+R + + ++ ++ G+YP Sbjct: 416 TAIAALGLILAAVYALLIVQKVFHG--KGQDTQPLPDFSIRHMTAMSAMILILLWLGLYP 473 Query: 470 VPIRDTFSVPLSSI 483 P+ D L S+ Sbjct: 474 QPVFDMAYPALESL 487 >gi|306411051|gb|ADM86131.1| NADH dehydrogenase subunit 4 [Urmenetea atacamensis] Length = 500 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 165/496 (33%), Positives = 275/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ +GI I + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPHKGNKVIRWY--TIGICLIELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASLTDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTANSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|81299420|ref|YP_399628.1| proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus elongatus PCC 7942] gi|17220766|gb|AAK40244.1| NADPH dehydrogenase subunit 4 [Synechococcus elongatus PCC 7942] gi|81168301|gb|ABB56641.1| proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus elongatus PCC 7942] Length = 496 Score = 272 bits (696), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 158/422 (37%), Positives = 244/422 (57%), Gaps = 11/422 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD +Q++E WI+ Y LGVDG+S+ LV L LT F I++ + ++ R Sbjct: 50 FDPQIHDWQLLEQLPWIEQLGLGYRLGVDGLSLPLVGLNALLT-FLIIAGLERQEQRSRL 108 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L+L V GAFL+ D+LLF++F+E LIP++++I +WGG+ R YAA KF +YT Sbjct: 109 YYGLMLLLSGAVSGAFLAQDLLLFFVFYEVELIPLYLLISIWGGARRGYAATKFLIYTAL 168 Query: 174 GSIFML---FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 +L A+ ++ + +L A+ P + Q + + +F IK P+ PFHT Sbjct: 169 SGALLLIGFLALTILSGAGSFAYNPNLAAV--LPIAQQVTLLVLILVAFGIKTPIVPFHT 226 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AHV+A T S+ LAG++LK+G YG +RF L LFP AP + L++++ +Y S Sbjct: 227 WLPDAHVEASTPVSMMLAGVLLKLGTYGILRFGLGLFPQVWPIVAPWLAGLAVVSTLYGS 286 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 L ++VQ D+KK++AYSSI HMGY+ + + + GA+ QM+SHGL+S+ LF VG + Sbjct: 287 LSAIVQQDMKKMVAYSSIGHMGYILLAAAAATPLSLLGAVCQMISHGLISALLFLEVGFV 346 Query: 351 YDRLHTRDIFAYGGLV---HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 Y R TRD+ GL+ +P +M++ MA+ GLPG GFI EF++ F Sbjct: 347 YSRTGTRDLRVLQGLLTPERGLPIVGSLMILAVMASGGLPGMVGFIAEFMIFRGSFSTFT 406 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 + G L+++Y L L + FG ++++ L +++LRE +A L V FG+ Sbjct: 407 VQTLFCMVGTGLTSVYFLLLVNRAFFG-RLPDQMETLPNVALREHIPALMLATLIVIFGV 465 Query: 468 YP 469 P Sbjct: 466 QP 467 >gi|301353202|ref|YP_003795200.1| Nad4p [Candida subhashii] gi|262410219|gb|ACY66212.1| Nad4p [Candida subhashii] Length = 453 Score = 272 bits (696), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 152/409 (37%), Positives = 239/409 (58%), Gaps = 9/409 (2%) Query: 68 YHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 Y W Y + DG+S +L++LT +L P ++S+W +I E R Y L+L ++++ Sbjct: 40 YDW--YELEVYYTTDGLSDVLIILTAYLVPLAMVSNWNTIGE--RTYYELVLLLGAVILL 95 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F+ DML FYI+FEASL+P+F++IG++G + R AA +YT S+FML A + + Sbjct: 96 NFMCQDMLAFYIYFEASLVPLFLMIGLYGAANREKAADYVLIYTLVSSLFMLVAFSL--Y 153 Query: 188 EKKTSSII-DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 E SS +M +Q ++++ +K P+ P HTWLP H ++P AGS+ Sbjct: 154 EVMMSSTTYQEASMMVLSIDLQCILFLSISLGIMVKTPLAPLHTWLPVVHSESPLAGSIL 213 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAG++LK+ Y +R +LP A+ + PV++ + LI I+Y SL+++ QTD+K ++AYS Sbjct: 214 LAGVILKLAVYAIVRLILPSLTEAATLYTPVVYVVCLITIVYTSLITLRQTDMKVIVAYS 273 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGL 365 SI+HM +G+ S +G+ G++ L+HGLVS ALF V GV+YDR H R ++ Y GL Sbjct: 274 SISHMAVCILGLLSNTVTGLTGSLVLSLAHGLVSPALFIIVGGVLYDRYHNRLVYYYQGL 333 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 + MP A ++V + AN+G P T FIGE L + + + LA V+LSA Y + Sbjct: 334 LGYMPVLATFLLVLSFANVGTPLTLNFIGELLSLSGAVARAPVLGALAIGSVLLSAAYQM 393 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 L ++ GV K + D + RER ++ + V TV+ G+ P + D Sbjct: 394 KLTNRLTGGV-KTPYIALTADCTRRERSILLLLTVPTVYLGVQPQALLD 441 >gi|134286192|dbj|BAF49821.1| NADH dehydrogenase ND4 [Aethionema cordifolium] Length = 506 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 277/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P ++LF Y G ++ + + I + F ++ F Q Sbjct: 11 PWLTIIVVFPISAGSLMLFLPYRGNKVNKWYTICICILELLITTYAFCYN-FKMDDPLIQ 69 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI++ Y LG+DG+SI ++LT F+T L+++ +++ R + L + Sbjct: 70 LSEDYKWINFLDFYWRLGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLMLAMY 128 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L + Sbjct: 129 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLIGV 188 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + + ++L A +P +++ ++I F +FA+K P+ P HTWLP+ H +A Sbjct: 189 LGISLYGSNEPTLNLELLANQSYPVTLEIILYIGFLIAFAVKSPLIPLHTWLPDTHGEAH 248 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++K Sbjct: 249 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPWLMVVGTIQIIYAASTSPGQRNLK 308 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 309 KRIAYSSVSHMGFIIIGIASITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVSLD 368 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-------VAVLA 413 GG+ ++P+ + + +MA++ LPG SGF+ EF+V + + + V+ Sbjct: 369 EMGGMAISIPKIFTMFTILSMASLALPGMSGFVAEFIVFFGIITSQKYLLMAKIFIIVVM 428 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G K VQ D RE + + + GIYP Sbjct: 429 AIGMILTPIYLLSMSRQMFYGY-KLINVQNFSFFDSGPRELFLSISSLLPIIGMGIYPDF 487 Query: 472 IRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 488 VLSLASNKVESILSNY 503 >gi|84371946|gb|ABC56264.1| NADH-plastoquinone oxidoreductase subunit 4 [Solanum bulbocastanum] gi|88656854|gb|ABD47107.1| NADH-plastoquinone oxidoreductase subunit 4 [Solanum tuberosum] Length = 500 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 160/477 (33%), Positives = 264/477 (55%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYH-FQSDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WID+F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V + + + + +P ++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVALYGSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 363 EMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLIPKLLITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 423 AIGIILTPIYSLSMPRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYP 479 >gi|159902706|ref|YP_001550050.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9211] gi|226737283|sp|A9BD08|NU4C_PROM4 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|159887882|gb|ABX08096.1| putative NADH dehydrogenase subunit (chain 4) [Prochlorococcus marinus str. MIT 9211] Length = 558 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 168/500 (33%), Positives = 276/500 (55%), Gaps = 19/500 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 + P+LS+ P G V+ F G G+ + ALGI+ + F+ ++ + +D + Sbjct: 24 DFPWLSLSILFPIFGSLVVPFIPDKGDGKTVRW-YALGIALVTFLITVGAYLKGYDPSQE 82 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E W+ D ++ +G DG+S+ L++LT+F+T +L++W +F+ + FL Sbjct: 83 GLQLAERVSWLPDLGLTWAVGADGLSMPLILLTSFITALAVLAAWPV---SFKPKLFFFL 139 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L + I F DMLLF++ +E L+P+++++ +WGG +R YAA KF +YT S+F Sbjct: 140 ILAMDGGQIAVFAVQDMLLFFLAWELELLPVYLLLAIWGGKKRQYAATKFIIYTAGSSLF 199 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L A + M + + + ++ F Q + +F +K+P+ P HTWLP+A Sbjct: 200 ILLAALAMGFFGGGTPNFEFTHLANQDFGTGFQLLCYGGLLIAFGVKLPVVPLHTWLPDA 259 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY +RF L P A FAP++ L ++ IIYA+L S Sbjct: 260 HGEATAPVHMLLAGILLKMGGYALLRFNAQLLPAAHAQFAPLLIVLGVVNIIYAALTSFA 319 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR Sbjct: 320 QRNLKRKIAYSSISHMGFVLIGIGSFSSLGTSGAMLQMVSHGLIGASLFFLVGATYDRTR 379 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG+ M + ++A++ LPG SGF+ E +V + Sbjct: 380 TLQLNEMGGVGQKMRIMFALWTTCSLASLALPGMSGFVSELMVFTGFVTDEVYTLPFRIV 439 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCE--KVQQLKDLSLRERCMVYPIAVLTVFFG 466 +A LA+ GV+L+ +Y L + R++ FG E ++L D RE ++ + V + G Sbjct: 440 IAGLAAIGVILTPIYLLSMLREIFFGKENVEFLSNRELVDAEPREIYVIGSLLVPIIGIG 499 Query: 467 IYPVPIRDTFSVPLSSIIEN 486 +YP + +T+ + ++E Sbjct: 500 LYPRIMTETYIASIDGLVER 519 >gi|306411047|gb|ADM86129.1| NADH dehydrogenase subunit 4 [Onoseris ilicifolia] Length = 500 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 166/496 (33%), Positives = 275/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F G Sbjct: 5 PWLTIIVVLPIXAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLGDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QIVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ ++I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGFNEPTLNFETSVNQSYPVALEIILYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTANSYVFDSGPRELFVSISIFLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|193806308|sp|A4QJG6|NU4C_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 277/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P ++LF Y G ++ + + I + F ++ F Q Sbjct: 5 PWLTIIVVFPISAGSLMLFLPYRGNKVNKWYTICICILELLITTYAFCYN-FKMDDPLIQ 63 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI++ Y LG+DG+SI ++LT F+T L+++ +++ R + L + Sbjct: 64 LSEDYKWINFLDFYWRLGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLIGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + + ++L A +P +++ ++I F +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGISLYGSNEPTLNLELLANQSYPVTLEIILYIGFLIAFAVKSPLIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPWLMVVGTIQIIYAASTSPGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGIASITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVSLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-------VAVLA 413 GG+ ++P+ + + +MA++ LPG SGF+ EF+V + + + V+ Sbjct: 363 EMGGMAISIPKIFTMFTILSMASLALPGMSGFVAEFIVFFGIITSQKYLLMAKIFIIVVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G K VQ D RE + + + GIYP Sbjct: 423 AIGMILTPIYLLSMSRQMFYGY-KLINVQNFSFFDSGPRELFLSISSLLPIIGMGIYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 482 VLSLASNKVESILSNY 497 >gi|154362207|ref|YP_001122996.2| NADH dehydrogenase ND4 [Aethionema cordifolium] Length = 501 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 277/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P ++LF Y G ++ + + I + F ++ F Q Sbjct: 6 PWLTIIVVFPISAGSLMLFLPYRGNKVNKWYTICICILELLITTYAFCYN-FKMDDPLIQ 64 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI++ Y LG+DG+SI ++LT F+T L+++ +++ R + L + Sbjct: 65 LSEDYKWINFLDFYWRLGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLMLAMY 123 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L + Sbjct: 124 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLIGV 183 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + + ++L A +P +++ ++I F +FA+K P+ P HTWLP+ H +A Sbjct: 184 LGISLYGSNEPTLNLELLANQSYPVTLEIILYIGFLIAFAVKSPLIPLHTWLPDTHGEAH 243 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++K Sbjct: 244 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPWLMVVGTIQIIYAASTSPGQRNLK 303 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 304 KRIAYSSVSHMGFIIIGIASITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVSLD 363 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-------VAVLA 413 GG+ ++P+ + + +MA++ LPG SGF+ EF+V + + + V+ Sbjct: 364 EMGGMAISIPKIFTMFTILSMASLALPGMSGFVAEFIVFFGIITSQKYLLMAKIFIIVVM 423 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G K VQ D RE + + + GIYP Sbjct: 424 AIGMILTPIYLLSMSRQMFYGY-KLINVQNFSFFDSGPRELFLSISSLLPIIGMGIYPDF 482 Query: 472 IRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 483 VLSLASNKVESILSNY 498 >gi|297570908|ref|YP_003696682.1| proton-translocating NADH-quinone oxidoreductase, chain M [Arcanobacterium haemolyticum DSM 20595] gi|296931255|gb|ADH92063.1| proton-translocating NADH-quinone oxidoreductase, chain M [Arcanobacterium haemolyticum DSM 20595] Length = 510 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 164/494 (33%), Positives = 283/494 (57%), Gaps = 18/494 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFI-FSLFVWSVFDKGRS-S 61 P+L+I+ +PF ++ + L R F AL +S + F+ F + + FD ++ + Sbjct: 9 PWLTILVAIPFFAGLLLWLVAPLRAFARHF---ALAVSVLVFVGFVAAMVTSFDVAQAGA 65 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI-QENFREYMIAFL 119 Q+ E Y WI S+ G++G+ +++ L T L PF I++ W + Y L Sbjct: 66 TQLHESYPWIPQIGASFTWGINGMGAVMIGLATVLVPFVIVAEWDDFGSADDAGYFAWVL 125 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VLE+++IG F + D+ LFY+ FEA ++P++ +IG +GG R AA KF L++ G + ML Sbjct: 126 VLEAIMIGLFAARDVFLFYVLFEAMIVPVYFMIGRYGGVGRARAAMKFLLFSLAGGLIML 185 Query: 180 FAIVVM---CWEKKTSSIID-LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 ++ + + + ++D L + + W++++FF +FAIK PM+P HTWLP+ Sbjct: 186 AGVIAIYAYGQGGEGAFLLDSLRGALHLSDTAELWIFLSFFIAFAIKAPMWPVHTWLPDT 245 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 V A T S L GI+ K+G +G I LPLFP + AP++ L++I+I++ +++++ Sbjct: 246 AVSASTGTSTLLVGILDKLGTFGMIAICLPLFPRTATAIAPIVLVLAVISILWGAIMAIS 305 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 ++ +L+AY+S++H G++ +G+FSG K + GA+ M++HG+ ++ALF VG + R Sbjct: 306 SDNLLRLVAYTSVSHFGFIVMGVFSGSKLAMSGAILYMVAHGIGTAALFLIVGFLERRGK 365 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 + I +YGG P A +V +A + LPG SGFI E+LV+M F VA++A+ Sbjct: 366 SYLISSYGGWQRVTPLIAGTFLVAGLATIALPGLSGFIPEYLVLMGTFTLWPAVAMVAAI 425 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 GVVL+++Y L Y++ G +V KDL +RE+ +V + + G YP P+ D Sbjct: 426 GVVLASIYILLPYQRTFTGPKPDVEV---KDLGMREKTVVAGLIAFMLALGFYPAPVLDI 482 Query: 476 FSVPLSSIIENYTL 489 ++ + +N T+ Sbjct: 483 ----VTPVADNATI 492 >gi|154362191|ref|YP_635689.2| NADH dehydrogenase subunit 4 [Solanum tuberosum] gi|154362202|ref|YP_538900.2| NADH dehydrogenase subunit 4 [Solanum bulbocastanum] Length = 500 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 160/477 (33%), Positives = 264/477 (55%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYH-FQSDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WID+F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V + + + + +P ++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVALYGSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 363 EMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLIPKLLITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 423 AIGIILTPIYSLSMPRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYP 479 >gi|114107183|ref|YP_740167.1| NADH-plastoquinone oxidoreductase subunit 4 [Daucus carota] gi|122221300|sp|Q0G9R2|NU4C_DAUCA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|113200958|gb|ABI32474.1| NADH-plastoquinone oxidoreductase subunit 4 [Daucus carota] Length = 500 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 160/477 (33%), Positives = 269/477 (56%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +ILF + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVILPIFAGSIILFLPHRGNRVIRWYTICICILELLLTTYAFCYH-FQLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E + WID+F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LVEDFKWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGLFASRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + T ++ + +P +++ ++I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVGLYGSTEPTLNFATLVNQSYPVALEIILYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L A F+P + + I IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLSHAHSIFSPWLVIVGTIQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFILIGIGSINDTGLNGAILQIVSHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ EF+V + + + + Sbjct: 363 EMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAEFIVFFGIITSQKYLLISKLGITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 423 AIGIILTPIYSLSMLRQMFYGYKLFNAPNSYVFDSGPRELFVSIAIFIPVIGIGMYP 479 >gi|170665224|gb|ACB29152.1| NADH dehydrogenase subunit D [Doniophyton anomalum] Length = 500 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 167/498 (33%), Positives = 273/498 (54%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 N P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 3 NFPWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYTFCYHFQLDDP 60 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W I + R + L Sbjct: 61 LIQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWP-ITRDSRLFHFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 120 AMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLL 179 Query: 180 FAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H Sbjct: 180 MGVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q Sbjct: 240 EAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++KK IAYSSI+HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 300 NLKKRIAYSSISHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLV 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 360 YLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAIT 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 420 FVMAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 480 DFVLSLSVDKVEGILSNY 497 >gi|295400703|ref|ZP_06810680.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacillus thermoglucosidasius C56-YS93] gi|312112603|ref|YP_003990919.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacillus sp. Y4.1MC1] gi|294977284|gb|EFG52885.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacillus thermoglucosidasius C56-YS93] gi|311217704|gb|ADP76308.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacillus sp. Y4.1MC1] Length = 508 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 156/464 (33%), Positives = 261/464 (56%), Gaps = 28/464 (6%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-----------FCSYHLGVDGISILLVVLT 92 + I SLF + + +G + E W+ + Y L +DGIS++++VLT Sbjct: 43 SLILSLFAFCQYLRGYRLEHLAEKRGWVRFADFPFLTESTFVVRYELNIDGISLVMIVLT 102 Query: 93 TFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 + L + I++ ++ Y + FL+LE ++G F + +M+LF+IF E +L+ MF +I Sbjct: 103 SLLA-ALAAIASIHIKKEWKGYFMLFLLLEIGMLGVFAAGNMVLFFIFLEMTLVAMFFLI 161 Query: 153 GVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF------- 205 G WGG ER AAY + LY GS +L I ++ TS++ L M P Sbjct: 162 GKWGGFERERAAYSYLLYNGVGSAVLLMVIAILFARAGTSNMELLKEMLHNPAVRAQLIA 221 Query: 206 ----SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIR 261 +++ +++A +F IK+P+ PFH W+ HVQAP A + +G++LK+G YG IR Sbjct: 222 PISDDLRFSLFLALLVAFGIKLPIVPFHRWILRVHVQAPPAIVMLHSGVLLKIGAYGLIR 281 Query: 262 FLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSG 321 F + LFP + FA +I L ++ ++Y + ++ +Q D K ++AYSS++HMG V IG+ + Sbjct: 282 FAIGLFPDQFRDFAFIIAILGVVNLLYGAFLAFIQNDFKMVLAYSSVSHMGIVLIGLGAL 341 Query: 322 MKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTM 381 ++G++GA+FQ +SHGL+S+ LF V ++++R +T ++ GGL MP A ++ + Sbjct: 342 NEAGMQGAIFQAVSHGLISALLFLLVSILFERTNTTEMDRLGGLAKAMPLTAGSLLAGAL 401 Query: 382 ANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV 441 A++GLPG SGF+ EF +FQ + VA + G++++A+Y L + FG SK Sbjct: 402 ASLGLPGMSGFVSEFTAFFGLFQTAPAVAAAGTLGIIMTAVYLLRAVLNITFGTSKSGGA 461 Query: 442 QQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 Q D+SL E V+ + L + G+YP + PL + I+ Sbjct: 462 QAF-DMSLTEAVPVFVLLALIIMIGVYP----RILAEPLQAAIK 500 >gi|300087941|ref|YP_003758463.1| proton-translocating NADH-quinone oxidoreductase subunit M [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527674|gb|ADJ26142.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 498 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 189/499 (37%), Positives = 281/499 (56%), Gaps = 24/499 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M++P+L++ +P LG +I L ++ ++L + + S+ V++ FD+ S Sbjct: 1 MDMPYLTLTIAIPILGALLIALWPRLSS--KNIRNISLLATALPLALSIIVFAGFDRSAS 58 Query: 61 ---SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 Q E WI ++ LGVDG+S+ ++LTT L IL SWK I REY Sbjct: 59 MNGVIQFSEKVSWIPLINANFALGVDGLSLPFLLLTTLLGFLVILISWK-IDLRVREYFA 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L++ + G FL+ D LLF+ F+E LIPM+ +I +WG R Y+A K+ LYT G Sbjct: 118 WLLLLQASITGVFLAQDFLLFFFFWELELIPMYFLIAIWGAGRREYSALKYVLYTLLGGA 177 Query: 177 FMLFAIVVMCWEKKTSSI-----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 F+L I+V+ + + + +DL + + ++ FF FAIK+P+FPFHTW Sbjct: 178 FILAGILVLFFGTGSLDMAYLASVDLTGL--LAPGMLTLAFLFFFLGFAIKLPVFPFHTW 235 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH APTA SV LAG +LKMGGYG IR +FP + FAP I L++I I+Y Sbjct: 236 LPDAHTDAPTAVSVILAGTLLKMGGYGMIRVNAAMFPDEALQFAPFILVLAVINIVYGGA 295 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V++ QTDIK+LIAYSSI+HMG+V +GIF+ + GA QM+SHG+++ LF GV+ Sbjct: 296 VTLKQTDIKRLIAYSSISHMGFVLLGIFALGHLSMIGASLQMVSHGIITGLLFAITGVVM 355 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS----- 406 H R I GGL H MPR V+ ++ + M +P TSGFI E + F + Sbjct: 356 HNTHERSIPKMGGLTHQMPRSTVIFVLGGLGAMAVPATSGFIAEIWTFIGAFSSGVVPHI 415 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER--CMVYPIAVLTVF 464 V++ G++L+A Y LW ++V FG EK Q++D E +V+ IA+ + Sbjct: 416 EVYTVISLLGILLAAAYILWTIQRVFFG-QPLEKFGQVRDADRVEVGFSVVFVIAMFVI- 473 Query: 465 FGIYPVPIRDTFSVPLSSI 483 G+YP + D F ++ I Sbjct: 474 -GLYPRILTDVFEGGIAPI 491 >gi|170665324|gb|ACB29202.1| NADH dehydrogenase subunit D [Sonchus oleraceus] Length = 500 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 165/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP ILF + G R + I + I + + + F Sbjct: 5 PWLTIIVVLPIFAGSFILFLPH--KGNRVIRWYTICICMLELILTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLIIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DQMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSIAIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|123965413|ref|YP_001010494.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9515] gi|193806231|sp|A2BUC6|NU4C_PROM5 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|123199779|gb|ABM71387.1| putative NADH dehydrogenase subunit (chain 4) [Prochlorococcus marinus str. MIT 9515] Length = 546 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 172/504 (34%), Positives = 279/504 (55%), Gaps = 27/504 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 + P+LSI P F+I F G G+ + AL ++ I F+ ++ + + FD Sbjct: 23 DFPWLSISILFPIASAFLIPFFPDKGEGKEVRW-FALSVALITFLVTVGAYINGFDINNE 81 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q+ E W+ ++ +G DGIS+ L++LT+F+T +L++W F+ + FL Sbjct: 82 NVQLKESISWLPKLGLTWSVGADGISMPLILLTSFITALAVLAAWPV---KFKPKLFFFL 138 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L + I F DMLLF++ +E L+P+++++ +WGG R YAA KF +YT SIF Sbjct: 139 ILIMDGGQIAVFAVQDMLLFFLTWELELLPVYLLLAIWGGKNRQYAATKFIIYTAGSSIF 198 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM--WIAFFCSFAIKIPMFPFHTWLPNA 235 +L A + M + + ++ FS + + +I +F +K+P+ P HTWLP+A Sbjct: 199 ILLAALAMGFYGTEVPNFEFAHLANQNFSQNFQILCYIGLLIAFGVKLPIVPLHTWLPDA 258 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY +RF L P+A FAP++ L ++ IIYA+L S Sbjct: 259 HGEATAPVHMLLAGILLKMGGYALLRFNAQLLPVAHAQFAPLLIVLGVVNIIYAALTSFA 318 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR Sbjct: 319 QRNLKRKIAYSSISHMGFVLIGIGSFSSLGTSGAMLQMVSHGLIGASLFFLVGATYDRTK 378 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NT 408 T + GG+ M + ++A++ LPG SGF+ E +V + Sbjct: 379 TLKLDEMGGVGQKMRIMFALWTACSLASLALPGMSGFVSELMVFTGFVTDEVYTLPFRVV 438 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVS--KCEKVQQLKDLSLRE----RCMVYPIAVLT 462 +A LA+ GV+L+ +Y L + R++ FG K + + L D RE C++ PI Sbjct: 439 MASLAAVGVILTPIYLLSMLREIFFGKENPKLTEDRNLIDAEPREVYIIACLLLPI---- 494 Query: 463 VFFGIYPVPIRDTFSVPLSSIIEN 486 + G+YP + +++ +S++++ Sbjct: 495 IGIGLYPRLVTESYLATISNLVDR 518 >gi|148241330|ref|YP_001226487.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. RCC307] gi|193806235|sp|A5GQH5|NU4C_SYNR3 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|147849640|emb|CAK27134.1| NAD(P)H-quinone oxidoreductase chain 4 [Synechococcus sp. RCC307] Length = 544 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 168/503 (33%), Positives = 264/503 (52%), Gaps = 30/503 (5%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV---ALGISTINFIFSLFVW-SVFDKGR 59 P+L+ LP I G G+ GV ALG+S F+ ++ + + +D Sbjct: 30 PWLTTAILLPIAASLAIPLVPDPGNGK----GVRWYALGVSLTTFLITVGAYLNGYDPDI 85 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + Q+ + W+ D + +G DG+S+ L++LT+F+T L++W + R + Sbjct: 86 AGLQLRQVIPWVPDLGLGWSVGADGLSMPLILLTSFITTLACLAAWP-VTFKPRLFFFLL 144 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L ++ I F DMLLF++ +E LIP+++++ +WGG +R YAA KF LYT S+F+ Sbjct: 145 LAMDGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAVSSLFI 204 Query: 179 LFAIVVMCWEKKTS---SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L + M + DL A Q + +F +K+P+ P HTWLP+A Sbjct: 205 LLVALAMAFSGGGPVSFEYSDL-AAKHLGAGFQALCYAGLLIAFGVKLPIVPLHTWLPDA 263 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY RF +FP A FAP++ L ++ IIYA+L S Sbjct: 264 HGEATAPVHMLLAGILLKMGGYALFRFNASMFPDAHVQFAPLLVVLGVVNIIYAALTSFA 323 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S GAM QM+SHGL+ ++LFF VG YDR H Sbjct: 324 QRNLKRKIAYSSISHMGFVLIGIGSFSPLAASGAMLQMISHGLIGASLFFLVGATYDRTH 383 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG+ M + + ++A++ LPG SGF+ E +V + + Sbjct: 384 TLQLDEMGGVGQRMRKMFAMWTACSLASLALPGMSGFVSELMVFVGFATDDAYTLPFRIV 443 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRE----RCMVYPIAVLTV 463 + A+ GV+L+ +Y L + R++ FG K E L D RE C++ PI + Sbjct: 444 IDGAAAIGVILTPIYLLSMLREIFFGQEKPELSDANLVDAEPREIYIISCLLVPI----I 499 Query: 464 FFGIYPVPIRDTFSVPLSSIIEN 486 G+YP + D++ + ++ Sbjct: 500 GIGLYPKLVTDSYRATIEQVVAR 522 >gi|288817729|ref|YP_003432076.1| NADH dehydrogenase chain M [Hydrogenobacter thermophilus TK-6] gi|288787128|dbj|BAI68875.1| NADH dehydrogenase chain M [Hydrogenobacter thermophilus TK-6] gi|308751328|gb|ADO44811.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hydrogenobacter thermophilus TK-6] Length = 503 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 274/456 (60%), Gaps = 22/456 (4%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS-SF 62 P L + +P G +IL R G++L + I+F+ +L FD ++ + Sbjct: 9 PLLPLSMMVPVFGSLLILL-----LPERFSKGISLFSAGISFLIALSSLLFFDFSKAQAV 63 Query: 63 QMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FREYMIAFL 119 Q +YY I + LG+DG+S+L+ +LTT ++ IL S + Q N REY + FL Sbjct: 64 QFYQYYPLIPELKVGLALGLDGLSMLMYLLTTLVSFVAILWSVRDRQINHRLREYYLWFL 123 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + E+ +IG F S D+++FY+F+E +L+PM +IG+WG R+Y+AYKFF+Y F S+F+L Sbjct: 124 LSEAFLIGVFSSWDLMVFYVFYELTLVPMLFVIGIWGYKLRLYSAYKFFIYIFVSSLFLL 183 Query: 180 FAIVVMCWE------KKTSSIIDLYAMSKFPFSIQY--WMWIAFFCSFAIKIPMFPFHTW 231 IV + E K + S DL +S++Y ++++ FF +FA+K P+ PFHTW Sbjct: 184 LGIVSLAVEHYKLFGKFSFSYFDLLNNH---YSLEYGLFLFLLFFIAFAVKTPIVPFHTW 240 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +APTAGSV LA I+LKMG Y +RF + LFP + + PV+ + +I AS Sbjct: 241 LPDAHGEAPTAGSVVLAAILLKMGTYALLRFNIGLFPEVAVFLMPVLVLWGIFSIAVASW 300 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ Q+++K+ +AYSS++HMG+V G+F G+ ++ +M +HGL S++LF G IY Sbjct: 301 YTISQSNVKRFVAYSSVSHMGFVVTGMFLLNMEGLRASIMEMFAHGLTSASLFMIAGFIY 360 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +RLH+ ++ + G MP +A++ ++ ++MGLPG S F G+FL I+S + + +A Sbjct: 361 NRLHSFNMDSLKGSAKYMPLFAIITVLTAFSSMGLPGGSSFWGKFLTILSAREYTTLLAF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKD 446 L G SA+Y L+L KV+F SK E K+ D Sbjct: 421 LVLVGAFFSAVYILYL-MKVLFLDSKEESKLVHFTD 455 >gi|145259993|ref|YP_398378.2| NADH dehydrogenase subunit 4 [Lactuca sativa] gi|122237662|sp|Q1KXG6|NU4C_LACSA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|88657038|gb|ABD47288.1| NADH-plastoquinone oxidoreductase subunit 4 [Lactuca sativa] Length = 500 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 165/496 (33%), Positives = 274/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP ILF + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFILFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLSGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DQMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNAYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|193806309|sp|A4QJQ0|NU4C_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 277/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P ++LF Y G ++ + + I + F ++ F Q Sbjct: 5 PWLTIIVVFPISAGSLMLFLPYRGNKVHKWYTICICILELLLTTYTFCYN-FKMNDPLIQ 63 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI++ Y LG+DG+SI ++LT F+T IL+++ +++ R + L + Sbjct: 64 LSEDYKWINFLDFYWRLGIDGLSIGTILLTGFITTLAILAAFPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L + Sbjct: 123 SGQIGSFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLIGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + + ++L A +P +++ ++I F +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGISLYGSNEPTLNLELLANQSYPVTLEIILYIGFLIAFAVKSPLIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGIASITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVSLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ ++P+ + + +MA++ LPG SGF+ EF+V + + + + Sbjct: 363 EMGGMAISIPKIFTMFTILSMASLALPGMSGFVAEFIVFFGIITSQKYLLMAKILIIFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G K VQ D RE + + + GIYP Sbjct: 423 AIGMILTPIYLLSMSRQMFYGY-KLINVQNFSFFDSGPREFFLSISSLLPIIGMGIYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 482 VLALASNKVESILSNY 497 >gi|134286277|dbj|BAF49905.1| NADH dehydrogenase ND4 [Aethionema grandiflorum] Length = 506 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 277/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P ++LF Y G ++ + + I + F ++ F Q Sbjct: 11 PWLTIIVVFPISAGSLMLFLPYRGNKVHKWYTICICILELLLTTYTFCYN-FKMNDPLIQ 69 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI++ Y LG+DG+SI ++LT F+T IL+++ +++ R + L + Sbjct: 70 LSEDYKWINFLDFYWRLGIDGLSIGTILLTGFITTLAILAAFPVTRDS-RLFHFLMLAMY 128 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L + Sbjct: 129 SGQIGSFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLIGV 188 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + + ++L A +P +++ ++I F +FA+K P+ P HTWLP+ H +A Sbjct: 189 LGISLYGSNEPTLNLELLANQSYPVTLEIILYIGFLIAFAVKSPLIPLHTWLPDTHGEAH 248 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++K Sbjct: 249 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRNLK 308 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 309 KRIAYSSVSHMGFIIIGIASITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVSLD 368 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ ++P+ + + +MA++ LPG SGF+ EF+V + + + + Sbjct: 369 EMGGMAISIPKIFTMFTILSMASLALPGMSGFVAEFIVFFGIITSQKYLLMAKILIIFVM 428 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G K VQ D RE + + + GIYP Sbjct: 429 AIGMILTPIYLLSMSRQMFYGY-KLINVQNFSFFDSGPREFFLSISSLLPIIGMGIYPDF 487 Query: 472 IRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 488 VLALASNKVESILSNY 503 >gi|302559095|ref|ZP_07311437.1| NADH-quinone oxidoreductase, M subunit [Streptomyces griseoflavus Tu4000] gi|302476713|gb|EFL39806.1| NADH-quinone oxidoreductase, M subunit [Streptomyces griseoflavus Tu4000] Length = 523 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 178/516 (34%), Positives = 283/516 (54%), Gaps = 29/516 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+ LP +G R + +AL S + ++ V FD + Sbjct: 1 MSFPLLTATAVLPAVGAIATAAVPA--AKRTAAKWLALSFSLATLVLAVVVLVRFDPDGA 58 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKS---IQENFREYMI 116 +Q+ E + WI D+ Y LGVDGI + L+ LT L PF +L+ W ++ R + Sbjct: 59 RYQLTESHAWIADFGVRYELGVDGIGVALIALTALLIPFIVLAGWHDADPLETGSRRWRP 118 Query: 117 A------FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GSE 159 L +E+MVI +F + D+ LFYIFFEA LIPM+ +IG +G ++ Sbjct: 119 TQGFFALILAVEAMVILSFEATDVFLFYIFFEAMLIPMYFLIGGFGDRAHAHGEATAATQ 178 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIA 214 R YAA KF LY G + ML A++ V+ S I + A + + W+++ Sbjct: 179 RSYAAVKFLLYNLAGGLIMLAAVIGLYVVAGTFSLSEIAEARAGGSLEMATNTERWLFLG 238 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 FF +FA+K P++P HTWLPNA ++ +V + ++ K+G + +RF L LFP AS++ Sbjct: 239 FFFAFAVKAPLWPLHTWLPNAMQESTAPVAVLITAVVDKVGTFAMLRFCLQLFPEASKWA 298 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P + L++I+IIY +L+++ Q DIK+LIAY+SI+H G++ +GIF+ G GA M+ Sbjct: 299 TPAVLVLAVISIIYGALLAVGQRDIKRLIAYASISHFGFIIMGIFAMTSQGQSGATLYMV 358 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HGL ++ L G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 359 NHGLSTAVLMLIAGFLISRRGSRLIADYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFVS 418 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EFLV++ F + ++A+FG+VL+ALY+L LY++ + G K E V + DL +RE + Sbjct: 419 EFLVLVGTFTRYPVIGIIATFGIVLAALYTLVLYQRTMTGPVKPE-VSAMPDLRVREIAV 477 Query: 455 VYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 V P+ VL VF G+YP P+ D + + + + K Sbjct: 478 VAPLVVLLVFLGVYPKPLTDVVNPAVKHTMSDVQQK 513 >gi|154362197|ref|YP_001123080.2| NADH dehydrogenase ND4 [Aethionema grandiflorum] Length = 501 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 277/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P ++LF Y G ++ + + I + F ++ F Q Sbjct: 6 PWLTIIVVFPISAGSLMLFLPYRGNKVHKWYTICICILELLLTTYTFCYN-FKMNDPLIQ 64 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI++ Y LG+DG+SI ++LT F+T IL+++ +++ R + L + Sbjct: 65 LSEDYKWINFLDFYWRLGIDGLSIGTILLTGFITTLAILAAFPVTRDS-RLFHFLMLAMY 123 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L + Sbjct: 124 SGQIGSFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLIGV 183 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + + ++L A +P +++ ++I F +FA+K P+ P HTWLP+ H +A Sbjct: 184 LGISLYGSNEPTLNLELLANQSYPVTLEIILYIGFLIAFAVKSPLIPLHTWLPDTHGEAH 243 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++K Sbjct: 244 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRNLK 303 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 304 KRIAYSSVSHMGFIIIGIASITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVSLD 363 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ ++P+ + + +MA++ LPG SGF+ EF+V + + + + Sbjct: 364 EMGGMAISIPKIFTMFTILSMASLALPGMSGFVAEFIVFFGIITSQKYLLMAKILIIFVM 423 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G K VQ D RE + + + GIYP Sbjct: 424 AIGMILTPIYLLSMSRQMFYGY-KLINVQNFSFFDSGPREFFLSISSLLPIIGMGIYPDF 482 Query: 472 IRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 483 VLALASNKVESILSNY 498 >gi|89280686|ref|YP_514903.1| NADH dehydrogenase subunit 4 [Solanum lycopersicum] gi|84372034|gb|ABC56351.1| NADH-plastoquinone oxidoreductase subunit 4 [Solanum lycopersicum] Length = 500 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 160/477 (33%), Positives = 263/477 (55%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYH-FQSDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WID+F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGLFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V + + + + +P ++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVALYGSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 363 EMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLMPKLLITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 423 AIGIILTPIYSLSMPRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYP 479 >gi|332883532|gb|EGK03815.1| hypothetical protein HMPREF9456_01882 [Dysgonomonas mossii DSM 22836] Length = 477 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 155/414 (37%), Positives = 253/414 (61%), Gaps = 11/414 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM--VIGAFLSLD 133 S+ L DG+S+ ++++TT L P IL + +E E M+ LV+ + ++GAFLS + Sbjct: 65 SFSLKADGLSMAMILMTTILLPIIILGTQS--REFKNEKMLYSLVMFMVFAMVGAFLSSN 122 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGSE---RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 LL+Y+F+E SLIP++ II +WG E R AA FFL+TF GS+FML AI+ M + K Sbjct: 123 ALLYYVFWEMSLIPIYFIIVLWGNGEIVKRRKAAMTFFLFTFAGSLFMLAAIIYM-YTKT 181 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 S ++ + + + Q W+++AFF ++AIKIP+FPFHTW N + +AP G++ LAGI Sbjct: 182 GSFQLEAFYNASLSQTEQIWIFLAFFLAYAIKIPIFPFHTWQANVYQKAPAIGTMLLAGI 241 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 M KMG Y IR+ LP+ P AS F VI L +I ++Y +++++ Q D+K+ +AY+S++H Sbjct: 242 MSKMGAYSVIRWQLPITPYASNEFRTVIVILCIIGVVYGAIMALRQDDLKRFLAYASLSH 301 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 +G++ G ++ G+EGA+ +L+HG +F+ VI R+HT I GG+ + P Sbjct: 302 VGFIAAGSYALTYDGLEGAVILILAHGFGIVGMFYSADVIQTRMHTLTISKMGGIKEHAP 361 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 ++AV + ++++G+P T FIGEF ++ ++Q + A+ + L AL+ L +Y++ Sbjct: 362 KFAVAFFISILSSIGIPLTFNFIGEFTIMFGLYQVNLWYALTIGTALFLGALFMLRMYQQ 421 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 V+ G V +DLS E + I + +FFG+Y P+ D S L+ I+ Sbjct: 422 VMLG---EPSVNPFRDLSKTETVVFALIIGVLIFFGVYVKPVTDLVSTSLTEIV 472 >gi|122225995|sp|Q2A7B8|NU4C_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|113531110|emb|CAJ32445.2| NADH dehydrogenase subunit 4 [Solanum lycopersicum] Length = 500 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 160/477 (33%), Positives = 263/477 (55%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYH-FQSDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WID+F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGLFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V + + + + +P ++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVALYGSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 363 EMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLMPKLLITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 423 AIGIILTPIYSLSMPRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYP 479 >gi|161350045|ref|NP_894260.2| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9313] Length = 523 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 165/495 (33%), Positives = 271/495 (54%), Gaps = 15/495 (3%) Query: 4 PFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWS-VFDKGRSS 61 P+LS++ LP +G ++ L ++ AL ++F+ L V+S +FD Sbjct: 16 PWLSLIVLLPAMGALLMPLLPKNETSNSQAPRNFALVFLLVDFVLMLVVFSRMFDGQDGG 75 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E WI + + LG DG+S LVVL+ +T + +SWK +Q R Y LV Sbjct: 76 LQLVERVSWIPFIGLEWSLGADGLSAPLVVLSGLITLLAVAASWK-VQSKTRLYFALLLV 134 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 S FLS D LLF++ +E L+P++++I +WGGS R+YAA KF LYT S+ +L Sbjct: 135 QASAQGLVFLSQDFLLFFLAWELELVPVYLLIAIWGGSRRLYAATKFILYTALASLLILI 194 Query: 181 AIVVMCWEKK--TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + T ++ +L S S+ ++ F F +K+PMFP HTWLP+AH + Sbjct: 195 SGLALALSGGEFTLNLTELANRSP-EGSLGLLCYLGFLVGFGVKLPMFPLHTWLPDAHGE 253 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A S+ LAG++LKMGGY +RF + + P A AP + + ++ IIY + + Q + Sbjct: 254 ANAPVSMLLAGVLLKMGGYALLRFNVQMLPDAHLQLAPALIVIGIVNIIYGAFNAFAQDN 313 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+R T Sbjct: 314 VKRRIACSSVSHMGFVLLGIGAIDALGISGAMLQMISHGLIAAAMFFVTGTFYERTQTLS 373 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA-------V 411 I GGL +P + ++A++ LPG SGF+ E V + + + V Sbjct: 374 IPNMGGLAKVLPITFAFFLASSLASLALPGMSGFVSEITVFLGIISQEGFTSIFRVITIV 433 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 LA+ G+VL+ +Y L + R+V FG + + ++D++ RE + + V T+ G +P Sbjct: 434 LAAIGLVLTPVYLLSMCRRVFFG-PRIPALAMIEDINPRELTIGLSLIVPTLVIGFWPRV 492 Query: 472 IRDTFSVPLSSIIEN 486 D + +++ + Sbjct: 493 AIDLYEASTNALADR 507 >gi|170665348|gb|ACB29214.1| NADH dehydrogenase subunit D [Youngia japonica] Length = 500 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 167/497 (33%), Positives = 275/497 (55%), Gaps = 17/497 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F++ F G R + I + I + + + F Sbjct: 5 PWLTIIVVLPIFAGSFLLFFPH---KGNRVIRWYTICICMLELILTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDQMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 421 VMAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 481 FVLSLSVDKVEGILSNY 497 >gi|170665268|gb|ACB29174.1| NADH dehydrogenase subunit D [Jungia polita] Length = 500 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 274/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R+ + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRAIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ ++I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSVNQSYPVALEIIIYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKLFTMFSSFSMASLALPGMSGFVAEVIVFLGIINSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|112253805|gb|ABI14526.1| NADH-plastoquinone oxidoreductase subunit 4 [Piper cenocladum] Length = 498 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 165/499 (33%), Positives = 274/499 (54%), Gaps = 17/499 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 N P+L+I+ P I F + G ++ ++ I + + + +V+ F Sbjct: 3 NFPWLTIIVVFPIFAGLFIFFLPHRGNKVVRWYTIS--ICLLELLLTTYVFCYHFKLDDP 60 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E Y WI F + LGVDG+SI ++LT F+T L++W + + R + L Sbjct: 61 LIQLEENYKWITIFDFHWKLGVDGLSIGPILLTGFITTLATLAAWPVTRYS-RLFHFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 120 AMYSGQIGSFSSRDLLLFFLMWELELIPVYLLLSMWGGEKRLYSATKFILYTAGGSIFLL 179 Query: 180 FAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ++ M ++L ++ +P +++ +I F ++A+K P+ P HTWLP+ H Sbjct: 180 IGVLGMGLYGSNEPTLNLETLANQSYPLALEIIFYIGFLIAYAVKSPIIPLHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q Sbjct: 240 EAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLILVGAIQIIYAASTSLGQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 300 NLKRRIAYSSISHMGFTIIGIGSITDTGLNGALLQIISHGFIGAALFFLAGTSYDRIRLV 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ MP+ + F+MA++ LPG SGFI E ++ + + + Sbjct: 360 YLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFIAELVIFFGIIISPQYLLIPKIVIT 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVS--KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 + + G++L+ +YSL + R++ +G C+K D RE + I + + GIY Sbjct: 420 FVVAIGMILTPIYSLSMLRQMFYGYKLFNCKK-SHFFDSGPRELFISICILLPVIGIGIY 478 Query: 469 PVPIRDTFSVPLSSIIENY 487 P + + +I+ NY Sbjct: 479 PDFVLSLSVDKVETILSNY 497 >gi|170665212|gb|ACB29146.1| NADH dehydrogenase subunit D [Dasyphyllum reticulatum] Length = 500 Score = 271 bits (692), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 165/497 (33%), Positives = 274/497 (55%), Gaps = 13/497 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P+L+I+ LP +I F + G ++ + + I + F + F Sbjct: 3 NFPWLTIIVVLPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYH-FQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTFNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 421 VMAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 481 FVLSLSVDKVEGILSNY 497 >gi|227481169|emb|CAP62548.1| ndhD [Ceratophyllum demersum] Length = 500 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 168/496 (33%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P I F Y G ++ + + + + I F + F Q Sbjct: 5 PWLTIIVLFPISAGSFIFFLPYKGNKVIRWYTIGICLLELLLITYTFCY-FFQLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI++F + LG+DG+SI ++LT F+T L++W Q++ R + L + Sbjct: 64 LEEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTQDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + M I++ A +P +++ + F ++A+K+P+ P HTWLP+ H +A Sbjct: 183 LGMGLYGSNEPILNFETSANQSYPMALEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTVQIIYAASTSFGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGICSITDTGLNGAVLQIISHGFIGAALFFLAGTSYDRIRIVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV---AVLASF-- 415 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + VL +F Sbjct: 363 EMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSPKYLLMPKVLITFVM 422 Query: 416 --GVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 G++L+ +YSL + R++ +G K V D RE + I + + GIYP Sbjct: 423 AIGIILTPIYSLSMLRQMFYGY-KLFNVPNSYFVDSGPRELFISICILLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLLGDKVEDILSNY 497 >gi|119510175|ref|ZP_01629313.1| NAD(P)H-quinone oxidoreductase subunit 4 [Nodularia spumigena CCY9414] gi|119465125|gb|EAW46024.1| NAD(P)H-quinone oxidoreductase subunit 4 [Nodularia spumigena CCY9414] Length = 443 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 159/427 (37%), Positives = 245/427 (57%), Gaps = 28/427 (6%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE--SMVIGAFLSLDMLLF 137 G DG+S+ L++LT F++ IL++W F+ + FL+L I F DMLLF Sbjct: 1 GADGLSMPLIILTGFISTLAILAAWPV---TFKPKLFYFLILAMYGGQIAVFAVQDMLLF 57 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-ID 196 ++ +E L+P++ ++ +WGG +R YAA KF LYT GS+F+L + + M + T + + Sbjct: 58 FLVWELELVPIYFLLSIWGGKKRQYAATKFILYTAGGSLFILLSALTMGFYGDTVTFDMR 117 Query: 197 LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 A+ F + Q ++ F ++A+K+P+ P HTWLP+AH +A + LAGI+LKMGG Sbjct: 118 ALALKDFALNFQLALYAGFLIAYAVKLPIIPLHTWLPDAHGEATAPVHMLLAGILLKMGG 177 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 Y IR + P A YFAPV+ L ++ IIYA+L S Q ++K+ IAYSSI+HMG+V I Sbjct: 178 YALIRMNAQMLPDAHAYFAPVLVVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLI 237 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 GI S G+ GA+ QM+SHGL+ ++LFF VG YDR HT + GG+ M + + Sbjct: 238 GIASFTDLGLSGAVLQMVSHGLIGASLFFLVGATYDRTHTLMLDEMGGVGKRMKKIFAMF 297 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT--------VAVLASFGVVLSALYSLWLY 428 +MA++ LPG SGF+ E ++ + F S+ V L + GV+L+ +Y L + Sbjct: 298 TTCSMASLALPGMSGFVAELMIFVG-FATSDAYSSTFKVIVVFLMAVGVILTPIYLLSML 356 Query: 429 RKVVFGVSKCEKV--QQLKDLSLRE----RCMVYPIAVLTVFFGIYP---VPIRDTFSVP 479 R++ +G E V Q L D RE C++ PI + G YP + D +V Sbjct: 357 REIFYGEENEELVSHQALIDAEPREVFIVACLLVPI----ISIGFYPKLLTQMYDATTVQ 412 Query: 480 LSSIIEN 486 L++ + + Sbjct: 413 LTARLRD 419 >gi|317011472|gb|ADU85219.1| NADH dehydrogenase subunit M [Helicobacter pylori SouthAfrica7] Length = 512 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 180/493 (36%), Positives = 282/493 (57%), Gaps = 24/493 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSAILAFFMS--AQASRAY---AIVIALIELLLVLLLWHGFDAQVTGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E +YH+G+DGI++ L++L +L S ++E+ +++ I L+LE + Sbjct: 64 EIKELAYQIGVNYHVGIDGITLFLLLLNAI----VVLLSVIYVKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGYYYASNYGMMSFDILDWYQLN-FSSEVKTWLFLAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+++ I L+L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEFYLTPIAVLALCMIIYGGFLAYTQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS++HMG V +GIF+ G+ GA+F M +HG++ LF G++ DR + + Sbjct: 299 LKTLIAYSSLSHMGVVVLGIFAFNVEGISGAVFMMFAHGIIVMGLFLLAGILEDRASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F A++A ++ Sbjct: 359 IARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLFAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRERCMVYPIAVLTVFFGIYP----VPI 472 LSA+Y L Y+ V FG K ++ +DL+ RE ++ I L + GIYP PI Sbjct: 419 LSAIYMLTSYKNVFFGNLKSGNNQISVFEDLNAREVGVLSVILALILVLGIYPKILLKPI 478 Query: 473 RDTFSVPLSSIIE 485 S L IIE Sbjct: 479 EQG-SKQLLEIIE 490 >gi|170665206|gb|ACB29143.1| NADH dehydrogenase subunit D [Cnicothamnus lorentzii] Length = 500 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 165/496 (33%), Positives = 274/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWS-VFDKGRSSF 62 P+L+I+ LP +I F + G R + I T+ + + + + +F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICTLELLLTTYAFCYLFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI +F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWIKFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNRSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|122000104|sp|Q2LCP7|NU4M_DICCI RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 Length = 414 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 135/318 (42%), Positives = 213/318 (66%), Gaps = 2/318 (0%) Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSI 176 L+ E ++I F + D++ YI +EASLIPM ++IGVWG +E+ AA++ +YT GSI Sbjct: 2 LLITEILIINFFAATDLVQLYIVYEASLIPMVIMIGVWGSRTEKKIAAFQILIYTLIGSI 61 Query: 177 FMLFAIVVMCWEKKTSSIIDLYA-MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 FML +I ++ T+ I + + P +++ ++I FF FA+KIP+ P H WL A Sbjct: 62 FMLMSIGLLYSTLGTTDYILIREYIEVLPENVRKIIFIGFFIGFAVKIPIAPLHLWLLRA 121 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+APTAGSV LAGI+LK+GGYG IR+ + LFP +Y+ P+I + LI+I+Y + ++ Sbjct: 122 HVEAPTAGSVLLAGILLKLGGYGYIRYNIGLFPDLCEYYFPIIGGICLISILYTGIATLT 181 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+K+++AYSSI+HM + +G+FSG+ G+EG + M+ HG+VS LF C+GVIYDR Sbjct: 182 QLDVKRIVAYSSISHMNVIVLGLFSGVLQGLEGGIILMIGHGIVSGGLFLCIGVIYDRCK 241 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR ++AY LVH MP A++ + + N+ P TS F+GE L+ + + + + +A ++ Sbjct: 242 TRILYAYNNLVHMMPIMAILFFLLVLGNIAFPITSNFVGELLIFIGLIKKNIIIAFFSAL 301 Query: 416 GVVLSALYSLWLYRKVVF 433 ++++A+YS WLY ++ F Sbjct: 302 SMIITAIYSFWLYNRIFF 319 >gi|170665188|gb|ACB29134.1| NADH dehydrogenase subunit D [Brachylaena elliptica] Length = 500 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 166/496 (33%), Positives = 274/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+IV LP +I F + G R + I + + + + + F + Sbjct: 5 PWLTIVVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDALI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 362 NEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|154362206|ref|YP_784528.2| NADH-plastoquinone oxidoreductase subunit 4 [Piper cenocladum] Length = 498 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 165/499 (33%), Positives = 274/499 (54%), Gaps = 17/499 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 N P+L+I+ P I F + G ++ ++ I + + + +V+ F Sbjct: 3 NFPWLTIIVVFPIFAGLFIFFLPHRGNKVVRWYTIS--ICLLELLLTTYVFCYHFKLDDP 60 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E Y WI F + LGVDG+SI ++LT F+T L++W + + R + L Sbjct: 61 LIQLEENYKWITIFDFHWKLGVDGLSIGPILLTGFITTLATLAAWPVTRYS-RLFHFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 120 AMYSGQIGSFSSRDLLLFFLMWELELIPVYLLLSMWGGEKRLYSATKFILYTAGGSIFLL 179 Query: 180 FAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ++ M ++L ++ +P +++ +I F ++A+K P+ P HTWLP+ H Sbjct: 180 IGVLGMGLYGSNEPTLNLETLANQSYPLALEIIFYIGFLIAYAVKSPIIPLHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q Sbjct: 240 EAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLILVGAIQIIYAASTSLGQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 300 NLKRRIAYSSISHMGFTIIGIGSITDTGLNGALLQIISHGFIGAALFFLAGTSYDRIRLV 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ MP+ + F+MA++ LPG SGFI E ++ + + + Sbjct: 360 YLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFIAELVIFFGIIISPQYLLIPKIVIT 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVS--KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 + + G++L+ +YSL + R++ +G C+K D RE + I + + GIY Sbjct: 420 FVVAIGMILTPIYSLSMLRQMFYGYKLFNCKK-SHFFDSGPRELFISICILLPVIGIGIY 478 Query: 469 PVPIRDTFSVPLSSIIENY 487 P + + +I+ NY Sbjct: 479 PDFVLSLSVDKVETILSNY 497 >gi|159161211|ref|YP_001542497.1| NADH-plastoquinone oxidoreductase subunit 4 [Ceratophyllum demersum] gi|193806222|sp|A8SEF4|NU4C_CERDE RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|148508494|gb|ABQ81501.1| NADH-plastoquinone oxidoreductase subunit 4 [Ceratophyllum demersum] Length = 500 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 168/496 (33%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P I F Y G ++ + + + + I F + F Q Sbjct: 5 PWLTIIVLFPISAGSFIFFLPYKGNKVIRWYTIGICLLELLLITYAFCY-FFQLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI++F + LG+DG+SI ++LT F+T L++W Q++ R + L + Sbjct: 64 LEEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTQDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + M I++ A +P +++ + F ++A+K+P+ P HTWLP+ H +A Sbjct: 183 LGMGLYGSNEPILNFETSANQSYPMALEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTVQIIYAASTSFGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGICSITDTGLNGAVLQIISHGFIGAALFFLAGTSYDRIRIVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV---AVLASF-- 415 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + VL +F Sbjct: 363 EMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSPKYLLMPKVLITFVM 422 Query: 416 --GVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 G++L+ +YSL + R++ +G K V D RE + I + + GIYP Sbjct: 423 AIGIILTPIYSLSMLRQMFYGY-KLFNVPNSYFVDSGPRELFISICILLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLLGDKVEDILSNY 497 >gi|225255|prf||1211235CP NADH dehydrogenase 4-like ORF 509B Length = 509 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 159/477 (33%), Positives = 264/477 (55%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P +I F + G ++ + + I + F + F Q Sbjct: 14 PWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYH-FQSDDPLIQ 72 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI++F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 73 LVEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 131 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 132 SGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSVFLLMGV 191 Query: 183 VVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ +P ++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 192 LGLALYGSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 251 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+L S+ Q ++K Sbjct: 252 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAALTSLGQRNLK 311 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 312 KRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLD 371 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 372 EMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLIPKILITFVM 431 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 432 AIGMILTPIYSLSMSRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYP 488 >gi|2924279|emb|CAA77432.1| NADH dehydrogenase ND4 subunit [Nicotiana tabacum] Length = 500 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 159/477 (33%), Positives = 264/477 (55%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYH-FQSDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI++F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ +P ++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGLALYGSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+L S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAALTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 363 EMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLIPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 423 AIGMILTPIYSLSMSRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYP 479 >gi|22417463|ref|NP_054557.2| NADH dehydrogenase subunit 4 [Nicotiana tabacum] gi|78102598|ref|YP_358737.1| NADH dehydrogenase subunit 4 [Nicotiana sylvestris] gi|2506938|sp|P06262|NU4C_TOBAC RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|122213588|sp|Q3C1Q4|NU4C_NICSY RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|77799625|dbj|BAE46714.1| NADH dehydrogenase ND4 subunit [Nicotiana sylvestris] Length = 500 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 159/477 (33%), Positives = 264/477 (55%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYH-FQSDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI++F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ +P ++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGLALYGSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+L S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAALTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 363 EMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLIPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 423 AIGMILTPIYSLSMSRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYP 479 >gi|122232943|sp|Q2VED0|NU4C_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|82754674|gb|ABB90088.1| NADH dehydrogenase subunit 4 [Solanum tuberosum] Length = 500 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 159/477 (33%), Positives = 263/477 (55%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYH-FQSDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WID+F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V + + + + +P ++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVALYGSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAY S++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYPSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 363 EMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLIPKLLITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 423 AIGIILTPIYSLSMPRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYP 479 >gi|194477312|ref|YP_002049491.1| NAD(P)H-quinone oxidoreductase subunit 4 [Paulinella chromatophora] gi|171192319|gb|ACB43281.1| NAD(P)H-quinone oxidoreductase subunit 4 [Paulinella chromatophora] Length = 526 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 168/498 (33%), Positives = 281/498 (56%), Gaps = 22/498 (4%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTI----NFIFSLFVWSV-FDKG 58 P+LS++ FLP G+ ++ +S R +G IST+ + + L+V+S FD Sbjct: 18 PWLSLIVFLPLFGILILPLTS---ADRDDLYG-PRSISTLFLSLDLVLILYVFSQHFDIN 73 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + Q++E W+ + + LGVDG+S LVVL+ +T +++SW +++ R Y Sbjct: 74 VGTLQLVERVPWVPFIGLEWSLGVDGLSAPLVVLSGLVTLLSVIASW-NVKNKTRLYFSL 132 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L+ S FLS D LLF++ +E L+P++++I +WGG R YAA KF LYT S+ Sbjct: 133 LLLQASAQAMVFLSQDFLLFFLSWELELVPIYLLIAIWGGQYRQYAATKFILYTALASLL 192 Query: 178 MLFAIVVMCWEKK--TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L + + + + T ++ +L S + + + ++ F F +K+P+FP HTWLP+A Sbjct: 193 ILISGLALAFSGNSFTLNLSELTVYSNYG-RLGFLCYLGFLIGFGVKLPIFPLHTWLPDA 251 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A S+ LAG++LKMGGY +RF + + P AP + L+ + I+Y + + Sbjct: 252 HGEANAPISMLLAGVLLKMGGYALLRFNVQMLPEIHIKLAPALVVLATVNIVYGAFNAFA 311 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V +GI S G+ GAM QM+SHGL+++++FF GV Y+R Sbjct: 312 QDNVKRRIAYSSISHMGFVLLGIASLNSLGINGAMLQMISHGLIAASMFFLTGVFYERTK 371 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV-FQNSNTV----- 409 T I GGL MP + ++A++ LPG SGFI E + + + Q S T+ Sbjct: 372 TLSIPNMGGLAKAMPITFAFFLASSLASLALPGMSGFISEITIFLGITTQESFTIVFRAI 431 Query: 410 -AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 ++++ G+VL+ +Y L L R+V FG + + + D+S RE + + V T+ G + Sbjct: 432 SVIVSAIGLVLTPIYLLSLCRRVFFG-QRIPALAVVGDMSPRETIVGLILLVPTLVIGFW 490 Query: 469 PVPIRDTFSVPLSSIIEN 486 P + D ++ S + + Sbjct: 491 PRIVIDFYTASTSDLANH 508 >gi|326772139|ref|ZP_08231424.1| NADH dehydrogenase I, M subunit [Actinomyces viscosus C505] gi|326638272|gb|EGE39173.1| NADH dehydrogenase I, M subunit [Actinomyces viscosus C505] Length = 534 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 171/508 (33%), Positives = 274/508 (53%), Gaps = 15/508 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW--SVFDKGR 59 +LP L+++ P G ++ L R A+G+ + +L +W S FD + Sbjct: 7 SLPVLTVMAVTPLAGALLLWLVPPL----RRLHARAVGLVFSLAVLALGLWALSAFDLAQ 62 Query: 60 -SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 S+ Q+ + + WI S+ LGV+G+ + +V+L F+TP +L+SW + + + Sbjct: 63 ASTVQLTDTHSWIPAIGASWALGVNGLGLSMVLLGAFVTPLVLLASWGEVPADRQGLFTG 122 Query: 118 F-LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L LE V+ F + D+LLFY+ FEA LIP++ +IG +GG R AA KF LY+ G + Sbjct: 123 LVLTLEFFVVVIFSARDLLLFYLCFEAMLIPVYFLIGCFGGQNRQRAALKFLLYSLAGGL 182 Query: 177 FMLFAIVVMCWEKKTSSI----IDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 ML ++ + + + ID A + S +W+++ FF +FAIK P+ P HTW Sbjct: 183 IMLIGVIAVSLHSAKNGVPSFLIDSVAANLHVSTSAGHWIFLTFFIAFAIKAPLVPVHTW 242 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+ QA SV L GI+ K+G +G I +LP+FP AS++ APVI L++++IIY L Sbjct: 243 LPDTAEQATPGTSVLLIGILDKIGTFGMITLVLPIFPEASRWAAPVILVLAVVSIIYGGL 302 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ Q ++ +LI+Y+S++H G++ +GIF G + GAM M++HGL + L+ G + Sbjct: 303 AAIAQNNLYRLISYTSVSHFGFMVLGIFIGNQVAANGAMVYMVAHGLSIAGLYLVTGFMA 362 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 R T I GG+ MP A +V +A++ LPG SGF+ E++V+ F S + Sbjct: 363 RRTGTVAISELGGIARVMPLVAGTFLVSGLASIALPGLSGFVPEWMVLTGTFSVSLALGG 422 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 A GVV++A+Y L Y++V G E+V DL RER +V PI + G+ P Sbjct: 423 AAVVGVVIAAVYMLLPYQRVFTGAPAPERVGS-PDLDGRERLVVVPIIAAMLALGLAPGV 481 Query: 472 IRDTFSVPLSSIIENYTLKTGYSDSVKG 499 + F + T + S +G Sbjct: 482 LTSAFDDVARQVALTVTSSSQAEASARG 509 >gi|169809248|gb|ACA84085.1| NADH dehydrogenase subunit 4 [Pocillopora damicornis] Length = 481 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 195/433 (45%), Positives = 277/433 (63%), Gaps = 10/433 (2%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLG-----VDGISILLVVLTTFLTPFCILS 102 +L W FD G S FQ W + F + G VDG+S++ ++LTTFL P CIL Sbjct: 41 TLVFWGGFD-GESHFQFFSLVEW-NIFSTLDWGPIVFAVDGVSLVFLLLTTFLIPICILI 98 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERI 161 S KSI+ F+E+++ LE ++IG F+ D+LLFY+FFE LIPMF +IG+WG E++ Sbjct: 99 SQKSIKFLFKEFLLCLFFLEFLLIGVFIVFDLLLFYLFFEGILIPMFFLIGIWGSREEKV 158 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAI 221 A++ FF +TF GS+F F I+ + T+ L + F +IQ W + F SFA+ Sbjct: 159 RASFYFFFFTFIGSLFFFFIILFLYQRIGTTDYFLLLNIKLF-LNIQKWALVGVFLSFAV 217 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ PFH WLP AHV+AP AGSV LAGI+LK+GGYG +RF PLFP AS Y++PVI F Sbjct: 218 KLPLIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGLLRFSWPLFPGASLYWSPVIVFF 277 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 S++A++Y L++ Q D K+L+AYSS+AHMG V +G+F+ + G+ GA+F ML+HG VSS Sbjct: 278 SVVAVVYGGLMTCRQIDFKRLVAYSSVAHMGLVPLGLFTNVIEGLIGALFLMLAHGFVSS 337 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF V +YDR HTR I Y GL MP + + M++ ++ANMG P + F+GEF +++ Sbjct: 338 ALFIGVTFLYDRHHTRLIKYYRGLTLTMPLFVITMLILSLANMGFPLSCNFVGEFFSLLA 397 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 VFQ V + GV+ SA+YSL L+ ++ FG + +DLS RE +++P ++ Sbjct: 398 VFQYHYGVGMFVILGVLFSAIYSLSLFNRISFG-GGSNYLLFNRDLSRREIFVIFPFLLI 456 Query: 462 TVFFGIYPVPIRD 474 GI P PI D Sbjct: 457 IFLGGIVPFPIID 469 >gi|109946833|ref|YP_664061.1| NADH dehydrogenase subunit M [Helicobacter acinonychis str. Sheeba] gi|109714054|emb|CAJ99062.1| NADH dehydrogenase I chain M [Helicobacter acinonychis str. Sheeba] Length = 512 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 171/455 (37%), Positives = 269/455 (59%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSAVLAFFMS--AQASRAY---AIVIALIELLLVLLLWHGFDTQVTGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + +YH+G+DGI++ L++L + +L S ++E+ +++ I FL+LE + Sbjct: 64 EIKELVYQIGVNYHVGIDGITLFLLLLNAIV----VLLSVIYVKEHRKDFAICFLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGYYYASNYGMMSFDILDWYQLN-FSSEVKTWLFLAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I L+L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYTLLRFLLPLFPELSEIYLTPIAVLALCMIIYGGFLAYTQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +GIF+ G+ GA+F M +HG+V+ LF G++ DR + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGIFAFNVEGISGAVFMMFAHGIVAMGLFLLAGILEDRASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + N P +A M+ MANMG+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKNAPIFAAFFMIVLMANMGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKNVFFGNLKTGNNQISVFEDLNARE 453 >gi|170665286|gb|ACB29183.1| NADH dehydrogenase subunit D [Nouelia insignis] Length = 500 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 165/496 (33%), Positives = 274/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LGVDG+SI+ V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGVDGLSIVPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYFLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665168|gb|ACB29124.1| NADH dehydrogenase subunit D [Adenocaulon bicolor] Length = 500 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 154/442 (34%), Positives = 256/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEILFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMLRQMFYG 443 >gi|170665162|gb|ACB29121.1| NADH dehydrogenase subunit D [Acourtia turbinata] Length = 500 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 274/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ ++I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIIYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGLYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885347|gb|AAO26154.1| NADH dehydrogenase subunit 4 [Rojasianthe superba] Length = 469 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 156/443 (35%), Positives = 256/443 (57%), Gaps = 16/443 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I T+ + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPHK---GNRVIRWYTICICTLELLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLIIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIVTSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFG 434 + + G++L+ +Y L + R++ +G Sbjct: 421 VMAIGMILTPIYLLSMLRQIFYG 443 >gi|126657862|ref|ZP_01729015.1| NAD(P)H-quinone oxidoreductase subunit D4 [Cyanothece sp. CCY0110] gi|126620802|gb|EAZ91518.1| NAD(P)H-quinone oxidoreductase subunit D4 [Cyanothece sp. CCY0110] Length = 500 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 183/470 (38%), Positives = 269/470 (57%), Gaps = 10/470 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFF-GVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS + +P LG +I +S G R F+ +AL ++I +L + FD + Q Sbjct: 3 LSALIVIPLLGAIII--ASLPGKQDRGFYRSLALIFTSILLGLTLLIGFQFDLNNPNIQF 60 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 E+ WI +YHLGVDG+S LV L + LT I SS K+I+ + R Y LVL S Sbjct: 61 NEFIPWITGIGLNYHLGVDGLSFPLVFLNSLLTLIAIYSSDKNIERS-RFYYALILVLNS 119 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 V GAFL+ D+LLF++F+E +IP++ +I +WGG +R YAA KF LYT I +L + + Sbjct: 120 GVSGAFLAQDVLLFFLFYELEIIPLYFLIAIWGGGKRGYAAMKFLLYTAVSGILVLASFL 179 Query: 184 VMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + W S+ + P S Q + AIKIP+FPFHTWLP+AHV+A T Sbjct: 180 GLVWLSGASTFDYEPLRSHNLPLSTQLLLLAPLLIGLAIKIPIFPFHTWLPDAHVEASTP 239 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 SV LAG++LK+G YG +RF + LF A Y AP + L+ I+ +Y + ++VQ D+KK+ Sbjct: 240 VSVLLAGVLLKLGTYGLLRFGVGLFLDAWVYLAPWLATLAAISALYGASCAIVQKDMKKV 299 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 +AYSSIAHM Y+ + + + + A FQM+SHGL+S+ LF VGV+Y + +RD+ Sbjct: 300 VAYSSIAHMAYILLAAAATTRLSITAATFQMVSHGLISAMLFLLVGVVYKKTGSRDVDFL 359 Query: 363 GGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL++ +P ++++ MA+ G+PG GFI EFLV F +L G L Sbjct: 360 RGLLNPQRGLPITGSLIILGVMASAGIPGMVGFIAEFLVFRGSFPIFPIQTLLCLVGSGL 419 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +A+Y L + KV FG E++ Q+ + ER + +A+L V GI P Sbjct: 420 TAVYFLLMVNKVFFG-RLTEELSQIPKVLWSERFPAFVLALLIVILGIQP 468 >gi|170665226|gb|ACB29153.1| NADH dehydrogenase subunit D [Duidaea pinifolia] Length = 500 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 164/495 (33%), Positives = 274/495 (55%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPHKGNRVMRWYTICICILDLLLTTYAFCYH-FQLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVGLYGSNEPTFNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ ++ F+MA++ LPG SGF+ E +V + + + + + Sbjct: 363 EMGGVAIPMPKIFTMVSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +YSL + R++ +G + D RE + I + + G+YP + Sbjct: 423 AIGMILTPIYSLSMSRQMFYGYKLFNTPNSYIFDSGPRELFVSISIFLPVIGIGMYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + I+ NY Sbjct: 483 LSLSVDKVEGILSNY 497 >gi|290486867|gb|ADD29818.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Rhododendron simsii] Length = 500 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 165/479 (34%), Positives = 273/479 (56%), Gaps = 17/479 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP F+I+F + G R+ L + + + +V+S F Sbjct: 5 PWLTIIVVLPIFAGFLIVFLPH--RGNRAIRWYTLSTCILELLLTTYVFSYHFQSDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI +F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWIHFFYFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + A +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYSSNEPTFNFETLANQSYPVALEIIFYIGFFIAFAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRVNMELLPHAHSIFSPWLMIVGTMQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR + Sbjct: 302 KKRIAYSSVSHMGFLIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRTRLAYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV---AVLASF- 415 GG+ MP+ ++ + F+MA++ LPG SGF+ E + + + + +L +F Sbjct: 362 DEIGGIAIPMPKIFMMFISFSMASLALPGMSGFVTELTIFFGIITSQKFLLMPKILMTFV 421 Query: 416 ---GVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 G++L+ +Y L + R++ +G K V D RE + I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGY-KLFNVPNSSFFDSGPRELFVSISIFLPVIGIGIYP 479 >gi|170665210|gb|ACB29145.1| NADH dehydrogenase subunit D [Cyclolepis genistoides] Length = 500 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 274/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLV 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + + ++ +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEATLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGISSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ ++ F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMLSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|81301628|ref|YP_398923.1| NADH dehydrogenase subunit 4 [Nicotiana tomentosiformis] gi|122245642|sp|Q33BX2|NU4C_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|80750987|dbj|BAE48063.1| NADH dehydrogenase ND4 subunit [Nicotiana tomentosiformis] Length = 500 Score = 270 bits (689), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 160/477 (33%), Positives = 263/477 (55%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYH-FQSDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI++F + LG+DG+SI ++LT F+T L++W I + R + L + Sbjct: 64 LVEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-ITRDSRLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V + + + + +P ++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVALYGSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 363 EMGGIASPMPKMFTMFSSFSMASLALPGMSGFVAELIVFFGIITGQKYLLIPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 423 AIGMILTPIYSLSMSRQMFYGYKLFNAPKDSFFDSGPRELFLSISIFLPVIGIGIYP 479 >gi|114329707|ref|YP_740527.1| NADH-plastoquinone oxidoreductase subunit 4 [Citrus sinensis] gi|122166141|sp|Q09MC6|NU4C_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|113952673|gb|ABI49071.1| NADH-plastoquinone oxidoreductase subunit 4 [Citrus sinensis] Length = 499 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 154/438 (35%), Positives = 253/438 (57%), Gaps = 12/438 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI +F + LG+DG+SI ++LT F+T L++ + + N R + L + Sbjct: 63 QLAEDYKWITFFEFDWRLGIDGLSIGPILLTGFITTLATLAA-RPVTLNSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ VWGG +R+Y+A KF LYT GS+F+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSVWGGKKRLYSATKFILYTAGGSVFLLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++L + +P +++ +I FF +FA+K+P+ PFHTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNLETLVNRSYPVALEIIFYIGFFIAFAVKLPIIPFHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ +GI S +G+ GA+ Q++SHGL+S+ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GGL +P+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 362 DEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENYTL 489 + + +II N+ L Sbjct: 482 VLSLSADKAEAIISNFFL 499 >gi|33239625|ref|NP_874567.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81835873|sp|Q7VE41|NU4C_PROMA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|33237150|gb|AAP99219.1| NAD(P)H-quinone oxidoreductase chain 4 [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 557 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 168/504 (33%), Positives = 278/504 (55%), Gaps = 19/504 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 + P+LS+ P G ++ F G G++ + AL I+ F+ ++ + F+ Sbjct: 24 DFPWLSLSILFPIAGSLLVPFIPDEGEGKQVRW-YALFIALTTFLITVGAYLKGFEPAEE 82 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E W+ D ++ +G DG+S+ L++LT+F+T +L++W +F+ + FL Sbjct: 83 GLQLSERVPWLPDLGLTWAVGADGLSMPLILLTSFITALAVLAAWPV---SFKPKLFFFL 139 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L + I F DMLLF++ +E L+P+++++ +WGG +R YAA KF +YT S+F Sbjct: 140 ILAMDGGQIAVFAVQDMLLFFLAWELELLPVYLLLAIWGGKKRQYAATKFIIYTAGSSLF 199 Query: 178 MLFAIVVMCWEKKTSSIIDL--YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L A + M + + + A +F Q + +F +K+P+ P HTWLP+A Sbjct: 200 ILLAGLAMGFFGGGAPNFEFTHLANQQFGTGFQLLCYGGLLIAFGVKLPIVPLHTWLPDA 259 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY +RF L P A FAP++ L ++ IIYA+L S Sbjct: 260 HGEATAPVHMLLAGILLKMGGYALLRFNAQLLPAAHAQFAPLLIVLGVVNIIYAALTSFA 319 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR H Sbjct: 320 QRNLKRKIAYSSISHMGFVLIGIGSFSTLGTSGAMLQMISHGLIGASLFFLVGATYDRTH 379 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG+ M + V ++A++ LPG SGF+ E +V + + Sbjct: 380 TLQLNEMGGVGQKMRIMFALWTVCSLASLALPGMSGFVSELMVFAGLVTDEVYTLPFRIV 439 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCE--KVQQLKDLSLRERCMVYPIAVLTVFFG 466 +A LA+ GV+L+ +Y L + R++ FG + ++L D RE ++ + V + G Sbjct: 440 IAGLAAIGVILTPIYLLSMLREIFFGQENVDLLAKRELVDAEPREIYIIGSLLVPIIGIG 499 Query: 467 IYPVPIRDTFSVPLSSIIENYTLK 490 +YP + +T++ + ++ L Sbjct: 500 LYPRIMTETYTASIDGLVARDKLS 523 >gi|116071514|ref|ZP_01468782.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. BL107] gi|116065137|gb|EAU70895.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. BL107] Length = 548 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 173/502 (34%), Positives = 277/502 (55%), Gaps = 23/502 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 +P+LS+ +P G +I F G G++ + AL ++ I F+ ++ + + +D S Sbjct: 16 TVPWLSLSILVPIGGALLIPFIPDQGEGKQIRW-YALIVTLITFLITVAGYLTGYDPSLS 74 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E W+ + ++ +G DG+S+ L++LT+F+T L++W + R + L Sbjct: 75 GLQLFERVSWLPEIGLTWTVGADGLSMPLILLTSFITSLACLAAWP-VTFKPRLFFFLLL 133 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++ I F DMLLF++ +E L+P+++++ +WGG +R YAA KF LYT S+F+L Sbjct: 134 AMDGGQIAVFAVQDMLLFFLAWELELLPVYLLLAIWGGKKRQYAATKFILYTAGSSLFIL 193 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A + M + + + A++ F Q + +F +K+P+ P HTWLP+AH Sbjct: 194 LAALAMGFFGGGTPSFEYTALAAKDFGSGFQLLCYAGLLIAFGVKLPIVPLHTWLPDAHG 253 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +RF L P A FAP++ L ++ IIYA+L S Q Sbjct: 254 EATAPVHMLLAGILLKMGGYALLRFNCELLPAAHAQFAPLLIVLGVVNIIYAALTSFAQR 313 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR HT Sbjct: 314 NLKRKIAYSSISHMGFVLIGIGSFSVLGSSGAMLQMISHGLIGASLFFLVGATYDRTHTL 373 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ M + V +A++ LPG SGF+ E ++ + + Sbjct: 374 LLDEMGGIGQKMRIMFALWTVCALASLALPGMSGFVSELMIFAGFATDEAYTLPFRVVIC 433 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLTVF 464 LA+ GVVL+ +Y L + R++ FG K E V L D RE C++ PI + Sbjct: 434 GLAAVGVVLTPVYLLSMLREIFFGKEKAELVSHTNLVDAEPREVYIIGCLLVPI----IG 489 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G+YP + D+FS + +++ Sbjct: 490 IGLYPRLMTDSFSSSIEALVSR 511 >gi|323149132|ref|YP_004222696.1| NADH-plastoquinone oxidoreductase subunit 4 [Anthriscus cerefolium] gi|289645625|gb|ADD13688.1| NADH-plastoquinone oxidoreductase subunit 4 [Anthriscus cerefolium] Length = 509 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 159/477 (33%), Positives = 268/477 (56%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP VI F + G ++ + + I + F + F Q Sbjct: 14 PWLTIIVILPIFAGSVIFFIPHRGNRVIRWYTICICILELLLTTYAFCYH-FQLDDPLIQ 72 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E + WI++F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 73 LVEDFKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 131 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 132 SGQIGLFASRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLMGV 191 Query: 183 VVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + T ++ + +P +++ ++I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 192 LGVGLYGSTEPTLNFETLVNQSYPVALEIILYIGFFIAFAVKLPIIPLHTWLPDTHGEAH 251 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + A F+P + + I IIYA+ S+ Q ++K Sbjct: 252 YSTCMLLAGILLKMGAYGLIRINMEFLSHAHSIFSPWLVIVGTIQIIYAASTSLGQRNLK 311 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 312 KRIAYSSVSHMGFILIGIGSINDTGLNGAILQIVSHGFIGAALFFLAGTSYDRIRLVYLD 371 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ EFLV + + + + Sbjct: 372 EMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAEFLVFFGIITSQKYLLISKLGITFVM 431 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 432 AIGIILTPIYSLSMLRQMFYGYKLFNAPNSYVFDSGPRELFVSIAIFIPVIGIGMYP 488 >gi|223936520|ref|ZP_03628431.1| proton-translocating NADH-quinone oxidoreductase, chain M [bacterium Ellin514] gi|223894684|gb|EEF61134.1| proton-translocating NADH-quinone oxidoreductase, chain M [bacterium Ellin514] Length = 518 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 169/500 (33%), Positives = 272/500 (54%), Gaps = 40/500 (8%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P +S +TF+P +G I+ +R + LG S + + +W FD Q Sbjct: 5 PLISTITFIPLIGA--IMLVGLDAERKRLARCLGLGFSLASLVLVAVMWIHFDSSAIDLQ 62 Query: 64 MIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E + WI F + Y +GVDG+ +L+V+LT +TP +LSSW+ I E Y L LE Sbjct: 63 FVERHPWIPSFSAEYFVGVDGLGLLMVLLTALVTPMAMLSSWR-ISEKVPIYFAMMLFLE 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + ++G F +L+ +++F+E SL+P F +I +WGG R AA +FF+YT GS+ ML + Sbjct: 122 AGLLGTFTALNCFHWFLFWELSLVPAFFLIKLWGGPNRSAAATQFFVYTMVGSVAMLLSF 181 Query: 183 V-----------VMCWEK----KTSSIIDL----YAMSKFPFSIQYWMWIAFFCSFAIKI 223 + V EK + +S+++L Y ++ F + +++ F FA+K+ Sbjct: 182 LAIYLAAHTFDFVQLAEKGHTGELASMLNLNLGVYGLNSRQFPL--FIFAGIFLGFAVKV 239 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 P+ PFHTWLP + +APT ++ L G M KMG YG IR L+P FP + + +L++ Sbjct: 240 PLIPFHTWLPTTYAEAPTGTTMLLTGAMSKMGVYGFIRILMPFFPEQMRIIMTPLLWLAV 299 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMK-------------SGVEGAM 330 I I++++ + VQ D+KK+ AYSSI H+GY +G+F+ K + + G M Sbjct: 300 ITIVFSAYSAFVQKDLKKVFAYSSINHLGYCLLGVFAFAKFTGSDAHWNLEKAAAMNGVM 359 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHT-RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 QM +HGL +S LF +G + R RD+ +GGL P + +M + A++GLPG Sbjct: 360 LQMFNHGLTASILFCFIGFLEQRSGGLRDLDQFGGLRRVAPVFCGLMGISIFASLGLPGL 419 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 +GFIGEFL+ F ++ G++++A++ L + ++V G K L DL+L Sbjct: 420 NGFIGEFLIFKGSFPIVTWATAMSVIGLLVTAIFLLTIIQRVFNGPLNA-KWAGLPDLTL 478 Query: 450 RERCMVYPIAVLTVFFGIYP 469 +E +V P L + GIYP Sbjct: 479 KECLLVLPATALMLVMGIYP 498 >gi|78675219|dbj|BAE47645.1| NADH dehydrogenase subunit 4 [Lactuca sativa] Length = 460 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 153/436 (35%), Positives = 252/436 (57%), Gaps = 12/436 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 23 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 81 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 82 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 141 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 142 VLGVGLSGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 201 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 202 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 261 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 262 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 321 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 322 DQMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 381 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 382 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNAYVFDSGPRELFVSISIFLPVIGIGMYPDF 441 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 442 VLSLSVDKVEGILSNY 457 >gi|170665284|gb|ACB29182.1| NADH dehydrogenase subunit D [Nassauvia pygmaea] Length = 500 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WID+F + LG+DG+SI V LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWIDFFDFRWKLGIDGLSIGPVFLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + + ++ +P +++ ++I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNAPTLNFETSVNQSYPVALEIIIYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLIIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|78183874|ref|YP_376308.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. CC9902] gi|123582178|sp|Q3B063|NU4C_SYNS9 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|78168168|gb|ABB25265.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus sp. CC9902] Length = 548 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 172/502 (34%), Positives = 276/502 (54%), Gaps = 23/502 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 +P+LS+ +P G +I F G G++ + AL ++ I F+ ++ + + +D S Sbjct: 16 TVPWLSLSILVPIGGALLIPFIPDQGEGKQIRW-YALIVTLITFLITVAAYLTGYDPSLS 74 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E W+ + ++ +G DG+S+ L++LT+F+T L++W + R + L Sbjct: 75 GLQLFERVSWLPEIGLTWTVGADGLSMPLILLTSFITSLACLAAWP-VTFKPRLFFFLLL 133 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++ I F DMLLF++ +E L+P+++++ +WGG +R YAA KF LYT S+F+L Sbjct: 134 AMDGGQIAVFAVQDMLLFFLAWELELLPVYLLLAIWGGKKRQYAATKFILYTAGSSLFIL 193 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A + M + + + A++ F Q + +F +K+P+ P HTWLP+AH Sbjct: 194 LAALAMGFFGGGTPSFEYTALAAKDFGSGFQLLCYAGLLIAFGVKLPIVPLHTWLPDAHG 253 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + LAGI+LKMGGY +RF L P A FAP++ L ++ IIYA+L S Q Sbjct: 254 EATAPVHMLLAGILLKMGGYALLRFNCELLPAAHAQFAPLLIVLGVVNIIYAALTSFAQR 313 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR HT Sbjct: 314 NLKRKIAYSSISHMGFVLIGIGSFSVLGSSGAMLQMISHGLIGASLFFLVGATYDRTHTL 373 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ M + V +A++ LPG SGF+ E ++ + + Sbjct: 374 LLDEMGGIGQKMRIMFALWTVCALASLALPGMSGFVSELMIFAGFATDEAYTLPFRVVIC 433 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLTVF 464 LA+ GVVL+ +Y L + R++ FG K E L D RE C++ PI + Sbjct: 434 GLAAVGVVLTPVYLLSMLREIFFGKEKAELASHTNLVDAEPREVYIIGCLLVPI----IG 489 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 G+YP + D+FS + +++ Sbjct: 490 IGLYPRLMTDSFSSSIEALVSR 511 >gi|170665256|gb|ACB29168.1| NADH dehydrogenase subunit D [Hesperomannia arbuscula] Length = 500 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 165/496 (33%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP ILF + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFILFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + I + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPIFNFETSVNQSYPMALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|330850675|ref|YP_004376556.1| NADH-plastoquinone oxidoreductase subunit 4 [Ptilidium pulcherrimum] gi|302024804|gb|ADK89650.1| NADH-plastoquinone oxidoreductase subunit 4 [Ptilidium pulcherrimum] Length = 502 Score = 269 bits (688), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 164/464 (35%), Positives = 271/464 (58%), Gaps = 19/464 (4%) Query: 2 NLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 + P+L+I+ P G+ + FSS G R+ LG+ + F+ +++ + Sbjct: 3 HFPWLTIIVLFPISAGLLIPFFSSQ---GNRTIRWYTLGVCLLEFLLITYIFCYHYQFNN 59 Query: 60 SSFQMIEYYHWIDYFCSYH--LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 ++ Q+ E Y+WI+ F +H LG+DG SI L++LT F+T L++W + N + Sbjct: 60 NNIQLKEDYNWIN-FMDFHWRLGIDGFSIGLILLTGFVTTLATLAAWP-VTRNPELFYFL 117 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L + S IG F S D+LLF+ +E L+P+++++ +WGG R+YAA KF LYT SIF Sbjct: 118 MLAMYSGQIGLFASQDILLFFFMWELELLPIYLLLIIWGGKRRLYAATKFILYTASSSIF 177 Query: 178 MLFAIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L ++M + + SSI D ++ +P ++ ++ +F ++A+K+P+ PFHTWLP+ Sbjct: 178 ILVGALIMGFHESNSSIFDFQSLISKTYPLELEVIIYSSFLIAYAVKLPILPFHTWLPDT 237 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + + LAGI+LK GGYG +R + L P A FAP + + I+Y++L S+ Sbjct: 238 HGEAHYSTCMLLAGILLKSGGYGLVRINMELLPHAHYLFAPWLVSVGAFQIVYSALTSLS 297 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSS++HMG+V IGI S G+ GA+ QM+SHGL+ ++LFF G+ YDR Sbjct: 298 QRNLKRRIAYSSVSHMGFVLIGIGSITNIGLNGAILQMISHGLIGTSLFFLSGISYDRTR 357 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 T + GG+ MP+ + F+MA++ LPGTSGF GE ++ + + N N T Sbjct: 358 TLFLHEMGGIATKMPKIFALFTSFSMASLALPGTSGFAGELMIFLGIVDNPNYSFVFRMT 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRE 451 + + + G++L+ +Y L + R++ +G + L D RE Sbjct: 418 IIAIQAIGIILTPIYLLSMLRQMFYGYKLSNISITYLMDAGPRE 461 >gi|27885263|gb|AAO26112.1| NADH dehydrogenase subunit 4 [Inula britannica] Length = 469 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 155/441 (35%), Positives = 256/441 (58%), Gaps = 12/441 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ V + + + F + F Q Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPHKGNRVIRWYTVCICMLELLLTTYAFCYH-FQLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WID+F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWIDFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V + + + + +P +++ +IAFF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIAFFIAFAVKSPILPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLIIVGTIQIIYAASTSPGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 363 EMGGVAIPMPKIFTMFISFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 423 AIGMILTPIYLLSMSRQMFYG 443 >gi|170665262|gb|ACB29171.1| NADH dehydrogenase subunit D [Hyalis argentea] Length = 500 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 156/442 (35%), Positives = 255/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LGVDG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGVDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 S G++L+ +YSL + R++ +G Sbjct: 422 MSIGMILTPIYSLSMSRQMFYG 443 >gi|170665312|gb|ACB29196.1| NADH dehydrogenase subunit D [Psacalium paucicapitatum] Length = 500 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 153/442 (34%), Positives = 257/442 (58%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R+ + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRAIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSLGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 422 MAIGIILTPIYLLSMLRQMFYG 443 >gi|170665228|gb|ACB29154.1| NADH dehydrogenase subunit D [Echinops ritro] Length = 500 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 165/496 (33%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYALCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGISSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665322|gb|ACB29201.1| NADH dehydrogenase subunit D [Senecio polypodioides] Length = 500 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 164/498 (32%), Positives = 273/498 (54%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 N P+L+I+ LP +I F + G R+ + I + + + + + F Sbjct: 3 NFPWLTIIVVLPIFAGSLIFFLPH--KGNRTIRWYTICICMLELLLTTYAFCYHFQFDDP 60 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q++E Y WI +F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 61 LIQLVEDYKWISFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 120 AMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSIFLL 179 Query: 180 FAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H Sbjct: 180 MGVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q Sbjct: 240 EAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 300 NLKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLV 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 360 YLDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAIT 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK-DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G D RE + I + + G+YP Sbjct: 420 FVMAIGMILTPIYLLSMSRQMFYGYKLFNTTNSFVFDSGPRELFVSISIFLPVIGIGMYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 480 DFVLSLSVDKVEGILSNY 497 >gi|163849128|ref|YP_001637172.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroflexus aurantiacus J-10-fl] gi|222527100|ref|YP_002571571.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroflexus sp. Y-400-fl] gi|163670417|gb|ABY36783.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroflexus aurantiacus J-10-fl] gi|222450979|gb|ACM55245.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroflexus sp. Y-400-fl] Length = 532 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 162/432 (37%), Positives = 257/432 (59%), Gaps = 27/432 (6%) Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q ++ W+ F SY +GVDGI++ LV LT FL PF I ++W+ + R + L+ Sbjct: 73 LQFVDSIAWLPAFGASYFIGVDGINLWLVGLTAFLAPFAIAATWQRQTRSLRLLLALLLL 132 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 E+ +G FL+ DMLLFY+F+E +LIPM ++G+WGG R AA K FLYTF GS+ ML Sbjct: 133 AETAFLGVFLAQDMLLFYVFYELALIPMVFLVGMWGGHGRAAAALKLFLYTFSGSLLMLL 192 Query: 181 AIV-VMCWEKKTSSIID-----LYAMSKFPFSIQYWMWI-----------AFFCSFAIKI 223 AI+ + + + ++ +A+++ ++ ++ AFF +FAIK+ Sbjct: 193 AIIGLHILHRNAIAAVEPGYTGTFALNQIVADLRAGLFTLDPLVARLLFGAFFVAFAIKL 252 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 ++PFHTWLP+A+ APT ++ LAG+M K G YG IRF LFP + APV+ L++ Sbjct: 253 ALWPFHTWLPDAYSVAPTPVAIILAGLMAKFGVYGLIRFNATLFPEVMSWVAPVVAVLAV 312 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 I IIY +L++ Q D++++IAY+SI+HM +V +G+ + G+ GA+FQM++HG++ +AL Sbjct: 313 IGIIYGALIAFTQRDMQRMIAYASISHMNFVALGVMALNTIGINGALFQMVAHGVMMAAL 372 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 V VI +R +RD GGL P YA + ++ +A GLPG SGF+GEF ++ +F Sbjct: 373 LLIVAVIEERRDSRDFSTLGGLWQVTPVYAGLTLLTLLAMAGLPGLSGFVGEFTMLQGIF 432 Query: 404 QN---SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 + A+ A+ G++L+A+Y+L ++ G + L DL +RC + + V Sbjct: 433 TSPLLGWPFAIGAAIGIILAAVYALRVFHMGFMGEVRNTAHLDLPDL---QRCELLTLGV 489 Query: 461 LT---VFFGIYP 469 L V G++P Sbjct: 490 LAAAMVVLGLFP 501 >gi|170665320|gb|ACB29200.1| NADH dehydrogenase subunit D [Scolymus maculatus] Length = 500 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP ILF + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFILFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYILLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSVNHSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DQMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSSVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|157144289|ref|YP_001456710.1| NADH dehydrogenase subunit 4 [Pocillopora damicornis] gi|157149644|ref|YP_001456724.1| NADH dehydrogenase subunit 4 [Pocillopora eydouxi] gi|139471337|gb|ABO77154.1| NADH dehydrogenase subunit 4 [Pocillopora damicornis] gi|139471352|gb|ABO77168.1| NADH dehydrogenase subunit 4 [Pocillopora eydouxi] Length = 496 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 195/433 (45%), Positives = 277/433 (63%), Gaps = 10/433 (2%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLG-----VDGISILLVVLTTFLTPFCILS 102 +L W FD G S FQ W + F + G VDG+S++ ++LTTFL P CIL Sbjct: 56 TLVFWGGFD-GESHFQFFSLVEW-NIFSTLDWGPIVFAVDGVSLVFLLLTTFLIPICILI 113 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERI 161 S KSI+ F+E+++ LE ++IG F+ D+LLFY+FFE LIPMF +IG+WG E++ Sbjct: 114 SQKSIKFLFKEFLLCLFFLEFLLIGVFIVFDLLLFYLFFEGILIPMFFLIGIWGSREEKV 173 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAI 221 A++ FF +TF GS+F F I+ + T+ L + F +IQ W + F SFA+ Sbjct: 174 RASFYFFFFTFIGSLFFFFIILFLYQRIGTTDYFLLLNIKLF-LNIQKWALVGVFLSFAV 232 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ PFH WLP AHV+AP AGSV LAGI+LK+GGYG +RF PLFP AS Y++PVI F Sbjct: 233 KLPLIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGLLRFSWPLFPGASLYWSPVIVFF 292 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 S++A++Y L++ Q D K+L+AYSS+AHMG V +G+F+ + G+ GA+F ML+HG VSS Sbjct: 293 SVVAVVYGGLMTCRQIDFKRLVAYSSVAHMGLVPLGLFTHVIEGLIGALFLMLAHGFVSS 352 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF V +YDR HTR I Y GL MP + + M++ ++ANMG P + F+GEF +++ Sbjct: 353 ALFIGVTFLYDRHHTRLIKYYRGLTLTMPLFVITMLILSLANMGFPLSCNFVGEFFSLLA 412 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 VFQ V + GV+ SA+YSL L+ ++ FG + +DLS RE +++P ++ Sbjct: 413 VFQYHYGVGMFVILGVLFSAIYSLSLFNRISFG-GGSNYLLFNRDLSRREIFVIFPFLLI 471 Query: 462 TVFFGIYPVPIRD 474 GI P PI D Sbjct: 472 IFLGGIVPFPIID 484 >gi|27885376|gb|AAO26169.1| NADH dehydrogenase subunit 4 [Trichocoryne connata] Length = 417 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYRWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + T ++ +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSTEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLIIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMLRQIFYG 391 >gi|170665292|gb|ACB29186.1| NADH dehydrogenase subunit D [Onoseris hastata] Length = 500 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R L I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTLCICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I +IYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQVIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGIILTPIYSLSMLRQMFYGYKLFNIANSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|281190760|ref|YP_003330999.1| NADH dehydrogenase subunit 4 [Parthenium argentatum] gi|269924873|gb|ACZ52746.1| NADH dehydrogenase subunit 4 [Parthenium argentatum] Length = 500 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEILFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMSRQIFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|89095643|ref|ZP_01168537.1| NADH dehydrogenase subunit M [Bacillus sp. NRRL B-14911] gi|89089389|gb|EAR68496.1| NADH dehydrogenase subunit M [Bacillus sp. NRRL B-14911] Length = 504 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 176/507 (34%), Positives = 291/507 (57%), Gaps = 31/507 (6%) Query: 1 MNLPF-LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR 59 M P+ LS++ F P G+ V+LF R+ + L + I +L + ++ G Sbjct: 1 MTFPYYLSVLVFSPLAGLLVLLFVPK--AKERAIKWIGLAAALPAAILALAAYFIYHSGA 58 Query: 60 SSFQMIEYYHWI---------DYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE 109 +M E WI DYF SY LG DG S+++++LT+FL +S++ I + Sbjct: 59 GLEEMDERADWIQFGHPDLVGDYFKISYELGADGFSMIMILLTSFLALLAAAASFR-ITK 117 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFL 169 ++ Y + FL+LE+ ++G F + ++ LF++FFE +LIPMF +IG WG E+ AA+ F + Sbjct: 118 EWKGYFMLFLLLETGMLGVFAAENLFLFFLFFEITLIPMFFLIGKWGLFEKEKAAFSFLI 177 Query: 170 YTFFGSIFMLFAIVVMCWEKKTSSIIDLY--------AMSKFPFSIQYWMWIAFFCSFAI 221 Y GS +L +V+ T+++ +L A+S F ++ ++IA +F + Sbjct: 178 YNGLGSAILLIVFIVLFARTGTANMEELQIIMQGGAQAISPFSEELKLGLFIALLIAFGV 237 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+FP H+W+ H +AP + + AGI+LK+G +G IRF L FP Q +I L Sbjct: 238 KLPIFPLHSWMVRVHAEAPASVVMLHAGILLKIGAFGLIRFGLGFFPEQFQQLGLLISIL 297 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 + ++Y + ++ +Q D +K++AYSSI+HMG V IG+ + ++GV+GA+FQ++SHGL+S+ Sbjct: 298 GAVNLLYGAFLAFIQDDFRKVLAYSSISHMGIVLIGLGALNEAGVQGAIFQVVSHGLISA 357 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 LF+ VG +Y+R+ T I GGL MP A ++ MA++G+PG SGFI EF+ + Sbjct: 358 LLFYLVGALYERVETSSIKKLGGLSRQMPLAAGFLLAGAMASLGMPGMSGFISEFMAFLG 417 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE--KVQQLKDLSLRERCMVYPIA 459 +F+N VA +A+ G++L+A+Y L V FG ++ + V LK L + ++ Sbjct: 418 LFENRPAVAAVAALGIILTAVYLLRAVLGVTFGEARSDYGNVTDLKALEMMPAVLLVGAI 477 Query: 460 VLTVFFGIYPVPIRDTFSVPLSSIIEN 486 VL G+YP+ I S PL ++E Sbjct: 478 VL---IGVYPLAI----SAPLQPVLET 497 >gi|27885203|gb|AAO26082.1| NADH dehydrogenase subunit 4 [Delilia biflora] Length = 417 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 144/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WID+F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWIDFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNKSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|71906204|ref|YP_283791.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dechloromonas aromatica RCB] gi|71845825|gb|AAZ45321.1| NADH dehydrogenase subunit M [Dechloromonas aromatica RCB] Length = 481 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 162/475 (34%), Positives = 273/475 (57%), Gaps = 20/475 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSF--FGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 L ++ FLP +G ++ RR+ + VA+ + + ++L++ + F+ ++ Q Sbjct: 2 LKVLVFLPVVGAVLLAVLP----ARRALPLWQVAMAFALASLGYALWLATRFEPAGAAVQ 57 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 M E W SY LGVDGIS+ +V+LT L+ +L S + +++ R Y + L+LE Sbjct: 58 MFESRAWNVRLGSYFALGVDGISLAMVLLTALLSLIAVLVS-RRMEQGARLYFMLVLLLE 116 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S + G F + D LFY+F+EA+L+P+F +I GG R AA FFLYT GS+FML A+ Sbjct: 117 SAMFGVFTARDWSLFYVFWEATLLPLFFLIDRLGGPNRQRAALNFFLYTLGGSVFMLVAL 176 Query: 183 VVM--CWEKKTSSIIDLYAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + ++ D+ + P + Q ++ F F +K+P+FP H WLP AHV+A Sbjct: 177 LFLYDAAPGHSFAMADMAEGGRGLPLNTQLLIFAGLFIGFGVKMPVFPLHGWLPLAHVEA 236 Query: 240 PTAGSVFLAGIMLKMGGYGCIRF--LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 P+ S+ L+G++LKMG YG IR LP LA+Q + ++ F+SL+ Y +++ Q Sbjct: 237 PSPVSILLSGVLLKMGAYGLIRAAETLPAALLATQDWLAILAFISLL---YGGILAWRQQ 293 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K ++AYSSI+HMG V +GI + +G+ GA+ QM++HGL ++ LF VG++Y R H+R Sbjct: 294 DLKAMVAYSSISHMGVVLLGIATLNVTGLTGAVVQMVAHGLTAATLFLVVGLLYQRTHSR 353 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 D+ YG ++ PR+A + +A +GLPG++GFI E V+++ + +L + Sbjct: 354 DLADYGSVLGKAPRFAFFIAFGLLAAIGLPGSAGFIAELHVLVAGYTRWGGWVLLLGVAM 413 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 ++ A YSL +V+ + + L D++ E +A + G++P P+ Sbjct: 414 LVGAAYSL----RVIGRLCLKGETMDLPDMTRTETLCGGLLAACILVLGLWPAPL 464 >gi|170665336|gb|ACB29208.1| NADH dehydrogenase subunit D [Tarchonanthus camphoratus] Length = 500 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + + ++ +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGFYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLAVDKVEGILSNY 497 >gi|27885273|gb|AAO26117.1| NADH dehydrogenase subunit 4 [Lasianthaea macrocephala] Length = 417 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 234/382 (61%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNKSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSLGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|17228365|ref|NP_484913.1| NAD(P)H-quinone oxidoreductase subunit D4 [Nostoc sp. PCC 7120] gi|17130215|dbj|BAB72827.1| NADH dehydrogenase subunit 4 [Nostoc sp. PCC 7120] Length = 500 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 178/449 (39%), Positives = 262/449 (58%), Gaps = 9/449 (2%) Query: 27 GCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGIS 85 G RS VAL +++ F++S+ + S F G + Q E+ WID SY+LGVDG+S Sbjct: 22 GINGRSSRNVALIFASVTFLWSVILASQFQPGEVNQQFSEFLPWIDTLGLSYNLGVDGLS 81 Query: 86 ILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASL 145 + L+VL LT I SS +S+Q + Y LVL + V GAFL+ D+LLF++F+E L Sbjct: 82 LPLLVLNGLLTGIAIYSSDESLQRP-KFYYSLILVLSAGVSGAFLAQDLLLFFLFYELEL 140 Query: 146 IPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--IIDLYAMSKF 203 IP++++I +WGG+ R YAA KF +YT F I +L + + + W + S + L A S Sbjct: 141 IPLYLLIAIWGGARRGYAATKFLIYTAFSGILILASFLGLVWLSGSGSFALSTLNAQSLP 200 Query: 204 PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFL 263 + + F IK+P+ PFHTWLP+AHV+A T SV LAG++LK+G YG +RF Sbjct: 201 LATQLLLL-AGILVGFGIKMPLVPFHTWLPDAHVEASTPISVLLAGVLLKLGTYGLLRFG 259 Query: 264 LPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMK 323 + L P A Y AP + ++++++Y S ++ QTD+KK++AYSSI HMGYV + + Sbjct: 260 MNLLPAAWNYLAPWLAAWAVVSVLYGSSCAIAQTDMKKMVAYSSIGHMGYVLLAAAAATP 319 Query: 324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH---NMPRYAVVMMVFT 380 GA+ QM+SHGL+S+ LF VGV+Y + +RD+ GL++ MP +M+V Sbjct: 320 LSTLGAVMQMISHGLISALLFLLVGVVYKKAGSRDLDVIRGLLNPERGMPVIGTLMIVGV 379 Query: 381 MANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK 440 MA+ G PG GFI EF++ F +L+ G L+A+Y L L K FG + Sbjct: 380 MASAGTPGMVGFISEFIIFRGSFAVFPVQTLLSMIGTGLTAVYFLILVNKAFFG-RLSAQ 438 Query: 441 VQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 V L + +R + +AVL V FGI P Sbjct: 439 VMNLPRIYWSDRAPAFILAVLIVIFGIQP 467 >gi|170665186|gb|ACB29133.1| NADH dehydrogenase subunit D [Brachyclados caespitosus] Length = 500 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ ++I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIILYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFCPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665314|gb|ACB29197.1| NADH dehydrogenase subunit D [Relhania calycina] Length = 500 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 164/499 (32%), Positives = 273/499 (54%), Gaps = 17/499 (3%) Query: 2 NLPFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 N P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 3 NFPWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFCYHFQLDD 59 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + Sbjct: 60 PLIQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+ Sbjct: 119 LAMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFL 178 Query: 179 LFAIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L ++ + ++ +P +++ +I FF +FA+K+P+ P HTWLP+ H Sbjct: 179 LMGVLGIGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q Sbjct: 239 GEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 299 RNLKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRL 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TV 409 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 359 VYLDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAI 418 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIY 468 + + G++L+ +Y L + R++ +G + D RE + I + + G+Y Sbjct: 419 TFVMAIGMILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMY 478 Query: 469 PVPIRDTFSVPLSSIIENY 487 P + + I+ NY Sbjct: 479 PDFVLSLSVDKVEGILSNY 497 >gi|170665166|gb|ACB29123.1| NADH dehydrogenase subunit D [Adenocaulon chilense] Length = 500 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEILFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLIPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665246|gb|ACB29163.1| NADH dehydrogenase subunit D [Gongylolepis benthamiana] Length = 500 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 275/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I ++ + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVMRWYTICICMLDLLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ + + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDSRLSHFL-MLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ ++ F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMVSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYIFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665204|gb|ACB29142.1| NADH dehydrogenase subunit D [Chuquiraga spinosa] Length = 500 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 166/498 (33%), Positives = 272/498 (54%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 N P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 3 NFPWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDP 60 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W I + R + L Sbjct: 61 LIQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWP-ITRDSRLFHFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S G+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 120 AMYSGQNGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLL 179 Query: 180 FAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + V + + + + +P +++ ++I FF +FA+K P+ P HTWLP+ H Sbjct: 180 MGVLGVGLYGSNEPTLNFETSVNQSYPVALEIILYIGFFIAFAVKSPILPLHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q Sbjct: 240 EAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++KK IAYSSI+HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 300 NLKKRIAYSSISHMGFILIGIASITDMGLNGAILQIISHGFIGAALFFLAGTSYDRIRLV 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 360 YLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAIT 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 420 FVMAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVLGIGMYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 480 DFVLSLSVDKVEGILSNY 497 >gi|170665176|gb|ACB29128.1| NADH dehydrogenase subunit D [Arctotis hirsuta] Length = 500 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 166/497 (33%), Positives = 273/497 (54%), Gaps = 17/497 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 421 VMAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 481 FVLSLSVDKVEGILSNY 497 >gi|115391953|ref|YP_778541.1| NADH dehydrogenase subunit 4 [Jasminum nudiflorum] gi|122164929|sp|Q06R80|NU4C_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|110456274|gb|ABG74679.1| NADH dehydrogenase subunit 4 [Jasminum nudiflorum] Length = 500 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 151/444 (34%), Positives = 260/444 (58%), Gaps = 14/444 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 + P+L+I+ LP +I F + G R F + IS + + + + + F Sbjct: 3 HFPWLTIIVVLPIFAGSLIFFLPH--RGNRVIFWYTICISILELLLTTYAFCYHFQSDDP 60 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q++E Y WID+F + LG+DG+SI ++LT F+T L++ + + + R + L Sbjct: 61 LIQLVEDYKWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDARLFHFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 V+ S IG F D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 120 VMYSGQIGLFSCRDLLLFFLMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLL 179 Query: 180 FAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + + + +++ A +P +++ +I FF +FA+K+P+ P HTWLP+ H Sbjct: 180 MGALGIGLYGSNEPTFNLEILANQSYPVALERIFYIGFFIAFAVKLPIIPLHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG +R + L A F+P + + + IIYA+ S+ Q Sbjct: 240 EAHYSTCMLLAGILLKMGAYGLVRINMELLSHAHSLFSPWLMIVGAMQIIYAASTSLGQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++KK IAYSS++HMG++ IGI S G++GA+ Q++SHG + +ALFF G YDR+ Sbjct: 300 NLKKRIAYSSVSHMGFLIIGIGSITDIGLDGALLQIISHGFIGAALFFLAGTTYDRIRLV 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ MP+ + +F+MA++ LPG SGF+ EF+V + + + Sbjct: 360 YLDEMGGIAIPMPKIFTMFSIFSMASLALPGMSGFVTEFIVFFGLITSPKYLLMAKILIP 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFG 434 + + G++L+ +YSL + R++ +G Sbjct: 420 FVMAIGIILTPIYSLSMSRQMFYG 443 >gi|170665344|gb|ACB29212.1| NADH dehydrogenase subunit D [Warionia saharae] Length = 500 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 165/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP ILF + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFILFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VMGVGLYGSNEPTFNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DQMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665304|gb|ACB29192.1| NADH dehydrogenase subunit D [Platycarphella carlinoides] Length = 500 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 166/497 (33%), Positives = 273/497 (54%), Gaps = 17/497 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLIIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 421 VMAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 481 FVLSLSVDKIEGILSNY 497 >gi|170665282|gb|ACB29181.1| NADH dehydrogenase subunit D [Mutisia retrorsa] Length = 500 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 155/442 (35%), Positives = 255/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMLRQMFYG 443 >gi|11466752|ref|NP_039348.1| NADH dehydrogenase subunit 4 [Marchantia polymorpha] gi|128731|sp|P06263|NU4C_MARPO RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|11723|emb|CAA28134.1| ndh4 [Marchantia polymorpha] Length = 499 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 168/485 (34%), Positives = 274/485 (56%), Gaps = 25/485 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 + P+L+I+ P VI F G + LG+ + F+ +++ + Sbjct: 3 HFPWLTIIVLFPISAGLVIPFLP--STGNKIIRWYTLGVCLLEFLLITYIFCYHYQFNDH 60 Query: 61 SFQMIEYYHWIDYFCSYH--LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q+ E Y+WI F ++H LG+DG SI L++LT F+T L++W + N R + Sbjct: 61 LIQLKEDYNWIS-FINFHWRLGIDGFSIGLILLTGFITTLATLAAWP-VTRNPRLFYFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S IG F S D+LLF+ +E L+P+++++ +WGG R+YAA KF LYT GS+F+ Sbjct: 119 LAMYSGQIGLFASQDILLFFFMWELELLPVYLLLAMWGGKRRLYAATKFILYTAAGSLFI 178 Query: 179 LFAIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L ++M + D + K+P ++ ++++F ++A+K+P+ PFHTWLP+ H Sbjct: 179 LIGGLIMAFYNSNEFTFDFQFLINKKYPLELEIIIYLSFLIAYAVKLPIIPFHTWLPDTH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMG YG IR + L P A +FAP + + I I+YA+L S+ Q Sbjct: 239 GEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSFFAPWLVIVGAIQIVYAALTSLSQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSS++HMG+V IGI S G+ GA+ QM+SHGL+ ++LFF G+ YDR T Sbjct: 299 RNLKRRIAYSSVSHMGFVLIGIGSITNLGLNGAILQMISHGLIGASLFFLAGISYDRTRT 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA--- 413 + GG+ ++MP+ + +MA++ LPG SGFI E ++ + V N N ++ Sbjct: 359 LVLDQMGGIGNSMPKIFTLFTSCSMASLALPGMSGFIAELMIFLGVIDNPNYSSLFKIII 418 Query: 414 ----SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRE----RCMVYPIAVLTVF 464 G++L+ +Y L + R++ +G ++ D RE C+ +PI + Sbjct: 419 IIIQGIGIILTPIYLLSMLRQMFYGYKFSNTLEPYFMDAGPREIFILICLFFPI----IS 474 Query: 465 FGIYP 469 GIYP Sbjct: 475 IGIYP 479 >gi|170665160|gb|ACB29120.1| NADH dehydrogenase subunit D [Acicarpha spathulata] Length = 503 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 163/480 (33%), Positives = 267/480 (55%), Gaps = 15/480 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 N P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 3 NFPWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDP 60 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 61 LIQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 120 AMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLL 179 Query: 180 FAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + V + + + + A +P +++ +I FF +FA+K P+ P HTWLP+ H Sbjct: 180 MGVLGVGLYGSNEPTLNFETLANQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q Sbjct: 240 EAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 300 NLKKRIAYSSVSHMGFILIGIASITDMGLNGAILQIISHGFIGAALFFLAGTSYDRIRLV 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 360 YLDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFFGIITSQKYLLMPKIAII 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 420 FVMAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYP 479 >gi|170665252|gb|ACB29166.1| NADH dehydrogenase subunit D [Gymnarrhena micrantha] Length = 500 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 165/497 (33%), Positives = 273/497 (54%), Gaps = 17/497 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFRYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI ++LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAAPTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 421 VMAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 481 FVLSLSVDKVEGILSNY 497 >gi|170665272|gb|ACB29176.1| NADH dehydrogenase subunit D [Leucomeris spectabilis] Length = 500 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 165/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFIPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LGVDG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGVDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRVNMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYFLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885311|gb|AAO26136.1| NADH dehydrogenase subunit 4 [Oyedaea verbesinoides] Length = 469 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 154/442 (34%), Positives = 256/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + ++ I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVATIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGLSGFVAEVLVFLGIITSQKYLLMAKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 422 MAIGMILTPIYLLSMSRQIFYG 443 >gi|309322275|ref|YP_003934353.1| NADH-plastoquinone oxidoreductase subunit 4 [Monsonia speciosa] gi|197131444|gb|ACH47240.1| NADH-plastoquinone oxidoreductase subunit 4 [Monsonia speciosa] gi|300069368|gb|ADJ66488.1| NADH-plastoquinone oxidoreductase subunit 4 [Monsonia speciosa] Length = 508 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 268/478 (56%), Gaps = 15/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+LSI+ P +I F + G ++ LGI ++ + + + +S F Sbjct: 14 PWLSIIVIFPISAGSLIFFLPHRGNKVTRWY--TLGICSLELLLTAYAFSYHFQLDDPLI 71 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E + WI +F + LG+DG+S+ V+LT F+T L++W + N R + L + Sbjct: 72 QLAEDFKWIRFFQFDWRLGIDGLSLGPVLLTGFITTLATLAAWP-LTRNSRLFYFLMLAM 130 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP++ ++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 131 YSGQIGLFSSRDLLLFFIMWELELIPVYFLLSLWGGRKRLYSATKFLLYTAGSSVFLLIG 190 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + + +++ A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 191 VLGIGLYGSNEPTLNLEISAHQSYPEALEIIFYIGFLIAFAVKSPILPLHTWLPDTHGEA 250 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A +P + + I I+YA+ S+ Q ++ Sbjct: 251 HYSTCMLLAGILLKMGAYGLVRINVELLPHAHSMLSPYLIIVGAIQIVYAASTSLGQRNL 310 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IG+ S +G++GA+ Q++SHG + +ALFF G YDR+ Sbjct: 311 KKRIAYSSVSHMGFIIIGVASITNTGLDGAILQIISHGFIGTALFFLAGTSYDRIRLLSF 370 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS-------VFQNSNTVAVL 412 GG+ +P+ + + +MA++ LPG SGF+ E LV +F + + ++ Sbjct: 371 DEMGGMAIAIPKVFTMFSILSMASLALPGMSGFVAELLVFFGIITSQKFIFMSRILITLI 430 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE ++ I + + GIYP Sbjct: 431 MAVGMILTPIYSLSMLRQMFYGYRLLNTLTPTFFDSGPRELFVLIAILLPVIGIGIYP 488 >gi|170665230|gb|ACB29155.1| NADH dehydrogenase subunit D [Eremanthus erythropappus] Length = 500 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 165/497 (33%), Positives = 273/497 (54%), Gaps = 17/497 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPMALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSLFSPWLMIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 421 VMAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 481 FVLSLSVDKVEGILSNY 497 >gi|262200409|ref|YP_003271617.1| proton-translocating NADH-quinone oxidoreductase, chain M [Gordonia bronchialis DSM 43247] gi|262083756|gb|ACY19724.1| proton-translocating NADH-quinone oxidoreductase, chain M [Gordonia bronchialis DSM 43247] Length = 535 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 171/452 (37%), Positives = 265/452 (58%), Gaps = 32/452 (7%) Query: 55 FDKGRSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKS------- 106 FD + +Q +E + WI F + Y LG+DGI ++LV+LT L P IL+ W+ Sbjct: 53 FDPNGARYQFVEDHSWIPAFGTRYALGLDGIGLVLVLLTAALLPLLILAGWRDADEAGSL 112 Query: 107 ------IQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSE 159 +Q+ Y L +E+MV+ +F++LD+LLFYIFFEA LIPM+ +IG +G G Sbjct: 113 DAAGGRVQKTPHTYFALTLAVEAMVLMSFVALDILLFYIFFEAMLIPMYFLIGGFGNGPR 172 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIV---VMCWEKKTS----------SIIDLYAMSKFP-- 204 R AA KF LY FG + ML A++ V+ ++ +I D A Sbjct: 173 RSAAAVKFLLYNLFGGLIMLAAVIGLYVVTVQQGVGHNGAGTFSLRTISDAVAAGDIDSG 232 Query: 205 FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 + +++ F +FA+K P++PFH+WLP+A V A A +V + ++ K+G + +RF L Sbjct: 233 TGLAKLLFLGFMFAFAVKAPLWPFHSWLPDAAVAATPASAVLMMAVVDKVGTFAMLRFCL 292 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 LFP ASQYFAP+I L++I IIY +++++ QTD+ +LIAY+SI+H G++ +GIF+ Sbjct: 293 QLFPDASQYFAPLICALAVIGIIYGAVLAIGQTDVMRLIAYTSISHFGFIILGIFALTSQ 352 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 G G+ M++HGL ++ALF G + R +R I YGG+ P A +V +A + Sbjct: 353 GQTGSTLYMVNHGLSTAALFLIAGFLVSRRGSRLIADYGGVQKVAPVLAGTFLVAGLATL 412 Query: 385 GLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-- 442 LPG + FI EFLV++ F A++AS +VLSA+Y LW Y++++ G K V+ Sbjct: 413 SLPGLAPFISEFLVLIGTFTRYPIAAIIASGALVLSAIYILWTYQRMMGGPPKLSDVRAS 472 Query: 443 QLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 ++DL+ RE +V P+ L + G+YP P+ D Sbjct: 473 SMRDLAGRELVVVVPLIALLIALGVYPKPLLD 504 >gi|322369195|ref|ZP_08043760.1| NADH dehydrogenase-like complex subunit M [Haladaptatus paucihalophilus DX253] gi|320550927|gb|EFW92576.1| NADH dehydrogenase-like complex subunit M [Haladaptatus paucihalophilus DX253] Length = 517 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 151/441 (34%), Positives = 255/441 (57%), Gaps = 31/441 (7%) Query: 58 GRSSFQMIEYYHWID---YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 G+ +F+ E + W+ Y ++H+G+DGIS+ L+VLT LTP IL++W IQ ++ Sbjct: 57 GKLAFE--ETFKWVTFGPYALNWHVGLDGISMPLLVLTAVLTPLAILAAWTPIQSRQSQF 114 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L +E ++G F +LD +++IF+E L+PM+ +IG+WGG R YAA KFF+YT Sbjct: 115 FGLMLFMEMSLLGVFSALDFFIWFIFWEMVLVPMYFLIGIWGGPRRKYAAIKFFVYTNVA 174 Query: 175 SIFMLFAIVVMCWEKKTS-SIIDLYAMSKF-------------PFSIQYWMWIAFFCSFA 220 S+ M + + + S + +D+ +++ +++ + A F F Sbjct: 175 SLLMFIGFIALVFGLGDSITSLDMPVIAQALNDGQLGSLGGIGAGTLKALAFFAMFIGFG 234 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P+ PFHTWLP+AHV+APT S+ LAG+MLKMG Y +RF + P ++ +A +I Sbjct: 235 VKVPIVPFHTWLPDAHVEAPTPVSIMLAGVMLKMGTYALLRFNFTMLPGVAKDYAFIIAL 294 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 ++++++IY +L+++ Q+D+K+++AYSS++ MGYV +G+ + GV GA FQM++HGL+S Sbjct: 295 VAVVSVIYGALLALAQSDLKRIVAYSSVSSMGYVILGLVAFNMYGVGGATFQMVAHGLIS 354 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 +F VGVIY+ HTR + GL MP V + MGLP +GF EF + + Sbjct: 355 GLMFMAVGVIYNTTHTRMVSDMSGLADKMPITVAVFVAGAFGYMGLPLMAGFAAEFFIFV 414 Query: 401 SVFQN---------SNTVAVL---ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 F + +N +A+ A FG+V+ A Y L+ ++ +FG + E ++ S Sbjct: 415 GAFHSTVLAGTVAGTNGLALFTGAAMFGIVIVAGYLLFAMQRTLFGPFRLETDYEVGRAS 474 Query: 449 LRERCMVYPIAVLTVFFGIYP 469 + + + +L + G+ P Sbjct: 475 FHDVAPLVVLILLVILLGVQP 495 >gi|170665250|gb|ACB29165.1| NADH dehydrogenase subunit D [Gundelia tournefortii] Length = 500 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP ILF + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFILFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI ++LT F+T L++W + + R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPILLTGFITTLATLAAWP-VTRDCRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLIIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DQMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885271|gb|AAO26116.1| NADH dehydrogenase subunit 4 [Lagophylla ramosissima] Length = 417 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYILLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETLVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFI 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGIILTPIYLLSMLRQMFYG 391 >gi|170665288|gb|ACB29184.1| NADH dehydrogenase subunit D [Oldenburgia grandis] gi|170665328|gb|ACB29204.1| NADH dehydrogenase subunit D [Stifftia chrysantha] Length = 500 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|229490929|ref|ZP_04384764.1| NADH-quinone oxidoreductase, m subunit [Rhodococcus erythropolis SK121] gi|229322319|gb|EEN88105.1| NADH-quinone oxidoreductase, m subunit [Rhodococcus erythropolis SK121] Length = 524 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 168/467 (35%), Positives = 269/467 (57%), Gaps = 23/467 (4%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF-- 111 FD+G FQ +E + WI F SY LG+DGI+++LV+LT L P +++ W + + Sbjct: 56 FDRGGEQFQFVESHSWIPAFGTSYTLGLDGIALVLVLLTAVLVPLLLIAGWNDVPADPAS 115 Query: 112 -----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYK 166 Y LV+ESMV+ +F +LD+LLFYIFFEA LIPM+ +IG +GG R AA K Sbjct: 116 PKRMPHTYFALILVVESMVMISFSALDILLFYIFFEAMLIPMYFLIGGFGGVGRSRAAVK 175 Query: 167 FFLYTFFGSIFMLFAI----VVMCWEKK--TSSIIDLYAMSKFPFS--------IQYWMW 212 F LY G + ML A+ VV ++ S D A++ S + ++ Sbjct: 176 FLLYNLLGGLVMLAAVIGLYVVTTRDESPFASGTFDFRAIASAANSGELGVGPGVLNALF 235 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 + F +FA+K P++P H+WLP++ V++ + +V + ++ K+G + IR+ L LFP +S Sbjct: 236 LGFMFAFAVKAPLWPLHSWLPDSAVESTPSTAVLMMAVVDKVGTFAMIRYCLQLFPESSS 295 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 FAP I L++I I+Y +++++ QTD+ +LIAY+SI+H G++ +GIF+ G+ Sbjct: 296 TFAPWIITLAVIGIVYGAILAIAQTDVMRLIAYTSISHFGFIILGIFAMTSQSQAGSALY 355 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 M++HG+ ++ALF G + + TR I AYGG+ P A +V +A + LPG + F Sbjct: 356 MVNHGVSTAALFLIAGFLVSQRGTRSIAAYGGVQKVAPVLAGTFLVAGLATLSLPGLAPF 415 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 I EFLV++ + + A+ A+ +VLSA+Y LWLY++++ G K E ++DL+ RE Sbjct: 416 ISEFLVLIGTYSRYHVAAIAATAALVLSAIYILWLYQRMMGGPVK-EGQGTIRDLARREL 474 Query: 453 CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSVKG 499 +V P+ L + GIYP P D + +S + + +D G Sbjct: 475 VVVAPLIALLLLLGIYPKPALDVITPAVSHTVVDEAPTPLVADHEGG 521 >gi|27885269|gb|AAO26115.1| NADH dehydrogenase subunit 4 [Kingianthus paradoxus] Length = 417 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 144/382 (37%), Positives = 234/382 (61%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHGL+ +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGLMGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|94502546|ref|YP_588173.1| NADH dehydrogenase subunit 4 [Helianthus annuus] gi|122237663|sp|Q1KXQ3|NU4C_HELAN RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|88656950|gb|ABD47201.1| NADH-plastoquinone oxidoreductase subunit 4 [Helianthus annuus] Length = 500 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 162/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+S+ V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSLGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I F +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFLIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMVVGTIQIIYAASTSLGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMSRQIFYGYKLFNTPNSYVFDSGPRELFVSISIFIPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665242|gb|ACB29161.1| NADH dehydrogenase subunit D [Gochnatia hypoleuca] Length = 500 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNRSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|114804313|ref|YP_762310.1| NADH-plastoquinone oxidoreductase subunit 4 [Morus indica] gi|122166761|sp|Q09WW8|NU4C_MORIN RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|78100365|gb|ABB21006.1| NADH-plastoquinone oxidoreductase subunit 4 [Morus indica] Length = 500 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 264/478 (55%), Gaps = 15/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP F+ILF + G ++ L I I + + + + F Sbjct: 5 PWLTIIIVLPIFAGFLILFLPHRGNKVIRWY--TLCICIIELLLTTYAFGYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID+ S+ LG+DGISI ++LT F+T L++ +E+ R + L + Sbjct: 63 QLAEDYKWIDFLDFSWRLGIDGISIGPILLTGFITTLATLAARPVTRES-RVFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S ++LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S F+L Sbjct: 122 YSGQIGPFSSQNLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSAFLLVG 181 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 I+ +C ++ A +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 ILGICLSASNEPTLNFETSANQSYPVALEMLFYIGFFIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IG+ S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGLGSINDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---TVAVLASF- 415 GG+ +P+ + +MA++ LPG SGF+ E ++ + + +L +F Sbjct: 362 DEMGGMAITIPKIFTTFSILSMASLALPGMSGFVAELILFFGILTSQKYLLMTKILITFV 421 Query: 416 ---GVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFTATNSYFVDSGPREFFVSISILLPVIAIGIYP 479 >gi|170665266|gb|ACB29173.1| NADH dehydrogenase subunit D [Ianthopappus corymbosus] Length = 500 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 155/442 (35%), Positives = 255/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LGVDG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGVDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMSRQMFYG 443 >gi|170665174|gb|ACB29127.1| NADH dehydrogenase subunit D [Aphyllocladus spartioides] Length = 500 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNCYVFDSGPRELFVSISIFIPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|156598272|gb|ABU85398.1| NADH-plastoquinone oxidoreductase subunit 4 [Ginkgo biloba] Length = 501 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 159/424 (37%), Positives = 248/424 (58%), Gaps = 23/424 (5%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y+WID + LG+DG+S+ L+ LT F+T LS+W + N R L + Sbjct: 63 QLEEDYNWIDLIDFHWRLGIDGLSVGLITLTGFVTTLATLSAWP-VTRNPRLLHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S G+F S D+LLF++ +E LIP+++++ +WGG R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQAGSFASRDILLFFLMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFILMV 181 Query: 182 IVVM-CWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 M + +DL ++ +P +++ + FF ++AIK+P+FP HTWLP+ H + Sbjct: 182 ASSMGLYGSSDGPTLDLQTLANKYYPVALEIVFYSGFFIAYAIKLPIFPLHTWLPDTHGE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI LKMGGYG IR + LF F+P + + IIYA+L S+ Q + Sbjct: 242 AHYSTCMLLAGIPLKMGGYGLIRINMELFSHTHSLFSPWSVIIGAVQIIYAALTSLGQRN 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 K+ IAYSS++HMG+V IGI S +G+ GA+ QM+SHGL+ +AL F G YDR+ T Sbjct: 302 SKRRIAYSSVSHMGFVIIGIGSMTDTGLNGAILQMISHGLIGAALSFSAGTSYDRIRTPF 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV---IMSVFQNSNT----VAV 411 + GG+ MP+ + + F+MA++ LPG SG + E +V IM+ + S+T + Sbjct: 362 LDKMGGMAIPMPKISTMFSSFSMASLALPGMSGSVAESMVFWGIMTSHKYSSTFKIVITA 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRE----RCMVYPIAVLTVFF 465 +A+ G++L+ + L + R++ +G K V + D RE C+ P+ V+ Sbjct: 422 IAAIGMILTPTHLLSMLRRMFYGY-KLLNVPKYYFTDSGPREIFILICLFIPVVVI---- 476 Query: 466 GIYP 469 G+YP Sbjct: 477 GLYP 480 >gi|146298994|ref|YP_001193585.1| proton-translocating NADH-quinone oxidoreductase, chain M [Flavobacterium johnsoniae UW101] gi|146153412|gb|ABQ04266.1| NADH dehydrogenase subunit M [Flavobacterium johnsoniae UW101] Length = 483 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 155/413 (37%), Positives = 247/413 (59%), Gaps = 7/413 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 S+ L DG+++ +++LTT LTP I SS+ + +N + + L + + G FL+ D L Sbjct: 66 SFALNADGLALAMLLLTTALTPIIIFSSFGNEYKNAKAFYALILFMAFAMTGTFLAADGL 125 Query: 136 LFYIFFEASLIPMFVIIGVWG---GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 L+YIF+E +LIP++ I +WG ER A KFF+YT GS+FML A + + + + Sbjct: 126 LYYIFWELALIPIYFIALIWGNGDAEERRKAVVKFFIYTLAGSLFMLTAFIYLYQKAGSF 185 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I DLY + + Q+W+++AFF ++AIKIP+ PFHTW N + +APT G++ L+GIML Sbjct: 186 LIEDLYKV-QLSACEQFWIFLAFFLAYAIKIPIIPFHTWQANVYQKAPTVGTMLLSGIML 244 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 KMG Y IR+ LP+ A+ F + L + +IY S+V++ Q D+KKL+AYSS+AH+G Sbjct: 245 KMGLYSVIRWQLPIAADAAIEFKNIFIALGIAGVIYGSIVALRQKDLKKLLAYSSLAHVG 304 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 + G ++ G GA+ QM++HG V LF+ +IY R TR+I GG+ P++ Sbjct: 305 LIAAGAYTLTLDGFRGAVLQMIAHGFVVVGLFYAAEIIYRRFETRNISELGGIRTQSPKF 364 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + ++ +A++ LP T F+GEF V+ S+ Q + AVL ++L A Y L +++ V+ Sbjct: 365 TSMFLILVLASVALPTTFNFVGEFTVLYSLSQINIWFAVLGGTTIILGAYYMLKMFQNVM 424 Query: 433 FGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 G + + D+S+ E + I + +FFG YP PI D + L +I+ Sbjct: 425 LGETNS---KIFADVSINEGISMAAIIAVLIFFGFYPKPITDLITPSLETILS 474 >gi|323146391|gb|ADX32720.1| NADH dehydrogenase subunit D [Eupatorium hyssopifolium] Length = 500 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R L I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTLCICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYFLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665194|gb|ACB29137.1| NADH dehydrogenase subunit D [Centratherum punctatum] Length = 500 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 155/443 (34%), Positives = 255/443 (57%), Gaps = 16/443 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPMALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSLFSPWLMIVGTIQIIYAASTSSGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFG 434 + + G++L+ +YSL + R++ +G Sbjct: 421 VMAIGMILTPIYSLSMSRQMFYG 443 >gi|27885287|gb|AAO26124.1| NADH dehydrogenase subunit 4 [Madia sativa] Length = 417 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETLVNQSYPVALEILFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFI 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGIILTPIYLLSMLRQMFYG 391 >gi|27885195|gb|AAO26078.1| NADH dehydrogenase subunit 4 [Coreopsis petrophiloides] Length = 469 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 154/442 (34%), Positives = 256/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +ILF + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLILFLPH--KGNRVIKWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPAALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLAYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSRKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 422 MAIGMILTPIYLLSMSRQMFYG 443 >gi|297616451|ref|YP_003701610.1| proton-translocating NADH-quinone oxidoreductase, chain M [Syntrophothermus lipocalidus DSM 12680] gi|297144288|gb|ADI01045.1| proton-translocating NADH-quinone oxidoreductase, chain M [Syntrophothermus lipocalidus DSM 12680] Length = 505 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 263/462 (56%), Gaps = 15/462 (3%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTF 94 +A + ++ SL+VW +D+ FQ +E+ WI D SY LGVDGIS+ ++VLTT Sbjct: 35 IAATTTLVSMALSLWVWGTYDRSTGGFQFVEHVPWIPDLGVSYSLGVDGISVPMLVLTTL 94 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 + + +SW+ + +E+ FL+L + V+G F++ D+ +F++F+E +IP++++I + Sbjct: 95 IGFSAVFASWR-VAHRVKEFFSLFLLLLTGVMGTFVTTDLFIFFLFYEVVVIPIYLLIIM 153 Query: 155 WGGSERI---YAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS-------KFP 204 +G S+R+ YA K +Y GS F+L ++ + K+ I+ +M FP Sbjct: 154 YGSSKRVTKEYAGMKLTIYLLVGSAFLLVGMISLF--VKSGEILGYPSMDVLTLAALDFP 211 Query: 205 FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 Q +++ F + MFPFH W P+ + APTA S+ AG++ K+GGY IRF + Sbjct: 212 VGFQVFVFALMAFGFGTLLSMFPFHAWSPDGYAGAPTAVSMVHAGVLKKIGGYALIRFGI 271 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 L P + Y AP+I L++ ++YA+ + + Q D+K ++ YSS++HMGYV +G+ + Sbjct: 272 WLLPQGAAYVAPLIAVLAIGNVVYAAFICLAQKDLKYIVGYSSVSHMGYVLLGLAALNLV 331 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 V GA+ M HG++++ F VG +YD+ HTR++ +GGL H MPR A M+ +A++ Sbjct: 332 SVNGAVMMMFGHGVMAALFFAMVGNLYDKSHTRNVDDFGGLAHRMPRLAFGFMLAGLASL 391 Query: 385 GLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL 444 GLPG FIGEF + + F VLA G++L+ALY L ++FG + E+ L Sbjct: 392 GLPGLVNFIGEFTIFVGSFGVYRVFTVLAVSGIILTALYVLRALGNILFGPLR-EEWSHL 450 Query: 445 KDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 +DL E + + + G+ P + D ++ + I+ + Sbjct: 451 EDLKGVEMVPLVVLGAAIIVGGLAPFSLMDIINLGVGDIVAH 492 >gi|197131446|gb|ACH47241.1| NADH-plastoquinone oxidoreductase subunit 4 [Sarcocaulon vanderietiae] Length = 509 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 266/478 (55%), Gaps = 15/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+LSI+ P F+I F + G ++ L I ++ + + + +S F Sbjct: 14 PWLSIIVIFPISAGFLIFFLPHRGNKVTRWY--TLCICSLELLLTAYAFSYHFQLDDPLI 71 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI +F + LG+DG+S+ V+LT F+T L++W + N R + L + Sbjct: 72 QLVEDYKWIRFFQFDWRLGIDGLSLGPVLLTGFITTLATLAAWP-LTRNSRLFYFLMLAM 130 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP++ ++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 131 YSGQIGPFSSRDLLLFFIMWELELIPVYFLLSLWGGRKRLYSATKFLLYTAGSSVFLLIG 190 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + + +++ A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 191 VLGIGLYGSNEPTLNLEISAHQSYPAALEIIFYIGFLIAFAVKSPILPLHTWLPDTHGEA 250 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A +P + + I I+YA+ S+ Q ++ Sbjct: 251 HYSTCMLLAGILLKMGAYGLVRINVELLPHAHSMLSPYLIIVGAIQIVYAASTSLGQRNL 310 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G++GA+ Q++SHG + +ALFF G YDR+ Sbjct: 311 KKRIAYSSVSHMGFIIIGIASITNTGLDGAILQIISHGFIGAALFFLAGTSYDRIRLLSF 370 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 371 DEMGGMAIALPKVFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMSKILITFI 430 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 431 MAVGMILTPIYSLSMLRQMFYGYRLFNTLTPTFFDSGPRELFVSISILLPVIGIGIYP 488 >gi|83956267|ref|ZP_00964708.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Sulfitobacter sp. NAS-14.1] gi|83839488|gb|EAP78669.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Sulfitobacter sp. NAS-14.1] Length = 469 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 172/457 (37%), Positives = 267/457 (58%), Gaps = 23/457 (5%) Query: 41 STINFIFSLFVWSVFDKGR--SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTP 97 + I F+ +L +WS +G F IE WI +Y LG+DG+S+ LV+LT+ L Sbjct: 20 TGIVFMLTLVIWS---RGTIAGGFAQIEELAWIPAIGAAYRLGLDGLSLPLVLLTSLLFF 76 Query: 98 FCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG 157 + S + I + Y++ L+LE+ +G F++LD LLFY+FFE SL+ M+ +I WG Sbjct: 77 LSAIYSAR-ISDRAPSYVVLMLMLETAALGTFMALDGLLFYVFFEVSLVGMYFMIAGWGY 135 Query: 158 SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI---IDLYAMSKFPFSIQYWMWIA 214 +R AA FF+YT GS+ +L AI+ + T + ID+ ++ + IA Sbjct: 136 EDRQRAALMFFIYTLLGSLPLLLAIIGLYLSSGTFDMRVWIDMPPLTGIAAMLAL---IA 192 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 +FA+KIP FP HTWLP AHVQAPTAGSV LAG+MLK G YG +RF L + P A Sbjct: 193 MLFTFAVKIPAFPVHTWLPAAHVQAPTAGSVILAGVMLKFGTYGLVRFALQMTPEAFAQA 252 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS--------GV 326 VI + +++ +Y + ++ Q+D+KK+IAY+SI HMGYV +G+ + + Sbjct: 253 GQVILAVGVVSALYGAFAALAQSDLKKMIAYTSINHMGYVVMGVAVAALTVDLRIRTIAL 312 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 +GA QM+SHGLV+ ALFF +G++ DR H+RD+ +GGL+ +P ++ A++GL Sbjct: 313 DGATLQMVSHGLVTGALFFLLGMLQDRAHSRDMSEFGGLLGRVPWLGWSFILMAFASLGL 372 Query: 387 PGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD 446 PG + F EF V ++ N+ A++A +V++A L V G S+ EK +++D Sbjct: 373 PGLAHFPAEFQVFLATL-NTAPWAIIAILAIVVTAGLYLRAIAAVFLG-SENEKWLEMRD 430 Query: 447 LSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 L RE+ ++ P+ +LTV G+ P + D ++S+ Sbjct: 431 LDRREKLVIVPLLILTVLVGVAPGWLIDMIHTTMASL 467 >gi|170665340|gb|ACB29210.1| NADH dehydrogenase subunit D [Trixis divaricata] Length = 500 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 162/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFFPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI LV+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGLVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS F+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSTFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ ++I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSVNQSYPVALEIIIYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTMQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMSKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNIPNSYVFDFGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885399|gb|AAO26180.1| NADH dehydrogenase subunit 4 [Zinnia juniperifolia] Length = 417 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ + +P ++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETLVNQSYPVGLEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|27885297|gb|AAO26129.1| NADH dehydrogenase subunit 4 [Monactis pallatangensis] Length = 417 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFFMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVALYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|152992446|ref|YP_001358167.1| NADH-quinone oxidoreductase, chain M [Sulfurovum sp. NBC37-1] gi|151424307|dbj|BAF71810.1| NADH-quinone oxidoreductase, chain M [Sulfurovum sp. NBC37-1] Length = 479 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 147/417 (35%), Positives = 247/417 (59%), Gaps = 11/417 (2%) Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLS 131 D+ S L VD +S+++++LT+ L LSSW ++ R Y ++ + G F+S Sbjct: 68 DFILS--LQVDRLSVVMLILTSALLILVTLSSWT--MKDPRNYFSLLVLFSGPIFGVFMS 123 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT 191 ++L F+IF+E +L+PMF ++G+WG RIYAA KFFLYT S+ +L A ++ K Sbjct: 124 TNLLWFFIFWELTLVPMFFLVGIWGAEGRIYAAVKFFLYTHVASMLILLAFFLIY---KE 180 Query: 192 SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + I D+ + + S +W F FA+K+P+FPFHTWLP+AHVQAP S LAG++ Sbjct: 181 TGIFDMTMVKEAMLSTPVLVWWLLFIGFAVKMPIFPFHTWLPDAHVQAPAPVSALLAGVL 240 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LKMG Y IR ++ + P S++FA VI L L+ + YA +++ +T +KK++AYSSI+HM Sbjct: 241 LKMGAYAMIRMVVLMLPEQSEHFAWVILVLGLVTLFYAGFMALYETHLKKMVAYSSISHM 300 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G VT+ I + +G+ A+++M+ H L+ S LF G ++ R + + GGL+ P Sbjct: 301 GLVTVAIATLSYAGLSAALYEMIGHALIISPLFLIAGFLHSRTGSWQMKDMGGLMQKAPY 360 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + + ++ +A +GLPGT GFIGE ++++ + ++ + G ++ A Y +W +R+V Sbjct: 361 LSAIFVLAGLAALGLPGTMGFIGELTILIAAIEQYGIGLIVVALGSMIGAGYIIWTFRRV 420 Query: 432 VFGVSKCEKVQQLKDLSLR--ERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 V+G K V++ D + E + A+ + FG++P + DT + S ++ + Sbjct: 421 VYG-EKSALVEK-SDFRMNRVEFAALIIFALGIIGFGLFPSVLFDTINAAFSMLLTS 475 >gi|27885277|gb|AAO26119.1| NADH dehydrogenase subunit 4 [Monolopia congdonii] Length = 417 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 234/382 (61%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + A +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSANQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSLFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMLRQMFYG 391 >gi|170665342|gb|ACB29211.1| NADH dehydrogenase subunit D [Ursinia speciosa] Length = 500 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 162/496 (32%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+++ Y WI++F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 63 QLVDDYKWINFFDFRWKLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ ++I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSVNQSYPVALEIILYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + V + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAVTFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGIILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIAIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEDILSNY 497 >gi|27885343|gb|AAO26152.1| NADH dehydrogenase subunit 4 [Riencourtia oblongifolia] Length = 417 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKTFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMAKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|156742072|ref|YP_001432201.1| proton-translocating NADH-quinone oxidoreductase subunit M [Roseiflexus castenholzii DSM 13941] gi|156233400|gb|ABU58183.1| proton-translocating NADH-quinone oxidoreductase, chain M [Roseiflexus castenholzii DSM 13941] Length = 566 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 186/561 (33%), Positives = 295/561 (52%), Gaps = 78/561 (13%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD-----KG 58 P+L+++ P +G+ + + L R+ A STI ++ VW FD G Sbjct: 10 PWLTLLILSPLIGLALTGLAGALRLDDRTVKIGATAWSTIPLALAIVVWVGFDPNATADG 69 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + Q +E W+ Y +GVDGIS+ LV+LT + P +L+S+ I + Y+ Sbjct: 70 QGVVQFVEKIPWVQAIRVDYFVGVDGISMPLVILTAAMAPVAMLASF-GITGRVKLYIAL 128 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG---GSE------RIYAAYKFF 168 +LE+ ++G FL+L+ F+IF+E SL+P + +I WG G++ R AA KFF Sbjct: 129 MFLLEAAMLGYFLALNFFFFFIFWEFSLVPAYFLIQGWGRRHGADADPEQRRRDAALKFF 188 Query: 169 LYTFFGSIFML-----------------FAIVVMCW-------EKKTSSIIDLY------ 198 +YT GSI ML F ++ + E+ ++L Sbjct: 189 VYTMAGSIGMLLLFQFFYVATAAAGIPTFDLITLARLGQGLTVERAALDPVNLTLREIIF 248 Query: 199 ----------AMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + ++P SI +W A F +FAIK+ ++PFHTWLP+A+ +APTA S+ Sbjct: 249 NYVEQLGIAAVLGRYPLLYTSIAFW---AIFIAFAIKLGIWPFHTWLPDAYSEAPTAASI 305 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT--DIKKLI 303 LA +M KMG YG +R +LP P A+QYF P I L+LI ++ + ++ Q D+K+LI Sbjct: 306 LLAAVMSKMGAYGMLRLMLPFVPDAAQYFGPAIGALALIGVVAGAFGALGQVGGDLKRLI 365 Query: 304 AYSSIAHMGYVTIGIFSGMKSG----------VEGAMFQMLSHGLVSSALFFCVGVIYDR 353 AY+SI HMGYV + I + G + GA+FQM++HGL + ALF G++ +R Sbjct: 366 AYTSINHMGYVGLAIAAAATVGSADSATRATAINGALFQMVAHGLSTGALFLLAGMLAER 425 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 + ++ GL MP +A M V T AN+GLPG +GF+GEF + V+ + A+LA Sbjct: 426 CGSDEMGTLAGLRTTMPVFAGAMGVATFANLGLPGLAGFVGEFFIFRGVWASLPLFALLA 485 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL--RERCMVYPIAVLTVFFGIYPVP 471 + G+V++AL L +Y ++ G K + + D+ L RE V P+ + + G+YP P Sbjct: 486 TIGLVVTALALLRMYGQLFHG--KTNERSAMPDMRLAGREFLAVAPLLIALLILGVYPAP 543 Query: 472 IRDTFSVPLSSIIENYTLKTG 492 I D + ++++E +T G Sbjct: 544 IMDLSNRTATALVEVFTRVVG 564 >gi|170665278|gb|ACB29179.1| NADH dehydrogenase subunit D [Lycoseris crocata] Length = 500 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFSGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSAPKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNQPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE ++ I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVLISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665276|gb|ACB29178.1| NADH dehydrogenase subunit D [Lophopappus cuneatus] gi|170665310|gb|ACB29195.1| NADH dehydrogenase subunit D [Proustia cuneifolia] Length = 500 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ ++I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGFNEPTLNFETSVNQSYPVALEIIIYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665218|gb|ACB29149.1| NADH dehydrogenase subunit D [Dimorphotheca sinuata] Length = 500 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 162/495 (32%), Positives = 274/495 (55%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ + + + + F + F+ Q Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPHKGNRVIRWYTICICLLELLLTTYAFCYH-FELDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 64 XVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLXMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V + + + + +P +++ ++I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 183 LGVGLYGSNEPTLNFETSVNQSYPVALEIILYIGFFIAFAVKLPILPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSMFSPWLMIVGTIQIIYAASTSPGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ +GI S +G+ GAM Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFILVGIASITDTGLNGAMLQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 363 EMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSPKYLLMPKIAITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +Y L + R++ +G + D RE + I + + G+YP + Sbjct: 423 AIGMILTPIYLLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + I+ NY Sbjct: 483 LSLSVDKVEGILSNY 497 >gi|323146397|gb|ADX32723.1| NADH dehydrogenase subunit D [Hartwrightia floridana] Length = 500 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFRYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYFLIPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885325|gb|AAO26143.1| NADH dehydrogenase subunit 4 [Phaneroglossa bolusii] Length = 469 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 154/444 (34%), Positives = 256/444 (57%), Gaps = 14/444 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 N P+L+I+ LP +I F + G R+ + I + + + + + F Sbjct: 3 NFPWLTIIVVLPIFAGSLIFFLPH--KGNRTIRWYTICICMLELLLTTYAFCYHFQFDDP 60 Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q++E Y WI +F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 61 LIQLVEDYKWISFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 120 AMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSIFLL 179 Query: 180 FAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H Sbjct: 180 MGVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q Sbjct: 240 EAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 300 NLKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLV 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 360 YLDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAIT 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFG 434 + + G++L+ +Y L + R++ +G Sbjct: 420 FVMAIGMILTPIYLLSMSRQMFYG 443 >gi|27885368|gb|AAO26165.1| NADH dehydrogenase subunit 4 [Tagetes erecta] Length = 417 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WID+F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWIDFFDFRWKLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + I IIYA+L S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHAIFSPWLMIEGTIQIIYAALTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASLTDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|27885275|gb|AAO26118.1| NADH dehydrogenase subunit 4 [Layia heterotricha] Length = 417 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETLVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFI 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGIILTPIYLLSMLRQMFYG 391 >gi|170665164|gb|ACB29122.1| NADH dehydrogenase subunit D [Richterago angustifolia] gi|170665316|gb|ACB29198.1| NADH dehydrogenase subunit D [Richterago amplexifolia] Length = 500 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNRSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VFSLSVDKVEGILSNY 497 >gi|170665184|gb|ACB29132.1| NADH dehydrogenase subunit D [Berkheya purpurea] Length = 500 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 267/477 (55%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP I F + G ++ + + + + I F + F Q Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPHKGNRVIRWYTICICMLELLLITYAFCYH-FQLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 363 EMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 423 AIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYP 479 >gi|170665334|gb|ACB29207.1| NADH dehydrogenase subunit D [Syncarpha vestita] Length = 500 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 156/445 (35%), Positives = 255/445 (57%), Gaps = 16/445 (3%) Query: 2 NLPFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 N P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 3 NFPWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFCYHFQLDD 59 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + Sbjct: 60 PLVQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+ Sbjct: 119 LAMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFL 178 Query: 179 LFAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H Sbjct: 179 LMGVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q Sbjct: 239 GEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 299 RNLKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRL 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TV 409 + GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + Sbjct: 359 VYLDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAI 418 Query: 410 AVLASFGVVLSALYSLWLYRKVVFG 434 + + G++L+ +Y L + R++ +G Sbjct: 419 TFVMAIGMILTPIYLLSMLRQMFYG 443 >gi|170665260|gb|ACB29170.1| NADH dehydrogenase subunit D [Hoplophyllum spinosum] Length = 500 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 165/497 (33%), Positives = 273/497 (54%), Gaps = 17/497 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 421 VMAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 481 FVLSLSVDKVEGILSNY 497 >gi|320107671|ref|YP_004183261.1| proton-translocating NADH-quinone oxidoreductase subunit M [Terriglobus saanensis SP1PR4] gi|319926192|gb|ADV83267.1| proton-translocating NADH-quinone oxidoreductase, chain M [Terriglobus saanensis SP1PR4] Length = 530 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 164/483 (33%), Positives = 271/483 (56%), Gaps = 30/483 (6%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV---WSVFDKGRSSF 62 LS++ P G ++ G +++ VAL ++ I F +L + W G+ +F Sbjct: 9 LSLILITPLAGAVLLAILPDRGRLQQT---VALIVTLITFGLTLHLPSHWHALAAGQFAF 65 Query: 63 QMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 + WI YHLGVDG+S+ LVVL+ L P +L+SW +I + + FL+ Sbjct: 66 D--QNLPWIASPAIRYHLGVDGLSMWLVVLSGLLAPLGVLASWNTISSRKKLFYALFLLQ 123 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGSIFMLF 180 + + G F+SLD+ L+Y F+E +L+PM ++I +G +E R +A K+FLY F S +L Sbjct: 124 QVAMFGVFVSLDLFLYYAFWELALVPMTILIATFGRTEKRKRSAIKYFLYAFIPSAILLV 183 Query: 181 AIV---VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA---FFCSFAIKIPMFPFHTWLPN 234 I+ + ++I + A + P S Q +W+A F +FA+K+P+FP H WL + Sbjct: 184 GILWLYTVTGTMDVPTLIHMAAAHQIPGSTQA-LWLASLAFLIAFAVKVPIFPLHGWLAD 242 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 A APTA + LAG K+G Y +RF +FP S AP++ L I I+Y SL++M Sbjct: 243 AISDAPTAAVMVLAG---KLGLYSILRFSFGIFPEQSHRIAPLLIVLGAIGIVYGSLIAM 299 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 + D+K+L +YS++AH+ ++T+GIFS SG++G M+Q+L+HG+ A+F +G +Y+R Sbjct: 300 LSNDLKRLASYSTVAHLSFITLGIFSFTASGLDGGMYQILNHGISGGAMFLLMGFLYERY 359 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV----- 409 T D+ GG+ +P + ++ +++N GLP + F+GEFL++ Q+ T Sbjct: 360 GTYDMRQLGGIAQTLPWMVTLFVITSLSNAGLPMLNSFVGEFLILSGSAQSVLTQHAMLW 419 Query: 410 AVLASFGVVLSALYSLWLYRKV---VFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVF 464 +A+ GV+LSA Y L + ++ FG E L+ D++ RE V+P+ +L V Sbjct: 420 TTIATTGVILSAAYLLTMIQRTFYGSFGTRSGELTGALRPLDITAREHLAVWPLVLLFVV 479 Query: 465 FGI 467 G+ Sbjct: 480 MGL 482 >gi|27885257|gb|AAO26109.1| NADH dehydrogenase subunit 4 [Hymenoxys lemmonii] Length = 417 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + D +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSDQPTLNFDTSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|27885385|gb|AAO26173.1| NADH dehydrogenase subunit 4 [Verbesina jacksonii] Length = 417 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMLRQIFYG 391 >gi|27885166|gb|AAO26063.1| NADH dehydrogenase subunit 4 [Amblyopappus pusillus] Length = 417 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 234/382 (61%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F S + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDSRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|170665296|gb|ACB29188.1| NADH dehydrogenase subunit D [Pachylaena atriplicifolia] Length = 500 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 271/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W + + R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWP-VTRDCRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DKMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIAIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885299|gb|AAO26130.1| NADH dehydrogenase subunit 4 [Monolopia gracilens] Length = 417 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 234/382 (61%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + A +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSANQSYPVALEVIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMLRQMFYG 391 >gi|27885241|gb|AAO26101.1| NADH dehydrogenase subunit 4 [Galinsoga quadriradiata] Length = 469 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 154/443 (34%), Positives = 256/443 (57%), Gaps = 16/443 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPHK---GNRVIRWYTICICMLELLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMVVGTIQIIYAASTSLGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFG 434 + + G++L+ +Y L + R++ +G Sbjct: 421 VMAIGMILTPIYLLSMSRQMFYG 443 >gi|27885313|gb|AAO26137.1| NADH dehydrogenase subunit 4 [Palafoxia arida] Length = 469 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 153/442 (34%), Positives = 256/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPALNFETSVNQSYPVALEIIFYIGFFLAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + LFP A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELFPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E ++ + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIIFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 422 MAIGMILTPIYLLSMSRQMFYG 443 >gi|170665240|gb|ACB29160.1| NADH dehydrogenase subunit D [Gamochaeta pensylvanica] Length = 500 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 165/499 (33%), Positives = 273/499 (54%), Gaps = 17/499 (3%) Query: 2 NLPFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 N P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 3 NFPWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFCYHFQLDD 59 Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q+++ Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + Sbjct: 60 PLVQLVDDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+ Sbjct: 119 LAMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFL 178 Query: 179 LFAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H Sbjct: 179 LMGVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q Sbjct: 239 GEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSSGQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 299 RNLKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRL 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TV 409 + GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + Sbjct: 359 VYLDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAI 418 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIY 468 + + G++L+ +Y L + R++ +G + D RE + I + + G+Y Sbjct: 419 TFVMAIGMILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMY 478 Query: 469 PVPIRDTFSVPLSSIIENY 487 P + + I+ NY Sbjct: 479 PDFVLSLSVDKVEGILSNY 497 >gi|126437063|ref|YP_001072754.1| proton-translocating NADH-quinone oxidoreductase, chain M [Mycobacterium sp. JLS] gi|126236863|gb|ABO00264.1| NADH dehydrogenase subunit M [Mycobacterium sp. JLS] Length = 496 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 161/454 (35%), Positives = 255/454 (56%), Gaps = 21/454 (4%) Query: 38 LGISTINFIFSLFVWSVFDK-GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 + ++ I+ + VW+ +D G + E WI SYH+GVDG+S+ LVV+T + Sbjct: 32 VAVTGIDVALIVMVWARYDAPGINELAFEEKVSWIPGVNSSYHIGVDGLSLPLVVMTAVI 91 Query: 96 TPFCILSSWKSIQENFREYMIA-FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 C + ++ E+ + A FL L+S+ +G F++ D++LF++FF+ S++ M+ +I Sbjct: 92 FLACAVYGLRN--EDRPQLQAALFLFLQSVSLGLFVAADLILFFVFFDLSIVAMYFVIAG 149 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVM--CWEKKTSSIIDLYAMSKFPFS--IQYW 210 WG + +A KFFLYTF GS+ +L + + + T +++L A + S Sbjct: 150 WGHGDAARSALKFFLYTFLGSLALLVGFIGLYIAADPHTFDMVELAATTPLAASPLAGGL 209 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 + A A+K P PFHTWLP AH AP GS LAG++LKMG YG +R +P+ P A Sbjct: 210 VLAAILLGLAVKTPTIPFHTWLPPAHTDAPAVGSAVLAGVLLKMGTYGFVRIAMPMLPQA 269 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI----------GIFS 320 + +A I + ++++IY +LV++ QTD+K++IAY+S+ HMGY+ + G Sbjct: 270 WRDWAWPIIAVGVVSVIYGALVALAQTDLKRMIAYTSVNHMGYIVVAVGAAGLTAAGTAD 329 Query: 321 GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFT 380 + V GA+ QM+SHGL+++ALF GV YDR + D+ +YGGL + P+ A + V Sbjct: 330 AREVAVVGAVTQMVSHGLITAALFLLAGVFYDRAGSYDMDSYGGLAGSAPKLAALFAVGA 389 Query: 381 MANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK 440 A++GLPG SGFI EF + S A LA G++L+A L ++V G ++ Sbjct: 390 FASLGLPGFSGFIAEFQIFAGSIAASPVTA-LALPGILLTAALFLRALQRVFTGPTRGHA 448 Query: 441 VQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 V DL + E V + VL+V G+ P P+ D Sbjct: 449 V-DFTDLRVPETASVSTLLVLSVAIGLVPRPLLD 481 >gi|27885247|gb|AAO26104.1| NADH dehydrogenase subunit 4 [Helenium bigelovii] Length = 417 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + D +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFDTSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|323146389|gb|ADX32719.1| NADH dehydrogenase subunit D [Ageratina luciae-brauniae] Length = 500 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFNTSNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665178|gb|ACB29129.1| NADH dehydrogenase subunit D [Atractylis cancellata] Length = 500 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WID+F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWIDFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P TWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLRTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885281|gb|AAO26121.1| NADH dehydrogenase subunit 4 [Lipochaeta integrifolia] gi|27885285|gb|AAO26123.1| NADH dehydrogenase subunit 4 [Lundellianthus jaliscensis] gi|27885293|gb|AAO26127.1| NADH dehydrogenase subunit 4 [Melanthera nivea] gi|27885319|gb|AAO26140.1| NADH dehydrogenase subunit 4 [Perymeniopsis ovalifolia] gi|27885321|gb|AAO26141.1| NADH dehydrogenase subunit 4 [Perymenium macrocephalum] gi|27885345|gb|AAO26153.1| NADH dehydrogenase subunit 4 [Rensonia salvadorica] gi|27885374|gb|AAO26168.1| NADH dehydrogenase subunit 4 [Tilesia baccata] Length = 417 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMAKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|170665294|gb|ACB29187.1| NADH dehydrogenase subunit D [Osteospermum asperulum] Length = 500 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 161/495 (32%), Positives = 274/495 (55%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ + + I + F + F+ Q Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYH-FELDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFVMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSMFSPWLMIVGTIQIIYAASTSPGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ +GI S +G+ GA+ Q++SHG + +ALFF G+ YDR+ + Sbjct: 303 KRIAYSSVSHMGFILVGIASITDTGLNGAILQIISHGFIGAALFFLAGMSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 363 EMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +Y L + R++ +G + D RE + I + + G+YP + Sbjct: 423 AIGIILTPIYLLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + I+ NY Sbjct: 483 LSLSVDKVEGILSNY 497 >gi|323146395|gb|ADX32722.1| NADH dehydrogenase subunit D [Garberia heterophylla] Length = 500 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYFLIPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|329940450|ref|ZP_08289731.1| proton-translocating NADH-quinone oxidoreductase subunit M [Streptomyces griseoaurantiacus M045] gi|329300511|gb|EGG44408.1| proton-translocating NADH-quinone oxidoreductase subunit M [Streptomyces griseoaurantiacus M045] Length = 502 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 160/438 (36%), Positives = 241/438 (55%), Gaps = 21/438 (4%) Query: 51 VWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE 109 +W+ FD G Q + WI YH+GVDG+S+ LV LT L + S + + Sbjct: 47 LWAAFDPG-GGLQDEQRVRWIPSAGVGYHVGVDGLSLPLVALTCLLFLAVAVYSLRE-TK 104 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAA-YKFF 168 R Y+ FL L+S+ +G F +LD++LF++FF+ S++ MF +I VWG ER AA KFF Sbjct: 105 RVRSYVCLFLFLQSVSLGLFAALDLILFFVFFDLSIVGMFFVIAVWGHGERARAAALKFF 164 Query: 169 LYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYAMSKFPFSIQY--WMWIAFFCSFAIKIP 224 LYTF GS+ +L + + T I+DL + Y + +A A+K P Sbjct: 165 LYTFIGSLALLLGFIGLYLAATPHTFDIVDLTRANPLAGRGLYAGLVLLAIGVGLAVKTP 224 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 PFHTWLP AH AP AGS LAG++LKMG YG +R +PL P + +++A VI + + Sbjct: 225 TVPFHTWLPPAHTDAPAAGSAILAGVLLKMGTYGFVRIAMPLLPGSWRHYALVIVIVGAV 284 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI-----GIFSGMKS-----GVEGAMFQML 334 +++Y +LV++ QTD K++IAY+S+ HMGY+ + G +G + V GA+ QM+ Sbjct: 285 SVVYGALVALAQTDFKRMIAYTSVNHMGYIILAVGAAGTLAGSDAQARSLAVTGALAQMV 344 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGL++ +LF GV+YDR T I AY GL + PR+A V V A++G+PG SGFI Sbjct: 345 SHGLITGSLFLLTGVLYDRGGTYAIDAYSGLAAHTPRFAAVTAVAAFASLGIPGFSGFIA 404 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE---KVQQLKDLSLRE 451 EF + + +A G++++A L R + GV + + + DL E Sbjct: 405 EFQIFTGSLASQTVATAIAVTGILITAALFLRALRGMFLGVPRLPPSITTRGIADLKRSE 464 Query: 452 RCMVYPIAVLTVFFGIYP 469 + + + G+ P Sbjct: 465 ALSTVALLAVALVIGVAP 482 >gi|27885361|gb|AAO26161.1| NADH dehydrogenase subunit 4 [Squamopappus skutchii] Length = 417 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLFMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|27885201|gb|AAO26081.1| NADH dehydrogenase subunit 4 [Damnxanthodium calvum] gi|27885366|gb|AAO26164.1| NADH dehydrogenase subunit 4 [Synedrella nodiflora] Length = 417 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNKSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|170665302|gb|ACB29191.1| NADH dehydrogenase subunit D [Pertya scandens] Length = 500 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI +F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWIHFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIVITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885351|gb|AAO26156.1| NADH dehydrogenase subunit 4 [Sigesbeckia blakei] gi|27885380|gb|AAO26171.1| NADH dehydrogenase subunit 4 [Trigonospermum melampodioides] Length = 417 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WID+F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWIDFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|27885219|gb|AAO26090.1| NADH dehydrogenase subunit 4 [Encelia californica] gi|27885261|gb|AAO26111.1| NADH dehydrogenase subunit 4 [Idiopappus quitensis] gi|27885305|gb|AAO26133.1| NADH dehydrogenase subunit 4 [Oblivia mikanioides] gi|27885327|gb|AAO26144.1| NADH dehydrogenase subunit 4 [Philactis zinnioides] gi|28932918|gb|AAO60645.1| NADH dehydrogenase subunit 4 [Rudbeckia hirta] Length = 417 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|27885227|gb|AAO26094.1| NADH dehydrogenase subunit 4 [Constancea nevinii] gi|27885245|gb|AAO26103.1| NADH dehydrogenase subunit 4 [Guardiola tulocarpus] Length = 417 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 234/382 (61%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + +A + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAIAFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMLRQMFYG 391 >gi|27885363|gb|AAO26162.1| NADH dehydrogenase subunit 4 [Steiractinia sodiroi] gi|27885391|gb|AAO26176.1| NADH dehydrogenase subunit 4 [Wedelia tegetis] Length = 417 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGLSGFVAEVLVFLGIITSQKYLLMAKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|323146407|gb|ADX32728.1| NADH dehydrogenase subunit D [Liatris microcephala] Length = 500 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVTLEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYFLIPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885184|gb|AAO26072.1| NADH dehydrogenase subunit 4 [Calyptocarpus vialis] Length = 417 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNKSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|170665274|gb|ACB29177.1| NADH dehydrogenase subunit D [Sinclairia palmeri] Length = 500 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 164/497 (32%), Positives = 273/497 (54%), Gaps = 17/497 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI ++LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 421 VMAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 481 FVLSLSVDKVEGILSNY 497 >gi|27885210|gb|AAO26086.1| NADH dehydrogenase subunit 4 [Dugesia mexicana] Length = 417 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|170665326|gb|ACB29203.1| NADH dehydrogenase subunit D [Stenopadus talaumifolius] gi|170665332|gb|ACB29206.1| NADH dehydrogenase subunit D [Stomatochaeta condensata] Length = 500 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLTGAILQIVSHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGLITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885370|gb|AAO26166.1| NADH dehydrogenase subunit 4 [Tetrachyron orizabensis] Length = 417 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W + + R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWP-VTRDCRLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|56752129|ref|YP_172830.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus elongatus PCC 6301] gi|81300785|ref|YP_400993.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus elongatus PCC 7942] gi|81820566|sp|Q5N060|NU4C2_SYNP6 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 2; AltName: Full=NAD(P)H dehydrogenase I, chain 4 2; AltName: Full=NDH-1, chain 4 2 gi|123556513|sp|Q31LR3|NU4C2_SYNE7 RecName: Full=NAD(P)H-quinone oxidoreductase chain 4 2; AltName: Full=NAD(P)H dehydrogenase I, chain 4 2; AltName: Full=NDH-1, chain 4 2 gi|56687088|dbj|BAD80310.1| NADH dehydrogenase subunit 4 [Synechococcus elongatus PCC 6301] gi|81169666|gb|ABB58006.1| proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus elongatus PCC 7942] Length = 534 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 166/504 (32%), Positives = 271/504 (53%), Gaps = 31/504 (6%) Query: 4 PFLSIVTFLPFLG-VFVILFSSYLGCGRR-SFFGVALGISTINFIFSLFV-WSVFDKGRS 60 P+L+ + LP + +F+ L G G ++ + +G+ ++FI + W+ +D Sbjct: 7 PWLTTIILLPIVAALFIPLLPDRDGKGTTIRWYSLIVGL--VDFILLVVAFWTSYDFSNP 64 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q++E Y W+ ++ +G DG+S+ L++LT F++ +L++W F+ FL Sbjct: 65 DLQLVESYAWVPQIGLNWSVGADGLSMPLILLTGFISTLAMLAAWPV---TFKTRFFYFL 121 Query: 120 VLE--SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L I F D+L+F+ +E LIP+++++ +WGG R YAA KF LYT S+F Sbjct: 122 MLAMYGGQILVFAVQDLLVFFFAWELELIPVYLLLAIWGGKRRQYAATKFILYTAGSSLF 181 Query: 178 MLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 +L A + M + S A ++ Q ++ F ++ +K+P+ P HTWLP+AH Sbjct: 182 ILVASLAMAFSGDVISFDFQTLAAKEYAIGFQLLLYAGFLIAYGVKLPIVPLHTWLPDAH 241 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + LAGI+LKMGGY R + P A FAP++ L ++ I+YA+L S Q Sbjct: 242 GEATAPVHMLLAGILLKMGGYALFRMNAGMLPEAHARFAPILVLLGVVNILYAALTSFAQ 301 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSSI+HMG+V IG+ S + G+ G+M QM+SHGL+ ++LFF VG YDR HT Sbjct: 302 RNLKRKIAYSSISHMGFVLIGLGSFTQLGLSGSMLQMVSHGLIGASLFFLVGATYDRTHT 361 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-------- 408 + GG+ M + + MA++ LPG SGF+ E +V + F S+ Sbjct: 362 LMLDEMGGVGQKMRKMFAMWTTCAMASLALPGMSGFVAELMVFVG-FATSDAYGLPFKVV 420 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSK--CEKVQQLKDLSLRE----RCMVYPIAVLT 462 V LA+ GV+L+ +Y L + R++ FG + + L D RE C++ PI Sbjct: 421 VISLAAIGVILTPIYLLSMLREIFFGPENKTLTEHETLVDAEPREVYIIACLLVPI---- 476 Query: 463 VFFGIYPVPIRDTFSVPLSSIIEN 486 + G+YP + L + E Sbjct: 477 IGIGLYPKLTTQVYDATLVQLTER 500 >gi|227488696|ref|ZP_03919012.1| NADH dehydrogenase subunit M [Corynebacterium glucuronolyticum ATCC 51867] gi|227091357|gb|EEI26669.1| NADH dehydrogenase subunit M [Corynebacterium glucuronolyticum ATCC 51867] Length = 521 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 264/459 (57%), Gaps = 8/459 (1%) Query: 21 LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH-L 79 LF ++L G VA S + ++ + + FD G + Q WI +Y+ L Sbjct: 16 LFMTFLRSGAARV--VAFVASLVPLALAIVMVAGFDPG-AGMQYTVEIPWIPALGAYYAL 72 Query: 80 GVDGISILLVVLTTFLTPFCILSS----WKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 GVDGI++ +V+LT LTP IL S +++ Q ++ L +E + I F S D+L Sbjct: 73 GVDGIALAMVLLTAILTPIVILYSGTEHYRADQMGEHAFLGFVLAIEGLSIFVFSSTDVL 132 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 LFY+FFEA+LIPMF +IG +GG R YAA KF LY+ + ML AI+ + + ++ Sbjct: 133 LFYLFFEATLIPMFFLIGGFGGENRRYAAIKFLLYSLGSGLLMLAAIIGVYIVGDGTFLL 192 Query: 196 DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 + ++ W+++ F +F +K PM PFHTWLP+A G+V + IM K+G Sbjct: 193 SDLQDADLGGTVGMWLFVGFMIAFIVKAPMVPFHTWLPDAAENTTPGGAVMMVAIMDKIG 252 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 +G IRF + LFP A++YF V+ +L++I++I+ +L ++ QT++ + +AY+S++H G++ Sbjct: 253 TFGMIRFAMCLFPEATEYFRNVMIWLAVISVIWGALAALAQTNLMRFVAYTSVSHFGFIV 312 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 +G+F+ ++ V A M +HGL ++ LF VG + R T DI A+GG+ P Sbjct: 313 LGMFAVNETAVSAASLYMFNHGLSTAMLFLVVGYMIKRRSTADIHAFGGVQKVAPLLGGY 372 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 +++ ++ + LPG + F+ EF VI F + A +A+ +VL+A Y + +Y+ + G Sbjct: 373 LLIALLSAVALPGLAPFVSEFGVIAGTFNGAPWAAGIAAIAMVLAACYIMRVYKTTMTGE 432 Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 E ++ + DL+ ER ++ P+ VL + FG+YP P+ + Sbjct: 433 PGDEVIRTMPDLTHPERWVLAPLIVLLIVFGVYPEPLTN 471 >gi|27885223|gb|AAO26092.1| NADH dehydrogenase subunit 4 [Enydra sessilis] Length = 417 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIAPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEILFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLFMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|170665330|gb|ACB29205.1| NADH dehydrogenase subunit D [Stokesia laevis] Length = 452 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 15 QLVEDYKWINFFDFRWQLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 73 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 74 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 133 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 134 VLGVGLYGSNEPTFNFETSVNQSYPIALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 193 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 194 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSLFSPWLMIVGTIQIIYAASTSPGQRNL 253 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 254 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 313 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 314 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 373 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 374 MAIGMILTPIYSLSMSRQMFYG 395 >gi|27885168|gb|AAO26064.1| NADH dehydrogenase subunit 4 [Ambrosia trifida] Length = 417 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNRSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|318041214|ref|ZP_07973170.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. CB0101] Length = 540 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 169/493 (34%), Positives = 273/493 (55%), Gaps = 13/493 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+LS++T LP +++ G + +AL ++ LFV+S +D + Sbjct: 36 PWLSLITLLPVAVAPLLMVLPGDGTDPKLPRTIALITLLVDLGLMLFVFSQHYDGSIAGL 95 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E + W+ + L DG+S LVVL+ +T + +SW +IQ+ R Y LV Sbjct: 96 QLVERFAWVPAIGLEWSLATDGLSAPLVVLSGLVTLLSVAASW-NIQKKTRLYFALLLVQ 154 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S FLS D LLF++ +E L+P++++I +WGG +R YAA KF LYT S+ +L + Sbjct: 155 ASAQAMVFLSQDFLLFFLAWELELVPVYLLIAIWGGQQRQYAATKFILYTATASLLILVS 214 Query: 182 IVVMCWEKK-TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + T ++ +L A S + ++ F F +K+PMFP HTWLP+AH +A Sbjct: 215 GLALALNGPFTLNLSELIARSPG-GTFGLLCYLGFLVGFGVKLPMFPLHTWLPDAHGEAN 273 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 S+ LAG++LKMGGY +RF + + P A AP + L ++ I+Y +L + Q ++K Sbjct: 274 APVSMLLAGVLLKMGGYALLRFNVQMLPEAHLVLAPALVVLGIVNIVYGALNAFAQDNVK 333 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 + IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF GV Y+R T I Sbjct: 334 RRIACSSVSHMGFVLLGIGAIDSLGMSGAMLQMISHGLIAAAMFFVTGVFYERTKTLSIP 393 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-TVA------VLA 413 GGL +P + ++A++ LPG SGF+ E V + + N++ TV VLA Sbjct: 394 NMGGLAKVLPITFAFFLASSLASLALPGMSGFVSEITVFLGLTSNADFTVGFRVIAVVLA 453 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 + GVVL+ +Y L L R+V FG + + L D+ RE + + V T+ G +P Sbjct: 454 AIGVVLTPVYLLSLCRRVFFG-PRIPALAVLGDMKPRELVIGLTLLVPTLVIGFWPRVAI 512 Query: 474 DTFSVPLSSIIEN 486 D + +++ + Sbjct: 513 DVYEASTTALSDT 525 >gi|27885341|gb|AAO26151.1| NADH dehydrogenase subunit 4 [Ratibida columnifera] Length = 417 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 144/382 (37%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI +F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWISFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLIIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGFI E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFIAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|27885191|gb|AAO26076.1| NADH dehydrogenase subunit 4 [Chromolepis heterophylla] Length = 417 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|323146409|gb|ADX32729.1| NADH dehydrogenase subunit D [Carphephorus tomentosus] Length = 500 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYFLIPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVICIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|290486857|gb|ADD29813.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Ilex cornuta] Length = 500 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 154/442 (34%), Positives = 255/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + IS + + + + + F Sbjct: 5 PWLTIIVVLPISAGSLIFFLPH--KGNRVIRWYTIFISILELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+++ Y WI++F + LG+DG+SI ++LT F+T L++ + + + R + L + Sbjct: 63 QLVDDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGPFSSRDLLLFFIMWELELIPVYLLLSRWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ A +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSANQSYPVALEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+L S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLIIVGTIQIIYAALTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIGSITATGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 A GG+ MP+ + F+MA++ LPG SGF+ E +V + + + ++ Sbjct: 362 DAMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYLLMPKILITLV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMSRQMFYG 443 >gi|323146393|gb|ADX32721.1| NADH dehydrogenase subunit D [Eutrochium maculatum] Length = 500 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYFLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665202|gb|ACB29141.1| NADH dehydrogenase subunit D [Chrysanthemoides monilifera] Length = 500 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 161/495 (32%), Positives = 273/495 (55%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ + + I + F + F+ Q Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYH-FELDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFVMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSMFSPWLMIVGTIQIIYAASTSPGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ +GI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFILVGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 363 EMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +Y L + R++ +G + D RE + I + + G+YP + Sbjct: 423 AIGIILTPIYLLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + I+ NY Sbjct: 483 LSLSVDKVEGILSNY 497 >gi|27885393|gb|AAO26177.1| NADH dehydrogenase subunit 4 [Arnica dealbata] Length = 417 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKMFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFI 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGIILTPIYLLSMLRQMFYG 391 >gi|114330020|ref|YP_740701.1| NADH-plastoquinone oxidoreductase subunit 4 [Nandina domestica] gi|122165917|sp|Q09FR0|NU4C_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|114054522|gb|ABI49915.1| NADH-plastoquinone oxidoreductase subunit 4 [Nandina domestica] Length = 500 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 151/436 (34%), Positives = 249/436 (57%), Gaps = 12/436 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ + Y WI+ F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLEQDYKWINIFDFHWRLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 181 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + M ++ A +P +++ ++ FF ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VSGMGLYGSNEPTLNFETSANQSYPVALEILLYFGFFIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S+ Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSLGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG+ +GI S +G+ GA+ QM+SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFTILGISSITDTGLNGAILQMISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 DEMGGIAIPMPKIFTLFSSFSMASLALPGMSGFVAELVVFFGIITSEKFFLMPKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + GIYP Sbjct: 422 TAIGMILTPIYSLSMLRQIFYGYKQFNVPNSHFFDSGPRELFVSICIFLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 482 VFSLSVDKVEAILSNY 497 >gi|27885315|gb|AAO26138.1| NADH dehydrogenase subunit 4 [Parthenium hysterophorus] Length = 417 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|170665338|gb|ACB29209.1| NADH dehydrogenase subunit D [Trichocline boecheri] Length = 500 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIMVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ ++I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIILYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F P + + I IIYA+ S Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFCPWLMIVGTIQIIYAASTSPGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILANY 497 >gi|170665306|gb|ACB29193.1| NADH dehydrogenase subunit D [Plazia daphnoides] Length = 500 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + L GI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLDGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFIPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665280|gb|ACB29180.1| NADH dehydrogenase subunit D [Macledium zeyheri] Length = 500 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 162/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGIAIPLPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665254|gb|ACB29167.1| NADH dehydrogenase subunit D [Hecastocleis shockleyi] Length = 500 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 271/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +ILF + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLILFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y W ++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWDNFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + + LFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAGLFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 DEMGGVAIPMPKIFTIFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFG 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDFGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665170|gb|ACB29125.1| NADH dehydrogenase subunit D [Ainsliaea apiculata] Length = 500 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI +F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWIHFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTFNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885359|gb|AAO26160.1| NADH dehydrogenase subunit 4 [Spilanthes urens] Length = 417 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSPKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|27885172|gb|AAO26066.1| NADH dehydrogenase subunit 4 [Arnica mollis] Length = 417 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFI 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGIILTPIYLLSMLRQMFYG 391 >gi|27885217|gb|AAO26089.1| NADH dehydrogenase subunit 4 [Eclipta prostrata] Length = 417 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMAKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|27885357|gb|AAO26159.1| NADH dehydrogenase subunit 4 [Sphagneticola trilobata] Length = 417 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGMDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMAKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|27885333|gb|AAO26147.1| NADH dehydrogenase subunit 4 [Psathyrotes annua] Length = 417 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + D +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGYNEPTLNFDTLVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIINSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|323146399|gb|ADX32724.1| NADH dehydrogenase subunit D [Litrisa carnosa] gi|323146401|gb|ADX32725.1| NADH dehydrogenase subunit D [Carphephorus corymbosus] gi|323146403|gb|ADX32726.1| NADH dehydrogenase subunit D [Carphephorus pseudoliatris] gi|323146405|gb|ADX32727.1| NADH dehydrogenase subunit D [Liatris spicata] gi|323146411|gb|ADX32730.1| NADH dehydrogenase subunit D [Carphephorus bellidifolius] gi|323146413|gb|ADX32731.1| NADH dehydrogenase subunit D [Trilisa odoratissima] Length = 500 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYFLIPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|170665300|gb|ACB29190.1| NADH dehydrogenase subunit D [Perezia purpurata] Length = 500 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 153/442 (34%), Positives = 255/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ P +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVFPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ ++I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIIYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMLRQMFYG 443 >gi|27885317|gb|AAO26139.1| NADH dehydrogenase subunit 4 [Perityle lindheimeri] Length = 469 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 153/442 (34%), Positives = 255/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 422 MAIGMILTPIYLLSMSRQMFYG 443 >gi|27885289|gb|AAO26125.1| NADH dehydrogenase subunit 4 [Marshallia caespitosa] Length = 417 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + D +P +++ ++ FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFDTSVNQSYPVALEIIFYLGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKKFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 IAIGMILTPIYLLSMSRQMFYG 391 >gi|170665258|gb|ACB29169.1| NADH dehydrogenase subunit D [Heterolepis aliena] Length = 500 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 165/497 (33%), Positives = 272/497 (54%), Gaps = 17/497 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI +F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWIHFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 421 VMAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 481 FVLSLSVDKVEGILSNY 497 >gi|27885187|gb|AAO26074.1| NADH dehydrogenase subunit 4 [Chaetymenia peduncularis] Length = 417 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 234/382 (61%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTFNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSLGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|170665248|gb|ACB29164.1| NADH dehydrogenase subunit D [Gorteria diffusa] Length = 500 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 161/479 (33%), Positives = 266/479 (55%), Gaps = 17/479 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + ++ +P +++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGIGLYGSNEPTLNFETSVNQPYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 421 VMAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYP 479 >gi|27885221|gb|AAO26091.1| NADH dehydrogenase subunit 4 [Engelmannia peristenia] Length = 417 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|290486877|gb|ADD29823.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Ficus sp. Moore 315] Length = 503 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 260/478 (54%), Gaps = 15/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ L I I + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPHRGNKVIRWY--TLCICIIELLLTTYAFGYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID+ S+ LG+DGISI ++LT F+T L++ + I R + L + Sbjct: 63 QLTEDYKWIDFLDFSWRLGIDGISIGPILLTGFITTLATLAA-RPITRESRVFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S F+L Sbjct: 122 YSGQIGPFSSQDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGSSAFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 I+ +C ++ A +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 ILGICLSGSNEPTLNFETSANQSYPVALEMLFYIGFFIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IG+ S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGLGSINDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLAYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---TVAVLASF- 415 GG+ +P+ + +MA++ LPG SGF+ E +V + + +L +F Sbjct: 362 DEMGGMAITIPKIFTTFSILSMASLALPGMSGFVAELIVFFGILTSQKYLLMTKILITFV 421 Query: 416 ---GVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 G++L+ +Y L + R++ +G D RE + I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFTATNSYFVDSGPREFFVSISILLPVIAIGIYP 479 >gi|183217795|ref|YP_001837415.1| NADH dehydrogenase subunit 4 [Guizotia abyssinica] gi|193806241|sp|B2LMP8|NU4C_GUIAB RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|179366310|gb|ACB86581.1| NADH-plastoquinone oxidoreductase subunit 4 [Guizotia abyssinica] Length = 500 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 153/443 (34%), Positives = 257/443 (58%), Gaps = 16/443 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I T+ + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICTLELLLTTYAFCYHFRLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSLGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+++++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSISSLALPGMSGFVAEVIVFLGIITSQKYLLMPKIVITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFG 434 + + G++L+ +Y L + R++ +G Sbjct: 421 VMAIGMILTPIYLLSMSRQMFYG 443 >gi|170665222|gb|ACB29151.1| NADH dehydrogenase subunit D [Dolichlasium lagascae] Length = 500 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 162/496 (32%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIKWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI +LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPFLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ ++I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSVNQSYPVALEIIIYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885164|gb|AAO26062.1| NADH dehydrogenase subunit 4 [Alloispermum scabrifolium] Length = 417 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 234/382 (61%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMVVGTIQIIYAASTSLGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|27885378|gb|AAO26170.1| NADH dehydrogenase subunit 4 [Tridax balbisioides] Length = 417 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEILFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGIILTPIYLLSMSRQMFYG 391 >gi|22299668|ref|NP_682915.1| NAD(P)H-quinone oxidoreductase subunit D4 [Thermosynechococcus elongatus BP-1] gi|22295852|dbj|BAC09677.1| NADH dehydrogenase subunit 4 [Thermosynechococcus elongatus BP-1] Length = 498 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 160/421 (38%), Positives = 248/421 (58%), Gaps = 6/421 (1%) Query: 27 GCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGIS 85 G R++ +A + I + SL + +FD G ++ Q+ E W++ SY L VDG+S Sbjct: 29 GSLGRTYRSLAAVVMAIALVVSLAIARLFDPGNAAPQLTEVIPWLEPLGLSYRLSVDGLS 88 Query: 86 ILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASL 145 + L+VL FLT +L++ ++ R Y L+L + V GAFL+ ++LLF++F+E L Sbjct: 89 LPLLVLNNFLTLIALLATSVNLPRP-RLYYPLVLLLNAGVSGAFLADNLLLFFLFYELEL 147 Query: 146 IPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-IDLYAMSKFP 204 IP++++I +WGGS R YAA KF +YT + +L + + W S D + P Sbjct: 148 IPLYLLIAIWGGSRRSYAATKFLIYTAISGVLLLAGFLGLVWLADAPSFDFDPQLSTLLP 207 Query: 205 FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 S Q + F IKIP+ PFHTWLP+AHV+A T SV LAG++LK+G YG +RF + Sbjct: 208 LSSQLVLLGLILVGFGIKIPLVPFHTWLPDAHVEASTPISVLLAGVLLKLGTYGLVRFGV 267 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 LFP A Q AP + ++I+++Y SL+++ QTD+KK++AYSSI HMG+V + + Sbjct: 268 QLFPQAWQVLAPGLATWAVISVLYGSLMAIAQTDMKKMVAYSSIGHMGFVLLATATATPL 327 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH---NMPRYAVVMMVFTM 381 + A+ QM+SHGL+S+ LF VGV+Y++ +R+I GL++ +P +M+V M Sbjct: 328 SILAAIAQMMSHGLISALLFLLVGVVYEKTGSRNIEVLRGLLNPERGLPLIGSLMIVGVM 387 Query: 382 ANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV 441 A+ G+PG GF+ EFL+ S F +L G L+++Y L L +V FG E + Sbjct: 388 ASGGIPGMVGFVAEFLIFRSSFPTFPVQTLLCMVGTGLTSVYFLLLVNRVFFGRLPNELI 447 Query: 442 Q 442 Sbjct: 448 D 448 >gi|27885301|gb|AAO26131.1| NADH dehydrogenase subunit 4 [Montanoa revealii] Length = 417 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ ++ FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYVGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAIIFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMLRQIFYG 391 >gi|27885353|gb|AAO26157.1| NADH dehydrogenase subunit 4 [Silphium perfoliatum] Length = 417 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNF 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|218457908|ref|ZP_03497999.1| NADH dehydrogenase subunit M [Rhizobium etli Kim 5] Length = 191 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 124/192 (64%), Positives = 161/192 (83%), Gaps = 1/192 (0%) Query: 101 LSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER 160 ++SW SI++ +EYMIAFL+LE+M++G F+SLD++LFY+FFEA LIPMF+IIGVWGG +R Sbjct: 1 MASWLSIEKRLKEYMIAFLILETMMVGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDR 60 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 +YA+YKFFLYT GS+ ML AI+ M W+ T+ I L A KFP ++Q W+W+AFF SFA Sbjct: 61 VYASYKFFLYTLLGSVLMLLAIMAMYWQAGTTDITALLA-YKFPPALQTWLWLAFFASFA 119 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+PM+P HTWLP+AHVQAPTAGSV LAG++LK+GGYG IRF L +FP+AS YFAP++F Sbjct: 120 VKMPMWPVHTWLPDAHVQAPTAGSVILAGVLLKLGGYGLIRFSLGMFPVASDYFAPLVFA 179 Query: 281 LSLIAIIYASLV 292 LS+IAIIY SLV Sbjct: 180 LSVIAIIYTSLV 191 >gi|27885331|gb|AAO26146.1| NADH dehydrogenase subunit 4 [Polymnia canadensis] Length = 469 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 154/443 (34%), Positives = 255/443 (57%), Gaps = 16/443 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPHK---GNRVIRWYTICICILELLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMTKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFG 434 + + G++L+ +Y L + R++ +G Sbjct: 421 VMAIGMILTPIYLLAMSRQMFYG 443 >gi|170665198|gb|ACB29139.1| NADH dehydrogenase subunit D [Chaptalia nutans] Length = 500 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 271/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTFNFETSVNQSYPVALEMIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFCPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASLTDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFTSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 I + I+ NY Sbjct: 482 ILSLSVDKVEGILSNY 497 >gi|27885397|gb|AAO26179.1| NADH dehydrogenase subunit 4 [Zexmenia serrata] Length = 417 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNF 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGLSGFVAEVLVFLGIITSQKYLLMAKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|194476792|ref|YP_002048971.1| NAD(P)H-quinone oxidoreductase subunit 4 [Paulinella chromatophora] gi|171191799|gb|ACB42761.1| NAD(P)H-quinone oxidoreductase subunit 4 [Paulinella chromatophora] Length = 564 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 165/524 (31%), Positives = 277/524 (52%), Gaps = 49/524 (9%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRR-SFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P+LS+ P + I F G G+ ++ + + + T + + ++ +D +S Sbjct: 16 DFPWLSVSILFPIVSALFIPFIPDKGDGKTIRWYALTITMLTCTEVIVAY-FTAYDPKQS 74 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAF 118 Q++E W+ ++ +G DG+S+ L+VL++F+T +L++W S + F ++I Sbjct: 75 GLQLVEKVEWLPILHLNWAVGADGLSMPLIVLSSFITTLAVLAAWPLSFKPKFFYFLI-- 132 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L ++ I F + +MLLF++ +E L+P+++++ +WGG R AA KF LYT SIF+ Sbjct: 133 LAMDGGQIAVFAAQNMLLFFLTWELELVPVYILLAIWGGHHRQAAATKFILYTALSSIFI 192 Query: 179 LFAIVVMC--WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 A + M TS A + Q W ++AF +F +K+P+ P HTWLP AH Sbjct: 193 FIAALAMNSFGNGLTSFEYTDLANKGLDTNSQIWCYLAFLIAFGVKLPIVPMHTWLPAAH 252 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + LAGI+LKMGGY +RF + + P A FAP++ +I IIYA+ S + Sbjct: 253 GEATAPVHMLLAGILLKMGGYALLRFNVQMLPEAHSLFAPLLVIFGMINIIYAAFTSFGE 312 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++KK IAYSSI+HMG+V IGI S G M QM+SHGL+ + FF +G YDR + Sbjct: 313 ENVKKKIAYSSISHMGFVLIGIGSFSDLATTGTMLQMISHGLIGACFFFVIGGTYDRTAS 372 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-------- 408 + + GG+ MP + + +A++ LPG SGF+ E L++++ F S Sbjct: 373 LSMSSLGGIAQKMPIMFALWTIVALASLALPGMSGFVSE-LMVLTGFTTSEAYTIGFRVV 431 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEK------------VQQLK----------- 445 + LA+ G++++ +Y L + R+V FG K K Q+L+ Sbjct: 432 ITSLAALGIIITPIYLLSMLRQVFFGEEKKAKFKEDIAMLLPGEEQRLRSALSIYSKKDY 491 Query: 446 -DLSLRE----RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 D+ RE C++ PI + G+YP + D++ + S++ Sbjct: 492 IDVESREIYIFACLLIPI----IGIGLYPRLVTDSYRSTIESLV 531 >gi|170665158|gb|ACB29119.1| NADH dehydrogenase subunit D [Achillea millefolium] Length = 500 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 162/497 (32%), Positives = 272/497 (54%), Gaps = 17/497 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+++ Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L Sbjct: 62 IQLVDDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFASRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + ++ +P +++ +I FF +FA+K+P+ P HTWLP+ H + Sbjct: 181 GVLGIGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 421 VMAIGMILTPIYLLSMLRQMFYGYKLFNTPNSYVFDSGPRELFISISIFLPVIGIGMYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 481 FVLSLSVDKVEGILSNY 497 >gi|164421163|ref|YP_001648647.1| NADH dehydrogenase subunit 4 [Hippospongia lachne] gi|158939005|gb|ABW83927.1| NADH dehydrogenase subunit 4 [Hippospongia lachne] Length = 469 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 177/391 (45%), Positives = 248/391 (63%), Gaps = 3/391 (0%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 GVDG+S ++L L P CIL SW+SI+ RE++I VL ++IG F +D+L FYI Sbjct: 71 GVDGLSYCFLLLVILLLPICILVSWESIKFLVREFIICLFVLSWLLIGVFTIMDILGFYI 130 Query: 140 FFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 FEA LIPMF+I+ +WG E+I A + FF +TFFGS+F+L I+++ + + + +Y Sbjct: 131 LFEAVLIPMFLIVILWGSREEKIRAGFYFFFFTFFGSVFLLLGIIILYIKVGATDYMYIY 190 Query: 199 AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 K Q ++I FF FAIK+P+FPFH WLP AHV+AP AGSV LAGI+LK+GGYG Sbjct: 191 NY-KINNYWQCLLFILFFWGFAIKVPLFPFHIWLPQAHVEAPVAGSVLLAGILLKLGGYG 249 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +RF L LFP+ ++Y + + L L+A+IY SLV+ Q D+K+++AYSS+AHMG V +G+ Sbjct: 250 FLRFSLGLFPIGAEYCSSFVLTLGLLAVIYGSLVTCRQVDLKRVVAYSSVAHMGVVVLGL 309 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 FS G G ++ M +HGLVS LF V +YDR +TR I Y G+ MP + + Sbjct: 310 FSLTSEGEMGGVYLMFAHGLVSPGLFIAVTCLYDRYNTRLIRYYRGIWVKMPVFCFFFFL 369 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 T+AN+GLP + F+GEFL +M +FQ S + + VVLSA YSL+LY +V FG Sbjct: 370 LTLANLGLPLSLNFVGEFLCLMGLFQYSWYFGLCSCLSVVLSAAYSLYLYNRVAFGAYSK 429 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 V +DL+ RE + + L GI P Sbjct: 430 YMVGG-RDLNRREVYVFVVLLCLVYLLGICP 459 >gi|27885170|gb|AAO26065.1| NADH dehydrogenase subunit 4 [Aphanactis jamesoniana] Length = 417 Score = 266 bits (679), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 234/382 (61%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQGNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHGL+ +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGLMGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|170665244|gb|ACB29162.1| NADH dehydrogenase subunit D [Gochnatia hiriartiana] Length = 500 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+ L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFIATLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNRSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGLSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885329|gb|AAO26145.1| NADH dehydrogenase subunit 4 [Podachaenium eminens] Length = 417 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F++A++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSLASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|317178015|dbj|BAJ55804.1| NADH dehydrogenase subunit M [Helicobacter pylori F16] Length = 512 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 265/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E I +YH+GVDGI++ L++L + C++ ++E +++ I L+LE + Sbjct: 64 EMKELIYQIGVNYHVGVDGIALFLLLLNAIVVLLCVIY----VKERRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + S I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANSYGMMSFDILDWYQLN-FSSEVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLAGILEERTSSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKAGNNQISVFEDLNARE 453 >gi|27885249|gb|AAO26105.1| NADH dehydrogenase subunit 4 [Helianthus annuus] Length = 417 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+S+ V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSLGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I F +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFLIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMVVGTIQIIYAASTSLGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|27885162|gb|AAO26061.1| NADH dehydrogenase subunit 4 [Alepidocline annua] Length = 417 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYRWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|170665200|gb|ACB29140.1| NADH dehydrogenase subunit D [Chimantaea humilis] Length = 500 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +F +K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFTVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEAIVFLGLITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885279|gb|AAO26120.1| NADH dehydrogenase subunit 4 [Trilisa paniculata] Length = 417 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVTLEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYFLIPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|150251534|ref|YP_001312266.1| NADH dehydrogenase subunit 4 [Cycas taitungensis] gi|193806225|sp|A6H5P2|NU4C_CYCTA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|149941584|dbj|BAF65008.1| NADH dehydrogenase subunit 4 [Cycas taitungensis] Length = 500 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 166/485 (34%), Positives = 265/485 (54%), Gaps = 25/485 (5%) Query: 2 NLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 +LP+L+I+ LP G + LF G LGI + F+ + + F Sbjct: 3 DLPWLTIIVILPISAGSSIPLFPHR---GNNIIRWYTLGICLLEFLLMTYTFRYHFHFDD 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q+ E Y WID + LG+DG+SI + LT+F+T L++W + N R + Sbjct: 60 PLIQLEEDYDWIDLIDLHWRLGIDGLSIGPISLTSFVTTLATLAAWP-VTRNPRLFYFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S +G F S D+LLF++ +E LIP++++I +WGG R+Y+A KF LYT GSIF+ Sbjct: 119 LAMYSGQVGLFASRDILLFFLMWELELIPVYLLISMWGGKRRLYSATKFILYTAGGSIFI 178 Query: 179 LFAIVVMCWEKKTSSIID--LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 M +D + A +P ++ ++ FF + AIK+P+ P HTWLP+ H Sbjct: 179 SMGASSMGLYGFDGPTLDFEILANKYYPVVLEIVFYLGFFIAHAIKLPILPLHTWLPDTH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI LKMGGYG IR + L P A F+P + + + IIYA+L S+ Q Sbjct: 239 GEAHYSTCMLLAGIPLKMGGYGLIRINMELLPHAHSLFSPWLVIVGAVQIIYAALTSLSQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSS++HMG+V +GI S + + GA+ QM+SHGL+ +ALFF G YD + T Sbjct: 299 RNLKRRIAYSSVSHMGFVIVGIGSMADTSLNGAILQMISHGLIGAALFFLAGTSYDGIRT 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TV 409 + GG+ M + + + F+MA++ LPG SGF+ E +V++ + + + Sbjct: 359 LFLDGIGGMAIPMSKISTMFSSFSMASLALPGMSGFVAESMVLLGIITSRKYSLTFQIVI 418 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRE----RCMVYPIAVLTVF 464 A + + G++L+ ++ L + R++ +G + LKD RE C+ P+ + Sbjct: 419 AAIMAIGMILTPIHLLSMLRRMFYGYKFLNVLNPYLKDSGPREIFISICLFLPV----IG 474 Query: 465 FGIYP 469 G YP Sbjct: 475 TGTYP 479 >gi|27885233|gb|AAO26097.1| NADH dehydrogenase subunit 4 [Eutetras palmeri] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|27885265|gb|AAO26113.1| NADH dehydrogenase subunit 4 [Jaegeria hirta] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGIGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMLRQMFYG 391 >gi|27885251|gb|AAO26106.1| NADH dehydrogenase subunit 4 [Hofmeisteria fasciculata] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKMAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|27885178|gb|AAO26069.1| NADH dehydrogenase subunit 4 [Bebbia juncea] gi|27885197|gb|AAO26079.1| NADH dehydrogenase subunit 4 [Cymophora venezuelensis] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMLRQMFYG 391 >gi|27885291|gb|AAO26126.1| NADH dehydrogenase subunit 4 [Melampodium leucanthum] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALETIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFLGIITSQKYLLMPKIATTFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|27885253|gb|AAO26107.1| NADH dehydrogenase subunit 4 [Hulsea algida] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMLRQMFYG 391 >gi|217033593|ref|ZP_03439021.1| hypothetical protein HP9810_899g29 [Helicobacter pylori 98-10] gi|216943939|gb|EEC23373.1| hypothetical protein HP9810_899g29 [Helicobacter pylori 98-10] Length = 512 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E I +YH+GVDGI++ L++L + C++ ++E+ +++ I L+LE + Sbjct: 64 EMKELIYQIGVNYHVGVDGIALFLLLLNAIVVLLCVIY----VKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + I+D Y +S F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANNYGMMSFDILDWYQLS-FSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLAGILEERTSSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSVAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKAGNNQISVFEDLNARE 453 >gi|332881557|ref|ZP_08449206.1| proton-translocating NADH-quinone oxidoreductase, chain M [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680555|gb|EGJ53503.1| proton-translocating NADH-quinone oxidoreductase, chain M [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 500 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/419 (33%), Positives = 245/419 (58%), Gaps = 7/419 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+++++L+ + +SWK ++ +EY + F +L + V G F+S D+ Sbjct: 82 YSVGVDGISVVMLLLSAIIVFTGTFASWK-LKPLTKEYFLWFTLLSTGVFGFFISTDLFT 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSI 194 ++F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + +T ++ Sbjct: 141 MFMFYEVALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIYYGAGAQTMNV 200 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ ++ P +Q+ + A F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 201 LEIASLHNIPEEMQHLFFPAVFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 260 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P + L+ ++++Y + ++VQTD+K + AYSS++H G V Sbjct: 261 GGYGCFRIAMYLMPEGLAQWGDFFLILTTVSVVYGAFSAVVQTDLKYINAYSSVSHCGLV 320 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP AV Sbjct: 321 LFALLMATRTSCTGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRELNGLMKVMPFLAV 380 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGF+ E V + F++ + V+A+ +V++A+Y L + K Sbjct: 381 GYVIAGLANLGLPGLSGFVAEMTVFVGSFEHPDVFHRACTVIATMSIVITAVYILRVVGK 440 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTL 489 +++G + + +L D + ER V + V G+ P + DT S + I+ ++ L Sbjct: 441 ILYGTCRNPEHLKLTDATWDERFAVICLIVCVAGLGLAPWWVSDTISFSVEPIVSHFNL 499 >gi|78184506|ref|YP_376941.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. CC9902] gi|78168800|gb|ABB25897.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus sp. CC9902] Length = 504 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 155/439 (35%), Positives = 246/439 (56%), Gaps = 13/439 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD +S Q++E W+ + LGVDG+S LVVL+ +T + +SW +I+ R Sbjct: 62 FDPTQSGLQLVERVSWVPSIGLEWSLGVDGLSAPLVVLSGLVTLLSVWASW-TIERKSRL 120 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV S FLS D LLF++ +E L+P++++I +WGG R YAA KF LYT Sbjct: 121 YFALLLVQASAQGLVFLSQDFLLFFLAWELELVPVYLLIAIWGGQNRQYAATKFILYTAV 180 Query: 174 GSIFMLFAIVVMCWEKK--TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 S+ +L + + + T ++ +L + S S ++ F F +K+PMFP HTW Sbjct: 181 ASLLILISGLALALSGDVFTLNLSELISRSAG-GSFGLLCYLGFLVGFGVKLPMFPLHTW 239 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A S+ LAG++LKMGGY +RF + + P A Q AP + L ++ I+Y +L Sbjct: 240 LPDAHGEANAPVSMLLAGVLLKMGGYALLRFNVQMLPEAHQTLAPALVILGIVNIVYGAL 299 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 + Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF GV Y Sbjct: 300 NAFAQDNVKRRIACSSVSHMGFVLVGIGAVDALGISGAMLQMVSHGLIAAAMFFVTGVFY 359 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS----- 406 +R T I GGL +P + ++A++ LPG SGFI E V + + Sbjct: 360 ERTKTLSIPNMGGLAKALPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEAFTST 419 Query: 407 --NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + +LA+ G+VL+ +Y L + R++ FG + + ++D+ RE + + V T+ Sbjct: 420 FRSITVLLAAIGLVLTPMYLLSMCRRIFFG-PRIPALASVEDMRPRELVIGLSLLVPTLV 478 Query: 465 FGIYPVPIRDTFSVPLSSI 483 GI+P D + +I Sbjct: 479 IGIWPRIAMDLYEASTDAI 497 >gi|33634616|emb|CAE20602.1| putative NADH Dehydrogenase (complex I) subunit (chain 4) [Prochlorococcus marinus str. MIT 9313] Length = 492 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 156/455 (34%), Positives = 254/455 (55%), Gaps = 14/455 (3%) Query: 43 INFIFSLFVWS-VFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCI 100 ++F+ L V+S +FD Q++E WI + + LG DG+S LVVL+ +T + Sbjct: 25 VDFVLMLVVFSRMFDGQDGGLQLVERVSWIPFIGLEWSLGADGLSAPLVVLSGLITLLAV 84 Query: 101 LSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER 160 +SWK +Q R Y LV S FLS D LLF++ +E L+P++++I +WGGS R Sbjct: 85 AASWK-VQSKTRLYFALLLVQASAQGLVFLSQDFLLFFLAWELELVPVYLLIAIWGGSRR 143 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKK--TSSIIDLYAMSKFPFSIQYWMWIAFFCS 218 +YAA KF LYT S+ +L + + + T ++ +L S S+ ++ F Sbjct: 144 LYAATKFILYTALASLLILISGLALALSGGEFTLNLTELANRSP-EGSLGLLCYLGFLVG 202 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 F +K+PMFP HTWLP+AH +A S+ LAG++LKMGGY +RF + + P A AP + Sbjct: 203 FGVKLPMFPLHTWLPDAHGEANAPVSMLLAGVLLKMGGYALLRFNVQMLPDAHLQLAPAL 262 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 + ++ IIY + + Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL Sbjct: 263 IVIGIVNIIYGAFNAFAQDNVKRRIACSSVSHMGFVLLGIGAIDALGISGAMLQMISHGL 322 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 +++A+FF G Y+R T I GGL +P + ++A++ LPG SGF+ E V Sbjct: 323 IAAAMFFVTGTFYERTQTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGFVSEITV 382 Query: 399 IMSVFQNSNTVA-------VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 + + + VLA+ G+VL+ +Y L + R+V FG + + ++D++ RE Sbjct: 383 FLGIISQEGFTSIFRVITIVLAAIGLVLTPVYLLSMCRRVFFG-PRIPALAMIEDINPRE 441 Query: 452 RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + + V T+ G +P D + +++ + Sbjct: 442 LTIGLSLIVPTLVIGFWPRVAIDLYEASTNALADR 476 >gi|27885295|gb|AAO26128.1| NADH dehydrogenase subunit 4 [Milleria quinqueflora] gi|27885349|gb|AAO26155.1| NADH dehydrogenase subunit 4 [Rumfordia penninervis] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|27885239|gb|AAO26100.1| NADH dehydrogenase subunit 4 [Galeana pratensis] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|170665264|gb|ACB29172.1| NADH dehydrogenase subunit D [Hyaloseris rubicunda] Length = 500 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFHWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885176|gb|AAO26068.1| NADH dehydrogenase subunit 4 [Bahia absinthifolia] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W I + R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWP-ITRDSRLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFLAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|27885205|gb|AAO26083.1| NADH dehydrogenase subunit 4 [Desmanthodium fruticosum] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLIPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|227542305|ref|ZP_03972354.1| NADH dehydrogenase subunit M [Corynebacterium glucuronolyticum ATCC 51866] gi|227181905|gb|EEI62877.1| NADH dehydrogenase subunit M [Corynebacterium glucuronolyticum ATCC 51866] Length = 521 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 263/459 (57%), Gaps = 8/459 (1%) Query: 21 LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH-L 79 LF ++L G VA S + ++ + + FD G + Q WI +Y+ L Sbjct: 16 LFMTFLRSGAARV--VAFVASLVPLALAIVMVAGFDPG-AGMQYTVEIPWIPALGAYYAL 72 Query: 80 GVDGISILLVVLTTFLTPFCILSS----WKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 GVDGI++ +V+LT LTP IL S +++ Q ++ L +E + I F S D+L Sbjct: 73 GVDGIALAMVLLTAILTPIVILYSGTEHYRADQMREHAFLGFVLAIEGLSIFVFSSTDVL 132 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 LFY+FFEA+LIPMF +IG +GG R YAA KF LY+ + ML AI+ + + ++ Sbjct: 133 LFYLFFEATLIPMFFLIGGFGGENRRYAAIKFLLYSLGSGLLMLAAIIGVYIVGDGTFLL 192 Query: 196 DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 + ++ W++ F +F +K PM PFHTWLP+A G+V + IM K+G Sbjct: 193 SDLQDADLGGTVGMWLFAGFMIAFIVKAPMVPFHTWLPDAAENTTPGGAVMMVAIMDKIG 252 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 +G IRF + LFP A++YF V+ +L++I++I+ +L ++ QT++ + +AY+S++H G++ Sbjct: 253 TFGMIRFAMCLFPEATEYFRNVMIWLAVISVIWGALAALAQTNLMRFVAYTSVSHFGFIV 312 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 +G+F+ ++ V A M +HGL ++ LF VG + R T DI A+GG+ P Sbjct: 313 LGMFAVNETAVSAASLYMFNHGLSTAMLFLVVGYMIKRRSTADIHAFGGVQKVAPLLGGY 372 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 +++ ++ + LPG + F+ EF VI F + A +A+ +VL+A Y + +Y+ + G Sbjct: 373 LLIALLSAVALPGLAPFVSEFGVIAGTFNGAPWAAGIAAIAMVLAACYIMRVYKTTMTGE 432 Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 E ++ + DL+ ER ++ P+ VL + FG+YP P+ + Sbjct: 433 PGDEVIRTMPDLTHPERWVLAPLIVLLIVFGVYPGPLTN 471 >gi|27885355|gb|AAO26158.1| NADH dehydrogenase subunit 4 [Smallanthus microcephalus] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|116070828|ref|ZP_01468097.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. BL107] gi|116066233|gb|EAU71990.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. BL107] Length = 511 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 159/459 (34%), Positives = 255/459 (55%), Gaps = 14/459 (3%) Query: 36 VALGISTINFIFSLFVWSV-FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTT 93 VA G+ + + + V + FD +S Q++E W+ + LGVDG+S LVVL+ Sbjct: 49 VAFGVLLADLLLMMGVLATQFDPTQSGLQLVERVSWVPAIGLEWSLGVDGLSAPLVVLSG 108 Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 +T + +SW +I+ R Y LV S FLS D LLF++ +E L+P++++I Sbjct: 109 LVTLLSVWASW-TIERKSRLYFALLLVQASAQGLVFLSQDFLLFFLAWELELVPVYLLIA 167 Query: 154 VWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK--TSSIIDLYAMSKFPFSIQYWM 211 +WGG R YAA KF LYT S+ +L + + + T ++ +L + S S Sbjct: 168 IWGGQNRQYAATKFILYTAVASLLILISGLALALSGDVFTLNLSELISRSAG-GSFGLLC 226 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 ++ F F +K+PMFP HTWLP+AH +A S+ LAG++LKMGGY +RF + + P A Sbjct: 227 YLGFLVGFGVKLPMFPLHTWLPDAHGEANAPVSMLLAGVLLKMGGYALLRFNVQMLPEAH 286 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 Q AP + L ++ I+Y +L + Q ++K+ IA SS++HMG+V +GI + G+ GAM Sbjct: 287 QTLAPALVILGIVNIVYGALNAFAQDNVKRRIACSSVSHMGFVLVGIGAVDALGISGAML 346 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 QM+SHGL+++A+FF GV Y+R T I GGL +P + ++A++ LPG SG Sbjct: 347 QMVSHGLIAAAMFFVTGVFYERTKTLSIPNMGGLAKALPITFAFFLASSLASLALPGMSG 406 Query: 392 FIGEFLVIMSVFQNS-------NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL 444 FI E V + + + +LA+ G+VL+ +Y L + R++ FG + + + Sbjct: 407 FISEITVFLGITSQEAFTSTFRSITVLLAAIGLVLTPMYLLSMCRRIFFG-PRIPALASV 465 Query: 445 KDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 +D+ RE + + V T+ GI+P D + +I Sbjct: 466 EDMRPRELVIGLSLLVPTLVIGIWPRIAMDLYEASTDAI 504 >gi|290486869|gb|ADD29819.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Berberidopsis corallina] Length = 500 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 161/495 (32%), Positives = 271/495 (54%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVLPISAGSLIFFLPHRGNKIIRWYTICICILELLLTTYAFCYH-FQFDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WID+F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LAEDYKWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ + +P ++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVGLYGSNEPTLNFETSTNQSYPVPLEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+L S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGTMQIIYAALTSPGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G+ YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGICSITDTGLNGAILQIISHGFIGAALFFLAGMSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYLLMPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +YSL + R++ +G D RE + I + + GIYP + Sbjct: 423 AIGMILTPIYSLSMSRQMFYGYKLFNAPNSYFFDSGPRELFVSISIFLPVIGIGIYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + +I+ NY Sbjct: 483 LSLSVDKVEAILSNY 497 >gi|27885235|gb|AAO26098.1| NADH dehydrogenase subunit 4 [Flaveria ramosissima] gi|27885255|gb|AAO26108.1| NADH dehydrogenase subunit 4 [Hymenopappus filifolius var. filifolius] gi|27885267|gb|AAO26114.1| NADH dehydrogenase subunit 4 [Jaumea carnosa] gi|27885335|gb|AAO26148.1| NADH dehydrogenase subunit 4 [Pseudoclappia arenaria] gi|27885382|gb|AAO26172.1| NADH dehydrogenase subunit 4 [Varilla mexicana] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|195953129|ref|YP_002121419.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hydrogenobaculum sp. Y04AAS1] gi|195932741|gb|ACG57441.1| proton-translocating NADH-quinone oxidoreductase, chain M [Hydrogenobaculum sp. Y04AAS1] Length = 501 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 162/454 (35%), Positives = 264/454 (58%), Gaps = 9/454 (1%) Query: 41 STINFIFSLFVWSVFDKGR-SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPF 98 S + F+ SL+ D S+ + E Y I SY +GVDG+S + +L+TF++ Sbjct: 41 SLVTFLISLYTLKFLDFSHLSNIYLYENYPIIKELGISYVVGVDGLSEVFYILSTFISFL 100 Query: 99 CILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG 156 I S K IQ +EY FL+ + +IG F + D++LFYIF+E +L+PM +IGVWG Sbjct: 101 AIAWSVKDIQIKSRLKEYYSMFLLTTTFLIGVFTAWDLILFYIFYELTLVPMIFVIGVWG 160 Query: 157 GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE--KKTSSIIDLYAMS---KFPFSIQYWM 211 R+Y+AYKFF+Y F S+F+LF I+++ + K+T Y P + Q ++ Sbjct: 161 YKLRLYSAYKFFIYIFISSLFLLFGIMILSADSFKQTGHFNAFYPTLVHLHLPLNEQIFL 220 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 ++ FF +FA+K P+ PFHTWLP+AH +APTAGSV LA I+LKMG Y +RF + LFP A+ Sbjct: 221 FLLFFIAFAVKTPLVPFHTWLPDAHGEAPTAGSVVLAAILLKMGSYAFLRFNIGLFPEAA 280 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 ++ V+ F+ ++ IIYAS +++ Q +IK+ +AYSS++HMG++ +F G ++ Sbjct: 281 KHLWLVMVFIGILTIIYASWMTIAQNNIKRFVAYSSVSHMGFIVAAMFMLNFQGFRASVL 340 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 +M +HG S++LF G IY+RLH+ + G V MP +++++ + + MGLPG S Sbjct: 341 EMAAHGFSSASLFMIAGFIYNRLHSFNTKTIAGSVRYMPIFSILVALTGFSAMGLPGGSS 400 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 F G+FL I+S ++S +A++ SA+Y L+ R + D+ + Sbjct: 401 FWGKFLTIVSAKEHSLDLALIVIVSAFFSAIYMLYFLRNLFLEGKTEGSFLIFTDIRGIK 460 Query: 452 RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 ++ + VL G++P + F +S+++ Sbjct: 461 LTVMLSLVVLMFTIGLFPFLFFNIFDASISNMLH 494 >gi|27885229|gb|AAO26095.1| NADH dehydrogenase subunit 4 [Eriophyllum congdonii] Length = 417 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLAMLRQMFYG 391 >gi|27885387|gb|AAO26174.1| NADH dehydrogenase subunit 4 [Bahiopsis tomentosa] Length = 417 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I F +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFLIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMVVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|27885389|gb|AAO26175.1| NADH dehydrogenase subunit 4 [Villanova achilleoides] Length = 417 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|308183382|ref|YP_003927509.1| NADH dehydrogenase subunit M [Helicobacter pylori PeCan4] gi|308065567|gb|ADO07459.1| NADH dehydrogenase subunit M [Helicobacter pylori PeCan4] Length = 512 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDVQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E I +YH+GVDGI++ L++L + C++ ++E+ +++ I L+LE + Sbjct: 64 EMKELIYQIGVNYHVGVDGIALFLLLLNAIVVLLCVIY----VKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANDYGMMSFDILDWYQLN-FSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L I+Y ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIVYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF VG++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLVGILEERTSSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSVAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKTGNNQISVFEDLNARE 453 >gi|27885323|gb|AAO26142.1| NADH dehydrogenase subunit 4 [Peucephyllum schottii] Length = 417 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFLAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|27885212|gb|AAO26087.1| NADH dehydrogenase subunit 4 [Dyscritothamnus mirandae] Length = 417 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLFMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|27885303|gb|AAO26132.1| NADH dehydrogenase subunit 4 [Neurolaena lobata] Length = 417 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMLRQMFYG 391 >gi|205277653|gb|ACI02102.1| NADH dehydrogenase subunit 4 [Isoetes engelmannii] gi|209916093|gb|ACI95888.1| NADH dehydrogenase subunit 4 [Isoetes engelmannii] Length = 495 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 167/418 (39%), Positives = 232/418 (55%), Gaps = 3/418 (0%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTF 94 + L S I + F FD + Q +E W+ D ++ +G+DGI VV TTF Sbjct: 40 IGLCTSLITSSYPPFFRVRFDNSTAKPQPVETIRWLPDPNINFSIGIDGIPSFFVVSTTF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 P W SI+ +EY IAF + ES++I D ++F E+ LI M +IIG+ Sbjct: 100 PIPIRTPVGWSSIESYEKEYTIAFSIRESIMIAVPRMPDPSPPHVFSESVLISMSIIIGI 159 Query: 155 WGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 G +R I AAY+FF YT GS+FML AI + T+ + + + F Q I Sbjct: 160 RGSRQRKIKAAYQFFSYTSLGSVFMLSAISPISSGTGTTDV-QILLTTGFSERRQISPRI 218 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 A S +K+PM P H A+V+APTAG V AGI K+G +G RF +P P+A+ + Sbjct: 219 ASPASPPVKVPMVPVHIRSSEAYVEAPTAGFVISAGIPSKLGTHGFSRFNIPTRPVATPH 278 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 P I+ S+IAII+ ++ Q D+KK IAYSS+AHM + TIG+FS G+EG++ M Sbjct: 279 STPFIYTPSVIAIIHTPPTTIRQIDLKKNIAYSSVAHMNFGTIGMFSLNVQGIEGSILLM 338 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LSHGLVSSALF CVG +YDR TR + +GGLV + FT AN LPGTS I Sbjct: 339 LSHGLVSSALFLCVGALYDRHRTRLVKHHGGLVSTTLIPLTIPSSFTPANTSLPGTSSPI 398 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 GE V++ + ++ VA LA+ G++L A + Y +VV G K Q+ D + RE Sbjct: 399 GESPVLVGASERNSLVAALAALGMILGAAHLPRPYNRVVPGNFKPNSPQKFSDSNRRE 456 >gi|78212564|ref|YP_381343.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. CC9605] gi|78197023|gb|ABB34788.1| proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus sp. CC9605] Length = 511 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 155/425 (36%), Positives = 239/425 (56%), Gaps = 13/425 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD Q++E +W+ + LGVDG+S LVVL+ +T + +SW S+Q R Sbjct: 69 FDPSNEGLQLVERVNWLPALGLEWSLGVDGLSAPLVVLSGLVTFLSVAASW-SVQRKSRL 127 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV S FLS D LLF++ +E L+P++++I +WGG R YAA KF LYT Sbjct: 128 YFALMLVQASAQGLVFLSQDFLLFFLAWELELVPVYLLIAIWGGQNRQYAATKFILYTAL 187 Query: 174 GSIFMLFAIVVMCWEKKTSS--IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 S+ +L + + + T + + +L A S S ++ F F +K+PMFP HTW Sbjct: 188 ASLLILISGLALALSGDTFTFNLTELAARSPG-GSFGLLCYVGFLIGFGVKLPMFPLHTW 246 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A S+ LAG++LKMGGY +RF + + P A AP + L ++ I+Y +L Sbjct: 247 LPDAHGEANAPVSMLLAGVLLKMGGYALLRFNVQMLPEAHATLAPALVILGIVNIVYGAL 306 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 + Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF GV Y Sbjct: 307 NAFAQDNVKRRIACSSVSHMGFVLVGIGAVDALGISGAMLQMVSHGLIAAAMFFVTGVFY 366 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R T I GGL +P + ++A++ LPG SGFI E V + + +V Sbjct: 367 ERTKTLSIPNMGGLAKALPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEAFTSV 426 Query: 412 -------LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 LA+ G+VL+ +Y L + R+V FG + + + D+ RE + + V T+ Sbjct: 427 FRSITVLLAAIGLVLTPIYLLSMCRRVFFG-PRIPALASVADMRPRELVIGLSLLVPTLV 485 Query: 465 FGIYP 469 GI+P Sbjct: 486 IGIWP 490 >gi|27885199|gb|AAO26080.1| NADH dehydrogenase subunit 4 [Dahlia coccinea] Length = 417 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQPYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|170665290|gb|ACB29185.1| NADH dehydrogenase subunit D [Oncosiphon grandiflorum] Length = 500 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 158/478 (33%), Positives = 266/478 (55%), Gaps = 15/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+++ Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVDDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYP 479 >gi|170665196|gb|ACB29138.1| NADH dehydrogenase subunit D [Chaetanthera pentacaenoides] Length = 500 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 153/442 (34%), Positives = 255/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R+ + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRAMRWYTICICMLELVLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + L +DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLAIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLXLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + +T+ + +P +++ +I FF +FA+K P+ P HT LP+ H +A Sbjct: 182 VLGVGLYGSNETTFNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTRLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPRAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGISSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIINSQKYLLIPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMLRQMFYG 443 >gi|27885225|gb|AAO26093.1| NADH dehydrogenase subunit 4 [Eriophyllum staechadifolium] Length = 417 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMLRQMFYG 391 >gi|156598008|gb|ABU85270.1| NADH-plastoquinone oxidoreductase subunit 4 [Cycas micronesica] Length = 500 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 160/463 (34%), Positives = 257/463 (55%), Gaps = 17/463 (3%) Query: 2 NLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 +LP+L+I+ LP G + LF G LGI + F+ + + F Sbjct: 3 DLPWLTIIVILPISAGSSIPLFPHR---GNNIIRWYTLGICLLEFLLMTYTFRYHFHFDD 59 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q+ E Y WID + LG+DG+SI + LT+F+T L++W + N R + Sbjct: 60 PLIQLEEDYEWIDLIDLHWRLGIDGLSIGPISLTSFVTTLATLAAWP-VTRNPRLFYFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S +G F S D+LLF++ +E LIP+++++ +WGG R+Y+A KF LYT GSIF+ Sbjct: 119 LAMYSGQVGLFASRDILLFFLMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFI 178 Query: 179 LFAIVVMCWEKKTSSIID--LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 M +D + A +P ++ ++ FF + AIK+P+ P HTWLP+ H Sbjct: 179 SMGASSMGLYGFDGPTLDFEILANKYYPVVLEIVFYLGFFIAHAIKLPILPLHTWLPDTH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI LKMGGYG IR + L P A F+P + + + IIYA+L S+ Q Sbjct: 239 GEAHYSTCMLLAGIPLKMGGYGLIRINMELLPHAHSLFSPWLVIVGAVQIIYAALTSLSQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSS++HMG+V +GI S + + GA+ QM+SHGL+ +ALFF G YD + T Sbjct: 299 RNLKRRIAYSSVSHMGFVIVGIGSMADTSLNGAILQMISHGLIGAALFFLAGTSYDGIRT 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TV 409 + GG+ M + + + F+MA++ LPG SGF+ E +V++ + + + Sbjct: 359 LFLDGIGGMAIPMSKISTMFSSFSMASLALPGMSGFVAESMVLLGIITSRKYSLTFQIVI 418 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRE 451 A + + G++L+ ++ L + R++ +G + LKD RE Sbjct: 419 AAIMAIGMILTPIHLLSMLRRMFYGYKFLNVLNPYLKDSGPRE 461 >gi|290486879|gb|ADD29824.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Gunnera manicata] Length = 502 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 152/436 (34%), Positives = 249/436 (57%), Gaps = 12/436 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI++F + LG+DG+SI ++LT F+T LS+W + + R + L + Sbjct: 65 QLSEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLSAWP-VTRDPRLFYFLMLAM 123 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 124 YSGQIGSFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 183 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + K + + A +P +++ +I F +FA+K+P+ P HTWLP+ H +A Sbjct: 184 VLGIGLYGSNKPTLNFETSANQSYPVALEIIFYIGFLIAFAVKLPIIPLHTWLPDTHGEA 243 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S Q ++ Sbjct: 244 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGTVQIIYAASTSPGQRNL 303 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 304 KKRIAYSSVSHMGFLIIGIGSLTDTGLNGAILQIISHGFIGAALFFLSGTSYDRIRLVYL 363 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 364 DEMGGIAIEMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYLLIPKILITFV 423 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 424 MAIGMILTPIYSLSMSRQMFYGYKLFNAPNSYFFDFGPRELFVSIFIFLPVIGIGIYPDF 483 Query: 472 IRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 484 VLSLSVDKVEAILSNY 499 >gi|308064050|gb|ADO05937.1| NADH dehydrogenase subunit M [Helicobacter pylori Sat464] Length = 512 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDVQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E I +YH+GVDGI++ L++L + C++ ++E+ +++ I L+LE + Sbjct: 64 EMKELIYQIGVNYHVGVDGIALFLLLLNAIVVLLCVIY----VKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANNYGMMSFDILDWYQLN-FSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLAGILEERTSSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKAGSNQISVFEDLNARE 453 >gi|317180998|dbj|BAJ58784.1| NADH dehydrogenase subunit M [Helicobacter pylori F32] Length = 512 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 165/455 (36%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSTLLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQKVGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + +YH+GVDGI++ L++L + C++ ++E+ +++ I L+LE + Sbjct: 64 EMKELVYQIGVNYHVGVDGIALFLLLLNAIVVLLCVIY----VKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANNYGMMSFDILDWYQLN-FSSEVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLAGILEERTSSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLASYKDVFFGNLKTGNNQISVFEDLNARE 453 >gi|27885339|gb|AAO26150.1| NADH dehydrogenase subunit 4 [Raillardella argentea] Length = 417 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 140/382 (36%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETLVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ A+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNEAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFI 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGIILTPIYLLSMLRQMFYG 391 >gi|156573722|gb|ABU85193.1| NADH-plastoquinone oxidoreductase subunit 4 [Anethum graveolens] Length = 500 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 158/477 (33%), Positives = 266/477 (55%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP VI F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVILPIFAGSVIFFLPHRGNRVIRWYTICICILELLLTTYAFCYH-FQLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E + WI +F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LVEDFKWISFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGLFASRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + T ++ + +P +++ ++I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVGLYGSTEPTLNFATLVNQSYPAALEIILYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L A F+P + + I IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLSRAHSIFSPWLVIVGTIQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFILIGIGSINDTGLNGAILQIVSHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYLLISKLGITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 423 AIGMILTPIYSLSMLRQMFYGYKLFNAPNSYVFDSGPRELFVSIAIFLPVIGIGMYP 479 >gi|27885231|gb|AAO26096.1| NADH dehydrogenase subunit 4 [Coespeletia timotensis] Length = 417 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFILMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|260912217|ref|ZP_05918769.1| proton-translocating NADH-quinone oxidoreductase [Prevotella sp. oral taxon 472 str. F0295] gi|260633651|gb|EEX51789.1| proton-translocating NADH-quinone oxidoreductase [Prevotella sp. oral taxon 472 str. F0295] Length = 501 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 152/445 (34%), Positives = 261/445 (58%), Gaps = 21/445 (4%) Query: 56 DKGRSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 D G + + +Y +D+F +Y +GVDGIS+++++L++ + +SW+ ++ Sbjct: 54 DAGNTDAMLFQYT--VDWFKPLNIAYAVGVDGISVVMLLLSSIIVFTGTFASWQ-LKPLT 110 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 +EY + F +L V G F+S+D+ ++F+E +LIPM+++IGVWG ++ Y+A K L Sbjct: 111 KEYFLWFTLLSIGVYGFFISIDLFTMFMFYEVALIPMYLLIGVWGSGKKEYSAMKLTLML 170 Query: 172 FFGSIFMLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 GS ++ I+ + + T +I++L A+ P S+Q ++ F F + +FPFH Sbjct: 171 MGGSALLIIGIIGIYFFSGATTMNILELQALHNIPESVQKVLFPFVFIGFGVLGALFPFH 230 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TW P+ H APTA S+ AG+++K+GGYGC R + L P A+ + + L+ I+++Y Sbjct: 231 TWSPDGHASAPTAVSMLHAGVLMKLGGYGCFRIAIVLLPEAAHQLSWIFIILTTISVVYG 290 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 + + VQTD+K + AYSS++H G V + ++ GA+ QMLSHGL+++ F +G+ Sbjct: 291 AFSACVQTDLKYINAYSSVSHCGLVLFALLMMTQTSCTGAILQMLSHGLMTALFFALIGM 350 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-- 407 IY R HTRDI GGL+ MP +V ++ +AN+GLPG SGF+ E + + FQN++ Sbjct: 351 IYGRTHTRDIRQLGGLMKIMPFLSVGYVIAGLANLGLPGFSGFVAEMTIFVGSFQNNDVF 410 Query: 408 --TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER----CMVYPIAVL 461 T ++A +V++A+Y L + K++FG +QL D + ER C+++ +A L Sbjct: 411 HRTATIIACTAIVITAVYILRVVGKILFGKVADPHYEQLTDATWDERFAVGCLIFSVAGL 470 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIEN 486 G+ P+ + S L II++ Sbjct: 471 ----GLAPLWASNIISDTLGPIIDH 491 >gi|27885182|gb|AAO26071.1| NADH dehydrogenase subunit 4 [Calea megacephala] Length = 417 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMSKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMLRQMFYG 391 >gi|197107568|gb|ACH42364.1| NADH dehydrogenase subunit 4 [Cladostephus spongiosus] Length = 243 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 133/243 (54%), Positives = 177/243 (72%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 ++LTT + P CIL+SW SIQ N + Y+I FLV+E ++ F LD+ FYIFFE LIPM Sbjct: 1 ILLTTLIFPICILASWYSIQTNLKFYLICFLVMELXLLLVFTCLDLFFFYIFFETVLIPM 60 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG+WG +R + A Y FFLYT GS+FML I+ + +++ I L ++ FPF Sbjct: 61 FLVIGLWGSRQRKVRAGYLFFLYTLLGSLFMLIGILYIYRLVGSTNYIVL-SLIDFPFHD 119 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+ FF SFA+K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 120 QKWLWLFFFASFAVKVPMLPLHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 179 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 PLAS Y++P ++ LSLI ++YASL ++ QTD K+LIAY+S+AHM VTIGIF+G GVE Sbjct: 180 PLASIYYSPFVYSLSLIGVVYASLTAIRQTDFKRLIAYTSVAHMNLVTIGIFTGTVIGVE 239 Query: 328 GAM 330 A+ Sbjct: 240 AAI 242 >gi|134103318|ref|YP_001108979.1| NADH dehydrogenase I chain M [Saccharopolyspora erythraea NRRL 2338] gi|291004463|ref|ZP_06562436.1| NADH dehydrogenase I chain M [Saccharopolyspora erythraea NRRL 2338] gi|133915941|emb|CAM06054.1| NADH dehydrogenase I chain M [Saccharopolyspora erythraea NRRL 2338] Length = 525 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 161/498 (32%), Positives = 264/498 (53%), Gaps = 47/498 (9%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 AL S + + + W +D + Q+ WI F + GVDGI++++V + L Sbjct: 32 ALAFSLVEVVLAAVAWLEYDPAGARMQLTSSVPWIPAFDINLSFGVDGIALVMVAVIALL 91 Query: 96 TPFCILSSWKSIQENFREY--MIAFLVLE-SMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 P + SW R + + L+LE ++ +G F + D+ LFY+ FE LIPM+ +I Sbjct: 92 LPLVLGYSWGEKLPAGRTHGGFFSLLLLEQALTVGVFAATDVFLFYVLFEIMLIPMYFLI 151 Query: 153 GVWGGSERIYAAYKFFLYTFFGSIFMLFAIV-------------VMCWEKKTSSIIDLYA 199 G +GG +R YAA KFFLY+F G + ML + + W K + D Sbjct: 152 GGYGGEQRTYAAVKFFLYSFLGGLIMLASAIGAYVYSAQVLGQGTFDWAKLVPVLADA-- 209 Query: 200 MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 P +Q W+++ FF +FAIK P+ PFHTWLP+A QAP +V + G++ K+G +G Sbjct: 210 ----PTDVQVWIFLGFFTAFAIKAPLVPFHTWLPDAAAQAPIGVAVIVVGVLDKVGTFGF 265 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +R+ LPL P AS+ P++ L+++ ++Y SL + Q D+K+ IAY SIAH G++ +GIF Sbjct: 266 LRYSLPLTPEASKLLTPLVLVLAVLGVLYGSLQAFGQDDLKRFIAYVSIAHFGFIALGIF 325 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 + GA+ M++H + + L +G++ R + I YGG+ P A V++V Sbjct: 326 AFTSQSQVGAVSYMINHSIATGMLILAIGMVISRGGSTRIADYGGMARLTPLLAGVLLVA 385 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 ++ + LPGT+ FI EFLV++ F VLA+ G+VL+A+Y L +Y++V+ G + + Sbjct: 386 GLSTLSLPGTNSFISEFLVLIGAFPTQPVYTVLATVGMVLAAVYVLRIYQQVMQGPVRGD 445 Query: 440 KV--------------------QQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 + + + DL LRE+ ++ P+ VL + G YP P+ D Sbjct: 446 ALLASAAGPGAVGDPELPEKHRRGITDLDLREKAVLAPLIVLVLALGFYPKPVLDVIGPS 505 Query: 480 LSSIIENYTLKTGYSDSV 497 + + + + G +D V Sbjct: 506 VGATMS----EVGVTDPV 519 >gi|329944214|ref|ZP_08292473.1| proton-translocating NADH-quinone oxidoreductase, chain M [Actinomyces sp. oral taxon 170 str. F0386] gi|328530944|gb|EGF57800.1| proton-translocating NADH-quinone oxidoreductase, chain M [Actinomyces sp. oral taxon 170 str. F0386] Length = 534 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 169/498 (33%), Positives = 271/498 (54%), Gaps = 19/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW--SVFDKGR 59 +LP L+++ +P G ++ L R A+G+ + +L +W S FD G Sbjct: 7 SLPVLTVMAIVPLAGALLLWLVPPL----RRLHARAVGLVFSLAVLALGLWALSAFDLGH 62 Query: 60 S-SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + + Q+ WI S+ LGV+G+ + +V+L F+TP +L+SW + + + Sbjct: 63 AGTIQLAHTQPWIPAIGASWALGVNGLGLAMVLLAAFVTPLVLLASWGEVPADRQGLFTG 122 Query: 118 F-LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L LE V+ F + D+LLFY+ FEA LIP++ +IG +GG R AA KF LY+ G + Sbjct: 123 LVLALEFFVVVIFSARDLLLFYLCFEAMLIPVYFLIGCFGGQNRQRAALKFLLYSLAGGL 182 Query: 177 FMLFAIVVM----CWEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 ML ++ + + S +ID A + +W+++ FF +FAIK P+ P HTW Sbjct: 183 VMLIGVIAVSLHSAKDGSPSFLIDSVAANLHVSTGAGHWIFLTFFIAFAIKAPLVPVHTW 242 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+ QA SV L GI+ K+G +G I +LP+FP AS++ APV+ L++++IIY L Sbjct: 243 LPDTAEQATPGTSVLLIGILDKIGTFGMITLVLPIFPEASRWAAPVVLVLAVVSIIYGGL 302 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ Q ++ +LI+Y+S++H G++ +GIF G + GAM M++HGL + L+ G + Sbjct: 303 AAIAQDNLYRLISYTSVSHFGFMVLGIFIGNQVAANGAMVYMVAHGLSIAGLYLVTGFMA 362 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 R T I GG+ MP A +V +A++ LPG SGF+ E++V+ F S + Sbjct: 363 RRTGTVAISELGGIARVMPLVAGTFLVCGLASIALPGLSGFVPEWMVLTGTFSVSLALGG 422 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 A GV+++A+Y L Y++V G E+V DL RER +V PI + G+ P Sbjct: 423 AAVVGVIIAAVYMLLPYQRVFTGAPAPERVGS-PDLDGRERLVVVPIIAAMLALGLAPA- 480 Query: 472 IRDTFSVPLSSIIENYTL 489 T + L + TL Sbjct: 481 ---TLTHALDDVARQVTL 495 >gi|170665298|gb|ACB29189.1| NADH dehydrogenase subunit D [Pasaccardoa grantii] Length = 500 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 151/442 (34%), Positives = 254/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP VI F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSVIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGITSLTDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ + F++A++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAILLPKIFTMFSSFSIASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMSRQMFYG 443 >gi|27885214|gb|AAO26088.1| NADH dehydrogenase subunit 4 [Thymophylla tenuiloba] Length = 417 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 231/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WID+F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWIDFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I F +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIVFYIGFLIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGTITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|170665236|gb|ACB29158.1| NADH dehydrogenase subunit D [Gerbera serrata] Length = 500 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 271/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFTGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFCPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|27885180|gb|AAO26070.1| NADH dehydrogenase subunit 4 [Blepharispermum zanguebaricum] Length = 417 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTLQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|308062556|gb|ADO04444.1| NADH dehydrogenase subunit M [Helicobacter pylori Cuz20] Length = 512 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 165/455 (36%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E I +YH+GVDGI++ L++L + C++ ++E+ +++ I L+LE + Sbjct: 64 EMKELIYQIGVNYHVGVDGIALFLLLLNAIVVLLCVIY----VKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANNYGMMSFDILDWYQLN-FSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L I+Y ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIVYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLAGILEERTSSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPIFATFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKAGSNQISVFEDLNARE 453 >gi|297380452|gb|ADI35339.1| proton-translocating NADH-quinone oxidoreductase, chain M [Helicobacter pylori v225d] Length = 512 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 265/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDVQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E I +YH+GVDGI++ L++L + C++ ++E+ +++ I L+LE + Sbjct: 64 EMKELIYQIGVNYHVGVDGIALFLLLLNAIVVLLCVIY----VKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANDYGMMSFDILDWYQLN-FSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLAGILEERASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKTGSNQISVFEDLNARE 453 >gi|27885174|gb|AAO26067.1| NADH dehydrogenase subunit 4 [Athroisma gracile subsp. psyllioides] Length = 417 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTLQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|312131460|ref|YP_003998800.1| protoN-translocating NADH-quinone oxidoreductase, chain m [Leadbetterella byssophila DSM 17132] gi|311908006|gb|ADQ18447.1| proton-translocating NADH-quinone oxidoreductase, chain M [Leadbetterella byssophila DSM 17132] Length = 467 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 146/404 (36%), Positives = 254/404 (62%), Gaps = 3/404 (0%) Query: 68 YHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI 126 Y W+ F + LG+DG+S L+ LT ++ IL++ + + + L+ E+ +I Sbjct: 53 YQWLPEFNIGFKLGMDGLSKLMTGLTVVVSALIILATQGLSYDKKSKLLGLILLTEAALI 112 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 G F + D +FY FFE +L+P+++I +WGG + K F+YT FGS+FML A VV+ Sbjct: 113 GVFTAQDGFVFYFFFEIALVPVYLIANLWGGKGISKISLKMFIYTVFGSLFMLVAFVVLY 172 Query: 187 WEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 S + L +S K S+ Y+++ AFF +FAIK P+F FH WLP+A+ ++PT ++ Sbjct: 173 IFSSGSELSALAQVSEKLRPSLNYFLFWAFFLAFAIKSPLFLFHGWLPDAYSKSPTPATM 232 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 L+G++ KMG YG IR LLPL P+ + ++ ++ +L++I +IY S++++ Q+ +K+L+AY Sbjct: 233 LLSGLLSKMGIYGIIRILLPLAPVGWEKYSCLVIYLAVIGLIYGSIIAIRQSHVKRLVAY 292 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS AHMG + G +G++GA FQM++HG + LF+ +I+D+ +R++ GG+ Sbjct: 293 SSFAHMGLMAAAALIGSAAGIQGASFQMVAHGFSAVGLFYVAKIIFDKTGSRNLQDLGGM 352 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P+ A + +V + ++GLP T+GF+GEFL++ SVF + + +LA+ ++L A+Y L Sbjct: 353 AKRAPKLATLFLVVLLGSVGLPLTNGFVGEFLMLKSVFDFNTGLGILATTSIILGAVYLL 412 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 LY+K +FG + + ++D+ +E ++ PIA++ + G+ P Sbjct: 413 RLYQKTMFGPATAF-TENIEDIGAKELMVLVPIALIIIITGVLP 455 >gi|254432155|ref|ZP_05045858.1| NAD(P)H dehydrogenase I, subunit D-2 [Cyanobium sp. PCC 7001] gi|197626608|gb|EDY39167.1| NAD(P)H dehydrogenase I, subunit D-2 [Cyanobium sp. PCC 7001] Length = 537 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 260/478 (54%), Gaps = 16/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+LS++ LP ++ G R +ALG ++ L +S FD G S Sbjct: 31 PWLSLIVLLPAAMALLMPLLPGDGSDPRWPRTLALGTLLVDLGLMLVCFSQRFDGGSSGL 90 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E W+ + LG DG+S LVVL+ +T + +SW +I R Y LV Sbjct: 91 QLVERVSWVPALGLEWSLGADGLSAPLVVLSGLVTLLSVAASW-NINRKTRLYFALMLVQ 149 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S FLS D LLF++ +E L+P++++I +WGG +R YAA KF LYT S+ +L + Sbjct: 150 ASAQGLVFLSQDFLLFFLAWELELVPVYLLIAIWGGQQRQYAATKFILYTATASLLILVS 209 Query: 182 IVVMCWEKKTSS--IIDLYAMSKFPFSI-QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + S + DL A S P + + F F +K+PMFP HTWLP+AH + Sbjct: 210 GLALAFSGDSFSFNLSDLAARS--PGGVFGLLCYAGFLIGFGVKLPMFPLHTWLPDAHGE 267 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A S+ LAG++LKMGGY +RF + + P A AP + L ++ I+Y +L + Q + Sbjct: 268 ANAPVSMLLAGVLLKMGGYALMRFNVQMLPEAHLTLAPALIVLGIVNIVYGALNAFAQDN 327 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF GV Y+R T Sbjct: 328 VKRRIACSSVSHMGFVLLGIGAIDALGMSGAMLQMISHGLIAAAMFFVTGVFYERTKTLS 387 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 I GGL +P + ++A++ LPG SGF+ E V + + N V Sbjct: 388 IPNMGGLAKALPITFAFFLASSLASLALPGMSGFVSEITVFLGITANDGFTTGFRVITIV 447 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 LA+ G+VL+ +Y L L R+V FG + + + D+ RE + + V T+ G +P Sbjct: 448 LAAIGLVLTPVYLLSLCRRVFFG-PRIPALAVVGDMKPRELLIGLTLLVPTLVIGFWP 504 >gi|33860710|ref|NP_892271.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81576495|sp|Q7V3C8|NU4C_PROMP RecName: Full=NAD(P)H-quinone oxidoreductase chain 4; AltName: Full=NAD(P)H dehydrogenase I, chain 4; AltName: Full=NDH-1, chain 4 gi|33633652|emb|CAE18609.1| putative NADH dehydrogenase subunit (chain 4) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 546 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 169/504 (33%), Positives = 278/504 (55%), Gaps = 27/504 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRS 60 + P+LS+ P F+I F G G+ + AL ++ I F+ ++ + + FD Sbjct: 23 DFPWLSVSILFPIGCAFLIPFFPDKGEGKEVRW-FALSVALITFLVTVGSYINGFDINNE 81 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E +W+ + ++ +G DG+S+ L++LT+F+T +L++W F+ + FL Sbjct: 82 DVQLKESINWLPNLGLTWSVGADGMSMPLILLTSFITALAVLAAWPV---KFKPKLFFFL 138 Query: 120 VL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 +L + I F DMLLF++ +E L+P+++++ +WGG R YAA KF +YT SIF Sbjct: 139 ILIMDGGQIAVFAVQDMLLFFLSWELELLPVYLLLAIWGGKNRQYAATKFIIYTAGSSIF 198 Query: 178 MLFAIVVMCWEKKTSSIIDL--YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L A + M + + A F + Q +I +F +K+P+ P HTWLP+A Sbjct: 199 ILLAALAMGFYGTEVPNFEFSHLANQDFGQNFQILCYIGLLIAFGVKLPIVPLHTWLPDA 258 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + LAGI+LKMGGY +RF L P+A F+P++ L ++ IIYA+L S Sbjct: 259 HGEATAPVHMLLAGILLKMGGYALLRFNAQLLPIAHAQFSPLLIVLGVVNIIYAALTSFA 318 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR Sbjct: 319 QRNLKRKIAYSSISHMGFVLIGIGSFSSLGTSGAMLQMVSHGLIGASLFFLVGATYDRTK 378 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-------NT 408 T + GG+ M + ++A++ LPG SGF+ E +V + Sbjct: 379 TLKLDEMGGVGQKMRIMFALWTACSLASLALPGMSGFVSELMVFTGFVTDEVYTLPFRVI 438 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVS--KCEKVQQLKDLSLRE----RCMVYPIAVLT 462 +A LA+ GV+L+ +Y L + R++ FG K + + L D RE C++ PI Sbjct: 439 MASLAAIGVILTPIYLLSMLREIFFGKENPKLTEDKNLIDAEPREIYIIACLLLPI---- 494 Query: 463 VFFGIYPVPIRDTFSVPLSSIIEN 486 + G+YP + +++ ++++++ Sbjct: 495 IGIGLYPRLVTESYLATINNLVDR 518 >gi|260436001|ref|ZP_05789971.1| NAD(P)H-quinone oxidoreductase chain 4-2 [Synechococcus sp. WH 8109] gi|260413875|gb|EEX07171.1| NAD(P)H-quinone oxidoreductase chain 4-2 [Synechococcus sp. WH 8109] Length = 511 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 156/425 (36%), Positives = 238/425 (56%), Gaps = 13/425 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD Q++E W+ + LGVDG+S LVVL+ +T + +SW S+Q R Sbjct: 69 FDPSAEGLQLVERVSWLPALGLEWSLGVDGLSAPLVVLSGLVTFLSVAASW-SVQRKSRL 127 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV S FLS D LLF++ +E L+P++++I +WGG R YAA KF LYT Sbjct: 128 YFALMLVQASAQGLVFLSQDFLLFFLAWELELVPVYLLIAIWGGQNRQYAATKFILYTAL 187 Query: 174 GSIFMLFAIVVMCWEKKTSS--IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 S+ +L + + + T + I +L A S S ++ F F +K+PMFP HTW Sbjct: 188 ASLLILISGLALALSGDTFTFNITELAARSPG-GSFGLLCYVGFLIGFGVKLPMFPLHTW 246 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A S+ LAG++LKMGGY +RF + + P A AP + L ++ I+Y +L Sbjct: 247 LPDAHGEANAPVSMLLAGVLLKMGGYALLRFNVQMLPEAHAILAPALVILGIVNIVYGAL 306 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 + Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF GV Y Sbjct: 307 NAFAQDNVKRRIACSSVSHMGFVLVGIGAVDALGISGAMLQMVSHGLIAAAMFFVTGVFY 366 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R T I GGL +P + ++A++ LPG SGFI E V + + +V Sbjct: 367 ERTKTLSIPNMGGLAKALPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEAFTSV 426 Query: 412 -------LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 LA+ G+VL+ +Y L + R+V FG + + + D+ RE + + V T+ Sbjct: 427 FRSITVLLAAIGLVLTPIYLLSMCRRVFFG-PRIPALASVADMRPRELVIGLSLLVPTLV 485 Query: 465 FGIYP 469 GI+P Sbjct: 486 IGIWP 490 >gi|317182521|dbj|BAJ60305.1| NADH dehydrogenase subunit M [Helicobacter pylori F57] Length = 512 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L V + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSVLLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E I +YH+GVDGI++ L++L + C++ ++E+ +++ I L+LE + Sbjct: 64 EMKELIYQIGVNYHVGVDGIALFLLLLNAIVVLLCVIY----VKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + S I+D + ++ F ++ W++ AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANSYGMMSFDILDWHQLN-FSSEVKTWLFAAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLAGILEERTSSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKAGSNQISVFEDLNARE 453 >gi|332674075|gb|AEE70892.1| NADH-quinone oxidoreductase subunit M [Helicobacter pylori 83] Length = 512 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSTLLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E I +YH+GVDGI++ L++L + C++ ++E+ +++ I L+LE + Sbjct: 64 EMKELIYQIGVNYHVGVDGIALFLLLLNAIVVLLCVIY----VKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANNYGMMSFDILDWYQLN-FSSEVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF VG++ + + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLVGILEEHTSSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKAGNNQISVFEDLNARE 453 >gi|27885237|gb|AAO26099.1| NADH dehydrogenase subunit 4 [Florestina pedata] Length = 417 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPALNFETSVNQSYPVALEIIFYIGFFLAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E ++ + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIIFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|320531896|ref|ZP_08032807.1| putative NADH dehydrogenase subunit M [Actinomyces sp. oral taxon 171 str. F0337] gi|320135887|gb|EFW27924.1| putative NADH dehydrogenase subunit M [Actinomyces sp. oral taxon 171 str. F0337] Length = 534 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 164/467 (35%), Positives = 263/467 (56%), Gaps = 15/467 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW--SVFDKGR 59 +LP L+++ P G ++ L R A+G+ + +L +W S F+ G Sbjct: 7 SLPVLTVMAVTPLAGALLLWLVPPL----RRLHARAVGLVFSLAVLALGLWALSAFELGH 62 Query: 60 S-SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + + Q+ + + WI S+ LGV+G+ + +V+L F+TP +L+SW + + + Sbjct: 63 AGTVQLTDTHSWIPAIGASWALGVNGLGLSMVLLAAFVTPLVLLASWGEVPADRQGLFTG 122 Query: 118 F-LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L LE V+ F + D+LLFY+ FEA LIP++ +IG +GG +R AA KF LY+ G + Sbjct: 123 LVLALEFFVVVIFSARDLLLFYLCFEAMLIPVYFLIGCFGGQKRQRAALKFLLYSLAGGL 182 Query: 177 FMLFAIVVM----CWEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 ML ++ + S +ID A + S +W+++ FF +FAIK P+ P HTW Sbjct: 183 VMLIGVIAVYLHSARNGTPSFLIDSVAANLHVSTSAGHWIFLTFFIAFAIKAPLVPVHTW 242 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+ QA SV L GI+ K+G +G I +LP+FP AS++ APVI L++++IIY L Sbjct: 243 LPDTAEQATPGTSVLLIGILDKIGTFGMITLVLPIFPEASRWAAPVILVLAVVSIIYGGL 302 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ Q ++ +LI+Y+S++H G++ +GIF G + GAM M++HGL + L+ G + Sbjct: 303 AAIAQDNLYRLISYTSVSHFGFMVLGIFIGNQVAANGAMVYMVAHGLSIAGLYLVTGFMA 362 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 R T I GG+ MP A +V +A++ LPG SGF+ E++V+ F S + Sbjct: 363 RRTGTVAISELGGIARVMPLVAGTFLVCGLASIALPGLSGFVPEWMVLTGTFSVSLALGG 422 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 A GVV++A+Y L Y++V G E+V DL RER +V P+ Sbjct: 423 AAVVGVVIAAVYMLLPYQRVFTGAPAPERVGS-SDLDGRERLVVVPV 468 >gi|170665238|gb|ACB29159.1| NADH dehydrogenase subunit D [Gerbera piloselloides] Length = 500 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 271/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFCPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|164597850|ref|YP_001649207.1| NADH dehydrogenase subunit 4 [Oenothera elata subsp. hookeri] gi|172045851|sp|P58419|NU4C_OENEH RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|162423710|emb|CAB67220.3| NADH dehydrogenase subunit 4 [Oenothera elata subsp. hookeri] Length = 507 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 140/382 (36%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI +F Y LG+DG+SI ++LT F+T L++W + + + + L + Sbjct: 63 QLTENYKWIHFFDFYWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRDAQLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFLMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ ++ +P +++ ++ F +FA+K+P+ PFHTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETLANQSYPVALEVIFYVGFLIAFAVKLPIIPFHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHCLFSPGLIIVGAIQIIYAASTSPGQLNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSSI+HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSISHMGFIIIGIGSLSDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLLYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ ++ + +MA++ LPG SGF+ E LV + + +A L Sbjct: 362 DEMGGMAIPLPKLFTMLSILSMASLALPGLSGFVAELLVFFGIITSQKYLLMPKILIAFL 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMLRQMFYG 443 >gi|27885189|gb|AAO26075.1| NADH dehydrogenase subunit 4 [Chamaechaenactis scaposa] Length = 417 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI +F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWIHFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVHQSYPVALEIIFYIGFFLAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|27885307|gb|AAO26134.1| NADH dehydrogenase subunit 4 [Oteiza scandens] Length = 417 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 143/391 (36%), Positives = 235/391 (60%), Gaps = 16/391 (4%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + L GI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLPGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG-----VSKC 438 + G++L+ +Y L + R++ +G +S C Sbjct: 370 MAIGMILTPIYLLSMSRQMFYGYKLFNISNC 400 >gi|261838595|gb|ACX98361.1| NADH-ubiquinone oxidoreductase chain M [Helicobacter pylori 51] Length = 512 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 165/455 (36%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + +YH+GVDGI++ L++L + C++ ++E+ +++ I L+LE + Sbjct: 64 EMKELVYQIGVNYHVGVDGIALFLLLLNAIVVLLCVIY----VKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANNYGMMSFDILDWYQLN-FSSEVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLAGILEERASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSVAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKAGNNQISVFEDLNARE 453 >gi|169142909|ref|YP_001687332.1| NADH dehydrogenase subunit 4 [Oenothera glazioviana] gi|169142994|ref|YP_001687416.1| NADH dehydrogenase subunit 4 [Oenothera biennis] gi|193806248|sp|B0Z509|NU4C_OENBI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|193806249|sp|B0Z593|NU4C_OENGL RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|159793167|gb|ABW98921.1| NADH dehydrogenase subunit 4 [Oenothera biennis] gi|159895521|gb|ABX10086.1| NADH dehydrogenase subunit 4 [Oenothera glazioviana] Length = 500 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 140/382 (36%), Positives = 233/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI +F Y LG+DG+SI ++LT F+T L++W + + + + L + Sbjct: 63 QLTENYKWIHFFDFYWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRDAQLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFLMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ ++ +P +++ ++ F +FA+K+P+ PFHTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETLANQSYPVALEVIFYVGFLIAFAVKLPIIPFHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHCLFSPGLIIVGAIQIIYAASTSPGQLNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSSI+HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSISHMGFIIIGIGSLSDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLLYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ ++ + +MA++ LPG SGF+ E LV + + +A L Sbjct: 362 DEMGGMAIPLPKLFTMLSILSMASLALPGLSGFVAELLVFFGIITSQKYLLMPKILIAFL 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMLRQMFYG 443 >gi|170665220|gb|ACB29150.1| NADH dehydrogenase subunit D [Dinoseris salicifolia] Length = 500 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 162/496 (32%), Positives = 271/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFHWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSCRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|302423963|ref|XP_003009811.1| NADH-ubiquinone oxidoreductase chain 4 [Verticillium albo-atrum VaMs.102] gi|261361701|gb|EEY24129.1| NADH-ubiquinone oxidoreductase chain 4 [Verticillium albo-atrum VaMs.102] Length = 363 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 144/361 (39%), Positives = 231/361 (63%), Gaps = 3/361 (0%) Query: 46 IFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 I S V+ F+ + +Q ++ ++ I F Y LGVDGISI V+LTT + P +L++W Sbjct: 2 ILSFVVYVFFNSSSNQYQFVQEHYNIQSFDIY-LGVDGISIYFVLLTTIIMPIALLANWN 60 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 SI+EN + Y+I L+LE++++ F+ LD+LLFYIFFE+ L P+F++IG++G S ++ A+Y Sbjct: 61 SIKENLKFYLITILLLETLLLAVFMVLDILLFYIFFESILPPLFLLIGLFGSSNKVRASY 120 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPM 225 FFLYT +GS+F+L +I+ M T+ L+ + F +++Q+ ++ F +FA+K P Sbjct: 121 YFFLYTLWGSLFLLLSILTMYSIMGTTDFDALFK-TNFDYTMQFVLFGGVFIAFAVKTPT 179 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + WL AHV++P GS+ LAGI+LK+ YG R +LP+ P A+ +++ + +I Sbjct: 180 IFLNNWLLKAHVESPLGGSIILAGIVLKLSLYGIFRLILPILPKATLDLTFIVYTIGVIT 239 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 I+YAS ++ D+K+LIAYSS++H IG FS G+EG++ L+HG VSS LF Sbjct: 240 ILYASFSTLRTVDVKELIAYSSVSHAAVYLIGAFSNTIQGIEGSITLGLAHGFVSSGLFI 299 Query: 346 CV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 C G++YDR TR I+ Y G+ MP ++++ + ++ N G P T FIGEF+ + + Sbjct: 300 CAGGILYDRSGTRMIYLYRGVAQLMPLFSILFFILSLGNCGAPLTLNFIGEFMSLYGGLK 359 Query: 405 N 405 N Sbjct: 360 N 360 >gi|154362187|ref|YP_001122847.2| NADH-plastoquinone oxidoreductase subunit 4 [Phaseolus vulgaris] gi|193806294|sp|A4GGE6|NU4C_PHAVU RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|158187185|gb|ABW22818.1| NADH-plastoquinone oxidoreductase subunit 4 [Phaseolus vulgaris] Length = 498 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 158/497 (31%), Positives = 272/497 (54%), Gaps = 13/497 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+ V LP +G +I+ + G ++ + + I +F + F+ Sbjct: 3 DFPWLTTVVVLPIVGGSLIVLFPHKGNKTIKWYTYCICFIDLLLIAYVFCYH-FELDDPL 61 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI +F Y G+DG+S+ ++LT F+T LS+ +E+ + + L Sbjct: 62 IQLTENYKWIHFFDFYWRFGIDGLSLGPILLTGFITTLATLSAQPVTRES-KLFYFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S +G F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 121 MYSGQLGTFSSRDILLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSVFLLL 180 Query: 181 AIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 I+ M ++ +++ +P +++ ++ F +FA+K P+ P HTWLP+ H + Sbjct: 181 GILGMSLYSSNEPTLNFESLTNQSYPVALEIIFYMGFLIAFAVKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L A F P + L I IIYA+ S+ Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ +GI S ++G+ GA+ Q++SHG + +ALFF G YDRL Sbjct: 301 VKKRIAYSSVSHMGFLILGIGSISETGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + +MA++ LPG SGF+ E +V++ + N + Sbjct: 361 LDEMGGMAIPMPKIFTIFTTLSMASLALPGMSGFVAELIVLLGIITNQKYLLITKILITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 421 VTAIGMILTPIYSLSILRQMFYGYKLFNTPNSYFFDSGPRELFISISILIPVISIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 I + + +I+ N+ Sbjct: 481 FIFSFSADKVEAILSNF 497 >gi|122894043|ref|YP_001004239.1| NADH-plastoquinone oxidoreductase subunit 4 [Ranunculus macranthus] gi|193806233|sp|A1XGU1|NU4C_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|85540857|gb|ABC70809.1| NADH-plastoquinone oxidoreductase subunit 4 [Ranunculus macranthus] Length = 502 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 163/500 (32%), Positives = 273/500 (54%), Gaps = 17/500 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ LP +I F + G ++ + + I + +F + F Sbjct: 3 DFPWLTIIVGLPIFAGTLIFFFPHRGNKIIRWYTICICILELLITAYVFCYH-FQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ + Y WI +F + LG+DG+S+ ++LT F+T L++W +++ R + L Sbjct: 62 IQLEQDYKWIHFFDFHWRLGIDGLSVGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGLFSSRDLLLFFIMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AIVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ M ++ A +P +++ + F +A+K+P+ P HTWLP+ H + Sbjct: 181 GVLGMGLYGSNEPTLNFETSANQPYPVALEILFYFGFLIGYAVKLPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S+ Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLIIVGAIQIIYAASTSLGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ QM+SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGICSITDTGLNGAILQMISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF E +V + + + Sbjct: 361 LDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFAAELVVFFGLITSQKYLLMPKILITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK----DLSLRERCMVYPIAVLTVFFGI 467 + + G++L+ +YSL + R++ +G K K + L D RE + I + + GI Sbjct: 421 VTAIGMILTPIYSLSMLRQMFYGY-KQFKFKSLNSSFFDSGPRELFVSICIFLPVIGIGI 479 Query: 468 YPVPIRDTFSVPLSSIIENY 487 YP + + +I+ NY Sbjct: 480 YPDFVLSLSVDKVEAILSNY 499 >gi|112031016|gb|ABH88128.1| NADH-plastoquinone oxidoreductase subunit 4 [Phaseolus vulgaris] Length = 501 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 158/497 (31%), Positives = 272/497 (54%), Gaps = 13/497 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+ V LP +G +I+ + G ++ + + I +F + F+ Sbjct: 6 DFPWLTTVVVLPIVGGSLIVLFPHKGNKTIKWYTYCICFIDLLLIAYVFCYH-FELDDPL 64 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI +F Y G+DG+S+ ++LT F+T LS+ +E+ + + L Sbjct: 65 IQLTENYKWIHFFDFYWRFGIDGLSLGPILLTGFITTLATLSAQPVTRES-KLFYFLMLA 123 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S +G F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 124 MYSGQLGTFSSRDILLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSVFLLL 183 Query: 181 AIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 I+ M ++ +++ +P +++ ++ F +FA+K P+ P HTWLP+ H + Sbjct: 184 GILGMSLYSSNEPTLNFESLTNQSYPVALEIIFYMGFLIAFAVKSPIIPLHTWLPDTHGE 243 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L A F P + L I IIYA+ S+ Q + Sbjct: 244 AHYSTCMLLAGILLKMGAYGLVRINMELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRN 303 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ +GI S ++G+ GA+ Q++SHG + +ALFF G YDRL Sbjct: 304 VKKRIAYSSVSHMGFLILGIGSISETGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLY 363 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + +MA++ LPG SGF+ E +V++ + N + Sbjct: 364 LDEMGGMAIPMPKIFTIFTTLSMASLALPGMSGFVAELIVLLGIITNQKYLLITKILITF 423 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 424 VTAIGMILTPIYSLSILRQMFYGYKLFNTPNSYFFDSGPRELFISISILIPVISIGIYPD 483 Query: 471 PIRDTFSVPLSSIIENY 487 I + + +I+ N+ Sbjct: 484 FIFSFSADKVEAILSNF 500 >gi|292559556|ref|YP_003540983.1| NADH-plastoquinone oxidoreductase chain 4 [Phoenix dactylifera] gi|294620629|gb|ADF28198.1| NADH-plastoquinone oxidoreductase chain 4 [Phoenix dactylifera] Length = 501 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 157/437 (35%), Positives = 248/437 (56%), Gaps = 14/437 (3%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID F + LG+DG+SI ++LT F+T L++W + N R + L + Sbjct: 64 QLEEDYKWIDIFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 123 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 182 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +D ++ +P +++ ++ FF ++A+K P+ P HTWLPN H +A Sbjct: 183 VLGMGLYGSNEPTLDFERLTNQSYPVALEIILYFGFFIAYAVKSPIIPLHTWLPNTHGEA 242 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+L+S+ Q + Sbjct: 243 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVGTMQIIYAALISLGQRNF 302 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG+ IGI S G+ GA+ Q+LSHG + +ALFF G DR+ + Sbjct: 303 KKRIAYSSVSHMGFTIIGIGSITDMGLNGAILQILSHGFIGAALFFLAGTSCDRIRLVYL 362 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 363 DEMGGISIPMPKIFTMFSSFSMASLALPGMSGFVAESVVFFGIITSPKYLLMPKILITFV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPV 470 + GV+L+ +Y L + R++ +G K V D RE + I + + GIYP Sbjct: 423 MAIGVILTPIYLLSMSRQMFYGY-KLFNVPHSNFLDSGPRELFVSICIFLPVIGIGIYPD 481 Query: 471 PIRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 482 FVLSLSVDRVQTILSNY 498 >gi|299033938|gb|ADD63219.2| NADH-plastoquinone oxidoreductase chain 4 [Phoenix dactylifera] Length = 500 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 157/437 (35%), Positives = 248/437 (56%), Gaps = 14/437 (3%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID F + LG+DG+SI ++LT F+T L++W + N R + L + Sbjct: 63 QLEEDYKWIDIFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +D ++ +P +++ ++ FF ++A+K P+ P HTWLPN H +A Sbjct: 182 VLGMGLYGSNEPTLDFERLTNQSYPVALEIILYFGFFIAYAVKSPIIPLHTWLPNTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+L+S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVGTMQIIYAALISLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG+ IGI S G+ GA+ Q+LSHG + +ALFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFTIIGIGSITDMGLNGAILQILSHGFIGAALFFLAGTSCDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 DEMGGISIPMPKIFTMFSSFSMASLALPGMSGFVAESVVFFGIITSPKYLLMPKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPV 470 + GV+L+ +Y L + R++ +G K V D RE + I + + GIYP Sbjct: 422 MAIGVILTPIYLLSMSRQMFYGY-KLFNVPHSNFLDSGPRELFVSICIFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 481 FVLSLSVDRVQTILSNY 497 >gi|284052988|ref|ZP_06383198.1| NAD(P)H-quinone oxidoreductase subunit 4 [Arthrospira platensis str. Paraca] Length = 444 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 147/418 (35%), Positives = 243/418 (58%), Gaps = 26/418 (6%) Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE--SMVIGAFLSLDMLLFYIFFEASL 145 +++LT F+T IL++W + + FL+L I F DMLLF++ +E L Sbjct: 1 MIILTGFITTLAILAAWPV---TLKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLVWELEL 57 Query: 146 IPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-IDLYAMSKFP 204 +P+++I+ +WGG +R+YAA KF LYT GS+F+L A + M + T + + A+ FP Sbjct: 58 VPVYLILSIWGGKKRLYAATKFILYTAGGSLFILVAALTMAFYGDTVTFDMQAIAIKDFP 117 Query: 205 FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 ++ ++ F ++ +K+P+FP HTWLP+AH +A + LAGI+LKMGGY +R + Sbjct: 118 IKLELLLYGGFLIAYGVKLPIFPLHTWLPDAHGEATAPAHMLLAGILLKMGGYALLRMNV 177 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 + P A FAP++ L ++ I+YA+ S Q ++K+ IAYSSI+HMG+V IG+ S + Sbjct: 178 GMLPDAHATFAPILVILGVVNIVYAAFTSFAQRNLKRKIAYSSISHMGFVLIGMGSFTEI 237 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 G+ GAM QM+SHGL+ ++LFF VG YDR HT + GG+ M + + +MA++ Sbjct: 238 GLSGAMLQMISHGLIGASLFFLVGCTYDRTHTLMLDEMGGVGLKMKKVFAMWTTCSMASL 297 Query: 385 GLPGTSGFIGEFLVIMSVFQNSNTVAV-------LASFGVVLSALYSLWLYRKVVFGVSK 437 LPG SGF+ E +V + + + A LA+ GV+++ +Y L + R++++G Sbjct: 298 ALPGMSGFVAELMVFIGIATSDAYNATFKVLVVFLAAVGVIITPIYLLSMLREILYGPEN 357 Query: 438 CEKV--QQLKDLSLRE----RCMVYPIAVLTVFFGIYP---VPIRDTFSVPLSSIIEN 486 E ++L D RE C++ PI + G+YP + D+ + L++++ Sbjct: 358 QELTSHEKLVDAEPREVFVIACLLVPI----IGIGLYPKVVTQMYDSTTTQLTALMRQ 411 >gi|317009956|gb|ADU80536.1| NADH dehydrogenase subunit M [Helicobacter pylori India7] Length = 512 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 267/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD ++ Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQKAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + +YH+GVDGI++ L++L + +L S ++E +++ I L+LE + Sbjct: 64 EMKELVYQIGVNYHVGVDGIALFLLLLNAIV----VLLSVIYVKERRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + ++ + I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGYDYANNYGMMSFDILDWYQLN-FSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGIIVMGLFLLAGILEERASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPVFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAVYMLTSYKDVFFGNLKAGNNQISVFEDLNARE 453 >gi|91975817|ref|YP_568476.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris BisB5] gi|91682273|gb|ABE38575.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris BisB5] Length = 481 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 155/418 (37%), Positives = 235/418 (56%), Gaps = 10/418 (2%) Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 D+GR ++ Y W+ F S +DG+S L+ + L +++SW I+ + Sbjct: 50 DEGRWYAKV--SYPWVPSFGISLDFAMDGLSAALIAIAAGLGIISVMASWSEIRTQSGLF 107 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF-- 172 + + IG FLS D+L+F F+EA L+P F +I VWG +R AA KF ++ Sbjct: 108 HASLCWTVAATIGVFLSFDLLIFAFFWEAMLVPAFTLIAVWGHGDREGAALKFLIFNAVA 167 Query: 173 -FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 FG + FA+ M + T + +L M K S+Q WM + F +F +K+ + PFH W Sbjct: 168 GFGLLAASFALASMA-DHMTFNAFELAEM-KLSTSVQVWMLLGFSLAFLVKLSVPPFHAW 225 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP AH APTAGS+ LAG++LK G YG RF LFP + AP L +Y Sbjct: 226 LPEAHTLAPTAGSILLAGVLLKTGAYGLFRFAPMLFPQGLEAVAPYGIALGAAGALYGGF 285 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V+ Q D K+L+AY+SIAHM V +GI +G++ + GA +M++H +SALF +G +Y Sbjct: 286 VACGQNDAKRLVAYTSIAHMSIVLMGISAGVQYALAGAAVEMIAHSFSASALFLLIGALY 345 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R HTRD+ GGL PR+A +F A + LPGT+ F+GE L+++ +FQ + A+ Sbjct: 346 ERTHTRDLRQLGGLQQLAPRFAAAFALFCSALLALPGTANFVGEALIVVGIFQVNWVFAL 405 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 LA +V+S +Y+ L + +VFGV + L DL+ RE V +++ T+ G+YP Sbjct: 406 LALSTLVVSVIYATRLLKGLVFGVPRTNA--PLADLNWREYWPVLVMSLATLIIGLYP 461 >gi|149390493|ref|YP_001294321.1| NADH-plastoquinone oxidoreductase subunit 4 [Illicium oligandrum] gi|193806242|sp|A6MMZ5|NU4C_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|147917446|gb|ABQ52570.1| NADH-plastoquinone oxidoreductase subunit 4 [Illicium oligandrum] Length = 500 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 161/480 (33%), Positives = 270/480 (56%), Gaps = 15/480 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ LP I F Y G ++ + + I + F + F Sbjct: 3 HFPWLTIIVVLPISAGSSIGFLPYRGNKAVRWYTICICILELLLTTYAFCYH-FQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y+WI+ F ++ LG+DG+S+ V+LT F+T L++W +++ R + L Sbjct: 62 IQLEEDYNWINLFDFNWRLGIDGLSMGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFMMWELELIPIYLLLSLWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + M ++ ++ +P +++ +I FF ++A K P+ P HTWLP+ H + Sbjct: 181 GVSGMGLYSSNEPTLNFETLTNQSYPVALEIIFYIGFFIAYAAKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIIGAIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++TIGI S +G+ G++ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFITIGIGSITDTGLNGSILQIISHGFIGAALFFLAGTTYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ ++ F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGIAILMPKMFMMFSSFSMASLALPGMSGFVAESVVFLGIITSPKYFLMPKILITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +YSL + R++ +G K V D RE ++ I + + GIYP Sbjct: 421 VMAIGMILTPIYSLSMSRQIFYGY-KLFNVSNSYFVDSGPRELFILICILLPVIGIGIYP 479 >gi|288928306|ref|ZP_06422153.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288331140|gb|EFC69724.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 501 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 152/445 (34%), Positives = 261/445 (58%), Gaps = 21/445 (4%) Query: 56 DKGRSSFQMIEYYHWIDYF----CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 D G + + +Y +D+F +Y +GVDGIS+++++L++ + +SW+ ++ Sbjct: 54 DAGNTDAMLFQYT--VDWFKPLNIAYAVGVDGISVVMLLLSSIIVFTGTFASWQ-LKPLT 110 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 +EY + F +L V G F+S+D+ ++F+E +LIPM+++IGVWG ++ Y+A K L Sbjct: 111 KEYFLWFTLLSIGVYGFFISVDLFTMFMFYEVALIPMYLLIGVWGSGKKEYSAMKLTLML 170 Query: 172 FFGSIFMLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 GS ++ I+ + + T +I++L A+ P S+Q ++ F F + +FPFH Sbjct: 171 MGGSALLIIGIIGIYFFSGATTMNILELQALHNIPESVQKVLFPFVFIGFGVLGALFPFH 230 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TW P+ H APTA S+ AG+++K+GGYGC R + L P A+ + + L+ I+++Y Sbjct: 231 TWSPDGHASAPTAVSMLHAGVLMKLGGYGCFRIAIVLLPEAAHQLSWIFIILTTISVVYG 290 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 + + VQTD+K + AYSS++H G V + ++ GA+ QMLSHGL+++ F +G+ Sbjct: 291 AFSACVQTDLKYINAYSSVSHCGLVLFALLMMTQTSCTGAILQMLSHGLMTALFFALIGM 350 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-- 407 IY R HTRDI GGL+ MP +V ++ +AN+GLPG SGF+ E + + FQN++ Sbjct: 351 IYGRTHTRDIRQLGGLMKIMPFLSVGYVIAGLANLGLPGFSGFVAEMTIFVGSFQNNDVF 410 Query: 408 --TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER----CMVYPIAVL 461 T ++A +V++A+Y L + K++FG +QL D + ER C+++ +A L Sbjct: 411 HRTATIIACTAIVITAVYILRVVGKILFGKVADPHYEQLTDATWDERFAVGCLIFCVAGL 470 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIEN 486 G+ P+ + S L II++ Sbjct: 471 ----GLAPLWASNIISDTLGPIIDH 491 >gi|256425956|ref|YP_003126609.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chitinophaga pinensis DSM 2588] gi|256040864|gb|ACU64408.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chitinophaga pinensis DSM 2588] Length = 478 Score = 263 bits (672), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 145/411 (35%), Positives = 247/411 (60%), Gaps = 3/411 (0%) Query: 69 HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 +WI + +G+DG+ ++L +LT ++ + E + L+ ++ ++G Sbjct: 59 NWIPQLGAQFSVGLDGMGLMLCLLTAISFLLILIVIYNREYERPNSFYGLMLLSQAGLVG 118 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + D LLFY+F+E +LIP++ + +WGG +RI +KFF+YTF GS+ ML ++ + Sbjct: 119 VFTAYDALLFYVFWELALIPVYFLCSLWGGEKRIPVTFKFFVYTFAGSLLMLVGLIYIYL 178 Query: 188 EKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + S + Q W++ FF +FAIK+P+FPFHTW P+ + Q+PT ++ Sbjct: 179 QTPEHSFSYASFVSGAITPQDQSWLFWLFFVAFAIKMPIFPFHTWQPDTYEQSPTPVTMV 238 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 L+GIM+KMG +G +R+LLP+ P + ++ V LS+I IIYAS +++VQ+DIK+LIAYS Sbjct: 239 LSGIMVKMGLFGVVRWLLPVLPKGAYMWSDVAIVLSIIGIIYASCIAIVQSDIKRLIAYS 298 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 SIAH+G ++ IF+ + ++G M QM +HG+ L+ V +I +RL +++ GG+ Sbjct: 299 SIAHIGLMSAAIFTNNEQSLQGLMVQMFNHGINIIGLWIIVEIIQNRLKIKNLNEMGGIA 358 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A+ ++ ++AN+ LP T+GFIGEFL++ +FQ + +A G++L A+Y+L Sbjct: 359 QYAPGIAIFLVTISLANIALPLTNGFIGEFLMLSGLFQYNVWFMAVAGLGIILGAVYTLN 418 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 + +KV+FG S + + DL E ++ I + + G YP P+ + S Sbjct: 419 MVQKVIFGQSN-QLTETTTDLKGNELLVLIIIVGIILVLGFYPKPMLELVS 468 >gi|290486859|gb|ADD29814.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Lonicera japonica] Length = 500 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 152/443 (34%), Positives = 257/443 (58%), Gaps = 12/443 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ LP +I F + G ++ + + + + F + F Sbjct: 3 DFPWLTIIVVLPISAGSLICFLPHRGNKVIRWYTICICVLELLLTTYAFCYH-FQSDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI +F + LG+DG+SI L++LT F+T L++ + + + R + L Sbjct: 62 IQLVEDYKWIHFFDFHWRLGIDGLSIGLILLTGFITTLATLAA-RPVTRDSRFFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F + D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 121 MYSGQIGSFSARDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + ++P +++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQRYPVALEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLHHAHSIFSPWLVIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTGYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV---AVLASF 415 + GG+ MP+ + F+MA++ LPG SGF GEF+V + + + +L +F Sbjct: 361 LDEMGGIAIQMPKIFTMFSTFSMASLALPGMSGFAGEFIVFFGIITSQKYLLMPKILITF 420 Query: 416 ----GVVLSALYSLWLYRKVVFG 434 G++L+ +YSL + R++ +G Sbjct: 421 VMGIGMILTPIYSLAMSRQMFYG 443 >gi|295837113|ref|ZP_06824046.1| NADH-quinone oxidoreductase, M subunit [Streptomyces sp. SPB74] gi|197697224|gb|EDY44157.1| NADH-quinone oxidoreductase, M subunit [Streptomyces sp. SPB74] Length = 523 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 173/517 (33%), Positives = 287/517 (55%), Gaps = 31/517 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 M+ P L++ +P +G + ++ + RR+ + ++ + V FD Sbjct: 1 MSFPLLTVTAAVPAVGA---VLTAAVPAARRTAAKWLALLFSLATLALALAVLVRFDPDG 57 Query: 60 SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSW---KSIQENFREYM 115 +Q+ E + WI D+ Y LGVDGI +L+ LT L PF +L+ W ++ N R + Sbjct: 58 GRYQLTESHAWIADFGVRYELGVDGIGAVLLALTALLVPFVMLAGWHEPDGLETNSRRWR 117 Query: 116 IA------FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----------GS 158 L++E+MV+ +F + D+ LFY+FFEA LIPM+ +IG +G + Sbjct: 118 PTQGFFALILLVEAMVVLSFEATDVFLFYLFFEAMLIPMYFLIGGFGDRASGRDAQEEAT 177 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT---SSIIDLYAMSKFPF--SIQYWMWI 213 +R YAA KF LY G + ML A++ + T + I+D A S + W+++ Sbjct: 178 QRSYAAVKFLLYNLAGGLVMLAAVIGLYTVTHTFSLTEILDARADGSLSMATSTERWLFL 237 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 FF +FA+K P++P HTWLPNA +A T +V + ++ K+G + +RF L LFP AS++ Sbjct: 238 GFFFAFAVKAPLWPVHTWLPNAMGEASTPVAVLITAVVDKVGTFAMLRFCLQLFPEASKW 297 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 PVI L++I+I+Y +L+++ Q D+K+LIAY+S++H G++ +GIF+ G GA M Sbjct: 298 ATPVILVLAVISILYGALLAVGQRDMKRLIAYASLSHFGFIILGIFAMTSQGQSGATLYM 357 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG+ ++AL G + R +R I YGG+ P A ++ +A + LPG + F+ Sbjct: 358 VNHGISTAALMLVAGFLISRRGSRLISDYGGVQKVAPVLAGTFLIGGLATLSLPGLAPFV 417 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFLV++ F+ + ++A+ G+VL+ALY L LY++ + G K E V + DL RE Sbjct: 418 SEFLVLVGTFERHKALGIVATLGIVLAALYVLVLYQRTMTGPVKPE-VSAMGDLRARELV 476 Query: 454 MVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 + P+ VL V G+YP P+ D + + + + K Sbjct: 477 VAVPLIVLLVVLGVYPKPVTDVINPAVKQTMSDVHEK 513 >gi|325126915|ref|YP_004286152.1| NADH-plastoquinone oxidoreductase subunit 4 [Fragaria vesca subsp. vesca] gi|324022827|gb|ADY15401.1| NADH-plastoquinone oxidoreductase subunit 4 [Fragaria vesca subsp. vesca] Length = 500 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 164/480 (34%), Positives = 266/480 (55%), Gaps = 15/480 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 N P+L++V LP +I F + G ++ L I I + + + +S F Sbjct: 3 NFPWLTLVVVLPISAGSLIFFLPHRGNKVIRWY--TLCICIIELLLTTYAFSYRFQLDDP 60 Query: 61 SFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E Y WI++F Y LG+DGISI ++LT F+T L++W +++ R + L Sbjct: 61 LMQLTENYKWINFFDFYWRLGIDGISIGPILLTGFITTLATLAAWPVTRDS-RLFHFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 120 AMYSGQIGPFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLL 179 Query: 180 FAIVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ++ + ++ A +P +++ +I F +FA+K P+ P HTWLP+ H Sbjct: 180 IGVLGIGLYGSNEPTLNFETSANQSYPVALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+L S Q Sbjct: 240 EAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAALTSPGQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++KK IAYSS++HMG++ IGI S +G+ G + Q++SHG + +ALFF G YDR+ Sbjct: 300 NLKKRIAYSSVSHMGFIIIGIGSISDTGLNGTILQIISHGFIGAALFFLAGTSYDRIRLV 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---TVAVLAS 414 + GG+ ++P+ + +MA++ LPG SGF+ E +V + + +L + Sbjct: 360 YLDEMGGMAISIPKIFTTFSILSMASLALPGMSGFVAELIVFFGILTSQKYLLMTKILIT 419 Query: 415 F----GVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 F G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 420 FVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFISISILLPVIGIGIYP 479 >gi|289066871|ref|YP_003434389.1| NADH-plastoquinone oxidoreductase subunit 4 [Vigna radiata] gi|259020058|gb|ACV90256.1| NADH-plastoquinone oxidoreductase subunit 4 [Vigna radiata] Length = 498 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 159/495 (32%), Positives = 272/495 (54%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+ V LP +G +I+ + G ++ + + I +F + F+ Q Sbjct: 5 PWLTTVVVLPIVGGSLIVLFPHKGNKTIKWYTYCICFIDLLLITYVFCYH-FELDDPLIQ 63 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI +F Y G+DG+S+ ++LT F+T LS+ +E+ + + L + Sbjct: 64 LTENYKWIHFFDFYWRFGIDGLSLGPLLLTGFITTLATLSAQPVTRES-KLFYFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S +G F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L I Sbjct: 123 SGQLGTFSSQDILLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSVFLLLGI 182 Query: 183 VVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + M + ++ +++ +P +++ ++ F +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGMSFYSSNEPTLNFESLTNQSYPVALEIIFYMGFLIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L A F P + L I IIYA+ S+ Q +IK Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRNIK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ +GI S ++G+ GA+ Q++SHG + +ALFF G YDRL + Sbjct: 303 KRIAYSSVSHMGFLILGIGSISETGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + +MA++ LPG SGF+ E +V++ + N + + Sbjct: 363 EMGGMAIPMPKIFTIFTTLSMASLALPGMSGFVAELIVLLGIITNQKYLFITKILITFVT 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +Y L + R++ +G L D RE + I + + GIYP I Sbjct: 423 AIGMILTPIYLLSILRQMFYGYKLFNTPNSYLFDSGPRELFISISILIPVISIGIYPDFI 482 Query: 473 RDTFSVPLSSIIENY 487 + + +I+ N+ Sbjct: 483 FSFSADKVETILSNF 497 >gi|27885158|gb|AAO26059.1| NADH dehydrogenase subunit 4 [Acanthospermum australe] Length = 417 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSCRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|188528061|ref|YP_001910748.1| NADH dehydrogenase subunit M [Helicobacter pylori Shi470] gi|188144301|gb|ACD48718.1| NADH dehydrogenase subunit M [Helicobacter pylori Shi470] Length = 512 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 264/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDVQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E I +YH+GVDGI++ L++L + C++ ++E+ +++ I L+LE + Sbjct: 64 EMKELIYQIGVNYHVGVDGIALFLLLLNAIVVLLCVIY----VKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANDYGMMSFDILDWYQLN-FSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLAGILEERASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPILAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKTGNNQISVFEDLNARE 453 >gi|78043816|ref|YP_360248.1| proton-translocating NADH-quinone oxidoreductase subunit M [Carboxydothermus hydrogenoformans Z-2901] gi|77995931|gb|ABB14830.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 506 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 161/499 (32%), Positives = 282/499 (56%), Gaps = 17/499 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+ P +G VI F ++ VA + S+F + +D + Sbjct: 1 MHFPLLTATLLAPIIGALVIAFIPK--DEHKAIKSVAAFAMFVALFLSVFAFFSYDLSKG 58 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ +E Y+W+ D ++LGVDG+S+ +++LT L I +SW ++ +E+ + FL Sbjct: 59 GFQFVEKYNWVPDLGVQFYLGVDGLSLPMLLLTNLLGFAAIFASW-NVNNRPKEFFVLFL 117 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI---YAAYKFFLYTFFGSI 176 +L + V+G F++ D+ +F +F+E +IP+++++ +WG S+R+ YA K +Y GS Sbjct: 118 LLIAGVMGTFIAQDLFIFLLFYEVVVIPIYIMVVIWGSSKRVTKEYAGMKLTIYLLIGSA 177 Query: 177 FMLFAIV---VMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 F+LF ++ V + +++ A+ K FP Q ++ F + M+PFH+W Sbjct: 178 FLLFGLISIFVKSSDLLGYPTMNIEALGKVAFPKDFQITIFPFLLFGFGSLLSMWPFHSW 237 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 P+ + APTA S+ AG++ K+GGYG IR L L P ++Y+AP+I L+ + + YA+L Sbjct: 238 SPDGYAGAPTAVSMIHAGVLKKIGGYGLIRIALYLLPEGAKYWAPIIAILATVNVAYAAL 297 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 +++ Q D+K ++ YSS++HMGYV +GI S G+ GA+ M +HG++++ F +G +Y Sbjct: 298 IALAQKDLKYVVGYSSVSHMGYVLLGIASLNIIGINGAVANMFAHGVMAALFFSMIGFVY 357 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV-- 409 ++ HTR I GGL H P+ A+ +++ MA++GLPG F+ EF V + +++N + Sbjct: 358 EKTHTRYIPDLGGLAHQTPKLAIGLVMAGMASLGLPGLISFVPEFTVFVGIWKNEAMIPK 417 Query: 410 --AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 AV+A GV+++ALY L +FG + E+ LKD+ E + + + V G+ Sbjct: 418 FLAVIAIAGVIITALYVLRALAYSLFG-PRREEYDHLKDIKGAELVPLVVLGFVLVAGGV 476 Query: 468 YPVPIRDTFSVPLSSIIEN 486 P I D + ++ I+ Sbjct: 477 LPFLIMDMVNSGVAPILAK 495 >gi|91214195|ref|YP_538818.1| NADH dehydrogenase subunit 4 [Glycine max] gi|122232578|sp|Q2PMN2|NU4C_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|83595796|gb|ABC25177.1| NADH-plastoquinone oxidoreductase subunit 4 [Glycine max] Length = 498 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 159/496 (32%), Positives = 275/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+ V LP +G +I + G ++ + I I+ + + +V+ F+ Sbjct: 5 PWLTTVVILPIVGGSLIFLFPHKGNKVIKWYTIC--ICLIDLLITSYVFCYHFELDDPLI 62 Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI++F Y G+DG+S+ ++LT F+T L++ +E+ + + L + Sbjct: 63 QLTENYKWINFFDFYWSFGIDGLSLGPILLTGFITTLATLAAQPVTRES-KLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 122 YSGQIGTFSSQDILLFFIMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGSSVFLLLG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 I+ M + ++ +++ +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 182 ILGMSFYSSNEPTLNFESLTNQSYPVALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + A F+P + L I IIYA+ S+ Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMEFLSRAHSIFSPWLILLGSIQIIYAASTSLGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ +GI S +G+ GA+ Q++SHG + +ALFF G YDRL + Sbjct: 302 KKRIAYSSVSHMGFLLLGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ V + +MA++ LPG SGF+ E +V++ + + + + Sbjct: 362 DEMGGMAIPMPKIFTVFTILSMASLALPGMSGFVAELIVLLGIITSQKYLLITKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 422 TAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYFFDSGPRELFISISILIPVISIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 I + + +I+ N+ Sbjct: 482 IFSFSADKVEAILSNF 497 >gi|315587163|gb|ADU41544.1| NADH-quinone oxidoreductase subunit M [Helicobacter pylori 35A] Length = 512 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 165/455 (36%), Positives = 265/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E I +YH+GVDGI++ L++L + C++ ++E+ +++ I L+LE + Sbjct: 64 EMKELIYQIGVNYHVGVDGIALFLLLLNAIVVLLCVIY----VKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+ + FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNTIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANNYGMMSFDILDWYQLN-FSSEVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLAGILEERTSSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKAGNNQISVFEDLNARE 453 >gi|170665346|gb|ACB29213.1| NADH dehydrogenase subunit D [Wunderlichia mirabilis] Length = 500 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 162/496 (32%), Positives = 273/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ + + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-QLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P +TWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLNTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGLITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|260592332|ref|ZP_05857790.1| NADH dehydrogenase, M subunit [Prevotella veroralis F0319] gi|260535719|gb|EEX18336.1| NADH dehydrogenase, M subunit [Prevotella veroralis F0319] Length = 503 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 144/396 (36%), Positives = 240/396 (60%), Gaps = 11/396 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++ +GVDGIS+++++L+ + +SW+ ++ +EY + F++L S V G F+S DM Sbjct: 77 AFSVGVDGISVVMILLSAIIVFTGTFASWQ-LEPMKKEYFLWFVLLASGVFGFFISTDMF 135 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + Y+A K L GS ++ I+ + + T Sbjct: 136 TMFMFYEVALIPMYLLIGVWGTGPKEYSAMKLTLMLMGGSALLILGILGIYYFSGATTMD 195 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 +I+L M P +IQ + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 196 VIELARMHAMPKNIQNIFFPFVFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 255 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC+R + L P A Q +AP+ L+ I+++Y +L + VQTD+K + AYSS++H G Sbjct: 256 LGGYGCLRIAMFLMPDALQTWAPIFLVLTTISVVYGALSACVQTDLKYINAYSSVSHCGM 315 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F C+G+IY R TRD+ GGL+ +P A Sbjct: 316 VLFALVMTTQTAITGAILQMLSHGLMTALFFACIGMIYHRAGTRDVRYLGGLMKVIPFLA 375 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYR 429 V +V +AN+GLPG SGF+ E + + F+N+ T ++A +V++A+Y L + Sbjct: 376 VSYVVAGLANLGLPGFSGFVAEMTIFVGSFENAGTFHRVATIIACTAIVITAVYILRVVG 435 Query: 430 KVVFGVSKCEKVQQLKDLSLRER----CMVYPIAVL 461 K++F +K +L D + ER C+++ +A L Sbjct: 436 KILFQKIPNKKFYELHDATWDERFAIGCLIFCVAGL 471 >gi|52220861|ref|YP_087016.1| NADH dehydrogenase subunit 4 [Panax ginseng] gi|68052547|sp|Q68RV6|NU4C_PANGI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|51235364|gb|AAT98560.1| NADH dehydrogenase subunit 4 [Panax ginseng] Length = 500 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 159/477 (33%), Positives = 263/477 (55%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP VI F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVLPIFAGSVIFFLPHRGNRVIRWYTICICILELLLTTYAFCYH-FQFDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI++F + LG+DG+SI ++LT F+T L++ + + + R + L + Sbjct: 64 LVEDYKWINFFAFHWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG R+Y+A F LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWEFELIPVYLLLSIWGGKRRLYSATNFILYTAGGSIFLLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVGTIQIIYAASTSPGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFILIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGIAIPMPKIFTMFTSFSMASLALPGMSGFVAELIVFFGIITSQKYLLMPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 423 AIGMILTPIYSLSMLRQMFYGYKLFNAPNSYVFDSGPRELFVSISIFLPVIGIGMYP 479 >gi|27885160|gb|AAO26060.1| NADH dehydrogenase subunit 4 [Acmella radicans] Length = 417 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLLG 129 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|300868847|ref|ZP_07113454.1| NAD(P)H-quinone oxidoreductase subunit D4 [Oscillatoria sp. PCC 6506] gi|300333198|emb|CBN58646.1| NAD(P)H-quinone oxidoreductase subunit D4 [Oscillatoria sp. PCC 6506] Length = 499 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 170/472 (36%), Positives = 269/472 (56%), Gaps = 14/472 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYL---GCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LS + ++P LG VI F + R+ ++L I+ F++S+F+ + FD Sbjct: 2 LSALIWIPILGAAVIGFWPGVIAPNISRK----ISLVIAGAAFLWSVFLATQFDPSVGGL 57 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q E+ WI +Y+LG+DG+S+ LV+L + LT I S+ +SI R Y L++ Sbjct: 58 QFSEFLPWIKPLGLNYNLGIDGLSLPLVILNSLLTGIAIYSTDESIHRP-RVYYALMLLI 116 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 V GAFL+ ++LLF++FFE LIP++++I +WGG+ + YAA KF LYT I +L + Sbjct: 117 AGGVAGAFLAQNLLLFFLFFEIELIPLYLLIAIWGGARKGYAATKFLLYTAVAGILVLAS 176 Query: 182 IVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + W S ++ S P Q + +FAIKIP+ PFHTWLP+AHV+A Sbjct: 177 FLGVVWFSGAGSFDLETLQASSLPLRTQIILLTGILVAFAIKIPLVPFHTWLPDAHVEAS 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T SV LAG++LK+G YG +RF L LFP A +P + ++++++Y + ++ Q D+K Sbjct: 237 TPVSVLLAGVLLKLGTYGMLRFGLGLFPQAWAILSPWLASWAVVSVLYGASCAIAQKDMK 296 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K++AYSSIAHMGY+ +G + + G + QM+SHGL+S LF VGV+Y + +RD+ Sbjct: 297 KMVAYSSIAHMGYILLGSAAATPVSLIGTVLQMVSHGLISGLLFLSVGVVYKKSGSRDLD 356 Query: 361 AYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 GL++ +P +M++ MA+ G+PG +GFI EFLV +L G Sbjct: 357 TIKGLLNPERGLPMIGTLMILGVMASAGIPGMAGFIAEFLVFRGSMPVFPVQTLLCMIGT 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+++Y L + + FG + V L + R+R +AV+ + G+ P Sbjct: 417 GLTSVYFLIMVNRAFFG-RLSDLVINLPQVLWRDRIPPMILAVIIIILGLLP 467 >gi|170665214|gb|ACB29147.1| NADH dehydrogenase subunit D [Dicoma sp. JLP-2008] Length = 500 Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 161/496 (32%), Positives = 272/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP VI F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSVIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y++ KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSSTKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ + F++A++ LPG SGF+ E +V + + + + + Sbjct: 362 EEMGGVAIPLPKIFTMFSSFSVASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|302536211|ref|ZP_07288553.1| NADH dehydrogenase subunit NuoM2 [Streptomyces sp. C] gi|302445106|gb|EFL16922.1| NADH dehydrogenase subunit NuoM2 [Streptomyces sp. C] Length = 556 Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 160/435 (36%), Positives = 238/435 (54%), Gaps = 24/435 (5%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE--NFREYMI 116 S FQ WI HLG+DGIS+ L+++T L C + S+ + E + + ++ Sbjct: 72 SRFQATTDISWIQALNIRIHLGIDGISLPLLLMTALLFFLCAVYSYFKLPEGPSPKAFVA 131 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LVLES + F LD++LF++ FE LIPM+ +I WGG++R AA+KF LYT GS+ Sbjct: 132 LLLVLESGTLATFAVLDLMLFFLAFEMVLIPMYFLIARWGGAQRQAAAWKFILYTLLGSV 191 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 ML ++++ T ++ L + + S Q +A A+K PM+P HTWLP+ Sbjct: 192 VMLLGLLLIGLNSGTFDMVALASDNGRGLSHTTQLLAVLAIGIGLAVKTPMWPLHTWLPD 251 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH APT GSV LAG+MLKMG YG +R LLP+ P FAP + + + I+Y SL + Sbjct: 252 AHTAAPTVGSVLLAGVMLKMGTYGFVRILLPVTPDGMHTFAPYLGAFAAVGIVYGSLACL 311 Query: 295 VQT------DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 T D+K+LIAYSS+ HMG+V +GI S +GV GA+F ++HGL++ LFF VG Sbjct: 312 ALTRRNGKGDLKRLIAYSSVGHMGFVLLGIASMTTTGVNGALFANIAHGLITGLLFFLVG 371 Query: 349 VIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 + DR + D+ G L PR+ ++ +A++GLPG +GF GE L + F Sbjct: 372 ALKDRYGSSDLDTLAGATGAALYGRAPRFGALLAFAAVASLGLPGLAGFWGEMLALFGAF 431 Query: 404 QNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + T + +FG +L+A Y L + R+V G + + D+ E Sbjct: 432 DPAEGLSRPAFLTYMAVGAFGTLLTAAYLLIVVRRVCMGDPQAGPEITVADVQRYEFAAW 491 Query: 456 YPIAVLTVFFGIYPV 470 P+ LTV G++P Sbjct: 492 TPLVALTVLAGLWPA 506 >gi|27885283|gb|AAO26122.1| NADH dehydrogenase subunit 4 [Loxothysanus sinuatus] Length = 417 Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 231/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHXXX 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|317969692|ref|ZP_07971082.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. CB0205] Length = 540 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 169/494 (34%), Positives = 270/494 (54%), Gaps = 15/494 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+LS++ LP +++ G + VAL + L+V+S +D + Sbjct: 36 PWLSLIALLPIAIAPLVMLLPGDGTDPKLPRTVALTTLLADLGLMLYVYSQHYDGSIAGL 95 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E + W+ + L DG+S LVVL+ +T + +SW +I+ R Y LV Sbjct: 96 QLVERFAWVPAIGLEWSLATDGLSAPLVVLSGLVTLLSVAASW-NIKTKTRLYFALLLVQ 154 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S FLS D LLF++ +E L+P++++I +WGG +R YAA KF LYT S+ +L + Sbjct: 155 ASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGQQRQYAATKFILYTATASLLILLS 214 Query: 182 IVVMCWEKK-TSSIIDLYAMSKFPFSI-QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + T ++ +L A S P + ++ F F +K+PMFP HTWLP+AH +A Sbjct: 215 GLALALNGPFTLNLSELIARS--PGGLFGLLCYLGFLVGFGVKLPMFPLHTWLPDAHGEA 272 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 S+ LAG++LKMGGY +RF + + P A AP + L ++ I+Y +L ++ Q ++ Sbjct: 273 NAPVSMLLAGVLLKMGGYALLRFNVQMLPEAHLQLAPALIVLGIVNIVYGALNALAQDNV 332 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF GV Y+R T I Sbjct: 333 KRRIACSSVSHMGFVLLGIGAIDSLGMSGAMLQMISHGLIAAAMFFVTGVFYERTKTLSI 392 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-TVA------VL 412 GGL +P + ++A++ LPG SGF+ E V + V N TV VL Sbjct: 393 PNMGGLAKVLPITFAFFVASSLASLALPGMSGFVSEITVFLGVTSNDGFTVGFRVIAVVL 452 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ GVVL+ +Y L L R+V FG + + L D+ RE + + V T+ G +P Sbjct: 453 AAIGVVLTPIYLLSLCRRVFFG-PRIPALAVLGDMKPRELVIGLTLLVPTLVIGFWPRVA 511 Query: 473 RDTFSVPLSSIIEN 486 D + +++ + Sbjct: 512 IDLYEATTTALAND 525 >gi|56750924|ref|YP_171625.1| NADPH dehydrogenase subunit 4 [Synechococcus elongatus PCC 6301] gi|56685883|dbj|BAD79105.1| NADPH dehydrogenase subunit 4 [Synechococcus elongatus PCC 6301] Length = 496 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 158/422 (37%), Positives = 239/422 (56%), Gaps = 11/422 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD +Q++E WI+ Y LGVDG+S+ LV L LT F I++ + ++ R Sbjct: 50 FDPQIHDWQLLEQLPWIEQLGLGYRLGVDGLSLPLVGLNALLT-FLIIAGLERQEQRSRL 108 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L+L V GAFL+ D+LLF++F+E LIP++++I +WGG+ R YAA KF +YT Sbjct: 109 YHGLMLLLSGAVSGAFLAQDLLLFFVFYEVELIPLYLLISIWGGARRGYAATKFLIYTAL 168 Query: 174 GSIFML---FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 +L A+ ++ + +L A+ P + Q + + +F IK P+ PFHT Sbjct: 169 SGALLLIGFLALTILSGAGSFAYNPNLAAV--LPIAQQVTLLVLILVAFGIKTPIVPFHT 226 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AHV+A T S+ LAG++LK+G YG +RF L LFP AP + L++++ +Y S Sbjct: 227 WLPDAHVEASTPVSMMLAGVLLKLGTYGILRFGLGLFPQVWPIVAPWLAGLAVVSTLYGS 286 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 L ++VQ D+KK++AYSSI HMGY+ + + + GA+ QM+SHGL+S+ LF VG + Sbjct: 287 LSAIVQQDMKKMVAYSSIGHMGYILLAAAATTPLSLLGAVCQMISHGLISALLFLEVGFV 346 Query: 351 YDRLHTRDIFAYGGLV---HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 Y R TRD+ GL+ +P +M++ MA+ GLPG GFI EF++ F Sbjct: 347 YSRTGTRDLRVLQGLLTPERGLPIVGSLMILAVMASGGLPGMVGFIAEFMIFRGSFSTFT 406 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 + G L+++Y L L G S K + + +LRE +A L V FG+ Sbjct: 407 VQTLFCMVGTGLTSVYFLLLSIVPSLGGSLI-KWKPCQMWALREHIPALMLATLIVIFGV 465 Query: 468 YP 469 P Sbjct: 466 QP 467 >gi|121534371|ref|ZP_01666195.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermosinus carboxydivorans Nor1] gi|121307141|gb|EAX48059.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermosinus carboxydivorans Nor1] Length = 511 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 146/445 (32%), Positives = 251/445 (56%), Gaps = 17/445 (3%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFL 95 A+G+S S++ + +D Q E W+ D +Y +GVDGIS+ L++LTT + Sbjct: 39 AMGVS---LSLSIYCYFAYDLAAGGMQFTENVPWLNDLGVTYAMGVDGISLPLMLLTTLI 95 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 + +SW S+ +E+ I L+L + VIG F++ D+ +F +F+E +IP+++++ VW Sbjct: 96 GFSAVFASW-SVDHRPKEFFILLLILTAGVIGTFITRDLFIFLLFYELVVIPIYIMVIVW 154 Query: 156 GGSERI---YAAYKFFLYTFFGSIFMLFAIVVMCWEK--------KTSSIIDLYAMSKFP 204 G S+R+ YA K LY GS FML +V + +++ + + P Sbjct: 155 GSSKRVTKEYAGMKLTLYLLIGSAFMLVGVVALYLTAYPAGLRTFSMEALVRAHELGNLP 214 Query: 205 FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 Q + + F + M+P H+W P+ + APTA S+ AG++ K+GGYG IR L Sbjct: 215 EDFQIFAFFLLLIGFGSLLSMWPLHSWSPDGYAGAPTAVSMIHAGVLKKIGGYGLIRLGL 274 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 + PL ++++AP+I L + ++YA+ +++ Q D+K ++ YSS++HMG+V IG + Sbjct: 275 LVLPLGAKFWAPLIALLGVANVVYAAFIAVAQKDMKYVVGYSSVSHMGFVLIGFAALNVI 334 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 G+ GA+ M +HG++S+ F +G +Y++ HTR I GGL H +PR A M+ MA++ Sbjct: 335 GLNGAVANMFAHGVMSALFFAMIGYVYEKTHTRHIPDLGGLAHQLPRVATGFMLAGMASL 394 Query: 385 GLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL 444 GLPG GF+ EF + + F+ +LA G+VL+ALY+L + V+FG + + Sbjct: 395 GLPGLIGFVPEFTIFVGAFRQYPLPTLLAITGIVLTALYTLRVLANVLFG-PRLVQYDNC 453 Query: 445 KDLSLRERCMVYPIAVLTVFFGIYP 469 +D+ + + + V FG++P Sbjct: 454 RDVRGPALVPLLALGSVLVVFGLFP 478 >gi|148657108|ref|YP_001277313.1| proton-translocating NADH-quinone oxidoreductase subunit M [Roseiflexus sp. RS-1] gi|148569218|gb|ABQ91363.1| proton-translocating NADH-quinone oxidoreductase, chain M [Roseiflexus sp. RS-1] Length = 507 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 155/451 (34%), Positives = 257/451 (56%), Gaps = 8/451 (1%) Query: 41 STINFIFSLFVWSVFD-KGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPF 98 S I+ +L V+ +D + FQ +E W+ + +Y LGVDG+S+ +++L + Sbjct: 46 SFISLALTLLVYLAYDYRSPQQFQFLEEVPWLPELGINYILGVDGVSLPMLLLNGLVIFT 105 Query: 99 CILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS 158 L SW +I+E REY L+L + V G F+SLD+ L +IF+E +++PM+++IG+WG + Sbjct: 106 GALISW-NIEERTREYWALLLLLAAGVYGVFVSLDLFLLFIFYELAVLPMYLLIGIWGST 164 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK---FPFSIQYWMWIAF 215 + Y A K LY GS F++ +V + + T D+ +++ F +Q ++ Sbjct: 165 RKEYGAMKLTLYLMGGSAFIILGMVAVYY-SGTLRTFDMRLLAQSALFSRDVQIVFFVPL 223 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 F FA+ MFPFHTW P HV APTA S+ AG+++K+G YGC+R + +FP + Y+ Sbjct: 224 FLGFAVLAGMFPFHTWSPTGHVAAPTAVSMLHAGVLMKLGAYGCLRVAMWIFPEGASYWL 283 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 I +LI +Y + ++M Q D K +I YSS++HMG +G+ + G+ GA+ QM + Sbjct: 284 LPIAIATLINAVYGASIAMTQRDFKFMIGYSSVSHMGLTLMGLAAANTIGITGAVLQMFA 343 Query: 336 HGLVSSALFFCVG-VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 HG++++ F VG ++YDR HTR GGL + MP A+V ++ +++MG+PG +GF Sbjct: 344 HGVMTALFFAVVGRMVYDRTHTRQFPELGGLFNVMPFAAIVFIIAGLSSMGMPGLAGFWA 403 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EF + M ++Q +AVLA + ++A Y L +V FG K + ++L L+ E Sbjct: 404 EFNIFMGMWQRFPLIAVLAGISIPITAGYILLAVYRVFFGELKNPEFRRLPGLTTPEYVA 463 Query: 455 VYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 +A + + GIYP + + + I E Sbjct: 464 GAILAAVLIVSGIYPAYLTEPIEASVRPIAE 494 >gi|313184041|ref|YP_004021198.1| NADH-plastoquinone oxidoreductase subunit 4 [Castanea mollissima] gi|309321568|gb|ADO65108.1| NADH-plastoquinone oxidoreductase subunit 4 [Castanea mollissima] Length = 499 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 156/442 (35%), Positives = 248/442 (56%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRSSF 62 P+L+IV LP G +I F + G + L I I + + + + F Sbjct: 5 PWLTIVAVLPIFGGSLIFFLPHKGNKVIRLY--TLFICIIELLLTTYAFYYYFQLDDPLM 62 Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID+F Y LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 63 QLTEDYKWIDFFDFYWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP++++I VWGG +R+Y+A KF LYT S+F+L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLISVWGGKKRLYSATKFILYTAGSSVFLLLG 181 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ A +P +++ +I F +FA+K P+ PFHTWLP+ H +A Sbjct: 182 VLGIGLYASNEPTLNFETSANQSYPVALEIIFYIGFLIAFAVKSPIIPFHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + P A FAP + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMEFLPRAHSIFAPWLMIVGTIQIIYAASASPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSLSDMGLNGAFLQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ + +MA++ LPG SGF+ E +V + + N + + Sbjct: 362 DEMGGMAVPVPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQNFFLIQKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G +L+ +YSL + R++ +G Sbjct: 422 MAIGTILTPIYSLSMLRQMFYG 443 >gi|170665234|gb|ACB29157.1| NADH dehydrogenase subunit D [Felicia heterophylla] Length = 500 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 150/442 (33%), Positives = 251/442 (56%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+++ Y WI +F + LG+DG+SI ++LT F+T L++W I + R + L + Sbjct: 63 QLVDNYKWISFFDFRWKLGIDGLSIGPILLTGFITTLATLAAWP-ITRDSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSQDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSVNQSYPMALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPLPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 422 MAIGMILTPIYLLSMXRQMFYG 443 >gi|15147279|ref|NP_150352.1| NADH dehydrogenase subunit 4 [Rhizophydium sp. 136] gi|15100121|gb|AAK84282.1|AF404306_24 NADH dehydrogenase subunit 4 [Rhizophydium sp. 136] Length = 510 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 155/420 (36%), Positives = 250/420 (59%), Gaps = 17/420 (4%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQEN----------FREYMIAFLVLESMVIGAF 129 G+DGIS+ +++L + P IL +WK I+ + + Y+ L++ I F Sbjct: 92 GLDGISLWMILLVNIIIPVTILMAWKEIKLDNNPFNSASKMLKNYIFLILLVNLASIIVF 151 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYK-FFLYTFFGSIFMLFAIVVMCW 187 D+LLFYI FEA LIPM+++IG +G ++RI A FFLYT FGS+FML AI+ + Sbjct: 152 FVSDILLFYIAFEAILIPMYLLIGFYGSRNKRIENAQNTFFLYTLFGSLFMLLAIITIYI 211 Query: 188 EKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + ++ D + P S IQ ++++ FF + AIK P FPFH WLP AH ++ T SV Sbjct: 212 QTGST---DYQTILTLPISNEIQGFLFLGFFIALAIKTPSFPFHGWLPLAHGESSTGASV 268 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA I+LK+ YG +RF+LPLFP AS YF P+I L++++IIY+ + ++ DIK ++AY Sbjct: 269 ILASILLKLATYGILRFILPLFPYASNYFLPLILTLAILSIIYSCISALSLIDIKSIVAY 328 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SSIAH +G+FS +G+ GA +SHG +S LF +G++Y+R T++I Y GL Sbjct: 329 SSIAHKNVGMMGLFSNDINGITGAFIGSISHGFISGGLFIIIGMLYNRYGTKNINYYRGL 388 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 V MP + +FT++N+G P T FIGE L+ S S + + + +L +Y + Sbjct: 389 VLFMPTFTFFFFIFTLSNLGFPFTMSFIGENLLFFSTINISPLITIFITSVSILLPIYFI 448 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + Y+++ +G + +DL+++E ++ P+ +L FG++P + +T +P +++ Sbjct: 449 YFYQRISYGKLSPYLLTLYQDLNIKEINLLLPLILLNTIFGLFPYMVFETTMIPFLNVLN 508 >gi|170665180|gb|ACB29130.1| NADH dehydrogenase subunit D [Baccharis neglecta] Length = 500 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 161/496 (32%), Positives = 269/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+++ Y WI +F + LG+DG+SI V+LT F+T L++W I + R + L + Sbjct: 63 QLVDDYKWISFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWP-ITRDSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ +I +F +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSVNQSYPVALEIIFYIGYFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGLITSQKYLLLPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|288803383|ref|ZP_06408816.1| NADH dehydrogenase (ubiquinone), M subunit [Prevotella melaninogenica D18] gi|288334203|gb|EFC72645.1| NADH dehydrogenase (ubiquinone), M subunit [Prevotella melaninogenica D18] Length = 489 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/396 (36%), Positives = 240/396 (60%), Gaps = 11/396 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++ +GVDGIS+++++L+ + +SW+ ++ +EY + F++L S V G F+S DM Sbjct: 63 AFSVGVDGISVVMILLSAIIVFTGTFASWQ-LEPMKKEYFLWFVLLSSGVFGFFISTDMF 121 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + Y+A K L GS ++ I+ + + T Sbjct: 122 TMFMFYEVALIPMYLLIGVWGTGPKEYSAMKLTLMLMGGSALLVLGILGIYYFSGATTMD 181 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 +++L M P +IQ + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 182 VMELARMHAMPKNIQNIFFPLVFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 241 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC+R + L P A + +APV L+ I+++Y +L + VQTD+K + AYSS++H G Sbjct: 242 LGGYGCLRIAMFLMPDALEMWAPVFLVLTTISVVYGALSACVQTDLKYINAYSSVSHCGM 301 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F C+G+IY R TRD+ GGL+ +P A Sbjct: 302 VLFALVMTTQTAITGAILQMLSHGLMTALFFACIGMIYHRAGTRDVRYLGGLMKVIPFLA 361 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYR 429 V +V +AN+GLPG SGF+ E + + F+N+ T ++A +V++A+Y L + Sbjct: 362 VSYVVAGLANLGLPGFSGFVAEMTIFVGSFENTGTFHRVATIIACTAIVITAVYILRVVG 421 Query: 430 KVVFGVSKCEKVQQLKDLSLRER----CMVYPIAVL 461 K++F +K +L D + ER C+++ +A L Sbjct: 422 KILFQKIPNKKFYELHDATWDERFAIGCLIFCVAGL 457 >gi|170665208|gb|ACB29144.1| NADH dehydrogenase subunit D [Corymbium glabrum] Length = 500 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 152/442 (34%), Positives = 252/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFIPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+ A++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSTASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 422 MAIGMILTPIYLLSMLRQMFYG 443 >gi|159901501|ref|YP_001547748.1| proton-translocating NADH-quinone oxidoreductase subunit M [Herpetosiphon aurantiacus ATCC 23779] gi|159894540|gb|ABX07620.1| proton-translocating NADH-quinone oxidoreductase, chain M [Herpetosiphon aurantiacus ATCC 23779] Length = 504 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 155/492 (31%), Positives = 278/492 (56%), Gaps = 11/492 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 +P+LS++ +P LG VI+F +++ ++ ++TI+F +L V+ +D + Sbjct: 10 GIPYLSLIWLIPLLGALVIMFLPK--EQKQAMRIISAVVATISFGIALLVFFAYDPNATG 67 Query: 62 F-----QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 + Q +E W+ SY +G DGIS+ L+VL + SW +I++ +EY Sbjct: 68 YMGTKMQFVEKLDWVPQLGMSYLVGADGISLPLIVLNGLVIFTGTFISW-NIEDRVKEYF 126 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 + L+L V G F++LD+ L ++F+E +++PM+++IG+WG + + Y A K +Y GS Sbjct: 127 VLLLLLVVGVYGVFMALDLFLMFVFYELAVLPMYLLIGIWGSTRKEYGAMKLTIYLMVGS 186 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 ++ +V + T ++++L + F Q ++ F FA+ MFPFHTW P Sbjct: 187 AALMIGMVAIYVVGGTFNMVEL-SQRVFSLEFQKIFFLPVFVGFAVLAGMFPFHTWSPTG 245 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV APTA S+ AG+++K+G YG +R L L P +Q++ P I ++L+ ++Y + ++MV Sbjct: 246 HVAAPTAVSMLHAGVLMKLGAYGALRAALWLMPNGAQFWLPGIAVMTLMNVVYGASIAMV 305 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG-VIYDRL 354 Q D K +I YSS++HMG V + + S ++ + GA+ QM +HG++++ F VG ++Y+R Sbjct: 306 QKDFKYVIGYSSVSHMGLVMLALASMNETALNGAVMQMFAHGVMTALFFAVVGRMVYERT 365 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 HTR + GGL+ MP VV ++ ++++MG+PGT+GF+ EF + V VA +A+ Sbjct: 366 HTRQLPELGGLMKVMPFAFVVFIIASLSSMGMPGTAGFMAEFTIFTGVMNQYPLVAAVAA 425 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + ++A Y L + G K L L+ +E+ +A++ + G++P I D Sbjct: 426 LSIPITAAYVLRVGYMAFMGEVKDPHYHDLPPLTWQEKFSGTVLAIVVIGVGLFPSIIMD 485 Query: 475 TFSVPLSSIIEN 486 + + I + Sbjct: 486 YIATGVQPIAQR 497 >gi|87124047|ref|ZP_01079897.1| putative NADH dehydrogenase I chain 4 (or M) [Synechococcus sp. RS9917] gi|86168616|gb|EAQ69873.1| putative NADH dehydrogenase I chain 4 (or M) [Synechococcus sp. RS9917] Length = 523 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 263/496 (53%), Gaps = 13/496 (2%) Query: 4 PFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWS-VFDKGRSS 61 P+LS++ LP V+ L S +A+ + I+F L V+S ++D+ Sbjct: 16 PWLSLIVLLPAATALVMPLLSGDDDHPSPWPRNLAVTVLAIDFGLMLAVFSRLYDRLDGG 75 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E +W+ + LG DG+S+ LVVL+ +T + +SWK ++ Y LV Sbjct: 76 LQLVERVNWLPVIGLEWSLGADGLSMPLVVLSGLVTLLSVCASWK-VRHKSNLYFGLLLV 134 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 S FLS D LLF++ +E L+P++++I +WGG R YAA KF LYT S+ +L Sbjct: 135 QASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGQNRQYAATKFILYTALASLLILI 194 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPF-SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + S+ + P S ++ F F +K+PMFP HTWLP+AH +A Sbjct: 195 SGLALALSGDSFSLNLTELAQRSPGGSFGLLCYLGFLVGFGVKLPMFPLHTWLPDAHGEA 254 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 S+ LAG++LKMGGY +RF + + P AP + L ++ IIY +L + Q ++ Sbjct: 255 NAPVSMLLAGVLLKMGGYALLRFNVQMLPEVHLTLAPALIILGIVNIIYGALNAFAQDNV 314 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+ IA SS++HMG+V +GI + + GAM QM+SHGL+++A+FF G Y+R T I Sbjct: 315 KRRIACSSVSHMGFVLLGIGAVDALSLSGAMLQMISHGLIAAAMFFITGSFYERTKTLSI 374 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GGL +P + +A++ LPG SGFI E + + V V+ Sbjct: 375 PNMGGLAKVLPITFAFFLTSCLASLALPGMSGFISEITIFLGVTSQEQFTTLFRVITVVV 434 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ G+VL+ +Y L L R+V FG + + + D+S RE + + V T+ GI+P Sbjct: 435 AAIGLVLTPIYLLSLCRRVFFG-PRIPALAFVDDMSPRELVIGLTLLVPTLTIGIWPRVA 493 Query: 473 RDTFSVPLSSIIENYT 488 D + ++ E + Sbjct: 494 MDVYEASTDALAETLS 509 >gi|169143080|ref|YP_001687500.1| NADH dehydrogenase subunit 4 [Oenothera parviflora] gi|193806250|sp|B0Z5H7|NU4C_OENPA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|159895606|gb|ABX10170.1| NADH dehydrogenase subunit 4 [Oenothera parviflora] Length = 500 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 139/382 (36%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI +F Y LG+DG+SI ++LT F+T L++W + + + + L + Sbjct: 63 QLTENYKWIHFFDFYWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRDAQLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFLMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ ++ +P +++ ++ F +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETLANQSYPVALEVIFYVGFLIAFAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHCLFSPGLIIVGAIQIIYAASTSPGQLNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSSI+HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSISHMGFIIIGIGSLSDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLLYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ ++ + +MA++ LPG SGF+ E LV + + +A L Sbjct: 362 DEMGGMAIPLPKLFTMLSILSMASLALPGLSGFVAELLVFFGIITSQKYLLMPKILIAFL 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMLRQMFYG 443 >gi|108802978|ref|YP_642915.1| proton-translocating NADH-quinone oxidoreductase subunit M [Rubrobacter xylanophilus DSM 9941] gi|108764221|gb|ABG03103.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rubrobacter xylanophilus DSM 9941] Length = 487 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 165/452 (36%), Positives = 256/452 (56%), Gaps = 13/452 (2%) Query: 27 GCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGIS 85 G R+ + + S + + + ++W+ G F +E WI +Y +GVDGIS Sbjct: 24 GAPPRAAHALGIAFSGLALLGAAWMWARGASGEG-FSQVEEVAWIPSLGVAYRVGVDGIS 82 Query: 86 ILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASL 145 + LV++T L F L I+E R Y+ FL+LE+ +G F++LD +LFY+FFE +L Sbjct: 83 LPLVLMTAVLF-FVSLVFSAGIRERARSYVALFLLLETASLGVFVALDAVLFYVFFEVTL 141 Query: 146 IPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSSIIDLYAMSKF 203 + M+ II WG +R AA FFLYT GS+ +L AI+ + E T + +L A Sbjct: 142 VGMYFIISGWGYEDRQRAALMFFLYTLLGSLPLLLAILGLYLGSEPNTFDMRELIANPPL 201 Query: 204 PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFL 263 +A +F +K P+FP HTWLP AHV+APTAGSV LAG++LK+G YG +RF Sbjct: 202 TGLAATLALLAMLVTFFVKTPVFPLHTWLPAAHVEAPTAGSVILAGVLLKLGTYGLVRFA 261 Query: 264 LPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY------VTIG 317 L + P A + AP + L+ + +Y + V++ Q+D+K+L+AY+S+ HMGY V Sbjct: 262 LQMTPDAFRDLAPYVAALAAFSALYGAFVALGQSDLKRLVAYTSVNHMGYVVLGVAVAAA 321 Query: 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMM 377 ++GA+ QM+SHG+V+ ALF VG++ DR HTR++ A+GGL+ +P + Sbjct: 322 ATGARAVALDGAVLQMVSHGVVTGALFLLVGMLQDRAHTREMGAFGGLLGVVPGLGWAFV 381 Query: 378 VFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSK 437 + A++GLPG + F EF + + + AV+A G+ ++A L + G + Sbjct: 382 LAAFASLGLPGLAHFPAEFQIFLGTLRVYPP-AVVAVLGIAVTAGLYLRAIQVAFLGEPR 440 Query: 438 CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 E+ ++L+DL RE V P+ LTV G+ P Sbjct: 441 GER-RKLRDLGARETLAVVPLLALTVLIGVVP 471 >gi|118580058|ref|YP_901308.1| proton-translocating NADH-quinone oxidoreductase subunit M [Pelobacter propionicus DSM 2379] gi|118502768|gb|ABK99250.1| NADH dehydrogenase subunit M [Pelobacter propionicus DSM 2379] Length = 534 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 158/426 (37%), Positives = 261/426 (61%), Gaps = 22/426 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++HL VDG++I L++LT L P + WK + ++ L LE+ ++G FL+ +++ Sbjct: 79 NFHLAVDGLNIYLLLLTGLLFPVVLGCCWKRPETQNNLFVAMALFLEATLLGTFLAQNLM 138 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 LF++F+E LIPMF+I+ +GG + AA+ FF+YT GSI L A+++M E + Sbjct: 139 LFFVFWEVVLIPMFIIVLAFGGENKRSAAFTFFMYTMAGSILFLAAVIMMGMESLNQTGA 198 Query: 194 ----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 L A+ K ++ Q +++IA + AIK P+FPFH+WLP A+ +AP AG+ +AG Sbjct: 199 WNFEFAHLMAL-KLDWNTQLFVFIAVMLACAIKCPLFPFHSWLPLAYYEAPPAGTALMAG 257 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 + KMG +G I+ LPL P ++ F P + ++I+I+Y +++++ QTD KKL+A+SS++ Sbjct: 258 ALSKMGAFGIIKLALPLCPDVARAFGPTVMLFAVISILYGAIIALKQTDFKKLVAFSSLS 317 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMGY+ +GIFS ++ + GA+FQ+LSHG V+ A F + + + R+ L + Sbjct: 318 HMGYIVLGIFSFHQAAIHGALFQILSHG-VAVAGLFLLLGLLELRLGREYLNLTALSTHA 376 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ------NSN------TVAVLASFGV 417 PR AV++M+F +A++ LP TSGF EFL++ FQ +N T +LAS G+ Sbjct: 377 PRLAVMLMLFILASVALPLTSGFTSEFLILFGAFQQGIAALQANQGATMLTSVLLASTGM 436 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 VL A Y L R +++G +K E V +KD+SL E P+ V+ ++ G+ P+PI + + Sbjct: 437 VLGATYMLRFGRAILYGQTK-EGV-GVKDMSLMEGIGFIPLLVMIIWIGVNPMPIMNKVT 494 Query: 478 VPLSSI 483 +S++ Sbjct: 495 TAVSAL 500 >gi|170665216|gb|ACB29148.1| NADH dehydrogenase subunit D [Dicoma capensis] Length = 484 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 151/442 (34%), Positives = 254/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP VI F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSVIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y++ KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSSTKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ + F++A++ LPG SGF+ E +V + + + + + Sbjct: 362 EEMGGVAIPLPKIFTMFSSFSVASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 422 MAIGMILTPIYLLSMLRQMFYG 443 >gi|322436014|ref|YP_004218226.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidobacterium sp. MP5ACTX9] gi|321163741|gb|ADW69446.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidobacterium sp. MP5ACTX9] Length = 544 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 155/421 (36%), Positives = 249/421 (59%), Gaps = 17/421 (4%) Query: 61 SFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWK--SIQENFREYMIA 117 SFQ + + WI YHLGVD +S+ LVVLT FL P +L+SWK SI E + + + Sbjct: 62 SFQFVIDHDWITAPSIRYHLGVDAMSMWLVVLTAFLAPLGVLASWKIPSINERAKTFYVL 121 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGSI 176 FL+ + ++G FL+LD+ L+Y FFE SL+PM ++I +G ++ R AA K+F+Y F S Sbjct: 122 FLLQQVAMLGLFLALDLFLYYAFFELSLVPMTILIATFGRTKNRRPAAIKYFVYNFIPSA 181 Query: 177 FMLFAIVVMCWEKKT---SSIIDLYAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTW 231 +L I+ + + T ++ L A S +AF +F +K+P+FP H W Sbjct: 182 ILLVGILWLYVKTGTFQFPALAGLAAAHNISPNGSALGLASLAFLIAFCVKVPVFPLHGW 241 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 L +A V+APTA + LAG K G Y +RF +FP S + AP++ L I I+Y +L Sbjct: 242 LKDAIVEAPTAAVMVLAG---KTGLYSILRFSFGIFPEQSHHIAPLMLALGAIGIVYGAL 298 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ + D+K+L AYS+++H+ ++T+GIF +G++G ++Q+L+HG+ SALF +G +Y Sbjct: 299 IATTRNDLKELAAYSTLSHLSFITLGIFGFTIAGLDGGIYQILNHGISGSALFLLLGFLY 358 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI----MSVFQNSN 407 +R T D+ GGL +P + ++ T++ +GLPG + F+GEFLV+ + F + Sbjct: 359 ERYGTYDMRDLGGLAQKLPWMVTLYVITTLSVIGLPGLNSFVGEFLVLSGSMQAAFAHHV 418 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFG-VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 VLA+ GV+LSA Y L + ++V +G + Q DL+ RE ++P+ + V G Sbjct: 419 FWTVLATTGVILSAAYMLIMIQRVFYGHLGVTSSGQPSIDLNAREHTALWPLVAVMVLMG 478 Query: 467 I 467 + Sbjct: 479 V 479 >gi|258651228|ref|YP_003200384.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nakamurella multipartita DSM 44233] gi|258554453|gb|ACV77395.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nakamurella multipartita DSM 44233] Length = 588 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 150/460 (32%), Positives = 253/460 (55%), Gaps = 21/460 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 MN +L ++ FLP +G V+ ++ G ++ +AL S + +W + + Sbjct: 1 MNSWYLVVLIFLPVVGALVL--AAMSGAPEKTVKLIALVFSLAELAVVVALWMSYRAATT 58 Query: 61 S--------FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 F+ WI YF ++ LGVDGIS+ ++ L L P + +SW+ Sbjct: 59 DAASQLDVPFRETFSVTWIPYFGINFSLGVDGISLTMIALIAVLMPIVLGASWEEKLPAG 118 Query: 112 RE---YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFF 168 R Y LVL+ ++G F + ++ +FY+ FE LIPM+ ++G +GG R YAA KFF Sbjct: 119 RTIGGYFALLLVLQGAMVGVFAATNVFVFYVMFEVMLIPMYFLVGAFGGVRRAYAATKFF 178 Query: 169 LYTFFGSIFMLFAIVVM------CWEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAI 221 LY+ G + ML +++ + + T + L +++ + P S Q W++ F +FAI Sbjct: 179 LYSLLGGLLMLASVIGLYVASGQVLGQGTFDWVTLQSIAAQIPESTQMWIFAGFAIAFAI 238 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K P+ P HTWLP+A +AP L G++ K+G +G +R LPL P AS A +I L Sbjct: 239 KAPLVPLHTWLPDAGTEAPVGAGTLLVGVLDKVGTFGFLRICLPLLPAASSKLAWLIILL 298 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 ++I I+Y ++V+ QTD+K+ + ++SIAH G++ +G+F+ + GA M++HG+ + Sbjct: 299 AVIGILYGAIVAAGQTDLKRFVTFTSIAHFGFIALGVFAFTTQSIAGAALYMVNHGIATG 358 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 LF VG++ R ++ + YGG+ P +V +A + +PGT+ FI EFLV++ Sbjct: 359 LLFLIVGMLTARGGSKLVGDYGGVWKVAPILGGFFLVAALATIAMPGTNSFISEFLVLIG 418 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV 441 F AVLA+ G+VL+A+Y LW++++ + G + V Sbjct: 419 TFSRHPAWAVLATIGIVLAAVYMLWIFQRTMTGPVRGAAV 458 >gi|290486881|gb|ADD29825.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Heuchera sanguinea] Length = 500 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 158/477 (33%), Positives = 261/477 (54%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPHRGNKIIRWYTICICILELLLTTYAFGYH-FQLDDPLIQ 63 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E Y WI++F Y LG+DG+SI ++LT F+T L+ + + + R + L + Sbjct: 64 FSEDYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAG-RPVTRDSRLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ ++ +P +++ ++ F +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGIGLYGSNEPTLNFETLANQSYPIALEILFYLVFLIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPRAHSIFSPWLLIVGTIQIIYAASTSSGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGISSLTDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + + +MA++ LPG SGF+ E LV + + + + Sbjct: 363 EMGGIAIPMPKIFTMFSILSMASLALPGMSGFVAELLVFFGIITSQKYLLMPKIIITCVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 423 AIGMILTPIYSLSMSRQMFYGYKLFNAPNSYFFDSGPRELFVSISIFLPVIGIGIYP 479 >gi|72381870|ref|YP_291225.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. NATL2A] gi|72001720|gb|AAZ57522.1| NADH dehydrogenase subunit M [Prochlorococcus marinus str. NATL2A] Length = 524 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 164/495 (33%), Positives = 276/495 (55%), Gaps = 15/495 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSF-FGVALGISTINF-IFSLFVWSVFDKGRSS 61 P+LS++ LP +G ++ F + +AL I +F I L + ++FD S Sbjct: 23 PWLSLIVLLPIVGALIMPFLPTQESKNSNLPRNIALVILLADFLIVVLALANLFDPNSES 82 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E W+ + LGVDGIS LVVL+ +T +SWK +++ R Y L+ Sbjct: 83 LQLVERLQWLPSIGLEWSLGVDGISAPLVVLSGLITFLSAAASWK-VKQKTRLYFALLLI 141 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 S FLS D LLF++ +E L+P++++I +WGG ++YAA KF LYT S+ +L Sbjct: 142 QASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGKRKLYAATKFILYTALASLLILI 201 Query: 181 A--IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + ++ T ++ ++ A S F + + ++ F F +K+P+FP HTWLP+AH + Sbjct: 202 SGLALALSGDQFTFNLSEIAAKS-FTGNFGIFCYLGFLIGFGVKLPIFPLHTWLPDAHGE 260 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A S+ LAG++LKMGGY IRF + + P AP + + ++ IIY +L + Q + Sbjct: 261 ANAPVSMLLAGVLLKMGGYALIRFNVQILPDTHLILAPALIIIGIVNIIYGALNAFAQDN 320 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+R +T Sbjct: 321 VKRRIACSSVSHMGFVLVGIGAINALGISGAMLQMISHGLIAAAMFFVTGSFYERTNTLS 380 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA-------V 411 I GGL +P + ++A++ LPG SGFI E V + + + + Sbjct: 381 IPNMGGLAKALPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEGFTSLFRAITIL 440 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 LA+ G+VL+ +Y L + R+V FG + + +K++ RE + + V T+ G +P Sbjct: 441 LAAIGLVLTPIYLLSMCRRVFFG-PRIPALSIVKEMDARELSIGLSLLVPTLVIGFWPRI 499 Query: 472 IRDTFSVPLSSIIEN 486 D + V +++ ++ Sbjct: 500 AIDLYEVSTNALAQS 514 >gi|227497905|ref|ZP_03928085.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] gi|226832671|gb|EEH65054.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] Length = 518 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 156/430 (36%), Positives = 250/430 (58%), Gaps = 15/430 (3%) Query: 43 INFIFSLF-----VWSV--FDKGRSS-FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTT 93 + +FSL VW+ FD + S Q+ E + WI S+ LGV+G+ + +++L Sbjct: 38 VGLLFSLATLGVGVWAATQFDVAQGSVIQLAETHSWIASMGVSWALGVNGLGLAMLLLAA 97 Query: 94 FLTPFCILSSWKSIQENFREYMIAF-LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 FLTP +L+SW + + + LVLE+ V+ F + D++LFYI FEA LIP++ +I Sbjct: 98 FLTPIVLLASWGEVPADRQGLFTGLVLVLEAFVVVIFAARDVVLFYICFEAMLIPVYFLI 157 Query: 153 GVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM---CWEKKTSSIID-LYAMSKFPFSIQ 208 G +GG R AA KF LY+ G + ML +V + + + ++D L ++ Sbjct: 158 GRFGGPNRRRAALKFLLYSLAGGLVMLIGVVALYVYGPGGEGAYLLDNLVGNINASTTVT 217 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 W++++FF +FAIK PM P HTWLP+ QA SV L G++ K+G YG I +LPLFP Sbjct: 218 RWIFVSFFIAFAIKAPMVPLHTWLPDTAEQATPGTSVLLIGVLDKIGTYGMIALVLPLFP 277 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG 328 AS++ APV+ L++I I+Y L ++ Q ++ +LI+Y+SI+H G++ +GIF+G G Sbjct: 278 EASRWAAPVVLVLAVIGILYGGLAAIGQDNLYRLISYTSISHFGFMVLGIFAGSSVAATG 337 Query: 329 AMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 AM M++HGL + L+ G + R T I GG+ +P A +V +A++ LPG Sbjct: 338 AMVYMVAHGLSIAGLYLVTGFLARRTSTVQISELGGMARVLPLVAGTWLVSGLASIALPG 397 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS 448 SGF+ E++V+ F S + V+A GV+++A+Y L Y++V G ++V DL Sbjct: 398 LSGFVPEWMVLTGTFSQSVALGVVAVLGVIIAAVYVLLPYQRVFTGAPAADRVGS-TDLD 456 Query: 449 LRERCMVYPI 458 RE+ ++ P+ Sbjct: 457 GREKLVLVPV 466 >gi|169629232|ref|YP_001702881.1| NADH dehydrogenase subunit M [Mycobacterium abscessus ATCC 19977] gi|169241199|emb|CAM62227.1| NADH-quinone oxidoreductase, M subunit NuoM [Mycobacterium abscessus] Length = 535 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 171/509 (33%), Positives = 276/509 (54%), Gaps = 33/509 (6%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYH 69 +P +G IL L +R+ ALG S + I ++ V FD +Q +E Sbjct: 12 LIPLVGAAAILV---LPAHQRTLAKYTALGTSLLVLIVAVGVAIAFDPVGPQYQFVESVS 68 Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--------FREYMIAFLV 120 WI F Y +G+DGI + LV+LTT L P +L+ W E + YM L+ Sbjct: 69 WIPAFGMKYAVGLDGIGLALVLLTTGLLPVLLLAGWNDGAEAPGYGHRPLAQRYMALMLI 128 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-----ERIYAAYKFFLYTFFGS 175 +E+MV+ +F +LD+LLFYIFFEA LIPM+ +IG +G + +R AA KF +Y FG Sbjct: 129 VEAMVLLSFSALDVLLFYIFFEAMLIPMYFLIGGFGSTHSDVKQRSRAAVKFLMYNLFGG 188 Query: 176 IFMLFAIV------VMCWEKKTSSIIDLYAMSKFPFS--------IQYWMWIAFFCSFAI 221 + ML A++ + DL +++ + + +++ F +FA+ Sbjct: 189 LVMLAAVIGLYVVTAQSPAGEHGGTFDLRDITEMVATGTLGIDPGLAKALFLGFMFAFAV 248 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K P++P HTWLP+A V A + +V + ++ K+G + +R+ + LFP AS+YF PVI L Sbjct: 249 KAPLWPLHTWLPDAAVHATPSSAVLMMAVVDKVGTFAMLRYCVQLFPDASRYFTPVIVTL 308 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 ++I I+Y ++V++ QTD+ +LIAY+SI+H G++ +GIF+ G G+ M++HG+ ++ Sbjct: 309 AVIGIVYGAVVAIGQTDVMRLIAYTSISHFGFIILGIFAMTSQGQSGSTLYMVNHGISTA 368 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 AL G + R +R I +YGG+ P A +V +A + LPG + FI EFLV++ Sbjct: 369 ALMLVAGFLVTRKGSRLIASYGGVQKVAPVLAGSFLVAGLATLSLPGLAPFISEFLVLVG 428 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F A A +VL+A+Y LW+Y++++ G + + DL RE +V P+ L Sbjct: 429 TFTRYPVAAACAVVALVLAAIYVLWMYQRMMTG-PLAPGNETIGDLKRRELTVVAPLVAL 487 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 + GIYP P+ D + + + K Sbjct: 488 LLVLGIYPKPLLDIVNPAVEQTLRTVNEK 516 >gi|156742073|ref|YP_001432202.1| proton-translocating NADH-quinone oxidoreductase subunit M [Roseiflexus castenholzii DSM 13941] gi|156233401|gb|ABU58184.1| proton-translocating NADH-quinone oxidoreductase, chain M [Roseiflexus castenholzii DSM 13941] Length = 505 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 155/449 (34%), Positives = 255/449 (56%), Gaps = 8/449 (1%) Query: 43 INFIFSLFVWSVFD-KGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCI 100 I+ +L V+ +D + FQ +E W+ + +Y LGVDGIS+ +++L + Sbjct: 48 ISLALTLLVYLAYDYRSPEKFQFLEETPWLPELGINYILGVDGISLPMLLLNGLVIFTGA 107 Query: 101 LSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER 160 L SW +I+E REY L+L + V G F+SLD+ L +IF+E +++PM+++IG+WG + + Sbjct: 108 LISW-NIEERTREYWALLLLLAAGVYGVFVSLDLFLLFIFYELAVLPMYLLIGIWGSTRK 166 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK---FPFSIQYWMWIAFFC 217 Y A K LY GS F++ +V + + T D+ +++ F +Q ++ F Sbjct: 167 EYGAMKLTLYLMGGSAFIILGMVAVYF-SGTLRTFDMRLLAQSALFTRDVQIIFFVPLFL 225 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 FA+ MFPFHTW P HV APTA S+ AG+++K+G YGC+R + +FP + Y+ Sbjct: 226 GFAVLAGMFPFHTWSPTGHVAAPTAVSMLHAGVLMKLGAYGCLRVAMWIFPEGANYWLLP 285 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 I +LI +Y + ++M Q D K +I YSS++HMG +G+ + G+ GA+ QM +HG Sbjct: 286 IAIATLINAVYGATIAMTQRDFKFMIGYSSVSHMGLTLMGLAAANTIGMTGAVLQMFAHG 345 Query: 338 LVSSALFFCVG-VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEF 396 ++++ F VG ++YDR HTR GGL MP A+V ++ +++MG+PG +GF EF Sbjct: 346 VMTALFFAVVGRMVYDRTHTRQFPELGGLFAVMPFAAIVFIIAGLSSMGMPGLAGFWAEF 405 Query: 397 LVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 + M ++Q +AVLA + ++A Y L +V FG K + + L L+ +E Sbjct: 406 NIFMGMWQRFPLIAVLAGISIPITAGYILIAVYRVFFGELKNPEFRTLPKLTAQEYAAGV 465 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + V+ + GIYP + + + I E Sbjct: 466 ILVVVLIISGIYPAYLTEPIEASVQPIAE 494 >gi|290486861|gb|ADD29815.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Meliosma aff. cuneifolia Moore 333] Length = 500 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 161/495 (32%), Positives = 269/495 (54%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F Y G ++ + + + + F + F Q Sbjct: 5 PWLTIIVVLPISAGSLIFFLPYRGNKVIRWYTICICLLELLLTTYAFCYH-FQLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI++F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LEEEYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 M ++ A +P +++ + F ++A+K P+ P HTWLP+ H +A Sbjct: 183 SGMGLYGSNEPTLNFETSASQSYPVALEIIFYFGFLIAYAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSPGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG+ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFTIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV-------LA 413 GG+ MP+ ++ F+MA++ LPG SGF+ E +V + + + + + Sbjct: 363 EMGGIAIPMPKIFMMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYLVLPKIVIIFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +YSL + R++ +G D RE + I + + GIYP + Sbjct: 423 AVGMILTPIYSLSMSRQMFYGYKLFNAPNYSFFDSGPRELFVSISIFLPVIGIGIYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + +I+ NY Sbjct: 483 LSLSVDKVEAILSNY 497 >gi|118579079|ref|YP_900329.1| proton-translocating NADH-quinone oxidoreductase subunit M [Pelobacter propionicus DSM 2379] gi|118581582|ref|YP_902832.1| proton-translocating NADH-quinone oxidoreductase subunit M [Pelobacter propionicus DSM 2379] gi|118501789|gb|ABK98271.1| NADH dehydrogenase subunit M [Pelobacter propionicus DSM 2379] gi|118504292|gb|ABL00775.1| NADH dehydrogenase subunit M [Pelobacter propionicus DSM 2379] Length = 534 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 158/426 (37%), Positives = 261/426 (61%), Gaps = 22/426 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++HL VDG++I L++LT L P + WK + ++ L LE+ ++G FL+ +++ Sbjct: 79 NFHLAVDGLNIYLLLLTGLLFPVVLGCCWKRPETQNNLFVAMALFLEATLLGTFLAQNLM 138 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 LF++F+E LIPMF+I+ +GG + AA+ FF+YT GSI L A+++M E + Sbjct: 139 LFFVFWEVVLIPMFIIVLAFGGENKRSAAFTFFMYTMAGSILFLAAVIMMGMESLNQTGA 198 Query: 194 ----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 L A+ K ++ Q +++IA + AIK P+FPFH+WLP A+ +AP AG+ +AG Sbjct: 199 WNFEFAHLMAL-KLDWNTQLFVFIAVMLACAIKCPLFPFHSWLPLAYYEAPPAGTALMAG 257 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 + KMG +G I+ LPL P ++ F P + ++I+I+Y +++++ QTD KKL+A+SS++ Sbjct: 258 ALSKMGAFGIIKLALPLCPDVARAFGPTVMLFAVISILYGAIIALKQTDFKKLVAFSSLS 317 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMGY+ +GIFS ++ + GA+FQ+LSHG V+ A F + + + R+ L + Sbjct: 318 HMGYIVLGIFSFHQAAIHGALFQILSHG-VAVAGLFLLLGLLELRLGREYLNLTALSTHA 376 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ------NSN------TVAVLASFGV 417 PR AV++M+F +A++ LP TSGF EFL++ FQ +N T +LAS G+ Sbjct: 377 PRLAVMLMLFILASVALPLTSGFTSEFLILFGAFQQGIAAFQANAGATMLTSVLLASTGM 436 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 VL A Y L R +++G +K E V +KD+SL E P+ V+ ++ G+ P+PI + + Sbjct: 437 VLGATYMLRFGRAILYGQTK-EGV-GVKDMSLMEGIGFIPLLVMIIWIGVNPMPIMNKVT 494 Query: 478 VPLSSI 483 +S++ Sbjct: 495 TAVSAL 500 >gi|23013099|ref|ZP_00053043.1| COG1008: NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Magnetospirillum magnetotacticum MS-1] gi|46202536|ref|ZP_00208556.1| COG1008: NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Magnetospirillum magnetotacticum MS-1] Length = 520 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 157/415 (37%), Positives = 245/415 (59%), Gaps = 20/415 (4%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 VALG S + ++ +W+ FD G + Q WI SY +GV G+S+ L++LT Sbjct: 30 VALGGSVLTLGAAVILWTGFDPGAGNLQWRMTLPWIPSLGASYDVGVGGLSLALILLTAV 89 Query: 95 LTPFCILSSWKSIQENFREYMIAFL--VLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 L ++ ++ + E+ R + AFL +L + +IG F + D+LLFY+FFE L+PM+ I+ Sbjct: 90 L--LTVVMAY-VLPEHDRAHAHAFLFLLLATGLIGLFAAQDLLLFYLFFEVGLVPMYFIV 146 Query: 153 GVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-----IIDLYAMSKFPFSI 207 G+WGG R YAA KFFLYT GS+ ML + + + + S I+ + + P + Sbjct: 147 GIWGGERRRYAALKFFLYTRAGSLAMLLSFLALYLAMEPHSFSLPAIVQARPLDRTPLA- 205 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 +++A F +K+P+ P H WLP+AHV+APT GSV LAG+ LKMGGYG + LLP Sbjct: 206 GGLVFLALLLGFGVKLPVVPLHNWLPDAHVEAPTEGSVVLAGLQLKMGGYGMLAVLLPAL 265 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P F V+ L+L++++Y +L ++ Q+D+K+L+AY+S+ HMG+VT+G+ SG E Sbjct: 266 PETVARFGWVLVALALVSLLYGALAALAQSDMKRLVAYTSVNHMGFVTLGVAVAALSGDE 325 Query: 328 --------GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 GA QM+SHG ++ +F VG++ R TRD+ +GGL+ +MP ++ + + Sbjct: 326 GVRRLALNGAAVQMVSHGFLTGGMFLLVGMLQHRAGTRDLDRFGGLIGSMPVFSGLFGLL 385 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++GLPG SGFI EF + + Q S VA LA +V++ L L ++ G Sbjct: 386 AFGSLGLPGLSGFIAEFQAVGAALQLSAWVAGLAVLALVVTTAVYLRLVTGLLMG 440 >gi|309792507|ref|ZP_07686971.1| proton-translocating NADH-quinone oxidoreductase, chain M [Oscillochloris trichoides DG6] gi|308225495|gb|EFO79259.1| proton-translocating NADH-quinone oxidoreductase, chain M [Oscillochloris trichoides DG6] Length = 503 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 151/455 (33%), Positives = 260/455 (57%), Gaps = 5/455 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 V G + I+ + SL ++ +D + FQ +E WI +Y LGVDGIS+ ++VL Sbjct: 41 VGTGFAFISLVLSLLIFFAYDPKVAGFQFVERLDWIPQIGITYLLGVDGISLAMLVLNGV 100 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 + L SW +I+ +EY I L+L + V G F+SLD+ LF++F+E +++PM+++IG+ Sbjct: 101 VIFTGSLMSW-NIESRAKEYWIWLLLLTTGVYGVFVSLDLFLFFVFYELAVLPMYLLIGI 159 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSIIDLYAMSKFPFSIQYWMW 212 WG + + Y A K L+ GS + ++ + ++ +T +I L Q + Sbjct: 160 WGSTRKEYGAMKLTLFLMAGSAMAIIGMLGIYFQTGLRTFDMIALARNVTMSAEYQRIFF 219 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 F FA+ MFPFHTW P HV APTA S+ AG+++K+G YGC+R + L P ++ Sbjct: 220 PLLFLGFAVLSGMFPFHTWSPTGHVAAPTAVSMLHAGVLMKLGAYGCLRAAMWLMPEGAR 279 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 + P++ L+++ ++Y + ++M Q D K +I YSS++HMG V + + SG + G+ GA+ Q Sbjct: 280 DWLPIMAVLTILNVVYGATIAMAQRDAKFIIGYSSVSHMGLVMMALASGTQIGLLGAVLQ 339 Query: 333 MLSHGLVSSALFFCVG-VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 M +HG++++ F VG +IY+R HTR + GGL MP AV+ ++ +++MG+PG +G Sbjct: 340 MFAHGIMTALFFSVVGRMIYERTHTRQLPELGGLGRVMPFAAVMFILGGLSSMGMPGFAG 399 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 F EF + + V++ +AV+A+ + ++ Y L V F K + L L+ +E Sbjct: 400 FWAEFAIFIGVWERYPLIAVIAALSIPITGAYILRAVYSVFFDEVKNPEFLNLPKLTWQE 459 Query: 452 RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 +A + + GIYP + D ++ ++ I + Sbjct: 460 YSGALILASILILVGIYPGFLTDMINMGVAPIAQQ 494 >gi|302345407|ref|YP_003813760.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella melaninogenica ATCC 25845] gi|302149663|gb|ADK95925.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella melaninogenica ATCC 25845] Length = 503 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/396 (36%), Positives = 240/396 (60%), Gaps = 11/396 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++ +GVDGIS+++++L+ + +SW+ ++ +EY + F++L S V G F+S DM Sbjct: 77 AFSVGVDGISVVMILLSAIIVFTGTFASWQ-LEPMKKEYFLWFVLLSSGVFGFFISTDMF 135 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + Y+A K L GS ++ I+ + + T Sbjct: 136 TMFMFYEVALIPMYLLIGVWGTGPKEYSAMKLTLMLMGGSALLVLGILGIYYFSGATTMD 195 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 +++L M P +IQ + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 196 VMELARMHAMPKNIQNIFFPLVFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 255 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC+R + L P A + +APV L+ I+++Y +L + VQTD+K + AYSS++H G Sbjct: 256 LGGYGCLRIAMFLMPDALEMWAPVFLVLTTISVVYGALSACVQTDLKYINAYSSVSHCGM 315 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F C+G+IY R TRD+ GGL+ +P A Sbjct: 316 VLFALVMTTQTAITGAILQMLSHGLMTALFFACIGMIYHRAGTRDVRYLGGLMKVIPFLA 375 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYR 429 V +V +AN+GLPG SGF+ E + + F+N+ T ++A +V++A+Y L + Sbjct: 376 VSYVVAGLANLGLPGFSGFVAEMTIFVGSFENAGTFHRVATIIACTAIVITAVYILRVVG 435 Query: 430 KVVFGVSKCEKVQQLKDLSLRER----CMVYPIAVL 461 K++F +K +L D + ER C+++ +A L Sbjct: 436 KILFQKIPNKKFYELHDATWDERFAIGCLIFCVAGL 471 >gi|27885243|gb|AAO26102.1| NADH dehydrogenase subunit 4 [Greenmaniella resinosa] Length = 417 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 231/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+L F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLIGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFPLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPMALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMLRQMFYG 391 >gi|300864588|ref|ZP_07109447.1| NAD(P)H-quinone oxidoreductase subunit D4 [Oscillatoria sp. PCC 6506] gi|300337412|emb|CBN54595.1| NAD(P)H-quinone oxidoreductase subunit D4 [Oscillatoria sp. PCC 6506] Length = 500 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 168/476 (35%), Positives = 257/476 (53%), Gaps = 22/476 (4%) Query: 6 LSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSV-----FDKGR 59 LS + +LP LG V+ F R + +A F F++F+W+ FD Sbjct: 2 LSTLLWLPVLGAIVVGFLPGNQTANRLRYIALA-------FAFAIFMWTAWLLTQFDLTA 54 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 S Q+ EY WI +Y+LGVDG+S+ LVVL++FLT I S ++ E R Y Sbjct: 55 SGLQLQEYLPWIPQLGLNYNLGVDGLSMPLVVLSSFLTAIVIYGSGDAV-ERPRLYYPLM 113 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L++ + + GAF++ ++LLF +F+E LIP +++I +WG +R YAA KF LYT I + Sbjct: 114 LLVNAGIAGAFVAQNLLLFILFYELELIPFYLLIAIWGSQKREYAAIKFLLYTAVSGILV 173 Query: 179 LFAIVVMCWEKKTSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L A + W +SS D++ + S Q + I FAIKIP+ P HTWLP+A+ Sbjct: 174 LAAFLGTAWLSHSSSFDYSDIHTQT-LSLSTQLILLIVLLVGFAIKIPLVPLHTWLPDAY 232 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V++ T + L GI+ K+G YG +RF L + P A AP + + +++Y +L ++ Q Sbjct: 233 VESSTPVVIMLGGILAKLGAYGLVRFGLQMLPEAWAILAPSLAIIGTFSVLYGALSAIAQ 292 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 DIK+++AYSSI HMGY+ + +G + GA+ QM+SHGL+ + LF+ VG I ++ T Sbjct: 293 KDIKRMVAYSSIGHMGYILVAAAAGTPLAMVGAVAQMVSHGLILALLFYLVGAIETKVGT 352 Query: 357 RDIFAYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 RD+ GL V +P + ++++ MA+ G+PG GFI EFLV F +L Sbjct: 353 RDLDILNGLMNPVRGLPLISSLLVLGGMASAGIPGLVGFIAEFLVFQGCFSVFPIPTLLC 412 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 F L+A+Y L L + FG K+ + E +AV G+ P Sbjct: 413 IFASGLTAVYFLILLNRTCFG-KLDNKLAYYPKVKFAETLPALVLAVTIFVLGVQP 467 >gi|295697419|ref|YP_003590657.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacillus tusciae DSM 2912] gi|295413021|gb|ADG07513.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacillus tusciae DSM 2912] Length = 504 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 155/455 (34%), Positives = 253/455 (55%), Gaps = 23/455 (5%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY-----------------FCSYH 78 V + +S++ F+ SL +W FD+G + Q E+ W + Y Sbjct: 33 VGIAVSSLAFVLSLAIWFQFDRGLGTLQFTEHGQWFTFPLPGLEPIQSGPSVILVRVGYD 92 Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 LGVDG+S+ L+ ++T + +++SW+++ E + Y + FLVLE+ V G + + ++LLF+ Sbjct: 93 LGVDGLSLPLLAMSTLVAAAAMVASWRTV-ERVKAYTLWFLVLETGVNGIWTAQNLLLFF 151 Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 IFFE +LI +F ++G+WG R+ AAY+ LY GS+ ML V + T + ++ Sbjct: 152 IFFELALIALFFLVGIWGNEGRVRAAYELLLYNGLGSLVMLIVFVALFLATGTYDVREIR 211 Query: 199 AM---SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 A P Q W+ I +F IK+P+FPFHTW+ N H A S+ L+G++LK+G Sbjct: 212 AAFERQALPPGEQMWLVIGLLVAFGIKLPIFPFHTWVKNVHPAASAPVSMMLSGVLLKVG 271 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 YG IRF L FP AP++ L LI + Y +L++ V D K++IAYSSI+ MG V Sbjct: 272 AYGLIRFALGFFPDTFARLAPLLVALGLINVFYGALLAFVDRDFKRIIAYSSISQMGIVL 331 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 +G+ + G+ GA+FQ++SHGL+S+ LFF G+ Y HT + GL MPR A Sbjct: 332 LGLAALNPIGLLGALFQLVSHGLISALLFFLAGLTYAETHTSSLDRLSGLGARMPRTAGF 391 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNS-NTVAVLASFGVVLSALYSLWLYRKVVFG 434 +M +A++G+P SGF+GE+L ++ +F A++ + +V SALY L + + G Sbjct: 392 LMFAALASLGVPLLSGFVGEWLALLGLFTTPFRPFAIIGALSIVASALYILRAVMRAMHG 451 Query: 435 VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + + +D + + +++ V G++P Sbjct: 452 -PLPDALAHAQDARSVDMAPIAALSLGIVLLGVFP 485 >gi|134299883|ref|YP_001113379.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfotomaculum reducens MI-1] gi|134052583|gb|ABO50554.1| NADH dehydrogenase subunit M [Desulfotomaculum reducens MI-1] Length = 504 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 162/508 (31%), Positives = 286/508 (56%), Gaps = 22/508 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M++P L+I P L FVI+F + VA + + SL+V+ +D+ Sbjct: 1 MSIPVLTITLLSPMLAAFVIMFIPK--EEEKLCKWVAAAGTGTALLLSLYVYFGYDQTLG 58 Query: 61 SFQMIEY---YHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 Q +++ WI D SY++ VDG+S+ +++LT + + +SW ++ +E MI Sbjct: 59 GLQWVDFGGPIPWIRDLGVSYYMAVDGLSLPMLLLTNLIGFSAVFASW-NVTLRAKELMI 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI---YAAYKFFLYTFF 173 L+L + V+G F++ D+ +F +F+E +IP+++++ +WG S+R+ YA K +Y Sbjct: 118 YLLILIAGVMGTFIAQDLFIFLLFYEVVVIPIYIMVIIWGSSKRVTKEYAGMKLTIYLLI 177 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMS-------KFPFSIQYWMWIAFFCSFAIKIPMF 226 GS F+L ++ K+ +I + MS FP Q +M+ F + M+ Sbjct: 178 GSAFLLVGVIATF--VKSVAITGVPNMSFEALAQVAFPEQFQIYMFALMLIGFGSLLSMW 235 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 PFH+W P+ + APTA S+ AG++ K+GGYG IRF + + PL ++++AP I L +I + Sbjct: 236 PFHSWSPDGYAGAPTAVSMIHAGVLKKIGGYGLIRFAVFVLPLGAKFWAPYIAVLGVIGV 295 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 YA++ ++ Q D+K ++ YSS++HMGYV +G+ S GV GA+ M +HG++++ F Sbjct: 296 AYAAMGALAQKDLKYVVGYSSVSHMGYVLLGVASLQVIGVNGAVANMFAHGVMAALFFSM 355 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 +G IY++ HTR I GG+ H PR +V M+ +A++GLPG F+ EF++ + F++ Sbjct: 356 IGFIYEKTHTRWIPDLGGISHQAPRLSVGFMMAALASLGLPGLISFVPEFVIFVQSFKSF 415 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 +AV+A G++++ALY L +FG ++ E+ +KD+ E + + + V G Sbjct: 416 GLLAVVAIAGIIITALYVLRAGANTLFGPAR-EEYNHIKDIRGAELVPLVVLGSVLVIGG 474 Query: 467 IYPVPIRDTFSVPLSSIIE--NYTLKTG 492 I P + D + ++ I+ N L+ G Sbjct: 475 ILPSLLFDMVNSGVAPILAHINEALQLG 502 >gi|15612258|ref|NP_223911.1| NADH dehydrogenase subunit M [Helicobacter pylori J99] gi|4155783|gb|AAD06759.1| NADH oxidoreductase I [Helicobacter pylori J99] Length = 512 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 169/457 (36%), Positives = 269/457 (58%), Gaps = 23/457 (5%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ-- 63 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQTAGMQFE 63 Query: 64 -MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 M E + I +YH+GVDGI++ L++L + +L S ++E ++++I L+LE Sbjct: 64 EMKELAYQIG--VNYHVGVDGIALFLLLLNAIV----VLLSVIYVKERRKDFVICLLLLE 117 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +++G F SL+++ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I Sbjct: 118 GILMGVFSSLNVIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGI 177 Query: 183 VVMCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + + ++ + I+D Y ++ F I+ W+++AF A+KIP+FP HTWLP A+ Sbjct: 178 LYIGYDYANNYGMMSFDILDWYQLN-FSSGIKTWLFVAFLIGIAVKIPLFPLHTWLPYAY 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q Sbjct: 237 SNAPTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+K LIAYSS +HMG V +G+FS GV GA+F M +HG++ LF G++ +R + Sbjct: 297 KDLKTLIAYSSFSHMGVVVLGVFSFNVEGVSGAVFMMFAHGVIVMGLFLLAGILEERASS 356 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 +I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A Sbjct: 357 LEIARFGSIAKSAPVFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTS 416 Query: 417 VVLSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 ++LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 417 IILSAVYMLTSYKDVFFGNLKTGNNQISVFEDLNARE 453 >gi|169142759|ref|YP_001687186.1| NADH dehydrogenase subunit 4 [Oenothera argillicola] gi|193806247|sp|B0Z4S5|NU4C_OENAR RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|159792997|gb|ABW98753.1| NADH dehydrogenase subunit 4 [Oenothera argillicola] Length = 516 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 138/382 (36%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI +F Y LG+DG+SI ++LT F+T L++W + + + + L + Sbjct: 63 QLTENYKWIHFFDFYWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRDAQLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFLMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ ++ +P +++ ++ F +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETLANQSYPVALEVIFYVGFLIAFAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHCLFSPGLIIVGAIQIIYAASTSPGQLNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSSI+HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSISHMGFIIIGIGSLSDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLLYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ ++ + +M+++ LPG SGF+ E LV + + +A L Sbjct: 362 DEMGGMAIPLPKLFTMLSILSMSSLALPGLSGFVAELLVFFGIITSQKYLLMPKILIAFL 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMLRQMFYG 443 >gi|156598164|gb|ABU85346.1| NADH-plastoquinone oxidoreductase subunit 4 [Elaeis oleifera] Length = 499 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 249/441 (56%), Gaps = 22/441 (4%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID F + LG+DG+SI ++LT F+T L++W + N + + L + Sbjct: 62 QLEEDYKWIDIFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRNSQLFYFLMLAM 120 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 180 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +D ++ +P +++ ++ FF ++A+K P+ P HTWLPN H +A Sbjct: 181 VLGMGLYGSNEPTLDFERLANQSYPVALEIILYFGFFIAYAVKSPIIPLHTWLPNTHGEA 240 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+L+S+ Q + Sbjct: 241 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVGTMQIIYAALISLGQRNF 300 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG+ IGI S G+ GA+ Q+LSHG + +ALFF G DR+ + Sbjct: 301 KKRIAYSSVSHMGFTIIGIGSITDMGLNGAILQILSHGFIGAALFFLAGTSCDRIRLVYL 360 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 DEMGGISIPMPKIFTMFSSFSMASLALPGMSGFVAESVVFFGIITSPKYLLIPKILITFV 420 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRER----CMVYPIAVLTVFFG 466 + GV+L+ +Y L + R++ +G K V D RE C+ PI + G Sbjct: 421 MAIGVILTPIYLLSMSRQMFYGY-KLFNVPHSNFFDSGPRELFVSICIFLPI----IGIG 475 Query: 467 IYPVPIRDTFSVPLSSIIENY 487 IYP + + +I+ NY Sbjct: 476 IYPDFVLSLSVDRVQAILSNY 496 >gi|86748483|ref|YP_484979.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris HaA2] gi|86571511|gb|ABD06068.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris HaA2] Length = 481 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 165/462 (35%), Positives = 245/462 (53%), Gaps = 11/462 (2%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 LP +G FV F + G G R + + I+T + L + V + Y W Sbjct: 8 LLPAIGGFVAFFIA--GRGERERW---VTIATFALMLVLLMAIVAGAPEGRWYAKVSYPW 62 Query: 71 IDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAF 129 + F S +DG+S L+ ++ L +++SW I+ + + IG F Sbjct: 63 VPSFGISLDFAMDGLSAALIAISAGLGIISVMASWSEIRTQSGLFHACLCWTVAATIGVF 122 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC--W 187 LS D+L+F F+EA L+P F +I VWG +R AA KF ++ +L A + Sbjct: 123 LSFDLLIFAFFWEAMLVPAFTLIAVWGHGDREGAALKFLIFNAVAGFGLLAAAFALASMA 182 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + T S +L M K S+Q WM + F +F +K+ + PFH WLP AH APTAGS+ L Sbjct: 183 DHMTFSAFELAEM-KLSTSVQVWMLLGFSLAFLVKLSVPPFHAWLPEAHTLAPTAGSILL 241 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AGI+LK G YG RF LFP + AP L +Y LV+ Q D K+L+AY+S Sbjct: 242 AGILLKTGAYGLFRFAPMLFPQGLEAVAPYGIALGAAGALYGGLVACGQNDAKRLVAYTS 301 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 IAHM V +GI +G+ V GA +M++H +SALF +G +Y+R HTRD+ GGL Sbjct: 302 IAHMSIVLMGIAAGVHYAVAGAAVEMIAHSFSASALFLLIGALYERTHTRDLRQLGGLQQ 361 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 PR+A +F A + LPGT+ F+GE LV++ +FQ + A+LA +V+S +Y+ L Sbjct: 362 IAPRFAAAFALFCSALLALPGTANFVGEALVVVGIFQVNWVFALLALSTLVVSVIYATRL 421 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + +VFG + + DL+ RE V + + T+ G+YP Sbjct: 422 LKGLVFGQPRLGA--PVADLTWREYGPVLAMGLATLVIGLYP 461 >gi|255007678|ref|ZP_05279804.1| putative NADH-ubiquinone oxidoreductase subunit [Bacteroides fragilis 3_1_12] Length = 494 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 161/479 (33%), Positives = 261/479 (54%), Gaps = 17/479 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 + FLS+ +P L +L YL G ++ GV + ST I S+ + ++ R + Sbjct: 1 MNFLSLFVLIPLL----MLGGLYLAKGIKAIRGVMVAGSTALLILSIVLTFLYLGERQAG 56 Query: 63 QMIEYYHWID------YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 E D SY +GVDGIS+ +++L+ + +SWK +Q +EY + Sbjct: 57 ATAEMLFRADTVWYAPLHISYSVGVDGISVAMLLLSAVIVFTGTFASWK-LQPLTKEYFL 115 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 F +L V G F+S+D+ ++F+E +LIPM+++IGVWG + YAA K L GS Sbjct: 116 WFTLLSMGVFGFFISIDLFTMFMFYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSA 175 Query: 177 FMLFAIVVMCWEK--KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L I+ + + T +I+++ + PF+ Q + F F + +FPFHTW P+ Sbjct: 176 FLLIGILGIFFGAGGTTMNILEIARLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPD 235 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 H APTA S+ AG+++K+GGYGC R + L P A+ + L+ I+++Y + + Sbjct: 236 GHASAPTAVSMLHAGVLMKLGGYGCFRIAMYLMPEAANELGWIFLILTGISVVYGAFSAC 295 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 VQTD+K + AYSS++H G V I ++ GA+ QMLSHGL+++ F +G+IY R Sbjct: 296 VQTDLKYINAYSSVSHCGLVLFAILMMNQTAATGAVLQMLSHGLMTALFFALIGMIYGRT 355 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN----SNTVA 410 HTRD+ GL+ MP +V ++ +AN+GLPG SGF+ E + + FQN T+ Sbjct: 356 HTRDVRELSGLMKVMPFLSVCYVIAGLANLGLPGLSGFVAEMTIFVGSFQNFDVFHRTLT 415 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++A +V++A+Y L L K+++G + L D + ER V + + G+ P Sbjct: 416 IIACSSIVITAVYILRLVGKILYGTCTNKHHLALTDATWDERFAVICLIICVAGLGMAP 474 >gi|148242041|ref|YP_001227198.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. RCC307] gi|147850351|emb|CAK27845.1| NAD(P)H-quinone oxidoreductase chain 4 [Synechococcus sp. RCC307] Length = 505 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 153/436 (35%), Positives = 241/436 (55%), Gaps = 16/436 (3%) Query: 47 FSLFVWSV---FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 L +WS FD S Q++E W+ + L DGIS LV+L+ +T + + Sbjct: 40 LGLMLWSFSRHFDPALGSLQLVERIDWLPAMGLQWSLAADGISAPLVLLSGLVTLLTVAA 99 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 SW ++ R Y L S FLS D LLF++ +E L+P++++I +WGG R Y Sbjct: 100 SWD-VERKPRLYFALLLAQASAQAVVFLSQDFLLFFLAWELELVPVYLLIAIWGGQRRQY 158 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKK--TSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 AA KF LYT S+ +L + + + + T ++ +L + S + S ++ F F Sbjct: 159 AATKFILYTATASLLILISGLALAFHGDGFTLNLAELASRS-YGGSFGLLCYLGFLIGFG 217 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+PMF HTWLP+AH +A S+ LAG++LKMGGY IRF + + P A AP + Sbjct: 218 VKLPMFLLHTWLPDAHGEANAPISMLLAGVLLKMGGYALIRFNVQMLPDAHLQLAPALMV 277 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 L ++ II+ +L + Q ++K+ IA SS++HMG+V +G+ + G+ GAM QM+SHGL++ Sbjct: 278 LGIVNIIWGALNAFAQDNVKRRIACSSVSHMGFVLLGVAAVNDLGLSGAMLQMISHGLIA 337 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 + LFF GV Y+R T I GGL +P + ++ +A++ LPG SGF+ E V + Sbjct: 338 AGLFFVTGVFYERTKTLSIPNMGGLAKVLPITFALFVITCLASLALPGMSGFVSEITVFL 397 Query: 401 SVFQNSN-------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 + N VLA+ G+VL+ +Y L + R+V FG + + +L D+S RE Sbjct: 398 GITSNDAFTTGFRVITIVLAAIGLVLTPMYLLSMCRRVFFG-PRIPALAKLGDMSPRELT 456 Query: 454 MVYPIAVLTVFFGIYP 469 + + V T+ G +P Sbjct: 457 IALVLVVPTLMIGFWP 472 >gi|317014664|gb|ADU82100.1| NADH:ubiquinone oxidoreductase subunit M [Helicobacter pylori Gambia94/24] Length = 512 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 167/457 (36%), Positives = 269/457 (58%), Gaps = 23/457 (5%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ-- 63 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQTAGMQFE 63 Query: 64 -MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 M E + I +YH+GVDGI++ L++L + +L S ++E +++ I L+LE Sbjct: 64 EMKELAYQIG--VNYHVGVDGIALFLLLLNAIV----VLLSVIYVKERRKDFAICLLLLE 117 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +++G F SL+++ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I Sbjct: 118 GILMGVFSSLNVIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGI 177 Query: 183 VVMCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + + ++ + ++D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 178 LYIGYDYANNYGMMSFDVLDWYQLN-FSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAY 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q Sbjct: 237 SNAPTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYTQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF VG++ +R + Sbjct: 297 KDLKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGIIVMGLFLLVGILEERASS 356 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 +I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A Sbjct: 357 LEIARFGSIAKSAPVFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTS 416 Query: 417 VVLSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 ++LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 417 IILSAVYMLTSYKNVFFGNLKTGNNQISVFEDLNARE 453 >gi|114329797|ref|YP_740615.1| NADH-plastoquinone oxidoreductase subunit 4 [Platanus occidentalis] gi|122165993|sp|Q09FZ6|NU4C_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|114054435|gb|ABI49829.1| NADH-plastoquinone oxidoreductase subunit 4 [Platanus occidentalis] Length = 500 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 152/439 (34%), Positives = 246/439 (56%), Gaps = 12/439 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI+ F + LG+DG+SI ++LT F+T L++W I + R + L + Sbjct: 63 QLEEDYKWINIFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-ITRDSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M ++ A +P +++ + F ++A+K P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPTLNFETSANQSYPVALEIMFYFGFLIAYAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG+ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFTIIGIGSITDAGLNGAVLQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 DEMGGIAISMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSPKYFLMPKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNAPNSYFFDSGPRELFVSISIFLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENYTLK 490 + + +I+ NY K Sbjct: 482 VLSLSVDKVEAILSNYFYK 500 >gi|170665318|gb|ACB29199.1| NADH dehydrogenase subunit D [Scaevola aemula] Length = 455 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 153/444 (34%), Positives = 246/444 (55%), Gaps = 12/444 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 F S Q++E Y WI +F + LG+DG+SI V+LT F+T L++W + N + Sbjct: 7 FQLDDSLIQLVEDYKWIHFFDFRWKLGIDGLSIGPVLLTGFITALATLAAWP-VTRNSQL 65 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 + L + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT Sbjct: 66 FHFLMLAMYSGQIGSFSSQDLLLFFIMWEFELIPVYLLLAMWGGKKRLYSATKFILYTAG 125 Query: 174 GSIFMLFAIVVMCWEKKTSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 GSIF+L ++ + + S + +P +++ +IAFF +FA+K P+ P HTW Sbjct: 126 GSIFLLMGVLGVAFYGSNESRFHFETSVNQSYPLALEIIFYIAFFMAFAVKSPILPLHTW 185 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP + + LAGI+LKMG YG IR + P A F+P + + I IIYA+ Sbjct: 186 LPXXXXXXHYSTCMLLAGILLKMGAYGLIRINMEFLPHAHSIFSPWLMIVGTIQIIYAAS 245 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 S+ Q ++KK IAYSS++HMG++ IGI S + G+ GA+ Q++SHG + +ALFF G Y Sbjct: 246 TSLGQRNLKKRIAYSSVSHMGFILIGIGSITERGLNGAILQIISHGFIGAALFFLAGTSY 305 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---- 407 DR+ + GG+ +P+ + F+MA++ LPG SGF E LV + + Sbjct: 306 DRIRLLYLDEMGGVAIPVPKIFTIFSSFSMASLALPGMSGFFAELLVFFGIITSQKYLLM 365 Query: 408 ---TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTV 463 + + + G++L+ +YSL + R++ +G + D RE + I + + Sbjct: 366 PKIAITFVMAIGILLTPIYSLSMLRQMFYGYKLFNTPNSYVFDFGPRELFVSISILIPVI 425 Query: 464 FFGIYPVPIRDTFSVPLSSIIENY 487 G+YP + + I+ NY Sbjct: 426 VIGLYPDFVLSLSVDKVEGILSNY 449 >gi|313156922|gb|EFR56360.1| proton-translocating NADH-quinone oxidoreductase, chain M [Alistipes sp. HGB5] Length = 494 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 145/416 (34%), Positives = 235/416 (56%), Gaps = 7/416 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L+ + +SW+ +Q +EY + F +L V G F+S+D+ Sbjct: 77 YAVGVDGISVAMLLLSAVIVFTGTFASWR-MQTQIKEYFLWFCLLSVGVFGFFISVDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSI 194 ++F+E +LIPM+++IGVWG + YAA K L GS +L I+ + + T +I Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSALLLIGILGIYFGAGATTMNI 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ + P + QY + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 LEIAQLHSIPLAQQYVWFPLVFVGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 255 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A+ + + L+ I+++Y +L + VQTD+K + AYSS++H G V Sbjct: 256 GGYGCFRVAMYLMPEAAHELSWIFIVLTTISVVYGALAACVQTDLKYINAYSSVSHCGLV 315 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I + GA+ QMLSHGL+++ F +G+IY R TRDI GL+ MP AV Sbjct: 316 LFAILMMNTTAGTGAILQMLSHGLMTALFFALIGMIYGRTRTRDIRELSGLMKVMPFLAV 375 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGF+ E + F N +T V ++A +V++A+Y L + K Sbjct: 376 GYVIAGLANLGLPGLSGFVAEMTIFNGAFMNDDTFHRVVTIIACTSIVITAVYILRVVGK 435 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 +++G E +L D + ER V + G+ P+ + D ++ II Sbjct: 436 IIYGTCTDEHHLKLTDATRDERLSVVCLVAAIAGMGLAPLWVSDMIRESVTGIIAQ 491 >gi|325996547|gb|ADZ51952.1| NADH-ubiquinone oxidoreductase chain M [Helicobacter pylori 2018] gi|325998136|gb|ADZ50344.1| NADH-ubiquinone oxidoreductase chain M [Helicobacter pylori 2017] Length = 512 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 167/457 (36%), Positives = 268/457 (58%), Gaps = 23/457 (5%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ-- 63 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSTLLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQTAGMQFE 63 Query: 64 -MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 M E + I +YH+GVDGI++ L++L + +L S ++E +++ I L+LE Sbjct: 64 EMKELAYQIG--VNYHVGVDGIALFLLLLNAIV----VLLSVIYVKERRKDFAICLLLLE 117 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +++G F SL+++ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I Sbjct: 118 GILMGVFSSLNVIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGI 177 Query: 183 VVMCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + + ++ + ++D Y ++ F I+ W+++AF A+KIP+FP HTWLP A+ Sbjct: 178 LYIGYDYANNYGMMSFDVLDWYQLN-FSSGIKTWLFVAFLIGIAVKIPLFPLHTWLPYAY 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q Sbjct: 237 SNAPTLGSVMLSALLSKMGTYALLRFLLPLFPELSEVYLTPIAIVALCMIIYGGFLAYTQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + Sbjct: 297 KDLKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGIIVMGLFLLAGILEERASS 356 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 +I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A Sbjct: 357 LEIARFGSIAKSAPVFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTS 416 Query: 417 VVLSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 ++LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 417 IILSAIYMLTSYKNVFFGNLKTGNNQISVFEDLNARE 453 >gi|116075447|ref|ZP_01472707.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. RS9916] gi|116067644|gb|EAU73398.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. RS9916] Length = 526 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 156/463 (33%), Positives = 258/463 (55%), Gaps = 12/463 (2%) Query: 36 VALGISTINFIFSLFVWSV-FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTT 93 +ALG+ I+F+ L +S FD SS Q++E W+ + +G DG+S+ LVVL+ Sbjct: 52 LALGVLAIDFVLMLVTFSQHFDAQDSSLQLVERLSWVPAIGLEWSVGADGLSMPLVVLSG 111 Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 +T + +SWK +Q + Y LV + FLS D LLF++ +E L+P++++I Sbjct: 112 LVTMLSVAASWK-VQHKAKLYFGLLLVQAAAQALVFLSQDFLLFFLAWELELVPVYLLIA 170 Query: 154 VWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF-SIQYWMW 212 +WGG R YAA KF LYT S+ +L + + + + ++ ++ P + + Sbjct: 171 IWGGQNRQYAATKFILYTALASLLILISGLALALAGDSFTLNLTELATRSPGGTFGLLCY 230 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 + F F +K+PMFP HTWLP+AH +A S+ LAG++LKMGGY +RF + + P A Sbjct: 231 LGFLVGFGVKLPMFPLHTWLPDAHGEANAPVSMLLAGVLLKMGGYALLRFNVQMLPDAHL 290 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 AP + L ++ IIY +L + Q ++K+ IA SS++HMG+V +GI + + GAM Q Sbjct: 291 VLAPALIVLGIVNIIYGALNAFGQDNVKRRIACSSVSHMGFVLVGIGAIDALSLSGAMLQ 350 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 M+SHGL+++A+FF G Y+R T I GGL +P + ++A++ LPG SGF Sbjct: 351 MISHGLIAAAMFFVTGSFYERTKTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGF 410 Query: 393 IGEFLVIMSVFQNSN-TVA------VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 I E + + V ++ T+ V A+ G+VL+ +Y L + R+V FG + + + Sbjct: 411 ISEITIFLGVTSQTDFTIGFRVITIVAAAIGLVLTPIYLLSMCRRVFFG-PRIPALAFVG 469 Query: 446 DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 D++ RE + + V T+ G++P D + ++ E + Sbjct: 470 DMNPRELVIGLTLLVPTLTIGVWPRVAMDVYEASTDALAETLS 512 >gi|170665232|gb|ACB29156.1| NADH dehydrogenase subunit D [Erigeron tenuis] Length = 500 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 160/496 (32%), Positives = 268/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+++ Y WI +F + LG+DG+SI V+LT F+T L++W I + R + L + Sbjct: 63 QLVDDYKWISFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWP-ITRDSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTLQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E ++ + + + + + Sbjct: 362 DEMGGVGIPMPKIFTMFSSFSMASLALPGMSGFVAEVIIFLGLITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK-DLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYLLSMSRQMFYGYKLFNTPNSFVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|168700373|ref|ZP_02732650.1| proton-translocating NADH-quinone oxidoreductase, chain M [Gemmata obscuriglobus UQM 2246] Length = 636 Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 150/437 (34%), Positives = 242/437 (55%), Gaps = 37/437 (8%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++LGVDG+++ LV L + + IL SW+S+Q + VL++ VIGAFLS D++ Sbjct: 120 QFYLGVDGLNLWLVALASVMLVPVILVSWESVQHRPGAFYGWLFVLQAGVIGAFLSFDVV 179 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 LFY+FFE +LIP F +IG WG S R AA KFFLYT GS+ L ++ + + Sbjct: 180 LFYVFFELTLIPSFFLIGNWGATSARRDAARKFFLYTLAGSLLTLVGVIGVVLTNPSEDG 239 Query: 195 IDLYAMSKF-------------------------PFSIQYWMWIAFFCSFAIKIPMFPFH 229 +++ K Q+W+++A F +K+P++PFH Sbjct: 240 TITFSIPKLMANVQEGMHAAHLKALAGDGSALAAKHQTQFWLFLALMAGFMVKVPIWPFH 299 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS-QYFAPVIFFLSLIAIIY 288 TWLP+A+ +APT ++ L+ +M K+G +G +R +LPL P A+ QY PVI + I+Y Sbjct: 300 TWLPSAYGEAPTGVTMLLSALMAKLGTFGILRLVLPLVPDAAIQYGLPVIGGFAAFGIVY 359 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 A+L + D+K +IAYSS++H+G++ +G+F+ + G+ G+ M++HGL + ALF +G Sbjct: 360 AALCAYASKDMKLVIAYSSVSHLGFLVLGLFAFNREGLAGSALHMVNHGLSTGALFASLG 419 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ---- 404 + DR T DI +GGL+ P +A++ +A++GLPG + F+ E +++ +F Sbjct: 420 FLMDRYRTTDIAKFGGLMGRYPNFAILFFALALASVGLPGLNNFVSEMMMLAGLFDARSP 479 Query: 405 --NSNTVAVLASFGVVLSALYSLWLYRKVVFG----VSKCEKVQQLKDLSLRERCMVYPI 458 S +AV+A+ G+ LSA Y + R V F + D+S RE + Sbjct: 480 GLKSLALAVVAATGIFLSAWYVFTMLRAVFFNPLKEPERAAPEAPAGDVSRREFFAFGSL 539 Query: 459 AVLTVFFGIYPVPIRDT 475 A L + G+ P P+ D Sbjct: 540 AALCLVLGLLPQPLLDA 556 >gi|307637943|gb|ADN80393.1| NADH-ubiquinone oxidoreductase chain M [Helicobacter pylori 908] Length = 512 Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 167/457 (36%), Positives = 268/457 (58%), Gaps = 23/457 (5%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ-- 63 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSTLLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQTAGMQFE 63 Query: 64 -MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 M E + I +YH+GVDGI++ L++L + +L S ++E +++ I L+LE Sbjct: 64 EMKELAYQIG--VNYHVGVDGIALFLLLLNAIV----VLLSVIYVKERRKDFAICLLLLE 117 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +++G F SL+++ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I Sbjct: 118 GILMGVFSSLNVIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGI 177 Query: 183 VVMCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + + ++ + ++D Y ++ F I+ W+++AF A+KIP+FP HTWLP A+ Sbjct: 178 LYIGYDYANNYGMMSFDVLDWYQLN-FSSGIKTWLFVAFLIGIAVKIPLFPLHTWLPYAY 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q Sbjct: 237 SNAPTLGSVMLSALLSKMGTYALLRFLLPLFPELSEVYLTPIAIVALCMIIYGGFLAYTQ 296 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + Sbjct: 297 KDLKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGIIVMGLFLLAGILEERASS 356 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 +I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A Sbjct: 357 LEIARFGSIAKSAPVFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTS 416 Query: 417 VVLSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 ++LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 417 IILSAIYMLTSYKNVFFGNLKTGNNQISVFEDLNARE 453 >gi|282877793|ref|ZP_06286606.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella buccalis ATCC 35310] gi|281300109|gb|EFA92465.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella buccalis ATCC 35310] Length = 494 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 145/421 (34%), Positives = 247/421 (58%), Gaps = 15/421 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 +Y +GVDGIS+++++L++ + +SW+ ++ +EY + F +L + V G F+S+D+ Sbjct: 76 AYTVGVDGISVVMLLLSSIIVFTGTFASWQ-LKPMTKEYFLWFTLLSTGVFGFFISIDLF 134 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + YAA K L GS ++ I+ + + T + Sbjct: 135 TMFMFYEVALIPMYLLIGVWGSGPKEYAAMKLTLMLMGGSALLIIGILGIYFYSGATTMN 194 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++++ A+ P +Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 195 VLEIAALHNIPVDVQKIFFPLIFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 254 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A+Q A + L+ I+++Y +L + VQTD+K + AYSS++H G Sbjct: 255 LGGYGCFRIAMFLLPEAAQELAWIFLILTTISVVYGALSACVQTDLKYINAYSSVSHCGL 314 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + K+ GA+ QMLSHGL+++ F +G+IY R HTRD+ GGL+ MP Sbjct: 315 VLFALLMMTKTACTGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRQLGGLMKIMPFLG 374 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V +V +AN+GLPG SGF+ E + + F N++ T ++A +V++A+Y L + Sbjct: 375 VGYVVAGLANLGLPGFSGFVAEMTIFVGSFANNDTFHRTATIIACTSIVVTAVYILRVVG 434 Query: 430 KVVFGVSKCEKVQQLKDLSLRER----CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 K+++ +QL D + ER C+++ +A L GI P+ + + + I+ Sbjct: 435 KILYQKVANPHFEQLTDATWDERVAVMCLIFCVAGL----GIAPLWASNVINDAVGPILL 490 Query: 486 N 486 N Sbjct: 491 N 491 >gi|27885337|gb|AAO26149.1| NADH dehydrogenase subunit 4 [Psilostrophe gnaphalodes] Length = 417 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 231/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y I++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKRINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + D +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSDEPTLNFDTSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +AL F G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALLFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|317178434|dbj|BAJ56222.1| NADH dehydrogenase subunit M [Helicobacter pylori F30] Length = 512 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 164/455 (36%), Positives = 264/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E I +YH+GVDGI++ L++L + C++ ++E+ +++ I L+LE + Sbjct: 64 EMKELIYQIGVNYHVGVDGIALFLLLLNAIVVLLCVIY----VKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG + + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFSRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANNYGMMSFDILDWYQLN-FSSEVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ + + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLAGILEEHTSSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKAGNNQISVFEDLNARE 453 >gi|290486885|gb|ADD29827.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Oxalis latifolia] Length = 498 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 151/436 (34%), Positives = 248/436 (56%), Gaps = 12/436 (2%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI++F Y LG+DG+SI ++LT F+T L++W + N+R + LV+ Sbjct: 63 QLTENYKWINFFDFYWKLGIDGLSIGPILLTGFITTLATLAAWP-VTRNYRLFHFLMLVM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLMG 181 Query: 182 IVVMCWEKKTSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + S + ++ A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 182 VFGLGLYGSNESTLNFEISANQSYPTALEILFYIGFLIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L A F+P + + + IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLSHAHSIFSPWLMIVGTMQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ +GI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA------ 413 GG+ +P+ + + +MA++ LPG SGF EF+V + + + + Sbjct: 362 DEMGGMAIKIPKIFTMFSILSMASLALPGMSGFFAEFIVFFGIITSQKYLLMFKIIIIFG 421 Query: 414 -SFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 422 MAIGMILTPIYSLSMLRQLFYGYKLFNVPSSYFFDSGPRELFISIAILLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + +II N+ Sbjct: 482 VFSLSVDKVEAIISNF 497 >gi|330997238|ref|ZP_08321091.1| proton-translocating NADH-quinone oxidoreductase, chain M [Paraprevotella xylaniphila YIT 11841] gi|329571033|gb|EGG52740.1| proton-translocating NADH-quinone oxidoreductase, chain M [Paraprevotella xylaniphila YIT 11841] Length = 500 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 141/419 (33%), Positives = 242/419 (57%), Gaps = 7/419 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+++++L+ + +SWK ++ +EY + + +L + V G F+S D+ Sbjct: 82 YSVGVDGISVVMLLLSAIIVFTGTFASWK-LKPLTKEYFLWYTLLSTGVFGFFISTDLFT 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSI 194 ++F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + +T ++ Sbjct: 141 MFMFYEVALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIYYGAGAQTMNV 200 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ + P +Q + A F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 201 LEIAGLHNIPEGMQRLFFPAVFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 260 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P + L+ ++++Y + ++VQTD+K + AYSS++H G V Sbjct: 261 GGYGCFRVAMYLMPEGLAQWGDFFLILTTVSVVYGAFSAVVQTDLKYINAYSSVSHCGLV 320 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP AV Sbjct: 321 LFALLMATRTSCTGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRELNGLMKVMPFLAV 380 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGF+ E V + F++ + V+A+ +V++A+Y L + K Sbjct: 381 GYVIAGLANLGLPGLSGFVAEMTVFVGSFEHPDVFHRACTVIATVSIVVTAVYILRVVGK 440 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTL 489 +++G + +L D + ER V + V G+ P + DT S + I+ ++ L Sbjct: 441 ILYGTCRNPGHLKLTDATWDERFAVICLIVCVAGLGLAPWWVSDTVSFSVEPIVSHFNL 499 >gi|293373607|ref|ZP_06619955.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides ovatus SD CMC 3f] gi|298480344|ref|ZP_06998542.1| NADH dehydrogenase I, M subunit [Bacteroides sp. D22] gi|292631432|gb|EFF50062.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides ovatus SD CMC 3f] gi|298273625|gb|EFI15188.1| NADH dehydrogenase I, M subunit [Bacteroides sp. D22] Length = 494 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 159/479 (33%), Positives = 265/479 (55%), Gaps = 17/479 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 + FLSI +P L +L + G ++ GV + ++ I S+ + ++ RS+ Sbjct: 1 MNFLSIFVLIPLL----MLAGLWAARGIKAIRGVMVTGASALLIASVVLTFLYLGERSAG 56 Query: 63 QMIEYYHWIDYF------CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 E D SY +GVDGIS+ +++L+ + +SW+ +Q +EY + Sbjct: 57 NTAEMLFRADTLWYAPLHISYSVGVDGISVAMLLLSAVIVFTGTFASWR-LQPLTKEYFL 115 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 F +L V G F+S+D+ ++F+E +LIPM+++IGVWG + YAA K L GS Sbjct: 116 WFTLLSMGVFGFFISVDLFTMFMFYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSA 175 Query: 177 FMLFAIVVMCWEK--KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L I+ + + T +++++ + PF+ Q + F F + +FPFHTW P+ Sbjct: 176 FLLIGILGIYFGSGATTMNLLEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPD 235 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 H APTA S+ AG+++K+GGYGC R + L P A+ + + L+ I+++Y + + Sbjct: 236 GHASAPTAVSMLHAGVLMKLGGYGCFRIAMYLMPEAANELSWIFLILTGISVVYGAFSAC 295 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 VQTD+K + AYSS++H G V I ++ GA+ QMLSHGL+++ F +G+IY R Sbjct: 296 VQTDLKYINAYSSVSHCGLVLFAILMLNQTAATGAILQMLSHGLMTALFFALIGMIYGRT 355 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVA 410 HTRD+ GL+ MP +V ++ +AN+GLPG SGFI E + + FQN++ T+ Sbjct: 356 HTRDVRELAGLMKIMPFLSVCYVIAGLANLGLPGLSGFIAEMTIFVGSFQNNDVFHRTLT 415 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++A +V++A+Y L L K+++G + +L D + ER V + V G+ P Sbjct: 416 IIACSSIVITAVYILRLVGKILYGTCTNKHHLELTDATWDERVAVICLIVCVAGLGMAP 474 >gi|311033310|ref|ZP_07711400.1| NADH dehydrogenase subunit M [Bacillus sp. m3-13] Length = 512 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 165/508 (32%), Positives = 281/508 (55%), Gaps = 35/508 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTI-NFIFSLFVWSVFDKGR 59 MN FL+ + F P LG+ V+L + G ++T+ + I ++ + + G Sbjct: 1 MNSIFLTALIFAPLLGILVLLITPKTNVEAIKIVGF---LATLPSLILAVIAFWQYKAGA 57 Query: 60 SSFQMIEYYHWIDYF----------------CSYHLGVDGISILLVVLTTFLTPFCILSS 103 Q + WI + S+ LG++G S+++++LT L+ ++S Sbjct: 58 GLEQFAVKHEWITFGNKGLTKDIYGFQVYQPISFELGINGFSLVMILLTAVLSTLAAIAS 117 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYA 163 +++ ++ Y I FL+L+ ++G F + ++LLF+ FFE +LIPMF +IG WG E+ A Sbjct: 118 IH-VKKEWKGYFILFLLLQIGMLGVFAAENLLLFFFFFELTLIPMFFLIGKWGYFEKESA 176 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM----------SKFPFSIQYWMWI 213 AY+F +Y GS +L VV+ + T +I ++ AM + ++ + I Sbjct: 177 AYRFLIYNGLGSAILLIVFVVLFTKTGTMNIAEITAMFTGNSDAMFLGEVSDDLRMGLLI 236 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 A +F IK+P+ P H+W+ HVQAP + + AG++LK+G +G IRF + +FP Sbjct: 237 ALLVAFGIKLPIVPLHSWMLKVHVQAPPSIVMLHAGVLLKIGAFGLIRFGVGIFPEQFDQ 296 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 A ++ L ++ ++Y + ++++QTD K ++AYSSI+HMG V IG+ + ++G++GA+FQ+ Sbjct: 297 LAFILAILGVMNLLYGAFLALIQTDFKMVLAYSSISHMGIVLIGLAALNEAGIQGAIFQV 356 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +SHG +++ LFF +GV+Y+R T DI GGL MP A +V MA++GLPG SGF+ Sbjct: 357 VSHGFIAALLFFLIGVMYERTGTTDIGKLGGLAKAMPLTAGFFLVGAMASLGLPGMSGFV 416 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFL M +F VA + + G++L+A Y L + FG +++ DL E Sbjct: 417 SEFLAFMGLFNEMPVVAAVGTLGIILTAAYLLRAVLGMTFGTKAAGYSEKVVDLRGIEYI 476 Query: 454 MVYPIAVLTVFFGIYP----VPIRDTFS 477 V+ + V G+YP P++DT + Sbjct: 477 PVFAMLFFIVLIGVYPSILAQPLQDTIN 504 >gi|163847538|ref|YP_001635582.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroflexus aurantiacus J-10-fl] gi|222525388|ref|YP_002569859.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroflexus sp. Y-400-fl] gi|163668827|gb|ABY35193.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroflexus aurantiacus J-10-fl] gi|222449267|gb|ACM53533.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroflexus sp. Y-400-fl] Length = 554 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 176/527 (33%), Positives = 284/527 (53%), Gaps = 61/527 (11%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD----- 56 +P+L+++ P G+ +I + L ++ L + + + + VW+ FD Sbjct: 13 GIPWLTLLVLAPLAGIALIGLAWLLKFNEQTVKAGVLAWTGVPLLLAGMVWARFDPLAVA 72 Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 G+ + Q++E WI Y LGVDG+S+ LV+LT +TP +++SW ++E ++ Sbjct: 73 SGQGAVQLVERVPWIQAIRVDYFLGVDGLSLPLVILTAVMTPLAVIASW-GVRERLHAHL 131 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L+LE+ ++G F++LD F+IF+E SL+P F +I WG +R YAA+KFF+YT GS Sbjct: 132 ALLLLLEAAMLGYFVALDFFFFFIFWEFSLVPAFFLIQGWGREQRRYAAFKFFVYTMAGS 191 Query: 176 IFML--FAIVVMCWEKKTSSIIDL---------------------------------YAM 200 + ML F ++ + + DL A+ Sbjct: 192 LGMLLLFQVIYLAMRQVGMPTFDLIALGRLGQGLPVAGVEGTLRDILFAYLEQIGVTNAL 251 Query: 201 SKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 ++P SI W A F +FAIK+ ++PFHTWLP+A+ + PTA S+ L+ +M KMG Y Sbjct: 252 GRYPLLYSSIAMW---AIFIAFAIKLAVWPFHTWLPDAYAEGPTAASILLSAVMSKMGAY 308 Query: 258 GCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA--SLVSMVQTDIKKLIAYSSIAHMGYVT 315 G +R LLP P A+QYFAPV+ L+++ ++ + V DIK+LI Y+SI HMGYV Sbjct: 309 GMLRLLLPFTPDAAQYFAPVLAALAVVGVVAGAFGALGQVNGDIKRLIGYTSINHMGYVM 368 Query: 316 IGIFSGM----------KSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 + I S + GA+ QM++HGL + ALF+ GV+Y+R ++ GGL Sbjct: 369 LAIAGAAAAGEAGIDARASAINGALVQMVAHGLSTGALFYLAGVLYERTGRWELSGLGGL 428 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 + P +A VM + AN+GLPG +GF+GEF + + LA G+V++AL L Sbjct: 429 RASAPTFAGVMGIALFANLGLPGLAGFVGEFFIFRGAWATLPFFTALAVIGLVVTALALL 488 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +++++ G + + + DL +E + PI VL++ G+YP P+ Sbjct: 489 LMFQRIFLGPATGTP-RSIPDLRPQEFWAIVPILVLSLLIGVYPGPL 534 >gi|170665270|gb|ACB29175.1| NADH dehydrogenase subunit D [Leucheria thermarum] Length = 500 Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 153/442 (34%), Positives = 253/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +ILF + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLILFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ ++I FF +FA+K P+ P HTWL Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIIYIGFFIAFAVKSPILPLHTWLXXXXXXX 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLIIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + V+ Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITVV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMLRQMFYG 443 >gi|153012159|ref|YP_001381674.1| NADH-plastoquinone oxidoreductase subunit 4 [Medicago truncatula] Length = 498 Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 160/482 (33%), Positives = 264/482 (54%), Gaps = 23/482 (4%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+IV P G + LF G + ++ I I+ + + + + F Sbjct: 6 PWLTIVVVFPIAAGSLIFLFPHR---GNKVIRWYSISICLIDLLLTTYAFCYHFQLDDPL 62 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++F Y LG+DG+SI ++LT F+T L++ Q REY + + + Sbjct: 63 IQLTENYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAA----QPVTREYQLFYFL 118 Query: 121 LESM---VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 + +M IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F Sbjct: 119 MLAMYSGQIGPFSSRDILLFFIMWELELIPVYILLAMWGGKKRLYSATKFILYTAGGSVF 178 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L I+ + ++ ++ +P +++ ++ AF +FA+K P+ P HTWLP+ Sbjct: 179 LLMGILGIGLYGSNEPTLNFETLTNQSYPVALEIILYTAFLIAFAVKSPIIPLHTWLPDT 238 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + + LAGI+LKMG YG +R + LF A F P + L I IIYA+ S Sbjct: 239 HGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASTSFG 298 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++KK IAYSS++HMG++ +GI S +G+ GA+ Q++SHG + +ALFF G YDRL Sbjct: 299 QRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLR 358 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 + GG+ MP+ + + +MA++ LPG SGF+ E +V + + Sbjct: 359 LLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLFMMKIL 418 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGI 467 + + + G++L+ +Y L + R++ +G D RE + I + + GI Sbjct: 419 ITFVTAIGMILTPIYLLSILRQMFYGYKFFNTPNSYFFDSGPRELFISISILIPVIGIGI 478 Query: 468 YP 469 YP Sbjct: 479 YP 480 >gi|124025361|ref|YP_001014477.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. NATL1A] gi|123960429|gb|ABM75212.1| putative NADH Dehydrogenase (complex I) subunit (chain 4) [Prochlorococcus marinus str. NATL1A] Length = 524 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 164/499 (32%), Positives = 277/499 (55%), Gaps = 23/499 (4%) Query: 4 PFLSIVTFLPFLGVFVILF-----SSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDK 57 P+LS++ LP +G ++ F S R +AL I +F+ + + ++FD Sbjct: 23 PWLSLIVLLPIVGALIMPFLPTQESKNFNLPRN----IALVILLADFLIVVLAFANLFDP 78 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 S Q++E W+ + LGVDGIS LVVL+ +T +SWK +++ R Y Sbjct: 79 NSESLQLVERLQWLPSIGLEWSLGVDGISAPLVVLSGLITFLSAAASWK-VKQKTRLYFA 137 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+ S FLS D LLF++ +E L+P++++I +WGG ++YAA KF LYT S+ Sbjct: 138 LLLIQASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGKRKLYAATKFILYTALASL 197 Query: 177 FMLFA--IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 +L + + + ++ T ++ ++ A S F + + ++ F F +K+P+FP HTWLP+ Sbjct: 198 LILISGLALALSGDQFTFNLSEIAAKS-FTGNFGIFCYLGFLIGFGVKLPIFPLHTWLPD 256 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH +A S+ LAG++LKMGGY IRF + + P AP + + ++ IIY +L + Sbjct: 257 AHGEANAPVSMLLAGVLLKMGGYALIRFNVQILPDTHLILAPALIIIGIVNIIYGALNAF 316 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+R Sbjct: 317 AQDNVKRRIACSSVSHMGFVLVGIGAVNALGISGAMLQMISHGLIAAAMFFVTGSFYERT 376 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA---- 410 +T I GGL +P + ++A++ LPG SGFI E V + + + Sbjct: 377 NTLSIPNMGGLAKALPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEGFTSLFRA 436 Query: 411 ---VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 +LA+ G+VL+ +Y L + R+V FG + + +K++ RE + + V T+ G Sbjct: 437 ITILLAAIGLVLTPIYLLSMCRRVFFG-PRIPALSIVKEMDARELSIGLSLLVPTLVIGF 495 Query: 468 YPVPIRDTFSVPLSSIIEN 486 +P D + V +++ ++ Sbjct: 496 WPRIAIDLYEVSTNALAQS 514 >gi|256427274|ref|YP_003127039.1| Nad4p [Brettanomyces custersianus] gi|255761585|gb|ACU32822.1| Nad4p [Brettanomyces custersianus] Length = 482 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 151/397 (38%), Positives = 228/397 (57%), Gaps = 5/397 (1%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 G DGI ++ ++LT +L I+S+W++I YMI + L ++ F+ LD++ FYI Sbjct: 74 GYDGIGLVFIILTIYLGIISIISNWENIVSKKETYMILLMSLIILMGLNFICLDLISFYI 133 Query: 140 FFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA 199 FE++LIP++++IG++GGS + AAY +YT S+FML AIV++ + + + Sbjct: 134 LFESTLIPLYLMIGIYGGSNKNKAAYYVLIYTLCSSLFMLLAIVMIYVLYNNVDFVTINS 193 Query: 200 MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 +Q + I +K P+ P HTWLP H ++P GS+ LAGI+LK+ YG Sbjct: 194 -KIISMELQSVLLIGLMIGLGVKTPLVPIHTWLPTVHSESPLGGSILLAGIILKLAIYGI 252 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 IR LL S +AP+++ + +I IIY+SLV++ QTD+K +IAYSSI+H+G +GIF Sbjct: 253 IRILLSNISEISLLYAPILYVIGIITIIYSSLVTLSQTDLKVIIAYSSISHLGVCILGIF 312 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 S G+ G++ L+HG VS ALF + GV+YDR H R +F Y GL MP +AV ++ Sbjct: 313 SNNLLGIVGSLILCLAHGFVSPALFILMGGVLYDRYHNRVLFYYQGLTQFMPIFAVYLVF 372 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV-SK 437 F+ N G P + F+GEFL I + + V+LSA Y L K+ G SK Sbjct: 373 FSFCNTGTPLSYNFVGEFLCISGAIIKHPIIGAFTAASVILSACYQFKLTNKLTSGAFSK 432 Query: 438 CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 V DL RE ++ +A+ T+ GI P I + Sbjct: 433 YLHVTY--DLLYREHFILLFLAIPTLILGIAPNVISN 467 >gi|210135431|ref|YP_002301870.1| NADH dehydrogenase subunit M [Helicobacter pylori P12] gi|210133399|gb|ACJ08390.1| NADH-ubiquinone oxidoreductase chain M [Helicobacter pylori P12] Length = 512 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 169/455 (37%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLILLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E I +YH+GVDGI++ L++L + +L S ++E +++ I L+LE + Sbjct: 64 EMKELIYQIGVNYHVGVDGIALFLLLLNAIV----VLLSVIYVKERRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I+D Y ++ F I+ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGYYYASNYGMMSFDILDWYQLN-FSSEIKTWLFVAFLVGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS GV GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGVSGAVFMMFAHGIIVMGLFLLAGILEERTSSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPVFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAVYMLTSYKDVFFGNLKAGNNQISVFEDLNARE 453 >gi|326200329|gb|ADZ52368.1| NADH dehydrogenase subunit 4 [Asclepias syriaca] Length = 500 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 152/441 (34%), Positives = 248/441 (56%), Gaps = 12/441 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVLPISAGSLIFFLPHRGNKVVRWYTICICILELLLTVYTFCYH-FQPDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI F + LG+DG+SI ++LT F+T LS+W +++ R + L + Sbjct: 64 LLEDYKWIRLFDFHWRLGIDGLSIGPILLTGFITTLATLSAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S ++LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF L + Sbjct: 123 SGQIGLFSSRNLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFFLMGV 182 Query: 183 --VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + + + A +P ++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGIGLYGSNQPTLSFETSANQSYPLGLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG R + L A F+P + + I IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLARINIELLSHAHYLFSPWLVIVGAIQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR + Sbjct: 303 KRIAYSSVSHMGFLIIGIGSITDTGLNGALLQIISHGFIGAALFFLAGTTYDRTRLLYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F MA++ LPG SGF+ E +V + + N + + Sbjct: 363 EMGGIAITMPKIFTMFSSFAMASLALPGMSGFVAELIVFFGIITSHNFFLMPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 423 AIGIILTPIYSLSMSRQMFYG 443 >gi|110667605|ref|YP_657416.1| NADH dehydrogenase, subunit M (ubiquinone) [Haloquadratum walsbyi DSM 16790] gi|109625352|emb|CAJ51775.1| NADH dehydrogenase, subunit M (ubiquinone) [Haloquadratum walsbyi DSM 16790] Length = 508 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 159/456 (34%), Positives = 253/456 (55%), Gaps = 27/456 (5%) Query: 41 STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF--------CSYHLGVDGISILLVVLT 92 S I + SL++W+ +D ++ + D + +GVDGIS+ LVVLT Sbjct: 33 SAIPILGSLWMWAQYDATGNALLGGSIAYETDVIWLTLGGLELHWFVGVDGISLPLVVLT 92 Query: 93 TFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 T LT I+S+W I E ++ L +E+ ++G F +LD +++IF+EA L+PM+ +I Sbjct: 93 TILTMLAIVSAWTPIDERQSQFYGLMLFMEANLLGVFTALDFFVWFIFWEAVLVPMYFLI 152 Query: 153 GVWGGSERIYAAYKFFLYT-------FFGSIFMLFAIVVMCWEKKTSSIID-LYAMSKFP 204 GVWGG R YAA KFF+YT F G I ++F + + I L A S Sbjct: 153 GVWGGPNRRYAAIKFFVYTNIASLAMFIGFIALVFGLGSSVSSMRLPEITQALRAGSLTA 212 Query: 205 F------SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 F +++ +IA F FA+K+P+ P HTWLP+AHV+APT SV LAG++LKMG Y Sbjct: 213 FGGIDAATLKLVAFIAMFVGFAVKVPVAPLHTWLPDAHVEAPTPVSVMLAGVLLKMGTYA 272 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +R+ + P + I +++I++IY +L+++ Q D+K++IAYSS++ MGYV +G+ Sbjct: 273 LLRYNFTMMPDVAIDLVIPIASIAVISVIYGALLALAQQDLKRIIAYSSVSSMGYVILGL 332 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 + GV GA FQM++HGL+S +F VGVIY+ HTR + G+ MP A + + Sbjct: 333 IAYTTYGVGGATFQMVAHGLISGLMFMSVGVIYNITHTRMVGDMSGIADRMPVTAGIFIA 392 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV-----LASFGVVLSALYSLWLYRKVVF 433 MGLP +GF GEF + F ++ A+ A FG+V+ A Y L+ ++ +F Sbjct: 393 GAFGYMGLPLMAGFAGEFFIFKGAFASTVHTAMPLFTAAAMFGIVIVAGYLLFAMQRTLF 452 Query: 434 GVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G + ++ ++ + + + L + G+ P Sbjct: 453 GPFSFDGEYEITTAAMHDIAPLAVLLALVIALGVAP 488 >gi|226315021|ref|YP_002774917.1| NADH dehydrogenase subunit M [Brevibacillus brevis NBRC 100599] gi|226097971|dbj|BAH46413.1| NADH-quinone oxidoreductase chain M [Brevibacillus brevis NBRC 100599] Length = 510 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 176/509 (34%), Positives = 284/509 (55%), Gaps = 32/509 (6%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS + F P L + V+ F G G+ + + I + +++ +F+ ++ Q Sbjct: 5 LLSSLVFSPLLAIIVMAFIPNRHAGVIKQVGIYGTLPAL--ILAGWMFGMFNYETANLQF 62 Query: 65 IEYYHWID-------------YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 +E + WI + +Y LG+DGIS+ L++LT + ++SW+ I++ Sbjct: 63 VEKHSWISIPIGMAQAGTVFAFEINYELGIDGISMPLILLTAIIGTLAAIASWQ-IKKRQ 121 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 +EY I F +L ++G F + ++ LF+IFFE +L+PM+ +IG+WG ER AA KF LY Sbjct: 122 KEYFILFHLLLIGMLGVFAADNLFLFFIFFELTLVPMYFLIGIWGYGEREQAANKFLLYN 181 Query: 172 FFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF---------SIQYWMWIAFFCSFAIK 222 GS ML A +V+ +T +I ++ A+ P +++ +++ F +FAIK Sbjct: 182 GIGSGIMLLAFIVIFVIMRTLNIDEITAILTTPGHPITEILTPEMRFGIFLVLFIAFAIK 241 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +P+FPFHTW+ HVQAP + + +GI+LKMG YG +R + FP + F+ I L Sbjct: 242 LPVFPFHTWMLRVHVQAPPSIVMIHSGILLKMGAYGLLRMGIGFFPEQAYDFSMWIAVLG 301 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 +I I+Y ++++ VQ D+K ++AYSSI+HMG V +G S G +GAMFQ++SHG +S+ Sbjct: 302 IINILYGAVLAFVQKDLKMVLAYSSISHMGIVLLGFASMNTIGFQGAMFQVVSHGFISAL 361 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LFF +GVI+DR T + GGL +MP + V++ MA++GLPG SGFI EF + + Sbjct: 362 LFFLIGVIWDRTQTSMLDDLGGLAKSMPFVSGVLLAGGMASLGLPGMSGFISEFFAFLGL 421 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL- 461 F +A + + G+VL+A+Y L K FG + + L D E V P+ VL Sbjct: 422 FGRLPVMAAVGAIGIVLTAVYLLRAILKTTFGPTPG-RCTGLADAQPME---VIPMVVLL 477 Query: 462 --TVFFGIYPVPIRDTFSVPLSSIIENYT 488 + G+YP + + L +I+ T Sbjct: 478 GCIILIGVYPAVLGNPMQQALKTIVPIVT 506 >gi|290486865|gb|ADD29817.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Nerium oleander] Length = 500 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 152/441 (34%), Positives = 250/441 (56%), Gaps = 12/441 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVILPISVGSLIFFLPHRGNRVVQWYTICICILELLLTVYTFCYH-FQLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI +F + LG+DG+SI ++LT F+T LS+W +++ R + L + Sbjct: 64 LLEDYKWIRFFDFHWRLGIDGLSIGPILLTGFITTLATLSAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ A +P ++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGIGLYGSNEPTLNFETSANQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG R + L A F+P + + I IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLARINIELLSHAHYLFSPWLVIVGTIQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR + Sbjct: 303 KRIAYSSVSHMGFLIIGIGSITDTGLNGALLQIISHGFIGAALFFLAGTTYDRTRLLYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGIAITMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIISSHKYFLMPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 423 AIGMILTPIYSLSMSRQMFYG 443 >gi|313895939|ref|ZP_07829493.1| proton-translocating NADH-quinone oxidoreductase, chain M [Selenomonas sp. oral taxon 137 str. F0430] gi|312975364|gb|EFR40825.1| proton-translocating NADH-quinone oxidoreductase, chain M [Selenomonas sp. oral taxon 137 str. F0430] Length = 510 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 163/500 (32%), Positives = 273/500 (54%), Gaps = 23/500 (4%) Query: 3 LPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 +P LSI+ +LP + +I L L R A+ + + L V++ +D R Sbjct: 4 VPVLSIILWLPLVAACIIALLPGGLHSAIRRLSAAAM---VLTLLLILHVYANYDLMRGG 60 Query: 62 FQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q EY WI D +Y LGVDGIS+ +++LT + + SSW +++ +EY + L+ Sbjct: 61 MQFTEYVPWITDLGVAYALGVDGISLPMLLLTGVVGLAAVFSSWH-VEKRVKEYFVLLLI 119 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI---YAAYKFFLYTFFGSIF 177 + V GAFL DM LF + E ++P ++++ +WG SER+ +AA K ++ GS F Sbjct: 120 VIGGVTGAFLVRDMFLFLVLCEMVVVPAYLMVLIWGSSERVSKEHAAMKMTIFLLVGSAF 179 Query: 178 MLFAIVVM---CWEKKTSSIIDLYAMSK------FPFSIQYWMWIAFFCSFAIKIPMFPF 228 ML ++++ +E + D A++ P+ +Q ++ F + MFPF Sbjct: 180 MLLGVLLLYVSAYETGMRTF-DFEALAMAATSGLIPWEVQVTAFLLLLVGFGSHLSMFPF 238 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H W P+ + APTA S+ AG++ K+GGY IR + + PL ++++APVI L++I +IY Sbjct: 239 HIWSPDGYAGAPTAISMINAGVLKKIGGYALIRIGIFILPLGAKFWAPVIAVLAMINVIY 298 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 AS +++ Q DIK +IAYSS++HMGYV +G + V GA+ M++HG++ + F +G Sbjct: 299 ASYIALAQRDIKYMIAYSSVSHMGYVLLGFAALNAVSVSGAVAYMVAHGIMLALFFSQIG 358 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 IYD+ R I GL H+ P V M+ + ++GLPG GFI EF + + V + Sbjct: 359 YIYDKTDLRSIGDLWGLAHHRPHITVGFMLAGLCSLGLPGLIGFIPEFTIFVGVMEVYPV 418 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 +AV++ G+V +A Y L + +V+FG + E+ + D + ++ + V V G++ Sbjct: 419 IAVISVSGIVFTAFYVLRMLARVLFG-PRTERFTAIPDTQKIDLAPLFVLGVFLVGLGVF 477 Query: 469 P---VPIRDTFSVPLSSIIE 485 P + + D+ PL + E Sbjct: 478 PGLLMNVVDSGVAPLVPLFE 497 >gi|296936721|gb|ADH94393.1| NADH-plastoquinone oxidoreductase subunit 4 [Syzygium cumini] Length = 501 Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 167/501 (33%), Positives = 279/501 (55%), Gaps = 25/501 (4%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV-----ALGISTINFIFSLFVWSVFDKG 58 P+L+I+ LP +I F + G ++ + L ++T F + F Sbjct: 6 PWLTIIVLLPIFAGSLIFFLPHRGNKVIRWYTICICYLELLLTTYTFCYH------FQLN 59 Query: 59 RSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 Q+ E Y WI++F Y LG+DG+SI ++LT F+T L++ + + + R + Sbjct: 60 DPLTQLTEDYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLFHFL 118 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF Sbjct: 119 MLAMYSGQIGSFSSRDLLLFFIMWELELIPIYLLLLMWGGKKRLYSATKFILYTAGGSIF 178 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L ++ + I++L +S +P +++ ++I FF +FA+K+P+ P HTWLP+ Sbjct: 179 LLIGVLGIGLYGSNEPILNLETLSNQSYPVALEIILYIGFFIAFAVKLPIIPLHTWLPDT 238 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+L S Sbjct: 239 HGEAHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLIIVGAIQIIYAALTSPG 298 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 299 QRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIR 358 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + Sbjct: 359 LVYLDEMGGMAIHLPKIFTMFSILSMASLALPGMSGFLAELIVFFGIINSQKYLLMPKIL 418 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFG 466 + + + G++L+ +Y L + R++ +G K V D RE + I + + G Sbjct: 419 ITFVMAIGMILTPIYLLSMLRQMFYGY-KLFNVPNSYFFDSGPRELFVSISILLPIIAIG 477 Query: 467 IYPVPIRDTFSVPLSSIIENY 487 IYP + + +II NY Sbjct: 478 IYPDFVLSLSVDKVEAIISNY 498 >gi|296274188|ref|YP_003656819.1| proton-translocating NADH-quinone oxidoreductase subunit M [Arcobacter nitrofigilis DSM 7299] gi|296098362|gb|ADG94312.1| proton-translocating NADH-quinone oxidoreductase, chain M [Arcobacter nitrofigilis DSM 7299] Length = 493 Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 148/502 (29%), Positives = 274/502 (54%), Gaps = 22/502 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ LS + FLP + F ++ ++ + +A +T+ L ++ FD + Sbjct: 1 MSAESLSFIIFLPAIVAFGLMITT---ANVEAVRNIAFLTTTVILALVLKIYINFDP-NA 56 Query: 61 SFQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q + WI Y +Y++GVDG S+ +++L L P L W+ + Y I L Sbjct: 57 GMQFVTNAPWIQTYGINYYIGVDGFSLTILMLIAILIPTSYLLLWEG---RTKGYWINML 113 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++++ V GA LSLD++LFY F+E L+P+F++IG+ G ++++ K +YT GS+ M Sbjct: 114 LVQTGVTGALLSLDVILFYFFWEVMLLPVFLMIGIDGFGDKVFTTIKVTIYTMAGSLLMF 173 Query: 180 FAIVVMC---------WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 I+ + W + + D ++ + Q ++++ F +F IKIP+FP HT Sbjct: 174 IGIIYLGVTFYNEFGFWSFQYN---DFTKITTLSYHEQVYLFLTFVIAFGIKIPIFPLHT 230 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 W+ + + APT L+ IM K+G Y +RF++P+FP ++ F+ L ++Y Sbjct: 231 WIMDTYKNAPTGAVFLLSSIMAKLGVYAIVRFMIPIFPEIYIEYSTWFVFIGLFGLVYFG 290 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + +++Q DIK++ AYSS +H+ ++ GIFS G+ GA++ +++H + + ALF VGV+ Sbjct: 291 IAALMQNDIKRMFAYSSASHLSFIAAGIFSLNAYGINGALYLIIAHAIATGALFLLVGVL 350 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 +D + I GG+ P + + + AN+GLPGT+GF+ E L+I +++ ++T+ Sbjct: 351 HDESKFKTISDLGGIAKVAPIFTFIFAIMLFANIGLPGTNGFVSELLIIFGIYEFNHTLG 410 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 +++ V++ A Y LW++++ + + + ++++DL ++E + P +L G+YP Sbjct: 411 YISALTVIIGASYMLWMFQRAILQ-DRVGEPRKMRDLKIKEIIGLAPWIILVFLMGVYPE 469 Query: 471 PIRDTFSVPLSSIIENYTLKTG 492 P D F P + N LK G Sbjct: 470 PFIDKFE-PTVTHFLNDILKIG 490 >gi|319950463|ref|ZP_08024377.1| NADH:ubiquinone oxidoreductase subunit M [Dietzia cinnamea P4] gi|319435886|gb|EFV91092.1| NADH:ubiquinone oxidoreductase subunit M [Dietzia cinnamea P4] Length = 524 Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 162/495 (32%), Positives = 266/495 (53%), Gaps = 39/495 (7%) Query: 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISI 86 RR+ +AL S + ++ + F+ G + Q +E WI F +Y LG+DG+++ Sbjct: 27 SARRAARPLALATSLVVLAVAVVLAVRFEPGGAVHQFVESRPWIPAFGATYTLGLDGVAL 86 Query: 87 LLVVLTTFLTPFCILSSWKSIQ-------------ENFREYMIAFLVLESMVIGAFLSLD 133 +LV+LT L P +L+ W+ + Y L + + + AF SLD Sbjct: 87 VLVLLTAGLMPLLLLAGWRDTDGSDGADAASAAPGRRGQAYPALLLATQGLALVAFTSLD 146 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-----SERIYAAYKFFLYTFFGSIFMLFAIVVM--- 185 +LLFY+ FEA L+P++ +IG +GG ++R AA +F LY G + ML A++ + Sbjct: 147 VLLFYVAFEAMLVPLYFLIGGFGGADSGGTDRARAAVRFLLYNLAGGLVMLAAVITLYIY 206 Query: 186 ------------CWEKK--TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 ++ + T ++ D + P ++ F +FAIK P++PFHTW Sbjct: 207 TDRAGLGPDGRGTFDHRLITDAVAD--GSLQIPSGAALLLFSGFTLAFAIKAPLWPFHTW 264 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP A V A A +V + ++ K+G + +R+ LPLFP A+ PV+ L++I+IIY L Sbjct: 265 LPGAAVAATPASAVLMMAVVDKVGTFAMLRYSLPLFPGAADTATPVMVTLAVISIIYGGL 324 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 +++ QTD+ +LIAY+SI+H G++ +G+F+ GA M++HGL ++ALF G + Sbjct: 325 MAIAQTDLLRLIAYASISHFGFIVLGVFAATTQSAAGATLYMVNHGLATAALFLVAGFLV 384 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 R R+I YGG+ P A V +V +A + LPG + FI EFLV + F+ AV Sbjct: 385 RRHRIREIGYYGGVQQVAPVLAGVFLVAGLATLSLPGLAPFISEFLVFVGTFEVYPVAAV 444 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 LA+ VL+A+Y LW Y++V+ G ++ DL+ RER ++ P+ V + G YP P Sbjct: 445 LATATFVLAAVYILWTYQRVMGG-PVATGLEATPDLTARERVVLAPLVVALIVLGFYPQP 503 Query: 472 IRDTFSVPLSSIIEN 486 D +++ + + Sbjct: 504 ALDVIDPAVAATVAH 518 >gi|237719845|ref|ZP_04550326.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4] gi|229451114|gb|EEO56905.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4] gi|295086637|emb|CBK68160.1| NADH dehydrogenase subunit M [Bacteroides xylanisolvens XB1A] Length = 481 Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 143/400 (35%), Positives = 235/400 (58%), Gaps = 7/400 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 SY +GVDGIS+ +++L+ + +SW+ +Q +EY + F +L V G F+S+D+ Sbjct: 63 SYSVGVDGISVAMLLLSAVIVFTGTFASWR-LQPLTKEYFLWFTLLSMGVFGFFISVDLF 121 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSS 193 ++F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + T + Sbjct: 122 TMFMFYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIYFGSGATTMN 181 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++++ + PF+ Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 182 LLEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 241 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A+ + + L+ I+++Y + + VQTD+K + AYSS++H G Sbjct: 242 LGGYGCFRIAMYLMPEAANELSWIFLILTGISVVYGAFSACVQTDLKYINAYSSVSHCGL 301 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP + Sbjct: 302 VLFAILMLNQTAATGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRELAGLMKIMPFLS 361 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V ++ +AN+GLPG SGFI E + + FQN++ T+ ++A +V++A+Y L L Sbjct: 362 VCYVIAGLANLGLPGLSGFIAEMTIFVGSFQNNDVFHRTLTIIACSSIVITAVYILRLVG 421 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K+++G + +L D + ER V + V G+ P Sbjct: 422 KILYGTCTNKHHLELTDATWDERVAVICLIVCVAGLGMAP 461 >gi|308152266|emb|CBI83575.2| NU4M (ND4) subunit of mitochondrial NADH:ubiquinone oxidoreductase (complex I) [Pichia pastoris] Length = 491 Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 155/431 (35%), Positives = 253/431 (58%), Gaps = 9/431 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 F+ FQ IE F + + G+DGIS+LLV+LT L P ILS+WK+++ + Y Sbjct: 64 FNSNYYGFQNIER------FLNIYWGIDGISLLLVLLTLILGPIAILSNWKNLKGYYTYY 117 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 +I+ +L ++ F+ LD++ FYI FE++L P+F++IG++G + + AAY +YT Sbjct: 118 VISINMLVILMALNFICLDLVSFYILFESTLAPLFLLIGIYGANNKNKAAYYVLIYTLAS 177 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 S+FML +IV+ ++ I + + ++Q ++I A+K P+ P HTWLP Sbjct: 178 SLFMLLSIVIYYIIINSTDYIYINNI-ILSINLQSLLFIGIIIGIAVKTPLMPVHTWLPT 236 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 H ++P GS+ LAG++LK+ YG IR LLP S F P+I+ +S++ +IY+SL+++ Sbjct: 237 VHSESPLGGSILLAGVILKLAIYGVIRLLLPNLSEISMMFTPIIYIISILTLIYSSLITL 296 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDR 353 QTD+K +IAYSSI+H+ IGIF+ G+ G++ L+HG VS ALF V G++YDR Sbjct: 297 KQTDLKVIIAYSSISHLAVCMIGIFANNLIGINGSLILCLAHGFVSPALFILVGGILYDR 356 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 H R I Y GL MP +++ ++VF+ N G P + F+GEFL I + L Sbjct: 357 YHNRLINYYQGLSTFMPIFSIYLVVFSFCNTGTPLSGNFVGEFLSITGAVIRHPIIGSLT 416 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 + V+LSA Y + L ++ G + + D++ RE ++ + + T+ GIYP + Sbjct: 417 AASVLLSACYQMKLTNRLT-GSVFSQYLHITNDVTNREIFLLNWLLIPTIIIGIYPSFVT 475 Query: 474 DTFSVPLSSII 484 + ++ S++I Sbjct: 476 NILNLASSTLI 486 >gi|166364255|ref|YP_001656528.1| NAD(P)H-quinone oxidoreductase subunit M [Microcystis aeruginosa NIES-843] gi|166086628|dbj|BAG01336.1| NADH dehydrogenase subunit 4 [Microcystis aeruginosa NIES-843] Length = 516 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 161/473 (34%), Positives = 255/473 (53%), Gaps = 17/473 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVF-----DKGRS 60 LS + +LP +G ++ G F L T+ F+ ++ WS++ + + Sbjct: 2 LSTLLWLPIIGAIIV------GLFPDKFAPAKLRQITLFFVAAVLFWSLYLLTQYNLTSN 55 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ EY W SY+LGVDG+S+LL++L FLT I SS + I E R Y I L Sbjct: 56 GFQFSEYREWAKPIGLSYNLGVDGLSLLLIILNCFLTGIAIYSSEEKI-ERPRLYYILIL 114 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++ + V GA ++ ++LLF +F+E LIP +++I +WGG +R YA+ KF LYT + +L Sbjct: 115 LINAGVSGALMAKNLLLFIVFYELELIPFYLMIAIWGGEKRGYASIKFLLYTAVSGLLVL 174 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A + + + + + + F Q + F IKIP+ P HTWLP+A+ +A Sbjct: 175 AAFLGIGFLNGGTFDYSSLSTADFSQKTQLLLLTLLLVGFGIKIPLVPLHTWLPDAYTEA 234 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 A ++ L GI+ K+G YG +RF L LFP AP + + +I++IY +L ++ Q DI Sbjct: 235 SPATAILLGGILAKLGTYGLVRFGLQLFPETWSLIAPGLAIVGVISVIYGALSAIAQKDI 294 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+++AYSSI HMGY+ + +G V GA+ QM+SHGL+ + LF+ VG++ + TRD+ Sbjct: 295 KRMVAYSSIGHMGYILVAAAAGTGLSVLGAVAQMISHGLILALLFYLVGIVERKAGTRDL 354 Query: 360 FAYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 GL + +P + ++++ MA+ G+PG GF+ EF+V F VL Sbjct: 355 DVLNGLMNPIRGLPLVSALLILAGMASAGIPGLVGFVAEFIVFQGSFSRFPVQTVLCIIA 414 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+A+Y + L + FG K+ + E + + VL VF GI P Sbjct: 415 SGLTAVYFVILLNRTCFG-KLDNKLAYYPKVLKSETIPAFVLMVLIVFLGIQP 466 >gi|113953409|ref|YP_731074.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. CC9311] gi|113880760|gb|ABI45718.1| NAD(P)H-quinone oxidoreductase NdhD subunit [Synechococcus sp. CC9311] Length = 523 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 150/424 (35%), Positives = 238/424 (56%), Gaps = 11/424 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD SS Q++E +W+ + LG DG+S LVVL+ +T + +SW ++Q + Sbjct: 69 FDPSDSSLQLVERVNWVPSIGLEWSLGADGLSAPLVVLSGLVTLLSVAASW-NVQHKTKL 127 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV S FLS D LLF++ +E L+P++++I +WGGS R YAA KF LYT Sbjct: 128 YFGLLLVQASAQGLVFLSQDFLLFFLAWELELVPVYLLIAIWGGSNRQYAATKFILYTAI 187 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF-SIQYWMWIAFFCSFAIKIPMFPFHTWL 232 S+ +L + + + T ++ ++ P + ++ F F +K+PMFP HTWL Sbjct: 188 ASLLILISGLALALSGDTFTLNLTELAARSPGGTFGLLCYLGFLIGFGVKLPMFPLHTWL 247 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH +A S+ LAG++LKMGGY +RF + + P A AP + L ++ IIY +L Sbjct: 248 PDAHGEANAPVSMLLAGVLLKMGGYALLRFNVQMLPDAHLVLAPALIVLGIVNIIYGALN 307 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q ++K+ IA SS++HMG+V +GI + + GAM QM+SHGL+++A+FF G Y+ Sbjct: 308 AFAQDNVKRRIACSSVSHMGFVLLGIGAVDALSLSGAMLQMISHGLIAAAMFFVTGCFYE 367 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----- 407 R T I GGL +P + ++A++ LPG SGFI E + + + N Sbjct: 368 RTKTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGFISEITIFLGITSQENFTTLF 427 Query: 408 --TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 T +A+ G+VL+ +Y L + R+V FG + + + D+ RE + + V T+ Sbjct: 428 RVTTVAIAAIGLVLTPMYLLSMCRRVFFG-PRIPALAFIDDMRSRELVIGLTLLVPTLVI 486 Query: 466 GIYP 469 GI+P Sbjct: 487 GIWP 490 >gi|320160457|ref|YP_004173681.1| NADH-quinone oxidoreductase subunit M [Anaerolinea thermophila UNI-1] gi|319994310|dbj|BAJ63081.1| NADH-quinone oxidoreductase chain M [Anaerolinea thermophila UNI-1] Length = 491 Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 160/474 (33%), Positives = 272/474 (57%), Gaps = 11/474 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M P LS++ F+P + +IL + +++ +AL S ++ + +V+ +D Sbjct: 1 MGFPILSLIIFIPLVAGLIIL--AMPAERKQAIRVIALIASLLDLALAFWVYFAYDVQLG 58 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 +Q IE W+ +Y GV+G+S+ LV+L + ++ SW ++E RE+ ++ Sbjct: 59 GYQFIERMEWVKSLGIAYFTGVNGVSVPLVLLGAVVLTAGVMVSWH-VEERPREFFAFYM 117 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFM 178 L + V G F SLD+ + + FFE ++ P +++I +WG R Y + K LY F GS+ Sbjct: 118 FLGTSVQGVFCSLDLFMLFFFFELAVFPKYLMIAIWGYPKTRDYGSMKLTLYLFLGSVLS 177 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L ++ M W + D+ + + FS Q ++ F FAI +FPFH+W P+ H Sbjct: 178 LVGVLAM-WSAGGHTF-DMLQLEQAGFSRAFQIGWFLVVFGGFAILGGIFPFHSWAPDGH 235 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V APTA S+ LAG+ +K+G + +R + L P +Q++AP+I L + ++Y +L++M+Q Sbjct: 236 VAAPTAVSMMLAGVEMKVGAFAALRVAITLMPEGAQFYAPLILALGTVNVVYGALIAMIQ 295 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 +D K +I +SS++HMG V IG + + G+ GA QM SHG++++ F VG++YDR HT Sbjct: 296 SDFKYVIGFSSVSHMGLVMIGFATLNREGLLGAGLQMFSHGVMTALFFAVVGMVYDRAHT 355 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I GGLV MP A+ +V + +MG+P SGF+ EF + M +Q VA++A G Sbjct: 356 RHIPELGGLVQKMPLAALGFIVAGLVSMGMPAFSGFVAEFPIFMGAWQVMPIVAIIAILG 415 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQL-KDLSLRERCMVYPIAVLTVFFGIYP 469 V+++A Y L + R+V FG S E + L D+S+ ++ ++ ++ + + GI P Sbjct: 416 VIVTAGYILLVVRRVFFG-SLPENLNVLVGDVSVMDKIVIVGLSAMMILMGILP 468 >gi|119714796|ref|YP_921761.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nocardioides sp. JS614] gi|119535457|gb|ABL80074.1| NADH dehydrogenase subunit M [Nocardioides sp. JS614] Length = 509 Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 167/502 (33%), Positives = 279/502 (55%), Gaps = 15/502 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 +LP+L+ + LP +G V F G G+ + T+ ++ V +D G Sbjct: 3 DLPWLTALWVLPLVGALVTAFVPRATGSALPKQVGLLFALLTLAVGIAIAV--QYDTG-D 59 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF- 118 Q+ E + WI+ F +Y LGVDG+ +LL+++T L P ++++W + +A+ Sbjct: 60 GMQLTETHTWIEAFGVNYALGVDGLGLLLILMTVALVPLVLVATWNDADDRSSAAFVAWA 119 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L LES + F + D+ LFY+ FEA+LIP + +IG +G + R AA KF +Y G + + Sbjct: 120 LALESFSLAVFAATDVFLFYMVFEATLIPAYFLIGRFGQAGRGRAALKFLMYQLGGGLVL 179 Query: 179 LFAI----VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 L ++ VV S ++ + + W+++ F +FA+K P+FP HTWL + Sbjct: 180 LASVIGLYVVSADAGNPSYLLSDLQQLDLSTNTERWLFVGFMIAFAVKAPLFPLHTWLAD 239 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 +A SV L I+ K+G +G +RF L LFP ASQ+ PV+ L+L++I+Y +LV++ Sbjct: 240 TTEKATPGTSVLLVCILDKIGTFGMLRFGLGLFPEASQWATPVVVALALVSIVYGALVAI 299 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q DI +LI +S++H G++T+GIF+ G GA+ M++HG+ ++ALF G + R Sbjct: 300 GQDDILRLIGLTSLSHFGFITLGIFAFSSQGGSGAILYMVNHGVGTAALFLIAGYLIRRK 359 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T+ I G+ P A + +V ++ +GLPG S F+ E LV++S F V +A Sbjct: 360 GTQLISQIAGVETKAPLLAGLFLVAGLSTLGLPGLSQFVSEILVLISAFDYHWWVGAIAV 419 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 G+VL+A+Y LWLY++ + G + + + DL+ RE V P+ VFFG +P+P+ D Sbjct: 420 TGIVLAAIYVLWLYQRTMTGPATPGD-EAMTDLNRRELVAVVPLIAALVFFGFFPMPLLD 478 Query: 475 TFSVPLSSIIENYTLKTGYSDS 496 + + S++++ G SD Sbjct: 479 VSNPTVDSLLQH----VGVSDE 496 >gi|332830200|gb|EGK02828.1| hypothetical protein HMPREF9455_01078 [Dysgonomonas gadei ATCC BAA-286] Length = 476 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 144/412 (34%), Positives = 246/412 (59%), Gaps = 7/412 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 S+ L DG++I +++LTT L P IL++ +N + + + + GAFLS D L Sbjct: 65 SFSLKADGLAIAMILLTTILLPIIILAAHNREFKNEKLLFSLIMFMAFAMTGAFLSSDAL 124 Query: 136 LFYIFFEASLIPMFVIIGVWGGSE---RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 L+Y+F+E SLIP++ II +WG E R AA FFL+TF GS+FM+ AI+ M + S Sbjct: 125 LYYVFWEMSLIPIYFIIILWGNGEMAKRRKAAMTFFLFTFAGSLFMMAAIIYM-YTTTGS 183 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++ + + + Q W+++AFF ++AIKIP+FPFHTW N + +AP G++ LAG+M Sbjct: 184 FQLEAFYNANLSNTEQIWIFLAFFLAYAIKIPIFPFHTWQANVYQKAPAVGTMLLAGLMS 243 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 KMG Y IR+ +P P A+Q V+ L +I ++Y +++++ Q D+K+ +AY+S++H+G Sbjct: 244 KMGAYSVIRWQIPTTPYAAQELRTVVLILCIIGVVYGAIMALRQDDLKRFMAYASLSHVG 303 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 +V G ++ G++GA+ +L+HG LF+ V +I +R +T I GG+ + P++ Sbjct: 304 FVAAGSYALTYDGLQGAVVLILAHGFGIVGLFYSVDIIQNRTNTLSISKLGGIASHTPKF 363 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 V + ++++G+P T FIGEF ++ +++ + A+ + L AL+ L ++++V+ Sbjct: 364 TVAFFLAILSSIGVPLTFNFIGEFTIMYGLYEVNLWYALTIGTSLFLGALFMLRMFQQVM 423 Query: 433 FGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 G K +DLS E + I + +FFG+Y P+ D S L I+ Sbjct: 424 LGEPSETK---FRDLSKTEIFVFSLIVTVLIFFGVYVKPVTDLVSSSLEDIV 472 >gi|78778979|ref|YP_397091.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9312] gi|78712478|gb|ABB49655.1| NADH dehydrogenase subunit M [Prochlorococcus marinus str. MIT 9312] Length = 512 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 169/504 (33%), Positives = 277/504 (54%), Gaps = 18/504 (3%) Query: 1 MNL---PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFV-WSVF 55 MNL P+LS + LP +G ++ F SS G ++L I+F+ + V + F Sbjct: 1 MNLESFPWLSSIVLLPLIGALIMPFLSSKEGEDNTLPRNISLSFLFIDFLLIIGVLFQKF 60 Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 + SS Q++E W+ + LGVDG+S LV L+ +T +SWK I++ Y Sbjct: 61 NTSDSSLQLVERAVWLPSIGLEWSLGVDGLSAPLVALSGLITFLSAAASWK-IKKKSNLY 119 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 LV S FLS D LLF++ +E L+P++++I +WGG +++YAA KF LYT Sbjct: 120 FALLLVQASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGKKKLYAATKFILYTALA 179 Query: 175 SIFMLFA--IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 S+ +L + + + E T +I DL S+ ++ F F +K+P+FP HTWL Sbjct: 180 SLLILISGLAIALSGETFTLNITDL-TNKHVTGSLALLSYLGFLIGFGVKLPIFPLHTWL 238 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH +A S+ LAGI+LKMGGY +RF + + P AP + L +I IIY +L Sbjct: 239 PDAHGEANAPVSMLLAGILLKMGGYALLRFNVQILPEVHLQIAPALIILGIINIIYGALN 298 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+ Sbjct: 299 AFAQDNVKRRIACSSVSHMGFVLLGIGAVDSLGISGAMLQMISHGLIAAAMFFVTGSFYE 358 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------ 406 R +T I GGL +P + ++A++ LPG SGFI E + + + Sbjct: 359 RTNTLSIPNMGGLAKVLPITFAFFLTSSLASLALPGMSGFISEITIFLGITSQEGFSSLF 418 Query: 407 NTVAVL-ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 ++ +L A+ G+VL+ +Y L + R+V FG + + +K+++ RE + + + T+ Sbjct: 419 RSITILIAAIGLVLTPIYLLSMCRRVFFG-PRIPALATVKEMNGRELTIGFSLLFPTLVI 477 Query: 466 GIYPVPIRDTFSVPLSSIIENYTL 489 G +P + + +++ + TL Sbjct: 478 GFWPKIAINLYESSTNALSQQLTL 501 >gi|282881439|ref|ZP_06290113.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella timonensis CRIS 5C-B1] gi|281304665|gb|EFA96751.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella timonensis CRIS 5C-B1] Length = 481 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 145/421 (34%), Positives = 246/421 (58%), Gaps = 15/421 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 +Y +GVDGIS+++++L++ + +SW+ ++ +EY + F +L V G F+S+D+ Sbjct: 63 AYTVGVDGISVVMLLLSSIIVFTGTFASWQ-LKPMTKEYFLWFTLLSIGVFGFFISIDLF 121 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + YAA K L GS ++ I+ + + T + Sbjct: 122 TMFMFYEVALIPMYLLIGVWGSGPKEYAAMKLTLMLMGGSALLIIGILGIYFYSGATTMN 181 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++++ A+ P +Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 182 VLEIAALHNIPVDVQKIFFPLIFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 241 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A+Q A + L+ I+++Y +L + VQTD+K + AYSS++H G Sbjct: 242 LGGYGCFRIAMFLLPEAAQELAWIFLILTTISVVYGALSACVQTDLKYINAYSSVSHCGL 301 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + K+ GA+ QMLSHGL+++ F +G+IY R HTRD+ GGL+ MP Sbjct: 302 VLFALLMMTKTACTGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRQLGGLMKIMPFLG 361 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V +V +AN+GLPG SGF+ E + + F N++ T ++A +V++A+Y L + Sbjct: 362 VGYVVAGLANLGLPGFSGFVAEMTIFVGSFANNDTFHRTATIIACTSIVVTAVYILRVVG 421 Query: 430 KVVFGVSKCEKVQQLKDLSLRER----CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 K+++ +QL D + ER C+++ +A L GI P+ + + + I+ Sbjct: 422 KILYQKVANPHFEQLTDATWDERVAVMCLIFCVAGL----GIAPLWASNVINDAVGPILL 477 Query: 486 N 486 N Sbjct: 478 N 478 >gi|90655509|gb|ABD96348.1| NADH dehydrogenase I chain 4 [uncultured marine type-A Synechococcus GOM 3O12] Length = 496 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 160/426 (37%), Positives = 248/426 (58%), Gaps = 13/426 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD + Q+IE W+ Y L VDG+S+ LV++ L ++S +SI+ R Sbjct: 51 FDPADAGLQLIEQARWVHAIGLDYALAVDGLSLPLVLMNGVLCLVAAIAS-RSIENRPRI 109 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV+ V GAFL+ ++LLF++F+E LIP++++I VWGG+ R YAA KF + T Sbjct: 110 YFALLLVISGAVNGAFLAQNLLLFFLFYELELIPLWLLIAVWGGANRAYAATKFLIVTAV 169 Query: 174 GSIFMLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 + +L A + + + + S+ + A + + Q + A F IKIP+FPFHTW Sbjct: 170 SGVLILAAFLGLAFVSGSMDFSLQPIMA-GELGMTAQLVLMGALLIGFGIKIPLFPFHTW 228 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A T SV LAG++LK+G YG +RF L LFP A Q +P + + I+++Y SL Sbjct: 229 LPDAHTEASTPVSVLLAGVLLKLGTYGLLRFCLGLFPEAWQLASPWLAGWAAISVLYGSL 288 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ QTD+K+++AYSS+ HMGYV + + G+ GA+FQM+SHGL+S LF VGV+Y Sbjct: 289 AAIAQTDMKRMVAYSSVGHMGYVLLAAAAATPLGLMGALFQMVSHGLISGVLFLLVGVVY 348 Query: 352 DRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 R TRD+ GL++ +P +M++ MA+ G+PG +GFI EFL+ Q Sbjct: 349 ARTGTRDLNVLRGLLNPQRGLPLTGSLMIIGVMASAGIPGMAGFISEFLIFRGSLQPFPV 408 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFG---VSKCEKVQQ--LKDLSLRERCMVYPIAVLTV 463 +L+ G L+A+Y L L + FG ++ E V L ++LRE+ +++ + Sbjct: 409 ATLLSMVGSGLTAVYFLLLVNRAFFGRLAIAPGEVVNPRILDRVALREQVPAIALSLGVL 468 Query: 464 FFGIYP 469 G+ P Sbjct: 469 ALGLVP 474 >gi|154362196|ref|YP_636349.2| NADH dehydrogenase subunit 4 [Eucalyptus globulus subsp. globulus] Length = 500 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 162/497 (32%), Positives = 279/497 (56%), Gaps = 17/497 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ + I ++ + + + + F Sbjct: 5 PWLTIIVLLPIFAGSLIFFLPHRGNKVIRWYTIC--ICSLELLLTTYTFCYHFQLNDPLT 62 Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI++F Y LG+DG+SI ++LT F+T L++ + + + R + L + Sbjct: 63 QLTEDYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSIFLLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++L +S +P +++ ++I F +F++K+P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNLETLSNQSYPVALEIILYIGFLIAFSVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+L S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLIIVGAIQIIYAALTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 362 DEMGGMAIHLPKIFTIFSILSMASLALPGMSGFLAELIVFFGIITSHQYLLMPKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL--TVFFGIYPV 470 + G++L+ +Y L + R++ +G K V L R + I++L + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGY-KLFNVPNSYFLDFGPRELFVSISILLPIIAIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + +II NY Sbjct: 481 FVLSLSVDKVEAIISNY 497 >gi|82799294|gb|ABB92220.1| NADH dehydrogenase I chain 4 [uncultured marine type-A Synechococcus 5B2] Length = 496 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 161/428 (37%), Positives = 250/428 (58%), Gaps = 17/428 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS--WKSIQENF 111 FD + Q++E W+ Y Y L +DG+S+ LV++ L C++S+ +SI+ Sbjct: 51 FDPTDAGLQLVEQARWVHYIGLDYALALDGLSLPLVLMNGVL---CLVSAIASRSIENRP 107 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 R Y LV+ V GAFL+ ++LLF++F+E LIP++++I +WGG+ R YAA KF + T Sbjct: 108 RIYFALLLVISGAVNGAFLAQNLLLFFLFYELELIPLWLLIAIWGGANRAYAATKFLIVT 167 Query: 172 FFGSIFMLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 + +L A + + T S+ + A + + Q + A F IKIP+FPFH Sbjct: 168 AVSGVLILAAFLGLALVTGTMDFSLRPVLA-GELGMASQLVLMGALLIGFGIKIPLFPFH 226 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+AH +A T SV LAG++LK+G YG +RF L LFP A Q AP + + I+++Y Sbjct: 227 TWLPDAHTEASTPVSVLLAGVLLKLGTYGLLRFCLGLFPEAWQLSAPWLAGWAAISVLYG 286 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 SL ++ QTD+K+++AYSS+ HMGYV + + G+ GA+FQM+SHGL+S LF VGV Sbjct: 287 SLAAIAQTDMKRMVAYSSVGHMGYVLLAAAAATPLGLMGALFQMVSHGLISGVLFLLVGV 346 Query: 350 IYDRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 +Y R TRD+ GL++ +P +M++ MA+ G+PG +GFI EFL+ Q Sbjct: 347 VYARTGTRDLNVLRGLLNPQRGLPLTGSLMIIGVMASAGIPGMAGFISEFLIFRGSLQPF 406 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFG---VSKCE--KVQQLKDLSLRERCMVYPIAVL 461 +L+ G L+A+Y L L + FG +S E + L ++LRE+ +++ Sbjct: 407 PLATLLSMVGSGLTAVYFLLLVNRAFFGRLTISPGEVPNPRILDRVALREQVPAIALSLG 466 Query: 462 TVFFGIYP 469 + G+ P Sbjct: 467 VLALGLVP 474 >gi|122219161|sp|Q49KU8|NU4C_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|60460858|gb|AAX21078.1| NADH-plastoquinone oxidoreductase subunit 4 [Eucalyptus globulus subsp. globulus] Length = 501 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 162/497 (32%), Positives = 279/497 (56%), Gaps = 17/497 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ + I ++ + + + + F Sbjct: 6 PWLTIIVLLPIFAGSLIFFLPHRGNKVIRWYTIC--ICSLELLLTTYTFCYHFQLNDPLT 63 Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI++F Y LG+DG+SI ++LT F+T L++ + + + R + L + Sbjct: 64 QLTEDYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLFHFLMLAM 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 123 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSIFLLIG 182 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++L +S +P +++ ++I F +F++K+P+ P HTWLP+ H +A Sbjct: 183 VLGIGLYGSNEPTLNLETLSNQSYPVALEIILYIGFLIAFSVKLPIIPLHTWLPDTHGEA 242 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+L S Q ++ Sbjct: 243 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLIIVGAIQIIYAALTSPGQRNL 302 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 362 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 363 DEMGGMAIHLPKIFTIFSILSMASLALPGMSGFLAELIVFFGIITSHQYLLMPKILITFV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL--TVFFGIYPV 470 + G++L+ +Y L + R++ +G K V L R + I++L + GIYP Sbjct: 423 MAIGMILTPIYLLSMLRQMFYGY-KLFNVPNSYFLDFGPRELFVSISILLPIIAIGIYPD 481 Query: 471 PIRDTFSVPLSSIIENY 487 + + +II NY Sbjct: 482 FVLSLSVDKVEAIISNY 498 >gi|167752191|ref|ZP_02424318.1| hypothetical protein ALIPUT_00433 [Alistipes putredinis DSM 17216] gi|167660432|gb|EDS04562.1| hypothetical protein ALIPUT_00433 [Alistipes putredinis DSM 17216] Length = 494 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 144/416 (34%), Positives = 239/416 (57%), Gaps = 7/416 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L+ + +SW+ ++ + + Y + F +L V G F+++D+ Sbjct: 77 YAVGVDGISVAMLLLSAIIVFTGTFASWQ-MKSDVKAYFLWFCLLSVGVFGFFITVDLFS 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSI 194 ++F+E +LIPM+++IGVWG + Y+A K L GS +L I+ + + +T ++ Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYSAMKLTLMLMGGSALLLCGILGIYFGAGAQTMNL 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 ++ A+ P S QY + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 HEIAALHNIPLSQQYIWFPMVFVGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 255 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A+ + + L+ I+++Y + + VQTD+K + AYSS++H G V Sbjct: 256 GGYGCFRVAMYLMPEAAHELSWIFIILTTISVVYGAFSACVQTDLKYINAYSSVSHCGLV 315 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I + GA+ QMLSHGL+++ F +G+IY R HTRDI GL+ MP AV Sbjct: 316 LFAILMMNTTAGTGAILQMLSHGLMTALFFALIGMIYGRTHTRDIRELSGLMKVMPFLAV 375 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGF+ E + F N++T V ++A +V++A+Y L + + Sbjct: 376 GYVIAGLANLGLPGLSGFVAEMTIFNGAFMNNDTFHRVVTIIACTSIVITAVYILRVIGR 435 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 +++G + E +L D + ER V + G P+ I D S +S+II Sbjct: 436 ILYGTCRNEAHLKLTDATWDERLTVICLIAAIAGMGTMPLWISDMVSGSVSTIISQ 491 >gi|167391860|ref|YP_001671732.1| NADH dehydrogenase subunit 4 [Carica papaya] gi|193806221|sp|B1A984|NU4C_CARPA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|166344187|gb|ABY86837.1| NADH-plastoquinone oxidoreductase subunit 4 [Carica papaya] Length = 500 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 276/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ + + + + F + F Q Sbjct: 5 PWLTIIVVLPISAGSLIFFLPHRGNKVIRWYTICICVLELLLTTYAFCYH-FQLDDPLVQ 63 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI++F Y LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LTEDYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFLMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIGV 182 Query: 183 VVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + T ++ ++ +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGIGLYGSTEPTLNFETLTNQSYPIALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPWLVVVGTMQIIYAASTSSGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGIGSITDPGLNGAILQIVSHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---TVAVLASF-- 415 GG+ +MP+ + + +MA++ LPG SGF+ E +V + + +L +F Sbjct: 363 EMGGMAISMPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMAKILITFVM 422 Query: 416 --GVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPVP 471 G++L+ +YSL + R++ +G K Q D RE + I + + GIYP Sbjct: 423 AIGMILTPIYSLSMSRQMFYGY-KLINAQNFSFFDSGPRELFVSISILLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + S + +I+ NY Sbjct: 482 LLSLSSDKVEAILSNY 497 >gi|317013060|gb|ADU83668.1| NADH dehydrogenase subunit M [Helicobacter pylori Lithuania75] Length = 512 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLILLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + +YH+GVDGI++ L++L + +L S ++E+ +++ I L+LE + Sbjct: 64 EMKELVYQIGVNYHVGVDGIALFLLLLNAIV----VLLSVIYVKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + I+D Y ++ F I+ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGHDYANNYGMMSFDILDWYQLN-FSSEIKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L I+Y ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIVYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGVIVMGLFLLAGILEERASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPVFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKAGNNQISVFEDLNARE 453 >gi|290486889|gb|ADD29829.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Quercus nigra] Length = 500 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 156/442 (35%), Positives = 247/442 (55%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRSSF 62 P+L+IV LP G +I F + G + L I I + + + + F Sbjct: 5 PWLTIVAVLPIFGGSLIFFLPHKGNKVIRLY--TLFICIIELLLTTYAFYYYFQLDDPLM 62 Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID+F Y LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 63 QLTEDYKWIDFFDFYWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP++++I VWGG +R+Y+A KF LYT S+F+L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLISVWGGKKRLYSATKFILYTAGSSVFLLLG 181 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + + A +P +++ +I F +FA+K P+ PFHTWLP+ H +A Sbjct: 182 VLGIGLYASNEPTFNFETSANQSYPVALEIIFYIGFLIAFAVKSPIIPFHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + P A FAP + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMEFLPRAHSIFAPWLMIVGTIQIIYAASASPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSLSDMGLNGAFLQIISHGFIGAALFFLAGTSYDRICLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ + +MA++ LPG SGF+ E +V + + N + + Sbjct: 362 DEMGGMAVLVPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQNFFLIQKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G +L+ +YSL + R++ +G Sbjct: 422 MAIGTILTPIYSLSMLRQMFYG 443 >gi|290486893|gb|ADD29831.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Trochodendron aralioides] Length = 500 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 153/437 (35%), Positives = 247/437 (56%), Gaps = 14/437 (3%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI+ F S+ LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 63 QLEEDYKWINIFDSHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M ++ + +S+ + + F +FA+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPTLNFETSANKSYSVGLEIIFYFGFLIAFAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIGGTIQIIYAASTSSGQHNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG+ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFTIIGIGSITDTGLNGALLQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 DEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYLLMPKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+ +YSL + R++ +G K V D RE + I + + GIYP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGY-KLFNVPNSYFFDSGPRELFVSISIFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 481 FVLSLSVDKVEAILSNY 497 >gi|22651989|gb|AAN03541.1|AF381037_1 NADH dehydrogenase subunit D2 [Synechococcus sp. PCC 7002] Length = 532 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 149/436 (34%), Positives = 246/436 (56%), Gaps = 28/436 (6%) Query: 52 WSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN 110 W +D GR+ FQ+ + + WI ++ LGVDG+S+ L++L T +T L++W ++ + Sbjct: 54 WQNYDFGRTEFQLTKNFAWIPQLGLNWSLGVDGLSMPLIILATLITTLATLAAW-NVTKK 112 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + + LV+ S IG F D+LLF+I +E L+P++++I +WGG +R+YAA KF LY Sbjct: 113 PKLFAGLILVMLSAQIGVFAVQDLLLFFIMWELELVPVYLLISIWGGKKRLYAATKFILY 172 Query: 171 TFFGSIFML-FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 T GS+F+L F + + + + + + +P +++ + F F +K+P+FP H Sbjct: 173 TALGSVFILAFTLALAFYGGDVTFDMQALGLKDYPLALELLAYAGFLIGFGVKLPIFPLH 232 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 +WLP+AH +A S+ LAG++LKMGGYG IR + + P A FAP++ L ++ I+Y Sbjct: 233 SWLPDAHSEASAPVSMILAGVLLKMGGYGLIRLNMEMLPDAHIRFAPLLIVLGIVNIVYG 292 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 +L + QT++K+ +A SSI G ++G+ S G+ GA+ QMLSHG +++ALFF GV Sbjct: 293 ALTAFGQTNLKRRLASSSIFPHGLSSLGLLSFTDLGMNGAVLQMLSHGFIAAALFFLSGV 352 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT- 408 Y+R HT + G+ MP+ + MA++ LPG SGF+ E V + + NS+ Sbjct: 353 TYERTHTLMMDEMSGIARLMPKTFAMFTAAAMASLALPGMSGFVSELTVFLGL-SNSDAY 411 Query: 409 ------VAV-LASFGVVLSALYSLW----LYRKVVFGVSKCEKVQQLKDLSLRE----RC 453 +A+ L + GV+L+ + Y K +C +D RE C Sbjct: 412 SYGFKPIAIFLTAVGVILTPITCFQCCGVFYGKGSQAPPRCGG----EDAKPREIFVAVC 467 Query: 454 MVYPIAVLTVFFGIYP 469 ++ PI + G+YP Sbjct: 468 LLAPI----IAIGLYP 479 >gi|27885259|gb|AAO26110.1| NADH dehydrogenase subunit 4 [Ichthyothere terminalis] Length = 346 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 135/336 (40%), Positives = 212/336 (63%), Gaps = 4/336 (1%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEA 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMVVGTIQIIYAASTSLGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGE 395 GG+ MP+ + F+MA++ LPG SGF+ E Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAE 345 >gi|29349467|ref|NP_812970.1| NADH dehydrogenase I subunit M [Bacteroides thetaiotaomicron VPI-5482] gi|253570163|ref|ZP_04847572.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6] gi|29341376|gb|AAO79164.1| NADH dehydrogenase I, chain M [Bacteroides thetaiotaomicron VPI-5482] gi|251840544|gb|EES68626.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6] Length = 494 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 159/479 (33%), Positives = 264/479 (55%), Gaps = 17/479 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 + FLSI +P L +L + G ++ GV + ++ I S+ + ++ RS+ Sbjct: 1 MNFLSIFVLIPLL----MLAGLWAARGIKAIRGVMVTGASALLIASVVLTFMYLGERSAG 56 Query: 63 QMIEYYHWIDYF------CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 E D SY +GVDGIS+ +++L+ + +SW+ +Q +EY + Sbjct: 57 NTAEMLFRADTLWYAPLHISYSVGVDGISVAMLLLSAVIVFTGTFASWR-LQPLTKEYFL 115 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 F +L V G F+S+D+ ++F+E +LIPM+++IGVWG + YAA K L GS Sbjct: 116 WFTLLSMGVFGFFISIDLFTMFMFYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSA 175 Query: 177 FMLFAIVVMCWEK--KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L I+ + + T +++++ + PF+ Q + F F + +FPFHTW P+ Sbjct: 176 FLLIGILGIYFGSGATTMNLLEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPD 235 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 H APTA S+ AG+++K+GGYGC R + L P A+ + + L+ I+++Y + + Sbjct: 236 GHASAPTAVSMLHAGVLMKLGGYGCFRIAMYLMPEAANELSWIFLILTGISVVYGAFSAC 295 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 VQTD+K + AYSS++H G V I ++ GA+ QMLSHGL+++ F +G+IY R Sbjct: 296 VQTDLKYINAYSSVSHCGLVLFAILMLNQTAATGAILQMLSHGLMTALFFALIGMIYGRT 355 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVA 410 HTRD+ GL+ MP +V ++ +AN+GLPG SGFI E + + FQN++ T+ Sbjct: 356 HTRDVRELTGLMKVMPFLSVCYVIAGLANLGLPGLSGFIAEMTIFVGSFQNNDVFHRTLT 415 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++A +V++A+Y L L K+++G + L D + ER V + V G+ P Sbjct: 416 IIACSSIVITAVYILRLVGKILYGTCTNKHHLALTDATWDERVAVICLIVCVAGLGMAP 474 >gi|15645886|ref|NP_208064.1| NADH dehydrogenase subunit M [Helicobacter pylori 26695] gi|2314437|gb|AAD08316.1| NADH-ubiquinone oxidoreductase, NQO13 subunit (NQO13) [Helicobacter pylori 26695] Length = 512 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 265/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLILLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + +YH+GVDGI++ L++L + +L S ++E +++ I L+LE + Sbjct: 64 EMKELVYQIGVNYHVGVDGIALFLLLLNAIV----VLLSVIYVKERRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + ++ + I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGYDYANNYGMMSFDILDWYQLN-FSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I +L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPDLSEIYLTPIAIAALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGIIVMGLFLLAGILEERASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKAGSNQISVFEDLNARE 453 >gi|299148398|ref|ZP_07041460.1| NADH dehydrogenase I, M subunit [Bacteroides sp. 3_1_23] gi|298513159|gb|EFI37046.1| NADH dehydrogenase I, M subunit [Bacteroides sp. 3_1_23] Length = 494 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/479 (32%), Positives = 264/479 (55%), Gaps = 17/479 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 + FLSI +P L +L + G ++ GV + ++ I S+ + ++ RS+ Sbjct: 1 MNFLSIFVLIPLL----MLAGLWAARGIKAIRGVMVTGASALLIASVVLTFLYLGERSAG 56 Query: 63 QMIEYYHWIDYF------CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 E D SY +GVDGIS+ +++L+ + +SW+ +Q +EY + Sbjct: 57 NTAEMLFRADTLWYAPLHISYSVGVDGISVAMLLLSAVIVFTGTFASWR-LQPLTKEYFL 115 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 F +L V G F+S+D+ ++F+E +LIPM+++IGVWG + YAA K L GS Sbjct: 116 WFTLLSMGVFGFFISVDLFTMFMFYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSA 175 Query: 177 FMLFAIVVMCWEK--KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L I+ + + T +++++ + PF+ Q + F F + +FPFHTW P+ Sbjct: 176 FLLIGILGIYFGSGATTMNLLEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPD 235 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 H APTA S+ AG+++K+GGYGC R + L P A+ + + L+ I+++Y + + Sbjct: 236 GHASAPTAVSMLHAGVLMKLGGYGCFRIAMYLMPEAANELSWIFLILTGISVVYGAFSAC 295 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 VQTD+K + AYSS++H G V I ++ GA+ QMLSHGL+++ F +G+IY R Sbjct: 296 VQTDLKYINAYSSVSHCGLVLFAILMLNQTAATGAILQMLSHGLMTALFFALIGMIYGRT 355 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VA 410 HTRD+ GL+ MP +V ++ +AN+GLPG SGFI E + + FQN++ + Sbjct: 356 HTRDVRELAGLMKVMPFLSVCYVIAGLANLGLPGLSGFIAEMTIFVGSFQNNDQFHRVLT 415 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++A +V++A+Y L L K+++G + +L D + ER V + V G+ P Sbjct: 416 IIACSSIVITAVYILRLVGKILYGTCTNKHHLELTDATWDERVAVICLIVCVAGLGMAP 474 >gi|325676671|ref|ZP_08156346.1| NADH-quinone oxidoreductase subunit M [Rhodococcus equi ATCC 33707] gi|325552526|gb|EGD22213.1| NADH-quinone oxidoreductase subunit M [Rhodococcus equi ATCC 33707] Length = 526 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 160/465 (34%), Positives = 269/465 (57%), Gaps = 24/465 (5%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTF 94 +AL + + ++ + F+ G +Q +E + WI F + Y LG+DGI++ LV+LT Sbjct: 35 LALVVGSATLAIAVLLAVRFEPGGERYQFVESHSWIPAFGTRYDLGLDGIALALVLLTAV 94 Query: 95 LTPFCILSSWKSIQENFRE------YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 L P +L+ W+ + + Y+ LV+ESMV+ +FL+LD+LLFY+ FEA LIPM Sbjct: 95 LVPLLLLAGWRDVDADDTRPRATHLYVALILVVESMVLMSFLALDILLFYVLFEAMLIPM 154 Query: 149 FVIIGVWG--GSERIYAAYKFFLYTFFGSIFMLFAI----VVMCWEKKT--------SSI 194 + +IG +G G R AA KF LY G + ML A+ VV +I Sbjct: 155 YFLIGGYGQPGPGRSRAAVKFLLYNLLGGLIMLAAVIGLYVVTAGADSPFTSGTFDFRAI 214 Query: 195 IDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +D + + S + +++ F +FA+K P++P H+WLP+A VQ+ +V + ++ Sbjct: 215 VDAVSTGELTMSGPVANALFLGFMFAFAVKAPLWPLHSWLPDAAVQSTPVTAVLMMAVVD 274 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+G + +R+ L LFP A+QYFAP++ L++++I+Y +L+++ QTD+ +LIAY+SI+H G Sbjct: 275 KVGTFAMLRYCLQLFPDAAQYFAPLVVTLAVVSIVYGALLAIGQTDVMRLIAYTSISHFG 334 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 ++ +G+F+ G G+ M++HG ++AL G + R TR I YGG+ P Sbjct: 335 FIVLGVFAMTSQGQSGSTLYMVNHGFSTAALMLVAGFLVTRRGTRVIADYGGVQKVAPLL 394 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ +A + LPG + F+ EFLV++ + AV+A+ +VL+ALY LWLY++++ Sbjct: 395 AGTFLIAGLATLSLPGLAPFVSEFLVLIGTYTRYPAAAVVATVALVLAALYVLWLYQRMM 454 Query: 433 FGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 G +++DL RE +V P+ L + G+YP P+ D + Sbjct: 455 TG-PVASGTDRIRDLRRRELVVVTPLIALLLVLGVYPKPVLDVVT 498 >gi|15606574|ref|NP_213954.1| NADH dehydrogenase I chain M [Aquifex aeolicus VF5] gi|2983795|gb|AAC07353.1| NADH dehydrogenase I chain M [Aquifex aeolicus VF5] Length = 501 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 159/423 (37%), Positives = 250/423 (59%), Gaps = 11/423 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSS-FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTT 93 +AL + + F+ SL FD R + Q E Y + LG+DG+S+L+ LTT Sbjct: 36 IALLGTGLTFLVSLIALFKFDFARDNVIQFYEEYTILKELGVKLSLGMDGLSLLMYFLTT 95 Query: 94 FLTPFCILSSW--KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 ++ ++ S + I+ +EY IAFL+ ES VIG F + ++++FY+F+E +L+PM + Sbjct: 96 LVSLIAVIWSIGDEKIKHRLKEYYIAFLLTESFVIGVFTTFNLIVFYVFYELTLLPMLFV 155 Query: 152 IGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKK-----TSSIIDLYAMSKFPF 205 IG+WG R+Y+AYKFF+Y F S+F+L I + + K T ++L ++ P Sbjct: 156 IGIWGYKLRLYSAYKFFVYIFISSLFLLLGIASISTYHYKMNGSFTFEYLELLNLN-IPN 214 Query: 206 SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 + ++++ FF +FA+K P+ PFHTWLP+AH +APTAGSV LA I+LKMG Y +RF + Sbjct: 215 GFEIFLFLLFFIAFAVKTPIVPFHTWLPDAHGEAPTAGSVVLAAILLKMGTYALVRFNIG 274 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 LFP A+ +P + L + +II AS +++ QT+IK+ +AYSS++HMG+V F G Sbjct: 275 LFPDAALELSPYLVALGIYSIIMASWMTISQTNIKRFVAYSSVSHMGFVVTAAFLLNMEG 334 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 + ++ +M +HGL S+ LF G IY++LHT + + G + MP +A + A MG Sbjct: 335 LRASIIEMFAHGLTSAGLFMVAGYIYNKLHTFNFASLRGAIKFMPLFATITAATAFAAMG 394 Query: 386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 LPG S F G+FL I++ + S +A L F SA Y L+ + + V + + K Sbjct: 395 LPGGSSFWGKFLTILAAREYSTPLAFLVVFAAFFSAAYVLYFLKTLYLDVREESVLIHFK 454 Query: 446 DLS 448 D+S Sbjct: 455 DVS 457 >gi|304382888|ref|ZP_07365371.1| NADH-quinone oxidoreductase subunit M [Prevotella marshii DSM 16973] gi|304336073|gb|EFM02320.1| NADH-quinone oxidoreductase subunit M [Prevotella marshii DSM 16973] Length = 488 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 147/416 (35%), Positives = 238/416 (57%), Gaps = 7/416 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+++++LT+ + +SW+ ++ +EY + F +L V G F+S+DM Sbjct: 64 YSVGVDGISVVMLLLTSIIVFTGTFASWQ-LKPMTKEYFLWFTLLSIGVYGFFISIDMFT 122 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSSI 194 ++F+E +LIPM+++IGVWG + YAA K L GS ++ I+ + + T ++ Sbjct: 123 MFMFYEVALIPMYLLIGVWGSGNKEYAAMKLTLMLMGGSALLIIGILGIYFFSGATTMNV 182 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 I++ AM P SIQ + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 183 IEIAAMHNIPVSIQKVFFPFVFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 242 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A+ A + L+ I+++Y + + VQTD+K + AYSS++H G V Sbjct: 243 GGYGCFRIAMFLLPEAAHDLAWIFLILTTISVVYGAFSACVQTDLKYINAYSSVSHCGLV 302 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + ++ GA+ QMLSHGL+++ F +G+IY R HTRDI GL+ MP V Sbjct: 303 LFALLMMTQTSCTGAILQMLSHGLMTALFFALIGMIYGRTHTRDIRQLSGLMKIMPFLGV 362 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYRK 430 +V +AN+GLPG SGF+ E + + FQN++T ++A +V++A+Y L Sbjct: 363 GYVVAGLANLGLPGFSGFVAEMTIFVGSFQNADTFHRAATIIACTSIVVTAVYILRTVGF 422 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 ++F + + L D + ER V + V G+ P+ S + +IE+ Sbjct: 423 ILFNKVENPHYETLTDATWDERVAVCGLIVCVAGLGLAPLWASQVISDTIGPMIEH 478 >gi|33866016|ref|NP_897575.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. WH 8102] gi|33638991|emb|CAE07997.1| putative NADH dehydrogenase I chain 4 (or M) [Synechococcus sp. WH 8102] Length = 523 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 153/442 (34%), Positives = 245/442 (55%), Gaps = 13/442 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD S Q++E W+ + LG DG+S LVVL+ +T + +SW S+Q + Sbjct: 69 FDPSLSGLQLVERVSWLPSIGLEWSLGADGLSAPLVVLSGLVTFLSVAASW-SVQRKCKL 127 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV S FLS D LLF++ +E L+P++++I +WGG R YAA KF LYT Sbjct: 128 YFALLLVQASAQGLVFLSQDFLLFFLAWELELVPVYLLIAIWGGQNRQYAATKFILYTAL 187 Query: 174 GSIFMLFA--IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 S+ +L + + + ++ T ++ +L + S S ++ F F +K+PMFP HTW Sbjct: 188 ASLLILISGLALALSGDQFTLNLTELASRSPG-GSFGLLCYLGFLVGFGVKLPMFPLHTW 246 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A S+ LAG++LKMGGY +RF + + P A AP + L ++ I+Y +L Sbjct: 247 LPDAHGEANAPVSMLLAGVLLKMGGYALLRFNVQMLPDAHLTLAPALVILGIVNIVYGAL 306 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 + Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF GV Y Sbjct: 307 NAFAQDNVKRRIACSSVSHMGFVLLGIGAVDALGISGAMLQMVSHGLIAAAMFFFTGVFY 366 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---- 407 +R T I GGL +P + ++A++ LPG SGFI E V + + Sbjct: 367 ERTKTLSIPNMGGLAKALPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEGFTSL 426 Query: 408 ---TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 +LA+ G+VL+ +Y L + R+V FG + + ++D+ RE + + V T+ Sbjct: 427 FRAITVLLAAIGLVLTPIYLLSMCRRVFFG-PRIPALASVEDMRPRELVIGMSLLVPTLV 485 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 GI+P D + ++ + Sbjct: 486 IGIWPRIAMDLYEASTDNLATD 507 >gi|145593330|ref|YP_001157627.1| proton-translocating NADH-quinone oxidoreductase, chain M [Salinispora tropica CNB-440] gi|145302667|gb|ABP53249.1| proton-translocating NADH-quinone oxidoreductase, chain M [Salinispora tropica CNB-440] Length = 496 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 258/467 (55%), Gaps = 25/467 (5%) Query: 38 LGISTINFIFSLFVWSVFD-KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 +G +T+ + VW+ ++ + E WI SYHLGVDG+S+ L+ +T + Sbjct: 32 VGAATVELVLVGVVWAGYETPPPGELALAERAAWIPGVGSSYHLGVDGLSLPLMAMTAVV 91 Query: 96 TPFCILSSWKSIQENFREYMIA--FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 C + +++E R + A FL L+S+ +G F + D++LF++FF+ S++ M+ +I Sbjct: 92 FLACAV---YALRERHRPRVQASLFLFLQSVSLGVFAAADLILFFVFFDLSIVGMYAVIA 148 Query: 154 VWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM--CWEKKTSSIIDLYAMSKF---PFSIQ 208 WG +R +A KFFLYTF GS+ +L + + + T + L A + P + Sbjct: 149 GWGHGDRARSALKFFLYTFLGSLALLTGFIGLYVAADPHTFDMPTLTAQNPLEGRPLAGG 208 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 + A A+K P PFHTWLP AH AP GS LAG++LK+G YG +R P+ P Sbjct: 209 AVL-AAILIGLAVKTPTVPFHTWLPPAHTDAPAVGSAVLAGVLLKLGTYGFVRIAAPMLP 267 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI-FSGMKS--- 324 A + +A +I + +++++Y +LV++ QT++K++IAY+SI HMGY+ + + +G+ S Sbjct: 268 QAWRGWAWIIITVGVVSVLYGALVALAQTNLKRMIAYTSINHMGYIVLAVGAAGLVSVDT 327 Query: 325 ------GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 V GA+ QM+SHGL++SALF GV+Y+R T D+ AYGGL P +A V Sbjct: 328 AEPRAVAVTGAVTQMVSHGLITSALFLLAGVLYERAGTYDMHAYGGLAAPAPMFAAFFAV 387 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 +A++GLP SGFI EF V + AV A G++++A L + ++ G + Sbjct: 388 GALASLGLPAFSGFIAEFQVFAGSIATAPVTAV-ALLGILITAALFLRAGQALLTGPTTG 446 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 + DL ER V P+ L++ G+ P P+ D ++++ Sbjct: 447 HA-KGFDDLRATERWSVGPLLALSLLIGVLPRPLLDLVEPAARTVVD 492 >gi|255691146|ref|ZP_05414821.1| NADH dehydrogenase I, M subunit [Bacteroides finegoldii DSM 17565] gi|260623239|gb|EEX46110.1| NADH dehydrogenase I, M subunit [Bacteroides finegoldii DSM 17565] Length = 494 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/479 (32%), Positives = 265/479 (55%), Gaps = 17/479 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 + FLSI +P L +L + G ++ GV + ++ I S+ + ++ RS+ Sbjct: 1 MNFLSIFVLIPLL----MLAGLWAARGIKAIRGVMVTGASALLIASVVLTFMYLGERSAG 56 Query: 63 QMIEYYHWIDYF------CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 E D SY +GVDGIS+ +++L+ + +SW+ +Q +EY + Sbjct: 57 NTAEMLFRADTLWYAPLHISYSVGVDGISVAMLLLSAIIVFTGTFASWR-LQPLTKEYFL 115 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 F +L V G F+S+D+ ++F+E +LIPM+++IGVWG + YAA K L GS Sbjct: 116 WFTLLAMGVFGFFISVDLFTMFMFYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSA 175 Query: 177 FMLFAIVVMCWEK--KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L I+ + + T +++++ + PF+ Q + F F + +FPFHTW P+ Sbjct: 176 FLLIGILGIYFGAGATTMNLLEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPD 235 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 H APTA S+ AG+++K+GGYGC R + L P A+ + + L+ I+++Y + + Sbjct: 236 GHASAPTAVSMLHAGVLMKLGGYGCFRIAMYLMPEAANELSWIFLILTGISVVYGAFSAC 295 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 VQTD+K + AYSS++H G V I ++ GA+ QMLSHGL+++ F +G+IY R Sbjct: 296 VQTDLKYINAYSSVSHCGLVLFAILMLNQTAATGAILQMLSHGLMTALFFALIGMIYGRT 355 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVA 410 HTRD+ GL+ MP +V ++ +AN+GLPG SGFI E + + FQ+++ T+ Sbjct: 356 HTRDVRELAGLMKIMPFLSVCYVIAGLANLGLPGLSGFIAEMTIFVGSFQDNDVFHRTLT 415 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++A +V++A+Y L L K+++G + +L D + ER V + V G+ P Sbjct: 416 IIACSSIVITAVYILRLVGKILYGTCTNKHHLELTDATWDERVAVICLIVCVAGLGMAP 474 >gi|254416383|ref|ZP_05030136.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Microcoleus chthonoplastes PCC 7420] gi|196176821|gb|EDX71832.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Microcoleus chthonoplastes PCC 7420] Length = 494 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 173/475 (36%), Positives = 269/475 (56%), Gaps = 18/475 (3%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS + +P L V+ F ++ + G R V L +++ FI+SL + + F+ +FQ Sbjct: 2 LSALILVPLLTALVVGFLPTNLMAKGARK---VTLIVTSGLFIWSLVLLAQFNPSEINFQ 58 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E WI+ +Y LG+DG+S+ L+VL LT + S + + E R Y L+L Sbjct: 59 FQEQLSWIESIGLTYSLGIDGLSMPLLVLNGLLTAMAVYCSDEEL-ERPRFYYTLILLLN 117 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + V GAFL+ D+LLF++F+E LIP++++I +WGG R YAA KF LYT +L Sbjct: 118 AGVAGAFLAQDLLLFFLFYELELIPLYLLIAIWGGKRRGYAATKFLLYTAASGALVLAVF 177 Query: 183 VVMCWEKKTSS-----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + + +S + +L ++ P + Q + +F IKIP+ PFHTWLP+AHV Sbjct: 178 LGLVFLSGANSFAYGNVQNLASL--LPVARQLVLLGGILIAFGIKIPLVPFHTWLPDAHV 235 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A T S+ LAG++LK+G YG +RF L LFP A AP + ++++++Y + ++ Q Sbjct: 236 EASTPISMLLAGVLLKLGTYGLLRFGLGLFPEAWAIIAPWLAIWAVVSVLYGAFNAIAQR 295 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KK++A+SS+AHMGY+ + + + A+ QM+SHGL+S+ LFF VGV+Y + +R Sbjct: 296 DMKKMVAFSSVAHMGYILLAAAAATSISLVAAVMQMVSHGLISALLFFLVGVVYKKTGSR 355 Query: 358 DIFAYGGLVHN---MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 D+ GL++ +P M++ MA+ G+PG GFI EFLV F +L Sbjct: 356 DLEVLNGLLNRERGLPLIGSFMVLAVMASAGIPGMVGFISEFLVFRGSFPAFPVQTLLCM 415 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G VL+A+Y L L + FG +V L + ER +AVL V FGI P Sbjct: 416 IGTVLTAVYFLILLDRTFFG-RLSAQVINLPRVYWSERIPAIVLAVLIVIFGIQP 469 >gi|313145373|ref|ZP_07807566.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12] gi|313134140|gb|EFR51500.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12] Length = 481 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 155/457 (33%), Positives = 251/457 (54%), Gaps = 13/457 (2%) Query: 25 YLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWID------YFCSYH 78 YL G ++ GV + ST I S+ + ++ R + E D SY Sbjct: 6 YLAKGIKAIRGVMVAGSTALLILSIVLTFLYLGERQAGATAEMLFRADTVWYAPLHISYS 65 Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 +GVDGIS+ +++L+ + +SWK +Q +EY + F +L V G F+S+D+ + Sbjct: 66 VGVDGISVAMLLLSAVIVFTGTFASWK-LQPLTKEYFLWFTLLSMGVFGFFISIDLFTMF 124 Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSIID 196 +F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + T +I++ Sbjct: 125 MFYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIFFGAGGTTMNILE 184 Query: 197 LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 + + PF+ Q + F F + +FPFHTW P+ H APTA S+ AG+++K+GG Sbjct: 185 IARLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKLGG 244 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 YGC R + L P A+ + L+ I+++Y + + VQTD+K + AYSS++H G V Sbjct: 245 YGCFRIAMYLMPEAANELGWIFLILTGISVVYGAFSACVQTDLKYINAYSSVSHCGLVLF 304 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP +V Sbjct: 305 AILMMNQTAATGAVLQMLSHGLMTALFFALIGMIYGRTHTRDVRELSGLMKVMPFLSVCY 364 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQN----SNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ +AN+GLPG SGF+ E + + FQN T+ ++A +V++A+Y L L K++ Sbjct: 365 VIAGLANLGLPGLSGFVAEMTIFVGSFQNFDVFHRTLTIIACSSIVITAVYILRLVGKIL 424 Query: 433 FGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +G + L D + ER V + + G+ P Sbjct: 425 YGTCTNKHHLALTDATWDERFAVICLIICVAGLGMAP 461 >gi|156598510|gb|ABU85513.1| NADH-plastoquinone oxidoreductase subunit 4 [Passiflora biflora] Length = 498 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 155/441 (35%), Positives = 251/441 (56%), Gaps = 22/441 (4%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID+ + LG+DG+SI ++LT F+T L++ + I + R + L + Sbjct: 63 QLAENSKWIDFLDFDWRLGIDGLSIGPILLTGFITTLATLAA-RPITRDSRLFHFLMLGM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML-- 179 S +G F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 122 YSGQVGLFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLMG 181 Query: 180 -FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 I + + + T + A +P S++ +I F +FA+K P+ PFHTWLP+ H + Sbjct: 182 ALGIALYTFNEPTFHF-EKSANQSYPVSLEILFYIGFLVAFAVKSPIIPFHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+L S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSLFSPWLVIVGAIQIIYAALTSSGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI+S G+ GA+ Q++SHG + +ALFF G YDR+H Sbjct: 301 LKKRIAYSSVSHMGFIIIGIYSISDMGLNGAVLQIISHGFIGAALFFLAGTSYDRIHLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV---AVLASF 415 + GG+ MP+ + + ++A++ LPG SGF+ E +V + + +L +F Sbjct: 361 LDEMGGMATLMPKVFTMFSILSLASLALPGMSGFVAELIVFFGIINGHKYLLMPKILITF 420 Query: 416 ----GVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRE----RCMVYPIAVLTVFFG 466 G++L+ +Y L + R++ +G + D RE C++ P+ + G Sbjct: 421 VMAVGMILTPIYLLSMLRQMFYGYKLFDAANSYFFDSGPREFFVSICLLLPV----IGIG 476 Query: 467 IYPVPIRDTFSVPLSSIIENY 487 I+P + +S+I+ NY Sbjct: 477 IFPDFVFSLAVEKVSAILSNY 497 >gi|90655617|gb|ABD96453.1| NADH dehydrogenase I chain 4 [uncultured marine type-A Synechococcus GOM 5D20] Length = 496 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 159/426 (37%), Positives = 248/426 (58%), Gaps = 13/426 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD + Q+IE W+ Y L VDG+S+ LV++ L +SS +SI+ R Sbjct: 51 FDPADAGLQLIEQARWVHAIGLDYALAVDGLSLPLVLMNGVLCLVAAISS-RSIENRPRI 109 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L++ V GAFL+ ++LLF++F+E LIP++++I VWGG+ R YAA KF + T Sbjct: 110 YFALLLLISGAVNGAFLAQNLLLFFLFYELELIPLWLLIAVWGGANRAYAATKFLIVTAV 169 Query: 174 GSIFMLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 + +L + + + + T S+ + A + + Q + A F IKIP+FPFHTW Sbjct: 170 SGVLILASFLGLAFVTGTMDFSLQPIMA-GELGMTAQLVLMGALLIGFGIKIPLFPFHTW 228 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A T SV LAG++LK+G YG +RF L LFP A Q +P + + I+++Y SL Sbjct: 229 LPDAHTEASTPVSVLLAGVLLKLGTYGLLRFCLGLFPEAWQLASPWLAAWAAISVLYGSL 288 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ QTD+K+++AYSS+ HMGYV + + G+ GA+FQM+SHGL+S LF VGV+Y Sbjct: 289 AAIAQTDMKRMVAYSSVGHMGYVLLAAAAATPLGLMGALFQMVSHGLISGVLFLLVGVVY 348 Query: 352 DRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 R TRD+ GL++ +P +M++ MA+ G+PG +GFI EFL+ Q Sbjct: 349 ARTGTRDLNVLRGLLNPQRGLPLTGSLMIIGVMASAGIPGMAGFISEFLIFRGSLQPFPV 408 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFG---VSKCEKVQQ--LKDLSLRERCMVYPIAVLTV 463 +L+ G L+A+Y L L + FG ++ E V L +++RE+ +++ + Sbjct: 409 ATLLSMVGSGLTAVYFLLLVNRAFFGRLAIAPGEVVNPRILDSVAVREQVSAIALSLGVL 468 Query: 464 FFGIYP 469 G+ P Sbjct: 469 ALGLVP 474 >gi|260171810|ref|ZP_05758222.1| NADH dehydrogenase I, chain M [Bacteroides sp. D2] gi|315920122|ref|ZP_07916362.1| NADH dehydrogenase subunit I [Bacteroides sp. D2] gi|313693997|gb|EFS30832.1| NADH dehydrogenase subunit I [Bacteroides sp. D2] Length = 494 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/479 (32%), Positives = 264/479 (55%), Gaps = 17/479 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 + FLSI +P L +L + G ++ GV + ++ I S+ + ++ RS+ Sbjct: 1 MNFLSIFVLIPLL----MLAGLWAARGIKAIRGVMVTGASALLIASVVLTFLYLGERSAG 56 Query: 63 QMIEYYHWIDYF------CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 E D SY +GVDGIS+ +++L+ + +SW+ +Q +EY + Sbjct: 57 NTAEMLFRADTLWYAPLHISYSVGVDGISVAMLLLSAVIVFTGTFASWR-LQPLTKEYFL 115 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 F +L V G F+S+D+ ++F+E +LIPM+++IGVWG + YAA K L GS Sbjct: 116 WFTLLSMGVFGFFISVDLFTMFMFYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSA 175 Query: 177 FMLFAIVVMCWEK--KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L I+ + + T +++++ + PF+ Q + F F + +FPFHTW P+ Sbjct: 176 FLLIGILGIYFGSGATTMNLLEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPD 235 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 H APTA S+ AG+++K+GGYGC R + L P A+ + + L+ I+++Y + + Sbjct: 236 GHASAPTAVSMLHAGVLMKLGGYGCFRIAMYLMPEAANELSWIFLILTGISVVYGAFSAC 295 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 VQTD+K + AYSS++H G V I ++ GA+ QMLSHGL+++ F +G+IY R Sbjct: 296 VQTDLKYINAYSSVSHCGLVLFAILMLNQTAATGAILQMLSHGLMTALFFALIGMIYGRT 355 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VA 410 HTRD+ GL+ MP +V ++ +AN+GLPG SGFI E + + FQN++ + Sbjct: 356 HTRDVRELAGLMKIMPFLSVCYVIAGLANLGLPGLSGFIAEMTIFVGSFQNNDQFHRVLT 415 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++A +V++A+Y L L K+++G + +L D + ER V + V G+ P Sbjct: 416 IIACSSIVITAVYILRLVGKILYGTCTNKHHLELTDATWDERVAVICLIVCVAGLGMAP 474 >gi|90425535|ref|YP_533905.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris BisB18] gi|90107549|gb|ABD89586.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris BisB18] Length = 480 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 154/418 (36%), Positives = 233/418 (55%), Gaps = 11/418 (2%) Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 D GR Q+ W+ F S +L +DG+S LV + L +++SW I+ + + Sbjct: 50 DDGRWLAQV--DLPWVPSFGISINLALDGLSAALVGIAAGLGIIGVMASWHEIKVDSGLF 107 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF-- 172 S IG FLS D+L+F F+EA LIP F++I VWG + AA KF ++ Sbjct: 108 HACLCWTVSATIGVFLSFDLLVFAFFWEAQLIPSFMLIAVWGHGAKESAALKFLIFNAVA 167 Query: 173 -FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 FG + +F + M + T + L + K +Q W+ + F +F +K+ + PFH W Sbjct: 168 GFGLLAGVFGLASMA-DTMTFNAFTLAEL-KLSTPMQVWLLLGFSLAFLVKLSVPPFHAW 225 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH APTAGS+ LAG++LK G YG RF LFP AP L +Y + Sbjct: 226 LPDAHTLAPTAGSILLAGLLLKTGAYGLFRFSPMLFPDGLVVLAPYGIALGAAGALYGGV 285 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V+ QTD K+L+AY+S+AHM V +G+ +G++ + GA +M++H +SALF +G +Y Sbjct: 286 VACGQTDAKRLVAYTSVAHMCIVLMGVAAGVEYALAGAAVEMVAHSFSASALFLLIGALY 345 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R TRD+ GGL + PR+A +F A + LPGT+ F+GE LV++ +FQ S A+ Sbjct: 346 ERTQTRDLRELGGLQQSAPRFAAAFALFCSALLALPGTANFVGEALVVVGIFQVSWPFAL 405 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +A +++S +Y L + V FG + + V +DL RE V +AV TV G+YP Sbjct: 406 VALSTLIVSVVYGTRLLKGVTFGAASPKVV---RDLGWREVATVIALAVGTVLVGLYP 460 >gi|53712154|ref|YP_098146.1| NADH dehydrogenase I chain M [Bacteroides fragilis YCH46] gi|60680338|ref|YP_210482.1| putative NADH-ubiquinone oxidoreductase subunit [Bacteroides fragilis NCTC 9343] gi|253563808|ref|ZP_04841265.1| NADH dehydrogenase subunit I M [Bacteroides sp. 3_2_5] gi|52215019|dbj|BAD47612.1| NADH dehydrogenase I chain M [Bacteroides fragilis YCH46] gi|60491772|emb|CAH06530.1| putative NADH-ubiquinone oxidoreductase subunit [Bacteroides fragilis NCTC 9343] gi|251947584|gb|EES87866.1| NADH dehydrogenase subunit I M [Bacteroides sp. 3_2_5] gi|301161871|emb|CBW21415.1| putative NADH-ubiquinone oxidoreductase subunit [Bacteroides fragilis 638R] Length = 494 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 159/479 (33%), Positives = 260/479 (54%), Gaps = 17/479 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 + FLS+ +P L +L YL ++ GV + ST I S+ + ++ R + Sbjct: 1 MNFLSLFVLIPLL----MLGGLYLAKSIKAIRGVMVAGSTALLILSVVLTFLYLGERQAG 56 Query: 63 QMIEYYHWID------YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 E D +Y +GVDGIS+ +++L+ + +SWK +Q +EY + Sbjct: 57 ATAEMLFRADTVWYAPLHIAYSVGVDGISVAMLLLSAVIVFTGTFASWK-LQPLTKEYFL 115 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 F +L V G F+S+D+ ++F+E +LIPM+++IGVWG + YAA K L GS Sbjct: 116 WFTLLSMGVFGFFISIDLFTMFMFYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSA 175 Query: 177 FMLFAIVVMCWEK--KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L I+ + + T +I+++ + PF+ Q + F F + +FPFHTW P+ Sbjct: 176 FLLIGILGIFFGAGGTTMNILEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPD 235 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 H APTA S+ AG+++K+GGYGC R + L P A+ + L+ I+++Y + + Sbjct: 236 GHASAPTAVSMLHAGVLMKLGGYGCFRIAMYLMPEAANELGWIFLILTGISVVYGAFSAC 295 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 VQTD+K + AYSS++H G V I ++ GA+ QMLSHGL+++ F +G+IY R Sbjct: 296 VQTDLKYINAYSSVSHCGLVLFAILMMNQTAATGAVLQMLSHGLMTALFFALIGMIYGRT 355 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN----SNTVA 410 HTRD+ GL+ MP +V ++ +AN+GLPG SGF+ E + + FQN T+ Sbjct: 356 HTRDVRELNGLMKVMPFLSVCYVIAGLANLGLPGLSGFVAEMTIFVGSFQNFDVFHRTLT 415 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++A +V++A+Y L L K+++G + L D + ER V + + G+ P Sbjct: 416 IIACSSIVITAVYILRLVGKILYGTCTNKHHLALTDATWDERFAVICLIICVAGLGMAP 474 >gi|313126877|ref|YP_004037147.1| NADH dehydrogenase subunit m [Halogeometricum borinquense DSM 11551] gi|312293242|gb|ADQ67702.1| NADH dehydrogenase subunit M [Halogeometricum borinquense DSM 11551] Length = 509 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 260/461 (56%), Gaps = 27/461 (5%) Query: 36 VALGISTINFIFSLFVWSVFDKGRS-----SFQMIEYYHWI---DYFCSYHLGVDGISIL 87 +A +S + + SLF+W+ +D + S + W+ + + +GVDGIS+ Sbjct: 28 LAAALSLLPVVGSLFMWAQYDASGNALLGGSIAFETDFVWLSLGNLDVHWFVGVDGISLP 87 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 L+VLTT LT I+S+W I ++ L +E+ ++G F +LD +++IF+EA L+P Sbjct: 88 LIVLTTILTTLAIVSAWTPIDMRQSQFYGLMLFMEANLLGVFTALDFFVWFIFWEAVLVP 147 Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW---EKKTSSIIDLYAMSKFP 204 M+ +IG+WGG R YAA KFF+YT S+ M + + + + +S + AM+ Sbjct: 148 MYFLIGIWGGPRRKYAAIKFFVYTNIASLVMFIGFIALVFGLGDSVSSMRLPEIAMALRA 207 Query: 205 F-----------SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 +++ ++A F FA+K+P+ P HTWLP+AHV+APT SV LAG++LK Sbjct: 208 NELGGFAGLNAETLKLVAFVAMFFGFAVKVPVAPLHTWLPDAHVEAPTPASVMLAGVLLK 267 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 MG Y +RF + P ++ I +++I++IY +++++ Q D+K+++AYSS++ MGY Sbjct: 268 MGTYALLRFNFTMMPDVAKALVVPIAAIAVISVIYGAILALAQQDLKRIVAYSSVSSMGY 327 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V +G+ + GV GA FQM++HGL+S +F VGVIY+ HTR + G+ MP + Sbjct: 328 VILGLVAYTTYGVGGATFQMIAHGLISGLMFMVVGVIYNTTHTRMVGDMSGMADRMPVAS 387 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV-----LASFGVVLSALYSLWLY 428 + + MGLP +GF GEF + F ++ A+ A FG+V+ A Y L+ Sbjct: 388 GIFVAGAFGYMGLPLMAGFAGEFFIFQGAFASTVHSAMPLFTAAAMFGIVIVAGYLLFAM 447 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++ +FG + + ++ +++ + + +L + G+ P Sbjct: 448 QRTLFGPFRFDGDYEITKAPIQDIAPLAVLLLLVIILGVEP 488 >gi|282896542|ref|ZP_06304562.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Raphidiopsis brookii D9] gi|281198648|gb|EFA73529.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Raphidiopsis brookii D9] Length = 504 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 161/471 (34%), Positives = 256/471 (54%), Gaps = 11/471 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ +LP +G +I R V+L IS + +++ F+ FD Q Sbjct: 2 LSVLIWLPIIGAAIISILPDTIIPRNRIRLVSLTISFVLLLWNAFILVKFDITNPGMQFS 61 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 EY W + +Y LGVDG+SIL+++L + LT I SS ++ + Y + LV Sbjct: 62 EYLPWNETLGLAYQLGVDGLSILMLILNSLLTWIAIYSSSENTERPKLFYSLVLLV-SGG 120 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V GAFL+ ++LLF++F+E LIP +++I +WGG++R YA KF +YT +L + Sbjct: 121 VAGAFLAQNLLLFFLFYEMELIPFYLLISIWGGNKRAYAGMKFLIYTAVSGALILATFLG 180 Query: 185 MCWEKKTSS-IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + W + S +D ++Q + F IKIP+ PFHTWLP+A+V+A Sbjct: 181 IVWLSGSHSFALDAVNTQNLSTTMQIVLLAGIILGFGIKIPLIPFHTWLPDAYVEASAPI 240 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 ++ L GI+ K+G YG +RF LFP A AP + I+ IY ++V++ Q DIK+++ Sbjct: 241 AILLGGILAKLGTYGLLRFGFGLFPQAWNVVAPTLAIWGAISAIYGAVVAISQKDIKRMV 300 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI HMGY+ + SG K + GA+ QM SHGL+ + LF VG+I ++ TR++ Sbjct: 301 AYSSIGHMGYILLATASGTKLALVGAVAQMFSHGLILAILFHLVGIIEGKVGTRELDKLN 360 Query: 364 GL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN--SNTVAVLASFGVV 418 GL + +P + ++++ MA+ G+PG +GFI EF+V F T+ +AS G Sbjct: 361 GLMSPIRGLPIVSALLVLGGMASAGIPGLTGFIAEFIVFQGSFSTFPIPTLLCVASSG-- 418 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+A+Y + L + FG + + E+ +A L +F G+ P Sbjct: 419 LTAVYFVILLNRTCFG-KLNNDLAYYPKVVWAEKIPALVLAGLIIFLGVQP 468 >gi|298384965|ref|ZP_06994524.1| NADH dehydrogenase I, M subunit [Bacteroides sp. 1_1_14] gi|298262109|gb|EFI04974.1| NADH dehydrogenase I, M subunit [Bacteroides sp. 1_1_14] Length = 494 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/400 (35%), Positives = 234/400 (58%), Gaps = 7/400 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 SY +GVDGIS+ +++L+ + +SW+ +Q +EY + F +L V G F+S+D+ Sbjct: 76 SYSVGVDGISVAMLLLSAVIVFTGTFASWR-LQPLTKEYFLWFTLLSMGVFGFFISIDLF 134 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSS 193 ++F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + T + Sbjct: 135 TMFMFYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIYFGSGATTMN 194 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++++ + PF+ Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 195 LLEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 254 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A+ + + L+ I+++Y + + VQTD+K + AYSS++H G Sbjct: 255 LGGYGCFRIAMYLMPEAANELSWIFLILTGISVVYGAFSACVQTDLKYINAYSSVSHCGL 314 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP + Sbjct: 315 VLFAILMLNQTAATGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRELTGLMKVMPFLS 374 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V ++ +AN+GLPG SGFI E + + FQN++ T+ ++A +V++A+Y L L Sbjct: 375 VCYVIAGLANLGLPGLSGFIAEMTIFVGSFQNNDVFHRTLTIIACSSIVITAVYILRLVG 434 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K+++G + L D + ER V + V G+ P Sbjct: 435 KILYGTCTNKHHLALTDATWDERVAVICLIVCVAGLGMAP 474 >gi|237709348|ref|ZP_04539829.1| NADH dehydrogenase subunit I M [Bacteroides sp. 9_1_42FAA] gi|237724581|ref|ZP_04555062.1| NADH dehydrogenase subunit I M [Bacteroides sp. D4] gi|265755023|ref|ZP_06089937.1| NADH dehydrogenase subunit I M [Bacteroides sp. 3_1_33FAA] gi|229437140|gb|EEO47217.1| NADH dehydrogenase subunit I M [Bacteroides dorei 5_1_36/D4] gi|229456733|gb|EEO62454.1| NADH dehydrogenase subunit I M [Bacteroides sp. 9_1_42FAA] gi|263234634|gb|EEZ20213.1| NADH dehydrogenase subunit I M [Bacteroides sp. 3_1_33FAA] Length = 493 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 147/416 (35%), Positives = 238/416 (57%), Gaps = 8/416 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L++ + +SWK +Q +EY + F +L V G F+S D+ Sbjct: 77 YSVGVDGISVAMLLLSSIIVFTGTFASWK-LQPLTKEYFMWFTLLSVGVFGFFVSTDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 ++F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + ++ + Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIFYGAGGETM-N 194 Query: 197 LYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L ++K P +Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 195 LLEIAKLHIPHEMQRIFFPLIFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 254 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P + + V L+ I+++Y + ++VQTD+K + AYSS++H G V Sbjct: 255 GGYGCFRVAMYLMPEGAAMWGDVFLILTTISVVYGAFSAVVQTDLKYINAYSSVSHCGLV 314 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GGL+ MP AV Sbjct: 315 LFALLMMTRTSCTGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRLMGGLMKIMPFLAV 374 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGF+ E V + FQN +T ++A+ +V++A+Y L + K Sbjct: 375 GYVIAGLANLGLPGLSGFVAEMTVFVGSFQNDDTFHRVCTLVATTSIVITAVYILRVVGK 434 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 +++G + +L D + ER V + G+ P I D S + II Sbjct: 435 ILYGKVLNPEHLKLTDATWDERVAVICLIACVAGLGLAPFWISDLISNSVEPIISQ 490 >gi|212693819|ref|ZP_03301947.1| hypothetical protein BACDOR_03340 [Bacteroides dorei DSM 17855] gi|212663708|gb|EEB24282.1| hypothetical protein BACDOR_03340 [Bacteroides dorei DSM 17855] Length = 493 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 147/416 (35%), Positives = 238/416 (57%), Gaps = 8/416 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L++ + +SWK +Q +EY + F +L V G F+S D+ Sbjct: 77 YSVGVDGISVAMLLLSSIIVFTGTFASWK-LQPLTKEYFMWFTLLSVGVFGFFVSTDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 ++F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + ++ + Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIFYGAGGETM-N 194 Query: 197 LYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L ++K P +Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 195 LLEIAKLHIPHEMQRIFFPLIFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 254 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P + + V L+ I+++Y + ++VQTD+K + AYSS++H G V Sbjct: 255 GGYGCFRVAMYLMPEGAAMWGDVFLILTTISVVYGAFSAVVQTDLKYINAYSSVSHCGLV 314 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GGL+ MP AV Sbjct: 315 LFALLMMTRTSCTGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRLMGGLMKIMPFLAV 374 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGF+ E V + FQN +T ++A+ +V++A+Y L + K Sbjct: 375 GYVIAGLANLGLPGLSGFVAEMTVFVGSFQNDDTFHRVCTLVATTSIVITAVYILRVVGK 434 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 +++G + +L D + ER V + G+ P I D S + II Sbjct: 435 ILYGKVLNPEHLKLTDATWDERVAVICLIACVAGLGLAPFWISDLISNSVEPIISQ 490 >gi|156598358|gb|ABU85439.1| NADH-plastoquinone oxidoreductase subunit 4 [Musa acuminata] Length = 497 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 164/496 (33%), Positives = 267/496 (53%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP I F + G + F A+ I ++ + + +V+ F Sbjct: 4 PWLTILVVLPISVGSSIFFLPH--KGNKMFRWYAICICSLELLLTTYVFCYHFQLDDPLT 61 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+SI ++LT F+T L++W + N R + L + Sbjct: 62 QLEEDLKWIDVFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 120 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 YSGQIGLFSSRDLLLFFMLWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 180 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +D ++ +P +++ ++ F ++A+K P+ P HTWLP+ H +A Sbjct: 181 VLGMGLYGPNEPTLDFSKLTNQSYPVALEIILYFGFLIAYAVKSPIIPLHTWLPDTHGEA 240 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++ Sbjct: 241 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVGTIQIIYAASTSLGQRNL 300 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG+ IGI S G+ GA+ Q+LSHG + +ALFF G DR+ + Sbjct: 301 KKRIAYSSVSHMGFTIIGIGSITGMGLNGAILQILSHGFIGAALFFLAGTSCDRIRLVYL 360 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + Sbjct: 361 DEMGGVSIPMPKLFTMFSSFSMASLALPGMSGFVAELLVFFGIITSPKYLLMPKMLITFV 420 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G D RE + I + + GIYP Sbjct: 421 MAIGMILTPIYLLSMLRQMFYGYKLFNVPNSNFADSGPRELFVSICIFLPVIGIGIYPDF 480 Query: 472 IRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 481 VLSLSVDRVQAILSNY 496 >gi|308185020|ref|YP_003929153.1| NADH dehydrogenase subunit M [Helicobacter pylori SJM180] gi|308060940|gb|ADO02836.1| NADH dehydrogenase subunit M [Helicobacter pylori SJM180] Length = 512 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLILLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + +YH+GVDGI++ L++L + +L S ++E +++ I L+LE + Sbjct: 64 EMKELVYQIGVNYHVGVDGIALFLLLLNAIV----VLLSVIYVKERRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNHKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGYYYASNYGMMSFDILDWYQLN-FSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYTQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGIIVMGLFLLAGILEERASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKNVFFGNLKTGNNQISVFEDLNARE 453 >gi|265765485|ref|ZP_06093760.1| NADH dehydrogenase subunit I M [Bacteroides sp. 2_1_16] gi|263254869|gb|EEZ26303.1| NADH dehydrogenase subunit I M [Bacteroides sp. 2_1_16] Length = 494 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 159/479 (33%), Positives = 260/479 (54%), Gaps = 17/479 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 + FLS+ +P L +L YL ++ GV + ST I S+ + ++ R + Sbjct: 1 MNFLSLFVLIPLL----MLGGLYLAKSIKAIRGVMVAGSTALLILSVVLTFLYLGERQAG 56 Query: 63 QMIEYYHWID------YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 E D +Y +GVDGIS+ +++L+ + +SWK +Q +EY + Sbjct: 57 ATAEMLFRADTVWYAPLHIAYSVGVDGISVAMLLLSAVIVFTGTFASWK-LQPLTKEYFL 115 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 F +L V G F+S+D+ ++F+E +LIPM+++IGVWG + YAA K L GS Sbjct: 116 WFTLLSMGVFGFFISIDLFTMFMFYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSA 175 Query: 177 FMLFAIVVMCWEK--KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L I+ + + T +I+++ + PF+ Q + F F + +FPFHTW P+ Sbjct: 176 FLLIGILGIFFGAGGATMNILEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPD 235 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 H APTA S+ AG+++K+GGYGC R + L P A+ + L+ I+++Y + + Sbjct: 236 GHASAPTAVSMLHAGVLMKLGGYGCFRIAMYLMPEAANELGWIFLILTGISVVYGAFSAC 295 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 VQTD+K + AYSS++H G V I ++ GA+ QMLSHGL+++ F +G+IY R Sbjct: 296 VQTDLKYINAYSSVSHCGLVLFAILMMNQTAATGAVLQMLSHGLMTALFFALIGMIYGRT 355 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN----SNTVA 410 HTRD+ GL+ MP +V ++ +AN+GLPG SGF+ E + + FQN T+ Sbjct: 356 HTRDVRELNGLMKVMPFLSVCYVIAGLANLGLPGLSGFVAEMTIFVGSFQNFDVFHRTLT 415 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++A +V++A+Y L L K+++G + L D + ER V + + G+ P Sbjct: 416 IIACSSIVITAVYILRLVGKILYGTCTNKHHLALTDATWDERFAVICLIICVAGLGMAP 474 >gi|160886840|ref|ZP_02067843.1| hypothetical protein BACOVA_04854 [Bacteroides ovatus ATCC 8483] gi|156107251|gb|EDO08996.1| hypothetical protein BACOVA_04854 [Bacteroides ovatus ATCC 8483] Length = 481 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 142/400 (35%), Positives = 234/400 (58%), Gaps = 7/400 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 SY +GVDGIS+ +++L+ + +SW+ +Q +EY + F +L V G F+S+D+ Sbjct: 63 SYSVGVDGISVAMLLLSAVIVFTGTFASWR-LQPLTKEYFLWFTLLSMGVFGFFISVDLF 121 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSS 193 ++F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + T + Sbjct: 122 TMFMFYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIYFGSGATTMN 181 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++++ + PF+ Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 182 LLEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 241 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A+ + + L+ I+++Y + + VQTD+K + AYSS++H G Sbjct: 242 LGGYGCFRIAMYLMPEAANELSWIFLILTGISVVYGAFSACVQTDLKYINAYSSVSHCGL 301 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP + Sbjct: 302 VLFAILMLNQTAATGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRELAGLMKVMPFLS 361 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYR 429 V ++ +AN+GLPG SGFI E + + FQN++ + ++A +V++A+Y L L Sbjct: 362 VCYVIAGLANLGLPGLSGFIAEMTIFVGSFQNNDQFHRVLTIIACSSIVITAVYILRLVG 421 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K+++G + +L D + ER V + V G+ P Sbjct: 422 KILYGTCTNKHHLELTDATWDERVAVICLIVCVAGLGMAP 461 >gi|90655460|gb|ABD96300.1| NADH dehydrogenase I chain 4 [uncultured marine type-A Synechococcus GOM 3O6] Length = 496 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 158/409 (38%), Positives = 241/409 (58%), Gaps = 13/409 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD + Q++E+ W+ Y L VDG+S+ LV++ L ++S +SI R Sbjct: 51 FDPADAGLQLVEHARWVHAIGLDYALAVDGLSLPLVLMNGVLCLVAAIAS-RSIDNRPRI 109 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV+ V GAFL+ ++LLF++F+E LIP++++I VWGG+ R YAA KF + T Sbjct: 110 YFALLLVISGAVNGAFLAQNLLLFFLFYELELIPLWLLIAVWGGANRAYAATKFLIVTAV 169 Query: 174 GSIFMLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 + +L A + + + T S+ + A + + Q + A F IKIP+FPFHTW Sbjct: 170 SGVLILAAFLGLAFVSGTMDFSLQPIMA-GELGMTAQLVLMGALLIGFGIKIPLFPFHTW 228 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A T SV LAG++LK+G YG +RF L LFP A Q +P + + I+++Y SL Sbjct: 229 LPDAHTEASTPVSVLLAGVLLKLGTYGLLRFCLGLFPEAWQLASPWLAAWAAISVLYGSL 288 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ QTD+K+++AYSS+ HMGYV + + G+ GA+FQM+SHGL+S LF VGV+Y Sbjct: 289 AAIAQTDMKRMVAYSSVGHMGYVLLAAAAATPLGLMGALFQMISHGLISGVLFLLVGVVY 348 Query: 352 DRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 R TRD+ GL++ +P +M++ MA+ G+PG +GFI EFL+ Q Sbjct: 349 ARTGTRDLNVLRGLLNPQRGLPLTGSLMIIGVMASAGIPGMAGFISEFLIFRGSLQPFPI 408 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFG---VSKCEKVQQ--LKDLSLRER 452 +L+ G L+A+Y L L + FG ++ E V L ++LRE+ Sbjct: 409 ATLLSMVGSGLTAVYFLLLVNRAFFGRLAIAPGEVVNPRILDRVALREQ 457 >gi|282891838|ref|ZP_06300318.1| hypothetical protein pah_c198o028 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498271|gb|EFB40610.1| hypothetical protein pah_c198o028 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 479 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 142/405 (35%), Positives = 234/405 (57%), Gaps = 14/405 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++L VD +S+L + LT + P ILS+W ++ R + L+L+ ++IG F + D+ Sbjct: 61 EFYLHVDSLSLLFLYLTAIIIPIAILSAWDALSFP-RTFYALVLILQGLLIGFFTARDLA 119 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI- 194 LF IF+E LIP++ II +WGG++R AA KF +Y GS+ M+ A++ + + TS + Sbjct: 120 LFTIFWEGMLIPLYFIINLWGGAQRQSAALKFLIYMIAGSVLMVLAVLALYFSSATSGMG 179 Query: 195 -IDLYAMSKFPFSIQY--WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 +L A++K I Y W+ F +F++K P+FPFH WLP+A+ QA T G++ L+ ++ Sbjct: 180 TFNLDALAKITSHISYTPWLCAVFLLAFSVKTPLFPFHAWLPDAYCQASTPGTILLSSLL 239 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 K G YG +R LFPL Q + P + ++ + Y L + Q D K+LIAYSS++H+ Sbjct: 240 SKAGIYGILRISYGLFPLIMQKWNPWLLGFAIAGVFYGGLAAWRQKDFKRLIAYSSLSHV 299 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 ++ G+F ++ GA+ Q L+HGL + LF +G + +RL T + GL P Sbjct: 300 NFILAGLFIWNQASQSGAILQALNHGLTIAGLFLVIGWLEERLGTTSMLETSGLAKYFPH 359 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + M+F ++++ LPGT+ FIGE L++ +F + +A V+LS +Y L +KV Sbjct: 360 LCWITMIFVLSSVALPGTNNFIGELLILFGLFSKNPWLAGFLGLTVILSVIYMLRFMQKV 419 Query: 432 VFGVSKCEKVQQLK----DLSLRERCMVYPIAVLTVFFGIYPVPI 472 F E QLK D+ +E +V+P+ L ++ G+YP P+ Sbjct: 420 YF-----ENPTQLKQIWSDVRGKEFMIVFPLIALILWIGLYPEPV 459 >gi|257387973|ref|YP_003177746.1| proton-translocating NADH-quinone oxidoreductase, chain M [Halomicrobium mukohataei DSM 12286] gi|257170280|gb|ACV48039.1| proton-translocating NADH-quinone oxidoreductase, chain M [Halomicrobium mukohataei DSM 12286] Length = 522 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 152/422 (36%), Positives = 234/422 (55%), Gaps = 40/422 (9%) Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q I++ Y Y +G+DG+S+ L+ LT LT ++SSW I E ++ L++E Sbjct: 69 QTIDWIELGGYTIQYSVGLDGVSMPLLALTGILTTLALVSSWTPIDERQSQFYGLMLLME 128 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML--- 179 +IG F +LD +++F+E LIPM+++IGVWGG R YAA KFF+YT S+ M Sbjct: 129 VSLIGVFSALDFFFWFVFWEGVLIPMYLLIGVWGGPRRKYAAIKFFVYTNVASLVMFVGF 188 Query: 180 FAIV--------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF---FCSFAIKIPMFPF 228 FA+V + + T +++ S ++ +AF F FA+K+P+FP Sbjct: 189 FALVFSLGDSIATLGLPEITQALVAGEMGSLAGIAVADLKLLAFVLMFVGFAVKVPVFPL 248 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRF------------LLPLFPLASQYFAP 276 HTWLP+AHV+APT SV LAG++LKMG Y +RF +L + P+A Sbjct: 249 HTWLPDAHVEAPTPVSVMLAGVLLKMGTYALLRFNFTMLSDVATGSVLAIMPVA------ 302 Query: 277 VIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSH 336 I + + ++IY +L+++ Q D+K+++AYSSI+ MGYV +G+ + G+ GA FQM+SH Sbjct: 303 -IAVIGVFSVIYGALLALAQRDLKRIVAYSSISSMGYVILGLVAFTPHGMGGATFQMISH 361 Query: 337 GLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEF 396 GL+S +F VGVIY+ HTR + GL MP + + MGLP SGF E Sbjct: 362 GLISGLMFMAVGVIYNETHTRMVGDMSGLADRMPWTVGIFVSAAFGYMGLPLMSGFAAEV 421 Query: 397 LVIMSVFQNSNTVAVLAS-------FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 + + F ++T+ LA FG+V+ A Y LW ++ +FG + E +L + Sbjct: 422 FIFLGSFGATDTLGTLAPVLTSIAMFGIVIVAGYLLWAMQRTLFGGYELETDYELDGAAF 481 Query: 450 RE 451 + Sbjct: 482 HD 483 >gi|34500964|ref|NP_904149.1| NADH dehydrogenase subunit 4 [Amborella trichopoda] Length = 500 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 161/498 (32%), Positives = 270/498 (54%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P+L+ + LP ILF G ++ + + + + + +F ++ F Sbjct: 3 NFPWLTAILLLPISAGSSILFIPQRGNKAVRWYTICICLLELLLMTYVFYYN-FQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E +WI+ F + LG+DG+SI ++LT F+T ++W + N R + L Sbjct: 62 IQLEEDCNWINLFDFHWRLGIDGLSIGPILLTGFITTLATSAAWP-VTRNSRLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLI 180 Query: 181 AIVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ M +++ A +P ++ + F ++A K P+ P HTWLP+ H + Sbjct: 181 GVLGMGLYSSNQPMLNFETSANQSYPVGLEILFYFGFLIAYAAKPPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S+ Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPWLVIVGTLQIIYAASTSLGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG IGI S + + GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGSTIIGIGSMTDTALNGAILQIISHGFIGAALFFLAGTSYDRIRFLY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + +F+MA++ PG SGF+ EFLV + + + + V Sbjct: 361 LDEMGGIAIPMPKIFTMFSIFSMASLASPGMSGFVAEFLVFLGIITSPKYLFIPKILITV 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V D RE ++ I + + GIYP Sbjct: 421 VMAIGMILTPIYLLSMSRQMFYGY-KLFNVPNSYFVDSGPREIFILISILLPVMGIGIYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 480 DFVLSLSVDKVEAILANY 497 >gi|150004305|ref|YP_001299049.1| NADH dehydrogenase I chain M [Bacteroides vulgatus ATCC 8482] gi|254883420|ref|ZP_05256130.1| NADH dehydrogenase subunit I M [Bacteroides sp. 4_3_47FAA] gi|294776884|ref|ZP_06742347.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides vulgatus PC510] gi|319644240|ref|ZP_07998753.1| NADH dehydrogenase subunit I M [Bacteroides sp. 3_1_40A] gi|149932729|gb|ABR39427.1| NADH dehydrogenase I chain M [Bacteroides vulgatus ATCC 8482] gi|254836213|gb|EET16522.1| NADH dehydrogenase subunit I M [Bacteroides sp. 4_3_47FAA] gi|294449360|gb|EFG17897.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides vulgatus PC510] gi|317384231|gb|EFV65203.1| NADH dehydrogenase subunit I M [Bacteroides sp. 3_1_40A] Length = 493 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 147/416 (35%), Positives = 238/416 (57%), Gaps = 8/416 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L++ + +SWK +Q +EY + F +L V G F+S D+ Sbjct: 77 YSVGVDGISVAMLLLSSIIVFTGTFASWK-LQPLTKEYFMWFTLLSVGVFGFFVSTDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 ++F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + ++ + Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIFYGAGGETM-N 194 Query: 197 LYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L ++K P +Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 195 LLEIAKLHIPHEMQRIFFPLIFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 254 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P + + V L+ I+++Y + ++VQTD+K + AYSS++H G V Sbjct: 255 GGYGCFRVAMYLMPEGAAMWGDVFLILTTISVVYGAFSAVVQTDLKYINAYSSVSHCGLV 314 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GGL+ MP AV Sbjct: 315 LFALLMMTRTSCTGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRLMGGLMKIMPFLAV 374 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGF+ E V + FQN +T ++A+ +V++A+Y L + K Sbjct: 375 GYVIAGLANLGLPGLSGFVAEMTVFVGSFQNDDTFHRVCTLVATTSIVITAVYILRVVGK 434 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 +++G + +L D + ER V + G+ P I D S + II Sbjct: 435 ILYGKVLNPEHLKLTDATWDERVAVICLIACVAGLGMAPFWISDLISNSVEPIISQ 490 >gi|78185173|ref|YP_377608.1| proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus sp. CC9902] gi|78169467|gb|ABB26564.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus sp. CC9902] Length = 496 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 160/425 (37%), Positives = 244/425 (57%), Gaps = 11/425 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD ++ Q++E W+ Y L VDG+S+ LV++ L ++S +SI R Sbjct: 51 FDPTDAALQLVEQARWVHSIGLDYALAVDGLSLPLVLMNAVLCLVAAVAS-RSIDNRPRI 109 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV+ V GAFLS ++LLF++F+E LIP++++I VWGG+ R YAA KF + T Sbjct: 110 YFALLLVISGAVNGAFLSQNLLLFFLFYELELIPLWLLIAVWGGANRSYAATKFLIVTAV 169 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 + +L A + + + T +S + Q+ + A F IKIP+FPFHTWL Sbjct: 170 SGMLILGAFLGLAFVTGTMDFSLRPILSGELGLKAQFLLMGALLIGFGIKIPLFPFHTWL 229 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH +A T SV LAG++LK+G YG +RF L LFP A Q AP + + I+++Y SL Sbjct: 230 PDAHTEASTPVSVLLAGVLLKLGTYGLLRFCLGLFPEAWQLAAPWLAAWAAISVLYGSLA 289 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ QTD+K+++AYSS+ HMGYV + + G+ GA+FQM+SHGL+S LF VGV+Y Sbjct: 290 AIAQTDMKRMVAYSSVGHMGYVLLAAAAATPLGLMGALFQMISHGLISGVLFLLVGVVYA 349 Query: 353 RLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 R TRD+ GL++ +P +M++ MA+ G+PG +GFI EFL+ Q Sbjct: 350 RTGTRDLNVLRGLLNPERGLPLTGSLMIIGVMASAGIPGMAGFISEFLIFRGSLQPFPVA 409 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGV-----SKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 +L+ G L+A+Y L L + FG + + L +SLRE+ +++ + Sbjct: 410 TLLSMVGSGLTAVYFLLLVNRAFFGRLAIAPGEVANPRVLDRVSLREQVPAIALSLGVLA 469 Query: 465 FGIYP 469 G+ P Sbjct: 470 LGLAP 474 >gi|68052627|sp|Q70XV2|NU4C_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|34915839|emb|CAD47815.3| ndhD [Amborella trichopoda] Length = 500 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 161/498 (32%), Positives = 270/498 (54%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P+L+ + LP ILF G ++ + + + + + +F ++ F Sbjct: 3 NFPWLTAILLLPISAGSSILFIPQRGNKAVRWYTICICLLELLLMTYVFYYN-FQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E +WI+ F + LG+DG+SI ++LT F+T ++W + N R + L Sbjct: 62 IQLEEDCNWINLFDFHWRLGIDGLSIGPILLTGFITTLATSAAWP-VTRNSRLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLI 180 Query: 181 AIVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ M +++ A +P ++ + F ++A K P+ P HTWLP+ H + Sbjct: 181 GVLGMGLYSSNQPMLNFETSANQSYPVGLEILFYFGFLIAYAAKPPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S+ Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPWLVIVGTLQIIYAASTSLGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG IGI S + + GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGSTIIGIGSMTDTALNGAILQIISHGFIGAALFFLAGTSYDRIRFLY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + +F+MA++ PG SGF+ EFLV + + + + V Sbjct: 361 LDEMGGIAIPMPKIFTMFSIFSMASLASPGMSGFVAEFLVFLGIITSPKYLFIPKILITV 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V D RE ++ I + + GIYP Sbjct: 421 VMAIGMILTPIYLLSMSRQMFYGY-KLFNVPNSYFVDSGPREIFILISILLPVMGIGIYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 480 DFVLSLSVDKVEAILANY 497 >gi|113474232|ref|YP_720293.1| NAD(P)H-quinone oxidoreductase subunit D4 [Trichodesmium erythraeum IMS101] gi|110165280|gb|ABG49820.1| proton-translocating NADH-quinone oxidoreductase, chain M [Trichodesmium erythraeum IMS101] Length = 506 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 175/472 (37%), Positives = 267/472 (56%), Gaps = 14/472 (2%) Query: 6 LSIVTFLPFLGVFVILF-SSYLG--CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 L+ + +P +G +I F SYL R+ +AL ++ I+ ++SL + + F+ + Sbjct: 2 LNSLILVPLIGAGIIGFWPSYLSPKLARQ----LALIVAIISLLWSLVLLTQFNTQDPNQ 57 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q + WID +Y LG+DG+S+ LVVL LT I ++ +SI R Y L+L Sbjct: 58 QFVVMVPWIDSLGLNYSLGIDGLSLPLVVLNGILTTIAIYATDESINRP-RFYYSLILLL 116 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 V GAFL+ D+LLF++F+E LIP++++I +WGG +R YA+ KF +YT I +L Sbjct: 117 ALSVFGAFLAQDLLLFFLFYELELIPLYLLIAIWGGLKRGYASTKFLIYTAISGILILVG 176 Query: 182 IVVMCWEKKTSSII-DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + W +S+ D + P Q + A F IKIP+ PFHTWLP+AHV+A Sbjct: 177 FLGVVWLSGSSNFAYDQAVVHTLPLGTQLLLLGAIVVGFGIKIPLVPFHTWLPDAHVEAS 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T SV LAG++LK+G YG +RF L +FP A +P + +++++IY SL ++ Q D+K Sbjct: 237 TPVSVLLAGVLLKLGTYGLLRFGLNMFPEAWADVSPWLAVWAVVSVIYGSLNAIAQKDMK 296 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K++AYSS+ HMGY+ + + + G +FQM+SHGL+S LF VG++Y + TRDI Sbjct: 297 KMVAYSSVGHMGYILLASAAATPLSILGTVFQMISHGLISGLLFLLVGIVYKKAGTRDID 356 Query: 361 AYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 GL++ +P +M++ MA+ G+PG GFI EFLV F +L G Sbjct: 357 LLRGLLNPEQGLPMVGSLMILGVMASAGIPGMVGFISEFLVFRGSFNAFRIPTLLCMIGT 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L++ Y L L +V FG E V L + +R +AV+ V GI P Sbjct: 417 GLTSAYFLLLINRVFFG-RLSETVINLPPVKWSDRIPAIVLAVMIVVLGIQP 467 >gi|300727281|ref|ZP_07060697.1| NADH dehydrogenase I, m subunit [Prevotella bryantii B14] gi|299775519|gb|EFI72113.1| NADH dehydrogenase I, m subunit [Prevotella bryantii B14] Length = 501 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 141/417 (33%), Positives = 240/417 (57%), Gaps = 7/417 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 +Y +GVDGIS+++++L+ + +SW+ +Q +EY + F +L S V G F+S DM Sbjct: 76 AYSVGVDGISVVMILLSAIIVFTGTFASWQ-LQPMKKEYFLWFTLLSSGVFGFFISTDMF 134 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + Y+A K L GS ++F I+ + + T Sbjct: 135 TMFMFYEVALIPMYLLIGVWGTGPKEYSAMKLTLMLMGGSGLLIFGILGIYYFSGATTME 194 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + ++ AM+ P IQ + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 195 VTEIAAMNNIPVHIQKVFFPFLFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 254 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A+ + L+ +++Y +L + VQTD+K + AYSS++H G Sbjct: 255 LGGYGCFRIAMYLLPAAAHELGWIFLILTTCSVVYGALSACVQTDLKYINAYSSVSHCGM 314 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F C+G+IY R TRD+ GGL+ +P + Sbjct: 315 VLFALCMMTQTAITGAVLQMLSHGLMTALFFACIGMIYHRAGTRDVRKLGGLMKIIPFLS 374 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V ++ +AN+GLPG SGF+ E + + FQN + ++A +V++A+Y L + Sbjct: 375 VSYVIAGLANLGLPGFSGFVAEMTIFVGAFQNGDMFHRVCTIIACTSIVVTAVYILRVVG 434 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 K++F + +L D + ER + + G+ P+ + S ++ +IE+ Sbjct: 435 KILFQKVPNPEFYKLHDATWDERLAIAGLIFCVAGLGMAPLWANEIISDAVAPLIEH 491 >gi|330850793|ref|YP_004376471.1| NADH dehydrogenase subunit 4 [Olea europaea subsp. europaea] gi|291059304|gb|ADD72140.1| NADH-plastoquinone oxidoreductase subunit 4 [Olea europaea] gi|328795483|emb|CBR30365.1| NADH dehydrogenase subunit 4 [Olea europaea subsp. europaea] Length = 500 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 149/443 (33%), Positives = 258/443 (58%), Gaps = 12/443 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ LP +I F + G ++ + + I + F + F G Sbjct: 3 HFPWLTIIVILPISAGSLIFFLPHRGNRVIRWYTICICILELLITTYAFCYH-FQSGDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WID+F + LG+DG+SI ++LT F+T L++ + + + R + L Sbjct: 62 IQLVEDYKWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 121 MYSGQIGLFSCRDLLLFFLMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + +++ A +P +++ +I FF +FA+K+P+ P HTWLP+ H + Sbjct: 181 GVLGIGLYGSNEPTLNLEILANQSYPVALEIIFYIGFFITFAVKLPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S+ Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLIIVGAMQIIYAASTSLGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGIGSITDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 361 LDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGLITSQKYLLMPKILITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFG 434 + + G++L+ +YSL + R++ +G Sbjct: 421 VMAIGMILTPIYSLSMSRQMFYG 443 >gi|240272799|gb|EER36350.1| NADH dehydrogenase subunit 4 [Ajellomyces capsulatus H143] Length = 396 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 162/393 (41%), Positives = 246/393 (62%), Gaps = 4/393 (1%) Query: 95 LTPFCILSSWKSIQE-NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 +TP +S+ +SI E N ++I L+LE++++G FL+LD+LLFYIFFE+ L P+F++IG Sbjct: 2 ITPIACISNGESIDEKNVLSFVIIILLLEALLLGGFLALDLLLFYIFFESILPPLFLLIG 61 Query: 154 VWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 ++G S ++ A++ FLYT GS+FML +I+ M T+ D + + F + Q +++ Sbjct: 62 LFGSSNKVRASFYLFLYTLLGSLFMLLSIITMSSIMGTTDF-DALSKANFNYITQLFLFY 120 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 F SFA+K P +TWL AHV++P AGS+ LAGI+LK+ YG R +LPL P AS Sbjct: 121 GIFISFAVKTPTIFLNTWLLKAHVESPLAGSILLAGIVLKLSLYGIFRLILPLLPKASIN 180 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 + +I+ + +I IIYAS ++ DIK+LIAYSS++H +G FS G+EGA+ Sbjct: 181 YTYIIYVIGVITIIYASFSTLRTIDIKELIAYSSVSHAAVYLLGAFSNSIQGIEGAISLG 240 Query: 334 LSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 L+HG VSS LF CV GV+YDR TR I Y GL MP ++++ + ++ N G P T F Sbjct: 241 LAHGFVSSGLFICVGGVLYDRSSTRLITYYRGLAQLMPIFSILFYILSLGNCGAPLTLNF 300 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRE 451 IGEF+ + F+ + +LAS +V SA Y++++Y ++ FG + L DL+ RE Sbjct: 301 IGEFMSLYGTFERVPFLGLLASSSIVFSAAYTIFMYNRIAFGGIFSSFFFKYLFDLNKRE 360 Query: 452 RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 ++ + + TV FG+YP PI D +SS+I Sbjct: 361 FVLLTCLVIFTVLFGVYPAPILDGLHYSVSSLI 393 >gi|261839990|gb|ACX99755.1| NADH dehydrogenase subunit M [Helicobacter pylori 52] Length = 512 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 264/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLVLLLWHGFDVQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E I +YH+GVDGI++ L++L + +L S ++E +++ I L+LE + Sbjct: 64 EMKELIYQIGVNYHVGVDGIALFLLLLNAIV----VLLSVIYVKERRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGYYYASNYGMMSFDILDWYQLN-FSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I +L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPDLSEIYLTPIAIAALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNIEGISGAVFMMFAHGVIVMGLFLLAGILEERASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++ ++ Sbjct: 359 IARFGSVAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIGGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAIYMLTSYKDVFFGNLKTGNNQISVFEDLNARE 453 >gi|262408332|ref|ZP_06084879.1| NADH dehydrogenase subunit I [Bacteroides sp. 2_1_22] gi|262353884|gb|EEZ02977.1| NADH dehydrogenase subunit I [Bacteroides sp. 2_1_22] Length = 494 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 158/479 (32%), Positives = 264/479 (55%), Gaps = 17/479 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 + FLSI +P L +L + G ++ GV + ++ I S+ + ++ RS+ Sbjct: 1 MNFLSIFVLIPLL----MLAGLWAARGIKAIRGVMVTGASALLIASVVLTFLYLGERSAG 56 Query: 63 QMIEYYHWIDYF------CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 E D SY +GVDGIS+ +++L+ + +SW+ +Q +EY + Sbjct: 57 NTAEMLFRADTLWYAPLHISYSVGVDGISVAMLLLSAVIVFTGTFASWR-LQPLTKEYFL 115 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 F +L V G F+S+D+ ++ +E +LIPM+++IGVWG + YAA K L GS Sbjct: 116 WFTLLSMGVFGFFISVDLFTMFMSYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSA 175 Query: 177 FMLFAIVVMCWEK--KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L I+ + + T +++++ + PF+ Q + F F + +FPFHTW P+ Sbjct: 176 FLLIGILGIYFGSGATTMNLLEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPD 235 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 H APTA S+ AG+++K+GGYGC R + L P A+ + + L+ I+++Y + + Sbjct: 236 GHASAPTAVSMLHAGVLMKLGGYGCFRIAMYLMPEAANELSWIFLILTGISVVYGAFSAC 295 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 VQTD+K + AYSS++H G V I ++ GA+ QMLSHGL+++ F +G+IY R Sbjct: 296 VQTDLKYINAYSSVSHCGLVLFAILMLNQTAATGAILQMLSHGLMTALFFALIGMIYGRT 355 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVA 410 HTRD+ GL+ MP +V ++ +AN+GLPG SGFI E + + FQN++ T+ Sbjct: 356 HTRDVRELAGLMKIMPFLSVCYVIAGLANLGLPGLSGFIAEMTIFVGSFQNNDVFHRTLT 415 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++A +V++A+Y L L K+++G + +L D + ER V + V G+ P Sbjct: 416 IIACSSIVITAVYILRLVGKILYGTCTNKHHLELTDATWDERVAVICLIVCVAGLGMAP 474 >gi|197107602|gb|ACH42381.1| NADH dehydrogenase subunit 4 [Ralfsia fungiformis] Length = 246 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 130/246 (52%), Positives = 182/246 (73%), Gaps = 2/246 (0%) Query: 86 ILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASL 145 +L VVLTT + P C+L+SW + + + Y+I+FL +E ++I F S+D+L+FYIFFEA L Sbjct: 1 LLFVVLTTLIFPLCLLASWSFDKGDLKTYLISFLSMELVLIIVFTSIDLLVFYIFFEAVL 60 Query: 146 IPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFP 204 IPMF++IGV+G ER + AAY FFLYT FGS+FML +V + ++SI ++ +M+ F Sbjct: 61 IPMFLVIGVYGSRERRVRAAYMFFLYTLFGSMFMLLGVVYIYGVTGSTSIEEI-SMTSFS 119 Query: 205 FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 Q +W+AFF SFA K+PM P H WLP AHV+APT+GSV LAG++LK+G YG +RF L Sbjct: 120 GFDQKVLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTSGSVILAGVLLKLGFYGFLRFSL 179 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 LFP+AS YF P+IF LSL+ I+YAS ++ QTD+K+L+AY+S+AHM + IG+F+G Sbjct: 180 GLFPMASLYFTPLIFSLSLLGIVYASFTAIRQTDLKRLVAYTSVAHMNLIMIGLFTGSVV 239 Query: 325 GVEGAM 330 GVE A+ Sbjct: 240 GVESAV 245 >gi|283795018|ref|YP_003359409.1| NADH dehydrogenase subunit 4 [Olea europaea] gi|281428737|gb|ADA69976.1| NADH dehydrogenase subunit 4 [Olea europaea] Length = 509 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 149/443 (33%), Positives = 258/443 (58%), Gaps = 12/443 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ LP +I F + G ++ + + I + F + F G Sbjct: 12 HFPWLTIIVILPISAGSLIFFLPHRGNRVIRWYTICICILELLITTYAFCYH-FQSGDPL 70 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WID+F + LG+DG+SI ++LT F+T L++ + + + R + L Sbjct: 71 IQLVEDYKWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLFHFLMLA 129 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 130 MYSGQIGLFSCRDLLLFFLMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLM 189 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + +++ A +P +++ +I FF +FA+K+P+ P HTWLP+ H + Sbjct: 190 GVLGIGLYGSNEPTLNLEILANQSYPVALEIIFYIGFFITFAVKLPIIPLHTWLPDTHGE 249 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S+ Q + Sbjct: 250 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLIIVGAMQIIYAASTSLGQRN 309 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 310 LKKRIAYSSVSHMGFIIIGIGSITDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVY 369 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 370 LDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGLITSQKYLLMPKILITF 429 Query: 412 LASFGVVLSALYSLWLYRKVVFG 434 + + G++L+ +YSL + R++ +G Sbjct: 430 VMAIGMILTPIYSLSMSRQMFYG 452 >gi|309322495|ref|YP_003934008.1| NADH-plastoquinone oxidoreductase subunit 4 [Eucalyptus grandis] gi|308223329|gb|ADO23637.1| NADH-plastoquinone oxidoreductase subunit 4 [Eucalyptus grandis] Length = 500 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 161/496 (32%), Positives = 276/496 (55%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ + + + F + F Q Sbjct: 5 PWLTIIVLLPIFAGSLIFFLPHRGNKVIRWYTICICTLELLLTTYTFCYH-FQLNDPLTQ 63 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI++F Y LG+DG+SI ++LT F+T L++ + + + R + L + Sbjct: 64 LTEDYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGGSIFLLIGV 182 Query: 183 VVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++L ++ +P +++ ++I F +F++K+P+ P HTWLP+ H +A Sbjct: 183 LGIGLYGSNEPTLNLETLANQSYPVALEIILYIGFLIAFSVKLPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+L S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLIIVGAIQIIYAALTSPGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGMAIHLPKIFTMFSILSMASLALPGMSGFLAELIVFFGIITSHQYLLMPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL--TVFFGIYPVP 471 + G++L+ +Y L + R++ +G K V L R + I++L + GIYP Sbjct: 423 AIGMILTPIYLLSMLRQMFYGY-KLFNVPNSYFLDFGPRELFVSISILLPIIAIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + +II NY Sbjct: 482 VLSLSVDKVEAIISNY 497 >gi|290486873|gb|ADD29821.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Cornus florida] Length = 500 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 163/479 (34%), Positives = 266/479 (55%), Gaps = 13/479 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ LP +I F + G ++ + + I + F + F Sbjct: 3 DFPWLTIIVVLPIAAGSLIFFLPHRGNRVIKWYTICICILELLLTTYAFCYH-FQSDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WID+F + LG+DG+SI ++LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + A +P ++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNFETSANQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + IIYA+ S+ Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWFIIVGTTQIIYAASTSLGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLAY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---TVAVLASF 415 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + +L +F Sbjct: 361 LDEMGGIAILMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITF 420 Query: 416 ----GVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 421 VMAIGMILTPIYSLSMSRQMFYGYKLFNAPNSYFFDSGPRELFVSISIFLPVIGIGIYP 479 >gi|163781777|ref|ZP_02176777.1| NADH dehydrogenase I chain M [Hydrogenivirga sp. 128-5-R1-1] gi|159882997|gb|EDP76501.1| NADH dehydrogenase I chain M [Hydrogenivirga sp. 128-5-R1-1] Length = 500 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 182/503 (36%), Positives = 281/503 (55%), Gaps = 32/503 (6%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + PF+S+ +P L ++F R V+L + + F+ SL V +FD R++ Sbjct: 7 DFPFISLSLVIPALFALAVVF-----VPERFIRAVSLLGAGLTFLVSLCVLYLFDYSRTA 61 Query: 62 FQMIEYYHWIDYFCSYHLGVDGISILLVV------LTTFLTPFCILSSWKSIQENFR--E 113 +++Y +Y L V L + LTT ++ I+ S + Q +FR E Sbjct: 62 --AVQFYE--EYVILEELRVKLSLGLDGLSLLMYFLTTLVSLVAIVWSVRDRQISFRLRE 117 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y AFL+ ES ++G F S D+L+FY+F+E +LIPM IGVWG R+Y+AYKFF+Y F Sbjct: 118 YFFAFLMTESFLVGVFASFDVLVFYVFYELTLIPMLFAIGVWGYKLRLYSAYKFFIYIFA 177 Query: 174 GSIFMLFAI----VVMCWEKKTSSI--IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFP 227 S+F+L I VV K T S DL S P ++ ++++ FF +FA+K P+ P Sbjct: 178 SSLFLLLGIASVAVVHFTNKGTFSFSYFDLLKNSYTP-GLEIFIFLLFFIAFAVKTPLVP 236 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 FHTWLP+AH +APTAGSV LA I+LKMG Y +RF + LFP A+ P + + +I II Sbjct: 237 FHTWLPDAHGEAPTAGSVVLAAILLKMGTYALLRFNIGLFPDATVKLMPFMVAIGIITII 296 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 YAS +++VQ +IK+ +AYSS++HMG+V +F G+ ++ +M +HG+ S++LF Sbjct: 297 YASWMTIVQNNIKRFVAYSSVSHMGFVVTAMFLLNHEGLRASVMEMFAHGMTSASLFMIA 356 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 G IY RLHT ++ G V MP +AV++ A MGLPG S F G+FL +++ + S Sbjct: 357 GFIYGRLHTFNMENLRGSVKFMPVFAVIVATTAFAAMGLPGGSSFWGKFLTMLAAKEYSY 416 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC----MVYPIAVLTV 463 +A+L G SA Y L++ + + V + + D+ + +V PI V+ Sbjct: 417 QLALLVLAGGFFSAAYVLFMLKTLFLDVKEESILIHFTDVRGFKLASFVMLVVPILVI-- 474 Query: 464 FFGIYPVPIRDTFSVPLSSIIEN 486 G +P + F + I++N Sbjct: 475 --GFFPHLFFNMFEGSIGFILKN 495 >gi|108563641|ref|YP_627957.1| NADH dehydrogenase subunit M [Helicobacter pylori HPAG1] gi|107837414|gb|ABF85283.1| NADH-ubiquinone oxidoreductase chain M [Helicobacter pylori HPAG1] Length = 512 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD ++ Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLILLLWHGFDIQKAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + +YH+GVDGI++ L++L + +L S ++E +++ I L+LE + Sbjct: 64 EMKELVYQIGVNYHVGVDGIALFLLLLNAIV----VLLSVIYVKERRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+++ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNVIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGYYYASNYGMMSFDILDWYQLN-FSGGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I +L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIAALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +GIFS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGIFSFNVEGISGAVFMMFAHGIIVMGLFLLAGILEERASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPVFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAVYMLTSYKDVFFGNLKTGNNQISVFEDLNARE 453 >gi|217032336|ref|ZP_03437832.1| hypothetical protein HPB128_132g34 [Helicobacter pylori B128] gi|298735704|ref|YP_003728229.1| NADH dehydrogenase I subunit M [Helicobacter pylori B8] gi|216946002|gb|EEC24616.1| hypothetical protein HPB128_132g34 [Helicobacter pylori B128] gi|298354893|emb|CBI65765.1| NADH dehydrogenase I chain M [Helicobacter pylori B8] Length = 512 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLILLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + +YH+GVDGI+ L++L + +L S ++E+ +++ I L+LE + Sbjct: 64 EMKELVYQIGVNYHVGVDGIAFFLLLLNAIV----VLLSVIYVKEHRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+M+ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I+D Y ++ F ++ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGYYYASNYGMMSFDILDWYQLN-FSSGVKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS G+ GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMFAHGIIVMGLFLLAGILEERASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPVFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAVYMLTSYKDVFFGNLKAGNNQISVFEDLNARE 453 >gi|153807444|ref|ZP_01960112.1| hypothetical protein BACCAC_01724 [Bacteroides caccae ATCC 43185] gi|149129806|gb|EDM21018.1| hypothetical protein BACCAC_01724 [Bacteroides caccae ATCC 43185] Length = 481 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 142/400 (35%), Positives = 233/400 (58%), Gaps = 7/400 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 SY +GVDGIS+ +++L+ + +SW+ +Q +EY + F +L V G F+S+D+ Sbjct: 63 SYSVGVDGISVAMLLLSAIIVFTGTFASWR-LQPLTKEYFLWFTLLSMGVFGFFISIDLF 121 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSS 193 ++F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + T + Sbjct: 122 TMFMFYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIYFGSGATTMN 181 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++++ + PF+ Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 182 LLEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 241 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A+ + + L+ I+++Y + + VQTD+K + AYSS++H G Sbjct: 242 LGGYGCFRIAMYLMPEAANELSWIFLILTGISVVYGAFSACVQTDLKYINAYSSVSHCGL 301 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP + Sbjct: 302 VLFAILMLNQTAATGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRELAGLMKIMPFLS 361 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V ++ +AN+GLPG SGFI E + + FQN++ T+ ++A +V++A+Y L L Sbjct: 362 VCYVIAGLANLGLPGLSGFIAEMTIFVGSFQNNDVFHRTLTIIACSSIVITAVYILRLVG 421 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K+++G + L D + ER V + G+ P Sbjct: 422 KILYGTCTNKHHLTLTDATWDERVAVICLIACVAGLGMAP 461 >gi|161784243|ref|YP_001595559.1| NADH dehydrogenase ND4 subunit [Lemna minor] gi|193806244|sp|A9L9E7|NU4C_LEMMI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|88696821|gb|ABD48546.1| NADH dehydrogenase ND4 subunit [Lemna minor] Length = 500 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 159/497 (31%), Positives = 267/497 (53%), Gaps = 17/497 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+++ P F G F+ G + +GI + + +V+ F Sbjct: 5 PWLTLIVVFPIFAGCFIFFLPHK---GNKVVRWYTMGICLLELLIMTYVFCYHFKLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 QM + + WI+ F + LG+DG+SI ++LT F+T L++W +++ R + L Sbjct: 62 IQMEDDFQWINVFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGLFSSRDLLLFFMMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLI 180 Query: 181 AIVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ M ++ A +P ++ ++ F +FA+K+P+ P HTWLP+ H + Sbjct: 181 GVLGMGLYGSNGPTLNFETVANQSYPLGLEILLYFGFLIAFAVKLPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + A F+P + + I IIYA+L S+ Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLIRINMEFLSHAHSIFSPWLVIVGTIQIIYAALTSLGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q+LSHG + +ALFF G DR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGIGSLTNTGLNGAILQLLSHGFIGAALFFLGGTSCDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 361 LDEMGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELMVFLGIITSQKYLLMTKIIITL 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +Y L + R++ +G D RE + I + + GIYP Sbjct: 421 VMAIGIILTPIYLLSMLRQMFYGYKLFNLSNSFFVDSGPRELFVSICIFLPVIAIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 481 LVISLSVDKVQQILSNY 497 >gi|159031043|emb|CAO88746.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 516 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 159/473 (33%), Positives = 255/473 (53%), Gaps = 17/473 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVF-----DKGRS 60 LS + +LP +G ++ G F L T+ F+ ++ +WS++ + S Sbjct: 2 LSTLLWLPIIGAIIV------GLFPDKFAPAKLRQITVFFVAAVLLWSLYLLTQYNLTSS 55 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 FQ EY W SY+LGVDG+S+ L++L FLT I S+ + + E R Y I L Sbjct: 56 GFQFSEYREWAKPIGLSYNLGVDGLSLPLIILNCFLTGIAIYSTEEKL-ERPRLYYILIL 114 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++ + V GA ++ ++LLF +F+E LIP +++I +WGG +R YA+ KF LYT + +L Sbjct: 115 LINAGVSGALMAKNLLLFIVFYELELIPFYLMIAIWGGEKRGYASIKFLLYTAVSGLLVL 174 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A + + + + + + F Q + F IKIP+ P HTWLP+A+ +A Sbjct: 175 AAFLGIGFLNGGTFDYSSLSTADFSQKTQLLLLTLLLVGFGIKIPLVPLHTWLPDAYTEA 234 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 A ++ L GI+ K+G YG +RF L LFP AP + + +I++IY +L ++ Q DI Sbjct: 235 SPATAILLGGILAKLGTYGLVRFGLQLFPETWSLIAPGLAIVGVISVIYGALSAIAQKDI 294 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+++AYSSI HMGY+ + +G V GA+ QM+SHGL+ + LF+ VG++ + TRD+ Sbjct: 295 KRMVAYSSIGHMGYILVAAAAGTGLSVLGAVAQMISHGLILALLFYLVGIVERKAGTRDL 354 Query: 360 FAYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 GL + +P + ++++ MA+ G+PG GF+ EF+V F VL Sbjct: 355 DILNGLMNPIRGLPLVSALLILAGMASAGIPGLVGFVAEFIVFQGSFSRFPVQTVLCIIA 414 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+A+Y + L + FG K+ + E + + VL VF GI P Sbjct: 415 SGLTAVYFVILLNRTCFG-KLDNKLAYYPKVLKSETIPAFVLMVLIVFLGIQP 466 >gi|82799248|gb|ABB92175.1| NADH dehydrogenase I chain 4 [uncultured marine type-A Synechococcus 4O4] Length = 496 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 158/409 (38%), Positives = 240/409 (58%), Gaps = 13/409 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD + Q++E W+ Y L VDG+S+ LV++ L ++S +SI R Sbjct: 51 FDPADAGLQLVEQARWVHAIGLDYALAVDGLSLPLVLMNGVLCLVAAIAS-RSIDNRPRI 109 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV+ V GAFL+ ++LLF++F+E LIP++++I VWGG+ R YAA KF + T Sbjct: 110 YFALLLVISGAVNGAFLAQNLLLFFLFYELELIPLWLLIAVWGGANRAYAATKFLIVTAV 169 Query: 174 GSIFMLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 + +L A + + + T S+ + A + + Q + A F IKIP+FPFHTW Sbjct: 170 SGVLILAAFLGLAFVSGTLDFSLQPIMA-GELGMTAQLVLMGALLIGFGIKIPLFPFHTW 228 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A T SV LAG++LK+G YG +RF L LFP A Q +P + + I+++Y SL Sbjct: 229 LPDAHTEASTPVSVLLAGVLLKLGTYGLLRFCLGLFPEAWQLASPWLAAWAAISVLYGSL 288 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ QTD+K+++AYSS+ HMGYV + + G+ GA+FQM+SHGL+S LF VGV+Y Sbjct: 289 AAIAQTDMKRMVAYSSVGHMGYVLLAAAAATPLGLMGALFQMISHGLISGVLFLLVGVVY 348 Query: 352 DRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 R TRD+ GL++ +P +M++ MA+ G+PG +GFI EFL+ Q Sbjct: 349 ARTGTRDLNVLRGLLNPQRGLPLTGSLMIIGVMASAGIPGMAGFISEFLIFRGSLQPFPI 408 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFG---VSKCEKVQQ--LKDLSLRER 452 +L+ G L+A+Y L L + FG ++ E V L ++LRE+ Sbjct: 409 ATLLSMVGSGLTAVYFLLLVNRAFFGRLAIAPGEVVNPRILDRVALREQ 457 >gi|207092490|ref|ZP_03240277.1| NADH dehydrogenase subunit M [Helicobacter pylori HPKX_438_AG0C1] Length = 494 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLILLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + +YH+GVDGI++ L++L + +L S ++E +++ I L+LE + Sbjct: 64 ETKELVYQIGVNYHVGVDGIALFLLLLNAIV----VLLSVIYVKERRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+++ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNVIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + ++ I+D Y ++ F I+ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGYYYASNYGMMSFDILDWYQLN-FSSEIKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS GV GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGVSGAVFMMFAHGIIVMGLFLLAGILEERASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LSA+Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSAVYMLTSYKDVFFGNLKAGNNQISVFEDLNARE 453 >gi|148657107|ref|YP_001277312.1| proton-translocating NADH-quinone oxidoreductase subunit M [Roseiflexus sp. RS-1] gi|148569217|gb|ABQ91362.1| proton-translocating NADH-quinone oxidoreductase, chain M [Roseiflexus sp. RS-1] Length = 561 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 179/541 (33%), Positives = 284/541 (52%), Gaps = 74/541 (13%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD-----KG 58 P+L+++ P +G+ + + L R+ A ST+ ++ VW F+ G Sbjct: 10 PWLTLLILSPLVGLALTALAGALRLDDRTAMIGATAWSTVPLALAIIVWVGFNPNATADG 69 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + Q +E W+ Y +GVDGIS+ LV+LT +TP +L+S+ S+ + + Y+ Sbjct: 70 QGVVQFVEKIPWVQAIRVDYFVGVDGISMPLVILTAAMTPVAMLASF-SVTQRVKLYLAL 128 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG---------GSERIYAAYKFF 168 +LE+ ++G FL+L+ F+IF+E SL+P + +I WG R AA KFF Sbjct: 129 MFLLETAMLGYFLALNFFFFFIFWEFSLVPAYFLIQGWGRRHTTDADPEQRRRDAALKFF 188 Query: 169 LYTFFGSIFML-----------------FAIVVMCW-------EKKTSSIIDLY------ 198 +YT GSI ML F ++ + E+ ++L Sbjct: 189 VYTMAGSIGMLLLFQFFYVATAAAGIPTFDLITLARLGQGLTVERAALDPVNLTLQEIIF 248 Query: 199 ----------AMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + ++P SI +W A F +FAIK+ ++PFHTWLP+A+ +AP A S+ Sbjct: 249 NYVEQLGIADVLGRYPLLYTSIAFW---AIFIAFAIKLGIWPFHTWLPDAYSEAPPAASI 305 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT--DIKKLI 303 LA +M KMG YG +R +LPL P A+QYF P I L+LI ++ + ++ Q D+K+LI Sbjct: 306 LLAAVMSKMGAYGMLRLMLPLVPDAAQYFGPAIGALALIGVVAGAFGALGQVGGDLKRLI 365 Query: 304 AYSSIAHMGYVTIGIFSGM----------KSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 AY+S+ HMGYV + I + + + GA+FQM++HGL + ALF G++ +R Sbjct: 366 AYTSVNHMGYVGLAIAAAATVGAADVATRATAINGALFQMVAHGLSTGALFLMAGMLAER 425 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 + D+ + GL MP +A M V T AN+GLPG +GF+GEF + V+ + A+LA Sbjct: 426 TGSDDMRSLAGLRTTMPVFAGAMGVATFANLGLPGLAGFVGEFFIFRGVWASLPLFALLA 485 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 + G+V++AL L +Y ++ G + L+ RE V P+ + + GIYP PI Sbjct: 486 TIGLVVTALALLRMYGQMFHGQTNERSAMPDMRLAGREFLAVAPLLIALLILGIYPAPIM 545 Query: 474 D 474 D Sbjct: 546 D 546 >gi|87303296|ref|ZP_01086089.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. WH 5701] gi|87282191|gb|EAQ74152.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. WH 5701] Length = 524 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 153/444 (34%), Positives = 248/444 (55%), Gaps = 13/444 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD G S Q++E W+ + LG DG+S LVVL+ +T + +SW +I + Sbjct: 70 FDGGLSGLQLVERLPWVPLLGLEWSLGADGLSAPLVVLSGLVTLLAVAASW-NINRKTQL 128 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L+ S FLS D LLF++ +E L+P++++I +WGG++R YAA KF LYT Sbjct: 129 YFGLLLLQASAQSLVFLSQDFLLFFLAWELELVPVYLLIAIWGGTQRQYAATKFILYTAT 188 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM--WIAFFCSFAIKIPMFPFHTW 231 S+ +L + + + ++ +L +S+ + + + ++ F F +K+PMFP HTW Sbjct: 189 ASLLILISGLALALGGDGFTL-NLQELSQRSYGGSFGLLCYLGFLVGFGVKLPMFPLHTW 247 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A S+ LAG++LKMGGY +RF + + P A AP + L ++ IIY +L Sbjct: 248 LPDAHGEANAPVSMLLAGVLLKMGGYALLRFNVQMLPDAHVQLAPALVVLGIVNIIYGAL 307 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 + Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++++FF GV Y Sbjct: 308 NAFAQDNVKRRIACSSVSHMGFVLLGIGAIDSLGMSGAMLQMISHGLIAASMFFVTGVFY 367 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---- 407 +R T I GGL +P + ++A++ LPG SGFI E V + + N Sbjct: 368 ERTKTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGFISEITVFLGITANDGFTVP 427 Query: 408 ---TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 VLA+ G+VL+ +Y L L R+V FG + + + D+ RE + + V T+ Sbjct: 428 FRVVTIVLAAIGLVLTPVYLLSLCRRVFFG-PRIPALAVVGDMKPRELVIGLCLLVPTLA 486 Query: 465 FGIYPVPIRDTFSVPLSSIIENYT 488 G +P D + +++ E + Sbjct: 487 IGFWPRLAIDFYGATTTALAEGLS 510 >gi|163847537|ref|YP_001635581.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroflexus aurantiacus J-10-fl] gi|222525387|ref|YP_002569858.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroflexus sp. Y-400-fl] gi|163668826|gb|ABY35192.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroflexus aurantiacus J-10-fl] gi|222449266|gb|ACM53532.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroflexus sp. Y-400-fl] Length = 503 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 138/401 (34%), Positives = 238/401 (59%), Gaps = 5/401 (1%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 +D R FQ +EY WI SY LG DGI++ +++L + L SW +I+E +E Sbjct: 60 YDPVRGGFQFVEYLDWIPQLGISYLLGADGINLPMLLLNGIVIFTGALMSW-NIEERIKE 118 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y + L+L + V G F +LD+ LF++F+E +++PM+++IG+WG + + Y A K L+ Sbjct: 119 YWVWLLLLTTGVYGVFSALDLFLFFVFYELAVLPMYLLIGIWGSTRKEYGAMKLTLFLMA 178 Query: 174 GSIFMLFAIVVMCWEK--KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 GS ++ ++ + + +T +++ L +Q ++ A F F + MFPFHTW Sbjct: 179 GSALVIIGMIGLYFGSGLRTFNMLVLAEQGFIAGDLQRLLFPALFVGFGVLAGMFPFHTW 238 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 P HV APTA S+ AG+++K+G YGC+R + L P+ ++ + P++ L+++ ++Y + Sbjct: 239 SPTGHVAAPTAVSMLHAGVLMKLGAYGCLRAAMWLMPIGARDWLPIVVILTILNVVYGAS 298 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG-VI 350 ++MVQ D K +I YSS++HMG V +G+ +G + V GA+ QM +HG++++ F VG +I Sbjct: 299 IAMVQRDAKFIIGYSSVSHMGLVVMGLAAGTQIAVMGAVLQMFAHGIMTALFFAVVGRMI 358 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 YDR HTR + GGL MP A + ++ +++MG+PG +GF EF + + V++ VA Sbjct: 359 YDRTHTRQLPELGGLGRVMPFAAAMFILGGLSSMGMPGLAGFWAEFNIFIGVWERYPLVA 418 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 V+A+ + ++ Y L V + K + L L+ +E Sbjct: 419 VIAALSIPITGAYILRAVWAVFYDEVKNPEFLHLPKLTWQE 459 >gi|327333134|gb|EGE74861.1| NADH-quinone oxidoreductase, M subunit [Propionibacterium acnes HL097PA1] Length = 497 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 154/478 (32%), Positives = 266/478 (55%), Gaps = 16/478 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+++ LPF+G +I+ G R+ + S + + ++ + V G + Sbjct: 1 MSFPILTVIALLPFVGGVIIMM--LRGAAARA---TGMVFSLVTLVLGVYAFIV---GVN 52 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAF 118 + E + WI + Y LG DG+S+ +++L L P +L+ W E R AF Sbjct: 53 GTNLSETHRWIRAVGAWYALGGDGLSLTMILLVVILVPVVLLAEWHVGDDETARWSTGAF 112 Query: 119 ----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L+LE + I F + D+LLFY+ FEA+LIPM+ +I WGG R AA KF LY+ G Sbjct: 113 FGLALMLEGLAIYCFAATDVLLFYLMFEATLIPMYFLIAGWGGPRRGRAAMKFLLYSLAG 172 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + MLFA++ + + + DL A F +I +++ FF +FAIK PM P HTWLP+ Sbjct: 173 GLVMLFAVIGVGVHGGSFLLSDL-AKVDFSGTIGKELFVGFFIAFAIKAPMVPVHTWLPD 231 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 QA S L G++ K+G +G +R L LFP AS + P + L++I++++ ++++ Sbjct: 232 TAEQATAGASSLLVGLLDKIGTFGMLRLCLGLFPAASDWATPFVLTLAIISVLWGAMMAA 291 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 +D+ + ++Y+S++H G++ IGIF+ + + G++F M +HG ++ALF +G + R Sbjct: 292 TSSDLMRFVSYTSVSHFGFMVIGIFALTTTSITGSIFYMFNHGFSTAALFLVLGFLVRRG 351 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T + YGG+ P A + +A + LPGT F+ EF+ + + +++ Sbjct: 352 GTAKVDGYGGVQKVAPVLAGTFLFAGLATLSLPGTGNFVSEFMALAGAWSRHPIYVAIST 411 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 G+VL+A+Y L YR+ + G + +Q+ DL+ RE+ ++ P+ +L + FG +P P+ Sbjct: 412 IGMVLAAVYVLVTYRRTMTGPVQGVS-EQVSDLNGREKLVLAPLIILLLVFGFFPRPM 468 >gi|218129262|ref|ZP_03458066.1| hypothetical protein BACEGG_00839 [Bacteroides eggerthii DSM 20697] gi|317475234|ref|ZP_07934501.1| proton-translocating NADH-quinone oxidoreductase [Bacteroides eggerthii 1_2_48FAA] gi|217988640|gb|EEC54960.1| hypothetical protein BACEGG_00839 [Bacteroides eggerthii DSM 20697] gi|316908687|gb|EFV30374.1| proton-translocating NADH-quinone oxidoreductase [Bacteroides eggerthii 1_2_48FAA] Length = 495 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 145/420 (34%), Positives = 235/420 (55%), Gaps = 7/420 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L+ + +SW+ +Q +EY + F +L V G F+S D+ Sbjct: 77 YSVGVDGISVAMLLLSAIIVFTGTFASWR-LQPLTKEYFLWFTLLSMGVFGFFISTDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSI 194 ++F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + T ++ Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIYFGSGGTTMNL 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ + P Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 LEIAQLHNIPIEQQRIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 255 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A+Q + L+ I+++Y + + VQTD+K + AYSS++H G V Sbjct: 256 GGYGCFRIAMYLMPEAAQELGWIFLVLTGISVVYGAFSACVQTDLKYINAYSSVSHCGLV 315 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP AV Sbjct: 316 LFAILMMNRTACTGAVLQMLSHGLMTALFFALIGMIYGRTHTRDVRELNGLMKIMPFLAV 375 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV----AVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGFI E + FQ+ +T V+A +V++A+Y L L K Sbjct: 376 SYVIAGLANLGLPGLSGFIAEMTIFNGAFQHPDTFHRVWTVIACTSIVITAVYILRLVGK 435 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLK 490 +++G + L D + ER V + G+ P+ + + + I+ N +K Sbjct: 436 ILYGTCTDKHHLTLSDATWDERTAVIILIACVAGLGLAPLWMSNMIGDSVLPIVNNLVMK 495 >gi|325857156|ref|ZP_08172446.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella denticola CRIS 18C-A] gi|325483219|gb|EGC86197.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella denticola CRIS 18C-A] Length = 503 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 141/401 (35%), Positives = 237/401 (59%), Gaps = 7/401 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++ +GVDGIS+++++L+ + +SW+ ++ +EY + F++L S V G F+S DM Sbjct: 77 AFSVGVDGISVVMILLSAVIVFTGTFASWQ-LEPMKKEYFLWFVLLASGVFGFFISTDMF 135 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + Y+A K L GS ++ I+ + + T Sbjct: 136 TMFMFYEVALIPMYLLIGVWGTGPKEYSAMKLTLMLMGGSALLILGILGIYYFSGATTMD 195 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +L M P ++Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 196 VTELARMHAMPKNVQNIFFPFVFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 255 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC+R + L P A Q +APV L+ I+++Y +L + VQTD+K + AYSS++H G Sbjct: 256 LGGYGCLRIAMFLMPDALQTWAPVFLVLTTISVVYGALSACVQTDLKYINAYSSVSHCGM 315 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F C+G+IY R TRD+ GGL+ +P A Sbjct: 316 VLFALLMMTQTAITGAILQMLSHGLMTALFFACIGMIYHRAGTRDVRYLGGLMKVIPFLA 375 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS----NTVAVLASFGVVLSALYSLWLYR 429 V +V +AN+GLPG SGF+ E + + F+N+ +++ +V++A+Y L + Sbjct: 376 VSYVVAGLANLGLPGFSGFVAEMTIFVGSFENAGMFHRVATIISCTAIVITAVYILRVVG 435 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 K++F +K +L D + ER V + G+ P+ Sbjct: 436 KILFQAIPNKKFYELHDATWDERFAVGALIFCVAGLGLCPL 476 >gi|116072230|ref|ZP_01469497.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus sp. BL107] gi|116064752|gb|EAU70511.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus sp. BL107] Length = 496 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 168/468 (35%), Positives = 259/468 (55%), Gaps = 12/468 (2%) Query: 12 LPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI 71 +PF G +L R G A+ I + + S + FD ++ Q++E W+ Sbjct: 9 IPFTGALGLLLWPTAQSSERIRIG-AIVILALQCVASFALLLPFDPTDAALQLVEQARWV 67 Query: 72 DYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 Y L VDG+S+ LV++ L ++S +SI R Y LV+ V GAFL Sbjct: 68 HSIGLDYALAVDGLSLPLVLMNAVLCLVAAVAS-RSIDNRPRIYFALLLVISGAVNGAFL 126 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 S ++LLF++F+E LIP++++I VWGG+ R YAA KF + T + +L A + + + Sbjct: 127 SQNLLLFFLFYELELIPLWLLIAVWGGANRSYAATKFLIVTAVSGMLILGAFLGLAFVTG 186 Query: 191 TSSIIDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 T +S + Q+ + A F IKIP+FPFHTWLP+AH +A T SV LAG Sbjct: 187 TMDFSLRPILSGELGLKAQFLLMGALLIGFGIKIPLFPFHTWLPDAHTEASTPVSVLLAG 246 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+G YG +RF L LFP A Q AP + + I+++Y SL ++ QTD+K+++AYSS+ Sbjct: 247 VLLKLGTYGLLRFCLGLFPEAWQIAAPWLAAWAAISVLYGSLAAIAQTDMKRMVAYSSVG 306 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH-- 367 HMGYV + + G+ GA+FQM+SHGL+S LF VGV+Y R TRD+ GL++ Sbjct: 307 HMGYVLLAAAAATPLGLMGALFQMISHGLISGVLFLLVGVVYARTGTRDLNVLRGLLNPE 366 Query: 368 -NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P +M++ MA+ G+PG +GFI EFL+ Q +L+ G L+A+Y L Sbjct: 367 RGLPLTGSLMIIGVMASAGIPGMAGFISEFLIFRGSLQPFPVATLLSMVGSGLTAVYFLL 426 Query: 427 LYRKVVFG-----VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L + FG + + L ++LRE+ +++ + G+ P Sbjct: 427 LVNRAFFGRLAIAPGEVANPRILDPVALREQVPAIALSLGVLALGLAP 474 >gi|309792508|ref|ZP_07686972.1| proton-translocating NADH-quinone oxidoreductase, chain M [Oscillochloris trichoides DG6] gi|308225496|gb|EFO79260.1| proton-translocating NADH-quinone oxidoreductase, chain M [Oscillochloris trichoides DG6] Length = 553 Score = 256 bits (654), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 162/480 (33%), Positives = 260/480 (54%), Gaps = 57/480 (11%) Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 G+++ Q +E WID Y + VDG+S+ +V+LT +TP +++SW + + + Sbjct: 71 DGQAALQFVEKIPWIDSIRVDYFMAVDGLSLPMVLLTVVMTPLGVIASW-GVNTRVKTHF 129 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L+LE+ ++G F++L+ F+IF+E SL+P + +I +WG R YAA+KFF+YT GS Sbjct: 130 ALLLLLEAAMLGYFVALNFFFFFIFWEFSLVPAYFLIQLWGRENRRYAAFKFFIYTMAGS 189 Query: 176 IFML--FAIVVMCW----------------------EKKTSSIIDL-----------YAM 200 + ML F ++ + E T S+ D+ ++ Sbjct: 190 VGMLLLFQVIYLATRYAGAPTFDLITLGRLGQGLPVEGVTGSLRDVIFNYMQHLGVAESL 249 Query: 201 SKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 ++P SI +W A F +FAIK+ ++PFHTWLP+A+ +AP AGSV L+ +M KMG Y Sbjct: 250 GRYPLLYTSIAFW---AIFIAFAIKLAVWPFHTWLPDAYSEAPVAGSVLLSAVMSKMGAY 306 Query: 258 GCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM--VQTDIKKLIAYSSIAHMGYVT 315 G +R +LPL P A+QYFAPV+ L+L+ I+ + ++ + D+K+LI Y+SI HMGYV Sbjct: 307 GMLRIMLPLVPDAAQYFAPVMGGLALVGIVAGAFGALANISGDVKRLIGYTSINHMGYVM 366 Query: 316 IGIF-----------SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 + I + GA+ QM++HGL + ALF+ G + R + ++ GG Sbjct: 367 LAIAAAAALPGGASQDSRAIAINGALMQMVAHGLSTGALFYLAGALQQRTGSWELNGLGG 426 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L P +A VM + AN+GLPG +GF+GEF + + LA G++++AL Sbjct: 427 LRTVAPTFAGVMGMAMFANLGLPGLAGFVGEFFIFRGAWATLPLFTALAVIGLIITALAL 486 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 L +Y+++ G E Q DL E P VL + G+YP PI + + + ++ Sbjct: 487 LIMYQRIFLG-PTGEAAQGFADLRPMELWSTVPFLVLLLILGVYPAPIMNLANAAATQLV 545 >gi|33866242|ref|NP_897801.1| NADH dehydrogenase I chain 4 (or M) [Synechococcus sp. WH 8102] gi|33639217|emb|CAE08225.1| NADH dehydrogenase I chain 4 (or M) [Synechococcus sp. WH 8102] Length = 496 Score = 256 bits (654), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 158/409 (38%), Positives = 240/409 (58%), Gaps = 13/409 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD + Q++E W+ Y L VDG+S+ LV++ L ++S +SI R Sbjct: 51 FDPADAGLQLVEQARWVHAIGLDYALAVDGLSLPLVLMNGVLCLVAAIAS-RSIDNRPRI 109 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV+ V GAFL+ ++LLF++F+E LIP++++I VWGG+ R YAA KF + T Sbjct: 110 YFALLLVISGAVNGAFLAQNLLLFFLFYELELIPLWLLIAVWGGANRAYAATKFLIVTAV 169 Query: 174 GSIFMLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 + +L A + + + T S+ + A + + Q + A F IKIP+FPFHTW Sbjct: 170 SGVMILAAFLGLAFVSGTMDFSLQPIMA-GELGMTAQLVLMGALLIGFGIKIPLFPFHTW 228 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A T SV LAG++LK+G YG +RF L LFP A Q +P + + I+++Y SL Sbjct: 229 LPDAHTEASTPVSVLLAGVLLKLGTYGLLRFCLGLFPEAWQLASPWLAAWAAISVLYGSL 288 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ QTD+K+++AYSS+ HMGYV + + G+ GA+FQM+SHGL+S LF VGV+Y Sbjct: 289 AAIAQTDMKRMVAYSSVGHMGYVLLAAAAATPLGLMGALFQMISHGLISGVLFLLVGVVY 348 Query: 352 DRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 R TRD+ GL++ +P +M++ MA+ G+PG +GFI EFL+ Q Sbjct: 349 ARTGTRDLNVLRGLLNPQRGLPLTGSLMIIGVMASAGIPGMAGFISEFLIFRGSLQPFPI 408 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFG---VSKCEKVQQ--LKDLSLRER 452 +L+ G L+A+Y L L + FG ++ E V L ++LRE+ Sbjct: 409 ATLLSMVGSGLTAVYFLLLVNRAFFGRLAIAPGEVVNPRILDRVALREQ 457 >gi|237714291|ref|ZP_04544772.1| NADH dehydrogenase subunit I [Bacteroides sp. D1] gi|229445783|gb|EEO51574.1| NADH dehydrogenase subunit I [Bacteroides sp. D1] Length = 481 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 142/400 (35%), Positives = 234/400 (58%), Gaps = 7/400 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 SY +GVDGIS+ +++L+ + +SW+ +Q +EY + F +L V G F+S+D+ Sbjct: 63 SYSVGVDGISVAMLLLSAVIVFTGTFASWR-LQPLTKEYFLWFTLLSMGVFGFFISVDLF 121 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSS 193 ++ +E +LIPM+++IGVWG + YAA K L GS F+L I+ + + T + Sbjct: 122 TMFMSYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIYFGSGATTMN 181 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++++ + PF+ Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 182 LLEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 241 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A+ + + L+ I+++Y + + VQTD+K + AYSS++H G Sbjct: 242 LGGYGCFRIAMYLMPEAANELSWIFLILTGISVVYGAFSACVQTDLKYINAYSSVSHCGL 301 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP + Sbjct: 302 VLFAILMLNQTAATGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRELAGLMKIMPFLS 361 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V ++ +AN+GLPG SGFI E + + FQN++ T+ ++A +V++A+Y L L Sbjct: 362 VCYVIAGLANLGLPGLSGFIAEMTIFVGSFQNNDVFHRTLTIIACSSIVITAVYILRLVG 421 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K+++G + +L D + ER V + V G+ P Sbjct: 422 KILYGTCTNKHHLELTDATWDERVAVICLIVCVAGLGMAP 461 >gi|186684411|ref|YP_001867607.1| NAD(P)H-quinone oxidoreductase subunit D4 [Nostoc punctiforme PCC 73102] gi|186466863|gb|ACC82664.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nostoc punctiforme PCC 73102] Length = 501 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 178/470 (37%), Positives = 272/470 (57%), Gaps = 10/470 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ +P +G +I FS G + GVAL + I F++++ + F G + Q Sbjct: 2 LSVLILVPLIGAALIGFSPS-GINGKFARGVALVFAIIAFLWTIVLAIQFHPGEITQQFA 60 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E WID +Y+LG+DG+S+ L+ L LT I SS +S+Q + Y L+L + Sbjct: 61 ESVPWIDVLGLNYNLGIDGLSLPLLGLNGLLTSIAIYSSDESLQRP-KFYYSLILLLSAG 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V GAFL+ D+LLF++F+E LIP++++I +WGG +R YAA KF +YT I +L + + Sbjct: 120 VTGAFLAQDLLLFFLFYELELIPLYLLIAIWGGEKRGYAATKFLIYTAVSGILILASFLG 179 Query: 185 MCWEKKTSS--IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 M W +SS + L A + + + + F IKIP+ PFHTWLP+AHV+A T Sbjct: 180 MVWLSGSSSFALATLNATTLPLATQLLLL-VGILIGFGIKIPLVPFHTWLPDAHVEASTP 238 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 SV LAG++LK+G YG +RF + L P A Y AP + ++++++Y + ++ QTD+KK+ Sbjct: 239 ISVLLAGVLLKLGTYGLLRFGMNLLPEAWAYVAPWLATWAVVSVLYGASCAIAQTDMKKM 298 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 +AYSSI HMGYV + + V GA+ QM+SHGL+S+ LF VGV+Y + +RD+ Sbjct: 299 VAYSSIGHMGYVLLATAASTPLSVLGAVMQMISHGLISAMLFLLVGVVYKKAGSRDLDVL 358 Query: 363 GGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL++ MP +M++ MA+ G+PG GFI EF++ F +L+ G L Sbjct: 359 QGLLNPERGMPVIGSLMVLGVMASAGIPGMVGFISEFIIFRGSFPVFPVQTLLSMLGTGL 418 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +A+Y L L + FG +V L + +R +AVL V FGI P Sbjct: 419 TAVYFLILLDRAFFG-RLSAQVTNLPRVYWSDRIPAAILAVLIVIFGIQP 467 >gi|290486863|gb|ADD29816.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Nelumbo nucifera] Length = 500 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 160/495 (32%), Positives = 269/495 (54%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ +++ + + + F + F Q Sbjct: 5 PWLTIIVVLPISAGSLIFFLPHKGNKVIRWYTISICLIELLLMTYAFCYH-FKLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI+ F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LEEDYKWINIFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLLGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + M ++ A +P +++ + F ++A+K P+ P HTWLP+ H +A Sbjct: 183 LGMGLYGSNEPTLNFETSANQSYPVALEIIFYFGFLIAYAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + P A F+P + + I IIYA+L S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMEFLPHAHSIFSPWLMIVGTIQIIYAALTSPGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG+ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFTIIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSPKYLLMPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +YSL + R++ +G D RE + I + + GIYP + Sbjct: 423 AIGMILTPIYSLSMLRQMFYGYKLFNASNSYFFDSGPRELFVSISIFLPVIGIGIYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + +I+ NY Sbjct: 483 LSLSVDKVEAILSNY 497 >gi|254779815|ref|YP_003057921.1| NADH dehydrogenase subunit M [Helicobacter pylori B38] gi|254001727|emb|CAX29958.1| NADH-ubiquinone oxidoreductase, NQO13 subunit [Helicobacter pylori B38] Length = 512 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 166/455 (36%), Positives = 264/455 (58%), Gaps = 19/455 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+V F P L + F S R++ A+ I+ I + L +W FD + Q Sbjct: 9 LSVVIFFPMLSALLAFFMS--DQASRAY---AIVIALIELLLILLLWHGFDIQTAGMQFE 63 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + +YH+GVDGI++ L++L + +L S ++E +++ I L+LE + Sbjct: 64 ETKELVYQIGVNYHVGVDGIALFLLLLNAIV----VLLSVIYVKERRKDFAICLLLLEGI 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G F SL+++ FY F+E SL+P+ +IG +G + +IY+ KFFLYTF S+ ML I+ Sbjct: 120 LMGVFSSLNVIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCMLLGILY 179 Query: 185 MCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + ++ + I+D Y ++ F I+ W+++AF A+KIP+FP HTWLP A+ Sbjct: 180 IGYDYANNYGMMSFDILDWYQLN-FSSEIKTWLFVAFLIGIAVKIPLFPLHTWLPYAYSN 238 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I +L IIY ++ Q D Sbjct: 239 APTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIAALCMIIYGGFLAYAQKD 298 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS +HMG V +G+FS GV GA+F M +HG++ LF G++ +R + + Sbjct: 299 LKTLIAYSSFSHMGVVVLGVFSFNVEGVSGAVFMMFAHGIIVMGLFLLAGILEERASSLE 358 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F +A++A ++ Sbjct: 359 IARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLLAIIAGTSII 418 Query: 419 LSALYSLWLYRKVVFGVSKC--EKVQQLKDLSLRE 451 LS +Y L Y+ V FG K ++ +DL+ RE Sbjct: 419 LSVVYMLTSYKDVFFGNLKAGNNQISVFEDLNARE 453 >gi|294809418|ref|ZP_06768123.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides xylanisolvens SD CC 1b] gi|294443354|gb|EFG12116.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides xylanisolvens SD CC 1b] Length = 464 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 142/400 (35%), Positives = 234/400 (58%), Gaps = 7/400 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 SY +GVDGIS+ +++L+ + +SW+ +Q +EY + F +L V G F+S+D+ Sbjct: 46 SYSVGVDGISVAMLLLSAVIVFTGTFASWR-LQPLTKEYFLWFTLLSMGVFGFFISVDLF 104 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSS 193 ++ +E +LIPM+++IGVWG + YAA K L GS F+L I+ + + T + Sbjct: 105 TMFMSYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIYFGSGATTMN 164 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++++ + PF+ Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 165 LLEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 224 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A+ + + L+ I+++Y + + VQTD+K + AYSS++H G Sbjct: 225 LGGYGCFRIAMYLMPEAANELSWIFLILTGISVVYGAFSACVQTDLKYINAYSSVSHCGL 284 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP + Sbjct: 285 VLFAILMLNQTAATGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRELAGLMKIMPFLS 344 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V ++ +AN+GLPG SGFI E + + FQN++ T+ ++A +V++A+Y L L Sbjct: 345 VCYVIAGLANLGLPGLSGFIAEMTIFVGSFQNNDVFHRTLTIIACSSIVITAVYILRLVG 404 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K+++G + +L D + ER V + V G+ P Sbjct: 405 KILYGTCTNKHHLELTDATWDERVAVICLIVCVAGLGMAP 444 >gi|291515388|emb|CBK64598.1| NADH dehydrogenase subunit M [Alistipes shahii WAL 8301] Length = 481 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 146/418 (34%), Positives = 240/418 (57%), Gaps = 11/418 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L+ + +SW+ ++ + + Y + F +L V G F+S+D+ Sbjct: 64 YAVGVDGISVAMLLLSAVIVFTGTFASWQ-MKTDVKAYFLWFCLLSVGVFGFFISVDLFT 122 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSI 194 ++F+E +LIPM+++IGVWG + YAA K L GS +L I+ + + T +I Sbjct: 123 MFLFYEVALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSALLLIGILGIYFGAGATTMNI 182 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 ++ A++ P + Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 183 QEIAALNNIPVAQQRIWFPLVFVGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 242 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A+ + V L+ I+++Y + + VQTD+K + AYSS++H G V Sbjct: 243 GGYGCFRVAMYLLPEAAHELSWVFIILTTISVVYGAFSACVQTDLKYINAYSSVSHCGLV 302 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA+ QMLSHGL+++ F +G+IY R HTRDI GGL+ MP AV Sbjct: 303 LFAVLMMNTTAGTGAVLQMLSHGLMTALFFALIGMIYGRTHTRDIRQLGGLMKVMPFLAV 362 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGF+ E + F N++T V V+A +V++A+Y L + K Sbjct: 363 GYVIAGLANLGLPGLSGFVAEMTIFNGAFMNADTFHRVVTVIACTSIVITAVYILRVVGK 422 Query: 431 VVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 +++ C+ + LK D + ER V + V G+ P+ + D ++ II + Sbjct: 423 ILY--DTCDNPEHLKLSDATWDERLSVVCLVVAIAGMGLAPLWVSDMIRGSVAEIIAH 478 >gi|123968185|ref|YP_001009043.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. AS9601] gi|123198295|gb|ABM69936.1| putative NADH Dehydrogenase (complex I) subunit (chain 4) [Prochlorococcus marinus str. AS9601] Length = 513 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 171/504 (33%), Positives = 277/504 (54%), Gaps = 18/504 (3%) Query: 1 MNL---PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFV-WSVF 55 MNL P+LS + LP +G ++ F SS G ++L I+F+ + V + F Sbjct: 1 MNLESFPWLSSIILLPLVGALIMPFLSSKEGEDNTLPRNISLSFLFIDFLLIIGVLFQKF 60 Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 D SS QM+E W+ + LGVDG+S LV L+ +T +SWK I++ Y Sbjct: 61 DTSDSSLQMVERASWLPSIGLEWSLGVDGLSAPLVALSGLITFLSAAASWK-IKKKSNLY 119 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 LV S FLS D LLF++ +E L+P++++I +WGG +++YAA KF LYT Sbjct: 120 FALLLVQASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGKKKLYAATKFILYTALA 179 Query: 175 SIFMLFAIVVMCWEKKT--SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 S+ +L + + + T +I DL S+ ++ F F +K+P+FP HTWL Sbjct: 180 SLLILISGLALALSGDTFTLNITDL-TNKHVTGSLALLSYLGFLIGFGVKLPIFPLHTWL 238 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH +A S+ LAGI+LKMGGY +RF + + P AP + L +I IIY +L Sbjct: 239 PDAHGEANAPVSMLLAGILLKMGGYALLRFNVQILPEVHLQIAPALIILGIINIIYGALN 298 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+ Sbjct: 299 AFAQDNVKRRIACSSVSHMGFVLLGIGAVDALGISGAMLQMISHGLIAAAMFFVTGSFYE 358 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------ 406 R +T I GGL +P + ++A++ LPG SGFI E V + + Sbjct: 359 RTNTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEGFSSIF 418 Query: 407 NTVAVL-ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 ++ +L A+ G+VL+ +Y L + R+V FG + + +K+++ RE + + + + T+ Sbjct: 419 RSITILIAAIGLVLTPIYLLSMCRRVFFG-PRIPALATVKEMNGRELTIGFSLLLPTLVI 477 Query: 466 GIYPVPIRDTFSVPLSSIIENYTL 489 G +P + + +++ + TL Sbjct: 478 GFWPKIAINLYESSTNALSQQLTL 501 >gi|12408620|ref|NP_074953.1| NADH dehydrogenase subunit 4 [Podospora anserina] gi|128762|sp|P15582|NU4M_PODAN RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|295784|emb|CAA32645.1| ND4 gene product (AA 1 - 519) [Podospora anserina] gi|1334561|emb|CAA38806.1| NADH-ubiquinone oxidoreductase subunit 4 [Podospora anserina] Length = 519 Score = 256 bits (653), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 171/448 (38%), Positives = 279/448 (62%), Gaps = 5/448 (1%) Query: 40 ISTI-NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPF 98 I+TI N I SL ++ +FD + FQ ++ + + Y LGVDG+SI V+LTT + P Sbjct: 71 ITTIMNLIVSLIIYILFDFSTNQFQFVQDALELSVYNIY-LGVDGLSIYFVLLTTIIMPI 129 Query: 99 CILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS 158 ++S+W SI N + Y+I L+LE++++ FL LD+LLFYIFFE+ L P+F++IG++G S Sbjct: 130 ALISNWNSITHNIKAYLIIILLLETLLLAVFLVLDVLLFYIFFESILPPLFILIGLFGSS 189 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS 218 ++ A++ FLYT GS+F+L +I+ M T+ + D+ + S F ++ Q ++++ F + Sbjct: 190 NKVRASFYIFLYTLLGSLFLLLSILTMSSLIGTTYL-DVLSKSNFEYTTQIFLFLGVFIA 248 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 FA+K P ++WL AHV++P GS+ LAGI+LK+ YG R +LPL P S + +I Sbjct: 249 FAVKTPTVFLNSWLLKAHVESPLGGSIVLAGIVLKLSLYGIFRLILPLLPKISLNYTSII 308 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 F + +I IIYAS ++ DIK+LIAYSS++H IG+FS + G+EG + L HG Sbjct: 309 FSIGIITIIYASFSTLRTIDIKELIAYSSVSHAAVYLIGVFSNIIQGIEGGILLGLGHGF 368 Query: 339 VSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 VSS LF C GV+YDR TR I Y G MP ++++ + + N G P T F+GEF+ Sbjct: 369 VSSGLFICAGGVLYDRSGTRIISYYRGTAQVMPLFSILFFILCLGNCGAPLTLNFVGEFM 428 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVY 456 + F+ + + +S ++ SA Y++++Y ++ FG S + ++ + D++ RE +++ Sbjct: 429 SLYGTFERLPLLGLFSSSSMIFSAAYTIYMYNRIAFGGSFSKFFEENIGDVTKREFFLLF 488 Query: 457 PIAVLTVFFGIYPVPIRDTFSVPLSSII 484 + + T+ FGIYP I D ++S++ Sbjct: 489 TLIIFTIMFGIYPSFILDGLHYNVTSLL 516 >gi|90655405|gb|ABD96246.1| NADH dehydrogenase I chain 4 [uncultured marine type-A Synechococcus GOM 3M9] Length = 496 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 159/426 (37%), Positives = 243/426 (57%), Gaps = 13/426 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD + QM+E W+ Y L VDG+S+ LV++ L ++S +SI+ R Sbjct: 51 FDASEAGLQMVEQARWVHSIGLDYALAVDGLSLPLVLMNGMLCLVAAVAS-RSIENRPRI 109 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L++ V GAFL+ ++LLF++F+E LIP++++I +WGGS R YAA KF + T Sbjct: 110 YFALLLIISGAVNGAFLAQNLLLFFLFYELELIPLWLLIAIWGGSNRAYAATKFLIVTAV 169 Query: 174 GSIFMLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 + +L A + + T S+ + A + Q + A F IKIP+FPFHTW Sbjct: 170 SGVLILGAFLGLALVTGTMDFSLRPILA-GDLGMTAQLLLMGALLIGFGIKIPLFPFHTW 228 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A T SV LAG++LK+G YG +RF L LFP A Q AP + + I+++Y SL Sbjct: 229 LPDAHTEASTPVSVLLAGVLLKLGTYGLLRFCLGLFPEAWQVAAPWLAAWAAISVLYGSL 288 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ QTD+K+++AYSS+ HMGYV + + G+ GA+FQM+SHGL+S LF VGV+Y Sbjct: 289 AAIAQTDMKRMVAYSSVGHMGYVLLAAAAATPLGLMGALFQMVSHGLISGVLFLLVGVVY 348 Query: 352 DRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 R TRD+ GL++ +P +M++ MA+ G+PG +GFI EFL+ Q Sbjct: 349 ARTGTRDLNVLRGLLNPQRGLPLTGSLMIIGVMASAGIPGMAGFISEFLIFRGSLQPFPV 408 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFG-----VSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 +L+ G L+A+Y L L + FG + + L ++LRE+ ++ + Sbjct: 409 ATLLSMVGSGLTAVYFLLLVNRAFFGRLAIAPGEVTNPRILDPVALREQVPAIALSFGVL 468 Query: 464 FFGIYP 469 G+ P Sbjct: 469 VLGLAP 474 >gi|294646446|ref|ZP_06724087.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides ovatus SD CC 2a] gi|292638217|gb|EFF56594.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides ovatus SD CC 2a] Length = 455 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 142/400 (35%), Positives = 234/400 (58%), Gaps = 7/400 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 SY +GVDGIS+ +++L+ + +SW+ +Q +EY + F +L V G F+S+D+ Sbjct: 37 SYSVGVDGISVAMLLLSAVIVFTGTFASWR-LQPLTKEYFLWFTLLSMGVFGFFISVDLF 95 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSS 193 ++ +E +LIPM+++IGVWG + YAA K L GS F+L I+ + + T + Sbjct: 96 TMFMSYEIALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIYFGSGATTMN 155 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++++ + PF+ Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 156 LLEIAQLHNIPFAQQCIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 215 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A+ + + L+ I+++Y + + VQTD+K + AYSS++H G Sbjct: 216 LGGYGCFRIAMYLMPEAANELSWIFLILTGISVVYGAFSACVQTDLKYINAYSSVSHCGL 275 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP + Sbjct: 276 VLFAILMLNQTAATGAILQMLSHGLMTALFFALIGMIYGRTHTRDVRELAGLMKIMPFLS 335 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V ++ +AN+GLPG SGFI E + + FQN++ T+ ++A +V++A+Y L L Sbjct: 336 VCYVIAGLANLGLPGLSGFIAEMTIFVGSFQNNDVFHRTLTIIACSSIVITAVYILRLVG 395 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K+++G + +L D + ER V + V G+ P Sbjct: 396 KILYGTCTNKHHLELTDATWDERVAVICLIVCVAGLGMAP 435 >gi|154362205|ref|YP_001123777.2| NADH dehydrogenase subunit 4 [Lobularia maritima] Length = 501 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 164/498 (32%), Positives = 278/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 4 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICISILELLLTTYAFCYN-FKMDDPL 62 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++F Y LG+DG+SI ++LT F+T L+++ + N R + L Sbjct: 63 IQLSEDYKWINFFDFYWRLGIDGLSIGTILLTGFITTLATLAAFP-VTRNSRLFHFLMLA 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 122 MYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 181 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ ++I F +FA+K+P+ PFHTWLP+ H + Sbjct: 182 GVLGISLYGSNEPTLNLELLANQSYPVTLEILLYIGFLIAFAVKLPIIPFHTWLPDTHGE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 242 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 302 LKKRIAYSSVSHMGFIIIGIGSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLGY 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 362 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 422 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 480 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 481 DFVLSLASDKVESILSNY 498 >gi|119488739|ref|ZP_01621748.1| NADH dehydrogenase subunit M [Lyngbya sp. PCC 8106] gi|119455162|gb|EAW36303.1| NADH dehydrogenase subunit M [Lyngbya sp. PCC 8106] Length = 505 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 168/475 (35%), Positives = 267/475 (56%), Gaps = 16/475 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS+ ++P LG +I F L + VA ++ FI+SL + +F+ QM Sbjct: 2 LSVFIWIPLLGATIIGFWPELTA--KQARQVASLVAGSLFIWSLVLARLFNPDIPDLQMS 59 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E+ WI+ +Y+LG+DG+S+ L++L+ LT I S+ +I R Y I L + S Sbjct: 60 EFIPWIEPLGLNYYLGIDGLSLPLIILSGLLTTIAIWSTEANISRP-RLYYILILFIASG 118 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 + G FL+ ++LLF +F+E LIP++++I +WGG +R YAA KF +YT I +L + + Sbjct: 119 IAGTFLAQNLLLFLLFYEVELIPLYLLIAIWGGKKRGYAATKFLIYTAVSGILILASFLG 178 Query: 185 MCWEKKTSSIIDL-------YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + + DL ++ P + Q + F IKIP+ PFHTWLP+AHV Sbjct: 179 IVFLTSAPNF-DLEILGSGSLGIAALPMTTQLILLTGIVIGFGIKIPLVPFHTWLPDAHV 237 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A T SV LAGI+LK+G YG +RF + LFP A AP + ++++++Y + ++ QT Sbjct: 238 EASTPISVLLAGILLKLGTYGLLRFGVGLFPDAWNIVAPWMASWAVVSVLYGAFCAISQT 297 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+KK++AYSSIAHMGY+ + + + G++ QM+SHGL+S LFF VGV+Y + +R Sbjct: 298 DMKKMVAYSSIAHMGYILLAFAAATSLSLLGSVVQMVSHGLISGLLFFLVGVVYKKSGSR 357 Query: 358 DIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 D+ GL++ +P +M++ MA+ G+PG GFI EF+V +L Sbjct: 358 DLNVLRGLLNPERGLPLIGSLMILAVMASSGIPGLVGFISEFIVFRGSIAVFPVQTLLCM 417 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G L+++Y L L +V FG + V L + R+R +A++ GI P Sbjct: 418 IGTGLTSVYFLILINRVFFG-RLSDWVVNLPQVQWRDRIPAIALAIIITILGIQP 471 >gi|90655578|gb|ABD96415.1| NADH dehydrogenase I chain 4 [uncultured marine type-A Synechococcus GOM 4P21] Length = 496 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 159/426 (37%), Positives = 243/426 (57%), Gaps = 13/426 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD + QM+E W+ Y L VDG+S+ LV++ L ++S +SI+ R Sbjct: 51 FDASEAGLQMVEQARWVHSIGLDYALAVDGLSLPLVLMNGVLCLVAAVAS-RSIENRPRI 109 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L++ V GAFL+ ++LLF++F+E LIP++++I +WGGS R YAA KF + T Sbjct: 110 YFALLLIISGAVNGAFLAQNLLLFFLFYELELIPLWLLIAIWGGSNRAYAATKFLIVTAV 169 Query: 174 GSIFMLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 + +L A + + T S+ + A + Q + A F IKIP+FPFHTW Sbjct: 170 SGVLILGAFLGLALVTGTMDFSLRPILA-GDLGMTAQLLLMGALLIGFGIKIPLFPFHTW 228 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A T SV LAG++LK+G YG +RF L LFP A Q AP + + I+++Y SL Sbjct: 229 LPDAHTEASTPVSVLLAGVLLKLGTYGLLRFCLGLFPEAWQVAAPWLAAWAAISVLYGSL 288 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ QTD+K+++AYSS+ HMGYV + + G+ GA+FQM+SHGL+S LF VGV+Y Sbjct: 289 AAIAQTDMKRMVAYSSVGHMGYVLLAAAAATPLGLMGALFQMVSHGLISGVLFLLVGVVY 348 Query: 352 DRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 R TRD+ GL++ +P +M++ MA+ G+PG +GFI EFL+ Q Sbjct: 349 ARTGTRDLNVLRGLLNPQRGLPLTGSLMIIGVMASAGIPGMAGFISEFLIFRGSLQPFPV 408 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFG-----VSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 +L+ G L+A+Y L L + FG + + L ++LRE+ ++ + Sbjct: 409 ATLLSMVGSGLTAVYFLLLVNRAFFGRLAIAPGEVTNPRILDPVALREQVPAIALSFGVL 468 Query: 464 FFGIYP 469 G+ P Sbjct: 469 VLGLAP 474 >gi|193806298|sp|A4QLP7|NU4C_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 164/498 (32%), Positives = 278/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 3 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICISILELLLTTYAFCYN-FKMDDPL 61 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++F Y LG+DG+SI ++LT F+T L+++ + N R + L Sbjct: 62 IQLSEDYKWINFFDFYWRLGIDGLSIGTILLTGFITTLATLAAFP-VTRNSRLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 121 MYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ ++I F +FA+K+P+ PFHTWLP+ H + Sbjct: 181 GVLGISLYGSNEPTLNLELLANQSYPVTLEILLYIGFLIAFAVKLPIIPFHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGIGSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLGY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 361 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 421 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 480 DFVLSLASDKVESILSNY 497 >gi|296120542|ref|YP_003628320.1| proton-translocating NADH-quinone oxidoreductase, chain M [Planctomyces limnophilus DSM 3776] gi|296012882|gb|ADG66121.1| proton-translocating NADH-quinone oxidoreductase, chain M [Planctomyces limnophilus DSM 3776] Length = 559 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 159/440 (36%), Positives = 257/440 (58%), Gaps = 42/440 (9%) Query: 70 WI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI + +Y LGVDG S+ L++LT+ + I++SW SI+ + R ++ L+LE+ V+G Sbjct: 85 WIPTWNVNYSLGVDGFSLPLILLTSLIFVLSIVASW-SIKTHIRGFLFLLLLLETGVMGV 143 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 FL+LD LF++ +E L+PM+ +IG+WGG R YAA KFFLYT G + +L A++++ Sbjct: 144 FLALDFFLFFVMWEVMLLPMYFLIGLWGGPRREYAAIKFFLYTLAGGVCLLMAMLMVYSA 203 Query: 189 KKTS-SIIDLYAMSKF--------------------PFSIQYWMWIAFFCSFAIKIPMFP 227 S +++L M++ S+Q+ +++ +F IK+P P Sbjct: 204 SGGSFDLLELARMAQGQAPKPGMDLDQGIALTAAMGDTSLQWRVFVLLLIAFLIKLPAVP 263 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 HTWLP+AHV+APT S+ LAGI+LK+GGYG +R +P+ PL +A + L + ++ Sbjct: 264 LHTWLPDAHVEAPTPVSMILAGILLKLGGYGFLRIAIPICPLGFAEWAWFMVALGVFCVL 323 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGI----------------FSGMKSGVEGAMF 331 Y +L ++ Q+D K+L+AYSS++HMGYV +G+ FS M G+ A F Sbjct: 324 YGALAALAQSDFKRLVAYSSVSHMGYVLMGLGAFRFQELTGVVLNPDFSTM--GLSAATF 381 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 QM++HG+VS+ +FF VGV+YDR+ RD+ +GG+ P ++ + A +GLPG G Sbjct: 382 QMVAHGIVSAGMFFVVGVLYDRVKHRDLRQFGGIASLQPHFSAIAAGIFFAGLGLPGLCG 441 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLR 450 FIGE I SV+ +V + G++L+A Y LW ++V G + ++ L +++ R Sbjct: 442 FIGEAFSIFSVWHVDRFFSVGGALGMILTAGYILWALQRVYLGPTYTGPNREYLTEINFR 501 Query: 451 ERCMVYPIAVLTVFFGIYPV 470 E + Y + + G+YP Sbjct: 502 EYTVGYILLAFAIGLGVYPA 521 >gi|134286982|dbj|BAF50602.1| NADH dehydrogenase ND4 [Lobularia maritima] Length = 506 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 164/498 (32%), Positives = 278/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 9 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICISILELLLTTYAFCYN-FKMDDPL 67 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++F Y LG+DG+SI ++LT F+T L+++ + N R + L Sbjct: 68 IQLSEDYKWINFFDFYWRLGIDGLSIGTILLTGFITTLATLAAFP-VTRNSRLFHFLMLA 126 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 127 MYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 186 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ ++I F +FA+K+P+ PFHTWLP+ H + Sbjct: 187 GVLGISLYGSNEPTLNLELLANQSYPVTLEILLYIGFLIAFAVKLPIIPFHTWLPDTHGE 246 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 247 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 306 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 307 LKKRIAYSSVSHMGFIIIGIGSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLGY 366 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 367 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 426 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 427 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 485 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 486 DFVLSLASDKVESILSNY 503 >gi|198276159|ref|ZP_03208690.1| hypothetical protein BACPLE_02348 [Bacteroides plebeius DSM 17135] gi|198270971|gb|EDY95241.1| hypothetical protein BACPLE_02348 [Bacteroides plebeius DSM 17135] Length = 493 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 143/416 (34%), Positives = 239/416 (57%), Gaps = 8/416 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+++++L+ + +SWK ++ +EY + F +L + V G F+S D+ Sbjct: 77 YSVGVDGISVVMLLLSAIIVFTGTFASWK-LKPLTKEYFLWFTLLSTGVFGFFISTDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSI 194 ++F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + +T +I Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIYYGAGAETMNI 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ + P +Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 LEIVK-HQIPTEMQRIFFPMVFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 254 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P + + L+ I+++Y + ++VQTD+K + AYSS++H G V Sbjct: 255 GGYGCFRIAMYLMPTGAAIWGDFFLILTTISVVYGAFSAVVQTDLKYINAYSSVSHCGLV 314 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA+ QMLSHGL+++ F +G+IY R HTRDI GL+ MP AV Sbjct: 315 LFALLMMTRVSATGAILQMLSHGLMTALFFALIGMIYGRTHTRDIRQLSGLMKIMPFLAV 374 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGF+ E V + FQN + T ++A+ +V++A+Y L + K Sbjct: 375 GYVIAGLANLGLPGLSGFVAEMTVFVGSFQNPDLFHRTCTIIATMSIVITAVYILRVVGK 434 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 +++G + + +L D + ER V + + G+ P + + S + II Sbjct: 435 ILYGTCQNPEHLKLTDATWDERFAVICLIIAVAGLGLAPYWVSNVISGSVEPIISQ 490 >gi|219848525|ref|YP_002462958.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroflexus aggregans DSM 9485] gi|219542784|gb|ACL24522.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroflexus aggregans DSM 9485] Length = 503 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 148/436 (33%), Positives = 251/436 (57%), Gaps = 10/436 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 +D + FQ +E WI SY LG DGIS+ +++L + L SW +I+E +E Sbjct: 60 YDPVKGGFQFVEQLDWIPQLGISYLLGADGISLPMLLLNGIVIFTGALMSW-NIEERTKE 118 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y + L+L + V G F +LD+ LF++F+E +++PM+++IG+WG + + Y A K L+ Sbjct: 119 YWVWLLLLTTGVYGVFSALDLFLFFVFYELAVLPMYLLIGIWGSTRKEYGAMKLTLFLMA 178 Query: 174 GSIFMLFAIVVMCWEK--KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 GS ++ ++ + + +T +++ L +Q ++ A F F + MFPFHTW Sbjct: 179 GSALVIIGMIGLYFGSGLRTFNMLVLAEQGFIAGDLQRLLFPALFIGFGVLAGMFPFHTW 238 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 P HV APTA S+ AG+++K+G YGC+R + L P+ ++ + P+I ++ ++Y + Sbjct: 239 SPTGHVAAPTAVSMLHAGVLMKLGAYGCLRAAMWLMPVGARDWLPIIVIFTIFNVVYGAS 298 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG-VI 350 ++MVQ D K +I YSS++HMG V + + SG + + GA+ QM +HG++++ F VG +I Sbjct: 299 IAMVQRDAKFIIGYSSVSHMGLVVMALASGTQIALMGAVLQMFAHGIMTALFFAVVGRMI 358 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVF-TMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 YDR HTR + GGL MP +AV M + +++MG+PG +GF EF + + V++ V Sbjct: 359 YDRTHTRQLPELGGLGRVMP-FAVTMFILGGLSSMGMPGLAGFWAEFNIFIGVWERYPLV 417 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 AV+A+ + ++ Y L V + K + L L+ +E +AV+ V G+YP Sbjct: 418 AVIAALSIPITGAYILRAVWSVFYDEVKNPEFLHLPKLTWQEYSGALILAVVLVGLGLYP 477 Query: 470 ---VPIRDTFSVPLSS 482 + DT PL++ Sbjct: 478 SWMTELIDTAVRPLAA 493 >gi|13518487|ref|NP_084845.1| NADH dehydrogenase subunit 4 [Lotus japonicus] gi|17433137|sp|Q9BBP3|NU4C_LOTJA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|13359028|dbj|BAB33245.1| NADH dehydrogenase ND4 [Lotus japonicus] Length = 497 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 151/442 (34%), Positives = 250/442 (56%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L++V LP G +I + G ++ V I I+ + + + + F Sbjct: 5 PWLTLVVILPIAGGSLIFLFPHRGNKVIRWYTVC--ICLIDLLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI++F Y G+DG+SI ++LT F+T L++ + I + + L + Sbjct: 63 QLTESYKWINFFDFYWRFGIDGLSIGPILLTGFITTLATLAA-QPITRECKLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L A Sbjct: 122 YSGQIGPFSSRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGSSVFLLMA 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + ++ ++ +P +++ ++I F +FA+K P+ P HTWLP+ H +A Sbjct: 182 TLGIGLYGSNEPTLNFETLNNQSYPLALEIIVYIGFLIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + LF A F P + L I IIYA+ S+ Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSIQIIYAASASLGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDRL + Sbjct: 302 KKRIAYSSVSHMGFLIIGIGSISDTGLNGAILQIISHGFIGAALFFLSGTSYDRLRLLYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ V + +MA++ LPG SGF E +V + + + + Sbjct: 362 DEMGGMALPMPKIFTVFTILSMASLALPGMSGFFAELIVFWGIITSQKYFLIMKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 TAIGMILTPIYSLSILRQMFYG 443 >gi|327313386|ref|YP_004328823.1| proton-translocating NADH-quinone oxidoreductase subunit M [Prevotella denticola F0289] gi|326945758|gb|AEA21643.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella denticola F0289] Length = 489 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 141/401 (35%), Positives = 236/401 (58%), Gaps = 7/401 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++ +GVDGIS+++++L+ + +SW+ ++ +EY + F++L S V G F+S DM Sbjct: 63 AFSVGVDGISVVMILLSAVIVFTGTFASWQ-LEPMKKEYFLWFVLLASGVFGFFISTDMF 121 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + Y+A K L GS ++ I+ + + T Sbjct: 122 TMFMFYEVALIPMYLLIGVWGTGPKEYSAMKLTLMLMGGSALLILGILGIYYFSGATTMD 181 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +L M P + Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 182 VTELARMHAMPKNAQNIFFPFVFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 241 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC+R + L P A Q +APV L+ I+++Y +L + VQTD+K + AYSS++H G Sbjct: 242 LGGYGCLRIAMFLMPDALQTWAPVFLVLTTISVVYGALSACVQTDLKYINAYSSVSHCGM 301 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F C+G+IY R TRD+ GGL+ +P A Sbjct: 302 VLFALLMMTQTAITGAILQMLSHGLMTALFFACIGMIYHRAGTRDVRYLGGLMKVIPFLA 361 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS----NTVAVLASFGVVLSALYSLWLYR 429 V +V +AN+GLPG SGF+ E + + F+N+ +++ +V++A+Y L + Sbjct: 362 VSYVVAGLANLGLPGFSGFVAEMTIFVGSFENAGMFHRVATIISCTAIVITAVYILRVVG 421 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 K++F +K +L D + ER V + G+ P+ Sbjct: 422 KILFQAIPNKKFYELHDATWDERFAVGALIFCVAGLGLCPL 462 >gi|282860270|ref|ZP_06269340.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella bivia JCVIHMP010] gi|282586944|gb|EFB92179.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella bivia JCVIHMP010] Length = 489 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 139/401 (34%), Positives = 237/401 (59%), Gaps = 7/401 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++ +GVDGIS+++++L+ + +SW+ ++ +EY + F++L V G F+S+DM Sbjct: 63 AFAIGVDGISVVMILLSAVIVFTGTFASWQ-LEPMKKEYFLWFVLLSIGVFGFFISIDMF 121 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + Y+A K L GS ++ I+ + + T + Sbjct: 122 TMFMFYEVALIPMYLLIGVWGTGPKEYSAMKLTLMLMGGSALLVLGILGIYYFSGASTMN 181 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 +++L M P + Q + F F I +FPFHTW P+ H APTA S+ AG+++K Sbjct: 182 VLELAKMHAMPLAAQNVFFPFVFIGFGILGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 241 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC+R + L P A +APV L+ I+++Y +L + VQTD+K + AYSS++H G Sbjct: 242 LGGYGCLRIAMFLMPDALTMWAPVFLVLTCISVVYGALSACVQTDLKYINAYSSVSHCGM 301 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F C+G+IY R TRD+ GGL+ +P A Sbjct: 302 VLFALVMTTQTAITGAILQMLSHGLMTALFFACIGMIYHRAGTRDVRYLGGLMKVIPFLA 361 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS----NTVAVLASFGVVLSALYSLWLYR 429 V ++ +AN+GLPG SGF+ E + + FQN+ +++ +V++A+Y L + Sbjct: 362 VSYVIAGLANLGLPGFSGFVAEMTIFVGAFQNAGMFHRVATIISCTAIVITAVYILRVVG 421 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 K++F K +L D + ER + + G++P+ Sbjct: 422 KILFQKVANPKFLELHDATWDERFAIGGLIFCVAGLGLFPL 462 >gi|320529340|ref|ZP_08030428.1| putative NAD(P)H-quinone oxidoreductase subunit D4 [Selenomonas artemidis F0399] gi|320138306|gb|EFW30200.1| putative NAD(P)H-quinone oxidoreductase subunit D4 [Selenomonas artemidis F0399] Length = 510 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 160/500 (32%), Positives = 272/500 (54%), Gaps = 23/500 (4%) Query: 3 LPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 +P LSI+ +LP +I L L R A+ T+ + L V++ +D R Sbjct: 4 VPVLSIILWLPLAAACIIALLPGGLHSTIRRLSAAAM---TLTLLLILHVYANYDLMRGG 60 Query: 62 FQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q EY W+ D +Y LGVDGIS+ +++L+ + + SSW +++ +EY + L+ Sbjct: 61 MQFTEYVPWVTDLGVAYALGVDGISLPMLLLSGVVGLAAVFSSWH-VEKRVKEYFVLLLI 119 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI---YAAYKFFLYTFFGSIF 177 + V GAFL DM LF + E ++P ++++ +WG SER+ +AA K ++ GS F Sbjct: 120 VIGGVTGAFLVRDMFLFLVLCEMVVVPAYLMVLIWGSSERVSKEHAAMKMTVFLLVGSAF 179 Query: 178 MLFAIVVM---CWEKKTSSIIDLYAMSK------FPFSIQYWMWIAFFCSFAIKIPMFPF 228 ML ++++ +E + D A++ P+ +Q ++ F + MFP Sbjct: 180 MLLGVLLLYVSAYETGMRTF-DFEALAMAATAGYIPWEVQVTAFLLLLVGFGSHLSMFPL 238 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H W P+ + APTA S+ AG++ K+GGY IR + + PL ++++APVI L++I ++Y Sbjct: 239 HIWSPDGYAGAPTAISMINAGVLKKIGGYALIRIGIFILPLGAKFWAPVIAVLAMINVVY 298 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 AS +++ Q DIK +IAYSS++HMGYV +G + V GA+ M++HG++ + F +G Sbjct: 299 ASYIALAQRDIKYMIAYSSVSHMGYVLLGFAALNAVSVSGAVAYMVAHGIMLALFFSQIG 358 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 IYD+ R I GL H+ P V M+ + ++GLPG GFI EF + + V + Sbjct: 359 YIYDKTDLRSIGDLWGLAHHRPHITVGFMLAGLCSLGLPGLIGFIPEFTIFVGVMEVYPV 418 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 +AV++ G+V +A Y L + +V+FG + E+ + D + ++ + V V G++ Sbjct: 419 IAVVSVSGIVFTAFYVLRMLARVLFG-PRTERFTAIPDTQKIDLAPLFVLGVFLVGLGVF 477 Query: 469 P---VPIRDTFSVPLSSIIE 485 P + + D+ PL + E Sbjct: 478 PGLLMNVVDSGVAPLVPLFE 497 >gi|145259864|ref|NP_054988.2| NADH dehydrogenase subunit 4 [Spinacia oleracea] Length = 501 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 167/498 (33%), Positives = 276/498 (55%), Gaps = 19/498 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRSS 61 P+L+ + LP F G + LF G + + IS I + +V+ F Sbjct: 6 PWLTTIVVLPIFAGSLIFLFPHR---GNKVIRWYTICISMIELLLMTYVFFYHFQPDDPL 62 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI ++LT F+T L++W + N + + L Sbjct: 63 IQLVEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRNSQLFHFLMLA 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 MYSAQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 181 Query: 181 AIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + ++L + +P +++ +I FF +FA+K+P+ P HTWLP+ H + Sbjct: 182 GVLGVGLYGSNEPTLNLETLVNQSYPVALEIIFYIGFFIAFAVKLPIIPLHTWLPDTHGE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S Q + Sbjct: 242 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIIGTMQIIYAASTSPGQRN 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 302 LKKRIAYSSVSHMGFIIIGISSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV---LASF 415 + GG+ MP+ + F+MA++ LPG SGFI E +V + + + + L +F Sbjct: 362 LDEMGGIAIPMPKIFTLFSSFSMASLALPGMSGFIAELIVFFGLITSQKYLLIPKLLITF 421 Query: 416 ----GVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 G++L+ +Y L + R++ +G K + D RE + I + + G+YP Sbjct: 422 GMAIGMILTPIYLLSMSRQMFYGY-KLFNISNSSFFDSGPRELFVSTSIFLPVIGIGVYP 480 Query: 470 VPIRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 481 DLVLSLSVEKVEAILSNY 498 >gi|88809586|ref|ZP_01125093.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. WH 7805] gi|88786336|gb|EAR17496.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. WH 7805] Length = 523 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 150/424 (35%), Positives = 236/424 (55%), Gaps = 11/424 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD S Q++E W+ + LG DG+S LVVL+ +T + +SW ++ R Sbjct: 69 FDPTSSELQLVERVSWLPVIGLEWSLGADGLSAPLVVLSGLVTLLSVAASW-NVTHKSRL 127 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV S FLS D LLF++ +E L+P++++I +WGG R YAA KF LYT Sbjct: 128 YFGLLLVQASAQGLVFLSQDFLLFFLAWELELVPVYLLIAIWGGQNRQYAATKFILYTAL 187 Query: 174 GSIFMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 S+ +L + + + T ++ ++ A S ++ F F +K+PMFP HTWL Sbjct: 188 ASLLILISGLALALSGDTFTLNLNELAQRSPGGSFGLLCYLGFLVGFGVKLPMFPLHTWL 247 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH +A S+ LAG++LKMGGY +RF + + P A AP + L ++ I+Y +L Sbjct: 248 PDAHGEANAPVSMLLAGVLLKMGGYALLRFNVQMLPDAHLVMAPALIILGIVNIVYGALN 307 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q ++K+ IA SS++HMG+V +GI + + GAM QM+SHGL+++A+FF G Y+ Sbjct: 308 AFAQDNVKRRIACSSVSHMGFVLLGIGAVDALSISGAMLQMISHGLIAAAMFFVTGCFYE 367 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----- 407 R T I GGL +P + ++A++ LPG SGFI E V + + + Sbjct: 368 RTKTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGFISEITVFLGITSQESFTTLF 427 Query: 408 --TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 T VLA+ G+VL+ +Y L + R+V FG + + ++D+ RE + + V T+ Sbjct: 428 RVTTIVLAAIGLVLTPIYLLSMCRRVFFG-PRIPALAFVEDMRPRELVIGLTLLVPTLVI 486 Query: 466 GIYP 469 GI+P Sbjct: 487 GIWP 490 >gi|17433728|sp|Q9M3J0|NU4C_SPIOL RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 167/498 (33%), Positives = 276/498 (55%), Gaps = 19/498 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRSS 61 P+L+ + LP F G + LF G + + IS I + +V+ F Sbjct: 5 PWLTTIVVLPIFAGSLIFLFPHR---GNKVIRWYTICISMIELLLMTYVFFYHFQPDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI ++LT F+T L++W + N + + L Sbjct: 62 IQLVEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRNSQLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSAQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + ++L + +P +++ +I FF +FA+K+P+ P HTWLP+ H + Sbjct: 181 GVLGVGLYGSNEPTLNLETLVNQSYPVALEIIFYIGFFIAFAVKLPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIIGTMQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGISSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV---LASF 415 + GG+ MP+ + F+MA++ LPG SGFI E +V + + + + L +F Sbjct: 361 LDEMGGIAIPMPKIFTLFSSFSMASLALPGMSGFIAELIVFFGLITSQKYLLIPKLLITF 420 Query: 416 ----GVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 G++L+ +Y L + R++ +G K + D RE + I + + G+YP Sbjct: 421 GMAIGMILTPIYLLSMSRQMFYGY-KLFNISNSSFFDSGPRELFVSTSIFLPVIGIGVYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 480 DLVLSLSVEKVEAILSNY 497 >gi|114107096|ref|YP_740252.1| NADH-plastoquinone oxidoreductase subunit 4 [Liriodendron tulipifera] gi|122227463|sp|Q0G9G9|NU4C_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|113201044|gb|ABI32559.1| NADH-plastoquinone oxidoreductase subunit 4 [Liriodendron tulipifera] Length = 500 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 163/499 (32%), Positives = 269/499 (53%), Gaps = 15/499 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP I F + G ++ + + + + F + F Q Sbjct: 5 PWLTIIVVLPIFAGSSIFFFPHRGNKVVRWYTICICLLELLLTTYAFCYH-FQLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI+ F + LG+DG+SI ++LT F+T L++ + + + R + L + Sbjct: 64 LEEDYKWINIFDFHWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 M I++ A +P +++ + F ++A+K P+ P HTWLP+ H +A Sbjct: 183 PGMGLYGSNEPILNFETSANQSYPLALEIIFYFGFLIAYAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q+++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSSGQSNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG+ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFTIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAESVVFWGIITSPKYLLMPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G K V D RE + I + + GIYP Sbjct: 423 AIGMILTPIYSLSMSRQMFYGY-KLFNVPNSYFLDSGPRELFVSICIFLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENYTLK 490 + + +I+ NY K Sbjct: 482 VLSLSVDKVEAILANYFYK 500 >gi|67923351|ref|ZP_00516833.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Crocosphaera watsonii WH 8501] gi|67854823|gb|EAM50100.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Crocosphaera watsonii WH 8501] Length = 499 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 174/470 (37%), Positives = 265/470 (56%), Gaps = 10/470 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS + +P +G I F + G SF+ +AL ++ + +L + FD S Q Sbjct: 2 LSALIIIPLIGAIFIAF--FPGKKTSSFYRFLALICTSALLVLTLILGFKFDINNPSMQF 59 Query: 65 IEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 E WI D +YHLG+DG+S L+ + + LT I +S K+I+ + + Y L+L Sbjct: 60 SENIPWIIDIGLNYHLGLDGLSFPLIFINSLLTLITIYTSSKTIERS-QFYYALILILNC 118 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 V GAFL+ D+LLF+ F+E +IP++ +I +WGG++R YAA KF LYT +L + + Sbjct: 119 GVSGAFLAQDVLLFFFFYELEIIPLYFLIAIWGGAKRGYAAMKFLLYTAISGFLVLGSFL 178 Query: 184 VMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + W S+ + P S Q + I AIKIP+FP HTWLP+AHV+A T Sbjct: 179 GLVWLSGASTFDYEPLRSHNLPLSTQLLLLIPLLIGLAIKIPIFPLHTWLPDAHVEASTP 238 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 SV LAG++LK+G YG +RF + LF A Y AP + L+ I+ +Y + ++VQ D+KK+ Sbjct: 239 VSVLLAGVLLKLGTYGLLRFGVGLFFDAWTYIAPWLATLAAISALYGASCAIVQKDMKKV 298 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 +AYSSIAHM Y+ + + + A FQM+SHGL+S+ LF VG++Y++ +RD+ Sbjct: 299 VAYSSIAHMAYILLAAAAATHLSITAATFQMVSHGLISAMLFLVVGIVYEKTGSRDVDFL 358 Query: 363 GGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL++ +P +M++ MA+ G+PG GF+ EFLV F +L G L Sbjct: 359 RGLLNPQRGLPITGSLMILGVMASAGIPGLVGFVAEFLVFRGSFPIFPVQTLLCLVGSGL 418 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +A+Y L + KV FG E + Q+ + ER + +A+L V GI P Sbjct: 419 TAVYFLLMVNKVFFGRLTPE-LSQIPKVLWTERLPAFILAILIVVLGIQP 467 >gi|123965894|ref|YP_001010975.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9515] gi|123200260|gb|ABM71868.1| putative NADH Dehydrogenase (complex I) subunit (chain 4) [Prochlorococcus marinus str. MIT 9515] Length = 512 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 165/487 (33%), Positives = 269/487 (55%), Gaps = 24/487 (4%) Query: 1 MNL---PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFVW-SVF 55 MNL P+LS + LP +G ++ F + G ++LG I+F+ + V F Sbjct: 1 MNLESFPWLSSIVLLPLIGALIMPFLKTNEGEDNSLPRNISLGFLFIDFLLIVGVLLQKF 60 Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 D SS Q++E W+ + LGVDG+S L+ L+ +T +SWK +++ Y Sbjct: 61 DNTDSSLQLLERLSWLPSIGLEWSLGVDGLSAPLIALSGLITFLSAAASWK-VKKKANLY 119 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 LV S FLS D LLF++ +E L+P++++I +WGG +R+YAA KF LYT Sbjct: 120 FALLLVQASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGKKRLYAATKFILYTALA 179 Query: 175 SIFMLFAIVVMCWEKKT-----SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 S+ +L + + + T S + + +A S+ ++ F F +K+P+FP H Sbjct: 180 SLLILISGLALALSGDTFTLNLSELTNKHAQG----SLALLSYLGFLIGFGVKLPIFPLH 235 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+AH +A S+ LAGI+LKMGGY +RF + + P AP + L +I IIY Sbjct: 236 TWLPDAHGEANAPVSMLLAGILLKMGGYALLRFNVQILPEVHLKLAPALIILGIINIIYG 295 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 +L + Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Sbjct: 296 ALNAFAQDNVKRRIACSSVSHMGFVLLGIGAVDALGISGAMLQMISHGLIAAAMFFVTGS 355 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS--- 406 Y+R +T I GGL +P + ++A++ LPG SGFI E V + + Sbjct: 356 FYERTNTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEGFS 415 Query: 407 ---NTVAVL-ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 ++ +L A+ G+VL+ +Y L + R+V FG + + +K+++ RE + + + + T Sbjct: 416 SLFRSITILIAAIGLVLTPIYLLSMCRRVFFG-PRIPALASVKEMNGRELTIGFSLLLPT 474 Query: 463 VFFGIYP 469 + G +P Sbjct: 475 LVIGFWP 481 >gi|32480895|ref|NP_862805.1| NADH dehydrogenase subunit 4 [Calycanthus floridus var. glaucus] gi|68052690|sp|Q7YJT3|NU4C_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|32399431|emb|CAD28772.1| NdhD protein [Calycanthus floridus var. glaucus] Length = 502 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 159/497 (31%), Positives = 265/497 (53%), Gaps = 15/497 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+++ LP I F Y G + + I + + + + + F Sbjct: 5 PWLTVIVVLPISAGSSIFFVPYRGNKNKVIRWYTICICLLEILLTTYAFCYHFQSDDPLI 64 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI F + G+DG+SI ++LT F+T L++ + + + R + L + Sbjct: 65 QLEEAYKWIHIFDFHWRPGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLFHFLMLAM 123 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S +G+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 124 YSGQVGSFSSRDLLLFFLMWELELIPVYLLLSMWGGKKRMYSATKFILYTAGGSIFLLMG 183 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + M ++ ++ +P ++ + F ++A+K P+ P HTWLP+ H +A Sbjct: 184 VSGMGLYGSNEPTLNFETLANQSYPLGLEIIFYFGFLIAYAVKSPIIPLHTWLPDTHGEA 243 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 244 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLVIVGAIQIIYAASTSFGQRNF 303 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG+ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 304 KKRIAYSSVSHMGFTLIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 363 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + +S ++ + Sbjct: 364 DEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGIITSSKYLLMPKIVISFV 423 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+ +YSL + R++ +G K V D RE + I + V GIYP Sbjct: 424 MAIGMILTPIYSLSMLRRMFYGY-KLFNVPDFYFLDSGPRELFVSICIFLPVVGIGIYPD 482 Query: 471 PIRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 483 FVLSLSVDRVEAILSNY 499 >gi|315108832|gb|EFT80808.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL030PA2] Length = 497 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 153/478 (32%), Positives = 265/478 (55%), Gaps = 16/478 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+++ LPF+G + + G R+ + S + + ++ + V G + Sbjct: 1 MSFPILTVIALLPFVGGVITMM--LRGAAARA---TGMVFSLVTLVLGVYAFIV---GVN 52 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAF 118 + E + WI + Y LG DG+S+ +++L L P +L+ W E R AF Sbjct: 53 GTNLSETHRWIRAVGAWYALGGDGLSLTMILLVVILVPVVLLAEWHVGDDETARWSTGAF 112 Query: 119 ----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L+LE + I F + D+LLFY+ FEA+LIPM+ +I WGG R AA KF LY+ G Sbjct: 113 FGLALMLEGLAIYCFAATDVLLFYLMFEATLIPMYFLIAGWGGPRRGRAAMKFLLYSLAG 172 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + MLFA++ + + + DL A F +I +++ FF +FAIK PM P HTWLP+ Sbjct: 173 GLVMLFAVIGVGVHGGSFLLSDL-AKVDFSGAIGKELFVGFFIAFAIKAPMVPVHTWLPD 231 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 QA S L G++ K+G +G +R L LFP AS + P + L++I++++ ++++ Sbjct: 232 TAEQATAGASSLLVGLLDKIGTFGTLRLCLGLFPAASDWATPFVLTLAIISVLWGAMMAA 291 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 +D+ + ++Y+S++H G++ IGIF+ + + G++F M +HG ++ALF +G + R Sbjct: 292 TSSDLMRFVSYTSVSHFGFMVIGIFALTTTSITGSIFYMFNHGFSTAALFLVLGFLVRRG 351 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T + YGG+ P A + +A + LPGT F+ EF+ + + +++ Sbjct: 352 GTAKVDGYGGVQKVAPVLAGTFLFAGLATLSLPGTGNFVSEFMALAGAWSRHPIYVAIST 411 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 G+VL+A+Y L YR+ + G + +Q+ DL+ RE+ ++ P+ +L + FG +P P+ Sbjct: 412 IGMVLAAVYVLVTYRRTMTGPVQGVS-EQVSDLNGREKLVLAPLIILLLVFGFFPRPM 468 >gi|292655147|ref|YP_003535044.1| NADH dehydrogenase-like complex subunit M [Haloferax volcanii DS2] gi|291372111|gb|ADE04338.1| NADH dehydrogenase-like complex subunit M [Haloferax volcanii DS2] Length = 509 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 169/490 (34%), Positives = 268/490 (54%), Gaps = 39/490 (7%) Query: 9 VTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK-------GRSS 61 VTFL L FV L Y G A +S + SL++W +D G + Sbjct: 9 VTFLAALVTFV-LPDRYAGK-------AAFALSLAPVVGSLYMWQQYDASGNALLGGNIA 60 Query: 62 FQM-IEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 F+ I + Y + +GVDGIS+ LVVLTT LT I+S+W I E ++ L+ Sbjct: 61 FETDIAWLQLGQYDIHWMVGVDGISMPLVVLTTVLTTLAIVSAWTPISERQSQFFGLMLL 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 +E+ ++G F +LD +++IF+EA L+PM+ +IGVWGG R YAA KFF+YT S+ M Sbjct: 121 MEANLLGVFTALDFFVWFIFWEAVLLPMYFLIGVWGGPRRKYAAIKFFVYTNIASLVMFI 180 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM----------------WIAFFCSFAIKIP 224 + + + S I + + + ++Q ++A F FA+K+P Sbjct: 181 GFISLVFGLGDS--ISSFRLPEIAQALQAGQLGSFAGLSAGALASVAFVAMFFGFAVKVP 238 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + P HTWLP+AHV+APT SV LAG++LKMG Y +RF + P ++ FA I L++ Sbjct: 239 VAPLHTWLPDAHVEAPTPVSVMLAGVLLKMGTYALLRFNFTMLPETARAFALPIALLAVA 298 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 ++IY +L+++ Q D+K+++AYSS++ MGYV +G+ + GV GA FQM++HGL+S +F Sbjct: 299 SVIYGALLALAQQDLKRIVAYSSVSSMGYVILGLIAYTTYGVGGATFQMVAHGLISGLMF 358 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 VGVIY+ HTR + G+ MP A + + MGLP +GF EF + F+ Sbjct: 359 MAVGVIYNTTHTRMVSDMSGIADRMPVTAGIFVAGAFGYMGLPLMAGFAAEFFIFKGAFE 418 Query: 405 NSNTVAV-----LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIA 459 ++ A+ A FG+V+ A Y L+ ++ +FG + + + + + + + Sbjct: 419 STVMEAMPLFTGAAMFGIVIVAGYLLFAMQRTLFGPFRFDGDYDITEAPFHDVAPLAVLL 478 Query: 460 VLTVFFGIYP 469 +LT+ G+ P Sbjct: 479 LLTIVLGVSP 488 >gi|316935774|ref|YP_004110756.1| proton-translocating NADH-quinone oxidoreductase subunit M [Rhodopseudomonas palustris DX-1] gi|315603488|gb|ADU46023.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris DX-1] Length = 480 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 162/465 (34%), Positives = 252/465 (54%), Gaps = 17/465 (3%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW--SVFDKGRSSFQMIEYY 68 LP G V F++ G G R + + I+T + L + + D+GR ++ Y Sbjct: 8 LLPAFGGLVAFFAA--GKGERERW---ITIATFALMLVLLIAIVATGDEGRWYDKV--SY 60 Query: 69 HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 W+ F S +DG+S +V L L +++SW I+ + + + +G Sbjct: 61 PWVPSFGISLEFAIDGLSAAMVALAAGLGIISVMASWSEIRTQSGLFHASLCWTVAASVG 120 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF---FGSIFMLFAIVV 184 FLS D+L+F F+EA L+P F +I VWG ++ AA KF ++ FG + FA+ Sbjct: 121 VFLSFDLLIFAFFWEAMLVPAFTLIAVWGHGDKEGAALKFLIFNAVAGFGLLAASFALAA 180 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 M + T S +L M K +Q WM + F +F +K+ + PFH WLP AH APTAGS Sbjct: 181 MA-DHMTFSAFELAEM-KLSTPVQVWMLLGFSLAFMVKLSVPPFHAWLPEAHTLAPTAGS 238 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LAG++LK G YG RF LFP +P L +Y LV+ Q D K+L+A Sbjct: 239 ILLAGLLLKTGAYGLFRFAPMLFPDGLAAVSPYGIALGAAGALYGGLVACGQNDAKRLVA 298 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 Y+SIAHM V +GI +G+ + GA +M++H +SALF +G +Y+R HTRD+ GG Sbjct: 299 YTSIAHMSIVLMGISAGVHYALAGAAVEMIAHSFSASALFLLIGALYERTHTRDLRQLGG 358 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L P++A +F A + LPGT+ F+GE LV++ +FQ + A+LA +V+S +Y+ Sbjct: 359 LQQTAPKFAAAFALFCSALLALPGTANFVGEALVVVGIFQVNWVFALLALSTLVVSVIYA 418 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L + +VFG+ + + L D++ RE + + + T+ G+YP Sbjct: 419 TRLLKGLVFGLPQPKP--PLADMTWREYWPILVMGIGTLIVGLYP 461 >gi|325269270|ref|ZP_08135888.1| NADH-quinone oxidoreductase subunit M [Prevotella multiformis DSM 16608] gi|324988397|gb|EGC20362.1| NADH-quinone oxidoreductase subunit M [Prevotella multiformis DSM 16608] Length = 503 Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 141/401 (35%), Positives = 236/401 (58%), Gaps = 7/401 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++ +GVDGIS+++++L+ + +SW+ ++ +EY + F++L S V G F+S DM Sbjct: 77 AFSVGVDGISVVMILLSAVIVFTGTFASWQ-LEPMKKEYFLWFVLLASGVFGFFISTDMF 135 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + Y+A K L GS ++ I+ + + T Sbjct: 136 TMFMFYEVALIPMYLLIGVWGTGPKEYSAMKLTLMLMGGSALLILGILGIYYFSGATTMD 195 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +L M P + Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 196 VTELARMHAMPKNAQNIFFPFVFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 255 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC+R + L P A Q +APV L+ I+++Y +L + VQTD+K + AYSS++H G Sbjct: 256 LGGYGCLRIAMFLMPDALQTWAPVFLVLTTISVVYGALSACVQTDLKYINAYSSVSHCGM 315 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F C+G+IY R TRD+ GGL+ +P A Sbjct: 316 VLFALLMMTQTAITGAILQMLSHGLMTALFFACIGMIYHRAGTRDVRYLGGLMKVIPFLA 375 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS----NTVAVLASFGVVLSALYSLWLYR 429 V +V +AN+GLPG SGF+ E + + F+N+ +++ +V++A+Y L + Sbjct: 376 VSYVVAGLANLGLPGFSGFVAEMTIFVGSFENAGMFHRVATIISCTAIVITAVYILRVVG 435 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 K++F +K +L D + ER V + G+ P+ Sbjct: 436 KILFQAIPNKKFYELHDATWDERFAVGALIFCVAGLGLCPL 476 >gi|307566082|ref|ZP_07628540.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella amnii CRIS 21A-A] gi|307345270|gb|EFN90649.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella amnii CRIS 21A-A] Length = 503 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 142/402 (35%), Positives = 237/402 (58%), Gaps = 9/402 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR-EYMIAFLVLESMVIGAFLSLDM 134 ++ +GVDGIS+++++L+ + +SW+ QE + EY + F++L V G F+S+DM Sbjct: 77 AFAVGVDGISVVMILLSAVIVFTGTFASWQ--QEPMKKEYFLWFVLLSIGVFGFFISIDM 134 Query: 135 LLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTS 192 ++F+E +LIPM+++IGVWG + Y+A K L GS ++ I+ + + T Sbjct: 135 FTMFMFYEVALIPMYLLIGVWGTGAKEYSAMKLTLMLMGGSALIILGILGIYYFSGSSTM 194 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++L M P +Q + F F + +FPFHTW P+ H APTA S+ AG+++ Sbjct: 195 NVLELAKMHAMPVKMQNIFFPFVFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLM 254 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYGC+R + L P A +APV L+ I+I+Y +L + VQTD+K + AYSS++H G Sbjct: 255 KLGGYGCLRIAMFLMPDALTVWAPVFLVLTTISIVYGALSACVQTDLKYINAYSSVSHCG 314 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + ++ + GA+ QMLSHGL+++ F C+G+IY R TRD+ GGL+ +P Sbjct: 315 MVLFALVMTTQTSITGAILQMLSHGLMTALFFACIGMIYHRAGTRDVRYLGGLMKVIPFL 374 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS----NTVAVLASFGVVLSALYSLWLY 428 AV ++ +AN+GLPG SGF+ E + + F N+ ++A +V++A+Y L + Sbjct: 375 AVSYVIAGLANLGLPGFSGFVAEMTIFVGSFHNAGMFHRVATIVACTAIVITAVYILRVV 434 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 K++F +K +L D S ER + + G++P+ Sbjct: 435 GKILFQKVANDKFFKLHDASWDERLAIGGLIFCVAGLGMFPI 476 >gi|313821256|gb|EFS58970.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL036PA1] gi|313822289|gb|EFS60003.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL036PA2] gi|314926002|gb|EFS89833.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL036PA3] Length = 497 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 157/504 (31%), Positives = 273/504 (54%), Gaps = 17/504 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+++ LPF+G + + G R+ + S + + ++ + V G + Sbjct: 1 MSFPILTVIALLPFVGGVITMM--LRGAAARA---TGMVFSLVTLVLGVYAFIV---GVN 52 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAF 118 + E + WI + Y LG DG+S+ +++L L P +L+ W E R AF Sbjct: 53 GTNLSETHRWIRAVGAWYALGGDGLSLTMILLVVILVPVVLLAEWHVGDDETARWSTGAF 112 Query: 119 ----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L+LE + I F + D+LLFY+ FEA+LIPM+ +I WGG R AA KF LY+ G Sbjct: 113 FGLALMLEGLAIYCFAATDVLLFYLMFEATLIPMYFLIAGWGGPRRGQAAMKFLLYSLAG 172 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + MLFA++ + + + DL A F +I +++ FF +FAIK PM P HTWLP+ Sbjct: 173 GLVMLFAVIGVGVHGGSFLLSDL-AKVDFSGAIGKELFVGFFIAFAIKAPMVPVHTWLPD 231 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 QA S L G++ K+G +G +R L LFP AS + P + L++I++++ ++++ Sbjct: 232 TAEQATAGASSLLVGLLDKIGTFGMLRLCLGLFPAASDWATPFVLTLAIISVLWGAMMAA 291 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 +D+ + ++Y+S++H G++ IGIF+ + + G++F M +HG ++ALF +G + R Sbjct: 292 TSSDLMRFVSYTSVSHFGFMVIGIFALTTTSITGSIFYMFNHGFSTAALFLVLGFLVRRG 351 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T + YGG+ P A + +A + LPGT F+ EF+ + + +++ Sbjct: 352 GTAKVDGYGGVQKVAPVLAGTFLFAGLATLSLPGTGNFVSEFMALAGAWSRHPIYVAIST 411 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 G+VL+A+Y L YR+ + G + +Q+ DL+ RE+ ++ P+ +L + FG +P P+ Sbjct: 412 IGMVLAAVYVLVTYRRTMTGPVQGVS-EQVSDLNGREKLVLAPLIILLLVFGFFPRPMLH 470 Query: 475 TFSVPLSSIIENYTLKTGYSDSVK 498 P ++ + T + VK Sbjct: 471 AIE-PAATATKTQVHATDPAPVVK 493 >gi|333031506|ref|ZP_08459567.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides coprosuis DSM 18011] gi|332742103|gb|EGJ72585.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides coprosuis DSM 18011] Length = 493 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 145/413 (35%), Positives = 245/413 (59%), Gaps = 10/413 (2%) Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q IE+Y ++ C Y +GVDGIS+++++L + + + +SWK ++E +EY + + +L Sbjct: 65 QSIEWYKPLN-IC-YAVGVDGISVVMLLLASVIVFTGVFASWK-MKEQTKEYFLWYTLLS 121 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 V G F+S+D+ ++F+E +LIPM+++IGVWG ++ Y+A K L S F+LF I Sbjct: 122 MGVFGFFISIDLFTMFMFYEIALIPMYLLIGVWGTGKKEYSAMKLTLMLMGASAFLLFGI 181 Query: 183 VVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + +S+ +L + P +Q + F F + +FPFHTW P+ H AP Sbjct: 182 LGIYFGAGATSM-NLLEIGGLHIPIEMQRIFFPMTFLGFGVLGALFPFHTWSPDGHASAP 240 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 TA S+ AG+++K+GGYGC R + L P A+Q + + L+ I+++Y + + VQTD+K Sbjct: 241 TAVSMLHAGVLMKLGGYGCFRVAMYLMPEAAQELSWIFLILTGISVVYGAFSACVQTDLK 300 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 + AYSS++H G V I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ Sbjct: 301 YINAYSSVSHCGLVLFAILMMTQTAATGAVLQMLSHGLITALFFALIGMIYGRTHTRDVR 360 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFG 416 GL+ MP +V ++ +AN+GLPG SGF+ E + + F+N++T +LA+ Sbjct: 361 ELRGLMKIMPFLSVCYVIAGLANLGLPGFSGFVAEMTIFVGSFENTDTFHRVFTILATSS 420 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +V++A+Y L L + ++G + + L D S E+ V + + V G +P Sbjct: 421 IVITAVYILRLIGRSIYGEVENKSFLILTDASWDEKLSVIVLIICIVGVGSFP 473 >gi|313819450|gb|EFS57164.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL046PA2] gi|314962258|gb|EFT06359.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL002PA2] gi|315085051|gb|EFT57027.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL002PA3] Length = 497 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 153/478 (32%), Positives = 265/478 (55%), Gaps = 16/478 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+++ LPF+G + + G R+ + S + + ++ + V G + Sbjct: 1 MSFPILTVIALLPFVGGVITMM--LRGAAARA---TGMVFSLVTLVLGVYAFIV---GVN 52 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAF 118 + E + WI + Y LG DG+S+ +++L L P +L+ W E R AF Sbjct: 53 GTNLSETHRWIRAVGAWYALGGDGLSLTMILLVVILVPVVLLAEWHVGDDETARWSTGAF 112 Query: 119 ----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L+LE + I F + D+LLFY+ FEA+LIPM+ +I WGG R AA KF LY+ G Sbjct: 113 FGLALMLEGLAIYCFAATDVLLFYLMFEATLIPMYFLIAGWGGPRRGQAAMKFLLYSLAG 172 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + MLFA++ + + + DL A F +I +++ FF +FAIK PM P HTWLP+ Sbjct: 173 GLVMLFAVIGVGVHGGSFLLSDL-AKVDFSGAIGKELFVGFFIAFAIKAPMVPVHTWLPD 231 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 QA S L G++ K+G +G +R L LFP AS + P + L++I++++ ++++ Sbjct: 232 TAEQATAGASSLLVGLLDKIGTFGMLRLCLGLFPAASDWATPFVLTLAIISVLWGAMMAA 291 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 +D+ + ++Y+S++H G++ IGIF+ + + G++F M +HG ++ALF +G + R Sbjct: 292 TSSDLMRFVSYTSVSHFGFMVIGIFALTTTSITGSIFYMFNHGFSTAALFLVLGFLVRRG 351 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T + YGG+ P A + +A + LPGT F+ EF+ + + +++ Sbjct: 352 GTAKVDGYGGVQKVAPVLAGTFLFAGLATLSLPGTGNFVSEFMALAGAWSRHPIYVAIST 411 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 G+VL+A+Y L YR+ + G + +Q+ DL+ RE+ ++ P+ +L + FG +P P+ Sbjct: 412 IGMVLAAVYVLVTYRRTMTGPVQGVS-EQVSDLNGREKLVLAPLIILLLVFGFFPRPM 468 >gi|292492904|ref|YP_003528343.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus halophilus Nc4] gi|291581499|gb|ADE15956.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus halophilus Nc4] Length = 525 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 160/482 (33%), Positives = 265/482 (54%), Gaps = 16/482 (3%) Query: 30 RRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILL 88 R V LG++ I + S+ + +FD + Q +E + WI Y LGVDG+S+L Sbjct: 29 ERRILSVTLGVAVIELLLSVLLLMLFDPYQDGMQFVEQHRWIPTLNIEYLLGVDGLSVLF 88 Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 V LT LT +L+SW+S+Q R Y L LE + IG + +LD+ LF++F+E +L P+ Sbjct: 89 VPLTALLTVAVVLASWRSVQTLPRLYFALLLALEGITIGVYCALDLGLFFLFWELTLPPL 148 Query: 149 FVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA-------- 199 F +I +WG G++R YAA K+ L+ + +LF +++ + + A Sbjct: 149 FFLISLWGIGAQRRYAATKYTLFMLASGVALLFGFILLGLNHANETGVATPAGLSFNYMR 208 Query: 200 --MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 + P Q +++ F FA+K P+FPFH WLP A ++ P V + LK+G + Sbjct: 209 LLETPIPLETQSLIFLLLFFGFAVKAPLFPFHVWLPTAAMEGPA--GVTALLLGLKLGLF 266 Query: 258 GCIRFLLPLFP-LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 G IRF +PL P ASQYF ++ L IY +LV++ QT++++++A+SSI+H+G+V I Sbjct: 267 GIIRFAIPLAPQAASQYFV-LMVLLGAAGAIYGALVALRQTNLRRMLAFSSISHVGFVLI 325 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 G+ + G++GA+FQ+ + G+++ +F G I RL + ++ A GG MP A + Sbjct: 326 GVAAFNIQGIQGAVFQLFNFGIIAGGIFLIAGFIQHRLGSTELTALGGAARPMPILASLF 385 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 + +A++G+PGT+GF E L+++ FQ+ + + A GV+L A Y L Y+K G Sbjct: 386 FILGLASIGVPGTNGFAAEHLIVIGAFQSHTGMGLAALVGVILGAAYFLAFYQKAFLGPL 445 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDS 496 V++ DL RER + + L + G++P + DT + L S + SD+ Sbjct: 446 TQPTVKETVDLRPRERWIAGAMVSLALLLGLFPQGVLDTTNKSLQSWVARLETTPVASDA 505 Query: 497 VK 498 + Sbjct: 506 AE 507 >gi|182436710|ref|YP_001824429.1| putative NADH dehydrogenase chain M [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465226|dbj|BAG19746.1| putative NADH dehydrogenase chain M [Streptomyces griseus subsp. griseus NBRC 13350] Length = 555 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 172/523 (32%), Positives = 260/523 (49%), Gaps = 57/523 (10%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVAL--GISTINFIF--SLFVWSVFDKGR- 59 L+ V P LG L + G ++ L G++ + ++ + + FD Sbjct: 14 LLAFVVVAPLLGAVAALLPAPPGLRGKNPDQAVLRHGVTVTGAVLLAAIVLTAGFDHDHP 73 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQENFREYMI 116 ++ Q WI HLGVDGIS+ L++LT LT C L S+ + + ++ Sbjct: 74 ATMQATTDISWIPALDVRIHLGVDGISLPLLLLTALLTFLCALYSYFKPPAGPSAKAFVA 133 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LVLES + F LD++LF++ FE LIPM+ +I WGG R AA+KF LYT GS+ Sbjct: 134 LVLVLESGTLATFAVLDLVLFFLAFEMVLIPMYFLIARWGGGRRQAAAWKFILYTLLGSV 193 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 ML I+++ + T ++ L + S+Q +A A+K PM+P H+WLP+ Sbjct: 194 VMLLGILLIGLKTGTFDMVALATDNGRGLTTSVQVIAVLAIGLGLAVKTPMWPLHSWLPD 253 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH APT GSV LAG++LKMG YG +R LLP+ P + FAP + +++ I+Y SL + Sbjct: 254 AHTAAPTVGSVLLAGVLLKMGTYGFVRILLPIAPDGMRTFAPYLAAFAVVGIVYGSLACL 313 Query: 295 ------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ LFF VG Sbjct: 314 ALARTGAKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGLLFFLVG 373 Query: 349 VIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 + DR T D+ G L PR ++ +A++GLPG +GF GE L + + Sbjct: 374 AVKDRYGTADLDTLAGATGAALYGRAPRLGALLAFAAVASLGLPGLAGFWGEMLTLFGAY 433 Query: 404 QNSN--------TVAVLASFGVVLSALYSLWLYRKVVFG--------------------- 434 + T + +FG +L+A Y L + R+V G Sbjct: 434 SPAEGLSRPAFRTFMAIGAFGTLLTAAYMLIVVRRVCMGEHAPRSRLSPDPGTANSPDAP 493 Query: 435 -------VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 QL D+ E P+A LTV G++P Sbjct: 494 RPPDGPRTPGAATTPQLADIQTYEAAAWTPLAALTVLAGLWPA 536 >gi|314916750|gb|EFS80581.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL005PA4] Length = 497 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 153/478 (32%), Positives = 265/478 (55%), Gaps = 16/478 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+++ LPF+G + + G R+ + S + + ++ + V G + Sbjct: 1 MSFPILTVIALLPFVGGVITMM--LRGAAARA---TGMVFSLVTLVLGVYAFIV---GVN 52 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAF 118 + E + WI + Y LG DG+S+ +++L L P +L+ W E R AF Sbjct: 53 GTNLSETHRWIRAVGAWYALGGDGLSLTMILLVVILVPVVLLAEWHVGDDETARWSTGAF 112 Query: 119 ----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L+LE + I F + D+LLFY+ FEA+LIPM+ +I WGG R AA KF LY+ G Sbjct: 113 FGLALMLEGLAIYCFAATDVLLFYLMFEATLIPMYFLIAGWGGPRRGRAAMKFLLYSLAG 172 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + MLFA++ + + + DL A F +I +++ FF +FAIK PM P HTWLP+ Sbjct: 173 GLVMLFAVIGVGVHGGSFLLSDL-AKVDFSGAIGKELFVGFFIAFAIKAPMVPVHTWLPD 231 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 QA S L G++ K+G +G +R L LFP AS + P + L++I++++ ++++ Sbjct: 232 TAEQATAGASSLLVGLLDKIGTFGMLRLCLGLFPAASDWATPFVLTLAIISVLWGAMMAA 291 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 +D+ + ++Y+S++H G++ IGIF+ + + G++F M +HG ++ALF +G + R Sbjct: 292 TSSDLMRFVSYTSVSHFGFMVIGIFALTTTSITGSIFYMFNHGFSTAALFLVLGFLVRRG 351 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T + YGG+ P A + +A + LPGT F+ EF+ + + +++ Sbjct: 352 GTAKVDGYGGVQKVAPVLAGTFLFAGLATLSLPGTGNFVSEFMALAGAWSRHPIYVAIST 411 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 G+VL+A+Y L YR+ + G + +Q+ DL+ RE+ ++ P+ +L + FG +P P+ Sbjct: 412 IGMVLAAVYVLVTYRRTMTGPVQGVS-EQVSDLNGREKLVLAPLIILLLVFGFFPRPM 468 >gi|50843374|ref|YP_056601.1| NADH dehydrogenase subunit M [Propionibacterium acnes KPA171202] gi|289426968|ref|ZP_06428687.1| NADH dehydrogenase subunit M [Propionibacterium acnes J165] gi|295131448|ref|YP_003582111.1| proton-translocating NADH-quinone oxidoreductase, chain M [Propionibacterium acnes SK137] gi|50840976|gb|AAT83643.1| NADH dehydrogenase I chain M [Propionibacterium acnes KPA171202] gi|289159790|gb|EFD07975.1| NADH dehydrogenase subunit M [Propionibacterium acnes J165] gi|291376520|gb|ADE00375.1| proton-translocating NADH-quinone oxidoreductase, chain M [Propionibacterium acnes SK137] gi|313763296|gb|EFS34660.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL013PA1] gi|313773342|gb|EFS39308.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL074PA1] gi|313806339|gb|EFS44855.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL087PA2] gi|313810755|gb|EFS48469.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL083PA1] gi|313813686|gb|EFS51400.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL025PA1] gi|313814964|gb|EFS52678.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL059PA1] gi|313829358|gb|EFS67072.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL063PA2] gi|313831066|gb|EFS68780.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL007PA1] gi|313833196|gb|EFS70910.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL056PA1] gi|314919124|gb|EFS82955.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL050PA1] gi|314921204|gb|EFS85035.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL050PA3] gi|314930368|gb|EFS94199.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL067PA1] gi|314956151|gb|EFT00547.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL027PA1] gi|314959684|gb|EFT03786.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL002PA1] gi|314969771|gb|EFT13869.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL037PA1] gi|314973950|gb|EFT18046.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL053PA1] gi|314976878|gb|EFT20973.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL045PA1] gi|314979343|gb|EFT23437.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL072PA2] gi|314985000|gb|EFT29092.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL005PA1] gi|314986325|gb|EFT30417.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL005PA2] gi|314988578|gb|EFT32669.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL005PA3] gi|315081023|gb|EFT52999.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL078PA1] gi|315083914|gb|EFT55890.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL027PA2] gi|315089480|gb|EFT61456.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL072PA1] gi|315097701|gb|EFT69677.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL038PA1] gi|315098092|gb|EFT70068.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL059PA2] gi|315102690|gb|EFT74666.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL046PA1] gi|315107930|gb|EFT79906.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL030PA1] gi|327325721|gb|EGE67518.1| NADH-quinone oxidoreductase, M subunit [Propionibacterium acnes HL096PA3] gi|327330831|gb|EGE72576.1| NADH-quinone oxidoreductase, M subunit [Propionibacterium acnes HL096PA2] gi|327442876|gb|EGE89530.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL043PA2] gi|327445268|gb|EGE91922.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL043PA1] gi|327447746|gb|EGE94400.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL013PA2] gi|327451643|gb|EGE98297.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL087PA3] gi|327452296|gb|EGE98950.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL083PA2] gi|328752129|gb|EGF65745.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL025PA2] gi|328755073|gb|EGF68689.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL020PA1] gi|328757021|gb|EGF70637.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL087PA1] gi|328761557|gb|EGF75075.1| NADH-quinone oxidoreductase, M subunit [Propionibacterium acnes HL099PA1] gi|332676317|gb|AEE73133.1| NADH-quinone oxidoreductase subunit M [Propionibacterium acnes 266] Length = 497 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 153/478 (32%), Positives = 265/478 (55%), Gaps = 16/478 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+++ LPF+G + + G R+ + S + + ++ + V G + Sbjct: 1 MSFPILTVIALLPFVGGVITMM--LRGAAARA---TGMVFSLVTLVLGVYAFIV---GVN 52 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAF 118 + E + WI + Y LG DG+S+ +++L L P +L+ W E R AF Sbjct: 53 GTNLSETHRWIRAVGAWYALGGDGLSLTMILLVVILVPVVLLAEWHVGDDETARWSTGAF 112 Query: 119 ----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L+LE + I F + D+LLFY+ FEA+LIPM+ +I WGG R AA KF LY+ G Sbjct: 113 FGLALMLEGLAIYCFAATDVLLFYLMFEATLIPMYFLIAGWGGPRRGRAAMKFLLYSLAG 172 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + MLFA++ + + + DL A F +I +++ FF +FAIK PM P HTWLP+ Sbjct: 173 GLVMLFAVIGVGVHGGSFLLSDL-AKVDFSGAIGKELFVGFFIAFAIKAPMVPVHTWLPD 231 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 QA S L G++ K+G +G +R L LFP AS + P + L++I++++ ++++ Sbjct: 232 TAEQATAGASSLLVGLLDKIGTFGMLRLCLGLFPAASDWATPFVLTLAIISVLWGAMMAA 291 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 +D+ + ++Y+S++H G++ IGIF+ + + G++F M +HG ++ALF +G + R Sbjct: 292 TSSDLMRFVSYTSVSHFGFMVIGIFALTTTSITGSIFYMFNHGFSTAALFLVLGFLVRRG 351 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T + YGG+ P A + +A + LPGT F+ EF+ + + +++ Sbjct: 352 GTAKVDGYGGVQKVAPVLAGTFLFAGLATLSLPGTGNFVSEFMALAGAWSRHPIYVAIST 411 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 G+VL+A+Y L YR+ + G + +Q+ DL+ RE+ ++ P+ +L + FG +P P+ Sbjct: 412 IGMVLAAVYVLVTYRRTMTGPVQGVS-EQVSDLNGREKLVLAPLIILLLVFGFFPRPM 468 >gi|325298890|ref|YP_004258807.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides salanitronis DSM 18170] gi|324318443|gb|ADY36334.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides salanitronis DSM 18170] Length = 493 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 145/421 (34%), Positives = 243/421 (57%), Gaps = 16/421 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 +Y +GVDGIS+++++L+ + +SWK ++ +EY + F +L + V G F+S D+ Sbjct: 76 AYSVGVDGISVVMLLLSAIIVFTGTFASWK-LKPLTKEYFLWFTLLSTGVFGFFISTDLF 134 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSS 193 ++F+E +LIPM+++IGVWG + Y+A K L GS F+L I+ + + +T + Sbjct: 135 TMFMFYEVALIPMYLLIGVWGSGRKEYSAMKLTLMLMGGSAFLLIGILGIFYGAGAETMN 194 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 +I++ A K P Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 195 VIEI-AKLKIPTEFQQIFFPMVFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 253 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P Y+ L+ I+++Y + ++VQTD+K + AYSS++H G Sbjct: 254 LGGYGCFRVAMYLMPTGLAYWGDFFLVLTTISVVYGAFSAVVQTDLKYINAYSSVSHCGL 313 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + + GA+ QMLSHGL+++ F +G+IY R HTRDI GL+ MP A Sbjct: 314 VLFALLMATRVSSTGAILQMLSHGLMTALFFALIGMIYGRTHTRDIRQLSGLMKIMPFLA 373 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V ++ +AN+GLPG SGFI E V + F++++ ++A+ +V++A+Y L + Sbjct: 374 VGYVIAGLANLGLPGLSGFIAEMTVFVGSFEHTDVFHRACTIIATTSIVITAVYILRVVG 433 Query: 430 KVVFGVSKCEKVQQLKDLSLRER----CMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 K+++G + + +L D + ER C++ +A L G+ P + D + + II Sbjct: 434 KILYGTCQNPEHLKLTDATWDERFAVICLIAAVAGL----GLAPWWVSDVINASVEPIIS 489 Query: 486 N 486 Sbjct: 490 Q 490 >gi|197107560|gb|ACH42360.1| NADH dehydrogenase subunit 4 [Analipus japonicus] Length = 246 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/243 (51%), Positives = 177/243 (72%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 V+LT+ + P C+L+SW ++N R Y+I+FL++E +++ F +D+L FYIFFEA LIPM Sbjct: 4 VLLTSLIFPLCLLASWSFAKDNLRVYLISFLIMELVLLLVFTCVDLLFFYIFFEAVLIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG++G ER I AAY FF+YT GS+FML +V + ++ + L + P++ Sbjct: 64 FLVIGIYGSRERKIRAAYMFFIYTLLGSLFMLIGVVYIYLFAGSTHLEVLNIVGFSPYT- 122 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 123 QRWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 182 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 PLAS YF P++F LS+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G G+E Sbjct: 183 PLASIYFTPLVFSLSVFGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVVIGLFTGTVIGIE 242 Query: 328 GAM 330 A+ Sbjct: 243 AAI 245 >gi|164421193|ref|YP_001648690.1| NADH dehydrogenase subunit 4 [Vaceletia sp. GW948] gi|158939051|gb|ABW83970.1| NADH dehydrogenase subunit 4 [Vaceletia sp. GW948] Length = 467 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 178/391 (45%), Positives = 251/391 (64%), Gaps = 3/391 (0%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 GVDG+S ++L L P CIL SW+SI+ RE++I+ VL ++IG F +D+L FYI Sbjct: 71 GVDGLSYCFLLLVILLLPICILVSWESIKFLVREFLISLFVLSWVLIGVFTIMDILGFYI 130 Query: 140 FFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 FEA LIPMF+I+ +WG E+I A + FF +TFFGS+F+L I+++C + + + +Y Sbjct: 131 LFEAVLIPMFLIVILWGSREEKIRAGFYFFFFTFFGSVFLLLGIIILCIKAGATDYMYIY 190 Query: 199 AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 + F Q ++I FF FAIK+P+FPFH WLP AHV+AP AGSV LAGI+LK+GGYG Sbjct: 191 SHKINNFW-QCLLFILFFWGFAIKVPLFPFHIWLPQAHVEAPIAGSVLLAGILLKLGGYG 249 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +RF L LFP+ ++Y + + L L+A+IY SLV+ Q D+K+++AYSS+AHMG V +G+ Sbjct: 250 FLRFSLGLFPIGAEYCSSFVLTLGLLAVIYGSLVTCRQVDLKRVVAYSSVAHMGVVLLGL 309 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 FS G G ++ M +HGLVS LF V +YDR +TR I Y G+ MP + + Sbjct: 310 FSLTSEGEMGGIYLMFAHGLVSPGLFIAVTCLYDRYNTRLIRYYRGIWVKMPVFXFFFFL 369 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 T+AN+ LP + FIGEFL +M +FQ S + + VVLSA+YSL+LY +V FG Sbjct: 370 LTLANLXLPLSLNFIGEFLCLMGLFQYSWYFGLCSCLSVVLSAVYSLYLYNRVAFGAYSK 429 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 V +DL+ RE + + L GI P Sbjct: 430 YMVGG-RDLNRREVYVFVVLLCLVYLLGICP 459 >gi|318040991|ref|ZP_07972947.1| proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus sp. CB0101] Length = 502 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 172/505 (34%), Positives = 263/505 (52%), Gaps = 29/505 (5%) Query: 5 FLSIVTFLPFLGVFVILF---SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 LS + +PFLG +L S G R+ + + I + SL FD + Sbjct: 2 LLSSLLLVPFLGTLALLVWPGSPTPGQLRQ----ITIVILVAQLVLSLLTALQFDTATAG 57 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E++ W+ Y +GVDG+S+ LV++ LT + + + I + R Y L+ Sbjct: 58 LQLTEHHSWVPSIGLDYAVGVDGLSLPLVLINGALTLVSAVIT-RDISKRPRLYFAMLLL 116 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + V GAFL+ ++LLF++F+E LIP++++I VWGG R YAA KF ++T ML Sbjct: 117 ISGAVNGAFLADNLLLFFLFYELELIPLWLLISVWGGVNRAYAATKFLIFTAVSG--MLI 174 Query: 181 AIVVMCWEKKTSSI---IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + T S+ + + Q W+ A F IKIP+ P H WLP+AH Sbjct: 175 LGAFLGLALLTGSVDFSLTPVLSERLSMGGQLWLLGAILIGFGIKIPLVPLHNWLPDAHT 234 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 QA T SV LAG++LK+G YG +RF L LFP A AP + + ++++Y SL ++ QT Sbjct: 235 QASTPVSVLLAGVLLKLGTYGLLRFGLQLFPEAWAALAPGLAIWAAVSVLYGSLAAIAQT 294 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K+++AYSS+ HMGYV + + + GA+FQM+SHGL+S+ LF VG++Y + TR Sbjct: 295 DMKRMVAYSSVGHMGYVLLAAAADTPVSLLGAVFQMVSHGLISALLFLLVGIVYRKTGTR 354 Query: 358 DIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 D+ GL++ +P +M+V MA+ GLPG +GFI EFLV +L+ Sbjct: 355 DLEVLRGLLNPERGLPLTGSLMIVAVMASAGLPGMAGFISEFLVFRGSISAFPLATLLSM 414 Query: 415 FGVVLSALYSLWLYRKVVFG-----------VSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 G L+A+Y L L + FG + QL ++ RE +A V Sbjct: 415 VGSGLTAVYFLLLVNRAFFGRLAITPPSGDTTADARLDVQLSSVAPRETIPALALAASIV 474 Query: 464 FFGIYPVPIRDTFSVPLSSIIENYT 488 F G+ P + + V S+ + N T Sbjct: 475 FIGLVPSSLGNLSEVA-STALANLT 498 >gi|159036371|ref|YP_001535624.1| proton-translocating NADH-quinone oxidoreductase, chain M [Salinispora arenicola CNS-205] gi|157915206|gb|ABV96633.1| proton-translocating NADH-quinone oxidoreductase, chain M [Salinispora arenicola CNS-205] Length = 496 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 159/458 (34%), Positives = 257/458 (56%), Gaps = 29/458 (6%) Query: 38 LGISTINFIFSLFVWSVFD---KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTT 93 +G++ ++ + VW+ ++ G+ +F E WI SYHLGVDG+S+ L+ +TT Sbjct: 32 VGVAALDLVLVGVVWAGYETPPPGQLAFA--ERAAWIPGVGSSYHLGVDGLSLPLMAMTT 89 Query: 94 FLTPFCILSSWKSIQENFREYMIA--FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 + C L +++E R + A FL L+ + +G F + D++LF++FF+ S++ M+V+ Sbjct: 90 VVFLACAL---YALRERHRPRVQASLFLFLQCVSLGLFAAADLILFFVFFDLSIVGMYVV 146 Query: 152 IGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM--CWEKKTSSIIDLYA---MSKFPFS 206 I WG +R +A KFFLYTF GS+ +L + + + T + L A ++ P + Sbjct: 147 IAGWGHGDRGRSALKFFLYTFLGSLALLTGFIGLFAAADPHTFDMPTLTADNPLAGRPLA 206 Query: 207 IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 + A A+K P PFHTWLP AH AP GS LA ++LKMG YG +R P+ Sbjct: 207 GGLVL-AAILLGLAVKTPTVPFHTWLPPAHTDAPAVGSAVLAAVLLKMGTYGFVRIAAPM 265 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI-FSGMKS- 324 P A + +A VI + +++++Y +LV++ QT++K++IAY+SI HMGYV + + +G+ S Sbjct: 266 LPQAWRGWAWVIIAVGVVSVLYGALVALAQTNLKRMIAYTSINHMGYVVLAVGVAGLVSV 325 Query: 325 --------GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 V GA+ QM+SHGL+++ALF GV+Y+R + D+ AYGGL P +A Sbjct: 326 DTAGPRAVAVTGAVTQMVSHGLITAALFLLAGVVYERAGSYDLHAYGGLAAPAPVFAGFF 385 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 V A++GLP SGFI EF + + AV A G++++A L + ++ G + Sbjct: 386 AVGAFASLGLPAFSGFIAEFQIFAGSIATAPVTAV-ALLGILVTAALFLRAGQALLTGPT 444 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 DL E + P+ L++F G+ P P+ D Sbjct: 445 AGHS-TGFGDLRASEVWSIGPLLALSLFIGVLPRPLLD 481 >gi|224538202|ref|ZP_03678741.1| hypothetical protein BACCELL_03093 [Bacteroides cellulosilyticus DSM 14838] gi|224520197|gb|EEF89302.1| hypothetical protein BACCELL_03093 [Bacteroides cellulosilyticus DSM 14838] Length = 493 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 145/418 (34%), Positives = 237/418 (56%), Gaps = 10/418 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L+ + +SW+ +Q +EY + F +L V G F+S D+ Sbjct: 77 YSVGVDGISVAMLLLSAIIVFTGTFASWR-LQPLTKEYFLWFTLLSLGVFGFFISTDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 ++F+E +LIPM+++IGVWG + Y+A K L GS F+L I+ + + +S + Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYSAMKLTLMLMGGSAFLLIGILGIYFGSGATSMNL 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ + P Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 LEIAQLHNIPIEQQRIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 255 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A+Q + L+ I+++Y + + VQTD+K + AYSS++H G V Sbjct: 256 GGYGCFRIAMYLMPEAAQELGWIFLILTGISVVYGAFSACVQTDLKYINAYSSVSHCGLV 315 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP AV Sbjct: 316 LFAILMMNQTACTGAVLQMLSHGLMTALFFALIGMIYGRTHTRDVRELSGLMKIMPFLAV 375 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGF+ E + FQ+++ T ++A +V++A+Y L L K Sbjct: 376 CYVIAGLANLGLPGLSGFVAEMTIFNGAFQHADVFHRTWTIIACTSIVITAVYILRLVGK 435 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS---VPLSSIIE 485 +++G + L D + ER V + V G+ P+ I + +PL SI + Sbjct: 436 ILYGTCTNKHHLALTDATWDERTAVIILIVCVAGLGLAPLWISNMIGDSVLPLVSIFQ 493 >gi|160891178|ref|ZP_02072181.1| hypothetical protein BACUNI_03625 [Bacteroides uniformis ATCC 8492] gi|270294469|ref|ZP_06200671.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317481074|ref|ZP_07940153.1| proton-translocating NADH-quinone oxidoreductase [Bacteroides sp. 4_1_36] gi|156859399|gb|EDO52830.1| hypothetical protein BACUNI_03625 [Bacteroides uniformis ATCC 8492] gi|270275936|gb|EFA21796.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316902787|gb|EFV24662.1| proton-translocating NADH-quinone oxidoreductase [Bacteroides sp. 4_1_36] Length = 494 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 146/419 (34%), Positives = 233/419 (55%), Gaps = 18/419 (4%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L+ + +SW+ +Q +EY + F L V G F+S+D+ Sbjct: 77 YSVGVDGISVAMLLLSAIIVFTGTFASWR-LQPLTKEYFLWFTFLSIGVFGFFISIDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 ++F+E +LIPM+++IGVWG + Y+A K L GS F+L I+ + + +S + Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYSAMKLTLMLMGGSAFLLIGILGIYYGAGATSMNL 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ M P Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 LEIAQMHNIPIEQQRIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 255 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A+Q + L+ I+++Y + + VQTD+K + AYSS++H G V Sbjct: 256 GGYGCFRIAMYLMPEAAQELGWIFLILTGISVVYGAFSACVQTDLKYINAYSSVSHCGLV 315 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP AV Sbjct: 316 LFAILMMNQTACTGAVLQMLSHGLMTALFFALIGMIYGRTHTRDVRELSGLMKIMPFLAV 375 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV----AVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGFI E + FQ+ +T V+A +V++A+Y L L K Sbjct: 376 CYVIAGLANLGLPGLSGFIAEMTIFTGSFQHPDTFHRVWTVIACSSIVITAVYILRLVGK 435 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP-----------VPIRDTFSV 478 +++G + L D + ER V + G+ P +PI D F++ Sbjct: 436 ILYGTCTNKHHLTLSDATWDERTAVIILIACVAALGMAPWWISGMIGDSVLPITDLFTI 494 >gi|257059473|ref|YP_003137361.1| NAD(P)H-quinone oxidoreductase subunit D4 [Cyanothece sp. PCC 8802] gi|256589639|gb|ACV00526.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 8802] Length = 494 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 170/440 (38%), Positives = 252/440 (57%), Gaps = 9/440 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 V L I+++ F+ +L + FD Q+ EY WI SYHLGVDG+S L+ L + Sbjct: 31 VGLVIASVLFVLTLVLAFQFDPSNPHIQLTEYIPWISSIGLSYHLGVDGLSFPLIFLNSL 90 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 LT I SS K+I+ + R Y L+L S V+GAFLS ++LLF++FFE +IP++ +I + Sbjct: 91 LTLIVIYSSSKTIERS-RFYYALLLILNSGVVGAFLSQNLLLFFLFFELEIIPLYFLIAI 149 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 WGG+ R YAA KF LYT I +L + + + W S+ D + + + + Sbjct: 150 WGGTNRGYAAMKFLLYTALSGILILVSFLGLGWLSGLSTF-DYEPLRSHSLPLSTQLLLL 208 Query: 215 FFCSF--AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 IKIP+FPFHTWLP+AHV+A T SV LAGI+LK+G YG +RF + LF A Sbjct: 209 APLLIGLGIKIPIFPFHTWLPDAHVEASTPVSVVLAGILLKLGTYGLLRFGVGLFFDAWV 268 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 + AP + L+ I+ +Y + +++Q D+KK++AYSSIAHM Y+ + + K + A FQ Sbjct: 269 FIAPWLAILAAISALYGACCAIIQKDMKKVVAYSSIAHMAYILLAAAAATKLSLTAATFQ 328 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGT 389 M+SHGL+S+ LF VG +Y + +RD+ GL++ +P +M++ MA+ G+PG Sbjct: 329 MVSHGLISAMLFLLVGTVYKKTGSRDVDYLRGLLNPQRGLPITGSLMILGVMASAGIPGM 388 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 GFI EFLV F +L G L+A+Y L + +V FG E + +L + Sbjct: 389 VGFIAEFLVFRGSFPIFPVPTLLCLIGSGLTAVYFLLMVNRVFFGRLTSE-LSELPRVLW 447 Query: 450 RERCMVYPIAVLTVFFGIYP 469 ER +A+ V GI P Sbjct: 448 SERLPALVLAICIVVLGIQP 467 >gi|218246431|ref|YP_002371802.1| NAD(P)H-quinone oxidoreductase subunit D4 [Cyanothece sp. PCC 8801] gi|218166909|gb|ACK65646.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 8801] Length = 494 Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 170/440 (38%), Positives = 252/440 (57%), Gaps = 9/440 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 V L I+++ F+ +L + FD Q+ EY WI SYHLGVDG+S L+ L + Sbjct: 31 VGLVIASVLFVLTLVLAFEFDPSNPHIQLTEYIPWISSIGLSYHLGVDGLSFPLIFLNSL 90 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 LT I SS K+I+ + R Y L+L S V+GAFLS ++LLF++FFE +IP++ +I + Sbjct: 91 LTLIVIYSSSKTIERS-RFYYALLLILNSGVVGAFLSQNLLLFFLFFELEIIPLYFLIAI 149 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 WGG+ R YAA KF LYT I +L + + + W S+ D + + + + Sbjct: 150 WGGTNRGYAAMKFLLYTALSGILILVSFLGLGWLSGLSTF-DYEPLRSHSLPLSTQLLLL 208 Query: 215 FFCSF--AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 IKIP+FPFHTWLP+AHV+A T SV LAGI+LK+G YG +RF + LF A Sbjct: 209 APLLIGLGIKIPIFPFHTWLPDAHVEASTPVSVVLAGILLKLGTYGLLRFGVGLFFDAWV 268 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 + AP + L+ I+ +Y + +++Q D+KK++AYSSIAHM Y+ + + K + A FQ Sbjct: 269 FIAPWLAILAAISALYGACCAIIQKDMKKVVAYSSIAHMAYILLAAAAATKLSLTAATFQ 328 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGT 389 M+SHGL+S+ LF VG +Y + +RD+ GL++ +P +M++ MA+ G+PG Sbjct: 329 MVSHGLISAMLFLLVGTVYKKTGSRDVDYLRGLLNPQRGLPITGSLMILGVMASAGIPGM 388 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 GFI EFLV F +L G L+A+Y L + +V FG E + +L + Sbjct: 389 VGFIAEFLVFRGSFPIFPVPTLLCLIGSGLTAVYFLLMVNRVFFGRLTSE-LSELPRVLW 447 Query: 450 RERCMVYPIAVLTVFFGIYP 469 ER +A+ V GI P Sbjct: 448 SERLPALVLAICIVVLGIQP 467 >gi|161347553|ref|NP_892712.2| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 516 Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 166/503 (33%), Positives = 276/503 (54%), Gaps = 16/503 (3%) Query: 1 MNL---PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFV-WSVF 55 MNL P LS + LP +G ++ F SS G ++L I+F+ + V + F Sbjct: 1 MNLESFPLLSSIVLLPLIGALIMPFLSSKEGEDNTLPRNISLSFLFIDFLLIVGVLFQKF 60 Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 D SS Q+IE W+ + LG+DG+S LV L+ +T +SWK I++ Y Sbjct: 61 DTTNSSLQLIERLTWLPSIGLEWSLGIDGLSAPLVALSGLITFLSAAASWK-IKKKSNLY 119 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L+ S FLS D LLF++ +E L+P++++I +WGG +++YAA KF LYT Sbjct: 120 FALLLIQASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGKKKLYAATKFILYTALA 179 Query: 175 SIFMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 S+ +L + + + T ++ + + S+ ++ F F +K+P+FP HTWLP Sbjct: 180 SLLILISGLALALSGDTFTLNLTEITNKQVKGSLALLSYLGFLIGFGVKLPIFPLHTWLP 239 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH +A S+ LAGI+LKMGGY +RF + + P AP + L +I IIY +L + Sbjct: 240 DAHGEANAPVSMLLAGILLKMGGYALLRFNVQILPEVHLQLAPALIILGIINIIYGALNA 299 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+R Sbjct: 300 FAQDNVKRRIACSSVSHMGFVLLGIGAVDALGISGAMLQMISHGLIAAAMFFVTGSFYER 359 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------N 407 +T I GGL +P + ++A++ LPG SGFI E V + + Sbjct: 360 TNTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEGFSSLFR 419 Query: 408 TVAVL-ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 ++ +L A+ G+VL+ +Y L + R+V FG + + +K+++ RE + + + + T+ G Sbjct: 420 SITILIAAIGLVLTPIYLLSMCRRVFFG-PRIPALATVKEMNGRELTIGFSLLLPTLVIG 478 Query: 467 IYPVPIRDTFSVPLSSIIENYTL 489 +P + + +++ + TL Sbjct: 479 FWPKIAINLYESSTNALSQQLTL 501 >gi|326777310|ref|ZP_08236575.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces cf. griseus XylebKG-1] gi|326657643|gb|EGE42489.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces cf. griseus XylebKG-1] Length = 555 Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 172/523 (32%), Positives = 259/523 (49%), Gaps = 57/523 (10%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVAL--GISTINFIF--SLFVWSVFDKGR- 59 L+ V P LG L + G ++ L G++ + ++ + + FD Sbjct: 14 LLAFVVVAPLLGAVAALLPAPPGLRGKNPDQAVLRHGVTVTGAVLLAAIVLTAGFDHDHP 73 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQENFREYMI 116 ++ Q WI HLGVDGIS+ L++LT LT C L S+ + ++ Sbjct: 74 ATMQATTDISWIPALDVRIHLGVDGISLPLLLLTALLTFLCALYSYFKPPAGPPAKAFVA 133 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LVLES + F LD++LF++ FE LIPM+ +I WGG R AA+KF LYT GS+ Sbjct: 134 LVLVLESGTLATFAVLDLVLFFLAFEMVLIPMYFLIARWGGGRRQAAAWKFILYTLLGSV 193 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 ML I+++ + T ++ L + S+Q +A A+K PM+P H+WLP+ Sbjct: 194 VMLLGILLIGLKTGTFDMVALATDNGRGLTTSVQVIAVLAIGLGLAVKTPMWPLHSWLPD 253 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH APT GSV LAG++LKMG YG +R LLP+ P + FAP + +++ I+Y SL + Sbjct: 254 AHTAAPTVGSVLLAGVLLKMGTYGFVRILLPIAPDGMRTFAPYLAAFAVVGIVYGSLACL 313 Query: 295 ------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ LFF VG Sbjct: 314 ALARTGAKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGLLFFLVG 373 Query: 349 VIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 + DR T D+ G L PR ++ +A++GLPG +GF GE L + + Sbjct: 374 AVKDRYGTADLDTLAGATGAALYGRAPRLGALLAFAAVASLGLPGLAGFWGEMLTLFGAY 433 Query: 404 QNSN--------TVAVLASFGVVLSALYSLWLYRKVVFG--------------------- 434 + T + +FG +L+A Y L + R+V G Sbjct: 434 SPAEGLSRPAFRTFMAIGAFGTLLTAAYMLIVVRRVCMGEHAPRSRLSPDPGTANSPDAP 493 Query: 435 -------VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 QL D+ E P+A LTV G++P Sbjct: 494 RPPDGPRTPGAATTPQLADIQTYEAAAWTPLAALTVLAGLWPA 536 >gi|189162321|ref|YP_001936567.1| NADH dehydrogenase subunit 4 [Fagopyrum esculentum subsp. ancestrale] gi|166065407|gb|ABY79782.1| NADH dehydrogenase subunit 4 [Fagopyrum esculentum subsp. ancestrale] Length = 499 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 266/478 (55%), Gaps = 15/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+++ LP +ILF + G ++ L I + F+ + +V+ F Sbjct: 5 PWLTLIVVLPIFAGSLILFLPHRGNKVIRWY--TLCICILEFLLTTYVFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y+WI +F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 63 QLAEDYNWIHFFYFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 122 YSGQIGLFSSRDLLLFFLMWELELIPVYLLLSIWGGKKRLYSATKFILYTAAGSVFLLVG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++L + +P + + +I F +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNLETLGNQSYPVAFEILFYIGFLIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGTIQIIYAASASPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGISSITDTGFNGAILQIISHGFIGAALFFLAGTSYDRIRVVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---TVAVLASF- 415 GG+ +MP+ + F+MA++ LPG SGF E +V + + V VL +F Sbjct: 362 DEIGGIAISMPKIFTLFSTFSMASLALPGMSGFFAELMVFFGIITSHKYFLMVKVLITFG 421 Query: 416 ---GVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 G++L+ +Y L + R++ +G D RE + I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLLNNANSFFFDSGPRELFVSLAIFLPVLGIGIYP 479 >gi|124360822|gb|ABN08794.1| NADH/Ubiquinone/plastoquinone (complex I) [Medicago truncatula] Length = 498 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 158/482 (32%), Positives = 263/482 (54%), Gaps = 23/482 (4%) Query: 4 PFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+IV P +G + LF G + ++ I I+ + + + + F Sbjct: 6 PWLTIVVVFPIAVGSLIFLFPHR---GNKVIRWYSISICLIDLLLTTYAFCYHFQLDDPL 62 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++F Y LG+DG+SI ++LT F+T L++ Q REY + + + Sbjct: 63 IQLTENYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAA----QPVTREYQLFYFL 118 Query: 121 LESM---VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 + +M IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F Sbjct: 119 MLAMYSGQIGPFSSRDILLFFIMWELELIPVYILLAMWGGKKRLYSATKFILYTAGGSVF 178 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L I+ + ++ ++ +P +++ ++ AF +FA+K P+ P HTWLP+ Sbjct: 179 LLMGILGIGLYGSNEPTLNFETLTNQSYPVALEIILYTAFLIAFAVKSPIIPLHTWLPDT 238 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + + LAGI+LKMG YG +R + LF A F P + L IIYA+ S Sbjct: 239 HGEAHYSTCMLLAGILLKMGAYGLVRINMELFSHAHSIFCPWLMILGSTQIIYAASTSFG 298 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++KK IAYSS++HMG++ +GI S +G+ GA+ Q++SHG + +ALFF G YDRLH Sbjct: 299 QRNLKKRIAYSSVSHMGFIILGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLH 358 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 + GG+ M + + + +MA++ L G SGF+ E +V + + Sbjct: 359 LLYLDEMGGMAIPMLKIFTIFTILSMASLALSGMSGFVAELIVFFGIITSQKYLFMMKIL 418 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGI 467 + + + G++L+ +Y L + R++ +G D RE + I + + GI Sbjct: 419 ITFVTAIGMILTPIYLLSILRQMFYGYKFFNTPNSYFFDSGPRELFISISILIPVIGIGI 478 Query: 468 YP 469 YP Sbjct: 479 YP 480 >gi|257051779|ref|YP_003129612.1| proton-translocating NADH-quinone oxidoreductase, chain M [Halorhabdus utahensis DSM 12940] gi|256690542|gb|ACV10879.1| proton-translocating NADH-quinone oxidoreductase, chain M [Halorhabdus utahensis DSM 12940] Length = 510 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 155/450 (34%), Positives = 256/450 (56%), Gaps = 28/450 (6%) Query: 48 SLFVWSVFDKGRSSFQMIE-----YYHWID---YFCSYHLGVDGISILLVVLTTFLTPFC 99 SL++WS FD ++ + + W D Y +H+G+DG+S+ L+VLTT LT Sbjct: 40 SLYLWSAFDGASNALLGNDPAFETQFAWFDLGPYALQWHVGLDGVSLPLLVLTTILTTAA 99 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 I+S+W I E ++ L+LE+ ++G F +LD L+++F+E L+PM+ +IG+WGG Sbjct: 100 IVSAWTPIDERESQFYALVLLLEAGLLGVFAALDFFLWFVFWEVVLVPMYFLIGIWGGPR 159 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS-SIIDLYAMSKF--------------P 204 R YAA KFF+YT S+ M + + + S + +DL +++ P Sbjct: 160 RKYAAIKFFVYTNVASLVMFIGFIALVFGLGDSVASLDLPVIAQTLQEEGALGSFAGLEP 219 Query: 205 FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 +++ ++A F FA+K+P+ P HTWLP+AHV+APT SV LAG++LKMG Y +RF Sbjct: 220 DALKATAFLAMFAGFAVKVPIVPVHTWLPDAHVEAPTPVSVLLAGVLLKMGTYALLRFNF 279 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 + P + A +I +++++IY +++++ Q D+K+++AYSSI+ MGYV +G+ + Sbjct: 280 TMLPDVAAANATIIGIFAVVSVIYGAMLALAQRDLKRIVAYSSISSMGYVLLGLIAYTVH 339 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 GV GA FQM+SHG +S +F VGV+Y++ HTR + GL +P A + + M Sbjct: 340 GVGGATFQMVSHGFISGLMFMVVGVVYNQTHTRMVGDMSGLADRLPVTAGIFVAAAFGYM 399 Query: 385 GLPGTSGFIGEFLVIMSVFQN-----SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 GLP SGFIGE L+ + F + + A FG+V+ A Y L+ ++ +FG Sbjct: 400 GLPLMSGFIGEALIFIGAFPSDVLPGAPLFTASAMFGIVIVAGYLLFAMQRALFGPFDLA 459 Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +L +++ + + + GI+P Sbjct: 460 TDYELSRAPVQDVAPLLVLLACVIILGIHP 489 >gi|197107600|gb|ACH42380.1| NADH dehydrogenase subunit 4 [Punctaria latifolia] Length = 245 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 130/243 (53%), Positives = 173/243 (71%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 V+LTT + P C+L+SW + N + Y+I+FL +E +++ F +LD+L FYIFFEA LIPM Sbjct: 3 VILTTLIFPLCLLASWSFDKGNVKTYLISFLSMELVLLLVFTNLDLLFFYIFFEAVLIPM 62 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG++G ER I AAY FFLYT FGS+FML V+ + S+ + A F Sbjct: 63 FLVIGIYGSRERKIRAAYMFFLYTLFGSLFMLIG-VIYIYLFAGSTNYEALATVGFSSYD 121 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 122 QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 181 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P AS YF P +F LSL+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G GVE Sbjct: 182 PEASVYFTPFVFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGVE 241 Query: 328 GAM 330 A+ Sbjct: 242 AAI 244 >gi|39937313|ref|NP_949589.1| proton-translocating NADH-quinone oxidoreductase subunit M [Rhodopseudomonas palustris CGA009] gi|192293093|ref|YP_001993698.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris TIE-1] gi|39651171|emb|CAE29694.1| NADH-ubiquinone dehydrogenase chain M [Rhodopseudomonas palustris CGA009] gi|192286842|gb|ACF03223.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris TIE-1] Length = 480 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 148/406 (36%), Positives = 227/406 (55%), Gaps = 8/406 (1%) Query: 68 YHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI 126 Y W+ F S +DG+S ++ L L +++SW I+ + + + + Sbjct: 60 YPWVPSFGISLDFAIDGLSATMIALAAGLGIISVMASWSEIRTQSGLFHASLCWTVAATV 119 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF---FGSIFMLFAIV 183 G FLS D+L+F F+EA L+P F +I VWG ++ AA KF ++ FG + FA+ Sbjct: 120 GVFLSFDLLIFAFFWEAMLVPAFTLIAVWGHGDKEGAALKFLIFNAVAGFGLLAASFALA 179 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M + T S +L M K +Q WM + F +F +K+ + PFH WLP AH APTAG Sbjct: 180 AMA-DHMTFSAFELAEM-KLSTPVQVWMLLGFSLAFMVKLSVPPFHAWLPEAHTLAPTAG 237 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LAG++LK G YG RF LFP AP L +Y LV+ Q D K+L+ Sbjct: 238 SILLAGLLLKTGAYGLFRFAPMLFPDGLAAVAPYGIALGAAGALYGGLVACGQNDAKRLV 297 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AY+SIAHM V +GI +G+ + GA +M++H +SALF +G +Y+R HTRD+ G Sbjct: 298 AYTSIAHMSIVLMGISAGVHYALAGAAVEMIAHSFSASALFLLIGALYERTHTRDLRQLG 357 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL P++A +F A + LPGT+ F+GE LV++ +FQ + A+LA +V+S +Y Sbjct: 358 GLQQTAPKFAAAFALFCSALLALPGTANFVGEALVVVGIFQVNWVFALLALSTLVVSVIY 417 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + L + +VFG+ + + L D++ RE + + + T+ G+YP Sbjct: 418 ATRLLKGLVFGLPQPKP--PLADMTWREYWPILVMGIGTLIIGLYP 461 >gi|146277739|ref|YP_001167898.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodobacter sphaeroides ATCC 17025] gi|145555980|gb|ABP70593.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodobacter sphaeroides ATCC 17025] Length = 486 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 169/467 (36%), Positives = 252/467 (53%), Gaps = 11/467 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L+ + LPF G LF+ G + +A + + S F F G + I Sbjct: 7 LTALILLPFFGGIAALFAGRWGRDAERWVAIAALGLALLILISSF----FSDGDGRWIAI 62 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E Y W L +DG+S L+V++ L ++ SWK I E A L + Sbjct: 63 ERYDWAPSLGLQVILAMDGLSGALLVVSLALGIVSVIVSWK-ITEYSGLLNAALLWTVAA 121 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 G FLS D+L+F F+E L+P F++I VWG +R AA KF ++ + +L A+ Sbjct: 122 SNGVFLSFDLLVFAFFWELMLVPSFLLISVWGHGDREAAALKFLVFNAVAGLGLLAAVFY 181 Query: 185 MCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + T + D + A + P +Q + + F +F +K+P+ P H WLP+AH QAPTA Sbjct: 182 LGATGDTVTF-DAFEVAERQIPHGVQVLLLLGFAAAFLVKLPVPPLHAWLPDAHTQAPTA 240 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LAG++LK G YG RF LFP AP L IY +L++ QTD K+L Sbjct: 241 GSILLAGLLLKTGAYGLFRFPPMLFPEGFATLAPFGLALGAFGSIYGALLACGQTDAKRL 300 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 +AY+S+AHM V +GI G+ + GA +M++H +SALF +G +YDR TRD+ Sbjct: 301 VAYTSVAHMSIVLMGICGGVYFSLMGAGVEMVAHAFSASALFLLIGALYDRTGTRDLREL 360 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGL N PR+A VF A + +PGT+ F+GE LVI +FQ + A + +V+S + Sbjct: 361 GGLQQNAPRFAAAFAVFFSAALAMPGTANFLGEALVITGMFQVNWIFASITLISLVISVV 420 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Y+ L+++VVFG K + + L+DL+LRE + +AV T+ FG+ P Sbjct: 421 YATRLFKRVVFG--KSRRTEALEDLTLREMGPIVLLAVATLLFGMLP 465 >gi|224026044|ref|ZP_03644410.1| hypothetical protein BACCOPRO_02797 [Bacteroides coprophilus DSM 18228] gi|224019280|gb|EEF77278.1| hypothetical protein BACCOPRO_02797 [Bacteroides coprophilus DSM 18228] Length = 494 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 146/416 (35%), Positives = 240/416 (57%), Gaps = 8/416 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+++++L++ + +SWK ++ +EY + F +L + V G F+S D+ Sbjct: 77 YSVGVDGISVVMLLLSSIIVFTGTFASWK-LKPLTKEYFLWFTLLSTGVFGFFISTDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSI 194 ++F+E +LIPM+++IGVWG ++ YAA K L GS F+L I+ + + +T +I Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGKKEYAAMKLTLMLMGGSAFLLIGILGIFYGAGGETMNI 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ A K P +Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 LEI-AQLKIPTEMQRIFFPMTFVGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 254 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P + + L+ I+++Y + ++VQTD+K + AYSS++H G V Sbjct: 255 GGYGCFRIAMFLMPTGAAIWGDFFLVLTTISVVYGAFSAVVQTDLKYINAYSSVSHCGLV 314 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + K GA+ QMLSHGL+++ F +G+IY R HTRDI GL+ MP +V Sbjct: 315 LFALLMMTKVSATGAILQMLSHGLMTALFFALIGMIYGRTHTRDIRQLSGLMKIMPFLSV 374 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGFI E V + FQ+++ V+A+ +V++A+Y L + K Sbjct: 375 GYVIAGLANLGLPGLSGFIAEMTVFVGSFQHADAFHRICTVIATMSIVITAVYILRVVGK 434 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 +++G + +L D + ER V + V G+ P + S + II Sbjct: 435 ILYGTCTNPEHLKLTDATWDERFAVICLIVAVAGLGLAPYWVSHLISGSVEPIISQ 490 >gi|115604985|ref|YP_784437.1| NADH-plastoquinone oxidoreductase subunit 4 [Drimys granadensis] gi|122164396|sp|Q06GU6|NU4C_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|112032713|gb|ABH88348.1| NADH-plastoquinone oxidoreductase subunit 4 [Drimys granadensis] Length = 503 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 151/440 (34%), Positives = 244/440 (55%), Gaps = 12/440 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI+ + LG+DG+SI +LT F+T L++W +++ + + L + Sbjct: 63 QLEEDYKWINILDFHWRLGIDGLSIGPTLLTGFITTLATLAAWPVTRDS-QLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + M ++L A +P +++ + FF ++A+K P+ P HTWLP+ H +A Sbjct: 182 VPGMGLYGSNEPTLNLETSANRSYPAALEIIFYFGFFIAYAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQPNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG+ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFTIIGIASITDMGLNGAILQIISHGFIGAALFFLAGTSYDRIGLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF E +V + ++ + + Sbjct: 362 DEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFFAELVVFFGIITSTKYLLMPKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNVTNSYFVDSGPRELFVSICIFLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENYTLKT 491 + + +I+ NY K+ Sbjct: 482 VLSLSVEKIEAILSNYLHKS 501 >gi|254526044|ref|ZP_05138096.1| NADH dehydrogenase i domain protein [Prochlorococcus marinus str. MIT 9202] gi|221537468|gb|EEE39921.1| NADH dehydrogenase i domain protein [Prochlorococcus marinus str. MIT 9202] Length = 513 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 167/484 (34%), Positives = 269/484 (55%), Gaps = 18/484 (3%) Query: 1 MNL---PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFV-WSVF 55 MNL P+LS + LP +G ++ F S+ G ++L I+FI + V + F Sbjct: 1 MNLESFPWLSSIVLLPLIGALIMPFLSAKEGEDNTLPRNISLSFLLIDFILIVGVLFQKF 60 Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 + SS Q++E W+ + LGVDG+S L+ L+ +T +SWK I++ Y Sbjct: 61 NTSDSSLQLVERASWLPSIGLEWSLGVDGLSAPLIALSGLITFLSAAASWK-IKKKSNLY 119 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 LV S FLS D LLF++ +E L+P++++I +WGG +++YAA KF LYT Sbjct: 120 FALLLVQASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGKKKLYAATKFILYTALA 179 Query: 175 SIFMLFAIVVMCWEKKT--SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 S+ +L + + + T +I DL S+ ++ F F +K+P+FP HTWL Sbjct: 180 SLLILISGLALALSGDTFTLNITDL-TNKHVTGSLALLSYLGFLIGFGVKLPIFPLHTWL 238 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH +A S+ LAGI+LKMGGY +RF + + P AP + L +I IIY +L Sbjct: 239 PDAHGEANAPVSMLLAGILLKMGGYALLRFNVQILPEIHLQIAPALIILGIINIIYGALN 298 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+ Sbjct: 299 AFAQDNVKRRIACSSVSHMGFVLLGIGAVDALGISGAMLQMISHGLIAAAMFFVTGSFYE 358 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------ 406 R +T I GGL +P + ++A++ LPG SGFI E V + + Sbjct: 359 RTNTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEGFSSIF 418 Query: 407 NTVAVL-ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 ++ VL A+ G+VL+ +Y L + R+V FG + + +K+++ RE + + + + T+ Sbjct: 419 RSITVLIAAIGLVLTPIYLLSMCRRVFFG-PRIPALATVKEMNGRELTIGFSLLLPTLVI 477 Query: 466 GIYP 469 G +P Sbjct: 478 GFWP 481 >gi|313826153|gb|EFS63867.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL063PA1] Length = 497 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 153/478 (32%), Positives = 264/478 (55%), Gaps = 16/478 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+++ LPF+G + + G R+ + S + + ++ + V G + Sbjct: 1 MSFPILTVIALLPFVGGVITMM--LRGAAARA---TGMVFSLVTLVLGVYAFIV---GVN 52 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAF 118 + E + WI + Y LG DG+S+ +++L L P +L+ W E R AF Sbjct: 53 GTNLSETHRWIRAVGAWYALGGDGLSLTMILLVVILVPVVLLAEWHVGDDETARWSTGAF 112 Query: 119 ----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L+LE + I F + D+LLFY+ FEA+LIPM+ +I WGG R AA KF LY+ G Sbjct: 113 FGLALMLEGLAIYCFAATDVLLFYLMFEATLIPMYFLIAGWGGPRRGRAAMKFLLYSLAG 172 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + MLFA++ + + + DL A F +I +++ FF +FAIK PM P HTWLP Sbjct: 173 GLVMLFAVIGVGVHGGSFLLSDL-AKVDFSGAIGKELFVGFFIAFAIKAPMVPVHTWLPG 231 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 QA S L G++ K+G +G +R L LFP AS + P + L++I++++ ++++ Sbjct: 232 TAEQATAGASSLLVGLLDKIGTFGMLRLCLGLFPAASDWATPFVLTLAIISVLWGAMMAA 291 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 +D+ + ++Y+S++H G++ IGIF+ + + G++F M +HG ++ALF +G + R Sbjct: 292 TSSDLMRFVSYTSVSHFGFMVIGIFALTTTSITGSIFYMFNHGFSTAALFLVLGFLVRRG 351 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T + YGG+ P A + +A + LPGT F+ EF+ + + +++ Sbjct: 352 GTAKVDGYGGVQKVAPVLAGTFLFAGLATLSLPGTGNFVSEFMALAGAWSRHPIYVAIST 411 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 G+VL+A+Y L YR+ + G + +Q+ DL+ RE+ ++ P+ +L + FG +P P+ Sbjct: 412 IGMVLAAVYVLVTYRRTMTGPVQGVS-EQVSDLNGREKLVLAPLIILLLVFGFFPRPM 468 >gi|197107578|gb|ACH42369.1| NADH dehydrogenase subunit 4 [Dictyopteris polypodioides] Length = 246 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 127/243 (52%), Positives = 175/243 (72%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 V+LTT + P C+L+SW SI+ + ++I+FL +E ++I F SLD++ FYIFFE LIPM Sbjct: 4 VILTTLIFPLCLLASWFSIKSEIKMFLISFLGMELVLILVFTSLDLIFFYIFFETILIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG+WG +R + A+Y FFLYT GS+ ML A++ + T++ L + KF Sbjct: 64 FLVIGIWGSRQRKVRASYLFFLYTLLGSLLMLVAVIYVYHYAGTTNYEALLCI-KFESFE 122 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM PFH WLP AHV+APTAGSV LAG++LK+G YG +RF L LF Sbjct: 123 QKWLWLAFFASFAAKVPMLPFHIWLPEAHVEAPTAGSVILAGLLLKLGSYGFVRFSLGLF 182 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P AS YF P +F LSL+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G GVE Sbjct: 183 PEASIYFTPFVFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVIIGLFTGTVIGVE 242 Query: 328 GAM 330 A+ Sbjct: 243 AAL 245 >gi|290486875|gb|ADD29822.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Euonymus americanus] Length = 499 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 159/496 (32%), Positives = 265/496 (53%), Gaps = 13/496 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I P +I F G + A+ I + + +V+ F Sbjct: 5 PWLTIFVVFPISAGSLIFFLPQPQGGNKVIRWYAICICVLELLLMTYVFCYRFQSDDLLI 64 Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y W+D+F Y LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 65 QLAENYKWVDFFGFYWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 123 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP++++I +WGG +R+Y+A KF LYT GS+F+L Sbjct: 124 YSGQIGLFSSRDLLLFFIMWELELIPVYLLIFMWGGKQRLYSATKFILYTAGGSLFLLIG 183 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 I+ +C ++ A +P +++ +I F +FA+K+P+ P HTWLP+ H +A Sbjct: 184 ILGICLYGSNEPTLNFETSANQPYPLALEIIFYIGFLIAFAVKLPIIPLHTWLPDTHGEA 243 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A +P + + I IIYA+ S Q ++ Sbjct: 244 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSLVSPWLIIIGTIQIIYAASTSPSQRNL 303 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 304 KKRIAYSSVSHMGFIIIGICSLSDTGLNGALLQIISHGFIGAALFFVAGTSYDRIRLLYL 363 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ ++P+ + + +MA++ LPG SGF E ++ + + + + Sbjct: 364 DKMGGMAISVPKIFTMFSISSMASLALPGMSGFFAELIIFFGIITSQKFLLLAKILIIFV 423 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G +L+ +Y L + ++ +G D RE + I + + GIYP Sbjct: 424 MAIGTILTPVYLLSMLHQMFYGYKLFNASNSSFLDFGPRELFISISILLPVIGIGIYPDF 483 Query: 472 IRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 484 VFSLSGDKVEAILYNY 499 >gi|116662192|ref|YP_829247.1| proton-translocating NADH-quinone oxidoreductase, chain M [Arthrobacter sp. FB24] gi|116612944|gb|ABK05666.1| NADH dehydrogenase subunit M [Arthrobacter sp. FB24] Length = 495 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 164/470 (34%), Positives = 258/470 (54%), Gaps = 21/470 (4%) Query: 31 RSFFGVALGISTINFIFSLFVWSVF-DKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILL 88 R+ F G+ T ++ +W+ + D G E WI + SYHLGVDG+S+ L Sbjct: 28 RTVFAATAGVETA---LAVGLWAGYRDPGPGGLAYEERLRWIPNVGSSYHLGVDGLSLPL 84 Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 +VLTT + C + WKS ++ R FL LE+ +G F + D++LF++FF+ S++ M Sbjct: 85 LVLTTVIFLACAVYDWKS-RDRVRARSALFLFLETTCLGLFAAQDLILFFLFFDLSIVAM 143 Query: 149 FVIIGVWGGSERIYAAYKFFLYTFFGSIFML--FAIVVMCWEKKTSSIIDLYAMSKFPFS 206 + +I WG +R +A KFFLYTF GS+ +L F + + + T I +L A + F + Sbjct: 144 YFVIAGWGHGDRARSAMKFFLYTFLGSLALLVGFIGLYLGADPHTFDIPELAAANAFRGN 203 Query: 207 -IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 ++ A A+K P PFHTWLP AH AP GS LAGI+LKMG YG +R +P Sbjct: 204 PAGGFVLAAILLGLAVKTPTVPFHTWLPPAHTDAPATGSAVLAGILLKMGTYGFVRIAMP 263 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGM--- 322 L P A + ++P I + +++++Y +LV++ Q+D+K++IAY+S+ HMGY+ I + + Sbjct: 264 LLPDAWRAWSPAILTVGILSVLYGALVALAQSDLKRMIAYTSVNHMGYILIALGAAGAAT 323 Query: 323 -------KSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 + V GA+ QM+SHGL++ ALF GV+ DR T D+ A+GGL P++A Sbjct: 324 GAGSTIRATAVTGAVTQMVSHGLITGALFLLAGVLQDRAKTYDMGAFGGLATPAPKFAGF 383 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 V A++GLP SGFI EF + A+ A G+V++A L +++ G Sbjct: 384 FAVAAFASLGLPAFSGFIAEFQIFAGSIGAVPLTAI-ALPGIVITAALFLRALQRIFTGP 442 Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 K + + DL E + VL+ G++P P+ + +I+ Sbjct: 443 VKG-RAEGFTDLRPAEMLSAGSLLVLSAVVGVFPAPLLAAITPAADAIVS 491 >gi|313793596|gb|EFS41636.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL110PA1] gi|313802893|gb|EFS44106.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL110PA2] gi|313838161|gb|EFS75875.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL086PA1] gi|314963228|gb|EFT07328.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL082PA1] gi|315079695|gb|EFT51683.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL053PA2] gi|327452513|gb|EGE99167.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL092PA1] Length = 497 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 149/478 (31%), Positives = 264/478 (55%), Gaps = 16/478 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+++ LPF+G + + G R+ + S + + ++ + V G + Sbjct: 1 MSFPILTVIALLPFVGGVITMM--LRGAAARA---TGMVFSLVTLVLGVYAFIV---GVN 52 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF- 118 + E + WI + Y LG DG+S+ +++L L P +L+ W ++ + Sbjct: 53 GTNLSETHRWIRAVGAWYALGGDGLSLTMILLVVILVPVVLLAEWHVGDDDTARWSTGAF 112 Query: 119 ----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L+LE + I F + D+LLFY+ FEA+LIPM+ +I WGG R AA KF LY+ G Sbjct: 113 FGLALMLEGLAIYCFAATDVLLFYLMFEATLIPMYFLIAGWGGPRRGRAAMKFLLYSLAG 172 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + MLFA++ + + + DL A F +I +++ FF +FAIK PM P HTWLP+ Sbjct: 173 GLVMLFAVIGVGVHGGSFLLSDL-AKVDFSGAIGKELFVGFFIAFAIKAPMVPVHTWLPD 231 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 QA S L G++ K+G +G +R L LFP AS + P + L++I++++ ++++ Sbjct: 232 TAEQATAGASSLLVGLLDKIGTFGMLRLCLGLFPAASDWATPFVLTLAIISVLWGAMMAA 291 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 +D+ + ++Y+S++H G++ IGIF+ + + G++F M +HG ++ALF +G + R Sbjct: 292 TSSDLMRFVSYTSVSHFGFMVIGIFALTTTSITGSIFYMFNHGFSTAALFLVLGFLVRRG 351 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T + YGG+ P A + +A + LPGT F+ EF+ + + +++ Sbjct: 352 GTAKVDGYGGVQKVAPVLAGTFLFAGLATLSLPGTGNFVSEFMALAGAWSRHPIYVAIST 411 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 G+VL+A+Y L YR+ + G + +Q+ DL+ RE+ ++ P+ +L + FG +P P+ Sbjct: 412 IGMVLAAVYVLVTYRRTMTGPVQGVS-EQVSDLNGREKLVLAPLIILLLVFGFFPRPM 468 >gi|229000079|ref|ZP_04159649.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus mycoides Rock3-17] gi|228759616|gb|EEM08592.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus mycoides Rock3-17] Length = 473 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 143/405 (35%), Positives = 239/405 (59%), Gaps = 21/405 (5%) Query: 53 SVFDKGRSSFQMIEYYHWIDY-----------FCSYHLGVDGISILLVVLTTFLTPFCIL 101 S + G+S E WI + Y LG+DG S+++++LT L + Sbjct: 24 STYASGKSLTMFAEKVKWIQFGHFPGVDEKLFSIYYELGIDGFSLVMMILTALLATLAAI 83 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI 161 +++ SIQ+N + + + L LE ++G F + ++LLF++FFE +L PMF++IG WG Sbjct: 84 TAF-SIQKNIKGFYMLLLTLEIGMLGVFAAENLLLFFVFFEITLPPMFLLIGKWGKLNSE 142 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA---------MSKFPFSIQYWMW 212 AAY + +Y GS +L ++ + T++I DL + S+Q ++ Sbjct: 143 KAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIADLKDILTGVDAALLGDISSSLQLGLF 202 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 IA +FAIK+P+FP H W+ N HV+A A + AG++LK+G YG +RF LFP Q Sbjct: 203 IALMIAFAIKLPVFPLHRWMVNVHVEAHPAAVMLHAGVLLKIGAYGIVRFGKGLFPEQFQ 262 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 FA ++ L +I ++Y + ++++QTD +K++AYSSI+HMG V +G+ + +G++GA+FQ Sbjct: 263 DFAMLLAILGVINLLYGAFLAIIQTDFRKVLAYSSISHMGIVLMGLGALNAAGMKGALFQ 322 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 ++SHGL+++ LF +G+I R T DI GGL +P + ++ +MA++GLPG SGF Sbjct: 323 VVSHGLIAALLFCLLGMIEGRFGTSDITKLGGLAKQVPVLSGFLLAGSMASLGLPGMSGF 382 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSK 437 + EFL + +FQ +A + + G++L+A+Y L +V FG + Sbjct: 383 VSEFLAFLGLFQGKPMLAAIGALGIILTAVYVLRATLQVTFGKKE 427 >gi|7636162|emb|CAB88784.1| NADH dehydrogenase ND4 subunit [Spinacia oleracea] Length = 460 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 154/445 (34%), Positives = 254/445 (57%), Gaps = 14/445 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 F Q++E Y WI++F + LG+DG+SI ++LT F+T L++W + N + Sbjct: 15 FQPDDPLIQLVEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRNSQL 73 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 + L + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT Sbjct: 74 FHFLMLAMYSAQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAG 133 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 GSIF+L ++ + ++L + +P +++ +I FF +FA+K+P+ P HTW Sbjct: 134 GSIFLLMGVLGVGLYGSNEPTLNLETLVNQSYPVALEIIFYIGFFIAFAVKLPIIPLHTW 193 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+ H +A + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ Sbjct: 194 LPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIIGTMQIIYAAS 253 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 S Q ++KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G Y Sbjct: 254 TSPGQRNLKKRIAYSSVSHMGFIIIGISSITDTGLNGAILQIISHGFIGAALFFLAGTSY 313 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 DR+ + GG+ MP+ + F+MA++ LPG SGFI E +V + + + + Sbjct: 314 DRIRLVYLDEMGGIAIPMPKIFTLFSSFSMASLALPGMSGFIAELIVFFGLITSQKYLLI 373 Query: 412 ---LASF----GVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLT 462 L +F G++L+ +Y L + R++ +G K + D RE + I + Sbjct: 374 PKLLITFGMAIGMILTPIYLLSMSRQMFYGY-KLFNISNSSFFDSGPRELFVSTSIFLPV 432 Query: 463 VFFGIYPVPIRDTFSVPLSSIIENY 487 + G+YP + + +I+ NY Sbjct: 433 IGIGVYPDLVLSLSVEKVEAILSNY 457 >gi|296164204|ref|ZP_06846800.1| proton-translocating NADH-quinone oxidoreductase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900435|gb|EFG79845.1| proton-translocating NADH-quinone oxidoreductase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 496 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 250/451 (55%), Gaps = 19/451 (4%) Query: 40 ISTINFIFSLFVWSVFDKGR-SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTP 97 ++ + + +W+++ R + E WI SYHLGVDG+S+ L+V+T + Sbjct: 34 VTATDLALTAMMWALYQTPRPGALAFEEKARWIPGVNSSYHLGVDGLSLPLIVMTAVIFL 93 Query: 98 FCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG 157 C + S + ++ + FL L+++ +G F+S D++LF++FF+ S++ M+ +I WG Sbjct: 94 ACAVYSLRG-RDRPKPLAALFLFLQTVSLGLFVSADLILFFVFFDLSIVAMYFVIAGWGH 152 Query: 158 SERIYAAYKFFLYTFFGSIFMLFAIVVM--CWEKKTSSIIDLYAMSKFPFS--IQYWMWI 213 + +A KFFLYTF GS+ +L + + + T ++ L A + S + Sbjct: 153 GDAGRSALKFFLYTFLGSLALLVGFIGLYVAAQPHTFDMVTLAATTPLGGSPVAGGLVLA 212 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 A A+K P PFHTWLP AH AP AGS LAG++LKMG YG +R +P+ P A + Sbjct: 213 AILLGLAVKTPTVPFHTWLPPAHTDAPAAGSAVLAGVLLKMGAYGFVRIAMPILPQAWRA 272 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI-FSGMKSG------- 325 +A VI + +++++Y +LV++ Q D K+++AY+S+ HMGY+ + + +G+ +G Sbjct: 273 WAWVIIVVGVVSVLYGALVALAQNDFKRMVAYTSVNHMGYIVLAVGAAGLTAGDNAQARG 332 Query: 326 --VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMAN 383 + GA+ QM+SHGL++ ALF GV Y R T D+ YGGL P+ A + V A+ Sbjct: 333 VAITGAVTQMVSHGLITGALFLIAGVFYVRSGTYDMNTYGGLAGPAPKLACLFAVGAFAS 392 Query: 384 MGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ 443 +GLPG SGFI EF + + AV A G++++A L +++ G ++ V Sbjct: 393 LGLPGFSGFIAEFQIFAGSIAAAPITAV-ALPGILITAALFLLALQRLFTGEARGHSV-G 450 Query: 444 LKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 DL E C V + L+V G+ P P+ D Sbjct: 451 FTDLHASETCSVGMLLALSVVIGVLPRPLLD 481 >gi|21222990|ref|NP_628769.1| NADH dehydrogenase subunit NuoM2 [Streptomyces coelicolor A3(2)] gi|10129703|emb|CAC08260.1| NADH dehydrogenase subunit NuoM2 [Streptomyces coelicolor A3(2)] Length = 534 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 163/446 (36%), Positives = 240/446 (53%), Gaps = 39/446 (8%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW-KSIQENF------ 111 S Q WI HLG+DGIS+ L+VLT LT C L S+ K E Sbjct: 72 SKMQASTDISWIPALDVRIHLGIDGISLPLLVLTALLTFLCALYSYLKQRHERLTPRAPG 131 Query: 112 ---REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFF 168 + ++ LVLES + F LD++LF++ FE LIPM+ +I WGG R AA+KF Sbjct: 132 PSPKAFVALLLVLESGTLATFAVLDLILFFLAFEMVLIPMYFLIARWGGEGRAGAAWKFI 191 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS-----KFPFSIQYWMWIAFFCSFAIKI 223 L+T GS+ ML ++++ T+ D+ A++ S+Q +A A+K Sbjct: 192 LFTLLGSVVMLLGLLLIG---ITAGTFDMVALATDNGRSLTTSVQVIAVLAIGLGLAVKT 248 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 PM+P H+WLP+AH APT GSV LAG++LKMG YG IR LLP+ P + FAP + ++ Sbjct: 249 PMWPLHSWLPDAHTAAPTVGSVLLAGVLLKMGTYGFIRILLPVAPEGFRIFAPYLAAFAV 308 Query: 284 IAIIYASLVSM------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 + IIY SL + + D+K+LIAYSS+ HMG+V +G+ + +GV GA+F ++HG Sbjct: 309 VGIIYGSLACLALARRGAKGDLKRLIAYSSVGHMGFVLLGVATMTPTGVNGALFANIAHG 368 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYG-----GLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 L++ LFF VG + DR T D+ L PR ++ +A++GLPG +GF Sbjct: 369 LITGLLFFVVGALKDRTGTTDLDTLAEESGHALYGKAPRLGGLLAFAAVASLGLPGLAGF 428 Query: 393 IGEFLVIMSVFQNSNTVA--------VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-Q 443 GE L + F + ++ +A+FG +L+A Y L + R+V G E Q + Sbjct: 429 WGEMLALFGAFDPHDNLSRPAFLTFMAIAAFGTLLTAAYMLIVVRRVCMGAVPQEAPQPK 488 Query: 444 LKDLSLRERCMVYPIAVLTVFFGIYP 469 D+ E P+ LTV G++P Sbjct: 489 FADVRTYEFAAWTPLVALTVVAGLWP 514 >gi|197107562|gb|ACH42361.1| NADH dehydrogenase subunit 4 [Ascophyllum nodosum] Length = 246 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 128/243 (52%), Positives = 175/243 (72%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 V+LTT + P C+L+SW + + + Y+I+FL +E +++ F SLD+L FYIFFEA LIPM Sbjct: 4 VLLTTLIFPLCLLASWTFNKGDLKTYLISFLSMELVLLLVFTSLDLLFFYIFFEAVLIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG++G +R I AAY FFLYT GS+FML +V + T+S + ++ KF Sbjct: 64 FLVIGIYGSRQRKIRAAYMFFLYTLLGSLFMLVGVVYIYLSVGTTSY-EALSVIKFSSYN 122 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 123 QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 182 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P AS YF P IF LS++ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G G+E Sbjct: 183 PEASIYFTPFIFSLSVVGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGIE 242 Query: 328 GAM 330 A+ Sbjct: 243 AAI 245 >gi|295136987|ref|YP_003587534.1| NADH dehydrogenase subunit 4 [Pisum sativum] gi|293338559|gb|ADE43532.1| NADH dehydrogenase subunit 4 [Pisum sativum] Length = 497 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 153/446 (34%), Positives = 251/446 (56%), Gaps = 22/446 (4%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+IV LP G + LF G + ++ I I+ + + + +S F Sbjct: 5 PWLTIVVVLPIAAGSLIFLFPHR---GNKVIRWYSICICLIDLLLTTYAFSYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI +F + LG+DG+SI ++LT F+T L++ Q REY + + + Sbjct: 62 IQLTENYKWIHFFDFDWRLGIDGLSIGPILLTGFITTLATLAA----QPVTREYQLFYFL 117 Query: 121 LESM---VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 + +M IG F S D+LLF+I +E LIP+++++ +WGG +R Y+A KF LYT S+F Sbjct: 118 MLAMYSGQIGPFSSRDILLFFIMWELELIPVYLLLSIWGGKKRFYSATKFILYTAGASVF 177 Query: 178 MLFAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L I + + K + + +P +++ + AF SFA+K P+ P HTWLP+ Sbjct: 178 LLMGILGIGLYGSNKPTFNFETLINRSYPVALEIIFYTAFLISFAVKSPIIPLHTWLPDT 237 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +A + + LAGI+LK+G YG +R + L A F P + L I IIYA+ S Sbjct: 238 HGEAHYSTCMLLAGILLKLGAYGLVRINMELVSHAHSIFCPWLMILGSIQIIYAASTSFG 297 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q ++KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+H Sbjct: 298 QRNLKKRIAYSSVSHMGFLIIGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRVH 357 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------T 408 + GG+ MP+ + + +MA++ LPG SGF+ E +V + + Sbjct: 358 LLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIISSQKYLFMMKIL 417 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFG 434 + + + G++L+++Y L + R++ +G Sbjct: 418 ITFVTAIGMILTSIYLLSIVRQMFYG 443 >gi|300113816|ref|YP_003760391.1| proton-translocating NADH-quinone oxidoreductase subunit M [Nitrosococcus watsonii C-113] gi|299539753|gb|ADJ28070.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus watsonii C-113] Length = 529 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 162/485 (33%), Positives = 265/485 (54%), Gaps = 20/485 (4%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS++ FLP + +L + VALG++ + SL + +FD + Q Sbjct: 7 PLLSLLIFLPVVAGISLLRIR----NKHRILSVALGVAVAELLLSLILLGLFDPNQDGMQ 62 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E + WI Y LGVDG+S+L V LT +T IL+S +SI+ Y L LE Sbjct: 63 FVEQHSWIPTLNIDYLLGVDGLSVLFVPLTALITVAVILASRRSIKTLSSLYFALLLFLE 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFA 181 + IG + +LD+ LF++F+E +L P+F +I +WG G R YAA K+ L+ G + +LF Sbjct: 123 GITIGVYCTLDLALFFLFWELTLPPLFFLISLWGIGVHRRYAALKYVLFMLTGGVLLLFG 182 Query: 182 IVVMCWEKKTSSIIDLYA----------MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 V++ + I A + P + Q +++ F FAIK P+FPFH W Sbjct: 183 FVLLGLNHANETGIAAPAGLSFNYMELLQTPIPLATQAIVFLLLFFGFAIKAPLFPFHVW 242 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP-LASQYFAPVIFFLSLIAIIYAS 290 LP ++ P + + + G LK+G +G IRF +PL P ASQYF ++ L I IY + Sbjct: 243 LPTMAMEGPASITAIIVG--LKLGLFGIIRFAIPLAPQAASQYFV-LMMLLGAIGAIYGA 299 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 L+++ QT++++++AYSSI+H G+V IG + G++GA+FQ+ + G+V+S +F G + Sbjct: 300 LIALKQTNLRRMLAYSSISHAGFVLIGAATFNIQGIQGAVFQLFNFGIVASGIFLIAGFL 359 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 RL + ++ A GG MP A + + +A++G+PGT+GF E L+++ F+ + Sbjct: 360 QYRLGSTELTALGGAARPMPILASLFFILGLASIGVPGTNGFAAEHLIVIGAFKAHIGMG 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 + G++LSA Y L Y+K G V++ DL RE + + L + G++P Sbjct: 420 LAVLLGIILSAAYYLVFYQKAFLGPVTHATVKEAVDLRSREYWIAGTMVSLALLLGLFPQ 479 Query: 471 PIRDT 475 + +T Sbjct: 480 QVLNT 484 >gi|197107574|gb|ACH42367.1| NADH dehydrogenase subunit 4 [Desmarestia aculeata] Length = 246 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 129/245 (52%), Positives = 174/245 (71%), Gaps = 6/245 (2%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 ++LTT + P C+L+SW + + + Y+I+FL +E +++ F +LD+L FYIFFE LIPM Sbjct: 4 IILTTLIFPLCLLASWSFDKGSVKSYLISFLSMELVLLLVFTNLDLLFFYIFFETVLIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS- 206 F++IG+WG +R I AAY FFLYT GS+FML IV + T+ D A+S FS Sbjct: 64 FLVIGIWGSRQRKIRAAYMFFLYTLLGSLFMLIGIVYIYLFAGTT---DYEALSVIGFSS 120 Query: 207 -IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L Sbjct: 121 YDQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLG 180 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 L PLAS YF P++F LSL ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G G Sbjct: 181 LLPLASVYFTPLVFSLSLFGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIG 240 Query: 326 VEGAM 330 +E A+ Sbjct: 241 IEAAV 245 >gi|290486887|gb|ADD29828.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Plumbago auriculata] Length = 500 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 156/479 (32%), Positives = 265/479 (55%), Gaps = 13/479 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P+L+++ LP +I F + G ++ + + I I +F + F Sbjct: 3 NFPWLTLIVVLPIFAGSLIFFLPHRGNKVIRWYTICICILEFLLITYVFCYH-FQPDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI +F + LG+DG+SI ++LT F+T L++W +++ R + L Sbjct: 62 MQLEEDYKWIRFFDFQWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S +G F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQLGLFSSRDLLLFFLMWELELIPVYLLLSIWGGKKRLYSATKFILYTGGGSIFLLM 180 Query: 181 AIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + + ++ + +P ++ ++ F +FA+K+P+ P HTWLP+ H + Sbjct: 181 GVLGIGLYGSSEPTLNFEKLVNQSYPMGLEIIFYLGFLFAFAVKLPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ VS+ Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPWLMIVGTIQIIYAASVSLGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G GA+FQ++SHG + + LFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGISSITNMGFNGALFQIISHGFIGATLFFVAGTSYDRIRLLY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA----- 413 + GG+ +MP+ + +MA++ LPG SGF E +V + + + + +L Sbjct: 361 LNEMGGIAISMPKIFALFSSLSMASLALPGMSGFFAELMVFIGIITSQKSFLILKILILF 420 Query: 414 --SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +Y L + R++ +G + D RE + I + + GIYP Sbjct: 421 GMAIGIILTPIYLLSMLRQMFYGYKFFNRPNSYFFDSGPRELFVSIAIFLPIIGIGIYP 479 >gi|228994010|ref|ZP_04153912.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus pseudomycoides DSM 12442] gi|228765808|gb|EEM14460.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus pseudomycoides DSM 12442] Length = 465 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 143/405 (35%), Positives = 239/405 (59%), Gaps = 21/405 (5%) Query: 53 SVFDKGRSSFQMIEYYHWIDY-----------FCSYHLGVDGISILLVVLTTFLTPFCIL 101 S + G+S E WI + Y LG+DG S+++++LT L + Sbjct: 16 STYASGKSLTMFAEKVKWIQFGHFPGVDEKLFSIYYELGIDGFSLVMMILTALLATLAAI 75 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI 161 +++ SIQ+N + + + L LE ++G F + ++LLF++FFE +L PMF++IG WG Sbjct: 76 TAF-SIQKNIKGFYMLLLTLEIGMLGVFAAENLLLFFVFFEITLPPMFLLIGKWGKLNSE 134 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA---------MSKFPFSIQYWMW 212 AAY + +Y GS +L ++ + T++I DL + S+Q ++ Sbjct: 135 KAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIADLKDILTGVDTALLGDISSSLQLGLF 194 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 IA +FAIK+P+FP H W+ N HV+A A + AG++LK+G YG +RF LFP Q Sbjct: 195 IALMIAFAIKLPVFPLHRWMVNVHVEAHPAAVMLHAGVLLKIGAYGIVRFGKGLFPEQFQ 254 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 FA ++ L +I ++Y + ++++QTD +K++AYSSI+HMG V +G+ + +G++GA+FQ Sbjct: 255 DFAMLLAILGVINLLYGAFLAIIQTDFRKVLAYSSISHMGIVLMGLGALNAAGMKGALFQ 314 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 ++SHGL+++ LF +G+I R T DI GGL +P + ++ +MA++GLPG SGF Sbjct: 315 VVSHGLIAALLFCLLGMIEGRFGTSDITKLGGLAKQVPVLSGFLLAGSMASLGLPGMSGF 374 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSK 437 + EFL + +FQ +A + + G++L+A+Y L +V FG + Sbjct: 375 VSEFLAFLGLFQGKPMLAAIGALGIILTAVYVLRATLQVTFGKKE 419 >gi|90655545|gb|ABD96383.1| NADH dehydrogenase I chain 4 [uncultured marine type-A Synechococcus GOM 4N23] Length = 496 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 157/428 (36%), Positives = 246/428 (57%), Gaps = 17/428 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS--WKSIQENF 111 FD + Q++E W+ Y L +DG+S+ LV++ L C++S+ +SI+ Sbjct: 51 FDPTDAGLQLVEQARWVHSIGLDYALALDGLSLPLVLMNGVL---CLVSAIASRSIENRP 107 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 R Y LV+ V GAFL+ ++LLF++F+E LIP++++I +WGG+ R YAA KF + T Sbjct: 108 RIYFALLLVISGAVNGAFLAQNLLLFFLFYELELIPLWLLIAIWGGANRAYAATKFLIVT 167 Query: 172 FFGSIFMLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 + +L A + + T S+ + A + + Q + A F IKIP+FPFH Sbjct: 168 AVSGVLILAAFLGLALVTGTMDFSLRPVLA-GELGMASQLVLMGALLIGFGIKIPLFPFH 226 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+AH +A T SV LAG++LK+G YG +RF L LFP A Q AP + + I+++Y Sbjct: 227 TWLPDAHTEASTPVSVLLAGVLLKLGTYGLLRFCLGLFPEAWQLSAPWLAGWAAISVLYG 286 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 SL ++ QTD+K+++AYSS+ HMGYV + + G+ GA+FQM+SHGL+S LF VGV Sbjct: 287 SLAAIAQTDMKRMVAYSSVGHMGYVLLAAAAATPLGLMGALFQMVSHGLISGVLFLLVGV 346 Query: 350 IYDRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 +Y R TRD+ GL++ +P +M++ MA+ G+PG +GFI EFL+ Q Sbjct: 347 VYARTGTRDLNVLRGLLNPQRGLPLTGSLMIIGVMASAGIPGMAGFISEFLIFRGSLQPF 406 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFG-----VSKCEKVQQLKDLSLRERCMVYPIAVL 461 +L+ G L+A+Y L L + FG + + L ++ RE+ +++ Sbjct: 407 PLATLLSMVGSGLTAVYFLLLVNRAFFGRLTIAPGEVPNPRILDRVAFREQVPAIALSLG 466 Query: 462 TVFFGIYP 469 + G+ P Sbjct: 467 VLALGLVP 474 >gi|319947843|ref|ZP_08022031.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dietzia cinnamea P4] gi|319438488|gb|EFV93420.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dietzia cinnamea P4] Length = 496 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 156/446 (34%), Positives = 237/446 (53%), Gaps = 20/446 (4%) Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 D G + E WI SYH+G+DG+S+ LV +T + C + + + R Sbjct: 51 DPGPNGLAFEEQVPWIPGVGSSYHVGIDGLSLPLVAMTVVVFLACAVYCLRD-SDRPRVQ 109 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 FL L+SM +G F+S D++LF++FF+ S++ M+ II WG +A KFFLYTF G Sbjct: 110 AALFLFLQSMSLGVFVSADLILFFVFFDLSIVGMYFIIAGWGHGNAARSALKFFLYTFLG 169 Query: 175 SIFMLFAIVVMC--WEKKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 S+ +L + + T I +L A ++ P + + A A+K P PFH Sbjct: 170 SLALLLGFIGLYVFSAPHTFDIPELVAAPPLAGEPLAGGLVL-AAILVGLAVKTPTVPFH 228 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP AH AP AGS LAG++LKMG YG +R +P+ P + +A VI + +++++Y Sbjct: 229 TWLPPAHTDAPAAGSAVLAGVLLKMGAYGFVRIAMPMLPEVWRAWAWVIVAVGIVSVLYG 288 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTI----------GIFSGMKSGVEGAMFQMLSHGLV 339 +LV++ QTD+K++IAY+S+ HMGY+ + G V GAM QM+SHGL+ Sbjct: 289 ALVALAQTDLKRMIAYTSVNHMGYIVLALGAAGLLVEGAEQARSVAVTGAMVQMVSHGLI 348 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 ++ALF GV+ R T D+ +YGGL PRYA + + A++GLPG SGFI EF + Sbjct: 349 TAALFLLAGVMQSRAGTYDLGSYGGLAGPAPRYAALFAIGAFASLGLPGFSGFIAEFQIF 408 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIA 459 + AV V+ +AL+ L R VF + DL E P+ Sbjct: 409 AGSVAVAPVTAVALVGIVITAALFLRALQR--VFTGPAAGRSPGFADLRAHELWSAGPLL 466 Query: 460 VLTVFFGIYPVPIRDTFSVPLSSIIE 485 L+V G+ P+ + ++++E Sbjct: 467 ALSVLIGVLPLVLLGVIEPSSAALVE 492 >gi|227874596|ref|ZP_03992759.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] gi|269977604|ref|ZP_06184571.1| NADH-quinone oxidoreductase subunit m [Mobiluncus mulieris 28-1] gi|306817880|ref|ZP_07451619.1| NADH-quinone oxidoreductase subunit M [Mobiluncus mulieris ATCC 35239] gi|227844805|gb|EEJ54951.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] gi|269934207|gb|EEZ90774.1| NADH-quinone oxidoreductase subunit m [Mobiluncus mulieris 28-1] gi|304649359|gb|EFM46645.1| NADH-quinone oxidoreductase subunit M [Mobiluncus mulieris ATCC 35239] Length = 544 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 160/492 (32%), Positives = 269/492 (54%), Gaps = 26/492 (5%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINF--IFSLFVWSVFDKG 58 ++P+L+++ P + V+ L GR +AL +S + + S Sbjct: 15 SIPWLTLLVAWPLVFALVLWLVKPLRPLGRE----IALAVSLVELAGVLVAAATSYNPAA 70 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 +FQ+ E Y WI S+ LGV+G+ +++++L T LTP ILSSW+ Q+ A Sbjct: 71 APAFQLGESYPWIPAIGLSWALGVNGLGLVMIILATALTPLVILSSWREDQDADARAGYA 130 Query: 118 FLVL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE---RIYAAYKFFLYTF 172 L+L E+ ++ F + D+LLFY+ FEA L+P++ ++G +G E R +AA KF LY+ Sbjct: 131 GLILGLEACMVLIFTARDLLLFYLTFEAMLVPLYFLVGRFGHGEAARRRHAAIKFVLYSL 190 Query: 173 FGSIFMLFAIVVM--CWEKKTSSIIDLYAMSKF--------PFSIQYWMWIAFFCSFAIK 222 G + MLF ++ + T S L+ M P + + MW F +FAIK Sbjct: 191 AGGLVMLFGVIAVYVGAAPVTKSPAGLFHMDNLTALDLGSNPLA-YFTMWT-FLLAFAIK 248 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 PM P HTWLP A SV L G++ K+G +G I F LFP AS AP++ L+ Sbjct: 249 APMVPVHTWLPTTAAVARGGTSVLLVGVLDKVGTWGMIMFCWQLFPAASAAVAPLVIVLA 308 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 +I+I++ +L ++ D+ +L++++SI+H G++ + ++ G ++ +EGAM M++HG+ + Sbjct: 309 VISILWGALAAIASKDLMRLVSFTSISHFGFMVMALYIGSQTAIEGAMLYMVAHGVSIAG 368 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 +F G + +R T++I AY G P A + + +A +GLPG SGF+ E+L+++ Sbjct: 369 MFLLSGWLTERGGTQEIAAYSGFQRVTPTLAGLFLTSGLAAIGLPGLSGFLPEYLILVGT 428 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 F+ S A+ A GVVL+A+Y L Y+ + G + +V+ DL RE+ ++ P+ + Sbjct: 429 FKVSLAAALFAVLGVVLAAVYLLLPYQNLFTGPTDA-RVRTAPDLGSREKLIMVPVILAM 487 Query: 463 VFFGIYPVPIRD 474 + G P P D Sbjct: 488 LGLGFLPGPTLD 499 >gi|329957590|ref|ZP_08298065.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides clarus YIT 12056] gi|328522467|gb|EGF49576.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides clarus YIT 12056] Length = 495 Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 143/404 (35%), Positives = 229/404 (56%), Gaps = 7/404 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L+ + +SW+ +Q +EY + F +L V G F+S D+ Sbjct: 77 YSVGVDGISVAMLLLSAVIVFTGTFASWR-LQPLTKEYFLWFTLLSMGVFGFFISTDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSI 194 ++F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + T ++ Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIYFGSGATTMNL 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ + P Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 LEIAQLHNIPIEQQRIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 255 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A+Q + L+ I+++Y + + VQTD+K + AYSS++H G V Sbjct: 256 GGYGCFRIAMYLMPEAAQELGWIFLVLTGISVVYGAFSACVQTDLKYINAYSSVSHCGLV 315 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP AV Sbjct: 316 LFAILMMNRTACTGAVLQMLSHGLMTALFFALIGMIYGRTHTRDVRELSGLMKIMPFLAV 375 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV----AVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGFI E + FQ+ +T V+A +V++A+Y L L K Sbjct: 376 SYVIAGLANLGLPGLSGFIAEMTIFNGAFQHPDTFHRVWTVIACTSIVITAVYILRLVGK 435 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 +++G + L D + ER V + G+ P+ I + Sbjct: 436 ILYGTCTNKHHLTLTDATWDERTAVIILIACVAGLGLAPLWISN 479 >gi|116617158|ref|YP_817532.1| NADH-plastoquinone oxidoreductase subunit 4 [Coffea arabica] gi|122153669|sp|A0A385|NU4C_COFAR RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|116242214|gb|ABJ89729.1| NADH-plastoquinone oxidoreductase subunit 4 [Coffea arabica] Length = 500 Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 151/441 (34%), Positives = 251/441 (56%), Gaps = 12/441 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVILPIFAGSLIFFLPHRGNRVIRWYTIFICIFELLLTAYTFCYH-FQTDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LMEDYKWIQLFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFNFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SAQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ A +P ++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 183 LGIGLYGSNEPTLNFETSANQSYPLPLEIIFYIGFFIAFAVKLPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L A F+P + + I IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLSHAHSIFSPWLLIVGTIQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGIGSITDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGIAILMPKIFTIFSTFSMASLALPGMSGFVAELIVFFGIITSQKYLLMPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 423 AIGMILTPIYSLSMSRQMFYG 443 >gi|33519933|ref|NP_878765.1| NADH dehydrogenase I chain M [Candidatus Blochmannia floridanus] gi|33504279|emb|CAD83171.1| NADH dehydrogenase I chain M [Candidatus Blochmannia floridanus] Length = 509 Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 156/471 (33%), Positives = 262/471 (55%), Gaps = 36/471 (7%) Query: 36 VALGISTINFIFSLFVW-------------SVFDKGRSSFQMIEYY-HWIDYF-CSYHLG 80 +AL S++ F+ F+W ++ +SS +EY WI F ++HL Sbjct: 31 IALFGSSMVFVVGFFLWLWRMGYCNNLVLDNLLKLNKSSVWDLEYMCTWIPRFGINFHLA 90 Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFRE--YMIAFLVLESMVIGAFLSLDMLLFY 138 +DG+S+L+++LT L +LSSW++ + + + L + VIG L++DM LF+ Sbjct: 91 LDGLSVLMLMLTGILGVMAVLSSWENSVTDHHKGLFYCNLLWILGSVIGVILAVDMFLFF 150 Query: 139 IFFEASLIPMFVIIGVWGGSE-----RIYAAYKFFLYTFFGSIFMLFAIVVMC------- 186 F+E LIP++ +I +WG E RI AA KF LY + ML +I+++ Sbjct: 151 FFWEIVLIPIYFLISIWGYEELNKKLRIIAATKFCLYAQLSGLCMLISIIILVYFNYRLY 210 Query: 187 --WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 W +++ + P +I+Y++ + FFC+FAIK+P+ PFHTW A+ +P GS Sbjct: 211 GIWSFDYENLLHV----TLPKNIEYFLMLGFFCAFAIKMPIVPFHTWSLEAYAYSPITGS 266 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 V L G ++K+ YG RF+LPL P AS+ F P+ FL ++ I Y + ++ QTD K+LIA Sbjct: 267 VDLIGFLVKISIYGFFRFVLPLCPNASKEFVPIAMFLGILNIFYGAWMAFAQTDFKRLIA 326 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YS+I+HMG+ I I+S + +G + QM+S L S + G +Y RL+TR+I GG Sbjct: 327 YSNISHMGFALIAIYSNDQLSYQGVLVQMISCSLTLSGMCILCGQLYKRLYTRNITVMGG 386 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L M + F ++ + +PGT FIGE +++ F + ++ASFG++ +++YS Sbjct: 387 LWGRMNLMPAFFLCFIVSMLSIPGTGNFIGEVTILLGSFHTVPIITIIASFGILFASIYS 446 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 L L +++ +G S+ + L D++ E+ ++ + + + G +P I DT Sbjct: 447 LVLMQRIYYGKSQIS-CEILLDMTFLEKFIIIVLLLCVLIVGCFPQFIFDT 496 >gi|89895325|ref|YP_518812.1| NADH dehydrogenase I chain M [Desulfitobacterium hafniense Y51] gi|219669759|ref|YP_002460194.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfitobacterium hafniense DCB-2] gi|89334773|dbj|BAE84368.1| NADH dehydrogenase I chain M [Desulfitobacterium hafniense Y51] gi|219540019|gb|ACL21758.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfitobacterium hafniense DCB-2] Length = 519 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 145/411 (35%), Positives = 242/411 (58%), Gaps = 16/411 (3%) Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLS 131 D + GVDGISI +++LT + + SSW +I+ +E+ + L+L + V+G F++ Sbjct: 80 DIGVNLAFGVDGISIPMLLLTNLIAFTAVYSSW-NIENRVKEFFVLLLILIAGVMGTFIA 138 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERI---YAAYKFFLYTFFGSIFMLFAIVVMCWE 188 D+ +F++F+E +IP+++++ +WG ++R+ YA K +Y GS +L A+V + W Sbjct: 139 RDLFIFFLFYEIVVIPIYIMVIIWGSTKRVTKEYAGMKLTIYLLLGSALLLVAMVSL-WV 197 Query: 189 KKTSSIIDLYAMSKFPFS----IQYWMWIAFFC------SFAIKIPMFPFHTWLPNAHVQ 238 T+ + + F F +QY C F I MFPFH+W P+ + Sbjct: 198 NATNQLAAMGQGPTFMFDELARLQYDETFQIICFGLLAVGFGSLISMFPFHSWSPDGYAG 257 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTA S+ AG++ K+GGYG IR L +FPL ++++APVI L+++ ++YA+ +++ Q D Sbjct: 258 APTAVSMIHAGVLKKIGGYGLIRLGLMVFPLGAKFWAPVIAVLAVVNVLYAAFIALAQKD 317 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K ++ YSS++HMGYV I + + + + GA+ M +HG++S+ F +G IY++ HTR+ Sbjct: 318 LKYVVGYSSVSHMGYVLIAVAALNITSINGAVAMMFAHGVMSALFFSMIGFIYEKTHTRN 377 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 I GGL H MPR AV ++ MA +GLPGT FIGEF + + + AV+ G++ Sbjct: 378 IAELGGLAHQMPRLAVGFLLAGMAGLGLPGTVNFIGEFTIFIGTVKVLPVHAVVGIAGII 437 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +A+YSL L V+FG + E LKDL E + + + + G++P Sbjct: 438 FTAVYSLRLIANVLFGPRRKEW-DHLKDLRGPELVPLVVLVFVIIITGVFP 487 >gi|307701317|ref|ZP_07638338.1| putative NDH-1 subunit M [Mobiluncus mulieris FB024-16] gi|307613478|gb|EFN92726.1| putative NDH-1 subunit M [Mobiluncus mulieris FB024-16] Length = 544 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 160/492 (32%), Positives = 269/492 (54%), Gaps = 26/492 (5%) Query: 2 NLPFLSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINF--IFSLFVWSVFDKG 58 ++P+L+++ P + V+ L GR +AL +S + + S Sbjct: 15 SIPWLTLLVAWPLVFALVLWLVKPLRPLGRE----IALAVSLVELAGVLVAAATSYNPAA 70 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 +FQ+ E Y WI S+ LGV+G+ +++++L T LTP ILSSW+ Q+ A Sbjct: 71 APAFQLGESYPWIPAIGLSWALGVNGLGLVMIILATALTPLVILSSWREDQDADARAGYA 130 Query: 118 FLVL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE---RIYAAYKFFLYTF 172 L+L E+ ++ F + D+LLFY+ FEA L+P++ ++G +G E R +AA KF LY+ Sbjct: 131 GLILGLEACMVLIFTARDLLLFYLTFEAMLVPLYFLVGRFGHGEAARRRHAAIKFVLYSL 190 Query: 173 FGSIFMLFAIVVM--CWEKKTSSIIDLYAMSKF--------PFSIQYWMWIAFFCSFAIK 222 G + MLF ++ + T S L+ M P + + MW F +FAIK Sbjct: 191 AGGLVMLFGVIAVYVGAAPVTKSPAGLFHMDNLTALDLGSNPLA-YFTMWT-FLLAFAIK 248 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 PM P HTWLP A SV L G++ K+G +G I F LFP AS AP++ L+ Sbjct: 249 APMVPVHTWLPTTAAVARGGTSVLLVGVLDKVGTWGMIMFCWQLFPAASAAVAPLVIVLA 308 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 +I+I++ +L ++ D+ +L++++SI+H G++ + ++ G ++ +EGAM M++HG+ + Sbjct: 309 VISILWGALAAIASKDLMRLVSFTSISHFGFMVMALYIGSQTAIEGAMLYMVAHGVSIAG 368 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 +F G + +R T++I AY G P A + + +A +GLPG SGF+ E+L+++ Sbjct: 369 MFLLSGWLTERGGTQEIAAYSGFQRVTPTLAGLFLTSGLAAIGLPGLSGFLPEYLILVGT 428 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 F+ S A+ A GVVL+A+Y L Y+ + G + +V+ DL RE+ ++ P+ + Sbjct: 429 FKVSLAAALFAVLGVVLAAVYLLLPYQNLFTGPTDA-RVRTAPDLGSREKLIMMPVILAM 487 Query: 463 VFFGIYPVPIRD 474 + G P P D Sbjct: 488 LGLGFLPGPTLD 499 >gi|189459777|ref|ZP_03008562.1| hypothetical protein BACCOP_00406 [Bacteroides coprocola DSM 17136] gi|189433506|gb|EDV02491.1| hypothetical protein BACCOP_00406 [Bacteroides coprocola DSM 17136] Length = 494 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 142/417 (34%), Positives = 242/417 (58%), Gaps = 8/417 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 +Y +GVDGIS+++++L++ + +SWK ++ +EY + F +L + V G F+S D+ Sbjct: 76 AYSVGVDGISVVMLLLSSIIVFTGTFASWK-LKPLTKEYFLWFTLLSTGVFGFFISTDLF 134 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSS 193 ++F+E +LIPM+++IGVWG ++ YAA K L GS F+L I+ + + +T + Sbjct: 135 TMFMFYEVALIPMYLLIGVWGSGKKEYAAMKLTLMLMGGSAFLLIGILGIFYGAGGETMN 194 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 I+++ + + P +Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 195 ILEIVKL-QIPTEMQRIFFPMIFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 253 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P + + L+ I+++Y + ++VQTD+K + AYSS++H G Sbjct: 254 LGGYGCFRVAMYLMPTGAAIWGDFFLVLTTISVVYGAFSAVVQTDLKYINAYSSVSHCGL 313 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + K GA+ QMLSHGL+++ F +G+IY R HTRDI GL+ MP + Sbjct: 314 VLFALLMMTKVSATGAILQMLSHGLMTALFFALIGMIYGRTHTRDIRQLSGLMKIMPFLS 373 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYR 429 V ++ +AN+GLPG SGF+ E V + FQ++++ ++A+ +V++A+Y L + Sbjct: 374 VGYVIAGLANLGLPGLSGFVAEMTVFVGSFQHADSFHRICTIIATMSIVITAVYILRVVG 433 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 K+++G + +L D + ER V + V G+ P + S + II Sbjct: 434 KILYGTCTNPEHLKLTDATWDERFAVICLIVAVAGLGLAPYWVSHVISGSVEPIISQ 490 >gi|332885909|gb|EGK06153.1| hypothetical protein HMPREF9456_00027 [Dysgonomonas mossii DSM 22836] Length = 492 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 145/416 (34%), Positives = 239/416 (57%), Gaps = 10/416 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+L+++LT + +SW ++ +++ + +L V G F+SLDM Sbjct: 77 YAIGVDGISVLMLLLTAVIIFTGTFASW-NMNPLPKDFFMWLTLLSVGVYGFFISLDMFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS---- 192 + F+E +LIPM+++IG+WG + Y+A K L GS F+ I + + T+ Sbjct: 136 MFFFYEIALIPMYLLIGLWGTGRKEYSAMKLTLMLMGGSAFLAVGIFGIYFNSSTTGDYT 195 Query: 193 -SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 +I+++ A + P + QYW++ F F + +FPFHTW P+ H APTA S+ AG++ Sbjct: 196 FNILEVAANNAIPVATQYWIFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVL 255 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 +K+GGYGC R + L P A+ + + L+ I++IY +L ++ QTD+K + AYSS++H Sbjct: 256 MKLGGYGCFRIAMRLMPEAAHELSWIFIILTGISVIYGALGAISQTDLKYINAYSSVSHC 315 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V I ++ + GA+ QMLSHGL+++ F +G+IY R HTRDI GGL+ MP Sbjct: 316 GLVLFAILMMNQTAMTGAVMQMLSHGLMTALFFALIGMIYGRTHTRDIRQMGGLMKIMPF 375 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWL 427 +V ++ MA++GLPG SGF+ E + + FQ+S+ ++A +V +A+Y L + Sbjct: 376 LSVCYVIAGMASLGLPGLSGFVAEMTIFVGSFQHSDLFHRIFTIVAVSSIVATAVYILKV 435 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 K+++G + +L D E+ + V G++P I D S L+ I Sbjct: 436 VGKILYGPVQDPHHLELTDAVWHEKVATVGLIVCVAGMGLFPSWISDLISASLAYI 491 >gi|325280131|ref|YP_004252673.1| proton-translocating NADH-quinone oxidoreductase, chain M [Odoribacter splanchnicus DSM 20712] gi|324311940|gb|ADY32493.1| proton-translocating NADH-quinone oxidoreductase, chain M [Odoribacter splanchnicus DSM 20712] Length = 490 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 147/413 (35%), Positives = 241/413 (58%), Gaps = 8/413 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L++ + I +SWK ++ REY + F +L V G F+S D+ Sbjct: 77 YSVGVDGISVAMLLLSSIIVFTGIFTSWK-MELLPREYFMWFCLLSIGVFGFFISTDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 ++F+E +LIPM+++IGVWG ++ YAA K L GS +L I+ + + +S I Sbjct: 136 MFMFYEIALIPMYLLIGVWGTGKKEYAAMKLTLMLMGGSALLLVGILGIYFNSGATSMNI 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +D+ A P +Q W + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 LDI-ARQHIPDELQRWFFPLTFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 254 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A++ + + L+ I+++Y + ++VQTD+K + AYSS++H G V Sbjct: 255 GGYGCFRVAICLMPEAAKELSWIFIILTGISVVYGAYSAIVQTDLKYINAYSSVSHCGLV 314 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I ++ V GA+ QMLSHGL+++ F +G+IY R HTRDI GGL+ +P Sbjct: 315 LFAILMLNQTAVTGAIMQMLSHGLMTALFFALIGMIYGRTHTRDIREMGGLMKIIPFLGT 374 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYRK 430 ++ +A++GLPG SGF+ E + + FQ+++ + +LA +V++A+Y L + K Sbjct: 375 CYVIAGLASLGLPGLSGFVAEMTIFVGSFQHADVFHRVMTILACTSIVITAVYILRVVGK 434 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 +++G E QL D ER V + + G+ P+ I D L+ + Sbjct: 435 LLYGKVVDEHHLQLTDAVWYERFSVIVLILAIAGIGLAPLWISDMIRESLNGL 487 >gi|50346835|ref|YP_053206.1| NADH dehydrogenase subunit 4 [Nymphaea alba] gi|68052590|sp|Q6EW00|NU4C_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|50250380|emb|CAF28646.1| ndhD [Nymphaea alba] Length = 500 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 140/382 (36%), Positives = 232/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E ++WI+ F + LG+DG+SI ++LT F+T ++W + N R + L + Sbjct: 63 QLEEDFNWINLFDFHWRLGIDGLSIGPILLTGFITTLATSAAWP-VTRNSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M ++ ++ +P +++ + F ++A+K P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPTLNFETLANQSYPVALEIIFYFGFLIAYAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+L S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRVNMELLPHAHSIFSPWLMIVGTIQIIYAALTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ R + Sbjct: 302 KKRIAYSSVSHMGFIIIGISSITDAGLNGAILQIISHGFIGAALFFLAGTSYDRIRLRYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MPR + F+MA++ LPG SGF+ EF++ + + + + + Sbjct: 362 NEMGGIAILMPRIFTMFSSFSMASLALPGMSGFVAEFVIFLGIITSPKYLVMSKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMSRQMFYG 443 >gi|313183871|ref|YP_004021714.1| NADH-plastoquinone oxidoreductase subunit 4 [Prunus persica] gi|309321483|gb|ADO65024.1| NADH-plastoquinone oxidoreductase subunit 4 [Prunus persica] Length = 500 Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 160/496 (32%), Positives = 268/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L++V LP +I F + G ++ + I I + + + + F Sbjct: 5 PWLTLVVVLPIFAGSLIFFLPHRGNKVIRWYTIC--ICLIELLLTTYAFGYRFQLDDPLM 62 Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI++F Y LG+DGISI ++LT F+T L++ + + + R + L + Sbjct: 63 QLTEDYKWINFFDFYWRLGIDGISIGPILLTGFITTLATLAT-RPVTRDSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 122 YSGQIGPFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSVFLLIG 181 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSANQSYPVALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---TVAVLASF- 415 GG+ +P+ + +MA++ LPG SGF+ E ++ + + +L +F Sbjct: 362 DEMGGMAIAIPKIFTTFSILSMASLALPGMSGFVAELIIFFGILTSQKYLLMTKILITFV 421 Query: 416 ---GVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 G++L+ +YSL + R++ +G D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVSISILLPVIGIGVYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + +II NY Sbjct: 482 VSSLSVDKVEAIISNY 497 >gi|212550415|ref|YP_002308732.1| NADH dehydrogenase I subunit M [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548653|dbj|BAG83321.1| NADH dehydrogenase I subunit M [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 491 Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 142/419 (33%), Positives = 241/419 (57%), Gaps = 9/419 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 SY +GVDGIS++++VL+ + + SSW +EY + + +L V G F+S+D+ Sbjct: 75 SYTVGVDGISMVMLVLSVLIVFAGVFSSWN--VNMAQEYFLWYCLLSVGVFGFFISIDLF 132 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 +F+E +LIPM+++IG+WG + Y+A K L GS F++ I+ + + +++ Sbjct: 133 SMVLFYEVALIPMYLLIGLWGTGRKEYSAMKLTLMLMGGSAFLMVGIIGIYYSSGATTM- 191 Query: 196 DLYAMSKFPFSIQYWMWI--AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++ + K I+Y +W A F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 192 NILEIVKLHIPIEYQLWFFPATFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 251 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC+R + L P A+ + L+ I+++Y + ++VQTD+K + AYSS++H G Sbjct: 252 LGGYGCLRVAIYLMPEAAYKLGWIFLVLTGISVVYGAFSAIVQTDLKYINAYSSVSHCGL 311 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V I ++ + GA+ QMLSHGL+++ F +G+IY + HTRDI GGL+ MP + Sbjct: 312 VLFAILMMNRTAMTGAIMQMLSHGLMTALFFALIGLIYGQTHTRDIREMGGLMKIMPFVS 371 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 ++ +A++GLPG SGF+ E + + FQ+S+ + V+ +V++A+Y L Sbjct: 372 ACYVIAGLASLGLPGLSGFVAEITIFVGSFQHSDLFHRILTVITCCSIVITAVYILRTIG 431 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 KV +G + L D E+ + + + F G+YP+ + + S L SI+ T Sbjct: 432 KVFYGTIQNRHHIGLSDAVWYEKVSIICLIIAISFIGMYPLGVSEIVSNSLGSIVAKLT 490 >gi|328884363|emb|CCA57602.1| NADH-ubiquinone oxidoreductase chain M [Streptomyces venezuelae ATCC 10712] Length = 525 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 162/440 (36%), Positives = 239/440 (54%), Gaps = 25/440 (5%) Query: 55 FDKGR-SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQEN 110 FD + S+ Q WI HLGVDGIS+ L+VLT LT C L S+ + Sbjct: 66 FDHDQPSTMQATTDITWIKALDVRIHLGVDGISLPLLVLTALLTFLCALYSYFKMPAGPS 125 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + ++ LVLES + F LD++LF++ FE LIPM+ +I WGG + AA+KF LY Sbjct: 126 PKGFVALLLVLESGTLATFAVLDLVLFFLAFEMVLIPMYFLIARWGGEGKQAAAWKFILY 185 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS+ ML ++++ + T ++ L + S+Q +A A+K PM+P Sbjct: 186 TLLGSVVMLLGLLLIGVKAGTFDMVALATDNGRGLTTSVQVIAVLAIGIGLAVKTPMWPL 245 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H+WLP+AH APT GSV LAG++LKMG YG +R +LP+ P + FAP + ++ IIY Sbjct: 246 HSWLPDAHTAAPTVGSVLLAGVLLKMGTYGFVRIVLPIAPDGMRTFAPSLAAFAVAGIIY 305 Query: 289 ASLVSMV------QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 SL + + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGLV+ Sbjct: 306 GSLACLALARPGNKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANVAHGLVTGL 365 Query: 343 LFFCVGVIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 LFF VG + DR T D+ G L PR ++ +A++GLPG +GF GE L Sbjct: 366 LFFLVGAVKDRYGTADLDTLAGATGAALYGRAPRLGALLAFAAVASLGLPGLAGFWGEML 425 Query: 398 VIMSVFQNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 + F + T + +FG +L+A Y L + R+V G + + D+ Sbjct: 426 ALFGAFDPAEGLSRPAFLTFMAIGAFGTLLTAAYLLLVVRRVCMGGPRPAGETPIADVQG 485 Query: 450 RERCMVYPIAVLTVFFGIYP 469 E P+ LTV G++P Sbjct: 486 YEFAAWTPLVALTVLAGLWP 505 >gi|323148954|ref|YP_004222508.1| NADH-plastoquinone oxidoreductase subunit 4 [Smilax china] gi|308742645|gb|ADO33496.1| NADH-plastoquinone oxidoreductase subunit 4 [Smilax china] Length = 501 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 153/436 (35%), Positives = 246/436 (56%), Gaps = 12/436 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WI+ F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 64 QLEEDLKWINSFNFHWKLGIDGLSVGPILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E L+P+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 123 YSGQIGSFSSRDLLLFFIMWELELVPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 182 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +D + +P +++ + F +A+K P+ P HTWLP+ H +A Sbjct: 183 VLGMGLYGSNEPTLDFERLVNQSYPAALEIIFYFGFLIVYAVKSPIIPLHTWLPDTHGEA 242 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+L S Q ++ Sbjct: 243 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVGTIQIIYAALTSFGQRNL 302 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG+ IGI S G+ GA+ Q+LSHG + +ALFF G DR+ + Sbjct: 303 KKRIAYSSVSHMGFTIIGIGSITNMGLNGAILQILSHGFIGAALFFLAGTSCDRIRLVYL 362 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV---AVLASF- 415 GG+ MP+ + F+MA++ LPG SGF+ E +V + +S + VL +F Sbjct: 363 DEMGGISVLMPKIFTMFSSFSMASLALPGMSGFVAESVVFFGIITSSKYLFMPKVLITFV 422 Query: 416 ---GVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 G++L+ +Y L + R++ +G L D RE ++ + + ++ GIYP Sbjct: 423 MAIGMILTPIYLLSMLRQMFYGYKLFNVPNYNLVDSGPRELFVLICLFLPVIWIGIYPDF 482 Query: 472 IRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 483 VLLLSVDKVQTILSNY 498 >gi|167764938|ref|ZP_02437059.1| hypothetical protein BACSTE_03330 [Bacteroides stercoris ATCC 43183] gi|167697607|gb|EDS14186.1| hypothetical protein BACSTE_03330 [Bacteroides stercoris ATCC 43183] Length = 495 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 143/404 (35%), Positives = 229/404 (56%), Gaps = 7/404 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L+ + +SW+ +Q +EY + F +L V G F+S D+ Sbjct: 77 YSVGVDGISVAMLLLSAIIVFTGTFASWR-LQPLTKEYFLWFTLLSMGVFGFFISTDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSI 194 ++F+E +LIPM+++IGVWG + YAA K L GS F+L I+ + + T ++ Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYAAMKLTLMLMGGSAFLLIGILGIYFGSGATTMNL 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ + P Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 LEIAQLHNIPVEQQRIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 255 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A+Q + L+ I+++Y + + VQTD+K + AYSS++H G V Sbjct: 256 GGYGCFRIAMYLMPEAAQELGWIFLVLTGISVVYGAFSACVQTDLKYINAYSSVSHCGLV 315 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP AV Sbjct: 316 LFAILMMNRTACTGAVLQMLSHGLMTALFFALIGMIYGRTHTRDVRELSGLMKIMPFLAV 375 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV----AVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGFI E + FQ+ +T V+A +V++A+Y L L K Sbjct: 376 SYVIAGLANLGLPGLSGFIAEMTIFNGAFQHPDTFHRAWTVIACTSIVITAVYILRLVGK 435 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 +++G + L D + ER V + G+ P+ I + Sbjct: 436 ILYGTCTNKHHLTLTDATWDERTAVIILIACVAGLGLAPLWISN 479 >gi|149195039|ref|ZP_01872131.1| proton-translocating NADH-quinone oxidoreductase, chain M [Caminibacter mediatlanticus TB-2] gi|149134752|gb|EDM23236.1| proton-translocating NADH-quinone oxidoreductase, chain M [Caminibacter mediatlanticus TB-2] Length = 475 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 144/397 (36%), Positives = 231/397 (58%), Gaps = 7/397 (1%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 L +D +S+ +++LT L + +SW ++ Y ++ + G F++ ++L F+ Sbjct: 73 LQIDALSVAMLILTAALLILVVFTSWNEKKQ--AAYFSLLILFSGPIFGVFMTTNVLWFF 130 Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 +F+E +L+PM +IG+WG RIYAA KFF+YT ++FM ++ K + D Sbjct: 131 MFWELTLVPMLFLIGIWGAENRIYAAIKFFIYTHVFAMFMFVGFYLLY---KQTGYWDFT 187 Query: 199 AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 + + + +W F FA K+P+FPFHTWLP+AHVQAP++ SV LAGI+LKMG YG Sbjct: 188 LIKEVALATPALIWWLMFLGFAAKLPLFPFHTWLPDAHVQAPSSISVILAGILLKMGAYG 247 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 IRF + L P+ + FA + FL L +YA +++ + IKK++AYSSI+HMG V + I Sbjct: 248 LIRFTVELMPVTTLQFAKWMLFLGLATTLYAGFLAIYERHIKKMVAYSSISHMGLVVVAI 307 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 + G+ A+++M+ H LV S LF G ++ + HT + GG++ P + + ++ Sbjct: 308 STMTYDGLSAALYEMIGHALVISPLFLIAGWLHHKTHTWYMDEMGGIMKKAPYVSAIFIL 367 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSN-TVAVLASFGVVLSALYSLWLYRKVVFGVSK 437 MA +GLPGT GF+GE +I+S + VAV+A G++ SA Y +W R+ + G Sbjct: 368 AGMAALGLPGTMGFVGELTIIISAVKAYGWWVAVIALAGMI-SAGYIIWAIRRSIHGEMS 426 Query: 438 CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + +SL E+ + A+L V+FG+ P PI D Sbjct: 427 PIVAKADFSMSLAEKFALGVYAILIVYFGVNPQPIFD 463 >gi|289425640|ref|ZP_06427412.1| NADH dehydrogenase subunit M [Propionibacterium acnes SK187] gi|289153941|gb|EFD02634.1| NADH dehydrogenase subunit M [Propionibacterium acnes SK187] Length = 509 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 155/489 (31%), Positives = 268/489 (54%), Gaps = 26/489 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+++ LPF+G + + G R+ + S + + ++ + V G + Sbjct: 1 MSFPILTVIALLPFVGGVITMM--LRGAAARA---TGMVFSLVTLVLGVYAFIV---GVN 52 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAF 118 + E + WI + Y LG DG+S+ +++L L P +L+ W E R AF Sbjct: 53 GTNLSETHRWIRAVGAWYALGGDGLSLTMILLVVILVPVVLLAEWHVGDDETARWSTGAF 112 Query: 119 ----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L+LE + I F + D+LLFY+ FEA+LIPM+ +I WGG R AA KF LY+ G Sbjct: 113 FGLALMLEGLAIYCFAATDVLLFYLMFEATLIPMYFLIAGWGGPRRGRAAMKFLLYSLAG 172 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + MLFA++ + + + DL A F +I +++ FF +FAIK PM P HTWLP+ Sbjct: 173 GLVMLFAVIGVGVHGGSFLLSDL-AKVDFSGAIGKELFVGFFIAFAIKAPMVPVHTWLPD 231 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 QA S L G++ K+G +G +R L LFP AS + P + L++I++++ ++++ Sbjct: 232 TAEQATAGASSLLVGLLDKIGTFGMLRLCLGLFPAASDWATPFVLTLAIISVLWGAMMAA 291 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 +D+ + ++Y+S++H G++ IGIF+ + + G++F M +HG ++ALF +G + R Sbjct: 292 TSSDLMRFVSYTSVSHFGFMVIGIFALTTTSITGSIFYMFNHGFSTAALFLVLGFLVRRG 351 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T + YGG+ P A + +A + LPGT F+ EF+ + + +++ Sbjct: 352 GTAKVDGYGGVQKVAPVLAGTFLFAGLATLSLPGTGNFVSEFMALAGAWSRHPIYVAIST 411 Query: 415 FGVVLSALYSLWLYRKVVFGVSK--CEKV---------QQLKDLSLRERCMVYPIAVLTV 463 G+VL+A+Y L YR+ + G + E+V +Q+ DL+ RE+ ++ P+ +L + Sbjct: 412 IGMVLAAVYVLVTYRRTMTGPVQGVSEQVSDLPVQGVSEQVSDLNGREKLVLAPLIILLL 471 Query: 464 FFGIYPVPI 472 FG +P P+ Sbjct: 472 VFGFFPRPM 480 >gi|254433337|ref|ZP_05046845.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Nitrosococcus oceani AFC27] gi|207089670|gb|EDZ66941.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Nitrosococcus oceani AFC27] Length = 529 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 164/492 (33%), Positives = 266/492 (54%), Gaps = 20/492 (4%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS++ FLP + +L + VALG++ + SL + +FD + Q Sbjct: 7 PLLSLLIFLPVVAGISLLRIR----NKHRILSVALGVAVAELLLSLILLGLFDPNQDGMQ 62 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E + WI Y LGVDG+S+L V LT +T IL+S +SI+ Y L LE Sbjct: 63 FVEQHSWIPTLNIDYLLGVDGLSVLFVPLTALITVAVILASRRSIKTLSSLYFALLLFLE 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFA 181 + IG + +LD+ LF++F+E +L P+F +I +WG G R YAA K+ L+ G I +LF Sbjct: 123 GITIGVYCTLDLALFFLFWELTLPPLFFLISLWGIGVHRRYAALKYVLFMLTGGILLLFG 182 Query: 182 IVVMCWEKKTSSIIDLYA----------MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 +++ + I A + P + Q +++ F FAIK P+FPFH W Sbjct: 183 FILLGLNHANETGIAAPAGLSFNYMELLQTPIPLATQSIVFLLLFFGFAIKAPLFPFHVW 242 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP-LASQYFAPVIFFLSLIAIIYAS 290 LP ++ P + + + G LK+G +G IRF +PL P ASQYF ++ L I IY + Sbjct: 243 LPTMAMEGPASITAIIVG--LKLGLFGIIRFAIPLAPQAASQYFV-LMMLLGAIGAIYGA 299 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 L+++ QT++++++AYSSI+H G+V IG + G++GA+FQ+ + G+V+S +F G + Sbjct: 300 LIALKQTNLRRMLAYSSISHAGFVLIGAAAFNIQGIQGAVFQLFNFGIVASGIFLIAGFL 359 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 RL + ++ A GG MP A + + +A++G+PGT+GF E L+++ F+ + Sbjct: 360 QYRLGSTELTALGGAARPMPILASLFFILGLASIGVPGTNGFAAEHLIVIGAFKAHIGMG 419 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 + G++LSA Y L Y+K G V++ DL RE + + L + G++P Sbjct: 420 LAVLLGIILSAAYYLVFYQKAFLGPVTRATVKETVDLRSREYWIAGTMVSLALLLGLFPQ 479 Query: 471 PIRDTFSVPLSS 482 I T L + Sbjct: 480 QILTTTDKTLQA 491 >gi|256785897|ref|ZP_05524328.1| NADH dehydrogenase subunit NuoM2 [Streptomyces lividans TK24] gi|289769790|ref|ZP_06529168.1| NADH dehydrogenase subunit NuoM2 [Streptomyces lividans TK24] gi|289699989|gb|EFD67418.1| NADH dehydrogenase subunit NuoM2 [Streptomyces lividans TK24] Length = 534 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 163/446 (36%), Positives = 240/446 (53%), Gaps = 39/446 (8%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW-KSIQENF------ 111 S Q WI HLG+DGIS+ L+VLT LT C L S+ K E Sbjct: 72 SKMQASTDISWIPALDVRIHLGIDGISLPLLVLTALLTFLCALYSYLKQRHERLTPRAPG 131 Query: 112 ---REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFF 168 + ++ LVLES + F LD++LF++ FE LIPM+ +I WGG R AA+KF Sbjct: 132 PSPKAFVALLLVLESGTLATFAVLDLILFFLAFEMVLIPMYFLIARWGGEGRAGAAWKFI 191 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS-----KFPFSIQYWMWIAFFCSFAIKI 223 L+T GS+ ML ++++ T+ D+ A++ S+Q +A A+K Sbjct: 192 LFTLLGSVVMLLGLLLIG---ITAGTFDMVALATDNGRSLTTSVQVIAVLAIGLGLAVKT 248 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 PM+P H+WLP+AH APT GSV LAG++LKMG YG IR LLP+ P + FAP + ++ Sbjct: 249 PMWPLHSWLPDAHTAAPTVGSVLLAGVLLKMGTYGFIRILLPVAPEGFRIFAPYLAAFAV 308 Query: 284 IAIIYASLVSM------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 + IIY SL + + D+K+LIAYSS+ HMG+V +G+ + +GV GA+F ++HG Sbjct: 309 VGIIYGSLACLALARRGAKGDLKRLIAYSSVGHMGFVLLGVATMTPTGVNGALFANIAHG 368 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYG-----GLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 L++ LFF VG + DR T D+ L PR ++ +A++GLPG +GF Sbjct: 369 LITGLLFFVVGALKDRTGTTDLDTLAEESGHALYGKAPRLGGLLAFAAVASLGLPGLAGF 428 Query: 393 IGEFLVIMSVFQNSNTVA--------VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-Q 443 GE L + F + ++ +A+FG +L+A Y L + R+V G E Q + Sbjct: 429 WGEMLALFGAFDPHDDLSRPAFLTFMAIAAFGTLLTAAYMLIVVRRVCMGAVPQEAPQPK 488 Query: 444 LKDLSLRERCMVYPIAVLTVFFGIYP 469 D+ E P+ LTV G++P Sbjct: 489 FADVCTYEFAAWTPLVALTVVAGLWP 514 >gi|229577804|ref|YP_002836140.1| NADH-plastoquinone oxidoreductase subunit 4 [Megaleranthis saniculifolia] gi|226933932|gb|ACO92065.1| NADH-plastoquinone oxidoreductase subunit 4 [Megaleranthis saniculifolia] Length = 500 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 161/497 (32%), Positives = 273/497 (54%), Gaps = 13/497 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ LP ILF + G ++ + + + + F + F Sbjct: 3 DFPWLTIIVVLPIFAGTFILFFPHRGNKVIRWYTICICLLELLLTAYAFCY-YFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ + Y WI++F + LG+DG+SI ++LT F+T L++ +++ R + L Sbjct: 62 IQLEQDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAACPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AIVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ M ++ A +P +++ ++ F ++A+K+P+ P HTWLP+ H + Sbjct: 181 GVLGMGLYGSNEPTLNFETSANQSYPVALEIILYFGFLIAYAVKLPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGAIQIIYAASTSSGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ QM+SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQMISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 361 LDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSQKYLLMPKILITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSK-CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +YSL + R++ +G + + D RE + I + + GIYP Sbjct: 421 VTAIGMILTPIYSLSMLRQMFYGYKQFNSQNSPFLDSGPRELFISICIFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + +II NY Sbjct: 481 FVLSLSIDKVETIISNY 497 >gi|313199755|ref|YP_004021369.1| NADH-plastoquinone oxidoreductase subunit 4 [Theobroma cacao] gi|309321319|gb|ADO64862.1| NADH-plastoquinone oxidoreductase subunit 4 [Theobroma cacao] gi|328924828|gb|ADO64939.2| NADH-plastoquinone oxidoreductase subunit 4 [Theobroma cacao] Length = 500 Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 159/495 (32%), Positives = 273/495 (55%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPHRGNKLIKWYTICICIFELLLTTYAFCYH-FRLDDPLIQ 63 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI++F Y +G+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWINFFDFYWRVGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIGV 182 Query: 183 VVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ ++ +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGIGLYGSNEPTLNFETLANQSYPVALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLIIVGTMQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSSI+HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSISHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ +P+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGMAIPIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +YSL + R++ +G D RE + I + + GIYP + Sbjct: 423 AIGMILTPIYSLSMSRQMFYGYKLFNAPSSYFFDSGPRELFVSISIFLPVIGIGIYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + +I+ NY Sbjct: 483 LSLSGEKVETILYNY 497 >gi|288926080|ref|ZP_06420008.1| NADH dehydrogenase I, M subunit [Prevotella buccae D17] gi|288337120|gb|EFC75478.1| NADH dehydrogenase I, M subunit [Prevotella buccae D17] Length = 490 Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 137/400 (34%), Positives = 237/400 (59%), Gaps = 7/400 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 Y +GVDGIS+++++L+ + +SW+ ++ +EY + F++L + V G F+S+D+ Sbjct: 65 EYAIGVDGISVVMILLSAIIVFTGTFASWQ-LEPMKKEYFLWFVLLSTGVFGFFISVDLF 123 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + YAA K L GS ++ I+ + + T + Sbjct: 124 TMFMFYEVALIPMYLLIGVWGTGAKEYAAMKLTLMLMGGSALLIIGILGIYYFSGATTMN 183 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 I ++ A++ P ++Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 184 INEISALANIPENVQKVFFPFVFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 243 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A +APV L+ I+++Y + + VQTD+K + AYSS++H G Sbjct: 244 LGGYGCFRIAMYLLPGALDTWAPVFLVLTTISVVYGAFSACVQTDLKYINAYSSVSHCGM 303 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F +G+IY R TRD+ GGL+ +P + Sbjct: 304 VLFALLMMTQTAITGAILQMLSHGLMTALFFAVIGMIYHRAGTRDVRYLGGLMKIVPFLS 363 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYR 429 ++ +AN+GLPG SGF+ E + + F+N++T ++A +V++A+Y L + Sbjct: 364 CGYVIAGLANLGLPGFSGFVAEMTIFVGSFENADTFHRACTIIACTSIVVTAVYILRVVG 423 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K++F ++ +L D S ER V + G++P Sbjct: 424 KILFQQVPNQEFYKLHDASWDERVAVIGLIACVAGLGLFP 463 >gi|126695958|ref|YP_001090844.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9301] gi|126543001|gb|ABO17243.1| putative NADH Dehydrogenase (complex I) subunit (chain 4) [Prochlorococcus marinus str. MIT 9301] Length = 513 Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 168/503 (33%), Positives = 276/503 (54%), Gaps = 16/503 (3%) Query: 1 MNL---PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFV-WSVF 55 MNL P+LS V LP +G ++ F SS G ++L I+F+ + V + F Sbjct: 1 MNLESFPWLSSVVLLPLIGAIIMPFLSSKEGEDNTLPRNISLSFLFIDFLLIIGVLFQKF 60 Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 + SS Q++E W+ + LGVDG+S LV L+ +T +SWK I++ Y Sbjct: 61 NTSDSSLQLVERASWLPSIGLEWSLGVDGLSAPLVALSGLITFLSAAASWK-IKKKSNLY 119 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 LV S FLS D LLF++ +E L+P++++I +WGG +++YAA KF LYT Sbjct: 120 FALLLVQASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGKKKLYAATKFILYTALA 179 Query: 175 SIFMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 S+ +L + + + T ++ I S+ ++ F F +K+P+FP HTWLP Sbjct: 180 SLLILISGLALALSGDTFTLNITDITNKHVTGSLALLSYLGFLIGFGVKLPIFPLHTWLP 239 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 +AH +A S+ LAGI+LKMGGY +RF + + P AP + L +I IIY +L + Sbjct: 240 DAHGEANAPVSMLLAGILLKMGGYALLRFNVQILPEVHLQIAPALIILGIINIIYGALNA 299 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+R Sbjct: 300 FAQDNVKRRIACSSVSHMGFVLLGIGAVDALGISGAMLQMISHGLIAAAMFFVTGSFYER 359 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------N 407 +T I GGL +P + ++A++ LPG SGFI E V + + Sbjct: 360 TNTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEGFSSIFR 419 Query: 408 TVAVL-ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 ++ +L A+ G+VL+ +Y L + R+V FG + + +K+++ RE + + + + T+ G Sbjct: 420 SITILIAAIGLVLTPIYLLSMCRRVFFG-PRIPALATVKEMNGRELTIGFSLLLPTLVIG 478 Query: 467 IYPVPIRDTFSVPLSSIIENYTL 489 +P + + +++ + TL Sbjct: 479 FWPKIAINLYESSTNALSQQLTL 501 >gi|157413011|ref|YP_001483877.1| NAD(P)H-quinone oxidoreductase subunit 4 [Prochlorococcus marinus str. MIT 9215] gi|157387586|gb|ABV50291.1| putative NADH Dehydrogenase (complex I) subunit (chain 4) [Prochlorococcus marinus str. MIT 9215] Length = 513 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 166/484 (34%), Positives = 269/484 (55%), Gaps = 18/484 (3%) Query: 1 MNL---PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSLFV-WSVF 55 MNL P+LS + LP +G ++ F SS G ++L I+F+ + V + F Sbjct: 1 MNLESFPWLSSIVLLPLIGALIMPFLSSKEGEDNTLPRNISLSFLLIDFLLIVGVLFQKF 60 Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 + SS Q++E W+ + LGVDG+S L+ L+ +T +SWK I++ Y Sbjct: 61 NTSDSSLQLVERASWLPSIGLEWSLGVDGLSAPLIALSGLITFLSAAASWK-IKKKSNLY 119 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 LV S FLS D LLF++ +E L+P++++I +WGG +++YAA KF LYT Sbjct: 120 FALLLVQASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGKKKLYAATKFILYTALA 179 Query: 175 SIFMLFAIVVMCWEKKT--SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 S+ +L + + + T +I DL S+ ++ F F +K+P+FP HTWL Sbjct: 180 SLLILISGLALALSGDTFTLNITDL-TNKHVTGSLALLSYLGFLIGFGVKLPIFPLHTWL 238 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH +A S+ LAGI+LKMGGY +RF + + P AP + L +I IIY +L Sbjct: 239 PDAHGEANAPVSMLLAGILLKMGGYALLRFNVQILPEIHLQIAPALIILGIINIIYGALN 298 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+ Sbjct: 299 AFAQDNVKRRIACSSVSHMGFVLLGIGAVDALGISGAMLQMISHGLIAAAMFFVTGSFYE 358 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------ 406 R +T I GGL +P + ++A++ LPG SGFI E V + + Sbjct: 359 RTNTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEGFSSIF 418 Query: 407 NTVAVL-ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 ++ +L A+ G+VL+ +Y L + R+V FG + + +K+++ RE + + + + T+ Sbjct: 419 RSITILIAAIGLVLTPIYLLSMCRRVFFG-PRIPALATVKEMNGRELTIGFSLLLPTLVI 477 Query: 466 GIYP 469 G +P Sbjct: 478 GFWP 481 >gi|317503344|ref|ZP_07961391.1| NADH-quinone oxidoreductase subunit M [Prevotella salivae DSM 15606] gi|315665523|gb|EFV05143.1| NADH-quinone oxidoreductase subunit M [Prevotella salivae DSM 15606] Length = 500 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 139/417 (33%), Positives = 243/417 (58%), Gaps = 7/417 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 +Y +GVDGIS+++++L+ + +SW+ ++ +EY + F++L V G F+S D+ Sbjct: 76 AYSVGVDGISVVMILLSAVIVFTGTFASWQ-LEPMKKEYFLWFVLLSIGVFGFFISTDLF 134 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + YAA K L GS ++ I+ + + T + Sbjct: 135 TMFMFYEVALIPMYLLIGVWGTGPKEYAAMKLTLMLMGGSALLIIGILGIYYFSGATTMN 194 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 I ++ A+ P ++Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 195 INEIAALHNIPVAVQKVFYPFIFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 254 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A++ + + L+ +++Y +L + VQTD+K + AYSS++H G Sbjct: 255 LGGYGCFRIAMYLLPEAAEQLSWIFLILTTCSVVYGALSACVQTDLKYINAYSSVSHCGM 314 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F C+G+IY R TRD+ GGL+ +P + Sbjct: 315 VLFALCMLTQTAITGAVLQMLSHGLMTALFFACIGMIYHRAGTRDVRYLGGLMKVIPFLS 374 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V +V +AN+GLPG SGF+ E + + FQN + ++A +V++A+Y L + Sbjct: 375 VSYVVAGLANLGLPGFSGFVAEMTIFVGSFQNGDMFHRVCTIIACSSIVITAVYILRVVG 434 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 K++F K +L D + ER + + G++P+ + + S + II++ Sbjct: 435 KILFQKIANPKFLELHDATWDERFAIGGLIFCVAGLGMFPLWVDNVISGAVGPIIQH 491 >gi|108804462|ref|YP_644399.1| proton-translocating NADH-quinone oxidoreductase subunit M [Rubrobacter xylanophilus DSM 9941] gi|108765705|gb|ABG04587.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rubrobacter xylanophilus DSM 9941] Length = 484 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 142/411 (34%), Positives = 232/411 (56%), Gaps = 2/411 (0%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFL 95 A+G++ + + +L+++ F + + + WI+ Y +G+DGI + L+ L Sbjct: 31 AIGVAAVPVLLALYIYFAFGDDLDAPALSQELTWIESLDIGYRVGLDGIGFGMFFLSALL 90 Query: 96 TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 T +++SW I+EN Y + E ++G F S D++LFY+FFE +LIPM++++G+W Sbjct: 91 TLIAVVASWD-IRENLGFYFALLFLAEVGMLGVFASRDLVLFYVFFEITLIPMYLMVGIW 149 Query: 156 GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF 215 G R AA KFF+YTF GS ML + + T SI +L + Q + + Sbjct: 150 GDENRRAAAIKFFIYTFLGSTAMLAGFLALGVLSGTFSIPELGEAGGLSRAAQIAIAVPV 209 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 IK+P P H WL + +V +P + +V L+G++ K+G +G ++ +PL P + F Sbjct: 210 LFGLLIKVPAVPLHGWLLDVYVSSPVSTNVVLSGVLPKLGTFGILKIAIPLLPDGVEPFL 269 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 P + L +I IIY + V+ +Q D+K L+AYSSI +G++ +G S G GA+FQ ++ Sbjct: 270 PYLAVLGVINIIYGAFVAFLQPDLKALVAYSSIGTLGFILLGAASANAVGYNGAVFQQVA 329 Query: 336 HGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGE 395 HGL S+ LF VG+I R TR I GGL MP ++ + +A MGLPG + F+ E Sbjct: 330 HGLYSALLFLLVGIIAARTGTRRISELGGLAARMPWAGGLLALGALAAMGLPGLAVFVSE 389 Query: 396 FLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD 446 F+ IM + VLA+ G++LSA+Y L++ +V+FG + +Q+ D Sbjct: 390 FMSIMGGYTTYPVQGVLAALGIILSAMYLLYMLARVIFGPIREPAYEQIGD 440 >gi|315608353|ref|ZP_07883342.1| NADH-quinone oxidoreductase subunit M [Prevotella buccae ATCC 33574] gi|315249983|gb|EFU29983.1| NADH-quinone oxidoreductase subunit M [Prevotella buccae ATCC 33574] Length = 503 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 137/400 (34%), Positives = 237/400 (59%), Gaps = 7/400 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 Y +GVDGIS+++++L+ + +SW+ ++ +EY + F++L + V G F+S+D+ Sbjct: 78 EYAIGVDGISVVMILLSAIIVFTGTFASWQ-LEPMKKEYFLWFVLLSTGVFGFFISVDLF 136 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + YAA K L GS ++ I+ + + T + Sbjct: 137 TMFMFYEVALIPMYLLIGVWGTGAKEYAAMKLTLMLMGGSALLIIGILGIYYFSGATTMN 196 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 I ++ A++ P ++Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 197 INEIAALANIPENVQKVFFPFVFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 256 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A +APV L+ I+++Y + + VQTD+K + AYSS++H G Sbjct: 257 LGGYGCFRIAMYLLPGALDTWAPVFLVLTTISVVYGAFSACVQTDLKYINAYSSVSHCGM 316 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F +G+IY R TRD+ GGL+ +P + Sbjct: 317 VLFALLMMTQTAITGAILQMLSHGLMTALFFAVIGMIYHRAGTRDVRYLGGLMKIVPFLS 376 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYR 429 ++ +AN+GLPG SGF+ E + + F+N++T ++A +V++A+Y L + Sbjct: 377 CGYVIAGLANLGLPGFSGFVAEMTIFVGSFENADTFHRACTIIACTSIVVTAVYILRVVG 436 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K++F ++ +L D S ER V + G++P Sbjct: 437 KILFQQVPNQEFYKLHDASWDERVAVIGLIACVAGLGLFP 476 >gi|91070147|gb|ABE11069.1| putative NADH dehydrogenase complex I subunit chain 4 [uncultured Prochlorococcus marinus clone HF10-11A3] Length = 513 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 168/504 (33%), Positives = 275/504 (54%), Gaps = 18/504 (3%) Query: 1 MNL---PFLSIVTFLPFLGVFVILF-SSYLGCGRRSFFGVALGISTINFIFSL-FVWSVF 55 MNL P+LS V LP +G ++ F SS G ++L I+F+ + ++ F Sbjct: 1 MNLESFPWLSSVVLLPLIGSLIMPFLSSKEGEDNTLPRNISLSFLFIDFLLIIGLLFQKF 60 Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 + SS Q++E W+ + LGVDG+S LV L+ +T +SWK I++ Y Sbjct: 61 NPADSSLQLVERASWLPSIGLEWSLGVDGLSAPLVALSGLITFLSAAASWK-IKKKSNLY 119 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 LV S FLS D LLF++ +E L+P++++I +WGG +++YAA KF LYT Sbjct: 120 FALLLVQASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGKKKLYAATKFILYTALA 179 Query: 175 SIFMLFAIVVMCWEKKT--SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 S+ +L + + + T +I DL S+ ++ F F +K+P+FP HTWL Sbjct: 180 SLLILISGLALALSGDTFTLNITDL-TNKHVTGSLALLSYLGFLIGFGVKLPIFPLHTWL 238 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH +A S+ LAGI+LKMGGY +RF + + P AP + L +I IIY +L Sbjct: 239 PDAHGEANAPVSMLLAGILLKMGGYALLRFNVQILPEVHLQIAPALIILGIINIIYGALN 298 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+ Sbjct: 299 AFAQDNVKRRIACSSVSHMGFVLLGIGAVDALGISGAMLQMISHGLIAAAMFFVTGSFYE 358 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------ 406 R +T I GGL +P + ++A++ LPG SGFI E V + + Sbjct: 359 RTNTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEGFSSIF 418 Query: 407 -NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 + ++A+ G+VL+ +Y L + R+V FG + + +K+++ RE + + + T+ Sbjct: 419 RSITILIAAIGLVLTPIYLLSMCRRVFFG-PRIPALATVKEMNGRELTIGFSLLFPTLVI 477 Query: 466 GIYPVPIRDTFSVPLSSIIENYTL 489 G +P + + +++ + TL Sbjct: 478 GFWPKIAINLYESSTNALSQQLTL 501 >gi|197107610|gb|ACH42385.1| NADH dehydrogenase subunit 4 [Scytothamnus australis] Length = 243 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 125/243 (51%), Positives = 175/243 (72%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 ++LTT + P C+L+SW + + + Y+I+FL +E ++I F +LD+L FYI FEA LIPM Sbjct: 1 IILTTLIFPLCLLASWSFEKGSLKXYLISFLSMELILILVFTTLDLLFFYISFEAVLIPM 60 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F+++G++G +R I AAY FFLYT GS+FML IV + + S+ + ++ F Sbjct: 61 FLVVGIYGSRQRKIRAAYMFFLYTLLGSLFMLIGIVYI-YLSAGSTNYEALSLVSFCLYD 119 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 120 QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 179 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 PLAS YF P++F LSL+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G G+E Sbjct: 180 PLASIYFTPLVFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVMGIE 239 Query: 328 GAM 330 A+ Sbjct: 240 AAL 242 >gi|90110725|ref|NP_051109.2| NADH dehydrogenase subunit 4 [Arabidopsis thaliana] gi|17433712|sp|P26288|NU4C_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 164/501 (32%), Positives = 280/501 (55%), Gaps = 21/501 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 3 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 61 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WID+F Y +G+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 62 IQLSEDYKWIDFFDFYWRMGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RFFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGISLYGSNEPTLNLELLANKSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLLVVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-------VAV 411 + GG+ ++P+ + + +MA++ LPG SGFI EF+V + + + Sbjct: 361 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFIAEFIVFFGIITSQKYFLISKIFIIF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL-----RERCMVYPIAVLTVFFG 466 + + G++L+ +Y L + R++ +G K+ +K+ S RE + I + + G Sbjct: 421 VMAIGMILTPIYLLSMLRQMFYGY----KLINIKNFSFFDSGPRELFLSISILLPIIGIG 476 Query: 467 IYPVPIRDTFSVPLSSIIENY 487 IYP + S + SI+ NY Sbjct: 477 IYPDFVLSLASDKVESILSNY 497 >gi|290486851|gb|ADD29810.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Aucuba japonica] Length = 500 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 160/477 (33%), Positives = 268/477 (56%), Gaps = 13/477 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P +I F + G ++ + + I + + +F + F Q Sbjct: 5 PWLTIIVVFPISAGSLIFFLPHRGNRVIRWYTIFICILELLLMTYVFRYH-FQSDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI++F + LG+DG SI L++LT F+T L++W +++ R + L + Sbjct: 64 LVEDYKWINFFDFRWRLGIDGFSIGLILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPIYLLLAIWGGKKRLYSATKFILYTAGGSVFLLLGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ A +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGVGLYGSYEPTLNFETSANQSYPVALEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHFLFSPWLIIVGTMQIIYAASTSSGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S ++G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGIGSITETGLNGALLQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGFI E +V + + + + Sbjct: 363 EMGGIAIPMPKIFTMFSSFSMASLALPGMSGFIAELIVFFGIITSQKFLLMPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G C D RE + I + + GIYP Sbjct: 423 AIGMILTPIYSLSMSRQMFYGYKLCNAPNSSFFDSGPRELFLSLSIFLPAIGIGIYP 479 >gi|225544172|ref|YP_002720162.1| ndhD [Jatropha curcas] gi|224979613|gb|ACN72740.1| ndhD [Jatropha curcas] Length = 500 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 164/500 (32%), Positives = 269/500 (53%), Gaps = 19/500 (3%) Query: 2 NLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGR 59 + P+L+I+ LP G + LF G + L I + + +V+S F Sbjct: 3 SFPWLTILVVLPISAGSLIFLFPHR---GNKVIRWYTLCICVLELLLMTYVFSYYFQLDD 59 Query: 60 SSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q+ E Y WI +F Y LG+DG S+ ++LT F+T L++ + I + R + Sbjct: 60 PLIQLTEDYKWIKFFDFYWRLGIDGFSLGPILLTGFITTLATLAA-RPINRDSRLFHFLM 118 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+ Sbjct: 119 LAMYSGQIGLFSSQDLLLFFIMWELELIPIYLLLSMWGGKKRLYSATKFILYTAGGSVFL 178 Query: 179 LFAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L + + + ++ A +P +++ + +I F +FA+K P+ P HTWLP+ H Sbjct: 179 LMGALGIALYGSNEPRFHFEISANQSYPAALEIFFYIGFLIAFAVKSPIIPLHTWLPDTH 238 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMG YG IR + P A F+P + + ++ IIYA+ S Q Sbjct: 239 GEAHYSTCMLLAGILLKMGAYGLIRINMGFLPHAHSIFSPWLIIVGVMQIIYAASTSPGQ 298 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 299 RNLKKRIAYSSVSHMGFIIIGICSISDMGLNGAILQIISHGFIGAALFFLAGTGYDRIRR 358 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV---AVLA 413 + GG+ MP+ + ++A++ LPG SGF E +V + + +L Sbjct: 359 VYLDEMGGMAPPMPKIFTTFSILSLASLALPGMSGFFSELIVFFGIITGQKYLLMSKILI 418 Query: 414 SF----GVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGI 467 +F G++L+ +Y L + R++ +G + VQ D RE + I + + GI Sbjct: 419 TFVMAVGMILTPIYLLSMLRQIFYGY-RLFNVQNSYFFDSGPRELFVSISILLPVIGIGI 477 Query: 468 YPVPIRDTFSVPLSSIIENY 487 YP + + +I+ NY Sbjct: 478 YPDFVFSLSIDKVEAILSNY 497 >gi|229007598|ref|ZP_04165193.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus mycoides Rock1-4] gi|228753736|gb|EEM03179.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus mycoides Rock1-4] Length = 473 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 143/405 (35%), Positives = 239/405 (59%), Gaps = 21/405 (5%) Query: 53 SVFDKGRSSFQMIEYYHWIDY-----------FCSYHLGVDGISILLVVLTTFLTPFCIL 101 S + G+S E WI + Y LG+DG S+++++LT L + Sbjct: 24 STYASGKSLTMFAEKVKWIQFGHFPGVDEKLFSIYYELGIDGFSLVMMILTALLATLAAI 83 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI 161 +++ SIQ+N + + + L LE ++G F + ++LLF++FFE +L PMF++IG WG Sbjct: 84 TAF-SIQKNIKGFYMLLLTLEIGMLGVFAAENLLLFFVFFEITLPPMFLLIGKWGKLNSE 142 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA---------MSKFPFSIQYWMW 212 AAY + +Y GS +L ++ + T++I DL + S+Q ++ Sbjct: 143 KAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIADLKDILTGVDTALLGDISSSLQLGLF 202 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 IA +FAIK+P+FP H W+ N HV+A A + AG++LK+G YG +RF LFP Q Sbjct: 203 IALMIAFAIKLPVFPLHRWMVNVHVEAHPAVVMLHAGVLLKIGAYGIVRFGKGLFPEQFQ 262 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 FA ++ L +I ++Y + ++++QTD +K++AYSSI+HMG V +G+ + +G++GA+FQ Sbjct: 263 DFAMLLAILGVINLLYGAFLAIIQTDFRKVLAYSSISHMGIVLMGLGALNAAGMKGALFQ 322 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 ++SHGL+++ LF +G+I R T DI GGL +P + ++ +MA++GLPG SGF Sbjct: 323 VVSHGLIAALLFCLLGMIEGRFGTSDITKLGGLAKQVPVLSGFLLAGSMASLGLPGMSGF 382 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSK 437 + EFL + +FQ +A + + G++L+A+Y L +V FG + Sbjct: 383 VSEFLAFLGLFQGKPMLAAIGALGIILTAVYVLRATLQVTFGKKE 427 >gi|5881746|dbj|BAA84437.1| NADH dehydrogenase ND4 [Arabidopsis thaliana] Length = 506 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 164/501 (32%), Positives = 280/501 (55%), Gaps = 21/501 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 9 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 67 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WID+F Y +G+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 68 IQLSEDYKWIDFFDFYWRMGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RFFHFLMLA 126 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 127 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 186 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 187 GVLGISLYGSNEPTLNLELLANKSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGE 246 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 247 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLLVVGTIQIIYAASTSPGQRN 306 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 307 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 366 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-------VAV 411 + GG+ ++P+ + + +MA++ LPG SGFI EF+V + + + Sbjct: 367 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFIAEFIVFFGIITSQKYFLISKIFIIF 426 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL-----RERCMVYPIAVLTVFFG 466 + + G++L+ +Y L + R++ +G K+ +K+ S RE + I + + G Sbjct: 427 VMAIGMILTPIYLLSMLRQMFYGY----KLINIKNFSFFDSGPRELFLSISILLPIIGIG 482 Query: 467 IYPVPIRDTFSVPLSSIIENY 487 IYP + S + SI+ NY Sbjct: 483 IYPDFVLSLASDKVESILSNY 503 >gi|239929555|ref|ZP_04686508.1| NADH dehydrogenase I chain M [Streptomyces ghanaensis ATCC 14672] gi|291437881|ref|ZP_06577271.1| NADH dehydrogenase I chain M [Streptomyces ghanaensis ATCC 14672] gi|291340776|gb|EFE67732.1| NADH dehydrogenase I chain M [Streptomyces ghanaensis ATCC 14672] Length = 524 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 160/440 (36%), Positives = 237/440 (53%), Gaps = 26/440 (5%) Query: 55 FDKGR-SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQEN 110 FD + S Q WI HLG DGIS+ L+VLT LT L S+ + Sbjct: 66 FDHDQPSKMQATTDISWIPALDVRIHLGTDGISLPLLVLTALLTFLSALHSYFKPPAGPS 125 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + ++ LVLES + F LD++LF++ FE LIPM+ +I WGG R AA+KF LY Sbjct: 126 PKAFVALLLVLESGTLATFAVLDLVLFFLAFETVLIPMYFLIARWGGEGRAEAAWKFILY 185 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS+ ML ++++ T ++ L + ++Q +A A+K PM+P Sbjct: 186 TLLGSVVMLLGLLLIGLGAGTFDMVALATDNGRSLTTTVQVTAVLAIGLGLAVKTPMWPL 245 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H+WLP+AH APT GSV LAG++LKMG YG +R LLP P + FAP + +++ IIY Sbjct: 246 HSWLPDAHTAAPTVGSVLLAGVLLKMGTYGFVRILLPAAPDGFRTFAPYLAAFAVVGIIY 305 Query: 289 ASLVSM------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 SL + + D+K+LIAYSS+ HMG+V +G+ + +GV GA+F ++HGL++ Sbjct: 306 GSLACLALARRGAKGDLKRLIAYSSVGHMGFVLLGVATMTPTGVNGALFANIAHGLITGL 365 Query: 343 LFFCVGVIYDRLHTRDIFAY-----GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 LFF VG + DR + D+ L PR ++ +A++GLPG +GF GE L Sbjct: 366 LFFLVGALKDRTGSTDLDTLAQETGAALYGKAPRLGGLLAFGAVASLGLPGLAGFWGEML 425 Query: 398 VIMSVFQNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 + F + T + +FG +L+A Y L + R+V G + E +L D+ Sbjct: 426 ALFGAFDPAEGLSRPAFLTFMAIGAFGTLLTAAYLLIVVRRVCMGAAPRE-APELTDVRG 484 Query: 450 RERCMVYPIAVLTVFFGIYP 469 E P+ VLTV G++P Sbjct: 485 HEFAAWTPLVVLTVVAGLWP 504 >gi|332826693|gb|EGJ99515.1| hypothetical protein HMPREF9455_04111 [Dysgonomonas gadei ATCC BAA-286] Length = 494 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 143/418 (34%), Positives = 242/418 (57%), Gaps = 14/418 (3%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+L+++LT + +SW ++ +++ + +L V G F+SLDM Sbjct: 79 YAIGVDGISVLMILLTAVIIFTGTFASW-NMNPLPKDFFMWLTLLSIGVYGFFISLDMFT 137 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK-----T 191 + F+E +LIPM+++IG+WG + Y+A K L GS F+ I+ + + T Sbjct: 138 MFFFYEIALIPMYLLIGLWGTGRKEYSAMKLTLMLMGGSAFLFVGILGIYFHSSITGDYT 197 Query: 192 SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 +I+++ A + P S+QYW + F F + +FPFHTW P+ H APTA S+ AG++ Sbjct: 198 FNILEIAANNSIPVSVQYWAFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVL 257 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 +K+GGYGC R + L P A+ + + L+ I++IY +L ++ QTD+K + AYSS++H Sbjct: 258 MKLGGYGCFRIAMRLMPEAADELSWIFIILTGISVIYGALGAIAQTDLKYINAYSSVSHC 317 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V I ++ + GA+ QMLSHGL+++ F +G+IY R HTRDI GGL+ MP Sbjct: 318 GLVLFAILMMNQTAMTGAVMQMLSHGLMTALFFALIGMIYGRTHTRDIRQMGGLMKIMPF 377 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN------TVAVLASFGVVLSALYSL 425 +V ++ +A++GLPG SGF+ E + + F++++ T+A ++S +V++A+Y L Sbjct: 378 LSVCYVIAGLASLGLPGLSGFVAEMTIFVGAFEHNDLFHRIFTIAAISS--IVVTAVYIL 435 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSI 483 + K+++G + +L D E+ + + G++P I D + L I Sbjct: 436 KVVGKILYGPVQDPHHLELTDAVWHEKIATVGLIICVAGMGLFPGWISDLITSSLGYI 493 >gi|55378238|ref|YP_136088.1| NADH dehydrogenase subunit 4 [Haloarcula marismortui ATCC 43049] gi|55230963|gb|AAV46382.1| NADH dehydrogenase subunit 4 [Haloarcula marismortui ATCC 43049] Length = 511 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 154/425 (36%), Positives = 243/425 (57%), Gaps = 20/425 (4%) Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 Q I + + SY++G+DGIS+ L+ LTT LT I+S+W I E ++ L +E Sbjct: 68 QQIPWITLGELEVSYYVGLDGISMPLLALTTVLTTLAIVSAWTPIDERQSQFYGLMLFME 127 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +IG F +LD L+++F+E LIPM+++IGVWGG R YAA KFF+YT S+ M + Sbjct: 128 VSLIGVFSALDFFLWFVFWEGVLIPMYLLIGVWGGPRRKYAAIKFFVYTNVASLVMFAGL 187 Query: 183 VVMCWEKKTSSIIDLYAM-------SKFP----FSIQYWMWIAFFCSFAIKIPMFPFHTW 231 + + +S+ L AM S P ++ +I F FA+K+P+FP HTW Sbjct: 188 FALVFSTDLTSL-SLPAMAEAFRTASGLPTIAGVNLMTISFILMFFGFAVKVPVFPLHTW 246 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHV+APT SV LAG++LKMG Y +RF + ++ A + + ++++IY ++ Sbjct: 247 LPDAHVEAPTPVSVMLAGVLLKMGTYALLRFNFTMLADTARQLAVPLAIIGVVSVIYGAM 306 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 +++ Q D+K+++AYSSI+ MGYV +G+ + G+ GA FQM++HGL+S +F CVGVIY Sbjct: 307 LALAQRDLKRIVAYSSISSMGYVILGLVAFTPYGMGGATFQMIAHGLISGLMFMCVGVIY 366 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA- 410 + HTR + GL MP + + MGLP +GF GE+ + F N+ T+ Sbjct: 367 NTTHTRMVGDMSGLADRMPWTVGIFVAAAFGYMGLPLMAGFAGEYFIFQGSF-NAPTLGG 425 Query: 411 ------VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 LA FG+V+ A Y LW ++ +FG E ++ + + + + +L + Sbjct: 426 AAPVLTSLAMFGIVIVAGYLLWAMQRTLFGGFNLETDYEVSPAAFHDVAPLAVLLLLVIA 485 Query: 465 FGIYP 469 G+ P Sbjct: 486 LGVAP 490 >gi|161622359|ref|YP_001586231.1| NADH dehydrogenase subunit 4 [Acorus americanus] gi|193806219|sp|A9LYF0|NU4C_ACOAM RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|160369902|gb|ABX38793.1| NADH-plastoquinone oxidoreductase subunit 4 [Acorus americanus] Length = 500 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 155/495 (31%), Positives = 264/495 (53%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P I F + G ++ + + + + + +F + F Q Sbjct: 5 PWLTIIVVFPISAGLSIFFLPHRGNKVVRWYTICICLLELLLMTYVFCYH-FQLNDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI+ F + G+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LDEDYEWINIFDFHWRPGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGLFSSRDLLLFFLMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + M ++ A +P S++ + F ++A+K+P+ P HTWLP+ H +A Sbjct: 183 LGMGLYGSNEPTLNFETSANQSYPVSLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLVLAGTLQIIYAASTSLGQVNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG+ IGI S +G+ GA+ Q+LSHG + +ALFF G DR+ + Sbjct: 303 KRIAYSSVSHMGFTIIGIGSITDTGLNGAILQLLSHGFLGAALFFLAGTSCDRIRLIYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGISIPMPKIFTMFSSFSMASLALPGMSGFVAEAVVFFGIITSQKFLFLPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +Y L + R++ +G D RE + I + + GIYP + Sbjct: 423 AIGMILTPIYLLSMLRQIFYGYKLFNMTNSYFMDSGPRELFVSICIFLPVIGIGIYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + +I+ NY Sbjct: 483 LSLSVDKVEAILSNY 497 >gi|154508650|ref|ZP_02044292.1| hypothetical protein ACTODO_01151 [Actinomyces odontolyticus ATCC 17982] gi|153798284|gb|EDN80704.1| hypothetical protein ACTODO_01151 [Actinomyces odontolyticus ATCC 17982] Length = 515 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 163/501 (32%), Positives = 280/501 (55%), Gaps = 22/501 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFD-KGR 59 N P+LS++ +P G ++ F L R + VAL +S + ++V SVFD Sbjct: 5 NFPWLSVLVAIPAAGAALLGFVPPLR--RAAGRVVALVVSLVELALGVYVAASVFDWSAP 62 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW-KSIQENFREYMIA 117 +S+Q+ E + WI ++ LGV + +++++L L P +++ W + + Y Sbjct: 63 ASYQVYESHLWIPQIGITWSLGVTALGLVMILLAIGLVPLVLIAGWDEDDAADCGAYPAL 122 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSE--RIYAAYKFFLYTFFG 174 L L++ ++ F + D+ +FY FEA L+P++++IG +G G E R AA KF LY+ FG Sbjct: 123 VLALQAFMVVIFAAYDLTVFYFAFEAMLVPLYLMIGRYGVGDEAARHKAAMKFLLYSLFG 182 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYA----------MSKFPFSIQYWMWIAFFCSFAIKIP 224 + ML I+ + W K + ++ D+ + P +IQ +++ F +FAIK P Sbjct: 183 GLVMLGGILYL-WAKGSQALQDVSTFFRIDTLAQILPSAPLAIQMVVFVTFMVAFAIKAP 241 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 M P HTWLP+ A SV L G++ K+G +G I L L P A+ V+ L++I Sbjct: 242 MVPVHTWLPDTAAVARPGTSVLLVGVLDKIGTFGMIALCLQLTPGAAVSAKWVMCVLAVI 301 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +I++ L + Q DI +L++Y+S++H G++ +GIF G + + GAMF M++HG+ +A+F Sbjct: 302 SILWGGLAANGQNDIMRLVSYTSVSHFGFMVLGIFIGSQIALVGAMFYMVAHGVSIAAMF 361 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G + R T+D+ Y G+ P A + +V +A++ LPG SGF+ E+LV+M + Sbjct: 362 LLSGWLSRRGGTQDMREYVGMQRVTPVLAGLWLVSGLASIALPGLSGFVPEYLVLMGTWS 421 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 S +A+ A GVV++ALY L Y++V G K ++L DL+ RER ++ P+ + Sbjct: 422 VSGPLAIFAVLGVVIAALYVLMPYQRVFTGAPGKGK-EELADLATRERGVMVPLVAAMLI 480 Query: 465 FGIYPVPIRDTFSVPLSSIIE 485 GI+ P+ + P++S ++ Sbjct: 481 LGIWSAPLVSALT-PVASDLD 500 >gi|189468084|ref|ZP_03016869.1| hypothetical protein BACINT_04478 [Bacteroides intestinalis DSM 17393] gi|189436348|gb|EDV05333.1| hypothetical protein BACINT_04478 [Bacteroides intestinalis DSM 17393] Length = 492 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 141/404 (34%), Positives = 230/404 (56%), Gaps = 7/404 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L+ + +SW+ +Q +EY + F +L V G F+S D+ Sbjct: 77 YSVGVDGISVAMLLLSAIIVFTGTFASWR-LQPLTKEYFLWFTLLSLGVFGFFISTDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 ++F+E +LIPM+++IGVWG + Y+A K L GS F+L I+ + + +S + Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYSAMKLTLMLMGGSAFLLIGILGIYFGSGATSMNL 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ + P Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 LEIAQLRNIPIEQQRIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 255 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A+Q + L+ I+++Y + + VQTD+K + AYSS++H G V Sbjct: 256 GGYGCFRIAMYLMPEAAQELGWIFLILTGISVVYGAFSACVQTDLKYINAYSSVSHCGLV 315 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP AV Sbjct: 316 LFAILMMNQTACTGAVLQMLSHGLMTALFFALIGMIYGRTHTRDVRELSGLMKIMPFLAV 375 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGF+ E + FQ+ + T ++A +V++A+Y L L K Sbjct: 376 CYVIAGLANLGLPGLSGFVAEMTIFNGAFQHVDVFHRTWTIIACTSIVITAVYILRLVGK 435 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 +++G + L D + ER V + V G+ P+ I + Sbjct: 436 ILYGTCTNKHHLTLTDATWDERTAVIILIVCVAGLGLAPLWISN 479 >gi|197107592|gb|ACH42376.1| NADH dehydrogenase subunit 4 [Pelvetia canaliculata] Length = 246 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 127/243 (52%), Positives = 175/243 (72%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 V+LTT + P C+L+SW + + + Y+I+FL +E +++ F SLD+L FYIFFEA LIPM Sbjct: 4 VLLTTLIFPLCLLASWTFNKGDLKTYLISFLSMELVLLLVFTSLDLLFFYIFFEAVLIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG++G +R I AAY FFLYT GS+FML +V + ++S + ++ KF Sbjct: 64 FLVIGIYGSRQRKIRAAYMFFLYTLLGSLFMLVGVVYIYLSVGSTSY-EALSVIKFSSYN 122 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 123 QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 182 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P AS YF P IF LS++ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G G+E Sbjct: 183 PEASIYFTPFIFSLSVLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGIE 242 Query: 328 GAM 330 A+ Sbjct: 243 AAI 245 >gi|294827750|ref|NP_711066.2| NADH dehydrogenase (ubiquinone) chain M [Leptospira interrogans serovar Lai str. 56601] gi|293385593|gb|AAN48084.2| NADH dehydrogenase (ubiquinone) chain M [Leptospira interrogans serovar Lai str. 56601] Length = 413 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 223/354 (62%), Gaps = 11/354 (3%) Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA--MSKFPF 205 M +++G+WG +R+ AA K+ +++F GS+ ML I+++ ++ T I +L + + P Sbjct: 1 MVLMVGIWGEDQRVKAAIKYLIFSFTGSVLMLAGILILYFKTGTIVIEELSTGLLPEIPK 60 Query: 206 SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 +I+ +M+ AF +FAIK+P+FP HTW+P+ H QAPT GSV L+GI+LK+G YG IR +P Sbjct: 61 NIRLFMFFAFVLAFAIKVPLFPLHTWMPDVHSQAPTVGSVDLSGILLKIGLYGFIRLAIP 120 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 LFP + ++ L + IIY ++++M Q + K+++A+SS++HM + +GI S + G Sbjct: 121 LFPEEMLEYRELLGALCIAGIIYGAVIAMAQENSKRVVAFSSLSHMSFCMLGILSFTEEG 180 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 + G M QML+HG + LFF +G++++R+ DI GGL +P ++V + +++G Sbjct: 181 MAGGMLQMLNHGFTAGMLFFMLGMLHERIGNNDISKAGGLSKLLPVFSVFFAIAIFSSLG 240 Query: 386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 +PGT+ FIGEFL+I+ +++ LA+ GVV +A Y L ++++FG + + + Sbjct: 241 VPGTNSFIGEFLIILGSIKSNIVYGALAATGVVFAAGYLLLFAKRMIFG-EPTKNLIEHN 299 Query: 446 DLSLRERCMVYPIAVLTVFFGIYPVP----IRDTFSVPLSS----IIENYTLKT 491 DL+L+E ++ P ++ + GIYP P + + V L+S +IE+ + KT Sbjct: 300 DLNLKEWVILVPTVIMIFWIGIYPKPFLKVLEPSVKVALNSASAKVIEDRSKKT 353 >gi|313199671|ref|YP_004021287.1| NADH-plastoquinone oxidoreductase subunit 4 [Isoetes flaccida] gi|291575400|gb|ADE18113.1| NADH-plastoquinone oxidoreductase subunit 4 [Isoetes flaccida] Length = 501 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 154/479 (32%), Positives = 255/479 (53%), Gaps = 13/479 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 N P+L+I+ LP I Y G ++ + +S I +F + F+ Sbjct: 3 NYPWLTIIVPLPIPAGSSIPLFPYRGNKIVRWYTSGICLSEFLLITYIFCYH-FNFNNPF 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y+WI+ + LG+DG+SI L+ T F+T ++W + + R + + L Sbjct: 62 IQLKEDYNWINPIDFHWRLGIDGLSIGLISSTGFVTTLATSAAWP-VTRSPRLFHFSMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + +G+ D L + +E LIP+ + + +WGG R+YAA KF LYT GSIF+ Sbjct: 121 MYGGQVGSSAPQDTSLSFFMWEPELIPVHLPLSMWGGKRRLYAATKFILYTAGGSIFLPI 180 Query: 181 AIVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + M +D A +P ++ ++++F ++A+K+P+FP HTWLP+ H + Sbjct: 181 GALTMSLYGSDEPTLDSQNLANKSYPIVLEIVLYLSFPVAYAVKLPIFPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + AGI+LKMGGYG IR + L P A F+P + + I I+YA+ + + Q + Sbjct: 241 AHYSTCMLPAGILLKMGGYGPIRINMELLPHAHSIFSPWLVIVGAIQIVYAAPIPLSQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+ IAYSS++HMG+V IGI G+ GA+ QM+ HGL+ +ALF G YDR+ T Sbjct: 301 LKRRIAYSSVSHMGFVPIGIGFVTDIGLNGAIPQMIPHGLIGAALFSSAGTSYDRIRTLF 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 I GG+ +MP+ + F +A++ LPG SGFI E +V + + + N + V Sbjct: 361 IDRMGGIAVSMPKTFTMFSSFPVASLALPGMSGFISELMVSLGMVGSRNYSFTSKIIITV 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVS-KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +YSL + R++ +G + + D RE ++ + V G YP Sbjct: 421 IEAIGIILTPIYSLPMLRQMFYGYKVSNAPISHIMDSGPREILILIRFLLPIVGIGFYP 479 >gi|197107582|gb|ACH42371.1| NADH dehydrogenase subunit 4 [Ectocarpus sp. FRA0524] Length = 246 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 126/243 (51%), Positives = 175/243 (72%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 V+LTT + P C+L+SW + + + Y+++FL +E +++ F +LD+L FYIFFEA LIPM Sbjct: 4 VILTTLIFPLCLLASWSFDKGDVKTYLVSFLSMELVLLLVFTNLDLLFFYIFFEAVLIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG++G +R I AAY FFLYT FGS+FML ++ + +++ L +S F Sbjct: 64 FLVIGIYGSRQRKIRAAYMFFLYTLFGSLFMLIGVIYIYLFAGSTNYESLATVS-FSSYD 122 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 123 QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 182 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P AS YF P +F LSL+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G GVE Sbjct: 183 PEASVYFTPFVFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGVE 242 Query: 328 GAM 330 A+ Sbjct: 243 AAI 245 >gi|149390322|ref|YP_001294153.1| NADH-plastoquinone oxidoreductase subunit 4 [Chloranthus spicatus] gi|193806223|sp|A6MMH7|NU4C_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|146744242|gb|ABQ43314.1| NADH-plastoquinone oxidoreductase subunit 4 [Chloranthus spicatus] Length = 500 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 160/498 (32%), Positives = 267/498 (53%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ LP I F + G ++ + + + + F + F Sbjct: 3 SFPWLTIIVVLPIFAGSSIFFLPHRGNKIVRWYTICICLLELLLTTYTFCYH-FQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI+ F + LG+DG+SI ++LT F+T L++ + + + R + L Sbjct: 62 IQLEEDYKWINIFDFHWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 I M + + A +P +++ + F ++A+K P+ P HTWLP+ H + Sbjct: 181 GIPGMGLYGSNQPPFNFETSANQSYPVALEILFYFGFLIAYAVKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I +IYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGTIQVIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HM ++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMAFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLIY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 361 LDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAESIVFFGIITSPKYFFMPKILITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +YSL + R++ +G K V D RE + I + + GIYP Sbjct: 421 VMAIGMILTPIYSLSMSRQMFYGY-KLFNVPNSYFVDSGPRELFVSICIFLPVIGIGIYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 480 DFVLSLSVDKVEAILSNY 497 >gi|325067551|ref|ZP_08126224.1| proton-translocating NADH-quinone oxidoreductase, chain M [Actinomyces oris K20] Length = 454 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 157/450 (34%), Positives = 252/450 (56%), Gaps = 14/450 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW--SVFDKGR 59 +LP L+++ P G ++ L R A+G+ + +L +W S FD + Sbjct: 7 SLPVLTVMAVTPLAGALLLWLVPPL----RRLHARAVGLVFSLAVLALGLWALSAFDLAQ 62 Query: 60 -SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 SS Q+ + + WI S+ LGV+G+ + +V+L F+TP +L+SW + + + Sbjct: 63 ASSVQLTDTHSWIPAIGASWALGVNGLGLSMVLLGAFVTPLVLLASWGEVPADRQGLFTG 122 Query: 118 F-LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L LE V+ F + D+LLFY+ FEA LIP++ +IG +GG R AA KF LY+ G + Sbjct: 123 LVLTLEFFVVVIFSARDLLLFYLCFEAMLIPVYFLIGCFGGQNRQRAALKFLLYSLAGGL 182 Query: 177 FMLFAIVVMCWEKKTSSI----IDLYAMS-KFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 ML ++ + + + ID A + S +W+++ FF +FAIK P+ P HTW Sbjct: 183 IMLIGVIAVHLHSAKNGVPSFLIDSVAANLHVSTSAGHWIFLTFFIAFAIKAPLVPVHTW 242 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+ QA SV L GI+ K+G +G +LP+FP AS++ APVI L++++IIY L Sbjct: 243 LPDTAEQATPGTSVLLIGILDKIGTFGMFTLVLPIFPEASRWAAPVILVLAVVSIIYGGL 302 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ Q ++ +LI+Y+S++H G++ +GIF G + GAM M++HGL + L+ G + Sbjct: 303 AAIAQDNLYRLISYTSVSHFGFMVLGIFIGNQVAANGAMVYMVAHGLSIAGLYLVTGFMA 362 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 R T I GG+ MP A +V +A++ LPG SGF+ E++V+ F S + Sbjct: 363 RRTGTVAISELGGIARVMPLVAGTFLVSGLASIALPGLSGFVPEWMVLTGTFSVSLALGG 422 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKV 441 A GVV++A+Y L Y++V G E+V Sbjct: 423 AAVVGVVIAAVYMLLPYQRVFTGAPAPERV 452 >gi|148239108|ref|YP_001224495.1| NAD(P)H-quinone oxidoreductase subunit 4 [Synechococcus sp. WH 7803] gi|147847647|emb|CAK23198.1| NAD(P)H-quinone oxidoreductase chain 4 [Synechococcus sp. WH 7803] Length = 523 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/424 (34%), Positives = 236/424 (55%), Gaps = 11/424 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD S Q++E W+ + L DG+S LVVL+ +T +++SW ++ R Sbjct: 69 FDPLSSELQLVERVSWLPSIGLEWSLAADGLSAPLVVLSGLVTLLSVVASW-NVTHKSRL 127 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV S FLS D LLF++ +E L+P++++I +WGG R YAA KF LYT Sbjct: 128 YFGLLLVQASAQGLVFLSQDFLLFFLAWELELVPVYLLIAIWGGQNRQYAATKFILYTAL 187 Query: 174 GSIFMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 S+ +L + + + + ++ ++ A S ++ F F +K+PMFP HTWL Sbjct: 188 ASLLILISGLALALSGDSFTLNLNELAQRSPGGSFGLLCYLGFLVGFGVKLPMFPLHTWL 247 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH +A S+ LAG++LKMGGY +RF + + P A AP + L ++ I+Y +L Sbjct: 248 PDAHGEANAPVSMLLAGVLLKMGGYALLRFNVQMLPDAHLVMAPALIVLGIVNIVYGALN 307 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q ++K+ IA SS++HMG+V +GI + + GAM QM+SHGL+++A+FF G Y+ Sbjct: 308 AFAQDNVKRRIACSSVSHMGFVLLGIGAVDALSISGAMLQMISHGLIAAAMFFVTGCFYE 367 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----- 407 R T I GGL +P + ++A++ LPG SGFI E V + + + Sbjct: 368 RTKTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGFISEITVFLGITSQESFTTLF 427 Query: 408 --TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 T VLA+ G+VL+ +Y L + R+V FG + + ++D+ RE + + V T+ Sbjct: 428 RVTTIVLAAIGLVLTPIYLLSMCRRVFFG-PRIPALAFVEDMRPRELVIGLTLLVPTLVI 486 Query: 466 GIYP 469 GI+P Sbjct: 487 GIWP 490 >gi|28202224|ref|NP_777464.1| NADH dehydrogenase subunit 4 [Anthoceros formosae] gi|27808096|dbj|BAC55501.1| NADH dehydrogenase ND4 subunit [Anthoceros formosae] Length = 384 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 226/387 (58%), Gaps = 19/387 (4%) Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L + S +G F S D+LLF+ +E LIP+++++ +WGG R+YAA KF LYT S+F+ Sbjct: 2 LAMYSGQVGLFASQDILLFFFMWELELIPVYLLLSMWGGKRRLYAATKFILYTAGSSVFL 61 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 L + M +D ++ +P ++ +++ FF ++A+K+PM P HTWLP+ H Sbjct: 62 LMGALTMGLYGSDGPTLDFENLANRSYPIGLEIILYLGFFIAYAVKLPMVPLHTWLPDTH 121 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 +A + + LAGI+LKMGGYG IR + L A FAP + + I I+Y++L S+ Q Sbjct: 122 GEAHYSTCMLLAGILLKMGGYGLIRINMELLSHAHSIFAPWLVVIGAIQIVYSALTSLSQ 181 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 ++K+ IAYSS++HMG+V IGI S GV GA+ QM+SHGL+ +ALFF GV YDR T Sbjct: 182 LNLKRRIAYSSVSHMGFVLIGIGSTTDIGVNGAILQMISHGLIGAALFFSAGVTYDRTRT 241 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TV 409 + GG+ ++P+ + F+MA++ LPG SGF+ E ++ + + + N + Sbjct: 242 LFLNQMGGIATSIPKIFTMFSSFSMASLALPGLSGFVAELMIFLGIVSSQNFSFLFKVVI 301 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRE----RCMVYPIAVLTVF 464 ++A+ G++L+ +Y L + R++ +G + + + D RE C+ +PI + Sbjct: 302 IIVAATGIILTPIYLLSMLRQMFYGYRIIKNLTSYVTDAGPREIFIFICLFFPI----IG 357 Query: 465 FGIYPVPIRDTFSVPLSSIIE-NYTLK 490 G YP + + + SII N++ K Sbjct: 358 IGFYPKLVLSLSNSKVESIISGNFSSK 384 >gi|260885205|ref|ZP_05734521.2| NADH dehydrogenase I, M subunit [Prevotella tannerae ATCC 51259] gi|260853167|gb|EEX73036.1| NADH dehydrogenase I, M subunit [Prevotella tannerae ATCC 51259] Length = 498 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 168/505 (33%), Positives = 276/505 (54%), Gaps = 34/505 (6%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS- 61 + FLS+ +P L +L + +L G+++ V + S++ + +F K R++ Sbjct: 1 MNFLSLFVLIPLL----MLPALWLSKGQKAIRTVMVVGSSLLLALAALTTILFLKERAAG 56 Query: 62 --FQMIEYYHWIDYFCSYHL----GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 QM+ + +D+F S H+ GVDGIS+ +++L+ + SW + +EY Sbjct: 57 ADAQML-FTASVDWFTSLHIKYSVGVDGISVAMLLLSAVIVFTGAFVSW----DMNKEYF 111 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 + F +L V G F+++DM ++F+E +LIPM+++IGVWG + YAA K L GS Sbjct: 112 LWFTLLSIGVFGFFITVDMFAMFMFYEIALIPMYLLIGVWGTGPKEYAAMKLTLMLMGGS 171 Query: 176 IFMLFAI--VVMCWEKKTSSIIDLYAMS----KFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 F++ I + +T +I ++ + P + QY + F F + +FPFH Sbjct: 172 AFLMCGIFGIFFGAGGETMNITEIANHTGGAHAIPLAQQYVWFPLTFVGFGVLGALFPFH 231 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TW P+ H APTA S+ AG+++K+GGYGC R + L P AS + L+ I+++Y Sbjct: 232 TWSPDGHASAPTAVSMLHAGVLMKLGGYGCFRIAMYLMPEASHELGWIFLVLTGISVVYG 291 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 + + VQTD+K + AYSS++H G V G+ + V GA+ QMLSHGL ++ F +G+ Sbjct: 292 AFSACVQTDLKYINAYSSVSHCGLVLFGLLMMDQVAVTGAVLQMLSHGLTTALFFALIGM 351 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-- 407 IY R HTRDI GL+ MP AV +V +AN+GLPG SGF+ E + + F N++ Sbjct: 352 IYGRTHTRDIREMNGLMRIMPFLAVCYVVAGLANLGLPGFSGFVAEMTIFVGSFNNADIF 411 Query: 408 --TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER----CMVYPIAVL 461 + + A +V++A+Y L L K+++GV K + +L D + ER C++ IA L Sbjct: 412 HRVLTIAACTSIVITAVYILRLVGKILYGVCKNPEHLKLSDANPIERFAVICLIAAIAAL 471 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIEN 486 G+ P + D + +S I+ + Sbjct: 472 ----GMAPGWVSDMINGGVSPIVNH 492 >gi|219674004|ref|YP_002456488.1| NADH-plastoquinone oxidoreductase subunit 4 [Trifolium subterraneum] gi|193788973|gb|ACF20569.1| NADH-plastoquinone oxidoreductase subunit 4 [Trifolium subterraneum] Length = 498 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 162/479 (33%), Positives = 262/479 (54%), Gaps = 17/479 (3%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+IV P G F+ LF G + ++ I I+ + + + + F Sbjct: 6 PWLTIVVVFPIAAGSFIFLFPHR---GNKVIRWYSICICLIDLLLTTYAFCYHFRLDDPL 62 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI +F Y LG+DG+SI ++LT F+T L++ + + +R + L Sbjct: 63 IQLTENYKWIHFFDFYWRLGIDGLSIGPILLTGFITTLATLAA-QPVTREYRLFYFLMLA 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 122 MYSGQIGPFSSRDILLFFIMWELELIPVYLLLSIWGGKKRLYSATKFILYTAGASIFLLM 181 Query: 181 AIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 I+ + ++ ++ +P +++ + AF +FA+K P+ PFHTWLP+ H + Sbjct: 182 GILGIGLYGSNEPTLNFETLTNQSYPVALEIIFYTAFLLAFAVKSPIIPFHTWLPDTHGE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + F A F P + L I IIYA+ S Q + Sbjct: 242 AHYSTCMLLAGILLKMGAYGLVRINMEFFSHAHSIFCPWLMILGSIQIIYAASTSFGQRN 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDRL Sbjct: 302 LKKRIAYSSVSHMGFIIIGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLY 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---TVAVLASF 415 + GG+ MP+ + + +MA++ LPG SGF+ E +V + + + +L +F Sbjct: 362 LDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFWGIITSQKYLFMMKILMTF 421 Query: 416 ----GVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 G++L+ +Y L + R++ +G D RE + I + + GIYP Sbjct: 422 GTAIGMILTPIYLLSILRQMFYGYKFFNTPNSYFFDSGPRELFISISILIPVIGIGIYP 480 >gi|303237619|ref|ZP_07324179.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella disiens FB035-09AN] gi|302482071|gb|EFL45106.1| proton-translocating NADH-quinone oxidoreductase, chain M [Prevotella disiens FB035-09AN] Length = 503 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 141/401 (35%), Positives = 237/401 (59%), Gaps = 7/401 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++ +GVDGIS+++++L+ + +SW+ ++ +EY + F++L S V G F+S DM Sbjct: 77 AFAVGVDGISVVMILLSAIIVFTGTFASWQ-LEPMKKEYFLWFVLLSSGVFGFFISTDMF 135 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + Y+A K L GS ++F + + + T Sbjct: 136 TMFMFYEVALIPMYLLIGVWGTGAKEYSAMKLTLMLMGGSGLLIFGFLGIYYFSGASTMD 195 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 +I+L M +Q + F F I +FPFHTW P+ H APTA S+ AG+++K Sbjct: 196 VIELAKMHAMSKEVQNIFFPFVFVGFGILGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 255 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC+R + + P A + +APV L+ I+++Y +L + VQTD+K + AYSS++H G Sbjct: 256 LGGYGCLRIAMFIMPDALEMWAPVFLVLTTISVVYGALSACVQTDLKYINAYSSVSHCGM 315 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F C+G+IY R TRD+ GGL+ +P A Sbjct: 316 VLFALVMTTQTAITGAILQMLSHGLMTALFFACIGMIYHRAGTRDVRYLGGLMKVIPFLA 375 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSALYSLWLYR 429 V +V +AN+GLPG SGF+ E + + F+N+ T ++A +V++A+Y L + Sbjct: 376 VSYVVAGLANLGLPGFSGFVAEMTIFVGSFENAGTFHRVCTLIACTSIVVTAVYILRVVG 435 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 K++F +K +L D + ER + + G+ P+ Sbjct: 436 KILFQAIPNKKFYELHDATWDERFAIAGLIFCVAGLGLAPL 476 >gi|197131438|gb|ACH47237.1| NADH-plastoquinone oxidoreductase subunit 4 [Geranium carolinianum] Length = 515 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 155/478 (32%), Positives = 267/478 (55%), Gaps = 15/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ P +I F + G ++ L I ++ + + + +S F Sbjct: 16 PWLTIIVIFPISAGSLIFFFPHRGNKVTRWY--TLCICSLELLLTAYAFSYHFQLDDPLI 73 Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI +F Y LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 74 QLVENYKWIHFFQFYWRLGIDGLSLGPILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 132 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 133 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSLWGGKKRLYSATKFVLYTAGSSLFLLIG 192 Query: 182 IVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + + + ++ A +P +++ +I F +FA+K+P+ P HTWLP+ H +A Sbjct: 193 VLSIGLFGSNEPTFHFEISAHQSYPAALEIIFYIGFLIAFAVKLPIIPLHTWLPDTHGEA 252 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + P A F+P + + I I+YA+ S+ Q ++ Sbjct: 253 HYSTCMLLAGILLKMGAYGLVRINVEFLPHAHSMFSPYLITIGAIQIVYAASTSLGQRNL 312 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + ++LFF G YDR+ Sbjct: 313 KKRIAYSSVSHMGFIIIGISSITDTGLNGAILQIISHGFIGASLFFLAGTSYDRIRLVSF 372 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV---AVLASF- 415 GG+ +P+ + + +MA++ LPG SGF+ E +V + + + +L +F Sbjct: 373 HEMGGMAVAIPKVFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKLLLMPKILITFV 432 Query: 416 ---GVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 433 MAIGMILTPIYSLSMLRQMFYGYRLLNAPTPPFFDSGPRELFVSISILLPVIGIGIYP 490 >gi|154362194|ref|YP_001123689.2| NADH dehydrogenase subunit 4 [Lepidium virginicum] Length = 501 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 162/498 (32%), Positives = 278/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 4 DFPWLTIIVIFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 62 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++F Y +GVDG+SI ++LT F+T L+++ +++ R + L Sbjct: 63 IQLSEGYKWINFFDFYWRMGVDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLMLA 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 122 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGSSIFLLI 181 Query: 181 AIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + + + ++L A +P +++ +I F +FA+K+P+ P HTWLP+ H + Sbjct: 182 GVLGLSLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKLPIIPLHTWLPDTHGE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 242 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLLVVGTIQIIYAASTSPGQRN 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 302 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 362 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 422 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 480 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 481 DFVLSLASDKVESILSNY 498 >gi|197131436|gb|ACH47236.1| NADH-plastoquinone oxidoreductase subunit 4 [Erodium texanum] Length = 510 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 145/418 (34%), Positives = 244/418 (58%), Gaps = 12/418 (2%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++++Y WI +F Y LG+DG+S+ V+LT F+T L++W + N R + L + Sbjct: 69 QLVDHYKWIPFFEFYWRLGIDGLSLGPVLLTGFITTLATLAAWP-VTRNPRLFYFLMLAM 127 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP++ ++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 128 YSGQIGSFSSRDLLLFFIMWELELIPVYFLLSLWGGKKRLYSATKFLLYTAGSSLFLLIG 187 Query: 182 IVVMCWEKKTSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ ++ A +P +++ +I F +FA+K P+ PFHTWLP+ H +A Sbjct: 188 VLGIGLFGSSAPTFHFEISAHQSYPAALEIIFYIGFLIAFAVKSPIIPFHTWLPDTHGEA 247 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + P A F+P + + I I+YA+ S+ Q ++ Sbjct: 248 HYSTCMLLAGILLKMGAYGLVRINMEFLPHAHSIFSPYLITIGAIQIVYAASTSLGQRNL 307 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 308 KKRIAYSSVSHMGFIIIGISSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLLSF 367 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV-------L 412 GG+ +P+ + + +MA++ LPG SGF+ E +V + + + + + + Sbjct: 368 DKMGGMAVAIPKVFTMFSILSMASLALPGMSGFVAELIVFLGIITSPKLLLIPRILIPFV 427 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G L D RE + I + + GIYP Sbjct: 428 MAIGMILTPIYSLSMLRQMFYGYRLLNVPNPPLFDSGARELFVSVSILLPVIAVGIYP 485 >gi|309322127|ref|YP_003933943.1| NADH-plastoquinone oxidoreductase subunit 4 [Erodium texanum] gi|300069220|gb|ADJ66342.1| NADH-plastoquinone oxidoreductase subunit 4 [Erodium texanum] Length = 510 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 145/418 (34%), Positives = 244/418 (58%), Gaps = 12/418 (2%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++++Y WI +F Y LG+DG+S+ V+LT F+T L++W + N R + L + Sbjct: 69 QLVDHYKWIPFFEFYWRLGIDGLSLGPVLLTGFITTLATLAAWP-VTRNPRLFYFLMLAM 127 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP++ ++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 128 YSGQIGSFSSRDLLLFFIMWELELIPVYFLLSLWGGKKRLYSATKFLLYTAGSSLFLLIG 187 Query: 182 IVVMCWEKKTSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ ++ A +P +++ +I F +FA+K P+ PFHTWLP+ H +A Sbjct: 188 VLGIGLFGSSAPTFHFEISAHQSYPAALEIIFYIGFLIAFAVKSPIIPFHTWLPDTHGEA 247 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + P A F+P + + I I+YA+ S+ Q ++ Sbjct: 248 HYSTCMLLAGILLKMGAYGLVRINMEFLPHAHSIFSPYLITIGAIQIVYAASTSLGQRNL 307 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 308 KKRIAYSSVSHMGFIIIGISSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLLSF 367 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV-------L 412 GG+ +P+ + + +MA++ LPG SGF+ E +V + + + + + + Sbjct: 368 DKMGGMAVAIPKVFTMFSILSMASLALPGMSGFVAELIVFLGIITSPKLLLIPRILIPFV 427 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G L D RE + I + + GIYP Sbjct: 428 MAIGMILTPIYSLSMLRQMFYGYRLLNVPNPPLFDSGARELFVSVSILLPVIAVGIYP 485 >gi|193806297|sp|A4QLF9|NU4C_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 162/498 (32%), Positives = 278/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 3 DFPWLTIIVIFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 61 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++F Y +GVDG+SI ++LT F+T L+++ +++ R + L Sbjct: 62 IQLSEGYKWINFFDFYWRMGVDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGSSIFLLI 180 Query: 181 AIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + + + ++L A +P +++ +I F +FA+K+P+ P HTWLP+ H + Sbjct: 181 GVLGLSLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKLPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLLVVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 361 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 421 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 480 DFVLSLASDKVESILSNY 497 >gi|156573636|gb|ABU85152.1| NADH-plastoquinone oxidoreductase subunit 4 [Acorus americanus] Length = 500 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 155/495 (31%), Positives = 263/495 (53%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P I F + G ++ + + + + + +F + F Q Sbjct: 5 PWLTIIVVFPISAGLSIFFLPHRGNKVVRWYTICICLLELLLMTYVFCYH-FQLNDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI+ F + G+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LDEDYEWINIFDFHWRPGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGLFSSRDLLLFFLMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 M ++ A +P S++ + F ++A+K+P+ P HTWLP+ H +A Sbjct: 183 PGMGLYGSNEPTLNFETSANQSYPVSLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLVLAGTLQIIYAASTSLGQVNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG+ IGI S +G+ GA+ Q+LSHG + +ALFF G DR+ + Sbjct: 303 KRIAYSSVSHMGFTIIGIGSITDTGLNGAILQLLSHGFLGAALFFLAGTSCDRIRLIYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGISIPMPKIFTMFSSFSMASLALPGMSGFVAEAVVFFGIITSQKFLFLPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +Y L + R++ +G D RE + I + + GIYP + Sbjct: 423 AIGMILTPIYLLSMLRQIFYGYKLFNMTNSYFMDSGPRELFVSICIFLPVIGIGIYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + +I+ NY Sbjct: 483 LSLSVDKVEAILSNY 497 >gi|134286893|dbj|BAF50514.1| NADH dehydrogenase ND4 [Lepidium virginicum] Length = 506 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 162/498 (32%), Positives = 278/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 9 DFPWLTIIVIFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 67 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++F Y +GVDG+SI ++LT F+T L+++ +++ R + L Sbjct: 68 IQLSEGYKWINFFDFYWRMGVDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLMLA 126 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 127 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGSSIFLLI 186 Query: 181 AIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + + + ++L A +P +++ +I F +FA+K+P+ P HTWLP+ H + Sbjct: 187 GVLGLSLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKLPIIPLHTWLPDTHGE 246 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 247 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLLVVGTIQIIYAASTSPGQRN 306 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 307 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 366 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 367 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 426 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 427 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 485 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 486 DFVLSLASDKVESILSNY 503 >gi|75755709|ref|YP_319813.1| NADH dehydrogenase subunit 4 [Acorus calamus] gi|122217396|sp|Q3V4Y4|NU4C_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|74381759|emb|CAI53844.1| ndhD [Acorus calamus] Length = 500 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 155/495 (31%), Positives = 263/495 (53%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ P I F + G ++ + + + + + +F + F Q Sbjct: 5 PWLTIIVVFPISAGLSIFFLPHRGNKVVRWYTICICLLELLLMTYVFCYH-FQLNDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI+ F + G+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LDEDYEWINIFDFHWRPGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGLFSSRDLLLFFLMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 M ++ A +P S++ + F ++A+K+P+ P HTWLP+ H +A Sbjct: 183 PGMGLYGSNEPTLNFETSANQSYPVSLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLVLAGTLQIIYAASTSLGQVNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG+ IGI S +G+ GA+ Q+LSHG + +ALFF G DR+ + Sbjct: 303 KRIAYSSVSHMGFTIIGIGSITDTGLNGAILQLLSHGFLGAALFFLAGTSCDRIRLIYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGISIPMPKIFTMFSSFSMASLALPGMSGFVAEAVVFFGIITSQKFLFLPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +Y L + R++ +G D RE + I + + GIYP + Sbjct: 423 AIGMILTPIYLLSMLRQIFYGYKLFNMTNSYFMDSGPRELFVSICIFLPVIGIGIYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + +I+ NY Sbjct: 483 LSLSVDKVEAILSNY 497 >gi|254425085|ref|ZP_05038803.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Synechococcus sp. PCC 7335] gi|196192574|gb|EDX87538.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Synechococcus sp. PCC 7335] Length = 526 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 159/459 (34%), Positives = 259/459 (56%), Gaps = 16/459 (3%) Query: 43 INFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCIL 101 +N + + + + FD S FQ +E WI+ +Y LGVDGI++ L+V+ + L C + Sbjct: 32 VNLVMTTALVAQFDITDSGFQFLEKIAWIEPLGLTYSLGVDGIALPLIVINSLL---CFV 88 Query: 102 SSWKSIQ-ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER 160 S + S R Y L++ S V GAFL+ ++LLF++F+E LIP++++I +WGG R Sbjct: 89 SVYISHGVRRPRLYYSLLLLITSAVAGAFLAQNLLLFFLFYELELIPLYLLIAIWGGERR 148 Query: 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA-FFCSF 219 YAA KF +YT F I +L A + + T S ++++ +Q + + F Sbjct: 149 GYAATKFLIYTAFSGILILGAFLGLVLLSGTGSFDYDPSLAQTLSVVQQTVLMGVLLIGF 208 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 IKIP+FPFHTWLP+AHV+A T SV LAG++LK+G YG +RF + LFP A +P++ Sbjct: 209 GIKIPLFPFHTWLPDAHVEASTPLSVLLAGVLLKLGTYGMLRFCVGLFPQAWMELSPLLA 268 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 + ++++++Y SL ++ QTD+KK++AYSS+ HMGY+ + + + G + QM+SHGL+ Sbjct: 269 WWAVVSVLYGSLAAIAQTDMKKMVAYSSVGHMGYILLAAAAITPLSILGTVLQMVSHGLI 328 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLV---HNMPRYAVVMMVFTMANMGLPGTSGFIGEF 396 S+ +F VGV+Y + TRD+ GL+ +P +M++ MA+ G+PG GFI EF Sbjct: 329 SALMFLLVGVVYKKTGTRDLTILRGLMAPERGLPFIGSLMVLGAMASAGIPGMIGFISEF 388 Query: 397 LVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-------QLKDLSL 449 +V F++ + G L+++Y L + +V FG L +S Sbjct: 389 IVFRGSFESQAPQTLFCMLGSGLTSVYFLLMINRVFFGRLDAAPDGTGGTIEVTLPKVSW 448 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 R+R + ++ FG+ P + +S + NYT Sbjct: 449 RDRVPAMTLVLIIFAFGLQPAWLTRWMESTTNSFVPNYT 487 >gi|197107612|gb|ACH42386.1| NADH dehydrogenase subunit 4 [Sporochnus pedunculatus] Length = 246 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 128/243 (52%), Positives = 172/243 (70%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 ++LTT + P C+L+SW + + + Y+I FL +E +++ F SLD+L FYIFFE LIPM Sbjct: 4 ILLTTLIFPICLLASWSFEKGSLKTYLICFLSMELVLLLVFTSLDLLFFYIFFETVLIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG++G ER I AAY FFLYT FGS+FML V + S+ ++ ++ F Sbjct: 64 FLVIGIYGSRERKIRAAYMFFLYTLFGSLFMLIG-VAYIYLSAGSTNYEVLSVVSFSSYA 122 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 123 QNWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 182 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P A YF P+IF LSL ++YASL ++ QTD+K+LIAY+S+AHM V IG+F+G GVE Sbjct: 183 PAACIYFTPLIFSLSLFGVVYASLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGVE 242 Query: 328 GAM 330 A+ Sbjct: 243 AAI 245 >gi|193806306|sp|A6MM87|NU4C_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 501 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 161/496 (32%), Positives = 270/496 (54%), Gaps = 14/496 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +ILF Y G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVLPISAGSLILFLPYKGNKTIRWYTICICILELLITTYAFCYH-FQLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y W+++F + LG+DG+SI ++LT F+T L++ + + + R + L + Sbjct: 64 LEEDYKWVNFFDFHWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLLHLLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGGKKRLYSATKFILYTAGGSIFLLMG 182 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M ++ ++ +P +++ + F +FA+K P+ P HTWLP+ H +A Sbjct: 183 VLGMDLYGSNEPTLNFETLANQSYPVALEILFYFGFIIAFAVKSPIIPLHTWLPDTHGEA 242 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S Q ++ Sbjct: 243 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVGTMQIIYAASTSPGQRNL 302 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KKRIAYSSVSHMGFIIIGIGSITDAGLNGAILQIISHGFIGAALFFLAGTSYDRIRLIYL 362 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 363 DEMGGIAIQMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 423 MAIGMILTPIYSLSMSRQMFYGYKLFNTTNSFFSDSGPRELFVSISIFLPVIGIGIYPDF 482 Query: 472 IRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 483 VLSLSVDKVEAILSNY 498 >gi|116747657|ref|YP_844344.1| proton-translocating NADH-quinone oxidoreductase subunit M [Syntrophobacter fumaroxidans MPOB] gi|116696721|gb|ABK15909.1| proton-translocating NADH-quinone oxidoreductase, chain M [Syntrophobacter fumaroxidans MPOB] Length = 506 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 150/477 (31%), Positives = 260/477 (54%), Gaps = 10/477 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRS 60 + P LS + LG+ VILF + R V+LG + + + L+++ +D + Sbjct: 23 HFPILSTILLSTVLGLLVILF---IPADRPKLIKQVSLGFAGLGLVLCLWLYQAYDLQKG 79 Query: 61 SFQMIEYYHWIDYFCSYHL-GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q +E + W++ Y+ VDGI++ +++LT + + + W ++ +E+ Sbjct: 80 GLQFVERFLWVESLGIYYFNAVDGINLPMLLLTAVVLFTGVWTMW-DLELRVKEFFALVF 138 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +L + V G F+S+D+ +++++ SL PM+ +I +WG + + Y A K LY GS +L Sbjct: 139 LLVAGVYGVFMSMDLFWIFVWYDVSLFPMYPLIAIWGSTRKEYGAMKLTLYLLAGSALIL 198 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 I+ + W + DL+ + K FS Q +I F+ F I ++P HTW P HV Sbjct: 199 PGILYL-WAQAGGVTFDLFELQKIGFSPFAQKLAFIFFYIGFGILAAVWPLHTWSPVGHV 257 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 APTA S+ AG+++K+G YG +R + L P Y+A ++ L + I+Y + V + QT Sbjct: 258 AAPTAVSMIHAGVLMKLGAYGILRLGMTLCPEGLAYWADLMALLGTVGIVYGAFVGLAQT 317 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K +I YSS++HMG V +G+ + +G+ GA+FQM +HG++++ F VG IYDR HT+ Sbjct: 318 DLKYVIGYSSVSHMGMVGLGLSTMTVNGINGAVFQMFAHGVMTALFFSAVGYIYDRTHTK 377 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I GGL MP + +V + +G+P + F E LV +S + +LA FG+ Sbjct: 378 MIPDLGGLSRTMPVASAFFIVAAFSGIGVPCMASFWAELLVFLSAVKTYPVRGILAVFGL 437 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 V+SAL+ L + ++ +G + E+ + D+ L + + +FFGI+P + D Sbjct: 438 VVSALFMLRVVQRTFYG-ERNERWAHIPDVPLFLATPRIILVSIIIFFGIFPKLMLD 493 >gi|115523739|ref|YP_780650.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris BisA53] gi|115517686|gb|ABJ05670.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodopseudomonas palustris BisA53] Length = 480 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 146/404 (36%), Positives = 224/404 (55%), Gaps = 9/404 (2%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 W+ F S + +DG+S L+ + L +++SW I+ + + S IG Sbjct: 62 WVPSFGISINFALDGLSAALIGIAAGLGIIGVMASWHEIKVDSGLFHACLCWTVSATIGV 121 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF---FGSIFMLFAIVVM 185 FLS D+L+F F+EA LIP F++I VWG + AA KF ++ FG + +F + M Sbjct: 122 FLSFDLLVFAFFWEAQLIPSFMLIAVWGHGAKESAALKFLIFNAVAGFGLLAGVFGLASM 181 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + T + L + K +Q W+ + F +F +K+ + PFH WLP+AH APTAGS+ Sbjct: 182 A-DTMTFNAFTLAEL-KLSTPMQVWLLLGFSLAFLVKLSVPPFHAWLPDAHTLAPTAGSI 239 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LAG++LK G YG RF LFP AP L +Y +V+ QTD K+L+AY Sbjct: 240 LLAGLLLKTGAYGLFRFSPMLFPDGLLVLAPYGIALGAAGALYGGVVACGQTDAKRLVAY 299 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 +S+AHM V +G+ +G + + GA +M++H +SALF +G +Y+R TRD+ GGL Sbjct: 300 TSVAHMCIVLMGVAAGTEYALAGAAVEMVAHSFSASALFLLIGALYERTQTRDLGELGGL 359 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 + PR+A +F A + LPGT+ F+GE LV++ +FQ + A+LA +++S +Y Sbjct: 360 QQSAPRFAAAFALFCSALLALPGTANFVGEALVVVGIFQVNWPFALLALSTLIVSVVYGT 419 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L + V FG + V +DL RE V +A T+ G+YP Sbjct: 420 RLLKGVTFGAASPAVV---RDLGWREIATVLTLAAGTIVVGLYP 460 >gi|154362203|ref|YP_001294235.2| NADH-plastoquinone oxidoreductase subunit 4 [Buxus microphylla] Length = 502 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 161/496 (32%), Positives = 270/496 (54%), Gaps = 14/496 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +ILF Y G ++ + + I + F + F Q Sbjct: 6 PWLTIIVVLPISAGSLILFLPYKGNKTIRWYTICICILELLITTYAFCYH-FQLDDPLIQ 64 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y W+++F + LG+DG+SI ++LT F+T L++ + + + R + L + Sbjct: 65 LEEDYKWVNFFDFHWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLLHLLMLAMY 123 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 124 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGGKKRLYSATKFILYTAGGSIFLLMG 183 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M ++ ++ +P +++ + F +FA+K P+ P HTWLP+ H +A Sbjct: 184 VLGMDLYGSNEPTLNFETLANQSYPVALEILFYFGFIIAFAVKSPIIPLHTWLPDTHGEA 243 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S Q ++ Sbjct: 244 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVGTMQIIYAASTSPGQRNL 303 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 304 KKRIAYSSVSHMGFIIIGIGSITDAGLNGAILQIISHGFIGAALFFLAGTSYDRIRLIYL 363 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 364 DEMGGIAIQMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFV 423 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 424 MAIGMILTPIYSLSMSRQMFYGYKLFNTTNSFFSDSGPRELFVSISIFLPVIGIGIYPDF 483 Query: 472 IRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 484 VLSLSVDKVEAILSNY 499 >gi|288903522|ref|YP_003434277.1| NADH dehydrogenase subunit 4 [Candida sojae] gi|162401884|gb|ABO27143.1| NADH dehydrogenase subunit 4 [Candida sojae] Length = 463 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 133/392 (33%), Positives = 232/392 (59%), Gaps = 11/392 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFF 141 DGI+ + ++LT +L P I+++W +++ ++ L L ++++ F+ DML FY++F Sbjct: 52 DGIADIFILLTAYLLPLSIIANWNNVKGILFYELV--LNLGAILLINFMCQDMLSFYVYF 109 Query: 142 EASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI---VVMCWEKKTSSIIDLY 198 EASL P+F++IG++G S R A+ +YT F S+FML AI V+ SI Sbjct: 110 EASLAPLFILIGLYGASNRDKASDYILIYTLFSSLFMLLAIGTYEVLIGNTDYQSI---- 165 Query: 199 AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 ++ +Q ++++ +K P+ P HTWLP H ++P AGS+ LAG++LK+ Y Sbjct: 166 SLVVLSTDLQCILFLSLTIGIMVKTPLVPVHTWLPVVHSESPLAGSMLLAGVILKLAIYA 225 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 IR ++P A+ + P+ + + +I IIY SL+++ Q+D+K ++AYSSI+HM +GI Sbjct: 226 LIRLVIPSLSDATVLYTPIAYLICVITIIYTSLITLRQSDLKVIVAYSSISHMAVCILGI 285 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMM 377 S +G+ G++ ++HG VS ALF V G++YDR H R I+ Y GL+ MP ++ ++ Sbjct: 286 LSNSLTGINGSLVLGIAHGFVSPALFIIVGGILYDRYHNRLIYYYQGLITYMPILSIYLL 345 Query: 378 VFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSK 437 + + +N+G P T FIGE L + S + +++ V+LSA Y L + ++ G+ + Sbjct: 346 ILSFSNIGTPLTVNFIGELLSLTGAINRSAILGSISTLSVLLSAAYMLKVTNRLTGGI-R 404 Query: 438 CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + D + RE ++ + + T+F+GI+P Sbjct: 405 TPYIALTSDCTYRESLLMLALIIPTIFYGIFP 436 >gi|154362204|ref|YP_001123601.2| NADH dehydrogenase ND4 [Draba nemorosa] Length = 501 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 161/498 (32%), Positives = 276/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 4 DFPWLTIIVVFPISAGSLMLFLPHRGNKINKWYTICICILELLITTYAFCYN-FKMDDPL 62 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 QM E Y WI++F + LG+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 63 IQMSEDYKWINFFDFDWRLGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLMLA 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 122 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 181 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F + +K P+ P HTWLP+ H + Sbjct: 182 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFVIALTVKSPIIPLHTWLPDTHGE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 242 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPWLMAVGTIQIIYAASTSPGQRN 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 302 LKKRIAYSSVSHMGFIIIGIGSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRMRLVY 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV------- 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 362 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFVISKILIIF 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ L D RE + I + + GIYP Sbjct: 422 VMAIGIILTPIYLLSMSRQMFYGY-KLSNVKNLSFFDSGPRELFLSISILLPIIGIGIYP 480 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 481 DFVLSLASDKVESILSNY 498 >gi|146762336|gb|ABQ45300.1| NADH-plastoquinone oxidoreductase subunit 4 [Buxus microphylla] Length = 507 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 161/496 (32%), Positives = 270/496 (54%), Gaps = 14/496 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +ILF Y G ++ + + I + F + F Q Sbjct: 11 PWLTIIVVLPISAGSLILFLPYKGNKTIRWYTICICILELLITTYAFCYH-FQLDDPLIQ 69 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y W+++F + LG+DG+SI ++LT F+T L++ + + + R + L + Sbjct: 70 LEEDYKWVNFFDFHWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLLHLLMLAMY 128 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 129 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGGKKRLYSATKFILYTAGGSIFLLMG 188 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M ++ ++ +P +++ + F +FA+K P+ P HTWLP+ H +A Sbjct: 189 VLGMDLYGSNEPTLNFETLANQSYPVALEILFYFGFIIAFAVKSPIIPLHTWLPDTHGEA 248 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S Q ++ Sbjct: 249 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVGTMQIIYAASTSPGQRNL 308 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 309 KKRIAYSSVSHMGFIIIGIGSITDAGLNGAILQIISHGFIGAALFFLAGTSYDRIRLIYL 368 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 369 DEMGGIAIQMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFV 428 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 429 MAIGMILTPIYSLSMSRQMFYGYKLFNTTNSFFSDSGPRELFVSISIFLPVIGIGIYPDF 488 Query: 472 IRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 489 VLSLSVDKVEAILSNY 504 >gi|193806300|sp|A4QL71|NU4C_DRANE RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 161/498 (32%), Positives = 276/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 3 DFPWLTIIVVFPISAGSLMLFLPHRGNKINKWYTICICILELLITTYAFCYN-FKMDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 QM E Y WI++F + LG+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 62 IQMSEDYKWINFFDFDWRLGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F + +K P+ P HTWLP+ H + Sbjct: 181 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFVIALTVKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPWLMAVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGIGSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRMRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV------- 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 361 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFVISKILIIF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ L D RE + I + + GIYP Sbjct: 421 VMAIGIILTPIYLLSMSRQMFYGY-KLSNVKNLSFFDSGPRELFLSISILLPIIGIGIYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 480 DFVLSLASDKVESILSNY 497 >gi|323345264|ref|ZP_08085487.1| NADH-quinone oxidoreductase subunit M [Prevotella oralis ATCC 33269] gi|323093378|gb|EFZ35956.1| NADH-quinone oxidoreductase subunit M [Prevotella oralis ATCC 33269] Length = 493 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 142/417 (34%), Positives = 236/417 (56%), Gaps = 7/417 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 +Y +GVDGIS+++++L+ + +SW+ +Q + Y + F +L V G F+S DM Sbjct: 76 AYSVGVDGISVVMLLLSAIIVFTGTFASWQ-LQPMKKGYFLWFTLLSIGVFGFFISTDMF 134 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + YAA K L GS ++ I+ + + T Sbjct: 135 TMFMFYEVALIPMYLLIGVWGSGPKEYAAMKLTLMLMGGSALLILGILGIYFFSGATTMD 194 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + + AM P IQ + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 195 VQAIAAMHNIPVHIQKIFFPFIFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 254 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A+Q + + L+ I+++Y + + VQTD+K + AYSS++H G Sbjct: 255 LGGYGCFRIAMYLLPEAAQQLSWIFLILTTISVVYGAFSACVQTDLKYINAYSSVSHCGL 314 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GGL+ MP + Sbjct: 315 VLFALLMMTQTSCTGAVLQMLSHGLMTALFFALIGMIYGRTHTRDVRKLGGLMKIMPFLS 374 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V ++ +AN+GLPG SGFI E + + F N++ T ++A +V++A+Y L + Sbjct: 375 VGYVIAGLANLGLPGLSGFIAEMTIFVGSFANNDTFHRTATIIACTSIVITAVYILRVVG 434 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 K+++ + L D + ER V + G++P+ + S + I++N Sbjct: 435 KILYQKVADPHYETLTDATWDERVAVICLIACVAGLGLFPLWASNVISDAVGPILQN 491 >gi|281424350|ref|ZP_06255263.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Prevotella oris F0302] gi|281401619|gb|EFB32450.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Prevotella oris F0302] Length = 500 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 141/417 (33%), Positives = 242/417 (58%), Gaps = 7/417 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 +Y +GVDGIS+++++L+ + +SW+ ++ +EY + F++L V G F+S D+ Sbjct: 76 AYSVGVDGISVVMILLSAVIVFTGTFASWQ-LEPMKKEYFLWFVLLSIGVFGFFISTDLF 134 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + YAA K L GS ++ I+ + + T + Sbjct: 135 TMFMFYEVALIPMYLLIGVWGTGPKEYAAMKLTLMLMGGSALLVIGILGIYYFSGATTMN 194 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 I ++ A+ P S+Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 195 INEIAALHNIPVSVQKVFFPFIFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 254 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A+Q + + L+ +++Y +L + VQTD+K + AYSS++H G Sbjct: 255 LGGYGCFRIAMYLLPEAAQELSWIFLILTTCSVVYGALSACVQTDLKYINAYSSVSHCGM 314 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F C+G+IY R TRD+ GGL+ +P + Sbjct: 315 VLFALCMMTQTAITGAVLQMLSHGLMTALFFACIGMIYHRAGTRDVRYLGGLMKVLPFLS 374 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V +V +AN+GLPG SGF+ E + + FQN + ++A +V++A+Y L + Sbjct: 375 VAYVVAGLANLGLPGFSGFVAEMTIFVGSFQNGDMFHRVCTIIACSSIVITAVYILRVVG 434 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 K++F K +L D + ER + + G++P+ + S + II++ Sbjct: 435 KILFQKVANPKFFELHDATWDERFAIGGLIFCVAGLGLFPLWANNVISDSVGPIIDH 491 >gi|193806293|sp|A4QJY2|NU4C_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 162/498 (32%), Positives = 278/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 3 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 61 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++F Y +G+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 62 IQLSEDYKWINFFDFYWRMGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +IAF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIAFLIAFAVKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 361 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 421 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 480 DFVLSLASDKVESILSNY 497 >gi|134286804|dbj|BAF50426.1| NADH dehydrogenase ND4 [Draba nemorosa] Length = 506 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 161/498 (32%), Positives = 276/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 9 DFPWLTIIVVFPISAGSLMLFLPHRGNKINKWYTICICILELLITTYAFCYN-FKMDDPL 67 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 QM E Y WI++F + LG+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 68 IQMSEDYKWINFFDFDWRLGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLMLA 126 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 127 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 186 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F + +K P+ P HTWLP+ H + Sbjct: 187 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFVIALTVKSPIIPLHTWLPDTHGE 246 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 247 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPWLMAVGTIQIIYAASTSPGQRN 306 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 307 LKKRIAYSSVSHMGFIIIGIGSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRMRLVY 366 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV------- 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 367 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFVISKILIIF 426 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ L D RE + I + + GIYP Sbjct: 427 VMAIGIILTPIYLLSMSRQMFYGY-KLSNVKNLSFFDSGPRELFLSISILLPIIGIGIYP 485 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 486 DFVLSLASDKVESILSNY 503 >gi|139389469|ref|YP_001123165.1| NADH dehydrogenase subunit 4 [Olimarabidopsis pumila] gi|134286363|dbj|BAF49990.1| NADH dehydrogenase ND4 [Olimarabidopsis pumila] Length = 506 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 162/498 (32%), Positives = 278/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 9 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 67 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++F Y +G+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 68 IQLSEDYKWINFFDFYWRMGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLMLA 126 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 127 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 186 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +IAF +FA+K P+ P HTWLP+ H + Sbjct: 187 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIAFLIAFAVKSPIIPLHTWLPDTHGE 246 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 247 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 306 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 307 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 366 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 367 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 426 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 427 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 485 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 486 DFVLSLASDKVESILSNY 503 >gi|197107580|gb|ACH42370.1| NADH dehydrogenase subunit 4 [Durvillaea potatorum] Length = 246 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 127/243 (52%), Positives = 173/243 (71%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 V+LTT + P C+L SW + N + Y+I+FL +E +++ F SLD+L FYIFFEA LIPM Sbjct: 4 VLLTTLIFPLCLLGSWTFKKGNLKTYLISFLSMELILLLVFTSLDLLFFYIFFEAVLIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG++G +R I AAY FFLYT GS+FML VV + S+ ++ ++ KF Sbjct: 64 FLVIGIFGSRQRKIRAAYMFFLYTLLGSLFMLIG-VVYIYLVVGSTNYEVMSVIKFSLYN 122 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APT+GSV LAGI+LK+G YG +RF L LF Sbjct: 123 QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTSGSVILAGILLKLGSYGFLRFSLGLF 182 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P A YF P IF LS++ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G G+E Sbjct: 183 PEACVYFTPFIFSLSVLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGIE 242 Query: 328 GAM 330 A+ Sbjct: 243 AAI 245 >gi|197131448|gb|ACH47242.1| NADH-plastoquinone oxidoreductase subunit 4 [Pelargonium cotyledonis] Length = 508 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 154/482 (31%), Positives = 271/482 (56%), Gaps = 23/482 (4%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ P +I F + G ++ L + ++ + + + +S F Sbjct: 11 PWLTIIVIFPISAGSLIFFLPHRGNKVTKWY--TLCVCSLELLLTAYAFSYHFQLDDPLI 68 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y+WI +F ++ LG+DG+S+ ++LT F+T L++W I + R + L + Sbjct: 69 QLVEDYNWILFFHFNWRLGIDGLSLGPILLTGFITTLAALAAWP-ITRDSRLFHFMMLAM 127 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y++ KF LYT SIF+L Sbjct: 128 YSGQIGSFSSQDLLLFFIMWELELIPVYLLLSIWGGKKRLYSSTKFILYTAGSSIFLLIG 187 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + + ++ A +P +++ ++I F +FA+K P+ P HTWLP+ H +A Sbjct: 188 VLGIGLYGSNEPTFNFEISAHRSYPAALEIILYIGFLIAFAVKSPIIPLHTWLPDTHGEA 247 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I I+YA+ S+ Q ++ Sbjct: 248 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPYLIIVGAIQIVYAASTSLGQRNL 307 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 308 KKRIAYSSVSHMGFIIIGIGSITDAGLSGALLQIISHGFIGAALFFLAGTSYDRIRLGFF 367 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 368 DEMGGMAVSIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKLIITFV 427 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRER----CMVYPIAVLTVFFGI 467 + G++L+ +YSL + R++ +G D RE C++ P+ + GI Sbjct: 428 MAIGMILTPIYSLSMLRQMFYGYRLFNAPNSSFFDSGPRELFVSICILLPV----IGMGI 483 Query: 468 YP 469 YP Sbjct: 484 YP 485 >gi|299140918|ref|ZP_07034056.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Prevotella oris C735] gi|298577884|gb|EFI49752.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Prevotella oris C735] Length = 500 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 144/422 (34%), Positives = 244/422 (57%), Gaps = 8/422 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 +Y +GVDGIS+++++L+ + +SW+ ++ +EY + F++L V G F+S D+ Sbjct: 76 AYSVGVDGISVVMILLSAVIVFTGTFASWQ-LEPMKKEYFLWFVLLSIGVFGFFISTDLF 134 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + YAA K L GS ++ I+ + + T + Sbjct: 135 TMFMFYEVALIPMYLLIGVWGTGPKEYAAMKLTLMLMGGSALLVIGILGIYYFSGATTMN 194 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 I ++ A+ P S+Q + F F + +FPFHTW P+ H APTA S+ AG+++K Sbjct: 195 INEIAALHNIPVSVQKVFFPFIFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMK 254 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYGC R + L P A+Q + + L+ +++Y +L + VQTD+K + AYSS++H G Sbjct: 255 LGGYGCFRIAMYLLPEAAQELSWIFLILTTCSVVYGALSACVQTDLKYINAYSSVSHCGM 314 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + ++ + GA+ QMLSHGL+++ F C+G+IY R TRD+ GGL+ +P + Sbjct: 315 VLFALCMMTQTAITGAVLQMLSHGLMTALFFACIGMIYHRAGTRDVRYLGGLMKVLPFLS 374 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYR 429 V +V +AN+GLPG SGF+ E + + FQN + ++A +V++A+Y L + Sbjct: 375 VAYVVAGLANLGLPGFSGFVAEMTIFVGSFQNGDMFHRVCTIIACSSIVITAVYILRVVG 434 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTL 489 K++F K +L D + ER + + G++P+ + S + II N+ L Sbjct: 435 KILFQKVANPKFFELHDATWDERFAIGGLIFCVAGLGLFPLWANNVISDSVGPII-NHIL 493 Query: 490 KT 491 T Sbjct: 494 GT 495 >gi|327403956|ref|YP_004344794.1| proton-translocating NADH-quinone oxidoreductase subunit M [Fluviicola taffensis DSM 16823] gi|327319464|gb|AEA43956.1| proton-translocating NADH-quinone oxidoreductase, chain M [Fluviicola taffensis DSM 16823] Length = 478 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 151/440 (34%), Positives = 254/440 (57%), Gaps = 13/440 (2%) Query: 57 KGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 + Q+ W+ + + G DGIS+L+++LT L P ++S++K+ R + Sbjct: 47 NNDGTVQLFANKQWL-FGITLSFGYDGISLLMLLLTAVLVPLVLVSNFKNELAENRLFTS 105 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 ++ +IG F+S+D L FY+F+E +LIP+F+I +G ER A KFF+YTF GS+ Sbjct: 106 MVFFMQLGLIGVFISMDGLWFYVFWEITLIPIFLISWWFGAPERKAALMKFFIYTFVGSL 165 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ML A++ + + I DL A+ F W+ + FF +FAIKIP+FPFHTW P+ + Sbjct: 166 AMLAALIGIKVNAASFQIEDLKAVV-FTSKTACWLALGFFLAFAIKIPIFPFHTWQPDTY 224 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS---QYFAPVIFFLSLIAIIYASLVS 293 ++P AG++ L+GIMLKM YG IR+++PLFP A QYF + L+ I ++YA++++ Sbjct: 225 TKSPMAGTMLLSGIMLKMALYGMIRWMIPLFPEAMPCLQYF---VIVLATIGVVYAAVIA 281 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + Q DIK++ A++S++H+G + I + G+M Q+++HGLV+ LF V +I R Sbjct: 282 IKQKDIKRVFAFASMSHVGLIAAAIMVWDFDALSGSMVQIVNHGLVAVGLFLAVEIIERR 341 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 TR++ GG P++A A++ +P TSGFIGEFL++ + + + ++A Sbjct: 342 TGTRNLADLGGFAKQAPKFAFWFAALAFASVSVPLTSGFIGEFLMLKGLVEFDMIIGIIA 401 Query: 414 SFGVVLSALYSLWLYRKVVFG-VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 ++L A+Y+ Y+ ++G V++ Q DL E ++ I + V G+YP I Sbjct: 402 GTTLILGAVYTFRAYQLSMYGPVTR----DQFADLHWSELFVLAFIVIAVVILGVYPAVI 457 Query: 473 RDTFSVPLSSIIENYTLKTG 492 D + L ++E + +G Sbjct: 458 TDFVNPSLKIVLETLSTPSG 477 >gi|282855262|ref|ZP_06264594.1| NADH dehydrogenase subunit M [Propionibacterium acnes J139] gi|282581850|gb|EFB87235.1| NADH dehydrogenase subunit M [Propionibacterium acnes J139] gi|314983066|gb|EFT27158.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL110PA3] gi|315090599|gb|EFT62575.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL110PA4] Length = 497 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 153/478 (32%), Positives = 263/478 (55%), Gaps = 16/478 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+++ LP +G + + G R+ + S + + ++V+ V G + Sbjct: 1 MSFPILTVIALLPIVGGVITMM--LRGAAARA---TGMVFSLVTLVLGVYVFIV---GVN 52 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAF 118 + E + WI + Y LG DG+S+ +V+L L P +L+ W E R F Sbjct: 53 GTNLSETHRWIRAVGAWYALGGDGLSLTMVLLVVILVPVVLLAEWHVGDDETVRWSTGTF 112 Query: 119 ----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L+LE + I F + D+LLFY+ FEA+LIPM+ +I WGG R AA KF LY+ G Sbjct: 113 FGLALMLEGLAIYCFAATDVLLFYLMFEATLIPMYFLIAGWGGPRRGRAAMKFLLYSLAG 172 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + MLFA++ + + + DL A F +I +++ FF +FAIK PM P HTWLP+ Sbjct: 173 GLVMLFAVIGVGVHGGSFLLSDL-AKVDFSGAIGKELFVGFFIAFAIKAPMVPVHTWLPD 231 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 QA S L G++ K+G +G +R L LFP AS + P + L++I++++ ++++ Sbjct: 232 TAEQATAGASSLLVGLLDKIGTFGMLRLCLGLFPAASDWATPFVLTLAIISVLWGAMMAA 291 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 +D+ + ++Y+S++H G++ IGIF+ + + G++F M +HG ++ALF +G + R Sbjct: 292 TSSDLMRFVSYTSVSHFGFMVIGIFALTTTSITGSIFYMFNHGFSTAALFLVLGFLVRRG 351 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T + YGG+ P A + +A + LPGT F+ EF+ + + +++ Sbjct: 352 GTAKVDGYGGVQKVAPVLAGTFLFAGLATLSLPGTGNFVSEFMALAGAWSRHPIYVAIST 411 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 G+VL+A+Y L YR+ + G + +Q+ DL+ RE+ ++ P+ +L + FG P P+ Sbjct: 412 IGMVLAAVYVLVTYRRTMTGPVQGVS-EQVSDLNGREKLVLAPLIILLLVFGFVPRPM 468 >gi|254413911|ref|ZP_05027680.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Microcoleus chthonoplastes PCC 7420] gi|196179508|gb|EDX74503.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Microcoleus chthonoplastes PCC 7420] Length = 504 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 163/504 (32%), Positives = 267/504 (52%), Gaps = 20/504 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + LP +G ++ F + +AL ++T + +L++ + FD S Q Sbjct: 2 LSTLIGLPVVGAIIVGFLPG-EVAKTRLRAIALAVATAIVLVTLWLATQFDITYSGCQFQ 60 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E WI SY LG DG+S L+ L + L I SS ++ +Y + LV + Sbjct: 61 EELTWIPQLGLSYKLGADGLSFPLLALGSLLNWVVIFSSRVDVERLRLKYALILLV-NAG 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V GAFL+ ++LLF +F+E LIP++++I +WGGS+R YAA KF +YT I +L A + Sbjct: 120 VTGAFLAQNLLLFVLFYELVLIPLYLLIAIWGGSKREYAAMKFLIYTAVSGILILAAFLG 179 Query: 185 MCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + W ++S + + Q + F IKIP+ P HTWLP+A+V+A Sbjct: 180 ITWLSNSTSFNYEAIQTQGLSLTTQLVLLTILLVGFGIKIPLVPLHTWLPDAYVEASPVV 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 ++ L G++ KMG YG +R+ L LFP A AP + + +++++Y +L ++ Q DIK+++ Sbjct: 240 AILLGGVVAKMGTYGLVRYGLQLFPEAWSLVAPGLSIVGVVSVLYGALSAIAQKDIKRMV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI HMGY+ + + + G + QM+SHG++ + LF+ VGV+ ++ TR++ Sbjct: 300 AYSSIGHMGYIVVAAAALTPLSLLGCVIQMVSHGMILAILFYLVGVVETKVGTRELDVLN 359 Query: 364 GLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV----AVLASFG 416 GL++ +P + ++++ MA+ G+PG GF+ EFL VFQ S V +L F Sbjct: 360 GLMNPTRGLPLVSALLILGGMASAGIPGLVGFVAEFL----VFQGSYVVFPWQTILCIFA 415 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI---- 472 L+A+Y + L + FG K K L E+ +AV+ F GI P + Sbjct: 416 SGLTAVYFVILLNRTCFGKLDNRKAYYPKVL-WNEKAPAIILAVIIFFLGIQPTWLVRWT 474 Query: 473 RDTFSVPLSSIIENYTLKTGYSDS 496 T + +S++ K +DS Sbjct: 475 ETTTNAIVSAVPTQVDQKVAMADS 498 >gi|282899527|ref|ZP_06307491.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Cylindrospermopsis raciborskii CS-505] gi|281195406|gb|EFA70339.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Cylindrospermopsis raciborskii CS-505] Length = 495 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 174/471 (36%), Positives = 273/471 (57%), Gaps = 12/471 (2%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS + LP +G VI+F +S G R ++L I+ + F++++ + FD + + Q Sbjct: 3 LSTLILLPLIGAAVIVFYPTSISGKTARQ---ISLAIAGMIFLWTVLLTIRFDPNQGNVQ 59 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E WID +Y LGVDG+S+ L++L LT I S+ +SIQ Y + FL L Sbjct: 60 FTESLIWIDVLGLNYRLGVDGLSLPLLLLNGILTVIAIYSTDESIQRPKFYYSLIFL-LS 118 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + VIGAFL+ D+LLF++F+E LIP++++I +WGG + YAA KF +YT I +L + Sbjct: 119 TGVIGAFLAQDLLLFFLFYELELIPLYLLIAIWGGIRKGYAATKFLIYTALSGILILASF 178 Query: 183 VVMCWEKKTSS-IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + M W + S ++ P + Q + F IKIP+ PFHTWLP+AHV+A T Sbjct: 179 LGMIWLSHSPSFALETVNAHTLPLTTQLLLLAGIIIGFGIKIPLVPFHTWLPDAHVEAST 238 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 SV LAG++LK+G YG +RF + L P A +Y AP + ++I++++ + ++ Q D+KK Sbjct: 239 PISVLLAGVLLKLGTYGLVRFGMNLLPQAWEYAAPTLATWAVISVLFGASCAIAQKDMKK 298 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 ++AYSSI HMGY+ + + V GA+ QM+SHGL+S+ LF VGV+Y + +RD+ Sbjct: 299 MVAYSSIGHMGYILLATAAATPLSVLGAIMQMVSHGLISAMLFLLVGVVYKKAGSRDLEV 358 Query: 362 YGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 GL++ MP +M++ MA+ G+PG GFI EF++ ++ +L+ G Sbjct: 359 LRGLLNPERGMPVVGTLMILGVMASAGIPGMVGFISEFIIFRGSYEVFPVQTLLSMVGTG 418 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+A+Y L L + FG +V +L + L +R +A L + GI P Sbjct: 419 LTAVYFLILVNRAFFG-RLSPQVVRLPRVYLSDRLPAVVLAGLIIILGIQP 468 >gi|91208956|ref|YP_538990.1| NADH dehydrogenase subunit 4 [Gossypium hirsutum] gi|119368549|ref|YP_913236.1| NADH dehydrogenase ND4 subunit [Gossypium barbadense] gi|325210975|ref|YP_004286053.1| NADH-plastoquinone oxidoreductase subunit 4 [Gossypium thurberi] gi|122238620|sp|Q2L955|NU4C_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|125956573|sp|A0ZZ85|NU4C_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|85687470|gb|ABC73682.1| NADH-plastoquinone oxidoreductase subunit 4 [Gossypium hirsutum] gi|119224911|dbj|BAF41297.1| NADH dehydrogenase ND4 subunit [Gossypium barbadense] gi|290775837|gb|ADD62333.1| NADH-plastoquinone oxidoreductase subunit 4 [Gossypium thurberi] Length = 500 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 158/495 (31%), Positives = 274/495 (55%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ FLP ++ F + G ++ + + I + F + F Q Sbjct: 5 PWLTIIVFLPISAGSLLFFLPHKGNKLIKWYTICICILELLLTTYAFCYH-FRLDDPLIQ 63 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E Y WI++F Y LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LAEDYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLIGV 182 Query: 183 VVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ ++ +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGLGLYGSNEPTLNFETLANQSYPVALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLIIVGTMQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRMRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGMAVSIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +YSL + R++ +G D RE + I + + GIYP + Sbjct: 423 AIGMILTPIYSLSMSRQMFYGYKLFNAPSSYFFDSGPRELFVSISIFLPVIGIGIYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + +I+ NY Sbjct: 483 LSLSGEKVETILYNY 497 >gi|296133528|ref|YP_003640775.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermincola sp. JR] gi|296032106|gb|ADG82874.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermincola potens JR] Length = 509 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 170/506 (33%), Positives = 279/506 (55%), Gaps = 34/506 (6%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGIST-INFIFSLFVWSVFDKGR 59 M+ P L+ + P +G L + ++ + IST I+ ++ ++ ++ K Sbjct: 1 MDFPILTTILLAPIIGA---LINVFIPKEEAKTIKIVSAISTFISLALTVVIFVIYYKNH 57 Query: 60 --SSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 +Q E W+ D +Y LGVDG+S+ L++LT + + SSW SI +E+ I Sbjct: 58 LGGGYQFTETIPWVPDLGVTYALGVDGLSLPLLLLTNLIGFTAVYSSW-SIDNRPKEFFI 116 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI------YAAYKFFLY 170 L+L + V+G F++ D+ +F++F+E +IP+++++ +WG + YA K +Y Sbjct: 117 LLLILIAGVMGTFIARDLFIFFLFYEVVVIPIYIMVIIWGSQSKQKPVTKEYAGMKLTIY 176 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS--------IIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 GS F+L ++ W T++ ID A + F + Q ++ F Sbjct: 177 LLIGSAFLLAGLI---WMYVTAADILGAPTFAIDQLAKANFSYEFQVVVFGMMAFGFTTL 233 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 + MFPFH+W P+ + APTA S+ AG++ K+GGYG IR L + PL ++++APVI L+ Sbjct: 234 LSMFPFHSWSPDGYAGAPTAVSMIHAGVLKKIGGYGLIRIGLFVLPLGAKFWAPVIAILA 293 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 + ++YA+L+ + Q D+K ++ YSS++HMG+V IG+ S G+ GA+ M +HG++S+ Sbjct: 294 VGNVVYAALICLAQKDMKYVVGYSSVSHMGFVLIGVASLNIIGLNGAVANMFAHGVMSAL 353 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 F +G +Y HTR I GGL H MPR AV ++ MA+ GLPG F+ EF V + V Sbjct: 354 FFSMIGFLYGSTHTRYIPDLGGLAHQMPRAAVGFVMAAMASAGLPGLVSFVPEFTVFVGV 413 Query: 403 FQ--NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 FQ +A++A GV+L A+Y L + V+FG K E+ L+D + MV PI V Sbjct: 414 FQVPEYRALAIIALTGVILGAVYVLRMVANVLFGPRK-EEFDHLED--AKGPAMV-PIVV 469 Query: 461 LT---VFFGIYPVPIRDTFSVPLSSI 483 L V FG++P I D + ++ I Sbjct: 470 LGAALVLFGVFPSLIMDMVNSGMAPI 495 >gi|197107586|gb|ACH42373.1| NADH dehydrogenase subunit 4 [Leathesia difformis] Length = 246 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 127/243 (52%), Positives = 172/243 (70%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 V+LTT + P C+L+SW + + Y I+FL +E +++ F +LD+L FYIFFEA LIPM Sbjct: 4 VLLTTLIFPLCLLASWSFNKGKVKTYQISFLSMELVLLLVFTNLDLLFFYIFFEAVLIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG++G +R I AAY FFLYT FGS+FML ++ + +++ L + F Sbjct: 64 FLVIGIYGSRQRKIRAAYMFFLYTLFGSLFMLIGVIYIYLFAGSTNYEALVTVG-FSSYD 122 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 123 QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 182 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P AS YF P +F LSLI ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G GVE Sbjct: 183 PEASVYFTPFVFSLSLIGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVKGVE 242 Query: 328 GAM 330 A+ Sbjct: 243 AAI 245 >gi|282896433|ref|ZP_06304454.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Raphidiopsis brookii D9] gi|281198721|gb|EFA73601.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Raphidiopsis brookii D9] Length = 495 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 174/469 (37%), Positives = 271/469 (57%), Gaps = 8/469 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + LP +G VI F GR + ++L I+ + F++++ + FD + + Q Sbjct: 3 LSTLILLPLIGAAVIGFYPASISGRTAR-QISLAIAGMYFLWTVLLTIKFDPNQGNVQFT 61 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E WID +Y LGVDG+S+ L++L LT I S+ +SIQ Y + FL L + Sbjct: 62 ESLIWIDVLGLNYRLGVDGLSLPLLLLNGILTVIAIYSTDESIQRPKFYYSLIFL-LSTG 120 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 VIGAFL+ D+LLF++F+E LIP++++I +WGG + YAA KF +YT I +L + + Sbjct: 121 VIGAFLAQDLLLFFLFYELELIPLYLLIAIWGGIRKGYAATKFLIYTALSGILILASFLG 180 Query: 185 MCWEKKTSS-IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M W + S ++ P + Q + F IKIP+ PFHTWLP+AHV+A T Sbjct: 181 MIWLSHSPSFALETVNAHTLPLTTQLLLLAGIIIGFGIKIPLVPFHTWLPDAHVEASTPI 240 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAG++LK+G YG +RF + L P A +Y AP + ++I++++ + ++ Q D+KK++ Sbjct: 241 SVLLAGVLLKLGTYGLVRFGMNLLPQAWEYAAPTLATWAVISVLFGASCAIAQKDMKKMV 300 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI HMGYV + + V GA+ QM+SHGL+S+ LF VGV+Y + +RD+ Sbjct: 301 AYSSIGHMGYVLLATAAATPLSVLGAIMQMVSHGLISAMLFLLVGVVYKKAGSRDLEVLR 360 Query: 364 GLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL++ MP +M++ MA+ G+PG GFI EF++ ++ +L+ G L+ Sbjct: 361 GLLNPERGMPVVGTLMILGVMASAGIPGMVGFISEFIIFRGSYEVFPVQTLLSMVGTGLT 420 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A+Y L L + FG +V +L + L +R +A L + GI P Sbjct: 421 AVYFLILVNRAFFG-RLSSQVVRLPPVYLSDRLPAVVLAGLIIILGIQP 468 >gi|298373157|ref|ZP_06983147.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298276061|gb|EFI17612.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 496 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 141/414 (34%), Positives = 236/414 (57%), Gaps = 8/414 (1%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 LGVDGIS++++ L++ + + SSW + +E+ + + +L V G F+++D+ + Sbjct: 79 LGVDGISVMMIALSSIIVFTGVFSSWN--MDMAKEFFLWYCLLTIGVFGFFITIDLFSMF 136 Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--IID 196 +F+E +LIPM+++IG+WG ++ Y+A K L GS F++ I+ + + ++ I+D Sbjct: 137 MFYEVALIPMYLLIGLWGTGKKEYSAMKLTLMLMGGSAFLMIGIIGIFFASGATTFNIVD 196 Query: 197 LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 + + P Q W++ F F + +FPFHTW P+ H APT+ S+ AG+++K+GG Sbjct: 197 IANSVRIPIEHQRWIFPVTFLGFGVLGALFPFHTWSPDGHASAPTSVSMLHAGVLMKLGG 256 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 YGC R + L P A+ + L+ I+++Y + ++VQTD+K + AYSS++H G V Sbjct: 257 YGCFRVAIYLMPEAAHELGWIFLILTGISVVYGAFSAVVQTDLKYINAYSSVSHCGLVLF 316 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 I ++ + GA+ QMLSHGL+++ F +G+IY R HTRDI GGL+ MP +V Sbjct: 317 AILMLNQTAMTGAVMQMLSHGLMTALFFSLIGLIYGRTHTRDIREMGGLMKIMPFASVCY 376 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---TV-AVLASFGVVLSALYSLWLYRKVV 432 ++ +A++GLPG SGF+ E + + FQN TV ++A +V++A+Y L K + Sbjct: 377 VIAGLASLGLPGLSGFVAEMTIFVGAFQNKGVFYTVFTIIACCSIVITAVYILRTIGKFL 436 Query: 433 FGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 +G + L D + E+ + V F G YP I S L II Sbjct: 437 YGPIQDSHHIGLPDAAWYEKVSAVGLIVAIAFMGFYPFGISHIISDSLVPIINK 490 >gi|288903404|ref|YP_003434127.1| NADH dehydrogenase subunit 4 [Candida maltosa] gi|162401917|gb|ABX10009.1| NADH dehydrogenase subunit 4 [Candida maltosa] Length = 454 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 142/391 (36%), Positives = 226/391 (57%), Gaps = 9/391 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFF 141 DGI+ + V+L +L P I+++W +I+ Y L + +++ F+ DM+ FY++F Sbjct: 52 DGIADIFVLLVAYLLPLSIIANWNNIKSIL--YFELILAIGIILLINFMCQDMVAFYVYF 109 Query: 142 EASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV--MCWEKKTSSIIDLYA 199 EASL P+F++IG++G + + AA +YT F S+FML I V + + I L Sbjct: 110 EASLAPLFILIGLYGANNKDKAADYILIYTIFSSLFMLIGIAVYEILIGRTDYQSISLVV 169 Query: 200 MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 +S +Q + I+ +K P+ P HTWLP H ++P AGS+ LAG++LK+ Y Sbjct: 170 LST---DLQCVLLISLSIGILVKTPLVPVHTWLPVVHSESPLAGSMLLAGVILKLAIYAI 226 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 IR LLP A + PVI+ +S+I IIY SL+++ QTD+K ++AYSSI+HM +GIF Sbjct: 227 IRLLLPNLSEAVLLYTPVIYLISVITIIYTSLITLRQTDLKVIVAYSSISHMAVCILGIF 286 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 S G+ G++ L+HG VS ALF V G++YDR H R I+ Y GL+ MP A+ ++ Sbjct: 287 SNQLIGLNGSLILSLAHGFVSPALFIIVGGILYDRYHNRLIYYYQGLITYMPLLAIYFII 346 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 F+ N+G P T FIGE + S + +A+ V+LSA Y L + ++ G+ K Sbjct: 347 FSFCNIGTPLTVNFIGELFSLTGAINRSFILGAVATLSVLLSASYMLKITNRLTGGI-KT 405 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + D + RE ++ + + T+++G +P Sbjct: 406 PYIALTSDCTYRESFLMIALLIPTIWYGFFP 436 >gi|298346130|ref|YP_003718817.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063] gi|298236191|gb|ADI67323.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063] Length = 530 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 147/447 (32%), Positives = 254/447 (56%), Gaps = 12/447 (2%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE--NFREYMI 116 +FQ+ E Y W+ S+ LGV+G+ +++++L T LTP IL+SW+ + Y Sbjct: 74 GAFQLGESYEWMPAIGLSWALGVNGLGMVMIILATALTPLVILASWRDDTDPNTAAGYAA 133 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE---RIYAAYKFFLYTFF 173 L LES ++ F + D+LLFYI FE L+P++ ++G +G + R +AA KF LY+ Sbjct: 134 LILALESFMVLLFCARDLLLFYIAFEGMLVPLYFLVGRYGNGDAQVRRHAAIKFVLYSLV 193 Query: 174 GSIFMLFAIV---VMCWEKKTSSIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFH 229 G + MLF I+ V + +D F P + WM + F +FAIK PM P H Sbjct: 194 GGLVMLFGIIGVYVHSGGGDQAFHMDYLTSGNFHPGAAGMWMMMTFLVAFAIKAPMVPVH 253 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+ A SV L G++ K+G +G I F LFP AS APVI L++++I++ Sbjct: 254 TWLPSTAAVARGGTSVLLVGVLDKVGTWGMIMFCWQLFPAASAKVAPVIVVLAVLSILWG 313 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 +L ++ Q D+ +L++++S++H G++ + ++ G ++ +EGAM M++HG+ + LF G Sbjct: 314 ALAAISQKDLLRLVSFTSVSHFGFMVLALYIGSQTAIEGAMLYMVAHGVSIAGLFLLSGW 373 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + R T++I AY G P A + +V +A + LPG SGF+ E+L+++ F+ + Sbjct: 374 LTTRGGTQEIAAYRGFQRVTPTLAGLFLVSGLAAIALPGLSGFLPEYLILVGTFKLNIAA 433 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A+++ GVVL+++Y L Y + G V+ +KDL+ RE+ ++ P+ + G+ P Sbjct: 434 AMVSILGVVLASVYLLVPYLNMFTGPID-GAVRTVKDLNWREKFIMVPLVLAMFGLGVLP 492 Query: 470 VPIRDTFSVPLSSIIENYTLKTGYSDS 496 P + P ++++ ++G + + Sbjct: 493 GPTLNLIK-PDAALMYQAVSQSGSASA 518 >gi|3413803|emb|CAA73990.1| NADH dehydrogenase subunit 4 [Chlorogonium elongatum] Length = 460 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 164/459 (35%), Positives = 250/459 (54%), Gaps = 17/459 (3%) Query: 17 VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCS 76 VF I G +F ++L +S +SL +W FD + FQ +E + Sbjct: 13 VFSIFLLPQTNIGFPTFRFLSLVVSFFPLFWSLVLWGYFDASGAPFQFVENLSGLHL--- 69 Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 G+D + + LVVLTT L P C+ + F + FL+LE +++GA LD+L Sbjct: 70 -SFGIDSVGLSLVVLTTALFPLCV-----CLMRTFSG-IATFLLLEIVILGALTVLDLLG 122 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 FYI FEASLI +F++I I AAYK LYT GS+ +L I ++ E ++++ Sbjct: 123 FYILFEASLILLFLLIA-RTPYGSIDAAYKIVLYTMAGSLVLLPIIFMLYAECGSTNLFV 181 Query: 197 LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 L + P + W FA+KIP+ P H WLP AHV APTAGSV LAG++LK+GG Sbjct: 182 LLDANISPDRQTFLGW-GMLAVFAVKIPLMPVHLWLPEAHVAAPTAGSVLLAGVLLKLGG 240 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 G IR+++PL P + + P++ + L + ++++L ++ Q D+KK++AYSSIAHM VT+ Sbjct: 241 IGFIRYMIPLTPSFTVWVFPLVACMCLCSFLFSTLSTIRQIDLKKIVAYSSIAHMALVTL 300 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 IFS + + F M++HGLVS LF VG++Y+R HT+ + + GL MP ++ + Sbjct: 301 TIFSMSEFSTYSSTFMMIAHGLVSPGLFLLVGLLYERAHTKFLLYFSGLGSYMPIFSTLF 360 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV- 435 + T AN+ P F+ E L + S+F A + VL A+Y+ W + +V+ GV Sbjct: 361 FLLTCANLSFPLFPNFVAEVLCLASLFAVHELYAYVFCVCQVLGAVYAFWAFNRVIHGVG 420 Query: 436 ----SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 S L DLS E M+ P+ V + G+ P+ Sbjct: 421 YTTGSNVMNSGALCDLSRYEIAMIAPLMVGVFWLGLKPM 459 >gi|158339444|ref|YP_001520621.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain M [Acaryochloris marina MBIC11017] gi|158309685|gb|ABW31302.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain M [Acaryochloris marina MBIC11017] Length = 515 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 251/469 (53%), Gaps = 8/469 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ + P + ++ GR+ AL +S + +L V FD G ++ Q Sbjct: 2 LSVLIWFPCIAAIIVALLPQQVTGRKVRLA-ALFLSGAILVLTLAVGFQFDLGNNALQFQ 60 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E W+ D Y LGVDG+S+ L+VL + L I SS + + R + L++ Sbjct: 61 ETRSWLTDLGLDYQLGVDGLSLPLIVLNSLLCWIAIYSS-RVETKRPRLFYALILLINGG 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V GAFL+ ++LLF++F+E LIP +++I +WG +++ AA KF LYT +L + Sbjct: 120 VAGAFLAQNLLLFFLFYEIELIPFYLLISIWGSAQQGSAATKFLLYTATSGGLILAGFLG 179 Query: 185 MCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + W + SS ++ P ++QY + I F IK P+ P HTWLP+ +V A T Sbjct: 180 VIWFSEASSFSYEVLLGQDLPINLQYGVLILLLLGFGIKTPLVPLHTWLPDTYVAASTPV 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 ++ L G++ K+G YG RF +PLFP A Q +PV+ +++++Y SL ++ Q DIK+++ Sbjct: 240 AILLGGVLAKLGTYGIFRFCMPLFPDAWQTLSPVLATWGVVSVLYGSLTAIAQKDIKRMV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+ HMGY+ + + + V GA+ QM +HGL+ + LF VG+I ++ TRD+ Sbjct: 300 AYSSVGHMGYILLAAAAHTELSVVGAISQMFAHGLILALLFHLVGLIETKVGTRDLDVLN 359 Query: 364 GL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL V +P + ++++ MA+ G+PG GFI EFLV + +L+ G L+ Sbjct: 360 GLMNPVRGLPLVSALLVLAGMASAGIPGLVGFIAEFLVFQGSYTAFPIQTLLSVVGTGLT 419 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A+Y + L + FG + ER + L +F G+ P Sbjct: 420 AVYFVILLNRTCFGRLDSSTAYY-PQVQWNERIPALVLMGLIIFLGLQP 467 >gi|295065779|ref|YP_003587719.1| NADH dehydrogenase subunit 4 [Anomochloa marantoidea] gi|251765303|gb|ACT15457.1| NADH dehydrogenase subunit 4 [Anomochloa marantoidea] Length = 500 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 166/500 (33%), Positives = 274/500 (54%), Gaps = 17/500 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ P +ILF + G ++ ++ I + F+ + + F S Sbjct: 5 PWLTILVVFPIFAGSLILFLPHRGNKIVKWYTIS--ICLLEFLLMTYAFCYHFQWEDSLV 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E + WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDFKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWEFELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +D + +P +++ +++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPRLDFEKLINQSYPDTLEILLYLGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A FAP + + + IIYA+ S+ Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYRFAPWLVIIGAMQIIYAASTSLGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTTCDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + +F+MA++ LPG SGF+ E LV + + + + Sbjct: 362 EELGGISIPMPKIFTMFSIFSMASLALPGMSGFVAELLVFFGLITSPKFLLIPKMVITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+ +Y L + R++ +G K V L D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGY-KLFNVPNLNFVDSGPRELFLLICIFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENYTLK 490 + + +I+ N+ LK Sbjct: 481 FVLSLSVERVEAILSNFYLK 500 >gi|134286449|dbj|BAF50075.1| NADH dehydrogenase ND4 [Arabis hirsuta] Length = 506 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 164/498 (32%), Positives = 277/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 9 DFPWLTIIVGFPISAGSLMLFLPHKGNKVNKWYTICICILELLITTYAFCYN-FKMDDPL 67 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 QM E Y WI++F Y LG+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 68 IQMSEDYKWINFFDFYWRLGIDGLSIGTILLTGFITTLAALAAFPVTRDS-RFFHFLMLA 126 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 127 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 186 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 187 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGE 246 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 247 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 306 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 307 LKKRIAYSSVSHMGFIIIGIGSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLIY 366 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 367 LDEMGGTAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 426 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ L D RE + I + + GIYP Sbjct: 427 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNLSFFDSGPRELFLSISILLPIIGIGIYP 485 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 486 DFVLSLASDKVESILSNY 503 >gi|314923982|gb|EFS87813.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL001PA1] gi|314965046|gb|EFT09145.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL082PA2] gi|315093914|gb|EFT65890.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL060PA1] gi|315104133|gb|EFT76109.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL050PA2] gi|327325774|gb|EGE67566.1| NADH-quinone oxidoreductase, M subunit [Propionibacterium acnes HL103PA1] Length = 497 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/478 (32%), Positives = 263/478 (55%), Gaps = 16/478 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ P L+++ LP +G + + G R+ + S + + ++V+ V G + Sbjct: 1 MSFPILTVIALLPIVGGVITMM--LRGAAARA---TGMVFSLVTLVLGVYVFIV---GVN 52 Query: 61 SFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAF 118 + E + WI + Y LG DG+S+ +V+L L P +L+ W E R F Sbjct: 53 GTNLSETHRWIRAVGAWYALGGDGLSLTMVLLVVILVPVVLLAEWHVGDDETARWSTGTF 112 Query: 119 ----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 L+LE + I F + D+LLFY+ FEA+LIPM+ +I WGG R AA KF LY+ G Sbjct: 113 FGLALMLEGLAIYCFAATDVLLFYLMFEATLIPMYFLIAGWGGPRRGRAAMKFLLYSLAG 172 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + MLFA++ + + + DL A F +I +++ FF +FAIK PM P HTWLP+ Sbjct: 173 GLVMLFAVIGVGVHGGSFLLSDL-AKVDFSGAIGKELFVGFFIAFAIKAPMVPVHTWLPD 231 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 QA S L G++ K+G +G +R L LFP AS + P + L++I++++ ++++ Sbjct: 232 TAEQATAGASSLLVGLLDKIGTFGMLRLCLGLFPAASDWATPFVLTLAIISVLWGAMMAA 291 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 +D+ + ++Y+S++H G++ IGIF+ + + G++F M +HG ++ALF +G + R Sbjct: 292 TSSDLMRFVSYTSVSHFGFMVIGIFALTTTSITGSIFYMFNHGFSTAALFLVLGFLVRRG 351 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T + YGG+ P A + +A + LPGT F+ EF+ + + +++ Sbjct: 352 GTAKVDGYGGVQKVAPVLAGTFLFAGLATLSLPGTGNFVSEFMALAGAWSRHPIYVAIST 411 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 G+VL+A+Y L YR+ + G + +Q+ DL+ RE+ ++ P+ +L + FG P P+ Sbjct: 412 IGMVLAAVYVLVTYRRTMTGPVQGVS-EQVSDLNGREKLVLAPLIILLLVFGFVPRPM 468 >gi|154362198|ref|YP_001123250.2| NADH dehydrogenase ND4 [Arabis hirsuta] gi|193806304|sp|A4QK70|NU4C_ARAHI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 164/498 (32%), Positives = 277/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 3 DFPWLTIIVGFPISAGSLMLFLPHKGNKVNKWYTICICILELLITTYAFCYN-FKMDDPL 61 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 QM E Y WI++F Y LG+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 62 IQMSEDYKWINFFDFYWRLGIDGLSIGTILLTGFITTLAALAAFPVTRDS-RFFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGIGSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLIY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 361 LDEMGGTAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ L D RE + I + + GIYP Sbjct: 421 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNLSFFDSGPRELFLSISILLPIIGIGIYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 480 DFVLSLASDKVESILSNY 497 >gi|290486853|gb|ADD29811.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Dillenia indica] Length = 500 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 163/480 (33%), Positives = 270/480 (56%), Gaps = 19/480 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G + F L I + + + +V+ F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--RGNKIFRWYTLCICFLELLLTTYVFCYHFQLNDPLI 62 Query: 63 QMIEYYHWIDYFCSYH--LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y+WI+ F ++H LG+DG+SI ++LT F+T L++W +++ R + L Sbjct: 63 QLAEDYNWIN-FINFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLM 180 Query: 181 AIVVMCWEKKTSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + I + A +P +++ +I F +FA+K+P+ P HTWLP+ H + Sbjct: 181 GVLGISLYGFNEPIFYFETSANQSYPLALEILFYIGFLIAFAVKLPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLSHAHYIFSPWLVIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDRL Sbjct: 301 LKKRIAYSSVSHMGFIIIGIGSITDTGLNGALLQIISHGFIGAALFFLAGTSYDRLRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ +MP+ + F+MA++ LP SGF+ E +V + + + Sbjct: 361 LDEMGGIAISMPKIFTMFSSFSMASLALPSMSGFVAELIVFFGIITSQKFFLMPKILITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +YSL + R++ +G K V D RE ++ I + + GIYP Sbjct: 421 IMAIGMILTPIYSLSMLRQMFYGY-KLFNVPNSYFFDSGPRELFVLISIFLPVIGIGIYP 479 >gi|297625178|ref|YP_003706612.1| proton-translocating NADH-quinone oxidoreductase subunit M [Truepera radiovictrix DSM 17093] gi|297166358|gb|ADI16069.1| proton-translocating NADH-quinone oxidoreductase, chain M [Truepera radiovictrix DSM 17093] Length = 495 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/431 (33%), Positives = 245/431 (56%), Gaps = 16/431 (3%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWID----YFCSYHLGVDGISILLVVLTTFLTPFCILSS 103 +LF W +F Q E WI+ Y+ G G+ L++ T + P + +S Sbjct: 33 TLFTW-LFALALPQAQPFEA-PWIEAVGLYWSLDPAGAGGV--LVLAAATVMLPAALYAS 88 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYA 163 + +++E R ++ L++++ + G FL+ D++LFY+F+EA+LIP +++G+WGG R A Sbjct: 89 F-AVRERTRGFLALLLLMQAGLNGIFLAADLVLFYVFWEATLIPSLLLLGIWGGEGRRQA 147 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--IIDLY-AMSKFPFSIQYWMWIAFFCSFA 220 K+ Y GS ML AI+ + S + DL A PFS Q +++AF +FA Sbjct: 148 TLKYLTYAVAGSFLMLVAILALRPLSGAPSFRLADLLPATQALPFSTQLALFVAFALAFA 207 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P++P H WLP+ H Q +G AG + K+GG+G F LPLFP A+ +P + Sbjct: 208 VKLPLWPLHAWLPDFHEQNHPSGVADAAGTLYKVGGWGFFAFALPLFPEAAAAASPYLLA 267 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 L+ +YA++++ QT +K+L+AY+S++HMG V +G+F +G+ GAM+ + + L + Sbjct: 268 LAAFTAVYAAVIATAQTHLKRLLAYASLSHMGIVGVGVFGLYLAGLNGAMYLLAAQMLST 327 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 LF G++Y R T D+ AYGGL + P A V + A++G+PG + F GEF+ +M Sbjct: 328 GGLFLITGMLYARRETFDLTAYGGLAKSAPGLAAVTLFTLFASIGVPGLANFPGEFMSLM 387 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 FQ S + LA+ V+ + +Y + LY+++ G E Q ++L E ++ P+ Sbjct: 388 GAFQRSPLLGGLATLSVIAAGVYGVNLYQRLFQG----EATLQTRELRWGEAALLAPLLT 443 Query: 461 LTVFFGIYPVP 471 ++FG++P P Sbjct: 444 AILWFGLFPQP 454 >gi|224373435|ref|YP_002607807.1| NADH-quinone oxidoreductase chain m [Nautilia profundicola AmH] gi|223588731|gb|ACM92467.1| NADH-quinone oxidoreductase chain m [Nautilia profundicola AmH] Length = 475 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/397 (35%), Positives = 234/397 (58%), Gaps = 7/397 (1%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 L VD +S+ +++LT L + +SW+ ++N Y ++ + G F++ ++L F+ Sbjct: 73 LRVDALSVAMLLLTAALLILVVFTSWE--EKNQAAYFSLLVLFSGPIFGVFMTTNVLWFF 130 Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 +F+E +L+PMF ++G WGG RIYAA KFFLYT S+FM ++ K + DL Sbjct: 131 MFWELTLVPMFFLVGFWGGERRIYAAVKFFLYTHVASMFMFVGFYLLY---KQTGYWDLT 187 Query: 199 AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 + + + +W F FA K+P FPFHTWLP+AHV+AP++ SV LAG++LKMG YG Sbjct: 188 LIRETALATPALIWWFMFIGFAAKLPAFPFHTWLPDAHVEAPSSISVLLAGVLLKMGAYG 247 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 IRF + L P+ +Q F+ + + L ++A ++++ + IKK++AYSSI+HMG V + I Sbjct: 248 LIRFTVELMPITTQEFSIWMLIIGLNTTLFAGMLAIYERHIKKMVAYSSISHMGLVVVAI 307 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 + G+ A+++M+ H LV S LF G ++ + HT + GG++ P + + ++ Sbjct: 308 ATMTYDGLSAALYEMIGHALVISPLFLIAGWLHHKTHTWYMDEMGGIMKKAPYVSAIFIL 367 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 MA +GLPGT GF+GE +I+S ++ + + ++SA Y +W R+ + G Sbjct: 368 AGMAALGLPGTMGFVGELTIIVSAIKSFGWWIAIIAIASLISAGYIIWAVRRSIHG-EMS 426 Query: 439 EKVQQLK-DLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 VQ+ + +S E+ + A+L V+FGI P PI D Sbjct: 427 PIVQKAEFTMSFPEKAALAIFALLIVYFGIQPQPIFD 463 >gi|313836212|gb|EFS73926.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL037PA2] gi|314927647|gb|EFS91478.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL044PA1] gi|314971354|gb|EFT15452.1| NADH dehydrogenase subunit M [Propionibacterium acnes HL037PA3] gi|328906291|gb|EGG26066.1| NADH dehydrogenase subunit M [Propionibacterium sp. P08] Length = 497 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 154/482 (31%), Positives = 261/482 (54%), Gaps = 24/482 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKG 58 M+ P L+++ LP +G + + G R A G+ S + I ++ F G Sbjct: 1 MSFPILTVIALLPIVGGVITMM--LRGAAAR-----ATGVIFSLVTLILGIYA---FIIG 50 Query: 59 RSSFQMIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + + E WI + Y LG DG+S+ +++L L P +L+ W E+ + Sbjct: 51 VNGTDLSETCRWIRAVGAWYALGGDGLSLTMILLVVILVPVVLLAEWHVGDEDTARWSTG 110 Query: 118 F-----LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF 172 L+LE + I F + D+LLFY+ FEA+LIPM+ +I WGG R AA KF LY+ Sbjct: 111 VFFGLALMLEGLAIFCFAATDVLLFYLMFEATLIPMYFLIAGWGGPRRGRAAMKFLLYSL 170 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 G + MLFA++ + + + DL A F I +++ FF +FAIK PM P HTWL Sbjct: 171 AGGLVMLFAVIGVGVHGGSFLLSDL-AKVDFSGVIGKELFVGFFIAFAIKAPMVPVHTWL 229 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+ QA S L G++ K+G +G +R L LFP AS + P + L++I++++ +++ Sbjct: 230 PDTAEQATAGASSLLVGLLDKIGTFGMLRLCLGLFPAASDWATPFVLTLAIISVLWGAMM 289 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + +D+ + ++Y+S++H G++ IGIF+ + + G++F M +HG ++ALF +G + Sbjct: 290 AATSSDLMRFVSYTSVSHFGFMVIGIFALTTTSITGSIFYMFNHGFSTAALFLVLGFLVR 349 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R T + YGG+ P A + +A + LPGT F+ EF+ + + + Sbjct: 350 RGGTAKVDGYGGVQKVAPVLAGTFLFAGLATLSLPGTGNFVSEFMALAGAWLRHPIYVAV 409 Query: 413 ASFGVVLSALYSLWLYRKVVFG--VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 ++ G+VL+A+Y L YR+ + G CE Q+ DL+ RE+ ++ P+ +L + FG +P Sbjct: 410 STIGMVLAAVYVLVTYRRTMTGPVQGACE---QVSDLTGREKLVLAPLIILLLVFGFFPR 466 Query: 471 PI 472 P+ Sbjct: 467 PM 468 >gi|139387305|ref|YP_001123425.1| NADH dehydrogenase subunit 4 [Capsella bursa-pastoris] gi|134286626|dbj|BAF50250.1| NADH dehydrogenase ND4 [Capsella bursa-pastoris] Length = 506 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 162/498 (32%), Positives = 277/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 9 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 67 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++F Y +G+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 68 IQLSEDYKWINFFDFYWRMGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLMLA 126 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 127 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGSSIFLLI 186 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 187 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGE 246 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 247 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 306 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 307 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 366 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGFI E +V + + + Sbjct: 367 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFIAELIVFFGIITSQKYFLIFKILIIF 426 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 427 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILIPIIGIGIYP 485 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 486 DFVLSLASDKVESILSNY 503 >gi|329962491|ref|ZP_08300491.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides fluxus YIT 12057] gi|328530047|gb|EGF56935.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacteroides fluxus YIT 12057] Length = 490 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 225/399 (56%), Gaps = 7/399 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L+ + +SW+ +Q +EY + F L V G F+S D+ Sbjct: 77 YSVGVDGISVAMLLLSAIIVFTGTFASWR-LQPLTKEYFLWFTFLSIGVFGFFISTDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSI 194 ++F+E +LIPM+++IGVWG + Y+A K L GS F+L I+ + + T ++ Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYSAMKLTLMLMGGSAFLLIGILGIYYGSGATTMNL 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ + P Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 LEIAQLHNIPVEQQRIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 255 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A+Q + L+ I+++Y + + VQTD+K + AYSS++H G V Sbjct: 256 GGYGCFRIAMYLMPEAAQELGWIFLVLTGISVVYGAFSACVQTDLKYINAYSSVSHCGLV 315 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP AV Sbjct: 316 LFAILMMNQTACTGAVLQMLSHGLMTALFFALIGMIYGRTHTRDVRELSGLMKVMPFLAV 375 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV----AVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGF+ E + FQ+ +T V+A +V++A+Y L L K Sbjct: 376 CYVIAGLANLGLPGLSGFVAEMTIFTGSFQHPDTFHRVWTVIACTSIVITAVYILRLVGK 435 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +++G + L D + ER V + G+ P Sbjct: 436 ILYGTCTNKHHLALTDATWDERTAVIILIACVAALGMAP 474 >gi|290486855|gb|ADD29812.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Ehretia acuminata] Length = 500 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 146/443 (32%), Positives = 252/443 (56%), Gaps = 12/443 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+ + LP +I F + G ++ + + I + F + F Sbjct: 3 DFPWLTTIVVLPIFAGSLIFFLPHRGNRVIRWYTICICILELLLTTYAFCYH-FQSDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E + WI +F + LG+DG+SI ++LT F+T L++ + I + R + L Sbjct: 62 IQLVEDFKWIKFFDFHWRLGIDGLSIGPILLTGFITTLATLAA-RPITRDSRLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLM 180 Query: 181 AIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + ++ +P +++ +I FF +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGISLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S+ Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLVIVGTMQIIYAASTSLGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGIGSITDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ +P+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 361 LDEMGGIAIPLPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYLLMPKILITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFG 434 + + G++L+ +YSL + R++ +G Sbjct: 421 VMAIGMILTPIYSLSMLRQMFYG 443 >gi|77164754|ref|YP_343279.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus oceani ATCC 19707] gi|76883068|gb|ABA57749.1| NADH dehydrogenase subunit M [Nitrosococcus oceani ATCC 19707] Length = 512 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 157/466 (33%), Positives = 255/466 (54%), Gaps = 16/466 (3%) Query: 30 RRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILL 88 + VALG++ + SL + +FD + Q +E + WI Y LGVDG+S+L Sbjct: 12 KHRILSVALGVAVAELLLSLILLGLFDPNQDGMQFVEQHSWIPTLNIDYLLGVDGLSVLF 71 Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 V LT +T IL+S +SI+ Y L LE + IG + +LD+ LF++F+E +L P+ Sbjct: 72 VPLTALITVAVILASRRSIKTLSSLYFALLLFLEGITIGVYCTLDLALFFLFWELTLPPL 131 Query: 149 FVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA-------- 199 F +I +WG G R YAA K+ L+ G I +LF +++ + I A Sbjct: 132 FFLISLWGIGVHRRYAALKYVLFMLTGGILLLFGFILLGLNHANETGIAAPAGLSFNYME 191 Query: 200 --MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 + P + Q +++ F FAIK P+FPFH WLP ++ P + + + G LK+G + Sbjct: 192 LLQTPIPLATQSIVFLLLFFGFAIKAPLFPFHVWLPTMAMEGPASITAIIVG--LKLGLF 249 Query: 258 GCIRFLLPLFP-LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 G IRF +PL P ASQYF ++ L I IY +L+++ QT++++++AYSSI+H G+V I Sbjct: 250 GIIRFAIPLAPQAASQYFV-LMMLLGAIGAIYGALIALKQTNLRRMLAYSSISHAGFVLI 308 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 G + G++GA+FQ+ + G+V+S +F G + RL + ++ A GG MP A + Sbjct: 309 GAAAFNIQGIQGAVFQLFNFGIVASGIFLIAGFLQYRLGSTELTALGGAARPMPILASLF 368 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 + +A++G+PGT+GF E L+++ F+ + + G++LSA Y L Y+K G Sbjct: 369 FILGLASIGVPGTNGFAAEHLIVIGAFKAHIGMGLAVLLGIILSAAYYLVFYQKAFLGPV 428 Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 V++ DL RE + + L + G++P I T L + Sbjct: 429 TRATVKETVDLRSREYWIAGTMVSLALLLGLFPQQILTTTDKTLQA 474 >gi|124111976|ref|YP_001001584.2| NADH-plastoquinone oxidoreductase subunit 4 [Nuphar advena] gi|193806296|sp|A1XG05|NU4C_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|124069864|gb|ABC60509.2| NADH-plastoquinone oxidoreductase subunit 4 [Nuphar advena] Length = 500 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 139/382 (36%), Positives = 231/382 (60%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E ++WI+ F + LG+DG+SI ++LT F+T S+ + + N R + L + Sbjct: 63 QLEEDFNWINLFDFHWRLGIDGLSIGPILLTGFITTLAT-SAARPVTRNSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M ++ ++ +P +++ + F ++A+K P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPKLNFETLANQSYPVALEIIFYFGFLIAYAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S+ Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSLGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ R + Sbjct: 302 KKRIAYSSVSHMGFIIIGISSITDAGLNGAILQIISHGFIGAALFFLAGTSYDRIRLRYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV-------L 412 GG+ MPR + F+MA++ LPG SGF+ E ++ + + + + V + Sbjct: 362 NEMGGIAILMPRIFTMFSSFSMASLALPGMSGFVAELVIFLGIITSPKYLVVSKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMSRQMFYG 443 >gi|193806307|sp|A4QKP5|NU4C_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 162/498 (32%), Positives = 277/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 3 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 61 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++F Y +G+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 62 IQLSEDYKWINFFDFYWRMGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGSSIFLLI 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGFI E +V + + + Sbjct: 361 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFIAELIVFFGIITSQKYFLIFKILIIF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 421 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILIPIIGIGIYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 480 DFVLSLASDKVESILSNY 497 >gi|87123952|ref|ZP_01079802.1| NADH dehydrogenase I chain 4 (or M) [Synechococcus sp. RS9917] gi|86168521|gb|EAQ69778.1| NADH dehydrogenase I chain 4 (or M) [Synechococcus sp. RS9917] Length = 501 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 162/438 (36%), Positives = 253/438 (57%), Gaps = 15/438 (3%) Query: 6 LSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 L+++ +PF G +I L+ S G F +AL + T + L V F G + Q+ Sbjct: 3 LTLLLLIPFAGALLISLWPS--GADGPVFRRLALVLLTAQCLLGLPVLWAFQPGEAGLQL 60 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKS--IQENFREYMIAFLVL 121 IE W+ Y L +DG+S+ LV++ L C ++++ S ++ R Y L++ Sbjct: 61 IERMPWLPSLGLDYALAIDGLSLPLVLMNGLL---CFVAAFTSRRVENRPRIYFALLLII 117 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 V GAFL+ ++LLF++F+E LIP++++I VWGG+ R YA+ KF + T + +L A Sbjct: 118 SGAVNGAFLAQNLLLFFLFYELELIPLWLLIAVWGGANRAYASTKFLIVTAVSGVLILAA 177 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + M S+ L+ + + Q + A FAIKIP+FPFHTWLP+AH +A Sbjct: 178 FLGMA-VLTGSADFSLHPVLGTDMGLLSQLVLMGALLIGFAIKIPLFPFHTWLPDAHTEA 236 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 T SV LAG++LK+G YG +RF L LFP A AP + + ++++Y SL ++ QTD+ Sbjct: 237 STPVSVLLAGVLLKLGTYGLLRFCLGLFPEAWAVAAPWLAIWAAVSVLYGSLAAIAQTDM 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+++AYSS+ HMGYV + + + GA+FQM+SHGL+S+ LF VGV+Y+R TRD+ Sbjct: 297 KRMVAYSSVGHMGYVLLAAAAATPVALVGAVFQMVSHGLISAILFLVVGVVYERTGTRDL 356 Query: 360 FAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 GL++ +P +M+V MA+ G+PG +GFI EFL+ + +L+ G Sbjct: 357 NVLRGLLNPQRGLPLSGTLMIVGVMASAGIPGMAGFISEFLIFRGSLPSFTVATLLSMVG 416 Query: 417 VVLSALYSLWLYRKVVFG 434 L+A+Y L L + FG Sbjct: 417 SGLTAVYFLLLVNRAFFG 434 >gi|259019184|ref|YP_003204901.1| NADH dehydrogenase subunit 4 [Millerozyma farinosa] gi|257143745|emb|CAY39271.1| NADH dehydrogenase, subunit 4 [Millerozyma farinosa] Length = 435 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 137/399 (34%), Positives = 237/399 (59%), Gaps = 15/399 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFF 141 DGI+ + ++LT ++ P I+S+W ++ N + Y L L M++ F+ DM FY++F Sbjct: 30 DGIADIFMLLTMYILPLSIISNWNNM--NNKLYYELVLNLGMMLLMNFMCQDMTSFYMYF 87 Query: 142 EASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI-----VVMCWEKKTSSIID 196 EA+LIP+F+IIG++G + + A +YT F S+FML AI ++ + +++S++ Sbjct: 88 EAALIPLFIIIGLYGAANKDKAVDYMLIYTLFSSLFMLLAIGTYEMLIDNTDYQSTSLLV 147 Query: 197 LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 L +Q ++IA A+K PM PFHTWLP H ++P AGS+ LAG++ K+ Sbjct: 148 L------SIDLQCILFIAMSLGMAVKTPMAPFHTWLPVVHSESPLAGSMLLAGMITKLAV 201 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 Y +R ++P AS + P ++ L ++ ++Y S++++ QTD+K ++AYSS++HM + Sbjct: 202 YAIMRLIMPTLSDASVLYTPFVYVLCVMTVMYTSMMTLRQTDLKVMMAYSSMSHMAMCML 261 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 G+ S +G+ G++ ++HG VS LF V G++YDR H R ++ Y GL+ MP ++ Sbjct: 262 GMLSNSLTGMMGSLVLCMAHGFVSPGLFMMVGGMLYDRYHNRLVYYYQGLMSYMPYLSMY 321 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 ++ + +NMG P + F+GE L + S + +A+F V+LSA Y L L ++ GV Sbjct: 322 TLMLSFSNMGTPLSVNFMGELLSMTGALNKSPYLGFMAAFSVLLSACYQLKLTNRLTGGV 381 Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 K ++ D + RE ++ + V T+FFG++P + D Sbjct: 382 -KTPYMKLTSDCTNRETMLMMSLMVPTLFFGVFPNYMMD 419 >gi|256390063|ref|YP_003111627.1| proton-translocating NADH-quinone oxidoreductase, chain M [Catenulispora acidiphila DSM 44928] gi|256356289|gb|ACU69786.1| proton-translocating NADH-quinone oxidoreductase, chain M [Catenulispora acidiphila DSM 44928] Length = 504 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/423 (36%), Positives = 235/423 (55%), Gaps = 19/423 (4%) Query: 54 VFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE--N 110 VF ++ +Q ++WI +HLGVDGIS+ L++LT L+ C S + + + + Sbjct: 52 VFKYSKTGYQGTVDWNWISALHIRFHLGVDGISLPLILLTALLSALCFFYSIRHMPDGGS 111 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 R Y L+LE ++G F++ D++LF++FFE L+PM+ +I WG AA KF LY Sbjct: 112 QRSYTALLLLLEIGMLGTFMAADLILFFVFFEIVLLPMWALIAYWGSENAKAAANKFILY 171 Query: 171 TFFGSIFML--FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS M+ F +V + + + +A P + FA+K PMFP Sbjct: 172 TLLGSAVMVVGFLVVFAYADSFDMAWLTAHARGDIPKGAALTAFALIALGFAVKTPMFPL 231 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 HTWLP+AH APT GSV LAG++LKMG YG +R +P+ P A+ +AP + ++ +IY Sbjct: 232 HTWLPDAHTAAPTTGSVLLAGVLLKMGTYGFVRIAVPILPQAAPTYAPALAAFGVVGVIY 291 Query: 289 ASLVSMV-----QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 SL + D+K+LIAYSSI HMG+V +GI S G+ A+F ++HGL++ L Sbjct: 292 GSLACLSIARKPDGDLKRLIAYSSIGHMGFVLLGIGSLTTVGMNAALFASVAHGLITGLL 351 Query: 344 FFCVGVIYDRLHTRDIFAYG-GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS- 401 FF VG + R+H+ + G L P+Y V++ MA++GLPG +GF GE L + S Sbjct: 352 FFLVGGLKVRVHSAKLDDIGRALYRRAPKYGVLIAFAAMASLGLPGLAGFWGEVLALFSA 411 Query: 402 ------VFQNSN-TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 + Q+S +A +A+ G+VL+A Y L + R+V G + + + +L+ E Sbjct: 412 TKPGIGLTQSSYIAMAAVAALGLVLTATYLLAVVRRVCMGPAATPSEEPVTELTAVETAT 471 Query: 455 VYP 457 P Sbjct: 472 WTP 474 >gi|169794122|ref|YP_001718486.1| NADH dehydrogenase subunit 4 [Manihot esculenta] gi|193806246|sp|B1NWJ9|NU4C_MANES RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|157695934|gb|ABV66203.1| NADH-plastoquinone oxidoreductase subunit 4 [Manihot esculenta] Length = 500 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 147/436 (33%), Positives = 242/436 (55%), Gaps = 12/436 (2%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI +F Y LG+DG S+ ++LT F+T L++ + I + R + L + Sbjct: 63 QLTEDYKWIQFFDFYWRLGIDGFSLGPILLTGFITTLATLAA-RPITRDSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 122 YSGQIGLFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + A +P +++ + +I F +FA+K P+ P HTWLP+ H +A Sbjct: 182 ALGIALYGSNEPRFHFETSANQSYPVALEIFFYIGFLIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + ++ IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLIIVGVMQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGICSISDMGLNGAILQIISHGFIGAALFFLAGTGYDRIRRVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV---AVLASF- 415 GG+ +MP+ + ++A++ LPG SGF E +V + + +L +F Sbjct: 362 DEMGGMATSMPKIFTTFSILSLASLALPGMSGFFAELIVFFGIITGQKYLLMSKILITFV 421 Query: 416 ---GVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 G++L+ +Y L + R++ +G D RE + I + + G YP Sbjct: 422 MAVGMILTPIYLLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVSISILLPVIGIGFYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 482 VFSLSVDRVEAILSNY 497 >gi|326909440|ref|YP_004327711.1| NADH dehydrogenase subunit 4 [Hevea brasiliensis] gi|308523554|gb|ADO33604.1| NADH dehydrogenase subunit 4 [Hevea brasiliensis] Length = 500 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 151/456 (33%), Positives = 250/456 (54%), Gaps = 16/456 (3%) Query: 43 INFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCIL 101 +N++FS + F Q+ E Y WI +F Y LG+DG S+ ++LT F+T L Sbjct: 47 MNYVFSYY----FQLDDPLIQLTEDYKWIQFFDFYWRLGIDGFSLGPILLTGFITTLATL 102 Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI 161 ++ + I + R + L + S IG F S D+LLF+I +E LIP+++++ +WGG +R+ Sbjct: 103 AA-RPITRDSRLFHFLMLAMYSGQIGLFSSQDLLLFFIMWELELIPVYLLLSMWGGKKRL 161 Query: 162 YAAYKFFLYTFFGSIFMLFAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF 219 Y+A KF LYT GS+F+L + + + + A +P +++ + +I F +F Sbjct: 162 YSATKFILYTAGGSVFLLMGALGIALYGSNEPRFHFETSANQSYPVALEIFFYIGFLIAF 221 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 A+K P+ P HTWLP+ H +A + + LAGI+LKMG YG +R + L A F+P + Sbjct: 222 AVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLVRINMELLSHAHSIFSPWLI 281 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 + ++ IIYA+ S Q ++KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + Sbjct: 282 IVGVMQIIYAASTSPGQRNLKKRIAYSSVSHMGFIIIGICSISDMGLNGAILQIISHGFI 341 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 +ALFF G YDR+ + GG+ +MP+ + ++A++ LPG SGF E +V Sbjct: 342 GAALFFLAGTGYDRIRRVYLDEMGGMATSMPKIFTTFSILSLASLALPGMSGFFAELIVF 401 Query: 400 MSVFQNSNTV---AVLASF----GVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRE 451 + + +L +F G++L+ +Y L + R++ +G D RE Sbjct: 402 FGIITGQKYLLMSKILITFVMAVGMILTPIYLLSMLRQMFYGYKLFNAPNSSFFDSGPRE 461 Query: 452 RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 + I + + GIYP + + +I+ NY Sbjct: 462 LFVSISILLPVIGIGIYPDFVFSLSVDRVEAILSNY 497 >gi|319901158|ref|YP_004160886.1| NADH dehydrogenase subunit M [Bacteroides helcogenes P 36-108] gi|319416189|gb|ADV43300.1| NADH dehydrogenase subunit M [Bacteroides helcogenes P 36-108] Length = 492 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 139/399 (34%), Positives = 225/399 (56%), Gaps = 7/399 (1%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L+ + +SW+ +Q +EY + F L V G F+S D+ Sbjct: 77 YSVGVDGISVAMLLLSAVIVFTGTFASWR-LQPLTKEYFLWFTFLSVGVFGFFISTDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSI 194 ++F+E +LIPM+++IGVWG + Y+A K L GS F+L I+ + + +T ++ Sbjct: 136 MFMFYEVALIPMYLLIGVWGSGRKEYSAMKLTLMLMGGSAFLLIGILGIYYGSGAQTMNL 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ + P Q + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 LEIAELHNIPIEQQRIWFPLTFLGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 255 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A+Q + L+ I+++Y + + VQTD+K + AYSS++H G V Sbjct: 256 GGYGCFRIAMYLMPEAAQELGWIFLILTGISVVYGAFSACVQTDLKYINAYSSVSHCGLV 315 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I ++ GA+ QMLSHGL+++ F +G+IY R HTRD+ GL+ MP AV Sbjct: 316 LFAILMMNRTACTGAVLQMLSHGLMTALFFALIGMIYGRTHTRDVRELSGLMKIMPFLAV 375 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYRK 430 ++ +AN+GLPG SGF+ E + FQ+ + V+A +V++A+Y L L K Sbjct: 376 CYVIAGLANLGLPGLSGFVAEMTIFNGSFQHPDMFHRAWTVIACTSIVITAVYILRLVGK 435 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +++G + L D + ER V + G+ P Sbjct: 436 ILYGTCTNKHHLTLTDATWDERTAVIILIACVAALGLAP 474 >gi|119493769|ref|ZP_01624338.1| NADH dehydrogenase subunit M [Lyngbya sp. PCC 8106] gi|119452464|gb|EAW33651.1| NADH dehydrogenase subunit M [Lyngbya sp. PCC 8106] Length = 499 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 156/450 (34%), Positives = 249/450 (55%), Gaps = 19/450 (4%) Query: 31 RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLV 89 R VAL I F+L + + FD +FQ EY WI SY LGVDG+S+ L+ Sbjct: 26 RQVRSVALIIVISILGFTLKLATDFDLTDPNFQFSEYLDWIPQLGLSYSLGVDGLSLPLM 85 Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 L LT I S+ + E R Y L++ + + GAFL+ ++LLF +F+E LIP++ Sbjct: 86 GLNAVLTIIAIASTRPEL-ERPRLYYSLILLVNAGIAGAFLAQNLLLFVLFYELELIPLY 144 Query: 150 VIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS----IIDLYAMSKFPF 205 ++I +WG +R YAA KF +YT I +L + + W + + I+ ++S+ Sbjct: 145 LLIAIWGSEKRGYAATKFLIYTALSGILILAGFLGITWLSGSINFDYNAINTQSLSQ--- 201 Query: 206 SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 + Q + F IKIP+ P HTWLP+A+V++ ++ L GI+ K+G YG IRF L Sbjct: 202 TNQLILLTVLLIGFGIKIPLVPLHTWLPDAYVESSAPVTILLGGILAKLGTYGLIRFGLQ 261 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 LFP + AP + + + +++Y +L ++ Q DIK+++AYSSI HMGY+ + +G Sbjct: 262 LFPETWELIAPGLSIIGVFSVMYGALTAISQQDIKRMVAYSSIGHMGYIIVAAAAGTSIS 321 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL---VHNMPRYAVVMMVFTMA 382 + GA+ QM++HGL+ + LF VGV+ ++ TRD+ GL + +P + ++++ MA Sbjct: 322 LIGAISQMVAHGLILAILFHLVGVVEAKVGTRDLQVLNGLMNPIRGLPLVSALLIMSGMA 381 Query: 383 NMGLPGTSGFIGEFLVIM---SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 + G+PG GF+ EFLV SVF + ++AS L+A+Y + L + FG E Sbjct: 382 SAGIPGLVGFVAEFLVFQGTFSVFPIQCLICIIASG---LTAVYFVILLNRTCFGKLNNE 438 Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K + L E+ +A L +F G+ P Sbjct: 439 LAYYPK-VKLSEQAPALVLAALILFLGVQP 467 >gi|91984043|ref|YP_567128.1| NADH dehydrogenase subunit 4 [Vitis vinifera] gi|122236490|sp|Q0ZIW8|NU4C_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|91701701|gb|ABE47585.1| NADH-plastoquinone oxidoreductase subunit 4 [Vitis vinifera] Length = 500 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/418 (35%), Positives = 244/418 (58%), Gaps = 12/418 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFDWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLLG 181 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ A +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETSANQSYPVALEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLVVVGTMQIIYAASTSSGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFLGAALFFLAGTSYDRIRLIYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 362 DEMGGIAIPMPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYSLSMSRQMFYGYKLFNAPNSYFFDSGPRELFVLISIFLPVIGIGIYP 479 >gi|304390110|ref|ZP_07372064.1| NADH-quinone oxidoreductase subunit M [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326592|gb|EFL93836.1| NADH-quinone oxidoreductase subunit M [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 530 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/447 (32%), Positives = 253/447 (56%), Gaps = 12/447 (2%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE--NFREYMI 116 +FQ+ E Y W+ S+ LGV+G+ +++++L T LTP IL+SW+ + Y Sbjct: 74 GAFQLGESYAWMPAIGLSWALGVNGLGMVMIILATALTPLVILASWRDDNDPNTAAGYAA 133 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE---RIYAAYKFFLYTFF 173 L LES ++ F + D+LLFYI FE L+P++ ++G +G + R +AA KF LY+ Sbjct: 134 LILALESFMVLLFCARDLLLFYIAFEGMLVPLYFLVGRYGNGDAQVRRHAAIKFVLYSLV 193 Query: 174 GSIFMLFAIV---VMCWEKKTSSIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFH 229 G + MLF I+ V + +D F P + WM + F +FAIK PM P H Sbjct: 194 GGLVMLFGIIGVYVHSGGGDQAFHMDYLTSGNFHPGAAGVWMMMTFLVAFAIKAPMVPVH 253 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+ A SV L G++ K+G +G I F LFP AS APVI L++++I++ Sbjct: 254 TWLPSTAAVARGGTSVLLVGVLDKVGTWGMIMFCWQLFPAASAKVAPVIVVLAVLSILWG 313 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 +L ++ Q D+ +L++++S++H G++ + ++ G ++ +EGAM M++HG+ + LF G Sbjct: 314 ALAAISQKDLLRLVSFTSVSHFGFMVLALYIGSQTAIEGAMLYMVAHGVSIAGLFLLSGW 373 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + R T++I AY G P A + +V +A + LPG SGF+ E+L+++ F+ + Sbjct: 374 LTTRGGTQEIAAYRGFQRVTPTLAGLFLVSGLAAIALPGLSGFLPEYLILVGTFKLNIAA 433 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A+++ GVVL+++Y L Y + G V+ KDL+ RE+ ++ P+ + G+ P Sbjct: 434 AMVSILGVVLASVYLLVPYLNMFTGPID-GAVRTAKDLNWREKFIMVPLVLAMFGLGVLP 492 Query: 470 VPIRDTFSVPLSSIIENYTLKTGYSDS 496 P + P ++++ ++G + + Sbjct: 493 GPTLNLIK-PDAALMYQAVSQSGSASA 518 >gi|197107588|gb|ACH42374.1| NADH dehydrogenase subunit 4 [Nemoderma tingitanum] Length = 246 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 129/243 (53%), Positives = 172/243 (70%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 V+LTT + C+L+SW + + + Y+I+FL +E +++ F +LD+L FYIFFEA LIPM Sbjct: 4 VLLTTLIFLLCLLASWSFDKRDVKMYLISFLSMELILLLVFTNLDLLFFYIFFEAVLIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IGV+G +R + AAY FFLYT GS+FML +V M T++ L +F Sbjct: 64 FLVIGVYGSRQRKVRAAYMFFLYTLVGSLFMLIGVVYMYLFAGTTNYEAL-LFVEFSQYD 122 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L L Sbjct: 123 QKWLWLAFFASFAAKVPMMPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLL 182 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 PLAS YF P IF LS+ I+Y SL ++ QTD+K+LIAY+S+AHM VTIG+FSG G+E Sbjct: 183 PLASLYFTPFIFSLSVFGIVYTSLTAIRQTDLKRLIAYTSVAHMNLVTIGLFSGTVIGIE 242 Query: 328 GAM 330 A+ Sbjct: 243 AAI 245 >gi|163744625|ref|ZP_02151985.1| proton-translocating NADH-quinone oxidoreductase, chain M [Oceanibulbus indolifex HEL-45] gi|161381443|gb|EDQ05852.1| proton-translocating NADH-quinone oxidoreductase, chain M [Oceanibulbus indolifex HEL-45] Length = 495 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 173/503 (34%), Positives = 270/503 (53%), Gaps = 31/503 (6%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS--FQ 63 L++ +P LG + LG VA ST++F+ L VW FD ++ FQ Sbjct: 2 LTLTILIPMLGALALTVLPSLGHAAARIIAVA--TSTLSFLLLLIVWYQFDTSSAAPAFQ 59 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAFLVL 121 WI + +GVDG+S+ L +++ L CI +W E R Y FL L Sbjct: 60 AYAEAPWIPALGVFWRVGVDGMSLALSLMSGVLFIACI--AWPMENPERPRAYYAWFLFL 117 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 ES+ +G F+ LD+L+FY+FF+ SL+ MF +IG WG + AA KFF+YT GS+ +L A Sbjct: 118 ESVSLGLFMVLDLLIFYVFFDLSLVGMFFLIGRWGHGDAQGAALKFFIYTLAGSLAILLA 177 Query: 182 IV--VMCWEKKT---SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 I+ V+ + T ++I +++ + + F FA+K P+FP HTWLP AH Sbjct: 178 IIGLVLTVDPITFDMRALIAAQPLAEMDLRGGL-ILLGFVLGFAVKAPLFPVHTWLPPAH 236 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA---IIYASLVS 293 V AP S LAG++LKMG YG +R +P F + + FA L+++A I++ ++V+ Sbjct: 237 VMAPGPVSAILAGVLLKMGTYGLVR--IP-FQMMRETFADYALPLAIVALASILWGAIVA 293 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIF----------SGMKSGVEGAMFQMLSHGLVSSAL 343 + QTD+K+ IAY+S+ HMGY +GI + + GA+ +M++HGL++ AL Sbjct: 294 LGQTDLKRRIAYTSVNHMGYTVLGIAAAGALLNGAEGAREMALTGAVVEMVAHGLITGAL 353 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 F G + R T D+ AYGGL PR V ++ A++GLPG +GF+ E + + F Sbjct: 354 FLIAGGFWARSGTYDMDAYGGLAKVAPRLTVAAVIAAFASLGLPGLAGFVAEVQIFVGTF 413 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 +A + G++++A L L ++V FG + + D+SLRE ++ I L + Sbjct: 414 AVFPVIAAIGLLGILITAALFLRLLQQVFFG-DLPKAREGFADVSLREGSILAAILALVI 472 Query: 464 FFGIYPVPIRDTFSVPLSSIIEN 486 GIYP + D S+II + Sbjct: 473 LIGIYPRWLLDLIGSASSAIIGS 495 >gi|282860770|ref|ZP_06269836.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces sp. ACTE] gi|282564506|gb|EFB70042.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces sp. ACTE] Length = 537 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 173/515 (33%), Positives = 263/515 (51%), Gaps = 49/515 (9%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVAL--GISTINFIF--SLFVWSVFDKGR- 59 L+ V P LG L + G ++ L G++ + +L + + FD Sbjct: 4 LLAFVVAAPLLGAVAALLPAPPGLKGKNPDQAVLRHGVTVTGVVLFAALVLVAGFDHDHP 63 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMI 116 S+ Q WI HLG DGIS+ L+VLT LT C L S+ + + + ++ Sbjct: 64 SNMQATTDISWIPALDVRIHLGTDGISLPLLVLTALLTFLCALYSYYKLPAGPSAKGFVA 123 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LVLES + F LD++LF++ FE LIPM+ +I WGG R AA+KF LYT GS+ Sbjct: 124 LVLVLESGTLATFAVLDLMLFFLAFEMVLIPMYFLIARWGGEGRQPAAWKFVLYTLLGSV 183 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 ML ++++ + T ++ L + S+Q +A A+K PM+P H+WLP+ Sbjct: 184 VMLLGLLLVGLKSGTFDMVALATDNGRGLTTSVQVIAVLAIGVGLAVKTPMWPLHSWLPD 243 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH APT GSV LAG++LKMG YG +R LLP+ P + FAP + +++ I+Y SL + Sbjct: 244 AHTAAPTVGSVLLAGVLLKMGTYGFVRILLPVAPDGMRTFAPYLAAFAVVGIVYGSLACL 303 Query: 295 ------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ LFF VG Sbjct: 304 ALARPGAKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGLLFFLVG 363 Query: 349 VIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 + DR T D+ G L PR ++ +A++GLPG +GF GE L + F Sbjct: 364 AVKDRYGTADLDTLSGATGAALYGRAPRLGGLLAFAAVASLGLPGLAGFWGEMLTLFGAF 423 Query: 404 QNSNTVAVLA--------SFGVVLSALYSLWLYRKVVFGVSKC------EKVQQLKDLSL 449 ++ ++ A +FG +L+A Y L + R+V G + E + D Sbjct: 424 DPADGLSRPAFLTFMSIGAFGTLLTAAYMLIVVRRVCMGDPRAVAGDRDESLPAAADGPG 483 Query: 450 RERCMVYPI--------------AVLTVFFGIYPV 470 R +P+ A LTV G++P Sbjct: 484 RGGPAPHPVADVQGYEFAAWTPLAALTVLAGLWPA 518 >gi|16330026|ref|NP_440754.1| NAD(P)H-quinone oxidoreductase subunit M [Synechocystis sp. PCC 6803] gi|1652513|dbj|BAA17434.1| NADH dehydrogenase subunit 4 [Synechocystis sp. PCC 6803] Length = 502 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 248/472 (52%), Gaps = 14/472 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ LP +G +I F + + + + ++SL V FD FQ Sbjct: 2 LSLLLILPVIGALIIGFFPG-NIPAKQLRQITEVFAVLTLVWSLLVLFKFDVTDPQFQFQ 60 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 EY WI +Y L +DG+S+ LV+L LT I S ++ + R Y L++ + Sbjct: 61 EYLPWIPQLGLNYSLAIDGLSLPLVILNNLLTGVAIYSIGPNVNRS-RLYYGLILLINAG 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 + GA L+ ++LLF +F+E LIP +++I +WGG +R YA+ KF LYT F + +L A + Sbjct: 120 ISGALLAQNLLLFIVFYELELIPFYLMIAIWGGEKRGYASMKFLLYTAFSGLLVLAAFLG 179 Query: 185 MCWEKKTSSII-DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M + S + F S Q + I F IKIP+ P HTWLP+A+ +A A Sbjct: 180 MSLLSGSHSFDYNPEITQTFTESAQTILLILILLGFGIKIPLVPLHTWLPDAYTEASPAT 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 ++ L GI+ K+G YG IRF L LFP FAPV+ + + ++Y +L ++ Q DIK+++ Sbjct: 240 AILLGGILAKLGTYGIIRFGLQLFPQTWAQFAPVLAIIGTVTVLYGALSAIAQKDIKRMV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI HMGY+ + +G + V GA+ QM+SHGL+ + LF VG++ + TRD+ Sbjct: 300 AYSSIGHMGYILVAAAAGTELSVLGAVAQMVSHGLILALLFHLVGIVERKAGTRDLDVLN 359 Query: 364 GL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL + +P + +++ MA+ G+PG GF EF+V F +L L+ Sbjct: 360 GLMNPIRGLPLTSALLITGGMASAGIPGLVGFAAEFIVFQGSFPTFPIPTLLCILASGLT 419 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV---FFGIYP 469 A+Y + L + FG ++ K L+ + P VLT F G+ P Sbjct: 420 AVYFVILLNRTCFGKLDNQRAYYPKVLA----SEMIPALVLTAIIFFLGVQP 467 >gi|158518593|sp|Q4VZL8|NU4C_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 157/495 (31%), Positives = 269/495 (54%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+ V P ++ F + G ++ + + + + F + F+ Q Sbjct: 5 PWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYH-FELDDPLIQ 63 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI + Y LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LMEDYKWIPFLDFYWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFYFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F + D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSARDLLLFFIMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGIGLYGSNEPTLNFETSANQSYPIALEILFYIGFLIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + +I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLIIVGIIQIIYAASTSSGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GGL +P+ + +MA++ LPG SGF+ E +V + + + ++ Sbjct: 363 EMGGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKMVITLVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSK-CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +Y L + R++ +G K D RE + I + + GIYP + Sbjct: 423 AIGIILTPIYLLSMLRQMFYGYKLFNAKNSYFFDSGPRELFVAISILIPVIGIGIYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + +I+ NY Sbjct: 483 FSLSVDKVEAILSNY 497 >gi|290958199|ref|YP_003489381.1| NADH dehydrogenase subunit NuoM2 [Streptomyces scabiei 87.22] gi|260647725|emb|CBG70830.1| NADH dehydrogenase subunit NuoM2 [Streptomyces scabiei 87.22] Length = 527 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 162/443 (36%), Positives = 243/443 (54%), Gaps = 27/443 (6%) Query: 55 FDKGR-SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQEN 110 FD + S Q WI HLG+DGIS+ L+VLT L C L S+ + Sbjct: 66 FDHDQPSKMQASTDISWIPALDVRIHLGIDGISLPLLVLTALLAFLCALYSFFKPPTGPS 125 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + ++ LVLES + F LD+LLF++ FE LIPM+ +I WGG +R AA+KF LY Sbjct: 126 PKAFVALVLVLESGTLATFAVLDLLLFFLAFETVLIPMYFLIARWGGEQRTQAAWKFILY 185 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS+ ML ++++ + T ++ L S ++Q ++ A+K PM+P Sbjct: 186 TLLGSVVMLLGLLLIGVKAGTFDMVALATDSHPGLTTTVQVVAALSIGIGLAVKTPMWPL 245 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H+WLP+AH APT GSV LAG++LKMG YG +R LLP+ P + FAP + +++ IIY Sbjct: 246 HSWLPDAHTAAPTVGSVLLAGVLLKMGTYGFVRILLPITPDGFRTFAPYLAAFAVVGIIY 305 Query: 289 ASLVSM------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 SL + + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ Sbjct: 306 GSLACLALAKQGAKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGL 365 Query: 343 LFFCVGVIYDRLHTRDIFAY-----GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 LFF VG + DR T D+ L PR ++ +A++GLPG +GF GE L Sbjct: 366 LFFLVGALKDRTGTTDLDTLARETGAALYGRAPRLGGLLAFAAVASLGLPGLAGFWGEML 425 Query: 398 VIMSVFQNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ--QLKDL 447 + F+ + T +A+FG +L+A Y L + R+V G + + + +L D+ Sbjct: 426 ALFGAFEPAEGLSRPAFLTFMTIAAFGTLLTAAYLLIVVRRVCMGAAPTQPQEGTRLADV 485 Query: 448 SLRERCMVYPIAVLTVFFGIYPV 470 E P+ LTV G++P Sbjct: 486 QPYEFAAWTPLVALTVLAGLWPA 508 >gi|115432850|gb|ABI97463.1| NADH-plastoquinone oxidoreductase subunit 4 [Cucumis sativus] gi|115498352|gb|ABI98794.1| NADH-plastoquinone oxidoreductase subunit 4 [Cucumis sativus] Length = 500 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 157/495 (31%), Positives = 269/495 (54%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+ V P ++ F + G ++ + + + + F + F+ Q Sbjct: 5 PWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYH-FELDDPLIQ 63 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI + Y LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LMEDYKWIPFLDFYWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFYFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F + D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSARDLLLFFIMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGIGLYGSNEPTLNFETSANQSYPIALEILFYIGFLIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + +I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLIIVGIIQIIYAASTSSGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GGL +P+ + +MA++ LPG SGF+ E +V + + + ++ Sbjct: 363 EMGGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKMVITLVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSK-CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +Y L + R++ +G K D RE + I + + GIYP + Sbjct: 423 AIGIILTPIYLLSMLRQMFYGYKLFNAKNSYFFDSGPRELFVAISILIPVIGIGIYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + +I+ NY Sbjct: 483 FSLSVDKVEAILSNY 497 >gi|290486871|gb|ADD29820.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Bulnesia arborea] Length = 500 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 159/479 (33%), Positives = 261/479 (54%), Gaps = 13/479 (2%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+++ P L I F G ++ + + I + F + F Sbjct: 3 DFPWLTLIVVFPILAGSFIFFLPQRGNKTIRWYTICVCILELLLTTYAFCY-YFKLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI +F + LG+DG+SI ++LT F+T L++W I + R + L Sbjct: 62 IQLGEDYQWIPFFDFDWRLGIDGLSIGPILLTGFITTLATLAAWP-ITRDSRFFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGLFSSRDILLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLI 180 Query: 181 AIVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + I++ A +P +++ +I FF +FA+K+P+ P HTWLP+ H + Sbjct: 181 GVLGIGLYGSNQPILNFETSANQSYPIALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSLFSPCLVIIGTLQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ G + Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGIGSINDMGLNGVILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN---TVAVLASF 415 + GG+ +P+ + + +MA++ LPG SGF+ E +V + + +L +F Sbjct: 361 LDEMGGMAIPIPKIFTMFNILSMASLALPGMSGFVSELIVFFGIITSQKYLLMAKILITF 420 Query: 416 ----GVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYP 469 G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 421 VMAIGMILTPIYSLSMLRQMFYGYKLFSTSNSYFFDSGPRELFISISILLPVISIGIYP 479 >gi|42784461|ref|NP_981708.1| NADH dehydrogenase subunit M [Bacillus cereus ATCC 10987] gi|42740393|gb|AAS44316.1| NADH dehydrogenase I, M subunit [Bacillus cereus ATCC 10987] Length = 500 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 158/461 (34%), Positives = 266/461 (57%), Gaps = 27/461 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGI--STINFIFSLFVWSVFDKG 58 MN L+ F P LG+ ++ F+ + S ALG+ + + F ++ + + G Sbjct: 1 MNDLLLTFFIFSPLLGILLLTFTPK----KESRTVRALGLFGTALPFGIAIVLACTYASG 56 Query: 59 RSSFQMIEYYHWIDY--FCS---------YHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 +S E WI + F + Y LG+DG+S++++VLT L ++++ +I Sbjct: 57 KSLSLFDEKVKWITFGDFAAVDKRWFSIYYELGIDGLSLVMMVLTALLAMLAAIAAF-TI 115 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKF 167 + N + + + L+LE ++G F + +++LF+IFFE +L PMF++IG WG AAY + Sbjct: 116 KRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEITLPPMFLLIGKWGKLSSEKAAYSY 175 Query: 168 FLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM---------SKFPFSIQYWMWIAFFCS 218 +Y GS +L V+ + T++I +L + P S+Q+ ++++ + Sbjct: 176 LIYNGIGSAILLIVFSVLFAKTGTTNITELKEILTSVGAGGGMAVPNSLQFGLFLSIMIA 235 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 FAIK+P+FP H W+ N H++A A + AG++LK+G YG IRF LFP + FA +I Sbjct: 236 FAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKIGAYGIIRFGQGLFPEYFREFATLI 295 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 L +I ++Y + ++++QTD +K++AYSSI+HMG V +G+ + G +GA+FQ++SHGL Sbjct: 296 AILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIVLMGLGALNAPGTQGALFQVVSHGL 355 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 +++ LFF +GVI R T DI A GGL ++P + + MA++GLPG SGF+ EFL Sbjct: 356 IAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSGFFLAGGMASLGLPGMSGFVSEFLA 415 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 + +FQ +A G++L+A+Y L +V FG + E Sbjct: 416 FLGLFQGEPVIAAAGVLGIILTAVYVLRATLQVTFGKKEWE 456 >gi|315605116|ref|ZP_07880168.1| NADH-quinone oxidoreductase subunit M [Actinomyces sp. oral taxon 180 str. F0310] gi|315313223|gb|EFU61288.1| NADH-quinone oxidoreductase subunit M [Actinomyces sp. oral taxon 180 str. F0310] Length = 514 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 162/511 (31%), Positives = 280/511 (54%), Gaps = 40/511 (7%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYL--GCGRR-----SFFGVALGISTINFIFSLFVWSV 54 N P+LS++ +P G ++ F L GR + +ALG++ +F WS Sbjct: 5 NFPWLSVLVAVPAAGAALLGFVPPLRRAAGRVLALACALVELALGVAAAVTVFD---WSA 61 Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR- 112 +++Q+ E + WI ++ LGV+ + +++++L L P +++ W + + R Sbjct: 62 ----PATYQVYESHEWIPQMGITWSLGVNALGLVMILLALGLVPLVLIAGWNEEEADDRG 117 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE---RIYAAYKFFL 169 Y L L++ ++ F + D+++FY+ FEA L+P++++IG +G E R AA KF L Sbjct: 118 AYPALVLALQAFMVVIFAAYDLVVFYVAFEAMLVPLYLMIGRYGTGEEAARHRAAMKFLL 177 Query: 170 YTFFGSIFMLFAIVVMCWEKKTSSI--------IDLYAMSKFP---FSIQYWMWIAFFCS 218 Y+ FG + ML I+ + W + + +D A S P S+Q +++ F + Sbjct: 178 YSLFGGLVMLGGILFL-WASASRAADGASTFFRLDTLA-STLPGAASSVQMVVFVTFMVA 235 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 FAIK PM P HTWLP+ A SV L G++ K+G +G I L L P AS + V+ Sbjct: 236 FAIKAPMVPVHTWLPDTAAVARPGTSVLLVGVLDKIGTFGMITLCLQLTPTASSHAKWVM 295 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 L++I+I++ L + Q DI +L++Y+S++H G++ +GIF G + GAMF M++HG+ Sbjct: 296 CVLAVISIVWGGLAANGQNDIMRLVSYTSVSHFGFMVLGIFIGSNLALVGAMFYMVAHGV 355 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 +A+F G + R T+D+ Y G+ P A + +V +A++ LPG SGF+ E+LV Sbjct: 356 SIAAMFLLSGWLARRGGTQDMREYVGMQRVTPVLAGLWLVSGLASIALPGLSGFVPEYLV 415 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 +M + + +A++A GVV++A+Y L Y++V G K ++L DL RER ++ P+ Sbjct: 416 LMGTWTVNAPLALVAVIGVVIAAMYVLMPYQRVFTGAPGKGK-EELVDLGGRERGVMAPL 474 Query: 459 AVLTVFFGIYPV-------PIRDTFSVPLSS 482 V + GI+ P+ D+F P ++ Sbjct: 475 VVAMLVLGIWSAPLVGALTPVADSFGHPATA 505 >gi|77917831|ref|YP_355646.1| NADH dehydrogenase I subunit M [Pelobacter carbinolicus DSM 2380] gi|77543914|gb|ABA87476.1| NADH dehydrogenase subunit M [Pelobacter carbinolicus DSM 2380] Length = 491 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 143/433 (33%), Positives = 255/433 (58%), Gaps = 10/433 (2%) Query: 66 EYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E + WI+ Y + LG+DG+S+L+V LT L I SW+ ++ Y L + Sbjct: 61 EDWPWIERYGARFSLGLDGLSLLMVWLTLILLAVAIGISWQRYRQA--GYYALLLTGGTG 118 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++G FL+ D+LLFY+ +E L+P+ + I +WGG++R+ AA+K ++T GS+ ML A + Sbjct: 119 ILGVFLAQDLLLFYLCWEVMLLPLVLCIFLWGGAQRVQAAFKLLVFTLAGSLLMLLAFLT 178 Query: 185 --MCWEKKTSS---IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + ++T + + P +I W++ +F +K+P+ P H WLP+A+ +A Sbjct: 179 LYILHGRQTGDYSFALQTLTATVVPSAIAPWLFGCLAVAFLVKVPVVPVHGWLPDAYQEA 238 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 PTA ++ L+G++ K G +G +R +PL P Q FAPV+ L L++I Y ++ VQTD+ Sbjct: 239 PTAVTLLLSGVLAKAGIFGLLRVAMPLLPATWQSFAPVLAILGLLSIGYGGWLAFVQTDL 298 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+L+AY+S+AH+G++ +G+ +G ++G++ Q+ +HG+ ++ALF V ++ R +R + Sbjct: 299 KRLVAYASVAHLGFIVVGMAAGNAIALQGSLLQLFNHGVTTAALFVLVALVKRRTTSRQL 358 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GGL P+ + ++F++A +GLPG + F GE L+++ F+ + GV+L Sbjct: 359 PDLGGLWARTPQLGAMFLLFSLATLGLPGLNIFTGEVLILLGAFRAQAWWGAVGMAGVLL 418 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 +A Y+L + + V++GV + + D+ E ++ P+AVL +FG+YP+P S P Sbjct: 419 AACYTLRMVQGVLWGVPRGPD--PMPDMKRGEMALLAPLAVLVFWFGLYPLPFLKLLSGP 476 Query: 480 LSSIIENYTLKTG 492 + I+ K G Sbjct: 477 VEQILVQLATKGG 489 >gi|116075368|ref|ZP_01472628.1| NADH dehydrogenase I chain 4 (or M) [Synechococcus sp. RS9916] gi|116067565|gb|EAU73319.1| NADH dehydrogenase I chain 4 (or M) [Synechococcus sp. RS9916] Length = 502 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 150/387 (38%), Positives = 227/387 (58%), Gaps = 10/387 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 F+ S Q+IE++ W+ Y L VDG+S+ LV++ L L+S K I+ R Sbjct: 51 FNPADSGLQLIEHFAWLPSIGLDYVLAVDGLSMPLVLMNGVLCLVAALASRK-IENRPRI 109 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV+ V GAFL+ ++LLF++F+E LIP++++I +WGG+ R YA+ KF + T Sbjct: 110 YFALLLVISGAVNGAFLAQNLLLFFLFYELELIPLWMLIAIWGGTNRAYASTKFLIVTAV 169 Query: 174 GSIFMLFAIVVMCWEKKTSSI---IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 ML + + S+ ++ P + Q + A F IKIP+FPFHT Sbjct: 170 SG--MLILGAFLGLALLSGSVDFSLNPVLPGALPITTQLLLMGALLIGFGIKIPLFPFHT 227 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH +A T SV LAG++LK+G YG +RF L LFP A AP + + ++++Y S Sbjct: 228 WLPDAHTEASTPVSVLLAGVLLKLGTYGLLRFCLGLFPEAWHLAAPWLAGWAAVSVLYGS 287 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 L ++ QTD+KK++AYSS+ HMGYV + + G+ GA+FQM+SHGL+S+ LF VGV+ Sbjct: 288 LAAIAQTDMKKMVAYSSVGHMGYVLLAAAAATPLGLIGALFQMVSHGLISAILFLVVGVV 347 Query: 351 YDRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 Y+R TRD+ GL++ +P +M++ MA+ G+PG +GFI EFL+ Sbjct: 348 YERTGTRDLNILRGLLNPQRGLPLSGTLMIIGVMASAGIPGMAGFISEFLIFRGSLGPFP 407 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFG 434 +L+ G L+A+Y L L + FG Sbjct: 408 LATLLSMVGSGLTAVYFLLLVNRAFFG 434 >gi|306486033|gb|ADM92664.1| NADH-plastoquinone oxidoreductase subunit 4 [Franklinia alatamaha] Length = 487 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 150/433 (34%), Positives = 249/433 (57%), Gaps = 14/433 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I T+ + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--RGNRVIRWYTICICTLELLLTTYGFCYHFQSDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI +F + LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWIQFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ ++ +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVGLYSSNEPTLNFETLANQSYPVALEILFYIGFFIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGTTQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLAYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV---AVLASF- 415 GG+ MP+ + F++A++ LPG GF+ E +V + + + VL +F Sbjct: 362 DEMGGIAIPMPKIFTMFSSFSIASLALPGMGGFVAELIVFFGIITSQKFLLMPKVLITFV 421 Query: 416 ---GVVLSALYSL 425 G++L+ +YSL Sbjct: 422 MAIGMILTPIYSL 434 >gi|315654709|ref|ZP_07907615.1| NADH-quinone oxidoreductase subunit M [Mobiluncus curtisii ATCC 51333] gi|315491173|gb|EFU80792.1| NADH-quinone oxidoreductase subunit M [Mobiluncus curtisii ATCC 51333] Length = 530 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/447 (32%), Positives = 253/447 (56%), Gaps = 12/447 (2%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE--NFREYMI 116 +FQ+ E Y W+ S+ LGV+G+ +++++L T LTP IL+SW+ + Y Sbjct: 74 GAFQLGESYAWMPAIGLSWALGVNGLGMVMIILATALTPLVILASWRDDTDPNTAAGYAA 133 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE---RIYAAYKFFLYTFF 173 L LES ++ F + D+LLFYI FE L+P++ ++G +G + R +AA KF LY+ Sbjct: 134 LILALESFMVLLFSARDLLLFYIAFEGMLVPLYFLVGRYGNGDAQVRRHAAIKFVLYSLV 193 Query: 174 GSIFMLFAIV---VMCWEKKTSSIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFH 229 G + MLF I+ V + +D F P + WM + F +FAIK PM P H Sbjct: 194 GGLVMLFGIIGVYVHSGGGDQAFHMDYLTSGNFHPGAAGMWMMMTFLVAFAIKAPMVPVH 253 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+ A SV L G++ K+G +G I F LFP AS APVI L++++I++ Sbjct: 254 TWLPSTAAVARGGTSVLLVGVLDKVGTWGMIMFCWQLFPAASAKVAPVIVVLAVLSILWG 313 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 +L ++ Q D+ +L++++S++H G++ + ++ G ++ +EGAM M++HG+ + LF G Sbjct: 314 ALAAISQKDLLRLVSFTSVSHFGFMVLALYIGSQTAIEGAMLYMVAHGVSIAGLFLLSGW 373 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + R T++I AY G P A + +V +A + LPG SGF+ E+L+++ F+ + Sbjct: 374 LTARGGTQEIAAYRGFQRVTPTLAGLFLVSGLAAIALPGLSGFLPEYLILVGTFKLNIAA 433 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A+++ GVVL+++Y L Y + G V+ KDL+ RE+ ++ P+ + G+ P Sbjct: 434 AMVSILGVVLASVYLLVPYLNMFTGPID-GAVRTAKDLNWREKLIMVPLVLAMFGLGVLP 492 Query: 470 VPIRDTFSVPLSSIIENYTLKTGYSDS 496 P + P ++++ ++G + + Sbjct: 493 GPTLNLIK-PDAALMYQAVSQSGVASA 518 >gi|290486883|gb|ADD29826.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Liquidambar styraciflua] Length = 500 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 150/442 (33%), Positives = 253/442 (57%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPHRGNKIIRWYTIC--ICFLELLLTTYAFGYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID+F Y LG+DG+SI ++LT F+T L++ + + + R + L + Sbjct: 63 QLAEDYKWIDFFYFYWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSVFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGVSLYGSNEPTFNFETLANQSYPVALEIIFYIVFLIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRVNMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 362 DEMGGIAIPMPKVFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKILITCV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +YSL + R++ +G Sbjct: 422 MAIGMILTPIYSLSMSRQMFYG 443 >gi|294630841|ref|ZP_06709401.1| NADH-quinone oxidoreductase, M subunit [Streptomyces sp. e14] gi|292834174|gb|EFF92523.1| NADH-quinone oxidoreductase, M subunit [Streptomyces sp. e14] Length = 524 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 162/434 (37%), Positives = 237/434 (54%), Gaps = 25/434 (5%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQENFREYMI 116 S Q WI HLG+DGIS+ LVVLT LT C L S+ + ++ Sbjct: 72 SKMQATTDISWIPALHVRIHLGIDGISLPLVVLTALLTFLCALYSYFKPPAGPGPKAFVA 131 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+LES + F LD+LLF++ FE LIPM+ +I WGG R AA++F LYT GS+ Sbjct: 132 LLLLLESGTLATFAVLDLLLFFLAFETVLIPMYFLIARWGGEGRRAAAWRFILYTLLGSV 191 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 ML ++++ + T ++ L + S+Q IA A+K PM+P H+WLP+ Sbjct: 192 VMLLGLLLIGLKAGTFDMVALATDNGRSLTASVQVIAVIAIGIGLAVKTPMWPLHSWLPD 251 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH APT GSV LAG++LKMG YG +R LLP+ P FAP + ++ I+Y SL + Sbjct: 252 AHTAAPTVGSVLLAGVLLKMGTYGFVRILLPIAPHGFHTFAPYLAAFAVAGIVYGSLACL 311 Query: 295 ------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ LFF VG Sbjct: 312 ALARQGAKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGLLFFLVG 371 Query: 349 VIYDRLHTRDIFAY-----GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 + DR T D+ A L PR ++ +A++GLPG +GF GE L + F Sbjct: 372 ALKDRTGTTDLDALAQESGAALYGKAPRLGGLLAFGAVASLGLPGLAGFWGEMLALFGAF 431 Query: 404 QNSNTVA--------VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + + ++ + +FG +L+A Y L + R+V G +K L D+ E Sbjct: 432 EPAAGLSRPAFLAFMAIGAFGTLLTAAYMLVVVRRVCMGAVP-QKTPSLPDVRGFEFAAW 490 Query: 456 YPIAVLTVFFGIYP 469 P+ VLTV G++P Sbjct: 491 TPLVVLTVLAGLWP 504 >gi|197131440|gb|ACH47238.1| NADH-plastoquinone oxidoreductase subunit 4 [Geranium macrorrhizum] Length = 515 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 154/479 (32%), Positives = 262/479 (54%), Gaps = 17/479 (3%) Query: 4 PFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKGRSS 61 P+L+I+ P G F+ F G + L I ++ + + + + S F Sbjct: 16 PWLTIIVIFPISAGSFIFFFPQR---GNKVIRWYTLCICSLELLLTAYAFCSQFQLDDPL 72 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI + Y LG+DG+S+ ++LT F+T L++W + N R + L Sbjct: 73 IQLVENYKWIHFLQFYWRLGIDGLSLGPILLTGFMTTLATLAAWP-VTRNSRLFYFLMLA 131 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 132 MYSGQIGSFSSRDLLLFFIMWEFELIPVYLLLSLWGGKKRLYSATKFLLYTAVSSLFLLI 191 Query: 181 AIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + + + ++ A +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 192 GVLSIGLFGSNEPTFHFEISAHQSYPAALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGE 251 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + A F+P + + I I+YA+L S+ Q + Sbjct: 252 AHYSTCMLLAGILLKMGAYGLVRINVEFLTHAHSKFSPYLITIGAIQIVYAALTSLGQRN 311 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 312 LKKRIAYSSVSHMGFIIIGISSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVS 371 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ +P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 372 LHEMGGMAVAIPKVFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKIVITF 431 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEK-VQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 432 GMAIGMILTPIYSLSMLRQMFYGYRLLNAPTPPFFDSGPRELFVSISILLPVIGIGIYP 490 >gi|219681540|ref|YP_002467925.1| NADH dehydrogenase I chain M [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471221|ref|ZP_05635220.1| NADH dehydrogenase I chain M [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624383|gb|ACL30538.1| NADH dehydrogenase I chain M [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 505 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 161/490 (32%), Positives = 284/490 (57%), Gaps = 30/490 (6%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ +PFL F FS L + ++ I+T+ + +F F + FQ+ Sbjct: 3 LSLLIIIPFLSSFFSFFSPRLHNNFPRWIALSGIIATLLVVIQIF----FQENYHIFQIR 58 Query: 66 EYYHW--------IDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 Y +W I F +++ +DG+SI++++ ++FL+ I+ SW I++N + Sbjct: 59 HYPNWNYQLIVPWISRFGIEFNIALDGLSIIMLIFSSFLSIIAIICSWNEIKKNEGFFYF 118 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS----ERIYAAYKFFLYTF 172 F+++ + +IG F+S D+ LF+ F+E LIPM+ +I +W + AA KFFLY+ Sbjct: 119 NFMLVFTGIIGVFISCDLFLFFCFWEIMLIPMYFLIALWSDKTEKKKNFLAANKFFLYSQ 178 Query: 173 FGSIFMLFAIVVMCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFP 227 + +L +I+++ + S+ I +L ++Y + I FF SFAIK+P+ P Sbjct: 179 TSGLILLSSILLLVFSHYYSTNILTFNYNLLINKPINIYVEYIVMIGFFLSFAIKMPIVP 238 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 FH WLP+ H ++ + GSV + G++LK Y +R+ L LFP +++ F+ + F +I+I Sbjct: 239 FHGWLPDIHSRSLSCGSVEIIGVLLKTAPYALLRYNLVLFPDSTKSFSLIAVFWGIISIF 298 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 Y + ++ QT+IK+LIAYSS++HMG + IGI+S + ++G + QMLS+ L +AL Sbjct: 299 YGAWIAFSQTNIKRLIAYSSVSHMGLILIGIYSNNERALQGVVIQMLSNSLTVAALCILS 358 Query: 348 GVIYDRLHTRDIFAYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G IY R T+D+ GGL ++ +P ++ + F++AN+G+PGT FIGEFL++ VF+ Sbjct: 359 GQIYKRFKTQDMTKMGGLWSCIYWIPGFS---LFFSLANLGVPGTGNFIGEFLILSGVFE 415 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 V++LA+ G+V S++YSL + +K+ +G C++ ++ ++ +E + + VF Sbjct: 416 VFPLVSILATIGIVFSSIYSLNVIQKIFYG--PCKQNIKVFFINKQEVWTIIALVFTLVF 473 Query: 465 FGIYPVPIRD 474 G+ P I D Sbjct: 474 LGLNPQKIID 483 >gi|197107572|gb|ACH42366.1| NADH dehydrogenase subunit 4 [Cutleria multifida] Length = 246 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 125/243 (51%), Positives = 175/243 (72%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 ++LTT + P C+L+SW + + Y+I+FL +E +++ F +LD+L FYIFFEA LIPM Sbjct: 4 ILLTTMIFPLCLLASWSFDKGGVKMYLISFLSMELVLLLVFTNLDLLFFYIFFEAVLIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG++G +R I AAY FFLYT GS+FML +V + +++ L A++ P+ Sbjct: 64 FLVIGIYGSRQRKIRAAYMFFLYTLLGSLFMLVGVVYIYLFAGSTNYEVLSAVAFSPYD- 122 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 123 QRWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 182 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P AS YF P+IF LS+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G G+E Sbjct: 183 PEASVYFTPLIFSLSVFGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGIE 242 Query: 328 GAM 330 A+ Sbjct: 243 AAI 245 >gi|196039606|ref|ZP_03106911.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus NVH0597-99] gi|196029766|gb|EDX68368.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus NVH0597-99] Length = 500 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 150/425 (35%), Positives = 250/425 (58%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + GR E WI + F + Y LG+DG Sbjct: 33 ALGLFGTVLPFGMAIVLACTYASGRDLSLFNEKVKWIKFGDFAAVDKRWFSIYYELGIDG 92 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + LVLE ++G F + +++LF+IFFE Sbjct: 93 LSLVMMVLTALLAILAAIAAF-TIKRNLKAFYMLLLVLEIGMLGVFAAQNLMLFFIFFEI 151 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK- 202 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 152 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILAS 211 Query: 203 --------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 212 VGAGGGMVVPSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 271 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QT+ +K++AYSSI+HMG V Sbjct: 272 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTNFRKVLAYSSISHMGIV 331 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++P + Sbjct: 332 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSG 391 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 392 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAAGVLGIILTAVYVLRATLQVTFG 451 Query: 435 VSKCE 439 + E Sbjct: 452 KKEWE 456 >gi|188581797|ref|YP_001925242.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacterium populi BJ001] gi|179345295|gb|ACB80707.1| proton-translocating NADH-quinone oxidoreductase, chain M [Methylobacterium populi BJ001] Length = 492 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 174/482 (36%), Positives = 269/482 (55%), Gaps = 27/482 (5%) Query: 6 LSIVTFLPFL-GVFVILFSSYL-GCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 L+ LP L G+ V+ + G RR VAL S + ++ +W+ FD G Q Sbjct: 2 LTATILLPLLTGLAVLALPRHRPGLVRR----VALAGSVLTLGAAVVLWAGFDPGAGGLQ 57 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL--V 120 WI SY +GV G+S+ L++LT L ++ + E+ R + AFL + Sbjct: 58 WRMTLPWIPSLGASYDVGVGGLSLALILLTAILLTVVMV---YVLGEHDRAHAHAFLFLL 114 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML- 179 L + +IG F + D+LLFY+FFE L+PM+ I+G+WGG R YAA KFFLYT GS+ ML Sbjct: 115 LATGLIGLFAAQDLLLFYLFFEVGLVPMYFIVGIWGGERRRYAALKFFLYTRAGSLAMLL 174 Query: 180 -FAIVVMCWEKKT---SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 F + + E T +I+ + + P + +++A F +K+P+ P H WLP+A Sbjct: 175 GFLTLYLAMEPHTFSLPAIVQARPLDRTPLA-GGLVFLALLLGFGVKLPVVPLHNWLPDA 233 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+APT GSV LAG+ LKMGGYG + LLP P F ++ L+L +++Y +L ++ Sbjct: 234 HVEAPTEGSVVLAGLQLKMGGYGMLAVLLPTLPDTVARFGWLLVALALASLLYGALAALA 293 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE--------GAMFQMLSHGLVSSALFFCV 347 QTD+K+L+AY+S+ HMG+VT+G+ +G E GA QM+SHG ++ +F V Sbjct: 294 QTDMKRLVAYTSVNHMGFVTLGVAVAALAGNEGVRRLALNGAAVQMVSHGFLTGGMFLLV 353 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 G++ R TR++ +GGL+ +MP ++ + + ++GLPG SGFI EF I + Q S Sbjct: 354 GMLQHRAGTRELARFGGLIGSMPAFSGLFGLLAFGSLGLPGLSGFIAEFQAIGAALQLSA 413 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 VA LA +V++ L L ++ G + + + L L+ E +AVL + G+ Sbjct: 414 WVAALAVLALVVTTAVYLRLVTGLLMGRAPPD-MPALPPLTAAEAGSAGALAVLALGLGV 472 Query: 468 YP 469 P Sbjct: 473 LP 474 >gi|134286716|dbj|BAF50339.1| NADH dehydrogenase ND4 [Crucihimalaya wallichii] Length = 506 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 161/499 (32%), Positives = 278/499 (55%), Gaps = 17/499 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ +++ I + F ++ F Sbjct: 9 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTISICILELLLTTYAFCYN-FKMDDPL 67 Query: 62 FQMIEYYHWIDYFCSYH--LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E Y WI+ FC ++ +G+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 68 IQLSEDYKWIN-FCDFYWRMGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLML 125 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG+F S D+LLF+I +E LIP++ ++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 126 AMYSGQIGSFSSRDLLLFFIMWELELIPVYHLLSMWGGKKRLYSATKFILYTAGSSIFLL 185 Query: 180 FAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H Sbjct: 186 IGVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHG 245 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q Sbjct: 246 EAHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQR 305 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 306 NLKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLV 365 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV------ 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 366 YLDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFVISKIFII 425 Query: 412 -LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIY 468 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIY Sbjct: 426 FVMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIY 484 Query: 469 PVPIRDTFSVPLSSIIENY 487 P + S + SI+ NY Sbjct: 485 PDFVLSLASDKVESILSNY 503 >gi|197107604|gb|ACH42382.1| NADH dehydrogenase subunit 4 [Saccorhiza dermatodea] Length = 245 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 126/243 (51%), Positives = 172/243 (70%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 ++LTT + P C+L+SW + + Y+I FL +E +++ F +LD+L FYIFFEA LIPM Sbjct: 3 ILLTTLIFPLCLLASWSFDKGEVKTYLICFLSMELVLLLVFTNLDLLFFYIFFEAVLIPM 62 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG++G +R I AAY FFLYT GS+FML VV + S+ + ++ F + Sbjct: 63 FLVIGIYGSRQRKIRAAYMFFLYTLLGSLFMLVG-VVYIYLFAGSTNYEALSVIGFSYYD 121 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 122 QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 181 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 PLAS YF P IF LS+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G G+E Sbjct: 182 PLASVYFTPFIFSLSIFGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGIE 241 Query: 328 GAM 330 A+ Sbjct: 242 AAI 244 >gi|154362199|ref|YP_001123514.2| NADH dehydrogenase subunit 4 [Crucihimalaya wallichii] Length = 501 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 161/499 (32%), Positives = 278/499 (55%), Gaps = 17/499 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ +++ I + F ++ F Sbjct: 4 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTISICILELLLTTYAFCYN-FKMDDPL 62 Query: 62 FQMIEYYHWIDYFCSYH--LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E Y WI+ FC ++ +G+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 63 IQLSEDYKWIN-FCDFYWRMGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLML 120 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG+F S D+LLF+I +E LIP++ ++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 121 AMYSGQIGSFSSRDLLLFFIMWELELIPVYHLLSMWGGKKRLYSATKFILYTAGSSIFLL 180 Query: 180 FAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H Sbjct: 181 IGVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHG 240 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q Sbjct: 241 EAHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQR 300 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 NLKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLV 360 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV------ 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 361 YLDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFVISKIFII 420 Query: 412 -LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIY 468 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIY Sbjct: 421 FVMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIY 479 Query: 469 PVPIRDTFSVPLSSIIENY 487 P + S + SI+ NY Sbjct: 480 PDFVLSLASDKVESILSNY 498 >gi|197294165|ref|YP_002149785.1| NADH-plastoquinone oxidoreductase subunit 4 [Cicer arietinum] gi|197089853|gb|ACH41123.1| NADH-plastoquinone oxidoreductase subunit 4 [Cicer arietinum] Length = 497 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 156/483 (32%), Positives = 262/483 (54%), Gaps = 21/483 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRS 60 N P+L+IV LP +IL + G ++ + I I+ + + + + F Sbjct: 3 NFPWLTIVVVLPIAAGSLILLFPHRGNKVIRWYSIC--ICLIDLLLTTYAFCYHFQLDDP 60 Query: 61 SFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E Y WI++F Y LG+DG+SI ++LT F+T L++ Q REY + + Sbjct: 61 LIQLTENYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAA----QPVTREYPLFYF 116 Query: 120 VLESM---VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 ++ +M +G F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+ Sbjct: 117 LMLAMYSGQMGPFASRDILLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGSSV 176 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 F+L ++ + ++ ++ +P ++ +I F +FA+K P+ P HTWLP+ Sbjct: 177 FLLIGVLGIGLYGSNEPTLNFETLTNQSYPVVLEIIFYIGFLIAFAVKSPIIPLHTWLPD 236 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 H +A + + LAGI+LKMG YG +R + F A F P + + I IIYA+L + Sbjct: 237 THGEAHYSTCMLLAGILLKMGAYGLVRINMEFFSHAHSIFCPWLMIVGSIQIIYAALTAF 296 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q ++KK IAYSS++HMG++ IGI S +G+ G + Q++SHG + +ALFF G YDRL Sbjct: 297 GQRNLKKRIAYSSVSHMGFIIIGIGSISDTGLNGVILQIISHGFIGAALFFLAGTSYDRL 356 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN------- 407 + GG+ MP+ + + +MA++ LPG SGF+ E +V + + Sbjct: 357 RLLYLDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLFMMKI 416 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFG 466 + + + G++L+ +Y L + R++ +G D RE + I + + G Sbjct: 417 LITFVTAIGMILTPIYLLSILRQMFYGYKFFNTPNSYFFDSGPRELFISISILIPVIGIG 476 Query: 467 IYP 469 IYP Sbjct: 477 IYP 479 >gi|193806301|sp|A4QKY4|NU4C_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 161/499 (32%), Positives = 278/499 (55%), Gaps = 17/499 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ +++ I + F ++ F Sbjct: 3 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTISICILELLLTTYAFCYN-FKMDDPL 61 Query: 62 FQMIEYYHWIDYFCSYH--LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q+ E Y WI+ FC ++ +G+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 62 IQLSEDYKWIN-FCDFYWRMGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFHFLML 119 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 + S IG+F S D+LLF+I +E LIP++ ++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 120 AMYSGQIGSFSSRDLLLFFIMWELELIPVYHLLSMWGGKKRLYSATKFILYTAGSSIFLL 179 Query: 180 FAI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H Sbjct: 180 IGVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHG 239 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q Sbjct: 240 EAHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQR 299 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 ++KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 300 NLKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLV 359 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV------ 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 360 YLDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFVISKIFII 419 Query: 412 -LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIY 468 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIY Sbjct: 420 FVMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIY 478 Query: 469 PVPIRDTFSVPLSSIIENY 487 P + S + SI+ NY Sbjct: 479 PDFVLSLASDKVESILSNY 497 >gi|315657367|ref|ZP_07910249.1| NADH-quinone oxidoreductase subunit M [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491839|gb|EFU81448.1| NADH-quinone oxidoreductase subunit M [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 530 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 147/449 (32%), Positives = 254/449 (56%), Gaps = 12/449 (2%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE--NFREYMI 116 +FQ+ E Y W+ S+ LGV+G+ +++++L T LTP IL+SW+ + Y Sbjct: 74 GAFQLGESYAWMPAIGLSWALGVNGLGMVMIILATALTPPVILASWRDDNDPNTAAGYAA 133 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE---RIYAAYKFFLYTFF 173 L LES ++ F + D+LLFYI FE L+P++ ++G +G + R +AA KF LY+ Sbjct: 134 LILALESFMVLLFCARDLLLFYIAFEGMLVPLYFLVGRYGNGDAQVRRHAAIKFVLYSLV 193 Query: 174 GSIFMLFAIV---VMCWEKKTSSIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFH 229 G + MLF I+ V + +D F P + WM + F +FAIK PM P H Sbjct: 194 GGLVMLFGIIGVYVHSGGGDQAFHMDYLTSGNFHPGAAGMWMMMTFLVAFAIKAPMVPVH 253 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+ A SV L G++ K+G +G I F LFP AS APVI L++++I++ Sbjct: 254 TWLPSTAAVARGGTSVLLVGVLDKVGTWGMIMFCWQLFPAASAKVAPVIVVLAVLSILWG 313 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 +L ++ Q D+ +L++++S++H G++ + ++ G ++ +EGAM M++HG+ + LF G Sbjct: 314 ALAAISQKDLLRLVSFTSVSHFGFMVLALYIGSQTAIEGAMLYMVAHGVSIAGLFLLSGW 373 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + R T++I AY G P A + +V +A + LPG SGF+ E+L+++ F+ + Sbjct: 374 LTTRGGTQEIAAYRGFQRVTPTLAGLFLVSGLAAIALPGLSGFLPEYLILVGTFKLNIAA 433 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A+++ GVVL+++Y L Y + G V+ KDL+ RE+ ++ P+ + G+ P Sbjct: 434 AMVSILGVVLASVYLLVPYLNMFTGPID-GAVRTAKDLNWREKFIMVPLVLAMFGLGVLP 492 Query: 470 VPIRDTFSVPLSSIIENYTLKTGYSDSVK 498 P + P ++++ ++G + + + Sbjct: 493 GPTLNLIK-PDAALMYQAVSQSGSASAPE 520 >gi|289065139|ref|YP_003434025.1| NADH-plastoquinone oxidoreductase subunit 4 [Typha latifolia] gi|281371822|gb|ADA63749.1| NADH-plastoquinone oxidoreductase subunit 4 [Typha latifolia] Length = 501 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 162/495 (32%), Positives = 265/495 (53%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F + G ++ + + + + F + F Q Sbjct: 6 PWLTILVVLPIFAGSLIFFFPHRGNKMYRWYTICICLLELLLTTYAFCYH-FQLDDPLIQ 64 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E + WID F + LG+DG+SI ++LT F+T L++W I N R + L + Sbjct: 65 LKEDFKWIDVFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-ITRNSRLFYFLMLAMY 123 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF L + Sbjct: 124 SGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFFLIGV 183 Query: 183 VVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + M +D + +P +++ + F ++A+K+P+ P HTWLP+ H +A Sbjct: 184 LGMGLYGSNEPTLDFERLINQSYPVALEIIFYFGFLIAYAVKLPIIPLHTWLPDTHGEAH 243 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q ++K Sbjct: 244 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSLFSPWLVIIGTIQIIYAASTSLGQRNLK 303 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S G+ GA+ QMLSHG + +ALFF G DR+ + Sbjct: 304 KRIAYSSVSHMGFIIIGIGSITDMGLNGAILQMLSHGFIGAALFFLAGTSCDRMRLVYLE 363 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E ++ + + + ++ Sbjct: 364 EMGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVIFFGLITSPKYLLMPKMLITLVM 423 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +Y L + R++ +G D RE + I + + GIYP + Sbjct: 424 AIGMILTPIYLLSMLRQMFYGYKFFNVPNSNFLDSGPRELFLSICIFLPVIGIGIYPDFV 483 Query: 473 RDTFSVPLSSIIENY 487 + +I+ NY Sbjct: 484 LSLSVDRVQAILSNY 498 >gi|172035520|ref|YP_001802021.1| NAD(P)H-quinone oxidoreductase subunit M [Cyanothece sp. ATCC 51142] gi|57864858|gb|AAW57033.1| NADH dehydrogenase subunit D [Cyanothece sp. ATCC 51142] gi|171696974|gb|ACB49955.1| NADH dehydrogenase subunit 4 [Cyanothece sp. ATCC 51142] Length = 500 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 143/402 (35%), Positives = 223/402 (55%), Gaps = 8/402 (1%) Query: 46 IFSLFVW--SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 IF VW + FD S+Q EY W D+ SY LGVDG+S+ L+ L + LT I S Sbjct: 39 IFGATVWLLTQFDLSDPSWQFSEYLPWSDFIGLSYSLGVDGLSLPLIALNSLLTIIAIYS 98 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 +++ E R Y L++ + + GA + ++LLF IF+E LIP +++I +WGG +R Y Sbjct: 99 IGENV-ERPRLYYALTLLINAGITGALAAQNLLLFVIFYELELIPFYLMIAIWGGEKRGY 157 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII-DLYAMSKFPFSIQYWMWIAFFCSFAI 221 A+ KF LYT + +L A + + + SS D+ + + + F I Sbjct: 158 ASTKFLLYTAVSGLLVLAAFLGIGFLNGASSFDYDIITTEGLALNTKLILLTVLLIGFGI 217 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 KIP+ P HTWLP+A+ +A A ++ L GI+ K+G YG IRF L LFP A AP + + Sbjct: 218 KIPLVPLHTWLPDAYTEASPAVTILLGGILAKLGTYGLIRFGLQLFPDAWAIVAPGLAII 277 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 ++++Y +L ++ Q DIK+++AYSSI HMGY+ + +G + GA+ QM+SHGL+ + Sbjct: 278 GTVSVLYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSTLGAVAQMISHGLILA 337 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 LF VG++ ++ TRD+ GL + +P + +++ MA+ G+PG GF EF+V Sbjct: 338 LLFHLVGIVERKVGTRDLDVLNGLMNPIRGLPLTSALLITAGMASAGIPGLVGFAAEFIV 397 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK 440 F +L L+A+Y + L + FG EK Sbjct: 398 FQGSFATFPIPTLLCIVASGLTAVYFVILLNRTCFGKLDNEK 439 >gi|302559053|ref|ZP_07311395.1| NADH-quinone oxidoreductase, M subunit [Streptomyces griseoflavus Tu4000] gi|302476671|gb|EFL39764.1| NADH-quinone oxidoreductase, M subunit [Streptomyces griseoflavus Tu4000] Length = 524 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 160/440 (36%), Positives = 236/440 (53%), Gaps = 26/440 (5%) Query: 55 FDKGR-SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQEN 110 FD + S Q WI HLG DGIS+ L+VLT LT L S+ + Sbjct: 66 FDHDQPSKMQATTDISWIPALGVRIHLGTDGISLPLLVLTALLTFLSALYSYFKPPAGPS 125 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + ++ LVLES + F LD++LF++ FE LIPM+ +I WGG R AA+KF LY Sbjct: 126 PKAFVALLLVLESGTLATFAVLDLILFFLAFETVLIPMYFLIARWGGEGRAGAAWKFILY 185 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS+ ML ++++ + T ++ L + S+Q +A A+K PM+P Sbjct: 186 TLLGSVVMLLGLLLIGIKAGTFDMVALATDNGRSLSVSVQVVAVLAIGLGLAVKTPMWPL 245 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H+WLP+AH APT GSV LAG++LKMG YG +R LLP P + FAP + +++ +IY Sbjct: 246 HSWLPDAHTAAPTVGSVLLAGVLLKMGTYGFVRILLPAAPDGFRTFAPYLAAFAVVGVIY 305 Query: 289 ASLVSM------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 SL + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ Sbjct: 306 GSLACLALAKRGANGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGL 365 Query: 343 LFFCVGVIYDRLHTRDIFAY-----GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 LFF VG + DR + D+ L PR ++ +A++GLPG +GF GE L Sbjct: 366 LFFLVGGLKDRTGSTDLDTLAKETGAALYGKAPRLGGLLAFAAVASLGLPGLAGFWGEML 425 Query: 398 VIMSVFQNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 + F T + +FG +L+A Y L + R+V G + + +L D+ Sbjct: 426 ALFGAFAPGAGLSRPAFLTFMAIGAFGTLLTAAYLLIVVRRVCMG-AVPQDAPKLTDVRS 484 Query: 450 RERCMVYPIAVLTVFFGIYP 469 E P+ VLTV G++P Sbjct: 485 YEFAAWTPLVVLTVVAGLWP 504 >gi|256427303|ref|YP_003127066.1| Nad4p [Dekkera bruxellensis] gi|255761600|gb|ACU32836.1| Nad4p [Dekkera bruxellensis] Length = 482 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 149/408 (36%), Positives = 233/408 (57%), Gaps = 3/408 (0%) Query: 68 YHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 Y + + ++G DGIS++ ++LT +L I+S++K+I YM+ + L ++ Sbjct: 62 YLRVTRLLNINIGYDGISLIFIILTLYLGVISIISNYKNIVARKELYMLLLMSLIILMGL 121 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F+ LD++ FYI FE +LIP+F+IIG++GGS + AAY +YT S+FML +I+++ Sbjct: 122 NFVCLDLISFYILFEITLIPLFLIIGIYGGSNKNKAAYYILIYTLCSSLFMLLSIIMIYI 181 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 I + + +Q + I +K P+ P HTWLP H ++P GS+ L Sbjct: 182 LYNNVDFITINS-KIISMELQSLLLIGLMLGLGVKTPLVPIHTWLPTVHSESPLGGSILL 240 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AGI+LK+ YG IR LL S +AP+++ + +I IIY+SLV++ QTD+K +IAYSS Sbjct: 241 AGIVLKLAIYGIIRILLSNISEISLLYAPILYVIGIITIIYSSLVTLSQTDLKVIIAYSS 300 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLV 366 I+H+G +GIF+ G+ G++ L+HG VS ALF + G++YDR H R +F Y GL Sbjct: 301 ISHLGVCILGIFANNLLGIVGSLVLCLAHGFVSPALFILMGGILYDRYHNRILFYYQGLT 360 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP +A+ ++ F+ N G P + FIGEFL I + + V+LSA Y Sbjct: 361 QFMPIFAIYLVFFSFCNTGTPLSYNFIGEFLCISGAIIKHPFIGAFTAASVILSACYQFK 420 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 L K+ G S + + DL RE ++ +A+ T+ GI P I + Sbjct: 421 LTNKLTSG-SFSKYLSITYDLLYREHFILLFLAIPTLILGIAPNIISN 467 >gi|220907040|ref|YP_002482351.1| proton-translocating NADH-quinone oxidoreductase subunit M [Cyanothece sp. PCC 7425] gi|219863651|gb|ACL43990.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7425] Length = 503 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 153/405 (37%), Positives = 234/405 (57%), Gaps = 7/405 (1%) Query: 53 SVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 S FD + Q E ++W+ + SY LG+DG+S+ LV L + + I + +++ Sbjct: 47 SQFDIQATGLQFGENWNWLPELGLSYQLGLDGLSLPLVCLNSLVLWIAIYCTGENVPRP- 105 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 R Y L++ + V GAFL+ ++LLF++F+E LIP++++I +WGG R YAA KF LYT Sbjct: 106 RLYYSLMLLIATGVAGAFLAQNLLLFFLFYELELIPLYLLISIWGGERRGYAAMKFLLYT 165 Query: 172 FFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHT 230 I +L A + + W +S ++F P Q + F IKIP+ P HT Sbjct: 166 AVSGILILAAFLGVTWLSGANSFAYAEIQTQFLPLGSQAVLLTLLLIGFGIKIPLVPIHT 225 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AHV+A T S+ LAG++LK+G YG +RF L +FP A Q APV+ ++++++Y + Sbjct: 226 WLPDAHVEASTPISMILAGVLLKLGTYGLLRFGLGMFPAAWQGVAPVLAIWAVVSVLYGA 285 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 L ++ Q D+KK++AYSSIAHMGY+ +G + + G + QM+SHGL+S+ LFF VGV+ Sbjct: 286 LTAIAQADMKKMVAYSSIAHMGYILLGAAAATSLSLLGTIMQMVSHGLISALLFFLVGVV 345 Query: 351 YDRLHTRDIFAYGGLV---HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 + TRDI GL+ +P +M++ MA+ G+PG GFI EF+V F Sbjct: 346 QKKTGTRDINILTGLLAPERGLPLVGSLMILGVMASAGIPGMVGFISEFVVFRGSFAVFP 405 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 +L G L+A+Y L L + FG E+ L + ER Sbjct: 406 IPTLLCLVGTGLTAVYFLLLVNRTFFG-RLSEQFSSLPPVKWTER 449 >gi|15616785|ref|NP_239997.1| NADH dehydrogenase I chain M [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133978|sp|P57263|NUOM_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit M; AltName: Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1 subunit M gi|25285152|pir||C84949 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M [imported] - Buchnera sp. (strain APS) gi|10038848|dbj|BAB12883.1| NADH dehydrogenase I chain M [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 505 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 161/490 (32%), Positives = 284/490 (57%), Gaps = 30/490 (6%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ +PFL F FS L + ++ I+T+ + +F F + FQ+ Sbjct: 3 LSLLIIIPFLSSFFSFFSPRLHNNFPRWIALSGIIATLLVVIQIF----FQENYHIFQIR 58 Query: 66 EYYHW--------IDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 Y +W I F +++ +DG+SI++++ ++FL+ I+ SW I++N + Sbjct: 59 HYPNWNCQLIVPWISRFGIEFNIALDGLSIIMLIFSSFLSIIAIICSWNEIKKNEGFFYF 118 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS----ERIYAAYKFFLYTF 172 F+++ + +IG F+S D+ LF+ F+E LIPM+ +I +W + AA KFFLY+ Sbjct: 119 NFMLVFTGIIGVFISCDLFLFFCFWEIMLIPMYFLIALWSDKTEKKKNFLAANKFFLYSQ 178 Query: 173 FGSIFMLFAIVVMCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFP 227 + +L +I+++ + S+ I +L ++Y + I FF SFAIK+P+ P Sbjct: 179 TSGLILLSSILLLVFSHYYSTNILTFNYNLLINKPINIYVEYIVMIGFFLSFAIKMPIVP 238 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 FH WLP+ H ++ + GSV + G++LK Y +R+ L LFP +++ F+ + F +I+I Sbjct: 239 FHGWLPDIHSRSLSCGSVEIIGVLLKTAPYALLRYNLVLFPDSTKSFSLIAVFWGIISIF 298 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 Y + ++ QT+IK+LIAYSS++HMG + IGI+S + ++G + QMLS+ L +AL Sbjct: 299 YGAWIAFSQTNIKRLIAYSSVSHMGLILIGIYSNNERALQGVVIQMLSNSLTVAALCILS 358 Query: 348 GVIYDRLHTRDIFAYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G IY R T+D+ GGL ++ +P ++ + F++AN+G+PGT FIGEFL++ VF+ Sbjct: 359 GQIYKRFKTQDMSKMGGLWSCIYWIPGFS---LFFSLANLGVPGTGNFIGEFLILSGVFE 415 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 V++LA+ G+V S++YSL + +K+ +G C++ ++ ++ +E + + VF Sbjct: 416 VFPLVSILATIGIVFSSIYSLNVIQKIFYG--PCKQNIKVFFINKQEVWTIIALVFTLVF 473 Query: 465 FGIYPVPIRD 474 G+ P I D Sbjct: 474 LGLNPQKIID 483 >gi|256371192|ref|YP_003109016.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidimicrobium ferrooxidans DSM 10331] gi|256007776|gb|ACU53343.1| proton-translocating NADH-quinone oxidoreductase, chain M [Acidimicrobium ferrooxidans DSM 10331] Length = 512 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 167/461 (36%), Positives = 268/461 (58%), Gaps = 16/461 (3%) Query: 34 FGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLT 92 FG+A+ I + L V F G FQ + W+ ++LG DGIS++LV++T Sbjct: 34 FGIAMSIVELGIAVLLAV--RFHIGAPGFQDTQDLRWMGALGVHWYLGADGISLVLVIMT 91 Query: 93 TFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 L F I + + R Y+ L+LE+ +G+F+SLD+LLF++FFE SL+P + +I Sbjct: 92 AVL--FVIAMAAIKGVTDVRAYVGWMLLLEAACMGSFVSLDLLLFFVFFELSLVPAYFLI 149 Query: 153 GVWG--GSERIYAAYKFFLYTFFGSIFMLFAIV--VMCWEKKTSSI---IDLYAMSKFPF 205 +G GS R AA KFF+YTF GS +L I+ V+ + +T ++ + ++ Sbjct: 150 ADFGFLGSGR--AAIKFFVYTFAGSALLLVGIIALVVIHDHQTGNLTFALPALEHTRLAA 207 Query: 206 SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 S +++AF +FA+K P+FPFHTW P+ + +AP V +AG+M K+G YG +RF L Sbjct: 208 STSLLLFLAFTAAFAVKTPIFPFHTWSPDTYAKAPIPAVVIVAGVMAKLGSYGIVRFDLG 267 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 LFP S+ A ++ L++ I++ ++V+ + + +L+ YSS++HMG++ +GIF+ G Sbjct: 268 LFPGTSRQLAWLMLTLAVAGILWGAIVAAGERHLGRLVGYSSLSHMGFIVLGIFAFSTEG 327 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 + G++ QM++HG+ ++A+F +G+IYDR T D GGL + P A V MA G Sbjct: 328 LAGSVLQMVNHGIYTAAMFLLLGMIYDRSGTLDASRLGGLQRHAPVLAGAFTVVVMAQAG 387 Query: 386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 LPG +GF+GEFL+++ F AV+A GVV SA Y LW Y++V ++V + Sbjct: 388 LPGLNGFVGEFLILVGTFVTHRWWAVVAVAGVVGSAAYLLWAYQRVFHRAPSEDRV--VH 445 Query: 446 DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 DL RE ++ P+ + VF G+YP P+ S+I+ Sbjct: 446 DLQWREVALIAPLLAIIVFLGVYPRPVLSAIDPATSAIVAR 486 >gi|167630273|ref|YP_001680772.1| proton-translocating NADH-ubiquinone oxidoreductase, chain m [Heliobacterium modesticaldum Ice1] gi|167593013|gb|ABZ84761.1| proton-translocating NADH-ubiquinone oxidoreductase, chain m [Heliobacterium modesticaldum Ice1] Length = 505 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 155/507 (30%), Positives = 283/507 (55%), Gaps = 12/507 (2%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M P L+I P +G V++F +S +A ++ I +L+ + +D Sbjct: 1 MGFPLLTITLLAPIIGALVLVFVPQ--DEHKSIKWIAAFSMAVSLILTLYAYFAYDFALG 58 Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q E W+ + +Y +GVDG+S+ +++LT + I +SW ++ + + + L Sbjct: 59 GMQFTEDVVWVRELGVTYAMGVDGLSLPMLLLTNLIGFSAIFASWNQ-EKRPKVFFVLLL 117 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI---YAAYKFFLYTFFGSI 176 +L + V+G F+S D+ +F++F+E +IP+++++ +WG S+R+ YA K +Y GS Sbjct: 118 LLIAGVMGTFISRDLFIFFLFYEVVVIPIYIMVIIWGSSKRVTKEYAGMKLTIYLLIGSA 177 Query: 177 FMLFAIVVMCWEK----KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 F+L ++ + + + +++ A + F S Q + + F + MFPFH+W Sbjct: 178 FLLVGVIAIYLNAFPAGERTFLMEKLATANFSDSFQIFAFFLLAVGFGSLLSMFPFHSWS 237 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+ + APTA S+ AG++ K+GGYG IR L P+ ++++APVI FL++ + YA+++ Sbjct: 238 PDGYAGAPTAVSMIHAGVLKKIGGYGLIRLGLLTLPVGAKFWAPVIAFLAVANVAYAAMI 297 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q D+K ++ YSS++HMGYV IG+ + G+ GA+ M +HG++S+ F +G +Y+ Sbjct: 298 ALAQKDLKYVVGYSSVSHMGYVLIGLAALNVIGINGAVANMFAHGIMSALFFAMIGHLYE 357 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 + HTR I GGL H MPR A+ M+ MA++GLPG FI EF + + F +A++ Sbjct: 358 KTHTRWIPDMGGLAHQMPRVAIGFMMAGMASLGLPGLISFIPEFTIFVGSFSVYKVLAII 417 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A G++++ALY+L + V+FG + E L+D E + + + V G++P + Sbjct: 418 AISGIIITALYTLRMIADVLFGPRRSE-FDHLQDAKGAELVPLLVLGSVLVLGGMFPHLL 476 Query: 473 RDTFSVPLSSIIENYTLKTGYSDSVKG 499 D + + ++ + K G + + G Sbjct: 477 MDMVNSGVEPLVAAFLAKLGAAPMIGG 503 >gi|306486031|gb|ADM92663.1| NADH-plastoquinone oxidoreductase subunit 4 [Davidia involucrata] Length = 496 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 149/432 (34%), Positives = 247/432 (57%), Gaps = 12/432 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP +I F G ++ + + I + F + F Q Sbjct: 5 PWLTIIVVLPISAGSLIFFLPQRGNRVIRWYTICICILELLLTTYAFCYH-FQLDDPLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI +F + LG+DG+SI ++LT F+T L++ + + + R + L + Sbjct: 64 LVEDYKWISFFDFHWRLGIDGLSIGPILLTGFITTLATLAA-RPVTRDSRLFHFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + I++ A +P +++ +I FF +FA+K+P+ P HTWLP+ H +A Sbjct: 183 LGVGLYGSNEPILNFETSANQSYPVALEIIFYIGFFIAFAVKLPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S+ Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLIIVGTIQIIYAASTSLGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGIGSITDMGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 363 EMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSPKYLLMPKILITFVM 422 Query: 414 SFGVVLSALYSL 425 + G++L+ +YSL Sbjct: 423 AIGMILTPIYSL 434 >gi|260887656|ref|ZP_05898919.1| NADH dehydrogenase I, M subunit [Selenomonas sputigena ATCC 35185] gi|330838015|ref|YP_004412595.1| proton-translocating NADH-quinone oxidoreductase, chain M [Selenomonas sputigena ATCC 35185] gi|260862672|gb|EEX77172.1| NADH dehydrogenase I, M subunit [Selenomonas sputigena ATCC 35185] gi|329745779|gb|AEB99135.1| proton-translocating NADH-quinone oxidoreductase, chain M [Selenomonas sputigena ATCC 35185] Length = 508 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 154/457 (33%), Positives = 259/457 (56%), Gaps = 19/457 (4%) Query: 49 LFVWSVF--DKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 L VW+ F D Q E WI D SY LGVDGIS+ L++LT + + SSW Sbjct: 45 LSVWAYFGYDLAAGGMQYTERVPWITDLGVSYALGVDGISLPLLLLTELIGVSAVFSSWH 104 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI---Y 162 ++E +E+ I L+L + V G F++ D+ +F + +E +IP+++++ ++G ++R+ Y Sbjct: 105 -VEERSKEFFILLLILIAGVTGTFVANDLFIFLLCYEVVVIPIYILVILFGSTKRVTKEY 163 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSIIDLYAMS------KFPFSIQYWMWIA 214 A K +Y GS F+L +V + S D+ ++ F Q ++ Sbjct: 164 AGMKLTIYLLLGSAFLLVGVVWLYLTAFPAGSRTFDMQMLALAAQGGHFSPGFQIGAFLL 223 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 F + MFPFH+W P+ + APTA S+ AG++ K+GGYG IR L + PL ++++ Sbjct: 224 LLIGFGSLLSMFPFHSWSPDGYAGAPTAVSMIHAGVLKKIGGYGLIRIGLLVLPLGAKFW 283 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 AP+I FL++ ++YA+ +++VQ D+K ++ YSS++HMGYV +G + V GA+ M+ Sbjct: 284 APLIAFLAMCNVLYAAYIALVQKDLKYVVGYSSVSHMGYVLLGFAALNVVSVSGAVANMV 343 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HG++S+ F +G IY++ H R + GL + MPR + M+ MA++GLPG GF+ Sbjct: 344 AHGVMSALFFAMIGFIYEKTHLRTVDDLKGLAYQMPRLSTGFMLAGMASLGLPGLIGFVP 403 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 EF + + VF +AVLA G++ +ALY L L KV+FG + +K +D+ E Sbjct: 404 EFTIFVGVFAEFPILAVLAIAGIIFTALYVLRLLAKVLFGPAD-KKFDAYRDMRGAELVP 462 Query: 455 VYPIAVLTVFFGIYP---VPIRDTFSVPLSSIIENYT 488 + + V V FG++P + + T + PL +++ + Sbjct: 463 LVLLGVALVGFGVFPHLLLGLISTGTEPLQPMLDQLS 499 >gi|194477356|ref|YP_002049535.1| NADH dehydrogenase I chain 4 (or M) [Paulinella chromatophora] gi|171192363|gb|ACB43325.1| NADH dehydrogenase I chain 4 (or M) [Paulinella chromatophora] Length = 498 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 168/477 (35%), Positives = 268/477 (56%), Gaps = 20/477 (4%) Query: 6 LSIVTFLPFLGVFV-ILFSSYLG-CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS + +PFLG V IL+ + + G RS V LGI + + FS+ + F+ Q Sbjct: 2 LSPLLLIPFLGAIVLILWPTRMSPMGLRSIAVVFLGIQLV-WTFSVLIG--FNPNDGGMQ 58 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQENFREYMIAFLV 120 M E WI Y L VDGIS+ L+++ L C++S+W S+ R Y LV Sbjct: 59 MNESIPWISSIGLEYDLAVDGISLPLLLINAGL---CLVSAWVSGSVSNRPRLYFSLLLV 115 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + V GAFLS ++LLF++F+E LIP++++I +WGG R YAA KF ++T I +L Sbjct: 116 ISGAVNGAFLSQNLLLFFLFYELELIPLWLLIAIWGGKNRAYAATKFLIFTAISGILILA 175 Query: 181 AIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A + + + L+ + + + Q + IA F IKIP+FPFHTWLP+AH + Sbjct: 176 AFLGLALSTGSVDF-SLHPLLSQELNINTQLVLIIALLVGFGIKIPLFPFHTWLPDAHTE 234 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A T SV LAG++LK+G YG +RF + LFP A AP + + ++I++ SL ++ Q+D Sbjct: 235 ASTPVSVLLAGVLLKLGTYGLLRFCVGLFPEAWYLLAPWLAAWAALSILFGSLAAIAQSD 294 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K+++AYSS+ HMGY+ + + + GA FQM+SHGL+S LF VGV+Y+ TR+ Sbjct: 295 MKRMVAYSSVGHMGYILLAAAAATPVSILGAEFQMISHGLISGLLFLLVGVVYNATGTRN 354 Query: 359 IFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 + GL++ +P +M++ MA+ G+PG +GF+GEFL+ + +++ Sbjct: 355 LDILRGLLNPQRGLPLTGSLMILGVMASAGIPGMAGFLGEFLIFRGSLEAFPLATLISMV 414 Query: 416 GVVLSALYSLWLYRKVVFG---VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G L+A+Y L L +V FG ++ L + L ++ +++ + G+ P Sbjct: 415 GSGLTAVYFLLLVNRVFFGRLSIASTGNPAILNQVYLADQIPALALSLSVITIGLIP 471 >gi|33639883|emb|CAE19053.1| putative NADH Dehydrogenase (complex I) subunit (chain 4) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 494 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 149/444 (33%), Positives = 249/444 (56%), Gaps = 11/444 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD SS Q+IE W+ + LG+DG+S LV L+ +T +SWK I++ Sbjct: 38 FDTTNSSLQLIERLTWLPSIGLEWSLGIDGLSAPLVALSGLITFLSAAASWK-IKKKSNL 96 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L+ S FLS D LLF++ +E L+P++++I +WGG +++YAA KF LYT Sbjct: 97 YFALLLIQASAQALVFLSQDFLLFFLAWELELVPVYLLIAIWGGKKKLYAATKFILYTAL 156 Query: 174 GSIFMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 S+ +L + + + T ++ + + S+ ++ F F +K+P+FP HTWL Sbjct: 157 ASLLILISGLALALSGDTFTLNLTEITNKQVKGSLALLSYLGFLIGFGVKLPIFPLHTWL 216 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH +A S+ LAGI+LKMGGY +RF + + P AP + L +I IIY +L Sbjct: 217 PDAHGEANAPVSMLLAGILLKMGGYALLRFNVQILPEVHLQLAPALIILGIINIIYGALN 276 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q ++K+ IA SS++HMG+V +GI + G+ GAM QM+SHGL+++A+FF G Y+ Sbjct: 277 AFAQDNVKRRIACSSVSHMGFVLLGIGAVDALGISGAMLQMISHGLIAAAMFFVTGSFYE 336 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------ 406 R +T I GGL +P + ++A++ LPG SGFI E V + + Sbjct: 337 RTNTLSIPNMGGLAKVLPITFAFFLASSLASLALPGMSGFISEITVFLGITSQEGFSSLF 396 Query: 407 NTVAVL-ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 ++ +L A+ G+VL+ +Y L + R+V FG + + +K+++ RE + + + + T+ Sbjct: 397 RSITILIAAIGLVLTPIYLLSMCRRVFFG-PRIPALATVKEMNGRELTIGFSLLLPTLVI 455 Query: 466 GIYPVPIRDTFSVPLSSIIENYTL 489 G +P + + +++ + TL Sbjct: 456 GFWPKIAINLYESSTNALSQQLTL 479 >gi|219682096|ref|YP_002468480.1| NADH dehydrogenase I chain M [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621829|gb|ACL29985.1| NADH dehydrogenase I chain M [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085907|gb|ADP65989.1| NADH dehydrogenase I chain M [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086480|gb|ADP66561.1| NADH dehydrogenase I chain M [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087061|gb|ADP67141.1| NADH dehydrogenase I chain M [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 505 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 161/490 (32%), Positives = 284/490 (57%), Gaps = 30/490 (6%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ +PFL F FS L + ++ I+T+ + +F F + FQ+ Sbjct: 3 LSLLIIIPFLSSFFSFFSPRLHNNFPRWIALSGIIATLLVVIQIF----FQENYHIFQIR 58 Query: 66 EYYHW--------IDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 Y +W I F +++ +DG+SI++++ ++FL+ I+ SW I++N + Sbjct: 59 HYPNWNYQLIVPWISRFGIEFNIALDGLSIIMLIFSSFLSIIAIICSWNEIKKNEGFFYF 118 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS----ERIYAAYKFFLYTF 172 F+++ + +IG F+S D+ LF+ F+E LIPM+ +I +W + AA KFFLY+ Sbjct: 119 NFMLVFTGIIGVFISCDLFLFFCFWEIMLIPMYFLIALWSDKTEKKKNFLAANKFFLYSQ 178 Query: 173 FGSIFMLFAIVVMCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFP 227 + +L +I+++ + S+ I +L ++Y + I FF SFAIK+P+ P Sbjct: 179 TSGLILLSSILLLVFSHYYSTNILTFNYNLLINKPINIYVEYIVMIGFFLSFAIKMPIVP 238 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 FH WLP+ H ++ + GSV + G++LK Y +R+ L LFP +++ F+ + F +I+I Sbjct: 239 FHGWLPDIHSRSLSCGSVEIIGVLLKTAPYALLRYNLVLFPDSTKSFSLIAVFWGIISIF 298 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 Y + ++ QT+IK+LIAYSS++HMG + IGI+S + ++G + QMLS+ L +AL Sbjct: 299 YGAWIAFSQTNIKRLIAYSSVSHMGLILIGIYSHNERALQGVVIQMLSNSLTVAALCILS 358 Query: 348 GVIYDRLHTRDIFAYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G IY R T+D+ GGL ++ +P ++ + F++AN+G+PGT FIGEFL++ VF+ Sbjct: 359 GQIYKRFKTQDMSKMGGLWSCIYWIPGFS---LFFSLANLGVPGTGNFIGEFLILSGVFE 415 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 V++LA+ G+V S++YSL + +K+ +G C++ ++ ++ +E + + VF Sbjct: 416 VFPLVSILATIGIVFSSIYSLNVIQKIFYG--PCKQNIKVFFINKQEVWTIIALVFTLVF 473 Query: 465 FGIYPVPIRD 474 G+ P I D Sbjct: 474 LGLNPQKIID 483 >gi|148241927|ref|YP_001227084.1| NAD(P)H-quinone oxidoreductase chain 4 [Synechococcus sp. RCC307] gi|147850237|emb|CAK27731.1| NAD(P)H-quinone oxidoreductase chain 4 [Synechococcus sp. RCC307] Length = 506 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 149/430 (34%), Positives = 238/430 (55%), Gaps = 16/430 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD + Q++E+ W+ Y L VDG+S+ L+++ LT + + + + R Sbjct: 56 FDPSVGTPQLVEFTPWVSRIGLDYRLAVDGLSLPLILINAALTLVSAVCT-RDFDQRPRI 114 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L++ V GAFL+ ++LLF IF+E LIP++++I VWGG+ R YA+ KF ++T Sbjct: 115 YFSMLLLISGAVNGAFLADNLLLFVIFYELELIPLWLLIAVWGGANRGYASTKFLIFTAV 174 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 +L A + + + A+++ P + Q + + F IKIP+ PFH WL Sbjct: 175 SGFLILAAFFGLALVSGSVNFNITPALTENLPVATQLVLLVTLLIGFGIKIPLVPFHVWL 234 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AH QA T SV LAG++LK+G YG +RF L LF AP + + I+++Y SL Sbjct: 235 PDAHTQASTPVSVMLAGVLLKLGTYGLLRFGLGLFQEVWPLVAPWLAIWAAISVLYGSLA 294 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q+D+K+++A+SS+ HMGYV + + + + GA+FQM+SHG++S+ LF VG +Y Sbjct: 295 AIAQSDMKRMVAFSSVGHMGYVLLAAAAATPTALLGAVFQMVSHGVISALLFLLVGTVYR 354 Query: 353 RLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + TRD+ GL++ +P +M++ MA+ GLPG +GFI EFLV Q Sbjct: 355 KTGTRDLSVIRGLLNPERGLPLTGTLMILGVMASAGLPGMAGFISEFLVFQGSIQTFPLA 414 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ----------QLKDLSLRERCMVYPIA 459 +L+ G L+A+Y L L + FG V+ QL ++LRE +A Sbjct: 415 TLLSMVGSGLTAVYFLLLVNRAFFGRLAVTPVEDPVAHGRLDVQLAAVALRETIPAVALA 474 Query: 460 VLTVFFGIYP 469 + V G+ P Sbjct: 475 LSVVGLGLIP 484 >gi|238061171|ref|ZP_04605880.1| proton-translocating NADH-quinone oxidoreductase, chain M [Micromonospora sp. ATCC 39149] gi|237882982|gb|EEP71810.1| proton-translocating NADH-quinone oxidoreductase, chain M [Micromonospora sp. ATCC 39149] Length = 501 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 146/365 (40%), Positives = 220/365 (60%), Gaps = 7/365 (1%) Query: 77 YHLGVDGIS-ILLVVLTTFLTPFCILSSWK--SIQENFREYMIAFLVLESMVIGAFLSLD 133 +HLGVDGIS L+V+ C + WK + R + LV+E ++G FL+LD Sbjct: 83 FHLGVDGISYPLVVLTALLTLLCCAYTLWKVPDGGGSGRALVALLLVVEVGILGTFLALD 142 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++LF+ FFE L+PM+ II WGG +R AA KF LYT GS+ +L + V+ T+ Sbjct: 143 LVLFFAFFEVVLLPMYAIIAGWGGPDRRRAARKFALYTLLGSVLLLVGVYVVVAAAGTAD 202 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++ L + P Q + +FA+K P++P HTWLP+AH QAPT GSV LAG++LK Sbjct: 203 LVALTGGAGLPRGTQLAAFTLLGLAFAVKSPLWPLHTWLPDAHTQAPTVGSVILAGVLLK 262 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 MG YG IR + + P +++ APV+ L++ AI+ SL+ + Q ++K+LIAYSS+ HMG+ Sbjct: 263 MGTYGLIRIAVGVAPQGARWAAPVLGVLAVAAIVAGSLICLAQGELKRLIAYSSVGHMGF 322 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V +G+ + +G++ A+ ++HG+++ LFF G I DR HT + GL PR A Sbjct: 323 VLLGVATLTATGLQAALIGNVAHGVITGLLFFLAGAIKDRAHTGALAELSGLRETAPRLA 382 Query: 374 VVMMVFTMANMGLPGTSGFIGE-FLVIMSVFQNS---NTVAVLASFGVVLSALYSLWLYR 429 ++ +A++GLPG +GF GE F V+ +V + T+ VLA+ G L+A Y L L R Sbjct: 383 GLLGFAAVASLGLPGLAGFWGEAFAVVAAVERGGPLWTTLGVLAAIGGALTAAYLLRLLR 442 Query: 430 KVVFG 434 +V G Sbjct: 443 RVTHG 447 >gi|126462515|ref|YP_001043629.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodobacter sphaeroides ATCC 17029] gi|126104179|gb|ABN76857.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodobacter sphaeroides ATCC 17029] Length = 486 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 165/467 (35%), Positives = 252/467 (53%), Gaps = 11/467 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L+ + LPF G LF+ G + + + + S F F G + + Sbjct: 7 LTALILLPFFGGVAALFAGRWGRDAERWVAILALSLALLILISSF----FSPGDGRWIAL 62 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E Y W L +DG+S L++++ L ++ SWK I E A L + Sbjct: 63 ERYDWAPSLGVQVILAMDGLSGALLLVSLALGIVSVVVSWK-ITEYPGLLNAALLWTVAA 121 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 G FLS D+L+F F+E L+P F++I VWG +R AA KF ++ + +L A+ Sbjct: 122 SNGVFLSFDLLVFAFFWELMLVPAFLLISVWGHGDREAAALKFLVFNAVAGLGLLAAVFY 181 Query: 185 M--CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++ T ++ A + P +Q + + F +F +K+P+ P H WLP+AH QAPTA Sbjct: 182 LGATGDRVTFDAFEV-AERQIPHGVQVLLLLGFAGAFLVKLPVPPLHAWLPDAHTQAPTA 240 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LAG++LK G YG RF LFP AP L IY +L++ QTD K+L Sbjct: 241 GSILLAGLLLKTGAYGLFRFPPMLFPEGFATLAPFGLALGAFGSIYGALLACGQTDAKRL 300 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 +AY+S+AHM V +GI G+ + GA +M++H +SALF +G +YDR TRD+ Sbjct: 301 VAYTSVAHMSIVLMGICGGVYFSLMGAGVEMVAHAFSASALFLLIGALYDRTGTRDLREL 360 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGL N PR+A VF A + +PGT+ F+GE LVI +FQ + A + +V+S + Sbjct: 361 GGLQQNAPRFAAAFAVFFSAALAMPGTANFLGEALVITGMFQVNWIFASITLISLVVSVV 420 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Y+ L+++VVFG S+ + L+DL+LRE + +AV T+ FG+ P Sbjct: 421 YATRLFKRVVFGTSR--RTAALEDLTLREMGPIVLLAVATLLFGMLP 465 >gi|290486891|gb|ADD29830.1| NADH-plastoquinone oxidoreductase subunit 4 protein [Staphylea colchica] Length = 500 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 150/438 (34%), Positives = 250/438 (57%), Gaps = 16/438 (3%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI++F Y LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 63 QLAEDYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYSATKFILYTAGSSVFLLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + ++ ++ +P +++ +I FF +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTLNFETLANQSYPVALEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ G++ Q++SHG + + LFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITDTGLNGSILQIISHGFIGALLFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN--------TVAV 411 GG+ +P+ + + +MA++ LPG SGF E +V + + + V Sbjct: 362 DEMGGMAIPIPKIFTMFSILSMASLALPGMSGFFAELIVFFGIITSQKYLLMPKILMICV 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 +A G++L+ +YSL + R++ +G K Q D RE + I + + GIYP Sbjct: 422 MA-LGMILTPIYSLSMLRQMFYGY-KLFNAQNYSFFDSGPRELFVSISIFLPVIGIGIYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 480 DFVLSLSVDKIEAILSNY 497 >gi|221639527|ref|YP_002525789.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodobacter sphaeroides KD131] gi|332558539|ref|ZP_08412861.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodobacter sphaeroides WS8N] gi|221160308|gb|ACM01288.1| Proton-translocating NADH-quinone oxidoreductase, chain M precursor [Rhodobacter sphaeroides KD131] gi|332276251|gb|EGJ21566.1| proton-translocating NADH-quinone oxidoreductase, chain M [Rhodobacter sphaeroides WS8N] Length = 482 Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 165/467 (35%), Positives = 252/467 (53%), Gaps = 11/467 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L+ + LPF G LF+ G + + + + S F F G + + Sbjct: 3 LTALILLPFFGGVAALFAGRWGRDAERWVAILALSLALLILISSF----FSPGDGRWIAL 58 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E Y W L +DG+S L++++ L ++ SWK I E A L + Sbjct: 59 ERYDWAPSLGVQVILAMDGLSGALLLVSLALGIVSVVVSWK-ITEYPGLLNAALLWTVAA 117 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 G FLS D+L+F F+E L+P F++I VWG +R AA KF ++ + +L A+ Sbjct: 118 SNGVFLSFDLLVFAFFWELMLVPAFLLISVWGHGDREAAALKFLVFNAVAGLGLLAAVFY 177 Query: 185 M--CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++ T ++ A + P +Q + + F +F +K+P+ P H WLP+AH QAPTA Sbjct: 178 LGATGDRVTFDAFEV-AERQIPHGVQVLLLLGFAGAFLVKLPVPPLHAWLPDAHTQAPTA 236 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LAG++LK G YG RF LFP AP L IY +L++ QTD K+L Sbjct: 237 GSILLAGLLLKTGAYGLFRFPPMLFPEGFATLAPFGLALGAFGSIYGALLACGQTDAKRL 296 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 +AY+S+AHM V +GI G+ + GA +M++H +SALF +G +YDR TRD+ Sbjct: 297 VAYTSVAHMSIVLMGICGGVYFSLMGAGVEMVAHAFSASALFLLIGALYDRTGTRDLREL 356 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GGL N PR+A VF A + +PGT+ F+GE LVI +FQ + A + +V+S + Sbjct: 357 GGLQQNAPRFAAAFAVFFSAALAMPGTANFLGEALVITGMFQVNWIFASITLISLVVSVV 416 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Y+ L+++VVFG S+ + L+DL+LRE + +AV T+ FG+ P Sbjct: 417 YATRLFKRVVFGTSR--RTAALEDLTLREMGPIVLLAVATLLFGMLP 461 >gi|113954877|ref|YP_731161.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family protein [Synechococcus sp. CC9311] gi|113882228|gb|ABI47186.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family protein [Synechococcus sp. CC9311] Length = 501 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 163/440 (37%), Positives = 250/440 (56%), Gaps = 19/440 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L+++ +PFLG ++ G + L I ++ I S V FD S Q+ Sbjct: 3 LTLLLIIPFLGALLLSLWPE-GSTPAQLRRLTLVILSVQCIASFAVLFWFDPSNSGLQLQ 61 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKS--IQENFREYMIAFLVLE 122 E+ W+ Y L VDGIS+ LV++ L C++S+ S I+ R Y L++ Sbjct: 62 EHLPWLPSVGLDYSLAVDGISLPLVLMNAVL---CLVSAVASRKIENRPRIYFALLLIIS 118 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML--- 179 V GAFL+ ++LLF++F+E LIP++++I +WGG+ R YA+ KF + T + +L Sbjct: 119 GAVNGAFLAQNLLLFFLFYELELIPLWLLIAIWGGANRAYASTKFLIVTAVSGVLILAAF 178 Query: 180 --FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 A+V + S I+ + + Q + + F IKIP+FPFHTWLP+AH Sbjct: 179 LGIALVTGSVDFGISPILA----GEMGLTSQLLLMGSLLIGFGIKIPLFPFHTWLPDAHT 234 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A T SV LAG++LK+G YG +RF L LFP A + AP + + I+++Y SL ++ Q+ Sbjct: 235 EASTPVSVLLAGVLLKLGTYGLLRFCLGLFPEAWEVAAPWLALWAAISVLYGSLAAIAQS 294 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K+++AYSS+ HMGYV + + G+ GA+FQM+SHGL+S+ LF VGV+Y+R TR Sbjct: 295 DMKRMVAYSSVGHMGYVLLAAAAATPLGLIGALFQMVSHGLISAILFLAVGVVYERTGTR 354 Query: 358 DIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 D+ GL++ +P +M+V MA+ G+PG +GFI EFLV Q +L Sbjct: 355 DLNVLRGLLNPQRGLPLTGSLMIVGVMASAGIPGMAGFISEFLVFRGSLQPFPIATLLCM 414 Query: 415 FGVVLSALYSLWLYRKVVFG 434 G L+A+Y L L + FG Sbjct: 415 VGSGLTAVYFLLLVNRAFFG 434 >gi|197107564|gb|ACH42362.1| NADH dehydrogenase subunit 4 [Asperococcus bullosus] Length = 246 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 127/243 (52%), Positives = 170/243 (69%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 V+LTT + P C+LSSW + N + +I+FL E +++ F +LD+L FYIF EA LIP+ Sbjct: 4 VILTTLIFPLCLLSSWSFNKGNVKTXLISFLSXEXVLLLVFTNLDLLFFYIFXEAVLIPI 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG++G +R I AAY FFLYT FGS+FML V+ + S+ + A F Sbjct: 64 FLVIGIYGSRQRKIRAAYMFFLYTLFGSLFMLLG-VIYIYLFAGSTNYEALATVGFSSYD 122 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 123 QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 182 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P AS YF P +F LSL+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G GVE Sbjct: 183 PEASVYFTPFVFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGVE 242 Query: 328 GAM 330 A+ Sbjct: 243 AAI 245 >gi|317969551|ref|ZP_07970941.1| NAD(P)H-quinone oxidoreductase chain 4 [Synechococcus sp. CB0205] Length = 502 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 156/438 (35%), Positives = 243/438 (55%), Gaps = 13/438 (2%) Query: 5 FLSIVTFLPFLGVF-VILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS + +PFLG ++L+ GR + +GI I I SL + FD + Q Sbjct: 2 LLSSLLLIPFLGTAALLLWPGEQPLGRLRL--ITIGILVIQLIASLVITIQFDPSVAGMQ 59 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E++ W+ Y LG+DG+S+ LV++ LT + + + I R Y L++ Sbjct: 60 LQEFHRWLPGIGLDYALGIDGLSLPLVLINAALTLVSAIIT-RDIDRRPRIYFAMLLLIS 118 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 V GAF++ ++LLF++F+E LIP++++I VWGG+ + YAA KF ++T ML Sbjct: 119 GAVNGAFIADNLLLFFLFYELELIPLWLLISVWGGANKAYAATKFLIFTAISG--MLILG 176 Query: 183 VVMCWEKKTSSI---IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + T ++ I + Q + +A F IKIP+ P H WLP+AH QA Sbjct: 177 AFLGLALLTGTVDFSITPVLSDRLAMGGQIVLLVAILLGFGIKIPLVPLHNWLPDAHTQA 236 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 T SV LAG++LK+G YG +RF L LFP A AP + + I+++Y SL ++ QTD+ Sbjct: 237 ATPVSVLLAGVLLKLGTYGLLRFGLQLFPEAWAELAPGLAIWAAISVLYGSLAAIAQTDM 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+++A+SS+ HMGYV + + + GA+FQM++HGL+S+ LF VG++Y + TRD+ Sbjct: 297 KRMVAFSSVGHMGYVLLAAAANTPISLLGAVFQMVAHGLISALLFLLVGIVYRKTGTRDL 356 Query: 360 FAYGGLV---HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 GL+ +P +M++ MA+ GLPG +GFI EFLV +L+ G Sbjct: 357 KVLHGLLSPEKGLPLTGTLMILAVMASAGLPGMAGFISEFLVFRGSISAFPVATLLSMVG 416 Query: 417 VVLSALYSLWLYRKVVFG 434 L+A+Y L L + FG Sbjct: 417 SGLTAVYFLLLVNRAFFG 434 >gi|269218349|ref|ZP_06162203.1| NADH-quinone oxidoreductase, M subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212208|gb|EEZ78548.1| NADH-quinone oxidoreductase, M subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 499 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 139/418 (33%), Positives = 229/418 (54%), Gaps = 8/418 (1%) Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF--- 118 Q+ E Y WI S GV+G+ +++V L FL P +L++ + + + Sbjct: 67 QLAEDYSWIPQIGASVAWGVNGMGLVMVGLAVFLVPLVLLAAAGDFRGETPNRVAGYVGW 126 Query: 119 -LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L LE+++IG F + D+ LFY+ FE ++PM+ +IG +GG AA KF LY+ FG + Sbjct: 127 VLALEAVMIGIFAARDVFLFYVLFELMILPMYFLIGRYGGEGASRAAIKFVLYSLFGGLV 186 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML +V + + S + + ++ +++ FF +FAIK PMFP HTWLP+A Sbjct: 187 MLVGVVALAARAEGSKGLLFESAAQAAGGNGMLVFLTFFAAFAIKAPMFPVHTWLPDAAE 246 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +AP S L G++ K+G YG I LP+ P A++ A + ++I+I + + +++ Sbjct: 247 KAPAGTSTLLVGVLDKVGAYGMIALCLPIAPDAAKSAAVPVMVFAVISIFWGAFMAIASN 306 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+ +LIAY S++H G++ +G+FSG + + GA+ M++HG+ + ALF VG + R Sbjct: 307 DLMRLIAYISVSHFGFIVLGVFSGSSTAMTGAIVYMVAHGVATGALFLTVGFLRRRGGDA 366 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 I YGG P A V +V +A + LPG SGF+ E+LV+M F+ A++A V Sbjct: 367 LITTYGGWQRVTPVIAGVFLVSGLATIALPGLSGFVPEYLVLMGTFKVHRAFALVAVLAV 426 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 +L+A+Y L Y+++ G V DL RE+ + + + G +P P+ D Sbjct: 427 ILAAVYILLPYQRIFTGPKPDVAV---PDLDAREKTVAGILVAAMLALGFFPSPLVDA 481 >gi|229076504|ref|ZP_04209466.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock4-18] gi|229099724|ref|ZP_04230650.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock3-29] gi|228683694|gb|EEL37646.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock3-29] gi|228706690|gb|EEL58901.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock4-18] Length = 495 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 155/430 (36%), Positives = 251/430 (58%), Gaps = 30/430 (6%) Query: 32 SFFGVAL--GISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YH 78 FG AL GI+T+ + + G+S E WI + F + Y Sbjct: 30 GLFGTALPFGIATV-------LACTYASGKSLSLFDEKVKWIKFGDFAAVDKRWFSIYYE 82 Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++LF+ Sbjct: 83 LGIDGLSLVMMVLTALLAMLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAKNLMLFF 141 Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I +L Sbjct: 142 IFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIAELK 201 Query: 199 AM---------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + P SIQ ++IA +FAIK+P+FP H W+ N H++A A + AG Sbjct: 202 EILTGVSAGGGQIVPSSIQLGVFIAIMIAFAIKLPIFPLHRWMVNVHIEAHPAVVMLHAG 261 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+ Sbjct: 262 VLLKIGAYGMIRFGKGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSIS 321 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++ Sbjct: 322 HMGIVLMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSV 381 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 382 PILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVLGIILTAVYVLRATL 441 Query: 430 KVVFGVSKCE 439 +V FG + E Sbjct: 442 QVTFGKKEWE 451 >gi|193806295|sp|A4QLY5|NU4C_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 159/498 (31%), Positives = 276/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 3 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 61 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++ Y +G+DG+SI ++LT F+T L+++ +++ + + L Sbjct: 62 IQLSEDYKWINFLDFYWRMGIDGLSIGTILLTGFITTLATLAAFPVTRDS-KLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 361 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 421 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 480 DFVLSLASDKVESILSNY 497 >gi|154362195|ref|YP_001123865.2| NADH dehydrogenase subunit 4 [Nasturtium officinale] Length = 501 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 159/498 (31%), Positives = 276/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 4 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 62 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++ Y +G+DG+SI ++LT F+T L+++ +++ + + L Sbjct: 63 IQLSEDYKWINFLDFYWRMGIDGLSIGTILLTGFITTLATLAAFPVTRDS-KLFHFLMLA 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 122 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 181 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 182 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 242 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 302 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 362 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 422 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 480 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 481 DFVLSLASDKVESILSNY 498 >gi|218438358|ref|YP_002376687.1| NAD(P)H-quinone oxidoreductase subunit D4 [Cyanothece sp. PCC 7424] gi|218171086|gb|ACK69819.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7424] Length = 494 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 174/469 (37%), Positives = 258/469 (55%), Gaps = 8/469 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS +PFLG I F G R+ VAL I++ I +L + FD Q Sbjct: 2 LSAFILIPFLGAIAIGFLPINLDGNRTRL-VALVIASSILILNLILGFQFDPTTLQLQFS 60 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E WI SYHLG+DG+S L+ + + LT I SS S++ Y + FL L Sbjct: 61 EQIPWISSLGLSYHLGIDGLSFPLLFINSLLTLIAIYSSSPSLERPRFYYALLFL-LNGG 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V GAFL+ D+LLF++F+E +IP++ +I +WGG R YAA KF LYT I +L + + Sbjct: 120 VSGAFLAQDLLLFFLFYELEIIPLYFLIAIWGGQRRGYAAMKFLLYTALSGILVLVSFLG 179 Query: 185 MCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + W SS + + P Q + I IKIP+FPFHTWLP+AHV+A T Sbjct: 180 LVWLSGASSFDYEPLRSNTLPVETQILLLIPLLIGLGIKIPIFPFHTWLPDAHVEASTPV 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAG++LK+G YG +RF + LF AP + L+ ++ +Y + ++ Q D+KK++ Sbjct: 240 SVLLAGVLLKLGTYGLLRFGIGLFLQGWVAIAPWMATLAAVSALYGASCAIAQKDMKKVV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSIAHM Y+ + + + + A++QM+SHGL+S+ LF VGV+Y + +RD+ Sbjct: 300 AYSSIAHMAYILLAAAASTRLSILAAIYQMISHGLISALLFLLVGVVYKKTGSRDVNYLR 359 Query: 364 GLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL++ +P +M++ MA+ G+PG GFI EFLV + +L G L+ Sbjct: 360 GLLNPERGLPVTGTLMILGVMASAGIPGMVGFIAEFLVFRGSYPIFPIQTLLCLIGSGLT 419 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A+Y L + KV FG +++ +L + ER +AVL + GI P Sbjct: 420 AVYFLLMINKVFFG-RLTDQLSKLPRVLWAERTPAMVLAVLIIVLGIQP 467 >gi|320009159|gb|ADW04009.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces flavogriseus ATCC 33331] Length = 516 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 162/435 (37%), Positives = 238/435 (54%), Gaps = 25/435 (5%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQENFREYMI 116 S Q WI HLG DGIS+ L+VLT LT C L S+ + + ++ Sbjct: 64 SKMQATTDISWIPALDVRIHLGTDGISLPLLVLTALLTFLCALHSYFKPPAGPSPKAFVA 123 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+LES + F LD+LLF++ FE LIPM+ +I WGG + AA+KF LYT GS+ Sbjct: 124 LVLLLESGTLATFAVLDLLLFFLAFEMVLIPMYFLIARWGGDRKQPAAWKFILYTLLGSV 183 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 ML ++++ E T ++ L + S+Q +A A+K PM+P H+WLP+ Sbjct: 184 IMLLGLLLIGLESGTFDMVALATDNGRGLTTSVQVVAVLAVGLGLAVKTPMWPLHSWLPD 243 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH APT GSV LAG++LKMG YG +R LLP+ P Q FAP + +++ IIY SL + Sbjct: 244 AHTAAPTVGSVLLAGVLLKMGTYGFVRILLPVTPDGMQTFAPYLAAFAVVGIIYGSLACL 303 Query: 295 ------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ LFF VG Sbjct: 304 ALARPGAKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGLLFFLVG 363 Query: 349 VIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 + DR T D+ G L PR ++ +A++GLPG +GF GE L + F Sbjct: 364 AVKDRYGTADLDTLAGATGAALYGRAPRLGGLLAFAAVASLGLPGLAGFWGEMLTLFGAF 423 Query: 404 QNSNTVAVLA--------SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + ++ A + G +L+A Y L + R+V G + E+ + D+ E Sbjct: 424 DPAEGLSRPAFLTYMSIGALGTLLTAAYMLIVVRRVCMGEQR-EQPHPVADVRRHELAAW 482 Query: 456 YPIAVLTVFFGIYPV 470 P+A LTV G++P Sbjct: 483 TPLAALTVLAGLWPA 497 >gi|293191762|ref|ZP_06609286.1| NADH-quinone oxidoreductase, M subunit [Actinomyces odontolyticus F0309] gi|292820455|gb|EFF79438.1| NADH-quinone oxidoreductase, M subunit [Actinomyces odontolyticus F0309] Length = 515 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 162/502 (32%), Positives = 276/502 (54%), Gaps = 24/502 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYL--GCGRRSFFGVALGISTINFIFSLFVWSVFD-KG 58 N P+LS++ +P G ++ F L GR V+L + + SVFD Sbjct: 5 NFPWLSVLVAVPAAGAALLGFVPPLRRAAGRVVVLVVSLVELALGVYVAA---SVFDWSA 61 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR-EYMI 116 +S+Q+ E + WI ++ LGV + +++++L L P +++ W R Y Sbjct: 62 PASYQVYESHLWIPQIGITWSLGVTALGLVMILLAIGLVPLVLIAGWDEDDAADRGAYPA 121 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSE--RIYAAYKFFLYTFF 173 L L++ ++ F + D+ +FY FEA L+P++++IG +G G E R AA KF LY+ F Sbjct: 122 LVLALQAFMVVIFAAYDLTVFYFAFEAMLVPLYLMIGRYGVGDEAARHKAAMKFLLYSLF 181 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDL----------YAMSKFPFSIQYWMWIAFFCSFAIKI 223 G + ML I+ + W K + ++ D+ + + P +IQ +++ F +FAIK Sbjct: 182 GGLVMLGGILYL-WAKGSQALQDVSTFFRIDTLAHILPSAPLAIQMVVFVTFMVAFAIKA 240 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 PM P HTWLP+ A SV L G++ K+G +G I L L P A+ V+ L++ Sbjct: 241 PMVPVHTWLPDTAAVARPGTSVLLVGVLDKIGTFGMIALCLQLTPGAAVSAKWVMCVLAV 300 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 I+I++ L + Q DI +L++Y+S++H G++ +GIF G + + GAMF M++HG+ +A+ Sbjct: 301 ISILWGGLAANGQNDIMRLVSYTSVSHFGFMVLGIFIGSQIALVGAMFYMVAHGVSIAAM 360 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 F G + R T+D+ Y G+ P A + +V +A++ LPG SGF+ E+LV+M + Sbjct: 361 FLLSGWLSRRGGTQDMREYVGMQRVTPVLAGLWLVSGLASIALPGLSGFVPEYLVLMGTW 420 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 S +A+ A GVV++ALY L Y++V G K ++L DL+ RER ++ P+ + Sbjct: 421 SLSGPLALFAVLGVVIAALYVLMPYQRVFTGAPGKGK-EELADLATRERGVMVPLVAAML 479 Query: 464 FFGIYPVPIRDTFSVPLSSIIE 485 GI+ P+ + P++S ++ Sbjct: 480 ILGIWSAPLVSALT-PVASDLD 500 >gi|193806305|sp|A4QKF7|NU4C_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 160/498 (32%), Positives = 275/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 3 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 61 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++ Y +G+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 62 IQLSEDYKWINFLDFYWRMGIDGLSIGTILLTGFITTLAALAAFPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 121 MYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 181 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGASYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 361 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 421 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 479 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 480 DFVLSLASDKVESILSNY 497 >gi|134286537|dbj|BAF50162.1| NADH dehydrogenase ND4 [Barbarea verna] Length = 506 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 160/498 (32%), Positives = 275/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 9 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 67 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++ Y +G+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 68 IQLSEDYKWINFLDFYWRMGIDGLSIGTILLTGFITTLAALAAFPVTRDS-RLFHFLMLA 126 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 127 MYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 186 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 187 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGE 246 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 247 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 306 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 307 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGASYDRIRLVY 366 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 367 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 426 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 427 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 485 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 486 DFVLSLASDKVESILSNY 503 >gi|229082506|ref|ZP_04214969.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock4-2] gi|228700938|gb|EEL53461.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock4-2] Length = 496 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 249/423 (58%), Gaps = 17/423 (4%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 82 YELGIDGLSLVMMVLTALLAMLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 141 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 200 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 201 LKEILRSVSAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 260 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 261 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 320 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL Sbjct: 321 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITVLGGLAK 380 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 N+P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 381 NVPILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 440 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 +V FG + E + D+ E V + + G+ P + D PL + ++ Sbjct: 441 TLQVTFGKKEWE---EKSDIHGWEYVPVLLLIFCIIAIGVMPELLGD----PLQNTLKTL 493 Query: 488 TLK 490 +K Sbjct: 494 GVK 496 >gi|154362193|ref|YP_001123337.2| NADH dehydrogenase ND4 [Barbarea verna] Length = 501 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 160/498 (32%), Positives = 275/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 4 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 62 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++ Y +G+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 63 IQLSEDYKWINFLDFYWRMGIDGLSIGTILLTGFITTLAALAAFPVTRDS-RLFHFLMLA 121 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 122 MYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 181 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 182 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 242 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 302 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGASYDRIRLVY 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 362 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 422 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 480 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 481 DFVLSLASDKVESILSNY 498 >gi|296140863|ref|YP_003648106.1| proton-translocating NADH-quinone oxidoreductase, chain M [Tsukamurella paurometabola DSM 20162] gi|296028997|gb|ADG79767.1| proton-translocating NADH-quinone oxidoreductase, chain M [Tsukamurella paurometabola DSM 20162] Length = 491 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 148/442 (33%), Positives = 249/442 (56%), Gaps = 13/442 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI--QENF 111 FD FQ E + WI F Y L +DG ++LV+LT L P +L+ W+ Q Sbjct: 49 FDTA-GGFQFAETHRWISSFGAGYRLALDGTGLVLVLLTVALVPILLLAGWRETAPQGTG 107 Query: 112 RE---YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE-----RIYA 163 R Y+ L +E+ V+ +F++ D+LLFY+ FEA LIP++ +I +GG++ R A Sbjct: 108 RRAGAYVALTLAVEAGVLLSFVTTDVLLFYLVFEAMLIPLYFLIAGYGGTDSEPGRRSRA 167 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKI 223 A KF LY G + ML A+V + K T + + A + P + Q M++ F +FA+K Sbjct: 168 AVKFLLYNLIGGLIMLAAVVGLYAAKGTFDL-RVLAGTIDPGAAQNLMFLGFLFAFAVKA 226 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 P++P HTWLP A VQ +V + I+ K+G +G +R+ L LFP AS FAP + L++ Sbjct: 227 PLWPLHTWLPGAAVQTTPPTAVLMMAIVDKVGTFGMLRYCLTLFPDASAKFAPWVAALAV 286 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 I I+Y +++++ Q+D+ LIAY+SI+H G++ +GIF+ G++ M++HG+ ++AL Sbjct: 287 IGIVYGAVLAIGQSDVMALIAYTSISHFGFIILGIFARTGDSQAGSVLYMVNHGVATAAL 346 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 F G++ R +R I +GG P+ + ++ +A + LPG F+ E LVI+ + Sbjct: 347 FLVAGLLVARRGSRRIADFGGAWSRAPKLGAIFLIAGLATLSLPGLGPFVSELLVIVGTY 406 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 AV++ +VLSA+Y LW Y+++ G + ++ + + RE + P+ V Sbjct: 407 PRWAVAAVVSVTALVLSAMYVLWTYQRMFTGPAPEAVMRTVDEAKPRELAFLVPLIVALF 466 Query: 464 FFGIYPVPIRDTFSVPLSSIIE 485 G++P P+ D + +++ E Sbjct: 467 ALGLFPAPVLDAINPSVAATSE 488 >gi|194132144|gb|ACF33398.1| NADH-plastoquinone oxidoreductase subunit 4 [Gonystylus bancanus] Length = 506 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 157/496 (31%), Positives = 269/496 (54%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP I F + G ++ + I T+ + + + F Sbjct: 11 PWLTIIVVLPISAGSFIFFLPHRGNKLIRWYTIC--ICTLELLLLTYAFCYHFQLDDPLI 68 Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI++F Y LG+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 69 QLAEDYKWINFFDFYWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFYFLMLAM 127 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 128 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 187 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + + ++ +P +++ ++I F +FA+K P+ P H WLP+ H +A Sbjct: 188 VLGIGLYGSNDPTFNFETLANQSYPVALEIILYIGFLIAFAVKSPIIPLHIWLPDTHGEA 247 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A F+P + + + IIYA+ S+ Q ++ Sbjct: 248 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFSPWLMIVGTMQIIYAASTSLGQRNL 307 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA Q++SHG + +ALFF G YDR+ + Sbjct: 308 KKRIAYSSVSHMGFIIIGIGSITDTGLNGAFLQIISHGFIGAALFFLAGTSYDRIRLVYL 367 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 368 DEMGGMALPIPKMFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILIIFV 427 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G D RE + I + + GIYP Sbjct: 428 MAIGMILTPIYLLSMSRQMFYGYKLFNAPNSYFFDSGPRELFVSISIFLPVIGIGIYPDF 487 Query: 472 IRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 488 VLSLSGEKVEAILANY 503 >gi|320095561|ref|ZP_08027224.1| NADH-quinone oxidoreductase subunit M [Actinomyces sp. oral taxon 178 str. F0338] gi|319977469|gb|EFW09149.1| NADH-quinone oxidoreductase subunit M [Actinomyces sp. oral taxon 178 str. F0338] Length = 516 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 149/458 (32%), Positives = 248/458 (54%), Gaps = 16/458 (3%) Query: 30 RRSFFGVALGISTINFIFSLFVWSV-FD-KGRSSFQMIEYYHWIDYF-CSYHLGVDGISI 86 R + VAL +S + +L V + FD +S+Q+ + + WI S+ L V +S+ Sbjct: 31 RSAGRAVALAVSAAELVLALVVAATRFDWSAPASYQVTDSFTWIPQLGISWSLSVSALSL 90 Query: 87 LLVVLTTFLTPFCILSSWKSIQENFR-EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASL 145 ++V+L T L P +++ W + + Y L LES ++ F + D+ +FY FEA L Sbjct: 91 VMVLLATALVPLVLVAGWDEEESADQGAYPALVLALESFMVVIFTAWDLAVFYFAFEAML 150 Query: 146 IPMFVIIG---VWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY---- 198 +P++++IG V G +ER AA KF LY+ FG + ML +V + +L+ Sbjct: 151 VPLYLMIGRYGVGGEAERHRAAMKFLLYSLFGGLVMLGGVVALWATAPAPGSRELFFRFD 210 Query: 199 ----AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P Q ++ F +FAIK PM P HTWLP+ A SV L G++ K+ Sbjct: 211 TLAQVSQSLPQGAQALVFATFMVAFAIKAPMVPVHTWLPDTAAVARPGTSVLLVGVLDKI 270 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG I L + P S + L++++II+ L + Q DI +L++Y+S++H G++ Sbjct: 271 GTYGMIVLCLRMLPGPSASARWAMVALAVVSIIWGGLAANGQNDIMRLVSYTSVSHFGFM 330 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+F G ++ + GAMF M++HG+ +A+F+ G + R T+D+ Y G+ P A Sbjct: 331 VLGVFIGSETALVGAMFYMVAHGVSIAAMFWLSGWLSRRGGTQDMREYAGMQRVAPVLAG 390 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + + +A++ LPG SGF+ E+LV+M ++ S A+ A GVV++A+Y L Y++V G Sbjct: 391 LWLTAGLASIALPGLSGFVPEYLVLMGTWRVSAAAALFAVLGVVIAAMYVLMPYQRVFTG 450 Query: 435 VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 K + L DL RER ++ P+ + GI+ P+ Sbjct: 451 APAKGK-EGLSDLGGRERAVMAPVVAAMLVLGIWSAPL 487 >gi|134287071|dbj|BAF50690.1| NADH dehydrogenase ND4 [Nasturtium officinale] Length = 506 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 159/498 (31%), Positives = 276/498 (55%), Gaps = 15/498 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 9 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKMDDPL 67 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI++ Y +G+DG+SI ++LT F+T L+++ +++ + + L Sbjct: 68 IQLSEDYKWINFLDFYWRMGIDGLSIGTILLTGFITTLATLAAFPVTRDS-KLFHFLMLA 126 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 127 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 186 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L A +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 187 GVLGISLYGSNEPTLNLELLANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGE 246 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 247 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 306 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 307 LKKRIAYSSVSHMGFIIIGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 366 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 367 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 426 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + + G++L+ +Y L + R++ +G K V+ D RE + I + + GIYP Sbjct: 427 VMAIGMILTPIYLLSMSRQMFYGY-KLINVKNFSFFDSGPRELFLSISILLPIIGIGIYP 485 Query: 470 VPIRDTFSVPLSSIIENY 487 + S + SI+ NY Sbjct: 486 DFVLSLASDKVESILSNY 503 >gi|219848526|ref|YP_002462959.1| proton-translocating NADH-quinone oxidoreductase subunit M [Chloroflexus aggregans DSM 9485] gi|219542785|gb|ACL24523.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chloroflexus aggregans DSM 9485] Length = 555 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 169/543 (31%), Positives = 279/543 (51%), Gaps = 61/543 (11%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD----- 56 +P+L+++ P +G+ +I + + R+ L + + + + +W+ FD Sbjct: 13 GVPWLTLLVLSPLVGIALIGLAWLMKLDERTVKAGVLAWTGVPLLLAGLIWARFDPQAVA 72 Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 G+ Q++E WI Y LGVDG+S+ LV+LT +TP +++SW+ + E ++ Sbjct: 73 SGQGVVQLVERVPWIQAVRVDYFLGVDGLSMPLVLLTAVMTPVAVVASWR-VSERVHAHL 131 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L+LE+ ++G F++LD F+IF+E SL+P F +I WG +R YAA+KFF+YT GS Sbjct: 132 ALLLLLEAAMLGYFVALDFFFFFIFWEFSLVPAFFLIQNWGREQRRYAAFKFFVYTMAGS 191 Query: 176 IFML--FAIVVMCWEKKTSSIIDLYAMSK------------------------------- 202 + ML F ++ + + DL A+ + Sbjct: 192 LGMLLLFQVIYLAMRQAGYPTFDLIALGRLGQGLPVEGVTGNLRDILFAYLDQLGVTNVL 251 Query: 203 --FPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 +P SI W A F +FAIK+ ++PFHTWLP+A+ + PTA S+ L+ +M KMG Y Sbjct: 252 GRYPLLYNSIAMW---AIFIAFAIKLAVWPFHTWLPDAYAEGPTAASILLSAVMSKMGAY 308 Query: 258 GCIRFLLPLFPLASQYF--APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 G +R LLP P A+QYF A + + + V D+K+LI Y+SI HMGYV Sbjct: 309 GMLRLLLPFTPDAAQYFAPALAALAVVGVVAGAFGALGQVDGDVKRLIGYTSINHMGYVM 368 Query: 316 IGIFSGM----------KSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 + I S + GA+ QM++HGL + ALF+ G +++R ++ GGL Sbjct: 369 LAIAGAAAAGEAGIDARTSAINGALVQMVAHGLSTGALFYLAGALHERTGRWELSGLGGL 428 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P +A VM + AN+GLPG +GF+GEF + + LA G+V++AL L Sbjct: 429 RTGAPTFAGVMGIALFANLGLPGLAGFVGEFFIFRGAWATLPFFTALAVVGLVVTALALL 488 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 +++++ G + + DL +E + PI L++ G+YP P+ + + ++ Sbjct: 489 LMFQRIFLG-PAVGMPRTITDLRPQEFWTMAPILALSLAIGVYPGPLMALGNAAATQLVA 547 Query: 486 NYT 488 +T Sbjct: 548 IFT 550 >gi|311896692|dbj|BAJ29100.1| putative NADH-quinone oxidoreductase subunit M [Kitasatospora setae KM-6054] Length = 508 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 155/421 (36%), Positives = 225/421 (53%), Gaps = 27/421 (6%) Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--ENFR 112 D GR Q + WI HLG DGIS+ L+VLT LT C L S K + R Sbjct: 54 DPGR--MQAVTDVSWIPALDVRLHLGTDGISLPLLVLTALLTFLCALYSVKKLPAGPGGR 111 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF 172 + L+LE+ ++ F LD++LF++ FE LIPM+ ++ WG ++ AA +F LYT Sbjct: 112 AFTGLLLLLETGMLATFAVLDLVLFFLAFEIVLIPMYFLVSRWGSGKKTAAANRFILYTL 171 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 GS ML +++ + T ++ L + + Q +A A+K P +P H+ Sbjct: 172 LGSAVMLLGFLLIGVKAGTFDMVKLADAHGAGLSHTTQLVAALAVLVGLAVKAPAWPLHS 231 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH APT GSV LAG+MLKMG YG +R LLP+ P + FAP + + + I+Y S Sbjct: 232 WLPDAHTAAPTVGSVLLAGVMLKMGTYGLVRVLLPVVPDGTATFAPYLGAFAAVGIVYGS 291 Query: 291 LVSM------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 L + + D+K+LIAYSS+ HMG+V +GI S +G+ GA+F ++HGL++ LF Sbjct: 292 LACLALARAGAKGDLKRLIAYSSVGHMGFVLLGIASLTPTGLNGALFANIAHGLITGLLF 351 Query: 345 FCVGVIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 F VG + DR T D+ G L PR ++ +A++GLPG +GF GE L + Sbjct: 352 FVVGAVKDRYGTADLDTLSGATGAALYGRAPRIGALLAFAAVASLGLPGLAGFWGELLAM 411 Query: 400 MSVFQNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSK-CEKVQQLKDLSLR 450 F + T VLA G +L+A Y L + ++V G K V +L DL Sbjct: 412 YGAFDPAAGLSRPAFVTYMVLAGLGTLLTAGYLLIVVKRVCMGDPKQPAPVAELPDLQAH 471 Query: 451 E 451 E Sbjct: 472 E 472 >gi|17433297|sp|O03060|NU4C_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 166/500 (33%), Positives = 270/500 (54%), Gaps = 17/500 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ ++ I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHKGNKIVRWYTIS--ICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID F + LG+DG+S+ ++LT F+T L++W I N R + L + Sbjct: 63 QLKEDYKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-ITRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPGLDLERLINQSYPATLEILLYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+L S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAIQIIYAALTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTASDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKALITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+ +Y L + R++ +G K V D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGY-KLFNVPNANFVDSGPRELFILICIFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 481 FVLSLSVDRVEALLSNYYPK 500 >gi|218232437|ref|YP_002370066.1| NADH dehydrogenase subunit M [Bacillus cereus B4264] gi|218160394|gb|ACK60386.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus B4264] Length = 500 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 231/372 (62%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 86 YELGIDGLSLVMMVLTALLATLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 144 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 145 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 204 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L M + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 205 LKEMLRSVNAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 264 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 265 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 324 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL Sbjct: 325 ISHMGIVLMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAK 384 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 385 SVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 444 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 445 TLQVTFGKKEWE 456 >gi|57544857|ref|NP_387481.2|ND4_15795 NADH dehydrogenase subunit 4 [Neoceratodus forsteri] gi|44843585|emb|CAE48138.1| NADH deydrogenase subunit 4 [Neoceratodus forsteri] Length = 460 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 145/385 (37%), Positives = 221/385 (57%), Gaps = 11/385 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 LGVD +S L+VLT +L P IL+S K I R Y+ + L++ +I AF + ++ Sbjct: 57 LGVDPLSAPLLVLTCWLLPLMILASQKHIMPEPIARQRTYLTLMISLQTFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFY+ FEA+LIP +II WG +ER++A F YT GS+ +L AI++M + T S Sbjct: 117 ILFYVMFEATLIPTLIIITRWGNQTERLHAGTYFLFYTLTGSLPLLVAILIMHKDIGTMS 176 Query: 194 IIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L P F+ + W W A +F IK+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MLLLQYAQPLPMNTFADKIW-WAACLIAFLIKMPLYGVHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL P I L+L +I S + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMIIMLNPLTKDLAYPFII-LALWGVIMTSSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI + G GA+ M++HGL+SS LF Y+R+H+R + G+ +P Sbjct: 295 MGLVIAGILTQTPWGFTGAIILMIAHGLISSLLFCLANANYERVHSRTLLLARGMQIILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + +AN+ LP T +GE ++I S+F SN +L G +++A YSL+++ Sbjct: 355 LMGTWWFLANLANLALPPTPNLMGELIIITSMFNWSNWTMILTGLGTMITACYSLYMFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G + V ++ RE +V Sbjct: 415 TQRGQTPQHTV-AIEPTHTREHLLV 438 >gi|189304011|gb|ACD85986.1| NADH dehydrogenase subunit 4 [Volvox carteri f. nagariensis] gi|261498878|gb|ACX84832.1| NADH dehydrogenase subunit 4 [Volvox carteri f. nagariensis] gi|261888217|gb|ACY06071.1| NADH dehydrogenase subunit 4 [Volvox carteri f. nagariensis] Length = 442 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 152/421 (36%), Positives = 240/421 (57%), Gaps = 24/421 (5%) Query: 52 WSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTTFLTPFCILSSWKSIQE 109 W FD QM+ HL G+D +++ L++LTT L P C++ + Sbjct: 44 WWTFDASGHGLQMVVILG------RSHLAFGIDAVALSLMLLTTILFPICMM-----LLR 92 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFL 169 + +M F++LE +++GA LD+L FYI FEASLI +F++IG + AAYK L Sbjct: 93 SVAGFM-TFILLEVLILGALCILDLLGFYILFEASLILLFLLIGR-APYGSLDAAYKIVL 150 Query: 170 YTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 YT GS+ +L + ++ E T++++ + S + ++ W +A A+KIP+ P H Sbjct: 151 YTMVGSLVLLPTLFMIYSECGTTNVLYMTCASNYQ-TVLGWGLLAVL---AVKIPLMPVH 206 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 WLP AHV APTAGSV LAG++LK+GG G +RF+LP+ P P++ L LI+ +++ Sbjct: 207 LWLPEAHVAAPTAGSVLLAGVLLKLGGIGFLRFMLPVVPEFCVSVFPLVSTLCLISFLFS 266 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 +L ++ Q D+KK++AYSSIAHM VT+ IFS + + F M++HGLVS ALF VG+ Sbjct: 267 TLSTLRQIDLKKIVAYSSIAHMSLVTLAIFSQSEFSAYSSSFLMIAHGLVSPALFLIVGI 326 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 +YDR HT+ I + GL +MP + +FT+ N+ P FI E L ++S+F + Sbjct: 327 LYDRAHTKYILYFSGLGASMPIACTLFFLFTLGNLAFPLFPNFIAEVLCLVSIFAVHELL 386 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A + VL+A Y W + +V G+++ D+S E + P+ + ++ G P Sbjct: 387 AYVFCVCQVLAAAYGFWAFNRVAHGIARGP-----SDISRTEFHTILPLLIGVLWLGTKP 441 Query: 470 V 470 + Sbjct: 442 M 442 >gi|68164854|ref|YP_247650.1| NADH dehydrogenase subunit 4 [Cucumis sativus] gi|67511449|emb|CAJ00809.1| NADH dehydrogenase subunit IV [Cucumis sativus] Length = 500 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 154/495 (31%), Positives = 269/495 (54%), Gaps = 13/495 (2%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+ V P ++ F + G ++ + + + + F + F+ Q Sbjct: 5 PWLTTVVVFPIFAGLLLFFFPHRGNKVMRWYTICICVLELLLTTYAFCYH-FELDDPLIQ 63 Query: 64 MIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++E Y WI + Y +G+DG+SI ++LT F+T L++W +++ R + L + Sbjct: 64 LMEDYKWIPFLDFYWEIGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFYFLMLAMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG+F + D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L + Sbjct: 123 SGQIGSFSARDLLLFFIMWEFELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMGV 182 Query: 183 VVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + ++ A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 183 LGIGLYGSNEPTLNFETSANQSYPIALEILFYIGFLIAFAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + L+GI+L+MG YG +R + L P A F+P + + +I IIYA+ S Q ++K Sbjct: 243 YSTCMLLSGILLEMGAYGLVRINMELLPHAHSIFSPWLIIVGIIQIIYAASTSSGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 303 KRIAYSSVSHMGFIIIGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GGL +P+ + +MA++ LPG SGF+ E +V + + + ++ Sbjct: 363 EMGGLAIPIPKIFTTFNILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKMVITLVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSK-CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 + G++L+ +Y L + R++ +G K D RE + I + + GIYP + Sbjct: 423 AIGIILTPIYLLSMLRQMFYGYKLFNAKNSYFFDSGPRELFVAISILIPVIGIGIYPDFV 482 Query: 473 RDTFSVPLSSIIENY 487 + +I+ NY Sbjct: 483 FSLSVDKVEAILSNY 497 >gi|284990233|ref|YP_003408787.1| proton-translocating NADH-quinone oxidoreductase subunit M [Geodermatophilus obscurus DSM 43160] gi|284063478|gb|ADB74416.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geodermatophilus obscurus DSM 43160] Length = 544 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 167/535 (31%), Positives = 281/535 (52%), Gaps = 72/535 (13%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 FL++V LP ++L L R+ G+ + ++++ ++W ++ G + + Sbjct: 2 FLTVVILLPLAVAGLLLVLPRLSG--RAVSGIWMAAASVDLALIGWMWWRYEPGEGASGV 59 Query: 65 IE------YYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF-REYMI 116 ++ WI YH+GVDG+S+ L+ LT L F + W +E+ R + Sbjct: 60 VDGIAYEVDVRWIPTVDAGYHVGVDGLSLPLLALTGVL--FLACAVWSPREEDRPRSFAA 117 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL L++ +G F +LD++LF++FF+ +++ M+ II WG +A KFFLYTF GS+ Sbjct: 118 LFLFLQTACLGTFAALDLILFFVFFDLTIVGMYFIIAGWGHGNARRSALKFFLYTFVGSL 177 Query: 177 FML--FAIVVMCWEKKTSSIIDLYAMSKFPFSIQY-----WMWIAFFCSFAIKIPMFPFH 229 +L F + + E++T D+ A+++ P + +A A+K P+FPFH Sbjct: 178 ALLVGFIGLFLGGEERT---FDMVALAQDPPLADSPVAGGLVLLAIGLGLAVKTPLFPFH 234 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP+AH AP GS LAG++LK+G YG +R +P+ P A Q +A VI L ++++++ Sbjct: 235 TWLPDAHTDAPAPGSAILAGVLLKLGTYGFVRIAMPILPEAWQRWAMVIVVLGVVSVLWG 294 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGI-FSGMKSGVE---------GAMFQMLSHGLV 339 + V++ QTD+K++IAY+S+ HMGYV +G+ +G+ + + GA++QM+SHGL+ Sbjct: 295 AFVALAQTDVKRMIAYTSVNHMGYVLLGLGAAGLVASADQGARTVATVGAVYQMVSHGLL 354 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 + ALF GV++ R T D + GL P +A + V ++GLPG SGFI EF V Sbjct: 355 TGALFLLSGVLWSRGRTYDSGRWSGLARPAPVFAASLAVAAFGSLGLPGLSGFIAEFQVF 414 Query: 400 MSVFQNSNTVAVLASFGVVLSA-LYSLWLYRKVV-------------------------- 432 + VLA G++++A L+ + L R + Sbjct: 415 AGALPAAPVATVLAVVGILVTAGLFLVALQRLLTGPLRVPADHGPSGAATHAGPEPGTVR 474 Query: 433 --------FGVSKCEKVQ-----QLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 G + E+ + + +D+S+RER V P+ L+V G+ P P+ D Sbjct: 475 HPGIGGPDAGTATLERPETETGGRFRDMSVRERTAVVPLLALSVLLGLVPRPLLD 529 >gi|218438090|ref|YP_002376419.1| NAD(P)H-quinone oxidoreductase subunit M [Cyanothece sp. PCC 7424] gi|218170818|gb|ACK69551.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7424] Length = 496 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 160/477 (33%), Positives = 252/477 (52%), Gaps = 24/477 (5%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRR---SFFGVALGISTINFIFSLFVWSVFDKGRS 60 LS + +LP +G ++ F + G R +FF + + F +S+++ + FD Sbjct: 2 LSTLLWLPVVGAAIVGFFPGNLEGAKLRQITAFFAL------LTFGWSIWLLTQFDLTLG 55 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 Q EY WI SY L +DG+S+ L+VL T LT I S + ++ + R Y L Sbjct: 56 GLQFQEYLPWIPQIGLSYSLAIDGLSLPLIVLNTLLTGIAIYSIGEKLERS-RLYYSLIL 114 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++ + GA ++ ++LLF IF+E LIP +++I +WGG +R YA+ KF LYT + +L Sbjct: 115 IINGGISGALMAQNLLLFIIFYELELIPFYLMIAIWGGEKRGYASIKFLLYTAVSGLLVL 174 Query: 180 FAIVVMCW-EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A + + + TS D FP + Q + F IKIP+ P HTWLP+A+ + Sbjct: 175 AAFLGITFLSGGTSFDYDAVNPQNFPLNTQLILLTLILVGFGIKIPLVPLHTWLPDAYTE 234 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A A ++ L GI+ K+G YG IRF L LFP +P + + I++IY +L ++ Q D Sbjct: 235 ASPATAILLGGILAKLGTYGLIRFGLQLFPETWSLISPGLAIIGTISVIYGALSAIAQKD 294 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+++AYSSI HMGY+ + +G + G++ QM+SHGL+ + LF VG++ ++ TRD Sbjct: 295 IKRMVAYSSIGHMGYILVAAAAGTDLSILGSVAQMISHGLILALLFHLVGIVERKVGTRD 354 Query: 359 IFAYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 + GL + +P + +++ MA+ G+PG GF EF+V F +L Sbjct: 355 LDVLNGLMNPIRGLPLTSALLITAGMASAGIPGLVGFAAEFMVFQGSFSTFPIPTLLCIV 414 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV---FFGIYP 469 L+A+Y + L + FG + K L + P VLTV F GI P Sbjct: 415 ASGLTAVYFVILLNRTCFGKLDNQLAYYPKVL----KTETIPALVLTVIILFLGIQP 467 >gi|324329239|gb|ADY24499.1| NADH:ubiquinone oxidoreductase subunit M [Bacillus thuringiensis serovar finitimus YBT-020] Length = 500 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 140/372 (37%), Positives = 231/372 (62%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ +I+ N + + + LVLE ++G F + +++L Sbjct: 86 YELGIDGLSLVMMVLTALLATLAAIAAF-TIKRNLKAFYMLLLVLEIGMLGVFAAQNLML 144 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L V+ + T++I + Sbjct: 145 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITE 204 Query: 197 LYAM---------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + P S+Q+ ++++ +FAIK+P+FP H W+ N H++A A + Sbjct: 205 LKEILTSVGAGGGMAVPNSLQFGLFLSIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 264 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 265 AGVLLKIGAYGIIRFGQGLFPEYFREFATIIAILGVINLLYGAFLALIQTDFRKVLAYSS 324 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL Sbjct: 325 ISHMGIVLMGLGALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAK 384 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L Sbjct: 385 SVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAAGVLGIILTAVYVLRA 444 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 445 TLQVTFGKKEWE 456 >gi|238927260|ref|ZP_04659020.1| possible NADH dehydrogenase (quinone) [Selenomonas flueggei ATCC 43531] gi|238884847|gb|EEQ48485.1| possible NADH dehydrogenase (quinone) [Selenomonas flueggei ATCC 43531] Length = 509 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 151/458 (32%), Positives = 256/458 (55%), Gaps = 23/458 (5%) Query: 46 IFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSW 104 + +LFV++ +D Q EY WI D +Y LGVDGIS+ +++L++ + + SSW Sbjct: 44 LLTLFVYADYDMVLGGMQYTEYMPWITDLGVAYSLGVDGISLPMLLLSSVVGLAAVYSSW 103 Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI--- 161 +++ +EY + L++ + V GAFL D+ F I E +IP ++++ +WG SER+ Sbjct: 104 H-VEKRVKEYFVLLLIVIAGVSGAFLVRDLFFFLILCEMVVIPAYLMVMIWGSSERVTKE 162 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI--IDLYAMS------KFPFSIQYWMWI 213 +AA K ++ GS FML ++++ S + D A++ + +Q ++ Sbjct: 163 HAAMKMTIFLLVGSAFMLVGVLLLYVSAYESGMRTFDFEALTAAAIAGHISWEVQVTAFL 222 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 F + MFP H W P+ + APTA S+ AG++ K+GGY IR L + PL +++ Sbjct: 223 LLLVGFGSHLSMFPMHIWSPDGYAGAPTAISMINAGVLKKIGGYALIRVGLFILPLGAKF 282 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 +AP+I L+ I +IYAS +++ Q DIK +IAYSSI+HMGYV +G + V GA+ M Sbjct: 283 WAPLIAILATINVIYASYIALAQRDIKYMIAYSSISHMGYVLLGFAALNVVSVGGAVAYM 342 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG++ + F VG +Y++ R + GL H MP V M+ + ++GLPG GF+ Sbjct: 343 VAHGIMLALFFSQVGYVYEKTELRRVGDLWGLAHYMPHITVGFMLAGLCSLGLPGLIGFV 402 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EF + + + + V+A G++ +A Y L + +V+FG K E+ + D + Sbjct: 403 PEFTIFVGTVEAYPILTVIAVSGIIFTAFYVLRMLARVLFG-PKVERFAKYPD---ERKI 458 Query: 454 MVYPIAVLTVF---FGIYP---VPIRDTFSVPLSSIIE 485 + P+ VL VF FG++P + + D + PL+ ++E Sbjct: 459 DIVPLVVLGVFLVGFGVFPGLLMGMVDAGTAPLAPLLE 496 >gi|119509592|ref|ZP_01628739.1| NADH dehydrogenase subunit M [Nodularia spumigena CCY9414] gi|119465781|gb|EAW46671.1| NADH dehydrogenase subunit M [Nodularia spumigena CCY9414] Length = 500 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 176/469 (37%), Positives = 269/469 (57%), Gaps = 8/469 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + LP G +I F G+ S VAL + + F+++ + F+ ++ Q Sbjct: 2 LSALILLPLFGAALIGFWPAQMSGKLSRR-VALLFAILIFLWTGLLAIKFNPAEANQQFA 60 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E+ WID +Y+LG+DG+S+ L+VL LT I SS +S+Q R Y L+L + Sbjct: 61 EFIPWIDSLGLNYNLGIDGLSLPLLVLNGLLTCIAIYSSDESLQRP-RFYYSLILLLCAG 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V GAFL+ D+LLF++F+E LIP++++I +WGG+ R YAA KF +YT I +L + + Sbjct: 120 VTGAFLAQDLLLFFLFYELELIPLYLLIAIWGGTRRSYAATKFMIYTAVSGILILASFLG 179 Query: 185 MCWEKKTSS-IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M W +SS ++ S + Q + F IKIP+ PFHTWLP+AHV+A T Sbjct: 180 MVWLSGSSSFALETLDTSTLSLTTQLLLLGGILVGFGIKIPLVPFHTWLPDAHVEASTPI 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LAG++LK+G YG +RF + L P A Y AP + ++I++++ S ++ QTD+KK++ Sbjct: 240 SVLLAGVLLKLGTYGLLRFGMNLLPEAWTYLAPWLATWAVISVLFGSSCAIAQTDMKKMV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI HMGYV + + GA+ QM+SHGL+S+ LF VGV+Y + +RD+ Sbjct: 300 AYSSIGHMGYVLLAAAAATPLSTLGAVMQMISHGLISALLFLLVGVVYKKAGSRDLDVIK 359 Query: 364 GLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL++ +P +M++ MA+ G+PG GFI EF+V + +++ G L+ Sbjct: 360 GLLNPERGLPVIGSLMVLGVMASAGVPGMVGFISEFIVFRGSYPVFPVQTLISMIGTGLT 419 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A+Y L L + FG +V L + +R +AVL V FGI P Sbjct: 420 AVYFLILMDRAFFG-RLSAQVTNLPRVFWSDRIPAVILAVLIVIFGIQP 467 >gi|15810688|gb|AAL08598.1|AF302933_10 NADH dehydrogenase subunit 4 [Neoceratodus forsteri] Length = 473 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 145/385 (37%), Positives = 221/385 (57%), Gaps = 11/385 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 LGVD +S L+VLT +L P IL+S K I R Y+ + L++ +I AF + ++ Sbjct: 57 LGVDPLSAPLLVLTCWLLPLMILASQKHIMPEPIARQRTYLTLMISLQTFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFY+ FEA+LIP +II WG +ER++A F YT GS+ +L AI++M + T S Sbjct: 117 ILFYVMFEATLIPTLIIITRWGNQTERLHAGTYFLFYTLTGSLPLLVAILIMHKDIGTMS 176 Query: 194 IIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L P F+ + W W A +F IK+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MLLLQYAQPLPMNTFADKIW-WAACLIAFLIKMPLYGVHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL P I L+L +I S + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMIIMLNPLTKDLAYPFII-LALWGVIMTSSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI + G GA+ M++HGL+SS LF Y+R+H+R + G+ +P Sbjct: 295 MGLVIAGILTQTPWGFTGAIILMIAHGLISSLLFCLANANYERVHSRTLLLARGMQIILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + +AN+ LP T +GE ++I S+F SN +L G +++A YSL+++ Sbjct: 355 LMGTWWFLANLANLALPPTPNLMGELIIITSMFNWSNWTMILTGLGTMITACYSLYMFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G + V ++ RE +V Sbjct: 415 TQRGQTPQHTV-AIEPTHTREHLLV 438 >gi|167468608|ref|ZP_02333312.1| NADH-quinone oxidoreductase, M subunit [Yersinia pestis FV-1] Length = 326 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 120/280 (42%), Positives = 187/280 (66%), Gaps = 2/280 (0%) Query: 206 SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 +++Y + + FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LP Sbjct: 34 NVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLP 93 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 LFP AS FAP+ +L +I I Y + ++ QTDIK+LIAY+S++HMG+V I I++G + Sbjct: 94 LFPNASHEFAPIAMWLGVIGIFYGAWMAFCQTDIKRLIAYTSVSHMGFVLIAIYTGSQLA 153 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 +GA+ QM++HGL ++ +F G +Y+RLHTRD+ GGL + + + F +A +G Sbjct: 154 YQGAVIQMIAHGLSAAGMFIICGQLYERLHTRDMRQMGGLWGRIKYLPALSLFFAVATLG 213 Query: 386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 +PGT F+GEF+++ FQ + V+A+FG+V +++YSL + ++ +G K E+ L Sbjct: 214 MPGTGNFVGEFMILFGSFQVVPVITVIATFGLVFASVYSLIMMQRAYYGTPKSEEA--LP 271 Query: 446 DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 ++ RE +V + VL V G+YP PI DT +S++ + Sbjct: 272 GMTARELSIVLLLVVLLVLLGVYPQPILDTSHAAMSNVQQ 311 >gi|94268126|ref|ZP_01291098.1| Proton-translocating NADH-quinone oxidoreductase, chain M [delta proteobacterium MLMS-1] gi|93451725|gb|EAT02496.1| Proton-translocating NADH-quinone oxidoreductase, chain M [delta proteobacterium MLMS-1] Length = 282 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 118/272 (43%), Positives = 178/272 (65%) Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 IK+PMFPFHTWLP AHV+APTAGSV LA ++LKMG YG +RF LP+ P A+ F P I + Sbjct: 1 IKVPMFPFHTWLPAAHVEAPTAGSVILASVLLKMGTYGFLRFCLPITPEATHIFMPYILW 60 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LS+I I+Y ++ Q D+KKLIAYSS+ HMG+VT+GIF G++GA+ QM++HG+ + Sbjct: 61 LSIIGILYGGFTALAQQDMKKLIAYSSVGHMGFVTLGIFVLNSQGIQGAILQMINHGITT 120 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 ALFFCVG++Y+R H+R++ G+ MP Y + + F ++++ PGT+ FIGEF+++ Sbjct: 121 GALFFCVGMLYERTHSRELALNAGVGRFMPIYVLFLGFFALSSLAFPGTNSFIGEFMILA 180 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460 F S +A A G VL+A Y L ++VV+G + + + L DL+LRE ++ P+ + Sbjct: 181 GSFSYSIIIAAFAIPGAVLAAAYMFRLLQRVVWGGTDNPEHRGLLDLNLREVVVLAPLLL 240 Query: 461 LTVFFGIYPVPIRDTFSVPLSSIIENYTLKTG 492 + G+ P P + V ++ ++ G Sbjct: 241 FVFWIGLSPAPFLEVMEVSVAHLLTQVGATEG 272 >gi|296505718|ref|YP_003667418.1| NADH dehydrogenase subunit M [Bacillus thuringiensis BMB171] gi|296326770|gb|ADH09698.1| NADH dehydrogenase subunit M [Bacillus thuringiensis BMB171] Length = 500 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 231/372 (62%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 86 YELGIDGLSLVMMVLTALLATLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 144 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 145 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 204 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 205 LKEILRSVNAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 264 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 265 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 324 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL Sbjct: 325 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAK 384 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 385 SVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 444 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 445 TLQVTFGKKEWE 456 >gi|206970012|ref|ZP_03230965.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus AH1134] gi|206734589|gb|EDZ51758.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus AH1134] Length = 500 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 231/372 (62%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 86 YELGIDGLSLVMMVLTALLATLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 144 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 145 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 204 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 205 LKEILRSVSAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 264 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP Q A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 265 AGVLLKIGAYGIIRFGKGLFPEYFQDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 324 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL Sbjct: 325 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITVLGGLAK 384 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 385 SVPILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 444 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 445 TLQVTFGKKEWE 456 >gi|229153455|ref|ZP_04281633.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus m1550] gi|228630059|gb|EEK86710.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus m1550] Length = 497 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 231/372 (62%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 83 YELGIDGLSLVMMVLTALLATLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 141 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 142 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 201 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 202 LKEILRSVNAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 261 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 262 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 321 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL Sbjct: 322 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAK 381 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 382 SVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 441 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 442 TLQVTFGKKEWE 453 >gi|297201683|ref|ZP_06919080.1| NADH dehydrogenase subunit I M [Streptomyces sviceus ATCC 29083] gi|197710944|gb|EDY54978.1| NADH dehydrogenase subunit I M [Streptomyces sviceus ATCC 29083] Length = 524 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 174/494 (35%), Positives = 264/494 (53%), Gaps = 30/494 (6%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVAL--GISTINFIF--SLFVWSVFDKGR- 59 L+ V P LG L + G +S L G++ I ++ + FD Sbjct: 12 LLAFVVAGPLLGAVTALLPAPPGLKGKSPDQAVLRHGVTVTGVILIAAIVLALGFDHDHP 71 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF--REYMI 116 S Q WI HLG+DGIS+ L+VLT LT C L S+ + + ++ Sbjct: 72 SKMQATTDISWIPALDVRIHLGIDGISLPLLVLTALLTFLCALYSYFKMPSGPTPKAFVA 131 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LVLES + F LD+LLF++ FE LIPM+ +I WGG++R AA++F LYT GS+ Sbjct: 132 LLLVLESGTLATFAVLDLLLFFLAFETVLIPMYFLIARWGGADRQAAAWRFILYTLLGSV 191 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 ML ++++ + T ++ L + S+Q +A A+K PM+P H+WLP+ Sbjct: 192 VMLLGLLLIGIKAGTFDMVALATDNGRSLTTSVQVIAVLAIGIGLAVKTPMWPLHSWLPD 251 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH APT GSV LAG++LKMG YG +R LLP+ P + FAP + +++ IIY SLV + Sbjct: 252 AHTAAPTVGSVLLAGVLLKMGTYGFVRILLPIAPDGFRDFAPYLAAFAVVGIIYGSLVCL 311 Query: 295 ------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ LFF VG Sbjct: 312 ALAKRGAKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGLLFFLVG 371 Query: 349 VIYDRLHTRDIFAY-----GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 + DR T D+ L PR ++ +A++GLPG +GF GE L + F Sbjct: 372 ALKDRTGTTDLDTLAEETGAALYGKAPRLGGLLAFGAVASLGLPGLAGFWGEMLALFGAF 431 Query: 404 QNSNTVA--------VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + ++ ++ + +FG +L+A Y L + R+V G + + QL D+ E Sbjct: 432 KPADDLSRPAFLTFMAIGAFGTLLTAAYMLVVVRRVCMG-AVPQDAPQLADVHTYEFAAW 490 Query: 456 YPIAVLTVFFGIYP 469 P+ LTV G++P Sbjct: 491 TPLVALTVVAGLWP 504 >gi|229130542|ref|ZP_04259498.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus BDRD-Cer4] gi|228652881|gb|EEL08763.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus BDRD-Cer4] Length = 496 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 231/372 (62%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 82 YELGIDGLSLVMMVLTALLATLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 141 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 200 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 201 LKEILRSVNAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 260 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 261 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 320 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL Sbjct: 321 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAK 380 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 381 SVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 440 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 441 TLQVTFGKKEWE 452 >gi|197107606|gb|ACH42383.1| NADH dehydrogenase subunit 4 [Saccorhiza polyschides] Length = 246 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 126/245 (51%), Positives = 173/245 (70%), Gaps = 6/245 (2%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 ++LTT + P C+L+SW + + Y+I FL +E +++ F +LD+L FYIFFEA LIPM Sbjct: 4 ILLTTLIFPLCLLASWSFEKGEVKTYLICFLSMELVLLLVFTNLDLLFFYIFFEAILIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS- 206 F++IG++G +R I AAY FFLYT GS+FML ++ + ++ + A+S FS Sbjct: 64 FLVIGIYGSRQRKIRAAYMFFLYTLLGSLFMLVGVIYIYLFAGST---NYEALSVIGFSH 120 Query: 207 -IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L Sbjct: 121 YDQKWLWLAFFSSFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLG 180 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 LFPLAS YF P IF LS+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G G Sbjct: 181 LFPLASVYFTPFIFSLSVFGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIG 240 Query: 326 VEGAM 330 +E A+ Sbjct: 241 IEAAI 245 >gi|87302493|ref|ZP_01085310.1| NADH dehydrogenase I chain 4 (or M) [Synechococcus sp. WH 5701] gi|87282837|gb|EAQ74794.1| NADH dehydrogenase I chain 4 (or M) [Synechococcus sp. WH 5701] Length = 508 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 164/480 (34%), Positives = 262/480 (54%), Gaps = 19/480 (3%) Query: 6 LSIVTFLPFLGVFV-ILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS++ +PF+G V +L+ GR +AL + + +SL V S FD S+ Q+ Sbjct: 2 LSLLLLIPFMGALVLVLWPGQPTPGR--LRTIALVVLALQLGWSLVVLSRFDPSNSAMQL 59 Query: 65 IEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 E + W+ + Y LGVDG+S+ LV++ LT + + + I + R Y LV+ Sbjct: 60 QEAHQWVGNIGLDYKLGVDGLSLPLVLINGALTLVSAICT-RDISQRPRIYFALLLVISG 118 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 V GAFL+ ++LLF++F+E LIP++++I +WGG+ R YAA KF ++T + +L A + Sbjct: 119 AVNGAFLAENLLLFFLFYELELIPLWLLISIWGGANRAYAATKFLIFTAVSGMLILGAFL 178 Query: 184 VMC-WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + + + + Q + + F IK+P+FPFH WLP+AH QA T Sbjct: 179 GLALFTGSVDFSLTPITSERLALGSQLLLLGSLLVGFGIKVPLFPFHNWLPDAHTQASTP 238 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 SV LAG++LK+G YG +RF L LFP A AP + + +++++ SL ++ Q D+K++ Sbjct: 239 VSVLLAGVLLKLGTYGILRFCLGLFPEAWAVLAPGLAIWAAVSVLFGSLAAIAQQDMKRM 298 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 +AYSS+ HMGY+ + + + GA FQM+SHGL+S+ LF VG +Y + TRD+ Sbjct: 299 VAYSSVGHMGYILLAAAAATPVAILGATFQMVSHGLISALLFLLVGTVYRKTGTRDLTVL 358 Query: 363 GGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL++ +P +M++ MA+ G+PG SGFI EFLV +L G L Sbjct: 359 HGLLNPERGLPFTGTLMILGVMASAGMPGMSGFISEFLVFRGSIVAYPLATLLGIVGSGL 418 Query: 420 SALYSLWLYRKVVFG----------VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +A+Y L L + FG V+ +L +++ RE +A+ V G+ P Sbjct: 419 TAVYFLLLVNRAFFGRLAITPAADPVADQRLDVRLAEVAPRETIPATALAIAVVMIGLLP 478 >gi|229050962|ref|ZP_04194512.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus AH676] gi|228722420|gb|EEL73815.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus AH676] Length = 496 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 231/372 (62%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 82 YELGIDGLSLVMMVLTALLATLATIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 141 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 200 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 201 LKEILRSVNAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 260 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 261 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 320 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL Sbjct: 321 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAK 380 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 381 SVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 440 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 441 TLQVTFGKKEWE 452 >gi|228961554|ref|ZP_04123164.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar pakistani str. T13001] gi|229112703|ref|ZP_04242239.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock1-15] gi|229147831|ref|ZP_04276173.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus BDRD-ST24] gi|228635659|gb|EEK92147.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus BDRD-ST24] gi|228670835|gb|EEL26143.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock1-15] gi|228798172|gb|EEM45175.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar pakistani str. T13001] Length = 496 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 231/372 (62%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 82 YELGIDGLSLVMMVLTALLATLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 141 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 200 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 201 LKEILRSVNAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 260 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 261 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 320 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL Sbjct: 321 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAK 380 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 381 SVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 440 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 441 TLQVTFGKKEWE 452 >gi|306411049|gb|ADM86130.1| NADH dehydrogenase subunit 4 [Onoseris onoseroides] Length = 500 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 157/496 (31%), Positives = 264/496 (53%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSLIFFLPH--KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 63 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K P+ P Sbjct: 182 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPILPXXXXXXXXXXXX 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +YSL + R++ +G + D RE + I + + G+YP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYKLFNTANSYVFDSGPRELFVSISIFLPVIGIGMYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VLSLSVDKVEGILSNY 497 >gi|302543399|ref|ZP_07295741.1| NADH-quinone oxidoreductase, M subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461017|gb|EFL24110.1| NADH-quinone oxidoreductase, M subunit [Streptomyces himastatinicus ATCC 53653] Length = 530 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 163/467 (34%), Positives = 244/467 (52%), Gaps = 51/467 (10%) Query: 55 FDKGRSS-FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF- 111 FD GR Q WI HLGVDG+S+ L+VLT LT C L S+ + Sbjct: 46 FDHGRPGVMQAQTDISWIPALDIRIHLGVDGVSLPLLVLTALLTFLCALYSYYKMPAGGS 105 Query: 112 ----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKF 167 + ++ L+LE + +F LD++LF++ FE +LIPM+ +I WGG+ER AA++F Sbjct: 106 TPSPKGFVSLLLLLEGGTLASFAVLDLMLFFLAFEMTLIPMYFLINRWGGAERERAAWRF 165 Query: 168 FLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPM 225 LYT GS+ ML ++++ + T ++ L + +K + Q +A A+K PM Sbjct: 166 ILYTLLGSVVMLLGLLLVGVKGGTFDMVALASDNGAKLTHTTQLIAALALIVGLAVKAPM 225 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 +P H+WLP+AH APT GSV LAG++LKMG YG +R +LP+ P + +AP + +++ Sbjct: 226 WPLHSWLPDAHTAAPTVGSVLLAGVLLKMGTYGLVRIVLPMVPEGAHTYAPYLAAFAVVG 285 Query: 286 IIYASLV----------------------SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMK 323 IIY S S D+K+LIAYSS+ HMG+V +GI + Sbjct: 286 IIYGSFACLALALPSPTTTLNGGSALFNRSGAGGDLKRLIAYSSVGHMGFVLLGIATLTP 345 Query: 324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMV 378 +GV GA+F ++HGL++ LFF VG + DR T D+ G L PR ++ Sbjct: 346 TGVNGALFANIAHGLITGLLFFLVGALKDRSGTTDLDQLSGISGAALYGRAPRLGGLLAF 405 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSN--------TVAVLASFGVVLSALYSLWLYRK 430 +A++GLPG +GF GE L + F+ ++ T LA FG +L+A Y L + R+ Sbjct: 406 GAVASLGLPGLAGFWGEMLAMFGAFEPADGLSRPAYLTYMALAGFGTLLTAAYMLIVVRR 465 Query: 431 VVFGVSKCEKVQQ-------LKDLSLRERCMVYPIAVLTVFFGIYPV 470 V G E + L D+ E P+ LTV G++P Sbjct: 466 VCMGDHPVEPGAEHGAPRPALADVHGYEFAAWSPLVALTVLAGLWPA 512 >gi|30023324|ref|NP_834955.1| NADH dehydrogenase subunit M [Bacillus cereus ATCC 14579] gi|29898885|gb|AAP12156.1| NADH-quinone oxidoreductase chain M [Bacillus cereus ATCC 14579] Length = 500 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 231/372 (62%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 86 YELGIDGLSLVMMVLTALLATLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 144 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 145 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 204 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 205 LKEILRSVNAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 264 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 265 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 324 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL Sbjct: 325 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAK 384 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 385 SVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 444 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 445 TLQVTFGKKEWE 456 >gi|118480333|ref|YP_897484.1| NADH dehydrogenase subunit M [Bacillus thuringiensis str. Al Hakam] gi|196036334|ref|ZP_03103732.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus W] gi|196045596|ref|ZP_03112826.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus 03BB108] gi|218906468|ref|YP_002454302.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus AH820] gi|225867268|ref|YP_002752646.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus 03BB102] gi|118419558|gb|ABK87977.1| NADH dehydrogenase subunit M [Bacillus thuringiensis str. Al Hakam] gi|195991126|gb|EDX55096.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus W] gi|196023427|gb|EDX62104.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus 03BB108] gi|218538325|gb|ACK90723.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus AH820] gi|225790550|gb|ACO30767.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus 03BB102] Length = 500 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 150/425 (35%), Positives = 250/425 (58%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + GR E WI + F + Y LG+DG Sbjct: 33 ALGLFGTVLPFGMAIVLACTYASGRDLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 92 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 93 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 151 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK- 202 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 152 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILAS 211 Query: 203 --------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 212 VGAGGGMVVPSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 271 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 272 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 331 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++P + Sbjct: 332 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSG 391 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 392 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAAGVLGIILTAVYVLRATLQVTFG 451 Query: 435 VSKCE 439 + E Sbjct: 452 KKEWE 456 >gi|228936575|ref|ZP_04099370.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823090|gb|EEM68927.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 497 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 150/425 (35%), Positives = 250/425 (58%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + GR E WI + F + Y LG+DG Sbjct: 30 ALGLFGTVLPFGMAIVLACTYASGRDLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 89 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 90 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMMLLMLEIGMLGVFAAQNLMLFFIFFEI 148 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK- 202 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 149 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILAS 208 Query: 203 --------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 209 VGAGGGMVVPSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 268 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 269 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 328 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++P + Sbjct: 329 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSG 388 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 389 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAAGVLGIILTAVYVLRATLQVTFG 448 Query: 435 VSKCE 439 + E Sbjct: 449 KKEWE 453 >gi|229118787|ref|ZP_04248137.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock1-3] gi|228664657|gb|EEL20149.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock1-3] Length = 495 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 155/430 (36%), Positives = 250/430 (58%), Gaps = 30/430 (6%) Query: 32 SFFGVAL--GISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YH 78 FG AL GI+T+ + + G+S E WI + F + Y Sbjct: 30 GLFGTALPFGIATV-------LACTYASGKSLSLFDEKVKWIKFGDFAAVDKRWFSIYYE 82 Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++LF+ Sbjct: 83 LGIDGLSLVMMVLTALLAMLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAKNLMLFF 141 Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I L Sbjct: 142 IFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIAALK 201 Query: 199 AM---------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + P SIQ ++IA +FAIK+P+FP H W+ N H++A A + AG Sbjct: 202 EILTGVSAGGGQIVPSSIQLGVFIAIMIAFAIKLPIFPLHRWMVNVHIEAHPAVVMLHAG 261 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+ Sbjct: 262 VLLKIGAYGMIRFGKGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSIS 321 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++ Sbjct: 322 HMGIVLMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSV 381 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 382 PILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVLGIILTAVYVLRATL 441 Query: 430 KVVFGVSKCE 439 +V FG + E Sbjct: 442 QVTFGKKEWE 451 >gi|262400767|gb|ACY66256.1| NADH dehydrogenase subunit 4 [Brassica napus] Length = 506 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 161/501 (32%), Positives = 276/501 (55%), Gaps = 21/501 (4%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L+I+ P ++LF + G ++ + + I + F ++ F Sbjct: 9 DFPWLTIIVVFPISAGSLMLFLPHRGNKVNKWYTICICILELLLTTYAFCYN-FKLDDPL 67 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI+ F Y LG+DG+SI ++LT F+T L+++ +++ R + L Sbjct: 68 IQLSEDYKWINLFDFYWRLGIDGLSIGTILLTGFITTLATLAAFPVTRDS-RLFYFLMLA 126 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 127 MYSGQIGSFSSRDILLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLI 186 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + + + + ++L +P +++ +I F +FA+K P+ P HTWLP+ H + Sbjct: 187 GVLGISLYGSNEPTLNLELLGNQAYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGE 246 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + L P A F+P + + I IIYA+ S Q + Sbjct: 247 AHYSTCMLLAGILLKMGAYGLVRINMELLPHAHSMFSPWLMVVGTIQIIYAASTSPGQRN 306 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 307 LKKRIAYSSVSHMGFIIIGIGSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 366 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ ++P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 367 LDEMGGMAISIPKIFTMFTILSMASLALPGMSGFVAELIVFFGIITSQKYFLISKILIIF 426 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL-----RERCMVYPIAVLTVFFG 466 + + G++L+ +Y L + R++ +G K+ K+ S RE + I + + G Sbjct: 427 VMAIGMILTPIYLLSMSRQMFYGY----KLINAKNFSFFDSGPRELFLSISILLPIIGIG 482 Query: 467 IYPVPIRDTFSVPLSSIIENY 487 IYP + S + SI+ NY Sbjct: 483 IYPDFVLSLASDKVESILSNY 503 >gi|170078412|ref|YP_001735050.1| NADH dehydrogenase subunit D4 [Synechococcus sp. PCC 7002] gi|22651992|gb|AAN03543.1|AF381038_2 NADH dehydrogenase subunit D4 [Synechococcus sp. PCC 7002] gi|169886081|gb|ACA99794.1| NADH dehydrogenase subunit D4 [Synechococcus sp. PCC 7002] Length = 493 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 165/472 (34%), Positives = 267/472 (56%), Gaps = 14/472 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFG--VALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS + +LP G ++ + L G ++ F +ALG + + F+++ ++ +D + Q Sbjct: 2 LSALIWLPLAGALLV---AILPQGEKNQFSRTMALGAAALVFVWTAWLGFHYDVAIAGLQ 58 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E+Y WI++ +Y LGVDG+S+ L+ L LT + S K + R Y FL+L+ Sbjct: 59 FVEHYLWIEWLGLNYDLGVDGLSLPLLALNALLTLVALWISPKDLHRP-RFYYALFLLLQ 117 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + V GAFL+ D+LLF++F+E +IP++ +I +WGG +R YAA KF LYT I +L + Sbjct: 118 ASVNGAFLAQDVLLFFLFYEIEIIPLYFLIAIWGGKKRGYAAIKFLLYTAVSGILILASF 177 Query: 183 VVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + E T + L++ P + Q + F IKIP PFHTWLP+AHV+A Sbjct: 178 LGLAFLTESNTFAYSALHS-DLLPLTTQLILLGGILVGFGIKIPFLPFHTWLPDAHVEAS 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T SV LAG++LK+G YG ++F + LFPLA AP + + I+ +Y + ++ Q D+K Sbjct: 237 TPVSVILAGVLLKVGTYGLLKFGIGLFPLAWAVVAPWLAIWAAISALYGASCAIAQKDMK 296 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K++AYSSIAHM ++ + + + A QM+SHGL+S LF VG++Y + +RD+ Sbjct: 297 KVVAYSSIAHMAFILLAAAAATPLSLAAAEIQMVSHGLISGLLFLLVGIVYKKTGSRDVD 356 Query: 361 AYGGLV---HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 GL+ +P +M++ MA+ GLPG +GFI EFL+ F +L G Sbjct: 357 YLRGLLTPERGLPLTGSLMILGVMASAGLPGMAGFIAEFLIFRGSFPVYPVATLLCMVGT 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+A+Y L + KV FG E + + ++ ++ + +L FG+ P Sbjct: 417 GLTAVYFLLMINKVFFGRLTPELI-NMSPVNWADQFPAVMLVILLFVFGLQP 467 >gi|228917900|ref|ZP_04081436.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228949011|ref|ZP_04111284.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124794|ref|ZP_04253973.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus 95/8201] gi|228658669|gb|EEL14330.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus 95/8201] gi|228810767|gb|EEM57115.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228841697|gb|EEM86808.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 497 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 150/425 (35%), Positives = 250/425 (58%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + GR E WI + F + Y LG+DG Sbjct: 30 ALGLFGTVLPFGMAIVLACTYASGRDLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 89 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 90 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 148 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK- 202 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 149 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILAS 208 Query: 203 --------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 209 VGAGGGMVVPSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 268 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 269 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 328 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++P + Sbjct: 329 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSG 388 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 389 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAAGVLGIILTAVYVLRATLQVTFG 448 Query: 435 VSKCE 439 + E Sbjct: 449 KKEWE 453 >gi|229187516|ref|ZP_04314657.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus BGSC 6E1] gi|228595955|gb|EEK53634.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus BGSC 6E1] Length = 497 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 150/425 (35%), Positives = 250/425 (58%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + GR E WI + F + Y LG+DG Sbjct: 30 ALGLFGTVLPFGMAIVLACTYASGRDLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 89 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 90 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 148 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK- 202 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 149 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILAS 208 Query: 203 --------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 209 VGAGGGMVVPSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 268 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 269 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 328 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++P + Sbjct: 329 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSG 388 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 389 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAAGVLGIILTAVYVLRATLQVTFG 448 Query: 435 VSKCE 439 + E Sbjct: 449 KKEWE 453 >gi|323148883|ref|YP_004221975.1| NADH-plastoquinone oxidoreductase subunit 4 [Erodium carvifolium] gi|316926347|gb|ADU58200.1| NADH-plastoquinone oxidoreductase subunit 4 [Erodium carvifolium] Length = 504 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 145/418 (34%), Positives = 240/418 (57%), Gaps = 12/418 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI +F + LGVDG+S+ V+LT F+T L++W + R + L + Sbjct: 63 QLVEAYKWIHFFQFDWRLGVDGLSLGPVLLTGFITTLATLAAWP-VTRTPRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT S+F+L Sbjct: 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSLWGGKNRLYSATKFLLYTAGSSLFLLIG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + + ++ A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLFGSNEPTFNFEISAHQSYPAALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + P A +P + + I I+YA+ S+ Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMEFLPHAHSMLSPYLITVGAIQIVYAASTSLGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGIFS +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 302 KKRIAYSSVSHMGFIIIGIFSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVSF 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV---AVLASF- 415 GG+ +P+ + + +MA++ LPG SGF+ E +V + + + +L +F Sbjct: 362 DKMGGMAIAIPKVFTMFSILSMASLALPGMSGFVAELIVFFGIITSPKLLLMPRILITFG 421 Query: 416 ---GVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 422 MAVGMILTPIYSLSMLRQMFYGYRLLNVPTPPFFDSGPRELFVSISILLPVIGVGIYP 479 >gi|228930297|ref|ZP_04093303.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829356|gb|EEM74987.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 497 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 140/372 (37%), Positives = 231/372 (62%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++L Sbjct: 83 YELGIDGLSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 141 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L V+ + T++I + Sbjct: 142 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITE 201 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + Sbjct: 202 LKEILASVGAGGGMVVPSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 261 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 262 AGVLLKIGAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 321 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL Sbjct: 322 ISHMGIVLMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAK 381 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L Sbjct: 382 SVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAAGVLGIILTAVYVLRA 441 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 442 TLQVTFGKKEWE 453 >gi|309322038|ref|YP_003935025.1| NADH dehydrogenase subunit 4 [Candida salmanticensis] gi|308746515|gb|ADO51049.1| NADH dehydrogenase subunit 4 [Candida salmanticensis] Length = 499 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 128/329 (38%), Positives = 203/329 (61%), Gaps = 16/329 (4%) Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT 191 +D+ FYIFFEA+LIP++++I ++G + R AAY +YT GS+ ML + +CW T Sbjct: 144 IDLYYFYIFFEATLIPLYILITIYGSNNRKQAAYYILMYTLLGSLCMLIS---LCW---T 197 Query: 192 SSIID---LYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++IID + + K+ IQ+ +WI F + +K P+ P HTWLP H ++P AGS+ Sbjct: 198 NAIIDDSTFFLIYKYIPSLDIQFILWILLFIAIMVKSPILPLHTWLPLVHSESPLAGSIL 257 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAGI+LK+ Y IR++LP P S F P +F + L+ II S ++M+Q D+K ++AYS Sbjct: 258 LAGIVLKLTVYLIIRWILPFLPEISLLFTPFVFTICLLTIILISFITMIQNDLKVIVAYS 317 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGL 365 S++HM +GIFS +G+EG+ L+HGLVS ALF V G++YDR HTR I+ Y GL Sbjct: 318 SVSHMSVCILGIFSNSLAGIEGSYLLGLAHGLVSPALFIAVGGILYDRFHTRIIYYYNGL 377 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 + MP ++ +++ + AN+G P + FIGEFL + F N+ + ++ + LSA Y + Sbjct: 378 LSIMPYFSFYLIIISFANIGTPLSLNFIGEFLSLFGAFNNNFILGIICISSIFLSATYQM 437 Query: 426 WLYRKVVFGVSK----CEKVQQLKDLSLR 450 + K+ G++ + +++ +SL Sbjct: 438 KITNKITGGINSYIFTNNDITKVESISLN 466 >gi|86553032|gb|ABC98212.1| NADH dehydrogenase subunit 4 [Chlamydomonas incerta] Length = 443 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 155/425 (36%), Positives = 243/425 (57%), Gaps = 28/425 (6%) Query: 50 FVWSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTTFLTPFCILSSWKSI 107 ++W FD QM+ HL G+DG+++ L++LTT L P C++ + Sbjct: 42 WMWWNFDASGHGLQMLAILG------RSHLAFGIDGVALSLMLLTTILFPICMM-----L 90 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG--VWGGSERIYAAY 165 +M F++LE +V+ A LD+L FYI FEASLI +F++IG +G E AAY Sbjct: 91 LRTVAGFM-TFILLEVLVLSALCVLDLLGFYILFEASLILLFLLIGRATYGSLE---AAY 146 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPM 225 K LYT GS+ +L + ++ E T++++ + S ++ W +A A+KIP+ Sbjct: 147 KIVLYTMAGSLVLLPTLFMIYSECGTTNVLYMTCASNHQ-TVLGWGLLAVL---AVKIPL 202 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 P H WLP AHV APTAGSV LAG++LK+GG G +RF+LP+ P P++ L L++ Sbjct: 203 MPVHLWLPEAHVAAPTAGSVLLAGVLLKLGGIGFLRFMLPVVPEFCVSVFPLVSTLCLVS 262 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 ++++L ++ Q D+KK++AYSSIAHM VT+ IFS + + F M++HGL+S ALF Sbjct: 263 FLFSTLSTLRQIDLKKIVAYSSIAHMSMVTLAIFSQSEFSAYSSSFLMIAHGLISPALFL 322 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 VG++YDR HT+ I + GL +MP + + +FT+ N+ P FI E L ++S+F Sbjct: 323 IVGILYDRAHTKFILYFSGLGASMPIGSTLFFLFTLGNLAFPLFPNFIAEVLCLVSIFAV 382 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 +A + VL A Y W + +VV G+ + D++ E V P+ +V+ Sbjct: 383 HELLAYVFCVCQVLGAAYGFWAFNRVVHGLPRGP-----ADVTRTEFHTVLPLLNGSVWL 437 Query: 466 GIYPV 470 G+ P+ Sbjct: 438 GVKPM 442 >gi|197107598|gb|ACH42379.1| NADH dehydrogenase subunit 4 [Phyllospora comosa] Length = 246 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 126/243 (51%), Positives = 172/243 (70%), Gaps = 2/243 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 V+LTT + P C+LSSW + + + Y I+FL +E +++ F SLD+L FYIFFEA LIPM Sbjct: 4 VLLTTLIFPLCLLSSWTFEKGDLKTYPISFLSMELVLLLVFTSLDLLFFYIFFEAILIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG++G +R I AAY FFLYT GS+FML ++ + ++S ++ + KF Sbjct: 64 FLVIGIYGSRQRKIRAAYMFFLYTLVGSLFMLIGVIYIYLFVGSTSY-EVLSTIKFSGYN 122 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 123 QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 182 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P A YF P IF LS++ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+ GVE Sbjct: 183 PEACVYFTPFIFSLSVLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTNTIIGVE 242 Query: 328 GAM 330 A+ Sbjct: 243 AAI 245 >gi|229032922|ref|ZP_04188877.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus AH1271] gi|228728467|gb|EEL79488.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus AH1271] Length = 497 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 148/423 (34%), Positives = 250/423 (59%), Gaps = 23/423 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + G+S E WI + F + Y LG+DG Sbjct: 30 ALGLFGTALPFGIAIVLACTYASGKSLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 89 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 90 LSLVMMVLTALLAILAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 148 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK- 202 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 149 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILTS 208 Query: 203 --------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 209 VGAGGGIIVSSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 268 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 269 GAYGMIRFGKGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 328 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++P + Sbjct: 329 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSG 388 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L +V FG Sbjct: 389 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVLGIILTAVYVLRATLQVTFG 448 Query: 435 VSK 437 + Sbjct: 449 KKE 451 >gi|30265314|ref|NP_847691.1| NADH dehydrogenase subunit M [Bacillus anthracis str. Ames] gi|47530852|ref|YP_022201.1| NADH dehydrogenase subunit M [Bacillus anthracis str. 'Ames Ancestor'] gi|49188127|ref|YP_031380.1| NADH dehydrogenase subunit M [Bacillus anthracis str. Sterne] gi|65317267|ref|ZP_00390226.1| COG1008: NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Bacillus anthracis str. A2012] gi|165869879|ref|ZP_02214536.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0488] gi|167636388|ref|ZP_02394688.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0442] gi|170689322|ref|ZP_02880516.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0465] gi|170708849|ref|ZP_02899284.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0389] gi|190567664|ref|ZP_03020576.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis Tsiankovskii-I] gi|227818054|ref|YP_002818063.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. CDC 684] gi|229604218|ref|YP_002869506.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0248] gi|254686286|ref|ZP_05150145.1| NADH dehydrogenase subunit M [Bacillus anthracis str. CNEVA-9066] gi|254724282|ref|ZP_05186066.1| NADH dehydrogenase subunit M [Bacillus anthracis str. A1055] gi|254744423|ref|ZP_05202103.1| NADH dehydrogenase subunit M [Bacillus anthracis str. Kruger B] gi|254755727|ref|ZP_05207760.1| NADH dehydrogenase subunit M [Bacillus anthracis str. Vollum] gi|254759540|ref|ZP_05211565.1| NADH dehydrogenase subunit M [Bacillus anthracis str. Australia 94] gi|30259992|gb|AAP29177.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. Ames] gi|47506000|gb|AAT34676.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49182054|gb|AAT57430.1| NADH dehydrogenase I, M subunit [Bacillus anthracis str. Sterne] gi|164714202|gb|EDR19722.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0488] gi|167528222|gb|EDR91004.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0442] gi|170126249|gb|EDS95141.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0389] gi|170666690|gb|EDT17459.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0465] gi|190561080|gb|EDV15053.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis Tsiankovskii-I] gi|227004396|gb|ACP14139.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. CDC 684] gi|229268626|gb|ACQ50263.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0248] Length = 497 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 150/425 (35%), Positives = 246/425 (57%), Gaps = 26/425 (6%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + GR E WI + F + Y LG+DG Sbjct: 33 ALGLFGTVLPFGMAIVLACTYASGRDLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 92 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L + I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 93 LSLVMMVLTALLAMLAAFT----IKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 148 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK- 202 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 149 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILAS 208 Query: 203 --------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 209 VGAGGGMVVPSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 268 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 269 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 328 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++P + Sbjct: 329 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSG 388 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 389 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAAGVLGIILTAVYVLRATLQVTFG 448 Query: 435 VSKCE 439 + E Sbjct: 449 KKEWE 453 >gi|291566218|dbj|BAI88490.1| NADH dehydrogenase subunit 4 [Arthrospira platensis NIES-39] Length = 503 Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 156/442 (35%), Positives = 251/442 (56%), Gaps = 13/442 (2%) Query: 6 LSIVTFLPFLGVFVI--LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS++ +P +G +I L S+ RS +AL + + +++L + FD FQ Sbjct: 2 LSLLIAIPLVGSLLIGLLPPSFTPHRIRS---IALAVMALTGLWTLKLTLDFDLDNPGFQ 58 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 EY WI SY LG+DG+S+ LV L+ LTP I SS + R Y L++ Sbjct: 59 WEEYLSWIPQLGLSYSLGMDGLSLPLVGLSAILTPMAIASSRPDMNRP-RLYYSMILLVN 117 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + + GAFLS ++LLF +F+E LIP++++I +WGG +R YAA KF +YT I +L A Sbjct: 118 AAIAGAFLSQNLLLFVLFYELELIPIYLLISIWGGEKRSYAAMKFLIYTAVSGILILAAF 177 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + M W + S D A+ S Q + + F IKIP+ PFHTWLP+A+V++ Sbjct: 178 LGMAWLSGSGSF-DFGAIQTQNLSAISQLVLMVILLIGFGIKIPLVPFHTWLPDAYVESS 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 ++ L G++ K+G YG IRF L LFP + AP + +++ +++Y +L ++ Q DIK Sbjct: 237 APVTILLGGLLAKLGTYGLIRFGLQLFPETWKIIAPELSIIAVFSVMYGALTAISQQDIK 296 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 +++AYSSI HMGY+ + + +G + + GA+ QM++HGL+ + LF VG++ ++ TRD+ Sbjct: 297 RMVAYSSIGHMGYIIVAMAAGTEVSLIGAISQMVAHGLILAILFHLVGIVEVKVGTRDLK 356 Query: 361 AYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 GL + +P + ++++ MA+ G+PG GF+ EFLV F ++L Sbjct: 357 LLNGLMNPIRGLPLTSALLIMAGMASAGIPGLVGFVAEFLVFQGTFTVFPIQSLLCIIAS 416 Query: 418 VLSALYSLWLYRKVVFGVSKCE 439 L+A+Y + L + FG E Sbjct: 417 GLTAVYFVILLNRTCFGKLDNE 438 >gi|29831432|ref|NP_826066.1| NADH dehydrogenase I chain M [Streptomyces avermitilis MA-4680] gi|29608547|dbj|BAC72601.1| putative NADH dehydrogenase I chain M (complex I) [Streptomyces avermitilis MA-4680] Length = 527 Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 162/436 (37%), Positives = 242/436 (55%), Gaps = 26/436 (5%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQENFREYMI 116 S Q WI HLG+DGIS+ L+VLT LT C L S+ + ++ Sbjct: 72 SKMQATTDISWIPALHVRIHLGIDGISLPLLVLTALLTFLCALYSYFKMPAGPTPKAFVA 131 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LVLES + F LD+LLF++ FE LIPM+ +I WGG+ER AA+KF LYT GS+ Sbjct: 132 LVLVLESGTLATFAVLDLLLFFLAFEMVLIPMYFLIARWGGAERQAAAWKFILYTLLGSV 191 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 ML ++++ + T ++ L + S+Q +A A+K PM+P H+WLP+ Sbjct: 192 VMLLGLLLIGIKAGTFDMVALATDNGRSLTTSVQVIAVLAIGIGLAVKTPMWPLHSWLPD 251 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH APT GSV LAG++LKMG YG +R LLP+ P + FAP + +++ IIY SL + Sbjct: 252 AHTAAPTVGSVLLAGVLLKMGTYGFVRILLPIAPDGLRTFAPYLAAFAVVGIIYGSLACL 311 Query: 295 ------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ LFF VG Sbjct: 312 ALAKQGAKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGLLFFLVG 371 Query: 349 VIYDRLHTRDIFAY-----GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 + DR + D+ L PR ++ +A++GLPG +GF GE L + F Sbjct: 372 ALKDRTGSTDLDTLAEKTGAALYAKAPRLGGLLAFGAVASLGLPGLAGFWGEMLALFGAF 431 Query: 404 QNSNTVA--------VLASFGVVLSALYSLWLYRKVVFGVSKCE--KVQQLKDLSLRERC 453 + ++ ++ +A+FG +L+A Y L + R+V G E ++ L D+ E Sbjct: 432 KPADDLSRPAFLTFMAIAAFGTLLTAAYMLVVVRRVCMGAVPQESGQISTLADVQSYEFA 491 Query: 454 MVYPIAVLTVFFGIYP 469 P+ LTV G++P Sbjct: 492 AWTPLVALTVVAGLWP 507 >gi|229136106|ref|ZP_04264860.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus BDRD-ST196] gi|228647351|gb|EEL03432.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus BDRD-ST196] Length = 482 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 160/481 (33%), Positives = 271/481 (56%), Gaps = 37/481 (7%) Query: 32 SFFGVAL--GISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YH 78 FG AL GI+T+ + + G+S E WI + F + Y Sbjct: 17 GLFGTALPFGIATV-------LACTYASGKSLSIFDEKVKWIKFGDFTAVDKRWFSIYYE 69 Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++LF+ Sbjct: 70 LGIDGLSLVMMVLTALLAMLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFF 128 Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 +FFE +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L Sbjct: 129 MFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNIAELK 188 Query: 199 AM---------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG Sbjct: 189 EILTSVGAGGGMAVSSSVQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAG 248 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+G YG +RF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+ Sbjct: 249 VLLKIGAYGIVRFGKGLFPEYFRDFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSIS 308 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V +G+ + G++GA+FQ++SHGL+++ LFF +G+I +R T DI A GGL ++ Sbjct: 309 HMGIVLMGLAALNAPGIQGALFQVVSHGLIAALLFFLLGIIEERFGTSDITALGGLAKSV 368 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + + MA++G+PG SGFI EFL + +FQ +A G++L+A+Y L Sbjct: 369 PVLSGFFLAGGMASLGMPGMSGFISEFLAFLGLFQGKPVIAAAGVLGIILTAVYVLRATL 428 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTL 489 +V FG + E D+ E V + V + G+ P + D PL + ++ + Sbjct: 429 QVTFGKKEWEAKS---DIHGWEYIPVIVLIVCIIAIGVMPELLGD----PLQTTLKTLGV 481 Query: 490 K 490 K Sbjct: 482 K 482 >gi|110227128|ref|YP_665606.1| NADH dehydrogenase subunit 4 [Populus alba] gi|122237034|sp|Q14FA8|NU4C_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|109945566|dbj|BAE97254.1| NADH dehydrogenase subunit 4 [Populus alba] Length = 500 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 143/436 (32%), Positives = 238/436 (54%), Gaps = 12/436 (2%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI++F Y LG+DG+S+ ++LT F+T L++ + I + R + L + Sbjct: 63 QLTESYKWINFFDFYWRLGIDGLSLGPILLTGFITTLATLAA-RPITRDSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S ++LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 122 YSGQIGLFSSQNLLLFFIMWELELIPVYLLLAMWGGKQRLYSATKFILYTAGSSVFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 182 ALGIAFYASNEPTFNFETSANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L A F+ + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLSHAHSIFSSWLIIVGAIQIIYAASTSSGQKNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG+ IGI+S G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFTIIGIYSISDMGLNGAILQIISHGFIGAALFFLSGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ ++ + ++A++ LPG SGF E +V + + + Sbjct: 362 DEMGGMATLMPKIFMMFSILSLASLALPGMSGFFAELVVFFGIITAKKFFLMPKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G +L+ +Y L + R++ +G D RE + I + + GIYP Sbjct: 422 TAVGTILTPIYLLSMLRQMFYGYKLFNATNSYFFDSGPRELFVSIAILLPVISIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 482 VFSLSVDKVEAILSNY 497 >gi|296268316|ref|YP_003650948.1| proton-translocating NADH-quinone oxidoreductase subunit M [Thermobispora bispora DSM 43833] gi|296091103|gb|ADG87055.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermobispora bispora DSM 43833] Length = 535 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 149/385 (38%), Positives = 225/385 (58%), Gaps = 22/385 (5%) Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 D GR F++ W+ +HLGVDGIS+ LVVLT LT C + + E R Sbjct: 55 DAGRVQFEV--DLPWVPALGVRFHLGVDGISLPLVVLTALLTFLCFVHLARHRPEAGRPR 112 Query: 115 MIAF--LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF 172 +AF LVLE ++G FL+LD+LLF++FFE L+PM+ +I +WGG R AA KF LYT Sbjct: 113 ALAFALLVLEVGMMGTFLALDLLLFFVFFEVVLVPMYFVIAIWGGDGRRAAAVKFILYTL 172 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSK-----FPFSIQYWMWIAFFCSFAIKIPMFP 227 GS +L ++V+ + T +D+ A+++ P + Q ++A A+K PM+P Sbjct: 173 LGSALLLIGLLVVALQAGT---LDMTALAERRGAGIPRAAQVVAFLAIGLGLAVKTPMWP 229 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 HTWLP+AH +APT GSV LAG++LKMG YG R +P P + +AP + + I I+ Sbjct: 230 LHTWLPDAHTEAPTVGSVLLAGVLLKMGSYGFARIAIPALPEGAAAWAPWLGAFAAIGIV 289 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 Y +L + Q D+K+LIA+SS+ HMG+V +G+ + G+ A+F ++HGL++ LFF Sbjct: 290 YGALACLAQRDLKRLIAFSSVGHMGFVLLGLATLTPVGMNAALFGNIAHGLITGLLFFLA 349 Query: 348 GVIYDRLHTRDIFAY-GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 G + +R T DI GGL+ +P ++ +A++GLPG +GF GE L ++ F+ + Sbjct: 350 GAVKERYGTSDIARIGGGLLGRLPYLGSLLTFAGIASLGLPGLAGFWGEMLALLGAFRPA 409 Query: 407 NTVA--------VLASFGVVLSALY 423 + + V G VL+A Y Sbjct: 410 DALPRPLFLVFMVAGGVGAVLTAAY 434 >gi|309773947|ref|NP_075436.2| ND4 protein [Yarrowia lipolytica] gi|54036243|sp|Q9B6D6|NU4M_YARLI RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|12718804|emb|CAC28103.2| ND4 protein [Yarrowia lipolytica] Length = 486 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 139/391 (35%), Positives = 232/391 (59%), Gaps = 3/391 (0%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 G+DG+S+ ++LT L P +L +W +I N Y L + +++ F +LD + FYI Sbjct: 80 GIDGLSLTFILLTVLLIPLTLLGNWYNINFNSNLYYTLVLAIGLVILLNFWALDYISFYI 139 Query: 140 FFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA 199 FEA+L +F++I ++G S+ A++ ++T GS+FML +IVV+ T++ I+ + Sbjct: 140 LFEATLPLLFILIHIYGSSDSERASFYVLMFTLSGSLFMLLSIVVISIVLNTTNFIN-HN 198 Query: 200 MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 + +Q +W+ F + +K P+FP H WLP H ++P AGS+ LAG++LK+ Y Sbjct: 199 LFVLSLDLQTIIWLGLFIAIMVKTPLFPIHVWLPVVHSESPLAGSMILAGLILKLALYAI 258 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +R LLPL A + P+I+ +SL+ II SL ++ Q D+K +IAYSSI+HMG +G+ Sbjct: 259 LRLLLPLLCEAQILYTPMIYIISLLTIILTSLATLRQIDLKVIIAYSSISHMGIAILGVC 318 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 S G+ G++ ++HG VS ALF V G++YDR H R + Y GL MP+ A +++ Sbjct: 319 SNTSLGIYGSIVLGVAHGFVSPALFLIVGGILYDRYHIRIVNYYKGLTTYMPQLATYIII 378 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 + AN+G P T F GEFL + F + + ++ V+L+A+Y L L K+ G+S Sbjct: 379 LSFANIGTPLTGNFTGEFLSLQGGFIRNPIIGGISCISVLLAAIYQLKLTNKLTGGISSI 438 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + + D+++RE+ ++ + + T+ GI P Sbjct: 439 -YMHRTNDVTIREKFIMNILIISTLIIGICP 468 >gi|229164236|ref|ZP_04292170.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus R309803] gi|228619258|gb|EEK76150.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus R309803] Length = 496 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 150/425 (35%), Positives = 250/425 (58%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + G+S E WI + F + Y LG+DG Sbjct: 29 ALGLFGTALPFGIAIVLACTYASGKSLSLFDEKVKWIKFGDFTAVDKRWFSIYYELGIDG 88 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 89 LSLVMMVLTALLAMLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 147 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM--- 200 +L PMF++IG WG AAY + +Y GS +L ++ + T++I +L + Sbjct: 148 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIAELKEILTS 207 Query: 201 ------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q ++IA +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 208 GSAGEGQIIPSSLQLGVFIAIMVAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 267 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA ++ L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 268 GAYGIIRFGKGLFPEYFREFATLLAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 327 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++P + Sbjct: 328 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSG 387 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L +V FG Sbjct: 388 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVLGIILTAVYVLRATLQVTFG 447 Query: 435 VSKCE 439 E Sbjct: 448 KKAWE 452 >gi|229199413|ref|ZP_04326078.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus m1293] gi|228584127|gb|EEK42280.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus m1293] Length = 497 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 140/372 (37%), Positives = 231/372 (62%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++L Sbjct: 83 YELGIDGLSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 141 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L V+ + T++I + Sbjct: 142 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITE 201 Query: 197 LYAM---------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + P S+Q+ ++++ +FAIK+P+FP H W+ N H++A A + Sbjct: 202 LKEILTSVGAGGGMAVPNSLQFGLFLSIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 261 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 262 AGVLLKIGAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 321 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL Sbjct: 322 ISHMGIVLMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAK 381 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ VA G++L+A+Y L Sbjct: 382 SVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVVAAAGVLGIILTAVYVLRA 441 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 442 TLQVTFGKKEWE 453 >gi|304437250|ref|ZP_07397210.1| NADH-quinone oxidoreductase subunit M [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369742|gb|EFM23407.1| NADH-quinone oxidoreductase subunit M [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 509 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 149/458 (32%), Positives = 254/458 (55%), Gaps = 23/458 (5%) Query: 46 IFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSW 104 + +LFV++ +D Q EY WI D +Y LGVDGIS+ +++L++ + + SSW Sbjct: 44 LLTLFVYADYDMVLGGMQYTEYMPWITDLGVAYSLGVDGISLPMLLLSSVVGLAAVYSSW 103 Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI--- 161 +++ +EY + L++ + V GAFL D+ F + E +IP ++++ +WG SER+ Sbjct: 104 H-VEKRVKEYFVLLLIVIAGVSGAFLVRDLFFFLVLCEMVVIPAYLMVMIWGSSERVTKE 162 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVM---CWEKKTSS-----IIDLYAMSKFPFSIQYWMWI 213 +AA K ++ GS FML ++++ +E + + + +Q ++ Sbjct: 163 HAAMKMTIFLLVGSAFMLVGVLLLYVSAYESGMRTFDFEALAAAALAGHISWEVQVTAFL 222 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 F + MFP H W P+ + APTA S+ AG++ K+GGY IR L + PL +++ Sbjct: 223 LLLVGFGSHLSMFPMHIWSPDGYAGAPTAISMINAGVLKKIGGYALIRVGLFILPLGAKF 282 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 +AP+I L+ I +IYAS +++ Q DIK +IAYSSI+HMGYV +G + V GA+ M Sbjct: 283 WAPLIAILATINVIYASYIALAQRDIKYMIAYSSISHMGYVLLGFAALNVVSVGGAVAYM 342 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HG++ + F VG +Y++ R + GL H MP V M+ + ++GLPG GF+ Sbjct: 343 VAHGIMLALFFSQVGYVYEKTELRRVGDLWGLAHYMPHVTVGFMLAGLCSLGLPGLIGFV 402 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EF + + + + V+A G++ +A Y L + +V+FG K E+ + D + Sbjct: 403 PEFTIFVGTVEAYPALTVIAVSGIIFTAFYVLRMLARVLFG-PKVERFAKYPD---ERKI 458 Query: 454 MVYPIAVLTVF---FGIYP---VPIRDTFSVPLSSIIE 485 V P+ VL VF FG++P + + D + PL+ ++E Sbjct: 459 DVVPLVVLGVFLVGFGVFPGLLMGMVDVGTAPLAPLLE 496 >gi|229181539|ref|ZP_04308865.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus 172560W] gi|228601907|gb|EEK59402.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus 172560W] Length = 496 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 149/423 (35%), Positives = 249/423 (58%), Gaps = 17/423 (4%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 82 YELGIDGLSLVMMVLTALLAMLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 141 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 200 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 201 LKEILRSVSAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 260 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 261 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 320 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL Sbjct: 321 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITVLGGLAK 380 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 381 SVPILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 440 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 +V FG + E + D+ E V + + G+ P + D PL + ++ Sbjct: 441 TLQVTFGKKEWE---EKSDIHGWEYVPVLLLIFCIIAIGVMPELLGD----PLQNTLKTL 493 Query: 488 TLK 490 +K Sbjct: 494 GVK 496 >gi|124002246|ref|ZP_01687100.1| NADH-quinone oxidoreductase chain 13 [Microscilla marina ATCC 23134] gi|123992712|gb|EAY32057.1| NADH-quinone oxidoreductase chain 13 [Microscilla marina ATCC 23134] Length = 565 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 127/284 (44%), Positives = 188/284 (66%), Gaps = 11/284 (3%) Query: 205 FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 +S+++W ++A F FAIK+P+ P HTWLP+AHV+APTA SV LAGI+LK+GGYG IR Sbjct: 271 YSLRFWAFLALFIGFAIKLPVVPVHTWLPDAHVEAPTAISVVLAGILLKVGGYGLIRIAY 330 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 +FP + FA + FL +++IIY +L ++ TD+KK+IAYSS++HMG+V IG+ S Sbjct: 331 SIFPDMALSFAVITGFLGMLSIIYGALNALAMTDLKKMIAYSSVSHMGFVLIGLASFTAE 390 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 G+ GA+FQM SHG++S+ LF VGV+YDR H R I Y GL+ MP Y V +M+ A++ Sbjct: 391 GINGAVFQMFSHGILSALLFLLVGVLYDRTHDRSIGNYRGLLSKMPYYGVFVMIGFFASL 450 Query: 385 GLPGTSGFIGEFLVIMSVFQNSNT---VAVLASFGVVLSALYSLWLYRKVVFG----VSK 437 GLPG SGFIGE I+ F + + V+++FG+VL A Y LW +++ G + Sbjct: 451 GLPGFSGFIGELFTILGGFASPYLPVWIVVVSTFGIVLGAAYFLWTLQRMFLGKYWVKND 510 Query: 438 CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP----VPIRDTFS 477 E QL++L+ RE M+ ++++ + GI+P P+ DT + Sbjct: 511 LEWSPQLQNLTPREWVMLVSLSLIALITGIFPGLLFQPLTDTVN 554 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 109/197 (55%), Gaps = 21/197 (10%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA-LGISTINFIFSLFVWSVFDKGR----- 59 LS + LP L +LF + + F +A L + + S + + F+ G+ Sbjct: 2 LSFIVLLPLLVCATLLFMPH---HQVKLFKIATLFTTAAQLLASCWAYFKFETGKKTVTI 58 Query: 60 ---SSFQMIEYYHWI--------DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ 108 +++Q++E WI Y +GVDG+SI +++L+ + ++SW +IQ Sbjct: 59 SQEAAYQLVEKLEWIRLDLGSFGQLSIDYFIGVDGVSISMILLSAIVMFMGAIASW-NIQ 117 Query: 109 ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFF 168 + + Y + +L+L S V G F++LD LFY+FFE L+PM+ +IG+WGG R YA+ KFF Sbjct: 118 QKQKGYFLLYLLLSSSVPGCFVALDFFLFYLFFEFMLLPMYFLIGIWGGVRREYASIKFF 177 Query: 169 LYTFFGSIFMLFAIVVM 185 +YT GS+F+L ++ + Sbjct: 178 IYTLVGSLFILVVMIAL 194 >gi|229105883|ref|ZP_04236509.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock3-28] gi|228677542|gb|EEL31793.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock3-28] Length = 495 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 153/430 (35%), Positives = 251/430 (58%), Gaps = 30/430 (6%) Query: 32 SFFGVAL--GISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YH 78 FG AL GI+T+ + + G+S E WI + F + Y Sbjct: 30 GLFGTALPFGIATV-------LACTYASGKSLSLFDEKVKWIKFGDFAAVDKRWFSIYYE 82 Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++LF+ Sbjct: 83 LGIDGLSLVMMVLTALLAMLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAKNLMLFF 141 Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I +L Sbjct: 142 IFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIAELK 201 Query: 199 AM---------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + P ++Q ++IA +FAIK+P+FP H W+ N H++A A + AG Sbjct: 202 EILTGVSAGGGQIVPSNLQLGVFIAIMIAFAIKLPIFPLHRWMVNVHIEAHPAVVMLHAG 261 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+ Sbjct: 262 VLLKIGAYGMIRFGKGLFPEYFREFATLIAVLGVINLLYGAFLALIQTDFRKVLAYSSIS 321 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++ Sbjct: 322 HMGIVLMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDIKALGGLAKSV 381 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 382 PILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVLGIILTAVYVLRATL 441 Query: 430 KVVFGVSKCE 439 +V FG + E Sbjct: 442 QVTFGKKEWE 451 >gi|307151310|ref|YP_003886694.1| proton-translocating NADH-quinone oxidoreductase subunit M [Cyanothece sp. PCC 7822] gi|306981538|gb|ADN13419.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7822] Length = 497 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 155/472 (32%), Positives = 253/472 (53%), Gaps = 14/472 (2%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS + +LP +G ++ F + G R + + I F +S+++ + FD + Q Sbjct: 2 LSTLLWLPLVGAAIVGFIPGNLEGAKLRQITSI---FALIIFGWSIWLLTQFDLSVTGLQ 58 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 EY W+ SY LG+DGIS+ L+VL T LT I S + ++ + R Y L++ Sbjct: 59 FQEYLPWLPKIGLSYSLGIDGISLPLIVLNTLLTGIAIYSIGEKLERS-RLYYALILIIN 117 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + + GA ++ ++LLF IF+E LIP +++I +WGG +R YA+ KF LYT + +L A Sbjct: 118 AGISGALMAQNLLLFIIFYELELIPFYLMIAIWGGEKRGYASIKFLLYTAISGLLVLAAF 177 Query: 183 VVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + +S D A+ F + Q + F IKIP+ P HTWLP+A+ +A Sbjct: 178 LGITFLSGGTSF-DYVAVHPENFGLNTQLILLTLILVGFGIKIPLVPLHTWLPDAYTEAS 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 A ++ L GI+ K+G YG IRF L LFP +P + + I++IY +L ++ Q DIK Sbjct: 237 PATAILLGGILAKLGTYGLIRFGLQLFPETWAIISPGLAIIGTISVIYGALSAIAQKDIK 296 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 +++AYSSI HMGY+ + +G + G++ QM+SHGL+ + LF VG++ ++ TRD+ Sbjct: 297 RMVAYSSIGHMGYILVAAAAGTDLSILGSVAQMISHGLILALLFHLVGIVERKVGTRDLD 356 Query: 361 AYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 GL + +P + +++ MA+ G+PG GF EF+V F + +L Sbjct: 357 ILNGLMNPIRGLPLTSALLITAGMASAGIPGLVGFAAEFMVFQGSFSSFPIPTLLCIIAS 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+A+Y + L + FG + K L E + + +F GI P Sbjct: 417 GLTAVYFVILLNRTCFGKLDNKHAYYPKALP-TETIPALVLTAIILFLGIQP 467 >gi|47569786|ref|ZP_00240457.1| NADH dehydrogenase I, subunit 4 [Bacillus cereus G9241] gi|47553528|gb|EAL11908.1| NADH dehydrogenase I, subunit 4 [Bacillus cereus G9241] Length = 500 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 150/425 (35%), Positives = 250/425 (58%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + G+S E WI + F + Y LG+DG Sbjct: 33 ALGLFGTVLPFGMAIVLACTYASGKSLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 92 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 93 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 151 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM--- 200 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 152 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILTS 211 Query: 201 ------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 212 VGAGGGMAVPNSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 271 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 272 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 331 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL ++P + Sbjct: 332 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITVLGGLAKSVPVLSG 391 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGFI EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 392 FFLAGGMASLGLPGMSGFISEFLAFLGLFQGEPVIAAAGVLGIILTAVYVLRATLQVTFG 451 Query: 435 VSKCE 439 + E Sbjct: 452 KKEWE 456 >gi|301056758|ref|YP_003794969.1| NADH dehydrogenase subunit M [Bacillus anthracis CI] gi|300378927|gb|ADK07831.1| NADH dehydrogenase subunit M [Bacillus cereus biovar anthracis str. CI] Length = 500 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 150/425 (35%), Positives = 250/425 (58%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + GR E WI + F + Y LG+DG Sbjct: 33 ALGLFGTVLPFGMAIVLACTYASGRDLSLFDEKVKWIKFGDFAAVDKRGFSIYYELGIDG 92 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 93 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 151 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK- 202 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 152 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILAS 211 Query: 203 --------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 212 VGAGGGMVVPSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 271 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 272 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 331 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++P + Sbjct: 332 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSG 391 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 392 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQVEPVIAAAGVLGIILTAVYVLRATLQVTFG 451 Query: 435 VSKCE 439 + E Sbjct: 452 KKEWE 456 >gi|229158851|ref|ZP_04286909.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus ATCC 4342] gi|228624835|gb|EEK81604.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus ATCC 4342] Length = 497 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 155/464 (33%), Positives = 264/464 (56%), Gaps = 24/464 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + G+S E WI + F + Y LG+DG Sbjct: 30 ALGLFGTVLPFGMAIVLACTYASGKSLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 89 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 90 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 148 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM--- 200 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 149 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILTS 208 Query: 201 ------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 209 VGAGGGMAVPNSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 268 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 269 GAYGIIRFGQGLFPEYFREFAALIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 328 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL ++P + Sbjct: 329 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITVLGGLAKSVPVLSG 388 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 389 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAAGVLGIILTAVYVLRATLQVTFG 448 Query: 435 VSKCEKVQQLKDLS-LRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 + E + + +++ I + V I P+R+T Sbjct: 449 KKEWEAKADIHGWEYVPILLLIFCIIAIGVMPEILGDPLRNTLK 492 >gi|14017623|ref|NP_114308.1| NADH dehydrogenase subunit 4 [Triticum aestivum] gi|17433126|sp|P58420|NU4C_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|13928256|dbj|BAB47085.1| NADH dehydrogenase ND4 [Triticum aestivum] Length = 500 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 165/500 (33%), Positives = 269/500 (53%), Gaps = 17/500 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ ++ I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHKGNKVVRWYTIS--ICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID F + LG+DG+S+ ++LT F+T L++W I N R + L + Sbjct: 63 QLKEDYKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-ITRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPGLDLERLINQSYPATLEILLYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAIQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTASDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN-------SNTVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKTLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+ +Y L + R++ +G K V D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGY-KLFNVPNANFVDSGPRELFILICIFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 481 FVLSLSVDRVEALLSNYYPK 500 >gi|49481258|ref|YP_039282.1| NADH dehydrogenase subunit M [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332814|gb|AAT63460.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 500 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 150/425 (35%), Positives = 250/425 (58%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + GR E WI + F + Y LG+DG Sbjct: 33 ALGLFGTVLPFGMAIVLACTYASGRDLSLFDEKVKWIKFGDFAAIDKRWFSIYYELGIDG 92 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 93 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 151 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK- 202 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 152 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILAS 211 Query: 203 --------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 212 VGAGGGMVVPSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 271 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 272 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 331 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++P + Sbjct: 332 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSG 391 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 392 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQVEPVIAAAGVLGIILTAVYVLRATLQVTFG 451 Query: 435 VSKCE 439 + E Sbjct: 452 KKEWE 456 >gi|269128574|ref|YP_003301944.1| proton-translocating NADH-quinone oxidoreductase subunit M [Thermomonospora curvata DSM 43183] gi|268313532|gb|ACY99906.1| proton-translocating NADH-quinone oxidoreductase, chain M [Thermomonospora curvata DSM 43183] Length = 496 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 162/449 (36%), Positives = 262/449 (58%), Gaps = 22/449 (4%) Query: 55 FDKGRSSFQMIEYYH-WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE--N 110 FD G +E+ W +HLGVDG+S+ LV+LT LT C++ + + + + Sbjct: 48 FDHGDPRRMQLEFDRAWAPAIDLRFHLGVDGVSLPLVLLTALLTFLCLVYTLRHPPQGGS 107 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 R + + LVLE ++G F++LD+LLF++FFE LIPM+++I +WGG+ R AA+KF LY Sbjct: 108 ARLLIASVLVLEVGMLGTFVALDLLLFFVFFEVVLIPMYLVIALWGGAGRRAAAWKFILY 167 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPM 225 T GS +L ++V+ T +D+ A+++ P + Q + AIK+PM Sbjct: 168 TLLGSGLLLAGLLVVGTNAGT---LDMTALAEAPGQGLTRTAQITAFALIGLGLAIKVPM 224 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 +P HTWLP+AH +APT GSV LAG++LKMG YG +R LP P + +AP + +++I Sbjct: 225 WPLHTWLPDAHTEAPTIGSVLLAGVLLKMGTYGLVRIALPAAPEGAVVWAPWLGLMAVIG 284 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 I+Y +L + Q D+K+LIAYSSI HMG+V +GI + GV A+ ++HGL++ LFF Sbjct: 285 IVYGALACLAQRDLKRLIAYSSIGHMGFVLLGIATLTPVGVNAALLGNIAHGLITGLLFF 344 Query: 346 CVGVIYDRLHTRDIFAY-GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G + DR T ++ + GG++ P A + ++A++GLPG +GF GE L ++ ++ Sbjct: 345 LAGGVKDRYGTGELDSLGGGMLTKAPLLASFLTFASVASLGLPGLAGFWGEMLALLGAYR 404 Query: 405 NSN--------TVAVLASFGVVLSALYSLWLYRKVVFG-VSKCEKVQQLKDLSLRERCMV 455 + T + + G VL+A Y L L K+ G V++ + L L+L E Sbjct: 405 PAEALPRETFVTFMAVGALGAVLTAAYFLRLLAKITHGPVAEHRRRDALPGLTLAEYAAW 464 Query: 456 YPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 P+ LT+ G++P + D + P+++++ Sbjct: 465 VPLVALTLLVGLWPKLLLDLTTAPVTALL 493 >gi|197107558|gb|ACH42359.1| NADH dehydrogenase subunit 4 [Alaria esculenta] Length = 235 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 123/233 (52%), Positives = 168/233 (72%), Gaps = 2/233 (0%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 ++LTT + P C+L+SW + + Y+I+FL +E +++ F +LD+L FYIFFEA LIPM Sbjct: 4 IILTTLIFPLCLLASWSFAKGEVKTYLISFLCMELVLLLVFTNLDLLFFYIFFEAVLIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 F++IG++G ER I AAY FFLYT GS+FML IV + + S+ + ++ F Sbjct: 64 FLVIGIYGSRERKIRAAYMFFLYTLLGSLFMLIGIVYI-YLFAGSTNYEALSVVNFSSYD 122 Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LF Sbjct: 123 QKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLF 182 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS 320 PLAS YF P IF LSL+ ++Y SL ++ +TD+K+LIAY+S+AHM V IG+F+ Sbjct: 183 PLASVYFTPFIFSLSLLGVVYTSLTAIRRTDLKRLIAYTSVAHMNLVMIGLFT 235 >gi|223936519|ref|ZP_03628430.1| proton-translocating NADH-quinone oxidoreductase, chain M [bacterium Ellin514] gi|223894683|gb|EEF61133.1| proton-translocating NADH-quinone oxidoreductase, chain M [bacterium Ellin514] Length = 498 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 161/443 (36%), Positives = 244/443 (55%), Gaps = 21/443 (4%) Query: 56 DKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREY 114 K + I W+ Y LG DGIS+ LV+LT IL SW +I+ +E+ Sbjct: 49 HKAPTEIDTITKVPWVPSLGIEYFLGADGISLTLVLLTGIAAVVGILFSW-NIEHRAKEF 107 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174 +L L V G FLS D+ L ++F+E ++IP + +I +WG + + Y A K LY+F G Sbjct: 108 FAFYLALIGGVYGVFLSFDLFLLFVFYELAIIPKYFLIAIWGSTNKEYGAMKLALYSFLG 167 Query: 175 SIFMLFAIV---VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 S +L +V VM KT ++++L A FP S Q+W + F FAI ++PFHTW Sbjct: 168 SAMVLIGLVATYVMS-PVKTMNLLEL-AKYAFPESFQHWAFPLVFVGFAILAGLWPFHTW 225 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 P HV APTA S+ LAG+++K+G YG +R + LFP + VI L++I I+Y ++ Sbjct: 226 APTGHVAAPTAASMLLAGVVMKLGAYGALRVAMTLFPQGLAIWKDVIGLLAVIGIVYGAM 285 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG-VI 350 V++VQ D K +I YSS++HMG+V +G+ + G GA+ QM SHG+++ LF VG ++ Sbjct: 286 VALVQKDFKFVIGYSSVSHMGFVLLGLLTLNTIGWSGAVLQMFSHGIIAGLLFGVVGRMV 345 Query: 351 YDRLHTRD--IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 YDR HTR+ + GL +P A + ++A+MG+PG SGF E V++ ++ Sbjct: 346 YDRTHTRELPVLKKLGLSKALPFAACTFALASLASMGMPGFSGFAAELQVLIGAWKAFPV 405 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGV-------SKCEKVQQLKDLSLRERCMVYPIAVL 461 AVLA FGV++ Y+L + + F E L +S+ ER + + Sbjct: 406 YAVLAGFGVLVGVAYTLRVLQLSFFNDPTPAIEGEAGEATHPLPTISVPERLGAAILLGI 465 Query: 462 TVFFGIYPVPIRD----TFSVPL 480 T+ GIYP + D +F PL Sbjct: 466 TIVIGIYPKLLLDLIGPSFDSPL 488 >gi|116749369|ref|YP_846056.1| proton-translocating NADH-quinone oxidoreductase subunit M [Syntrophobacter fumaroxidans MPOB] gi|116698433|gb|ABK17621.1| proton-translocating NADH-quinone oxidoreductase, chain M [Syntrophobacter fumaroxidans MPOB] Length = 493 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 148/445 (33%), Positives = 246/445 (55%), Gaps = 8/445 (1%) Query: 41 STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFC 99 S I + S+ V+ +DK + Q +E WI Y DG ++ ++LT + Sbjct: 44 SGITLVLSVIVFCAYDKSQGGLQFVEKVMWIPSLGIQYFNAADGFNLPNLLLTGIVFFTG 103 Query: 100 ILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 +L+ W+ ++ +EY + +L V G F+S+D+ +++++ SL PM+++I VWG + Sbjct: 104 VLTMWE-LETRVKEYYALYFLLVLGVFGLFMSMDLFFIFVWYDVSLFPMYLLIAVWGHTR 162 Query: 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSIIDLYAMSKFPFSIQYWMWIAFFC 217 + Y A K LY GS +L AIV + T ++ L F +Q + + + Sbjct: 163 KEYGAMKLTLYLLAGSALILPAIVYLFTRSGLNTFDVVALMQPGVFSADVQKFAFPLLYL 222 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 F I ++PFHTW P HV APT S+ AG+++K+G +G +R + L PL QY+A + Sbjct: 223 GFGILAGVWPFHTWSPVGHVAAPTGVSMVHAGVLMKIGAFGILRVGIFLCPLGWQYWAQL 282 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 + L+ + IIY +LV + QTD+K +I YSS++HMG V +G+ + G+ GA+FQM SHG Sbjct: 283 MALLAAVGIIYGALVGLRQTDLKYVIGYSSVSHMGVVGLGLSTVSVDGLNGAVFQMFSHG 342 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 ++++ LF VG IYDR HT+ I GGL MP + ++ +A MG+PG + F GE + Sbjct: 343 IMTALLFSSVGYIYDRTHTKMIPELGGLSRIMPVASAYFILAALAGMGVPGLANFWGELV 402 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYP 457 V ++ + ++A +V++AL+ L + +K +G + E+ L D+S Sbjct: 403 VFIAAVKVYPVRGIVAVLALVVTALFMLRVVQKTFYG-PENERHAHLPDVSFGLGVPRMI 461 Query: 458 IAVLTVFFGIYPVPIRD---TFSVP 479 +A + V FG+YP + D T S+P Sbjct: 462 LAFVLVLFGLYPALMFDVIQTASIP 486 >gi|281419765|ref|ZP_06250764.1| NADH dehydrogenase, M subunit [Prevotella copri DSM 18205] gi|281406141|gb|EFB36821.1| NADH dehydrogenase, M subunit [Prevotella copri DSM 18205] Length = 499 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 142/406 (34%), Positives = 236/406 (58%), Gaps = 12/406 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 +Y LGVDGIS+++++LT+ + +SW+ ++ +EY + F +L V G F+S+DM Sbjct: 77 NYSLGVDGISVVMLLLTSIIVFTGTFASWQ-MEPMKKEYFLWFTLLSIGVYGFFISIDMF 135 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSS 193 ++F+E +LIPM+++IGVWG + Y+A K L GS ++ I+ + + +T Sbjct: 136 TMFMFYEVALIPMYLLIGVWGSGAKEYSAMKLTLMLMGGSALLVIGILGIYFYSGAQTFE 195 Query: 194 IIDLYAMSK----FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 I+D+ + P S+Q + F F I +FPFHTW P+ H APTA S+ AG Sbjct: 196 ILDIAHHTNGAHAIPESVQNVFFPLLFIGFGILGALFPFHTWSPDGHASAPTAVSMLHAG 255 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFF-LSLIAIIYASLVSMVQTDIKKLIAYSSI 308 +++K+GGYGC R + L P A+ F +F L+ I+I+Y +L + VQTD+K + AYSS+ Sbjct: 256 VLMKLGGYGCFRIAMFLLPAATHGFWIKVFLVLTTISIVYGALSACVQTDLKYINAYSSV 315 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +H G V + ++ GA+ QMLSHGL+++ F +G+IY + TRD+ GGL+ Sbjct: 316 SHCGMVLFALCMMTETAATGAILQMLSHGLMTALFFAVIGMIYHQAGTRDVRYLGGLMKI 375 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYS 424 +P +V V +AN+GLPG SGF+ E + + FQN++ ++A +V++A+Y Sbjct: 376 IPFLSVGYAVAGLANLGLPGFSGFVAEMTIFVGAFQNADMFHRVCTIIACTSIVVTAVYI 435 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 L K+++ K+++L D + ER V + G++P+ Sbjct: 436 LRCVGKILYQKVPNPKLEKLHDATWDERIAVAGLIACVAGLGMFPL 481 >gi|83956298|ref|ZP_00964739.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Sulfitobacter sp. NAS-14.1] gi|83839519|gb|EAP78700.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Sulfitobacter sp. NAS-14.1] Length = 486 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 173/490 (35%), Positives = 260/490 (53%), Gaps = 43/490 (8%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGR--S 60 +P LSI FLP LG +L + R GV++ I+ + F+ +L +W+ +G Sbjct: 1 MPLLSISVFLPLLGG--VLLMALPNKSARIAHGVSIAITGLTFLVTLAIWA---RGTLPG 55 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 F +E WI +Y +GVDG+S+ L++LT+ L + + + I + ++ L Sbjct: 56 GFAQVEEIAWIPAIGAAYRVGVDGLSLPLILLTSLLFFLSAIYAAR-ITDRPAVFVALML 114 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 +LE+ IG F +LD LLFY+FFE SL+ M+ +I WG ER A FF+YT GS+ +L Sbjct: 115 MLETASIGTFAALDALLFYVFFEVSLVGMYFMIVGWGYEERQRAGLMFFIYTLLGSLPLL 174 Query: 180 FAIV----------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 AI+ + W +T + L AM IA +FA+KIP FP H Sbjct: 175 LAIIGLYLATGSFDMRLW-IETPPLTGLAAMLAL---------IAMLFTFAVKIPSFPVH 224 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 TWLP AHVQAPT GSV LAG+MLK G YG +RF L + P A V+ + + +Y Sbjct: 225 TWLPAAHVQAPTVGSVILAGVMLKFGTYGLVRFALQMTPDAFAQAGQVVLAFGVFSALYG 284 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS--------GVEGAMFQMLSHGLVSS 341 + V++ Q+D+KK+IAY+S+ HMGYV IG+ + + GA QM+SHG+V+ Sbjct: 285 AFVALAQSDLKKMIAYTSVNHMGYVVIGVAVAALTLDPDLRAVALNGATLQMVSHGIVTG 344 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALFF VG++ R H R++ A+GGL+ +P ++ A++GLPG + F EF + ++ Sbjct: 345 ALFFLVGMLQSRAHEREMTAFGGLLGQVPWLGWAFVLSAFASLGLPGLAHFPAEFQIFLA 404 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKV--VFGVSKCEKVQQLKDLSLRERCMVYPIA 459 V VV + LY R + VF E+ + DL E + P+ Sbjct: 405 TLNAQPWAIVAIVAIVVTAGLY----LRAIAAVFLGELNERWAAMPDLDRGEMLAIVPLL 460 Query: 460 VLTVFFGIYP 469 +L + G+ P Sbjct: 461 ILIIVIGVAP 470 >gi|52140270|ref|YP_086560.1| NADH dehydrogenase subunit M [Bacillus cereus E33L] gi|51973739|gb|AAU15289.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus E33L] Length = 500 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 151/425 (35%), Positives = 250/425 (58%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + GR E WI + F + Y LG+DG Sbjct: 33 ALGLFGTVLPFGMAIVLACTYASGRDLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 92 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 93 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 151 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK- 202 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 152 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILAS 211 Query: 203 --------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 212 VGAGGGMVVPSSLQFGLFLAIVIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 271 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 272 GAYGIIRFGQGLFPEYFREFAMLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 331 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +GI + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++P + Sbjct: 332 LMGIAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSG 391 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 392 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQVEPVIAAAGVLGIILTAVYVLRATLQVTFG 451 Query: 435 VSKCE 439 + E Sbjct: 452 KKEWE 456 >gi|284034099|ref|YP_003384030.1| proton-translocating NADH-quinone oxidoreductase subunit M [Kribbella flavida DSM 17836] gi|283813392|gb|ADB35231.1| proton-translocating NADH-quinone oxidoreductase, chain M [Kribbella flavida DSM 17836] Length = 519 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 150/403 (37%), Positives = 227/403 (56%), Gaps = 27/403 (6%) Query: 56 DKGRSSFQMIEYYH----WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE- 109 D+G ++ + WI +HL VD IS+ L++L+ L C L S + Sbjct: 74 DRGEVPGRLQSWAETDLTWIPALDVRFHLAVDAISLPLILLSALLVFLCCLYSLRITPRI 133 Query: 110 -NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG----SERIYAA 164 R + LV+E+ VIG F + D++LF++FFE LIPM++II VWG + R AA Sbjct: 134 GRTRSLIALLLVIETGVIGTFAAADLVLFFLFFEVVLIPMWLIIDVWGDHHDRAGRRRAA 193 Query: 165 YKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA---- 220 F L T GS ML +++ + + DL + + P + + +A A Sbjct: 194 TTFVLMTVLGSAVMLVGFLLV---YRQAGTFDLELLGQDPVTGGHGAALAAAILIALGLA 250 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P++P H WLP+AH +APT GSV LAG++LK+G YG +R LLP+ P A+ AP + Sbjct: 251 VKMPLWPLHIWLPDAHAKAPTVGSVLLAGVLLKLGSYGLVRILLPVLPDATVTIAPYLAG 310 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 S +AI+ SL + QTD+K+LIAYSS+ HMG++ +GI + GV GA+F ++HGL++ Sbjct: 311 FSTVAIVAGSLACLAQTDVKRLIAYSSVGHMGFIGLGIATLSPEGVAGALFANIAHGLIT 370 Query: 341 SALFFCVGVIYDRLHTRDIFAYG-GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 LFF G I DR T ++ A G L +PR +V++ +A++GLPG +GF GE L + Sbjct: 371 GLLFFLAGAIKDRHDTSELRAIGRALYARLPRISVLLTFACLASLGLPGLAGFWGEMLAL 430 Query: 400 MSVFQNSNTVA--------VLASFGVVLSALYSLWLYRKVVFG 434 M F+ ++ + V+A G VL+A Y L L R + G Sbjct: 431 MGAFRPADGLPRTTYLVLMVIAGLGTVLTAAYFLRLVRNLCQG 473 >gi|228924026|ref|ZP_04087302.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835516|gb|EEM80881.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 496 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 140/372 (37%), Positives = 230/372 (61%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 82 YELGIDGLSLVMMVLTALLAMLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 141 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 200 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 201 LKEILRSVNAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 260 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 261 AGVLLKIGAYGIIRFGKGLFPEYFHDIATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 320 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL Sbjct: 321 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITVLGGLAK 380 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 381 SVPILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 440 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 441 TLQVTFGNKEWE 452 >gi|229020509|ref|ZP_04177256.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus AH1273] gi|229026726|ref|ZP_04183063.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus AH1272] gi|228734574|gb|EEL85231.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus AH1272] gi|228740780|gb|EEL91031.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus AH1273] Length = 497 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 147/423 (34%), Positives = 251/423 (59%), Gaps = 17/423 (4%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +G+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 83 YEIGIDGLSLVMMVLTALLAVLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 141 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L + + T++I + Sbjct: 142 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSALFAKTGTTNITE 201 Query: 197 LYAM---------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + S+Q+ +++A +FAIK+P+FP H W+ N H++A A + Sbjct: 202 LKEILTSVGAGGGMAVSSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 261 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 262 AGVLLKIGAYGIIRFGKGLFPEHFRDFATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 321 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ + G++GA+FQ++SHGL+++ LFF +G+I +R T DI A GGL Sbjct: 322 ISHMGIVLMGLAALNAPGIQGALFQVVSHGLIAALLFFLLGMIEERFGTSDITALGGLAK 381 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++G+PG SGFI EFL + +FQ +A + G++L+A+Y L Sbjct: 382 SVPVLSGFFLAGGMASLGMPGMSGFISEFLTFLGLFQGQPVIAAVGVLGIILTAVYVLRA 441 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 +V FG + E D+ E V + V + G+ P + D PL + ++ Sbjct: 442 TLQVTFGKKEWEAKS---DIHGWEYVPVILLIVCIIAIGVMPELLGD----PLQNTLKTL 494 Query: 488 TLK 490 +K Sbjct: 495 GVK 497 >gi|300115146|ref|YP_003761721.1| proton-translocating NADH-quinone oxidoreductase subunit M [Nitrosococcus watsonii C-113] gi|299541083|gb|ADJ29400.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus watsonii C-113] Length = 491 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 164/484 (33%), Positives = 264/484 (54%), Gaps = 31/484 (6%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFF--GVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS+ FLP V+L R F VAL + + F +L + + FD R Q Sbjct: 2 LSLTIFLPLATALVVLILPR----SRPFLIRWVALAGALLAFTAALGLLTGFDAARPGLQ 57 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 WI +Y +GV+G S+ L++LT +L ++ ++ + + + FL++ Sbjct: 58 WRATLPWIPPVNAAYDVGVNGFSLALILLTAWLLVTVMVYVLRN-DDRPKGHAALFLLMA 116 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS--IFMLF 180 + ++G F + D+LLFY+FFE L+PM+ IIG+WG +R YAA KFFLYT S I + F Sbjct: 117 TGLLGVFAAQDLLLFYLFFEVGLVPMYFIIGLWGHEDRRYAAMKFFLYTRAASLAILLSF 176 Query: 181 AIVVMCWEKKT---SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + E T +II+ +++ + W+ + F +K+P P H WLP+AHV Sbjct: 177 LALYLLMEPHTFSLPTIIEAQPLAQGS-TAGGWIMLGMLLGFGVKLPTVPLHNWLPDAHV 235 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APT GSV LAGI LKMG YG + +LP P +A ++ L+LI+++Y +L ++ Q Sbjct: 236 EAPTEGSVMLAGIQLKMGAYGLLAIMLPTMPRVMLEYAWLLLALALISLVYGALAALAQQ 295 Query: 298 DIKKLIAYSSIAHMGYVTIGIF--------SGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 D+K+LIAY+SI HMGY+ + S + G ++Q++SHGL++ +FF VGV Sbjct: 296 DLKRLIAYTSINHMGYIMLAAALAVLAPTASVQALALNGGIYQIISHGLLTGGMFFAVGV 355 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 I D+ TR++ GL ++++ V ++GLPG SGFIGEF ++ + + V Sbjct: 356 IQDQTGTREMGRLSGLSRQATVFSLLTGVLVFGSLGLPGLSGFIGEFQLLGAAVSWNFGV 415 Query: 410 AVLASFGVVLSALY-SLWLYRKVVFGVSKCEKVQQ---LKDLSLRERCMVYPIAVLTVFF 465 A GV L+AL + LY ++V V E Q +++ R+ ++ + +L++ Sbjct: 416 A-----GVTLAALVITTGLYLRIVISVLWGEPHAQAAAMREPEGRKLAILGSLTILSLLL 470 Query: 466 GIYP 469 GI P Sbjct: 471 GILP 474 >gi|218900417|ref|YP_002448828.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus G9842] gi|218543881|gb|ACK96275.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus G9842] Length = 500 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 149/423 (35%), Positives = 248/423 (58%), Gaps = 17/423 (4%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 86 YELGIDGLSLVMMVLTALLAMLAAIAAF-SIKSNLKAFYMLLLMLEIGMLGVFAAQNLML 144 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 145 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 204 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 205 LKEILRSVSAGGELVIPSSLQLGVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 264 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 265 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 324 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL Sbjct: 325 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITVLGGLAK 384 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 385 SVPILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 444 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 +V FG + E D+ E V + + G+ P + D PL + ++ Sbjct: 445 TLQVTFGKKEWEAKS---DIHGWEYVPVLLLIFCIIAIGVMPEILGD----PLQNTLKTL 497 Query: 488 TLK 490 +K Sbjct: 498 GVK 500 >gi|159901500|ref|YP_001547747.1| proton-translocating NADH-quinone oxidoreductase subunit M [Herpetosiphon aurantiacus ATCC 23779] gi|159894539|gb|ABX07619.1| proton-translocating NADH-quinone oxidoreductase, chain M [Herpetosiphon aurantiacus ATCC 23779] Length = 565 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 159/479 (33%), Positives = 265/479 (55%), Gaps = 68/479 (14%) Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 ++ Q ++ W+ +F Y +G+DG++ LV LTT LTP CIL++++ I+ Y+ Sbjct: 76 QAMIQQVDRVRWVPFFNADYFVGLDGLNFPLVFLTTALTPVCILAAFR-IKHRQNVYLAL 134 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 L+LES ++G F+SL+ LL ++F+E SL+PMF II WGG R YAA+KFF+YT GS+ Sbjct: 135 MLLLESAMLGYFVSLNFLLLFLFWEFSLVPMFFIINNWGGENRRYAAFKFFVYTMAGSVA 194 Query: 178 ML------------FAIVVMCWEKKT---------------------------SSIID-- 196 ML F +VV+ + S++ D Sbjct: 195 MLLIFEFIYLATGTFDLVVLSRLGQGLPVDPALLAPKLGAGYTSGATLQSMLFSAVEDIG 254 Query: 197 ----LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L + P +I +W + F +FA+K+ ++P HTW P+ + APT+GS+ ++ +M Sbjct: 255 LTSILGTSNGTPAAIVFW---SIFVAFAVKLAVWPLHTWQPDTYENAPTSGSMIVSAVMS 311 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 KMG YG IR ++ LFP +++FAP + L+L +I++ + + Q ++K+LIAY+SI HMG Sbjct: 312 KMGAYGMIRIMIMLFPQQTKFFAPALAILALASILFGAYAGLAQINLKRLIAYASINHMG 371 Query: 313 YVTIGIFSGMKSGVE---------------GAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 YV +G+ + + E G QM++HG ++ALFF G +Y+R T Sbjct: 372 YVLLGLAAVASAAPESLGDLAVNIRASAMNGVQAQMVAHGFSTAALFFLAGELYERTGTY 431 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 + +GGL MP +A +M V AN+GLPG +GF+GEF + + + +A G+ Sbjct: 432 QLDQFGGLRKVMPIFAGIMGVAMFANLGLPGLAGFVGEFFIFRGAWGTQPVITTIAVLGL 491 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC--MVYPIAVLTVFFGIYPVPIRD 474 +++AL + +Y+K+ +G K+ L D+ + + + P+ ++ + FGI+P P+ D Sbjct: 492 IVTALVLIRMYQKIFYGPVN-HKLTNLPDIKVGDWAFNVTLPLIIVLLVFGIFPKPLMD 549 >gi|229193542|ref|ZP_04320487.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus ATCC 10876] gi|228589931|gb|EEK47805.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus ATCC 10876] Length = 496 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 140/372 (37%), Positives = 230/372 (61%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 82 YELGIDGLSLVMMVLTALLATLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 141 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 200 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 201 LKEILRSVSAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 260 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 261 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 320 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL Sbjct: 321 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITVLGGLAK 380 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 381 SVPILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQREPVIAAVGVIGIILTAVYVLRA 440 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 441 TLQVTFGKKEWE 452 >gi|118430437|ref|YP_874702.1| NADH-plastoquinone oxidoreductase subunit 4 [Hordeum vulgare subsp. vulgare] gi|2145424|emb|CAA72935.1| ndhD [Hordeum vulgare subsp. vulgare] gi|118201091|gb|ABK79462.1| NADH-plastoquinone oxidoreductase subunit 4 [Hordeum vulgare subsp. vulgare] Length = 500 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 165/500 (33%), Positives = 269/500 (53%), Gaps = 17/500 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ ++ I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHKGNKIVRWYTIS--ICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID F + LG+DG+S+ ++LT F+T L++W I N R + L + Sbjct: 63 QLKEDYKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-ITRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPGLDLERLINQSYPATLEILLYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAIQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTASDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKALITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+ +Y L + R++ +G K V D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGY-KLFNVPNANFVDSGPRELFILICIFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 481 FVLSLSVDRVEALLSNYYPK 500 >gi|312233386|ref|YP_004021598.1| Nad4p [Candida jiufengensis] gi|268373373|gb|ACZ03945.1| Nad4p [Candida jiufengensis] Length = 453 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 145/410 (35%), Positives = 228/410 (55%), Gaps = 11/410 (2%) Query: 68 YHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 Y W + Y DGI+ + + L +L P I+++W SI+ Y + F L M++ Sbjct: 40 YDWNELDVYY--TTDGIADMFITLMAYLLPLSIMANWNSIKTTLY-YELVF-NLGIMLLI 95 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F+ DML FYI+FEASL P+F++IG++G + R AA +YT F S+FML AI V + Sbjct: 96 NFMCQDMLSFYIYFEASLAPLFILIGLYGANNREKAADYMLMYTLFSSLFMLMAIAV--Y 153 Query: 188 EKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 E + D A+S S +Q +++A +K P+ P HTWLP H ++P AGS+ Sbjct: 154 EVLIGNT-DYQAVSLLVLSTDLQCILFLAISMGIMVKTPLVPLHTWLPVVHSESPLAGSM 212 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LAGIM K+ Y IR +LP A+ + P + + +I +IY S +++ QTD+K ++AY Sbjct: 213 LLAGIMTKLAVYAIIRTILPTLSDAAYLYTPYVTMMGVITMIYTSTITLRQTDLKVIVAY 272 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGG 364 SSIAHM G S G+ G+ ++HG VS ALF V G+ YDR H+R I+ Y G Sbjct: 273 SSIAHMAVCITGTMSNSVVGIGGSTILSIAHGFVSPALFIIVGGITYDRYHSRLIYNYQG 332 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L+ MP A+ +++ + N+G P + FIGE + ++ LA V+LSA Y Sbjct: 333 LITYMPMLAMYLIMLSFCNIGTPLSVNFIGELFSTTGAINQTFPLSSLAMLSVLLSAAYM 392 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + + ++ G+ K + D + RE ++ + + T+F+G++P I + Sbjct: 393 MKVTNRLTGGI-KTPYIALTHDCTYRESVLLISLIMPTIFYGLFPNGIMN 441 >gi|163942979|ref|YP_001647863.1| NADH dehydrogenase subunit M [Bacillus weihenstephanensis KBAB4] gi|163865176|gb|ABY46235.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacillus weihenstephanensis KBAB4] Length = 500 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 160/481 (33%), Positives = 270/481 (56%), Gaps = 37/481 (7%) Query: 32 SFFGVAL--GISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YH 78 FG AL GI+T+ + + G+S E WI + F + Y Sbjct: 35 GLFGTALPFGIATV-------LACTYASGKSLSIFDEKVKWIKFGDFTAVDKRWFSIYYE 87 Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++LF+ Sbjct: 88 LGIDGLSLVMMVLTALLAMLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFF 146 Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 +FFE +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L Sbjct: 147 MFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNIAELK 206 Query: 199 AM---------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG Sbjct: 207 EILTSVGAGGGMAVSSSVQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAG 266 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+G YG +RF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+ Sbjct: 267 VLLKIGAYGIVRFGKGLFPEYFRDFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSIS 326 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V +G+ + G +GA+FQ++SHGL+++ LFF +G+I +R T DI A GGL ++ Sbjct: 327 HMGIVLMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGIIEERFGTSDITALGGLAKSV 386 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + + MA++G+PG SGFI EFL + +FQ +A G++L+A+Y L Sbjct: 387 PVLSGFFLAGGMASLGMPGMSGFISEFLAFLGLFQGKPVIAAAGVLGIILTAVYVLRATL 446 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTL 489 +V FG + E D+ E V + V + G+ P + D PL + ++ + Sbjct: 447 QVTFGKKEWEAKS---DIHGWEYIPVIVLIVCIIAIGVMPELLGD----PLQTTLKTLGV 499 Query: 490 K 490 K Sbjct: 500 K 500 >gi|228955537|ref|ZP_04117541.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804159|gb|EEM50774.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 496 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 140/372 (37%), Positives = 230/372 (61%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 82 YELGIDGLSLVMMVLTALLATLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 141 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 200 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 201 LKEILRSINAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 260 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 261 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 320 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL Sbjct: 321 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITVLGGLAK 380 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 381 SVPILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 440 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 441 TLQVTFGKKEWE 452 >gi|229063941|ref|ZP_04200240.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus AH603] gi|229169998|ref|ZP_04297691.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus AH621] gi|228613516|gb|EEK70648.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus AH621] gi|228716347|gb|EEL68057.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus AH603] Length = 497 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 159/483 (32%), Positives = 274/483 (56%), Gaps = 30/483 (6%) Query: 30 RRSFFGVALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS--------- 76 R S ALG+ + + F ++ + + G+S E WI + F + Sbjct: 23 RESRTVQALGLFGTALPFGIAIVLACTYASGKSLSIFDEKVKWIKFGDFTAVDKRWFSIY 82 Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 83 YELGIDGLSLVMMVLTALLAMLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 141 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F++FFE +L PMF++IG WG AAY + +Y GS +L V+ + T++I + Sbjct: 142 FFMFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNIAE 201 Query: 197 LYAM---------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + S+Q+ +++A +FAIK+P+FP H W+ N H++A A + Sbjct: 202 LKEILTSVGAGGGMAVSSSVQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 261 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG +RF LFP + FA +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 262 AGVLLKIGAYGIVRFGKGLFPEYFRDFATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 321 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ + G +GA+FQ++SHGL+++ LFF +G+I +R T DI A GGL Sbjct: 322 ISHMGIVLMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGIIEERFGTSDITALGGLAK 381 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++G+PG SGFI EFL + +FQ +A + G++L+A+Y L Sbjct: 382 SVPVLSGFFLAGGMASLGMPGMSGFISEFLAFLGLFQGKPVIAAVGVIGIILTAVYVLRA 441 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 +V+FG + E D+ E V + V + G+ P + D PL + ++ Sbjct: 442 TLQVIFGKKEWEAKF---DIHGWEYVPVIVLIVCIIAIGVMPELLGD----PLQTTLKTL 494 Query: 488 TLK 490 +K Sbjct: 495 GVK 497 >gi|309322195|ref|YP_003934110.1| NADH-plastoquinone oxidoreductase subunit 4 [Geranium palmatum] gi|197131442|gb|ACH47239.1| NADH-plastoquinone oxidoreductase subunit 4 [Geranium palmatum] gi|300069288|gb|ADJ66409.1| NADH-plastoquinone oxidoreductase subunit 4 [Geranium palmatum] Length = 515 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 142/419 (33%), Positives = 239/419 (57%), Gaps = 14/419 (3%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI + Y LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 74 QLVENYKWIHFLQFYWRLGIDGLSLGPILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 132 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 133 YSGQIGSFSSRDLLLFFIMWEFELIPVYLLLSLWGGKKRLYSATKFLLYTAVSSLFLLIG 192 Query: 182 IVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ + + + ++ A +P +++ ++I F +FA+K P+ P HTWLP+ H +A Sbjct: 193 VLSIGLFGSNEPTFHFEISAHQSYPAALEIILYIGFLITFAVKSPIIPLHTWLPDTHGEA 252 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + A F P + + I I+YA+ S+ Q ++ Sbjct: 253 HYSTCMLLAGILLKMGAYGLVRINVEFLTHAHSKFCPYLITIGAIQIVYAASTSLGQRNL 312 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 313 KKRIAYSSVSHMGFIIIGISSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVSF 372 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 373 HEMGGMAVAIPKVFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKIVITFG 432 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G + L D RE + I + + GIYP Sbjct: 433 MAIGMILTPIYSLSMLRQMFYGY-RLLNAPTLPFFDSGPRELFVSISILLPVIGIGIYP 490 >gi|228911131|ref|ZP_04074937.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis IBL 200] gi|228968412|ref|ZP_04129406.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar sotto str. T04001] gi|228791308|gb|EEM38916.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar sotto str. T04001] gi|228848494|gb|EEM93342.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis IBL 200] Length = 496 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/423 (35%), Positives = 248/423 (58%), Gaps = 17/423 (4%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 82 YELGIDGLSLVMMVLTALLAMLAAIAAF-SIKSNLKAFYMLLLMLEIGMLGVFAAQNLML 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 141 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 200 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 201 LKEILRSVSAGGELVIPSSLQLGVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 260 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 261 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 320 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL Sbjct: 321 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITVLGGLAK 380 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 381 SVPILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 440 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 +V FG + E D+ E V + + G+ P + D PL + ++ Sbjct: 441 TLQVTFGKKEWEAKS---DIHGWEYVPVLLLIFCIIAIGVMPEILGD----PLQNTLKTL 493 Query: 488 TLK 490 +K Sbjct: 494 GVK 496 >gi|228988515|ref|ZP_04148604.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771231|gb|EEM19708.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 497 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 148/425 (34%), Positives = 250/425 (58%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + G+S E WI + F + Y LG+DG Sbjct: 30 ALGLFGTVLPFGMAIVLACTYASGKSLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 89 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 90 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 148 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM--- 200 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 149 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILTS 208 Query: 201 ------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 209 VGAGGGMAVPNSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 268 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 269 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 328 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL ++P + Sbjct: 329 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITVLGGLAKSVPVLSG 388 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L ++ FG Sbjct: 389 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAAGVLGIILTAVYVLRATLQITFG 448 Query: 435 VSKCE 439 + E Sbjct: 449 KKEWE 453 >gi|126659665|ref|ZP_01730794.1| NAD(P)H-quinone oxidoreductase subunit D3 [Cyanothece sp. CCY0110] gi|126619010|gb|EAZ89750.1| NAD(P)H-quinone oxidoreductase subunit D3 [Cyanothece sp. CCY0110] Length = 498 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 139/402 (34%), Positives = 221/402 (54%), Gaps = 8/402 (1%) Query: 46 IFSLFVW--SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS 102 IF +W + F+ +Q EY W D+ SY L VDG+S+ L+ L + LT I S Sbjct: 39 IFGATIWLLTQFNLSDPGWQFSEYLPWADFIGLSYSLAVDGLSLPLIALNSLLTIIAIYS 98 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 +++ E R Y L++ + + GA S ++LLF IF+E LIP +++I +WGG +R Y Sbjct: 99 IGENV-ERPRLYYALTLLINAGITGALASQNLLLFVIFYELELIPFYLMIAIWGGEKRGY 157 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII-DLYAMSKFPFSIQYWMWIAFFCSFAI 221 A+ KF LYT + +L A + + + SS D+ + + + F I Sbjct: 158 ASTKFLLYTAVSGLLVLAAFLGIGFLNGASSFDYDIITTEGLALNTKLILLTVLLIGFGI 217 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 KIP+ P HTWLP+A+ +A A ++ L GI+ K+G YG IRF L LFP A +P + + Sbjct: 218 KIPLVPLHTWLPDAYTEASPAVTILLGGILAKLGTYGLIRFGLQLFPDAWAIVSPGLAII 277 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 ++++Y +L ++ Q DIK+++AYSSI HMGY+ + +G + GA+ QM+SHGL+ + Sbjct: 278 GTVSVLYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTRLSTLGAVAQMISHGLILA 337 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 LF VG++ ++ TRD+ GL + +P + +++ MA+ G+PG GF EF+V Sbjct: 338 LLFHLVGIVERKVGTRDLDVLNGLMNPIRGLPLTSALLITAGMASAGIPGLVGFAAEFIV 397 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK 440 F +L L+A+Y + L + FG EK Sbjct: 398 FQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGKLDNEK 439 >gi|229072758|ref|ZP_04205958.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus F65185] gi|228710384|gb|EEL62358.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus F65185] Length = 496 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 140/372 (37%), Positives = 230/372 (61%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 82 YELGIDGLSLVMMVLTALLATLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 141 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 200 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 201 LKEILRSINAEGALVIPSSLQLSVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 260 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 261 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 320 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL Sbjct: 321 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITVLGGLAK 380 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 381 SVPILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 440 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 441 TLQVTFGKKEWE 452 >gi|197107584|gb|ACH42372.1| NADH dehydrogenase subunit 4 [Hincksia granulosa] Length = 234 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 123/233 (52%), Positives = 166/233 (71%), Gaps = 2/233 (0%) Query: 90 VLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 +L T + P C+L+SW + + + Y+I+FL +E +++ F +LD+L FYIFFEA LIPMF Sbjct: 1 ILKTLIFPLCLLASWSFNKGDVKTYLISFLSMELVLLLVFTNLDLLFFYIFFEAVLIPMF 60 Query: 150 VIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ 208 ++IG++G +R I AAY FFLYT FGS+FML V+ + S+ + A F Q Sbjct: 61 LVIGIYGSRQRKIRAAYMFFLYTLFGSLFMLVG-VIYIYLFAGSTNYEALATVSFSHYDQ 119 Query: 209 YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LFP Sbjct: 120 KWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFP 179 Query: 269 LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSG 321 AS YF P IF LSL+ ++Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G Sbjct: 180 EASIYFTPFIFSLSLLGVVYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTG 232 >gi|17231649|ref|NP_488197.1| NAD(P)H-quinone oxidoreductase subunit M [Nostoc sp. PCC 7120] gi|17133292|dbj|BAB75856.1| NADH dehydrogenase subunit 4 [Nostoc sp. PCC 7120] Length = 500 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 167/475 (35%), Positives = 260/475 (54%), Gaps = 19/475 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ ++P L VI F VAL ++ I I++LF+ FD Q Sbjct: 2 LSVLIWIPILSAIVIGFWPSNPNQSSRIRLVALTVAAIVLIWNLFILFKFDISNPGMQFQ 61 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 EY W + SY LGVDG+SIL++VL + LT I SS + E R + L++ Sbjct: 62 EYLPWNETLGLSYQLGVDGLSILMLVLNSLLTWIAIYSS-SNKTERPRLFYSMILLVSGG 120 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V GAFLS ++LLF++F+E LIP +++I +WGG +R YA KF +YT F+L + Sbjct: 121 VAGAFLSENLLLFFLFYELELIPFYLLISIWGGEKRAYAGIKFLIYTAVSGAFILATFLG 180 Query: 185 MCW-EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M W TS D + +Q+ + + F IKIP+ PFHTWLP+A+V+A Sbjct: 181 MVWLTGSTSFAFDAISTQGLSAGMQFILLVGIILGFGIKIPLVPFHTWLPDAYVEASAPI 240 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 ++ L G++ K+G YG +RF L +FP AP + ++ IY +++++ Q DIK+++ Sbjct: 241 AILLGGVLAKLGTYGLLRFGLGMFPQTWSTVAPTLAIWGAVSAIYGAVIAIAQKDIKRMV 300 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI HMGYV + + + GA+ QM SHGL+ + LF VG+I +++ TR++ Sbjct: 301 AYSSIGHMGYVLLASAASTSLALVGAVSQMFSHGLILAILFHLVGIIEEKVGTRELDKLN 360 Query: 364 GL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVAVLAS 414 GL + +P + ++++ MA+ G+PG +GFI EF+ VFQ S +T+ +AS Sbjct: 361 GLMSPIRGLPLISALLVLSGMASAGIPGLTGFIAEFI----VFQGSFTAFPLSTLLCVAS 416 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G L+A+Y + L + FG + K L E+ +A L +F G+ P Sbjct: 417 SG--LTAVYFVILLNRTCFGRLDNNQAYYAKVL-WSEKTPALILAALIIFLGVQP 468 >gi|326943089|gb|AEA18985.1| NADH dehydrogenase subunit M [Bacillus thuringiensis serovar chinensis CT-43] Length = 500 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 145/411 (35%), Positives = 246/411 (59%), Gaps = 11/411 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 86 YELGIDGLSLVMMVLTALLAMLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 144 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 145 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAVLLIVFSILFAKTGTTNIVE 204 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++I+ +FAIK+P+FP H W+ N H++A A + Sbjct: 205 LKEILRSVSAEGELIIPSSLQLGVFISIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 264 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 265 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 324 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T +I A GGL Sbjct: 325 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSEITALGGLAK 384 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 385 SVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 444 Query: 428 YRKVVFGVSKCEKVQQLKDLS-LRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +V FG + E + + +++ I V+ V I P+++T Sbjct: 445 TLQVTFGKKEWEAKSDIHGWEYVPVLLLIFCIIVIGVMPEILGDPLQNTLK 495 >gi|304281797|gb|ADM21129.1| NdhD3 [Arthrospira platensis AGB-AP02] Length = 503 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 147/410 (35%), Positives = 236/410 (57%), Gaps = 8/410 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 +AL + + +++L + FD FQ EY WI SY LG+DG+S+ LV L+ Sbjct: 31 IALAVMALTGLWTLKLTLDFDLDNPGFQWEEYLPWIPQLGLSYSLGMDGLSLPLVGLSAI 90 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 LTP I SS + R Y L++ + + GAFLS ++LLF +F+E LIP++++I + Sbjct: 91 LTPMAIASSRPDMNRP-RLYYSMILLVNAAIAGAFLSQNLLLFVLFYELELIPIYLLISI 149 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMW 212 WGG +R YAA KF +YT I +L A + M W + S D A+ S Q + Sbjct: 150 WGGEKRSYAAMKFLIYTAVSGILILAAFLGMAWLSGSGSF-DFGAIQTQNLSAISQLVLM 208 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 + F IKIP+ PFHTWLP+A+V++ ++ L G++ K+G YG IRF L LFP + Sbjct: 209 VILLIGFGIKIPLVPFHTWLPDAYVESSAPVTILLGGLLAKLGTYGLIRFGLQLFPETWK 268 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 AP + +++ +++Y +L ++ Q DIK+++AYSSI HMGY+ + + +G + + GA+ Q Sbjct: 269 IIAPELSIIAVFSVMYGALTAISQQDIKRMVAYSSIGHMGYIIVAMAAGTEVSLIGAISQ 328 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL---VHNMPRYAVVMMVFTMANMGLPGT 389 M++HGL+ + LF VG++ ++ TRD+ GL + +P + ++++ MA+ G+PG Sbjct: 329 MVAHGLILAILFHLVGIVEVKVGTRDLKLLNGLMNPIRGLPLTSALLIMAGMASAGIPGL 388 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 GF+ EFLV F ++L L+A+Y + L + FG E Sbjct: 389 VGFVAEFLVFQGTFTVFPIQSLLCIIASGLTAVYFVILLNRTCFGKLDNE 438 >gi|289809527|ref|ZP_06540156.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 285 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 122/274 (44%), Positives = 182/274 (66%), Gaps = 1/274 (0%) Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 + FF +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS Sbjct: 1 MGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASA 60 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 FAP+ +L +I I Y + ++ Q DIK+LIAY+S++HMG+V I I++G + +GA+ Q Sbjct: 61 EFAPIAMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQ 120 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 M++HGL ++ LF G +Y+RLHTRD+ GGL M + M F +A +G+PGT F Sbjct: 121 MIAHGLSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNF 180 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRE 451 +GEF+++ +Q + V+++FG+V +++YSL + + FG +K + Q+L +SLRE Sbjct: 181 VGEFMILFGSYQVVPMITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELLGMSLRE 240 Query: 452 RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 ++ + VL V G YP PI DT +S+I + Sbjct: 241 LFIILLLVVLLVLLGFYPQPILDTSHSAMSNIQQ 274 >gi|158338476|ref|YP_001519653.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain M [Acaryochloris marina MBIC11017] gi|158308717|gb|ABW30334.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain M [Acaryochloris marina MBIC11017] Length = 529 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 158/478 (33%), Positives = 262/478 (54%), Gaps = 16/478 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ + P GV ++ + VAL ++ + F++++++ +F+ + + Q Sbjct: 2 LSVLVWFPLFGVLLLALLPKSIDANKYARSVALVVAGLVFVWTVYIAILFNPKQVTMQFG 61 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E+ WI +YHL VDG+S+ L+ L + LT I S+ + E R Y L+L S Sbjct: 62 EFIPWIKAIGLNYHLAVDGLSLPLLGLNSLLTFIAIWSTDPEV-ERPRFYYALMLLLNSS 120 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V GAFL+ D+LLF++F+E +IP++ +I +WGG+ R YAA KF LYT F I +L + Sbjct: 121 VAGAFLAQDVLLFFLFYELEIIPLYFLIAIWGGARRSYAATKFLLYTAFSGIVLLATFLG 180 Query: 185 MCWEKKTSSII--DLYAM--------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + W SS L A+ S +Q + + F IKIP FP HTWLP+ Sbjct: 181 IVWLSGASSFAYEPLRAIIVGASDTPSGLTLKLQLILMVGILLGFGIKIPFFPLHTWLPD 240 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+A T SV LAG++LK+G YG +R+ + L P A Y P + + ++ +Y + ++ Sbjct: 241 AHVEASTPVSVLLAGVLLKLGTYGLLRYGVGLLPDAWVYLGPWLAIWAAVSALYGTSCAI 300 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q D+KK++AY+SIAHM ++ + + + + A+ QM+SHGL+S+ LF VGV+Y + Sbjct: 301 SQQDMKKVVAYASIAHMAFILLAAAASTELSMIAAVCQMVSHGLISALLFLLVGVVYKKT 360 Query: 355 HTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +RD+F GL++ +P +M++ MA+ G+PG GFI EFL + + Sbjct: 361 GSRDMFFLRGLLNPERGLPLIGSMMILGVMASAGIPGMVGFISEFLTFRGSYPIFPVQTL 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + L+A+Y L + +V FG +++ ++ ++ +R + L GI P Sbjct: 421 VCMIATGLTAVYFLLMINRVFFG-RLPDELDRIPTVTWSDRLPAAILVALIFLLGIQP 477 >gi|197107614|gb|ACH42387.1| NADH dehydrogenase subunit 4 [Syringoderma phinneyi] Length = 218 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 121/218 (55%), Positives = 160/218 (73%), Gaps = 2/218 (0%) Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTF 172 ++I+FLV+E ++I F SLD++ FYIFFE LIPMF++IG+WG +R + AAY FFLYT Sbjct: 1 FLISFLVMELVLILVFTSLDLIFFYIFFETVLIPMFLVIGIWGSRQRKVRAAYLFFLYTL 60 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 GS+FML VV + S+ + ++ +F F Q W+W+AFF SFA K+PM PFH WL Sbjct: 61 LGSLFMLIG-VVYIYRFAGSTNFEALSIIEFSFHDQKWLWLAFFASFAAKVPMLPFHIWL 119 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P AHV+APTAGSV LAGI+LK+G YG +RF L LFPLAS YF P IF L L+ ++Y SL Sbjct: 120 PEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFPLASAYFTPFIFSLGLLGVVYTSLT 179 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 ++ QTD+K+LIAY+S+AHM V IG+F+G GVE A+ Sbjct: 180 AIRQTDLKRLIAYTSVAHMNLVIIGLFTGTVIGVEAAI 217 >gi|112382125|gb|ABI17318.1| NADH-plastoquinone oxidoreductase subunit 4 [Pelargonium x hortorum] Length = 506 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 142/418 (33%), Positives = 240/418 (57%), Gaps = 12/418 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E WI +F + LG+DG+S ++LT F+T L++W +++ R + L + Sbjct: 69 QLVEDSKWIFFFHFDWRLGIDGLSFGPILLTGFITTLATLAAWPVTRDS-RLFHFMMLAM 127 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 128 YSGQIGSFSSQDLLLFFMMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLIG 187 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + + ++ A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 188 VLGIGLYGSNEPTFNFEISAHRSYPAALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA 247 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A FAP + + I I+YA+ S+ Q ++ Sbjct: 248 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFAPYLIIVGAIQIVYAASTSLGQRNL 307 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 308 KKRIAYSSVSHMGFIIIGIGSITDAGLSGALLQIISHGFIGAALFFLAGTSYDRIRLGFF 367 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 368 DEMGGMAVAIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKILITFV 427 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 428 MAIGMILTPIYSLSMLRQMFYGYRLFNAPNPSFFDSGPRELFVSISILLPVIGMGIYP 485 >gi|323702655|ref|ZP_08114316.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfotomaculum nigrificans DSM 574] gi|323532318|gb|EGB22196.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfotomaculum nigrificans DSM 574] Length = 504 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 164/509 (32%), Positives = 281/509 (55%), Gaps = 24/509 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILF---SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 MN P L++ P L I+F C + G + ++ SL+V+ +++ Sbjct: 1 MNFPVLTVTLLAPILAALFIVFIPREEEKLCKSVAALGTGVALA-----LSLYVYFAYNQ 55 Query: 58 GRSSFQMIEYYH---WI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 Q +++ WI D SY L VDG+S+ +++LT + + +SW ++ +E Sbjct: 56 NAGGLQFVDFGRPIPWIRDLGVSYFLAVDGLSLPMLLLTNLIGFAAVFASW-NVNHRTKE 114 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI---YAAYKFFLY 170 MI L+L S V+G FL+ D+ +F +F+E +IP+++++ +WG S+R+ YA K +Y Sbjct: 115 LMILLLILISGVMGTFLAQDLFIFLLFYEVVVIPIYIMVIIWGSSKRVTKEYAGMKLTIY 174 Query: 171 TFFGSIFMLFAIV---VMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPM 225 GS F+L I+ + E ++ + A+++ FP Q +M+ F + M Sbjct: 175 LLIGSAFLLVGIIATFIKSIEITGTANMSFQALAQVDFPEQFQIYMFALMLLGFGSLLSM 234 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 +PFH+W P+ + APTA S+ AG++ K+GGYG IR + + PL ++++AP I L + Sbjct: 235 WPFHSWSPDGYAGAPTAVSMIHAGVLKKIGGYGLIRLAVFVMPLGAKFWAPWIAVLGVAG 294 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 + YA++ ++ Q D+K ++ YSS++HMGYV +GI S GV GA+ M +HG++++ F Sbjct: 295 VAYAAMGALAQKDLKYVVGYSSVSHMGYVLLGIASLGIIGVNGAVANMFAHGVMAALFFS 354 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 +G IY+R HTR I GGL H PR +V M+ +MA++GLPG F+ EF + + F+ Sbjct: 355 MIGFIYERTHTRWIPDMGGLSHQAPRLSVGFMMASMASLGLPGLISFVPEFTIFVESFKI 414 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 +AV+A G++++ALY L +FG +K E +KDL E + + + V Sbjct: 415 FGWLAVIAIAGIIITALYVLRAGANTLFGPAKSE-FSHIKDLRGPEMVPLVVLGSVLVIG 473 Query: 466 GIYPVPIRDTFSVPLSSIIE--NYTLKTG 492 G+ P + D + ++ I+ N L+ G Sbjct: 474 GLLPSLLFDMVNSGVAPILAHINDALQIG 502 >gi|228942437|ref|ZP_04104975.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975370|ref|ZP_04135926.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982006|ref|ZP_04142300.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis Bt407] gi|228777767|gb|EEM26040.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis Bt407] gi|228784352|gb|EEM32375.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817278|gb|EEM63365.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 496 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 145/411 (35%), Positives = 246/411 (59%), Gaps = 11/411 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 82 YELGIDGLSLVMMVLTALLAMLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IFFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 141 FFIFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAVLLIVFSILFAKTGTTNIVE 200 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++I+ +FAIK+P+FP H W+ N H++A A + Sbjct: 201 LKEILRSVSAEGELIIPSSLQLGVFISIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 260 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 261 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 320 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T +I A GGL Sbjct: 321 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSEITALGGLAK 380 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 381 SVPVLSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 440 Query: 428 YRKVVFGVSKCEKVQQLKDLS-LRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +V FG + E + + +++ I V+ V I P+++T Sbjct: 441 TLQVTFGKKEWEAKSDIHGWEYVPVLLLIFCIIVIGVMPEILGDPLQNTLK 491 >gi|228903765|ref|ZP_04067882.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis IBL 4222] gi|228855854|gb|EEN00397.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus thuringiensis IBL 4222] Length = 496 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 148/423 (34%), Positives = 247/423 (58%), Gaps = 17/423 (4%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S++++VLT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 82 YELGIDGLSLIMMVLTALLAMLAAIAAF-SIKSNLKAFYMLLLMLEIGMLGVFAAQNLML 140 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F+IF E +L PMF++IG WG AAY + +Y GS +L ++ + T++I++ Sbjct: 141 FFIFLEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNIVE 200 Query: 197 LYAMSK---------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + + P S+Q ++IA +FAIK+P+FP H W+ N H++A A + Sbjct: 201 LKEILRSVSAGGELVIPSSLQLGVFIAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 260 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG IRF LFP A +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 261 AGVLLKIGAYGIIRFGKGLFPEYFHDVATLIAILGVINLLYGTFLALIQTDFRKVLAYSS 320 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ S G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL Sbjct: 321 ISHMGIVLMGLASLNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDIMVLGGLAK 380 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L Sbjct: 381 SVPILSGFFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAVGVIGIILTAVYVLRA 440 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENY 487 +V FG + E D+ E V + + G+ P + D PL + ++ Sbjct: 441 TLQVTFGKKEWEAKS---DIHGWEYVPVLLLIFCIIAIGVMPEILGD----PLQNTLKTL 493 Query: 488 TLK 490 +K Sbjct: 494 GVK 496 >gi|118430353|ref|YP_874787.1| NADH-plastoquinone oxidoreductase subunit 4 [Agrostis stolonifera] gi|125956564|sp|A1EA59|NU4C_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|118201262|gb|ABK79631.1| NADH-plastoquinone oxidoreductase subunit 4 [Agrostis stolonifera] Length = 500 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 163/500 (32%), Positives = 268/500 (53%), Gaps = 17/500 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ ++ I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHRGNKIVRWYTIS--ICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDYKWIDILDFHWRLGIDGLSVGSILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPGLDLERLINQSYPTTLEILLYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAIQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTASDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+ +Y L + R++ +G K V D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGY-KLFNVPNANFVDSGPRELFILICIFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 481 LVLSLSVDRVEALLSNYYPK 500 >gi|229094400|ref|ZP_04225473.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock3-42] gi|228689001|gb|EEL42827.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock3-42] Length = 497 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 149/425 (35%), Positives = 249/425 (58%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + GR E WI + F + Y LG+DG Sbjct: 30 ALGLFGTVLPFGMAIVLACTYASGRDLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 89 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 90 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 148 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK- 202 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 149 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILAS 208 Query: 203 --------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 209 VGAGGGMVVPSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 268 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 269 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 328 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI GGL ++P + Sbjct: 329 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSDITGLGGLAKSVPVLSG 388 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 389 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQVEPVIAAAGVLGIILTAVYVLRATLQVTFG 448 Query: 435 VSKCE 439 + E Sbjct: 449 KKEWE 453 >gi|78212305|ref|YP_381084.1| proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus sp. CC9605] gi|78196764|gb|ABB34529.1| proton-translocating NADH-quinone oxidoreductase, chain M [Synechococcus sp. CC9605] Length = 496 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 156/409 (38%), Positives = 240/409 (58%), Gaps = 13/409 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD + Q++E W+ Y L +DG+S+ LV++ L ++S ++I+ R Sbjct: 51 FDAADAGLQLVEQARWVHAIGLDYALALDGLSLPLVLMNGVLCLVAAIAS-RTIENRPRV 109 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LV+ V GAFL+ ++LLF++F+E LIP++++I VWGG+ R YAA KF + T Sbjct: 110 YFALLLVISGAVNGAFLAQNLLLFFLFYELELIPLWMLIAVWGGANRAYAATKFLIVTAV 169 Query: 174 GSIFMLFAIVVMCWEKKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 + +L A + + T S+ + A + + Q + A F IKIP+FPFHTW Sbjct: 170 SGVLILGAFLGIALVTGTMDFSLRPILA-GELGMTAQLLLMGALLIGFGIKIPLFPFHTW 228 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AH +A T SV LAG++LK+G YG +RF L LFP A Q AP + + I+++Y SL Sbjct: 229 LPDAHTEASTPVSVLLAGVLLKLGTYGLLRFCLGLFPDAWQVAAPWLAGWAAISVLYGSL 288 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ QTD+K+++AYSS+ HMGYV + + G+ GA+FQM+SHGL+S LF VGV+Y Sbjct: 289 AAIAQTDMKRMVAYSSVGHMGYVLLAAAAATPLGLMGALFQMVSHGLISGVLFLVVGVVY 348 Query: 352 DRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 + TRD+ GL++ +P +M++ MA+ G+PG +GFI EFL+ Q Sbjct: 349 AKTGTRDLNVLRGLLNPQRGLPLTGSLMIIGVMASAGIPGMAGFISEFLIFRGSLQPFPL 408 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFG---VSKCEKVQQ--LKDLSLRER 452 +L+ G L+A+Y L L + FG ++ E V L ++LRE+ Sbjct: 409 ATLLSMVGSGLTAVYFLLLVNRAFFGRLAIAPGEVVNPRILNRVALREQ 457 >gi|332971767|gb|EGK10715.1| NADH-quinone oxidoreductase subunit M [Desmospora sp. 8437] Length = 512 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 152/419 (36%), Positives = 240/419 (57%), Gaps = 33/419 (7%) Query: 55 FDKGRSSFQMIEYYHW------------IDYFCSYHLGVDGISILLVVLTTFLTPFCILS 102 FD G Q + W + SYHLGVDG+S+ L+VL+ + + Sbjct: 57 FDPGSGGVQFEQSMTWFLIHLPQVQGPVAPWSVSYHLGVDGLSLPLIVLSAVIATLAACA 116 Query: 103 SWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIY 162 S I+E + Y + FL+LE+ ++G FL+ D+ LF++FFE +L+ +F +IG+WGG R Sbjct: 117 S-MYIRERQKGYFLMFLLLEAGMLGVFLARDLFLFFLFFEVTLVTLFFLIGIWGGVYRER 175 Query: 163 AAYKFFLYTFFGSIFMLFAIV---VMCWEKKTSSIID---------LYAMSKFPFSIQYW 210 AA + LY GS F+L I+ V+ I D L+A F Q Sbjct: 176 AANSYLLYNGLGSAFLLLGIIGLFVLYQTLDFDQIRDVAHRLEARQLFAQPAF----QGI 231 Query: 211 MWIAFFC---SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 +F C +FAIK+P+FPFHTW+ H +AP A + +G++LKMG YG IRF + LF Sbjct: 232 FLGSFLCLMLAFAIKLPVFPFHTWMLKVHTEAPPAVVMIHSGVLLKMGAYGLIRFGVELF 291 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P + A V+ L L+ I+Y ++++ Q+D+++++AY+S++HMG + GI + ++G+ Sbjct: 292 PDPIRENAMVLAALGLVNILYGAVLAFAQSDLRRILAYASVSHMGIILFGIAALNEAGLT 351 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 GA+FQ +SHGL+S+ LFF +G +++R T +I GGL P + + +A +GLP Sbjct: 352 GAVFQAVSHGLISALLFFYIGSLHERTGTTEIHELGGLARPAPVLTGIFLAGGLALLGLP 411 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD 446 G SGFI EFL + +FQ +A L + G+VL+A+Y+L K FG + E+ +++D Sbjct: 412 GMSGFISEFLAFLGLFQREPVLAALGTLGLVLAAVYTLQAVLKTGFGPQR-ERWSRIRD 469 >gi|319760605|ref|YP_004124543.1| NADH-quinone oxidoreductase subunit M [Candidatus Blochmannia vafer str. BVAF] gi|318039319|gb|ADV33869.1| NADH-quinone oxidoreductase subunit M [Candidatus Blochmannia vafer str. BVAF] Length = 518 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 162/454 (35%), Positives = 259/454 (57%), Gaps = 22/454 (4%) Query: 40 ISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPF 98 I N +FS FV + ++ S +Q+ WI F ++HL +DG+S+L+++L+ L Sbjct: 51 IECFNLLFSKFV--IMNQPTSLWQLEYIADWIPRFGINFHLALDGLSLLMLMLSGILGFV 108 Query: 99 CILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +L +W S Q + + + L L IGA LS+DM LF+ F+E +LIPM+ +I Sbjct: 109 AVLGAWNSNVDCHQRSQGLFYLNLLCLLGSGIGAVLSIDMFLFFFFWEITLIPMYFLISE 168 Query: 155 WGGSE------RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT-----SSIIDLYAMSKF 203 WG E R+ +A KFF+Y F + ML +IV++ + S D K Sbjct: 169 WGYIEFKSKNLRVISATKFFIYAQFSGLCMLVSIVIISYFNYQMNGFWSFDYDTLLQVKL 228 Query: 204 PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFL 263 P +I+Y + FF SFAIK+P+ PFH+WLP H +P GSV L GI+LK YG RF+ Sbjct: 229 PRNIEYCFMLGFFLSFAIKMPIVPFHSWLPEVHSFSPIMGSVDLVGILLKTSIYGFFRFV 288 Query: 264 LPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMK 323 LP P A+Q F+ V L L+ I Y S ++ QTDIKK+IAY++I+HMG + I I+S Sbjct: 289 LPFCPCAAQDFSLVAMLLGLLNICYGSWMACAQTDIKKIIAYANISHMGLILIAIYSNNH 348 Query: 324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMAN 383 +GA+ M+S + ++ +F G +Y+R +TR+I GGL +N+ V + F +A Sbjct: 349 LSYQGAIIHMISCSVSAAGMFMISGQLYERFNTRNITEIGGLWNNINFIPVFSLCFVVAM 408 Query: 384 MGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF-GVVLSALYSLWLYRKVVFGVSKCEKVQ 442 +G+PGT F+GE +++ +FQ + +A++A+ ++ S++YSL L +KV +G K++ Sbjct: 409 LGIPGTGNFVGEAIILFGIFQTAPFIAIIAALVSILFSSIYSLILMQKVYYGFP--SKIR 466 Query: 443 QLK-DLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 ++ RE+ + + + G++P I DT Sbjct: 467 GFSVNIGFREKLISIVLLMCIFLIGLFPQFILDT 500 >gi|193806351|sp|Q06FQ4|NU4C_PELHO RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 142/418 (33%), Positives = 240/418 (57%), Gaps = 12/418 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E WI +F + LG+DG+S ++LT F+T L++W +++ R + L + Sbjct: 63 QLVEDSKWIFFFHFDWRLGIDGLSFGPILLTGFITTLATLAAWPVTRDS-RLFHFMMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 122 YSGQIGSFSSQDLLLFFMMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLIG 181 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + + ++ A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 182 VLGIGLYGSNEPTFNFEISAHRSYPAALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A FAP + + I I+YA+ S+ Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFAPYLIIVGAIQIVYAASTSLGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITDAGLSGALLQIISHGFIGAALFFLAGTSYDRIRLGFF 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 362 DEMGGMAVAIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 422 MAIGMILTPIYSLSMLRQMFYGYRLFNAPNPSFFDSGPRELFVSISILLPVIGMGIYP 479 >gi|154362188|ref|YP_784127.2| NADH-plastoquinone oxidoreductase subunit 4 [Pelargonium x hortorum] Length = 501 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 142/418 (33%), Positives = 240/418 (57%), Gaps = 12/418 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E WI +F + LG+DG+S ++LT F+T L++W +++ R + L + Sbjct: 64 QLVEDSKWIFFFHFDWRLGIDGLSFGPILLTGFITTLATLAAWPVTRDS-RLFHFMMLAM 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF++ +E LIP+++++ +WGG +R+Y+A KF LYT SIF+L Sbjct: 123 YSGQIGSFSSQDLLLFFMMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLIG 182 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + + ++ A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 183 VLGIGLYGSNEPTFNFEISAHRSYPAALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEA 242 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L P A FAP + + I I+YA+ S+ Q ++ Sbjct: 243 HYSTCMLLAGILLKMGAYGLVRINMELLPHAHSIFAPYLIIVGAIQIVYAASTSLGQRNL 302 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 303 KKRIAYSSVSHMGFIIIGIGSITDAGLSGALLQIISHGFIGAALFFLAGTSYDRIRLGFF 362 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ +P+ + + +MA++ LPG SGF+ E +V + + + + Sbjct: 363 DEMGGMAVAIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKILITFV 422 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQ-QLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +YSL + R++ +G D RE + I + + GIYP Sbjct: 423 MAIGMILTPIYSLSMLRQMFYGYRLFNAPNPSFFDSGPRELFVSISILLPVIGMGIYP 480 >gi|162951860|ref|YP_001621430.1| NADH dehydrogenase subunit 4 [Debaryomyces hansenii] gi|215275689|sp|A9RAH8|NU4M_DEBHA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|98283741|gb|ABF58079.1| NADH dehydrogenase subunit 4 [Debaryomyces hansenii] Length = 467 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 134/396 (33%), Positives = 230/396 (58%), Gaps = 9/396 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFF 141 DG++ +L++LT ++ P ++S+W +++ Y L L M++ F+ DM FY++F Sbjct: 52 DGMADVLMLLTMYMLPLSMISNWNNMKSTL--YFELVLNLGMMLLINFMCQDMTSFYMYF 109 Query: 142 EASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS 201 EASL P+F+++G++G + R AA +YT F S+FML A+ + +E + D A S Sbjct: 110 EASLAPLFMLMGLYGAANRDKAADYVLMYTLFSSLFMLLAMAL--YEVMLDNT-DYQATS 166 Query: 202 KFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 S+ Q +++A A+K P+ P HTWLP H ++P AGS+ LAG++LK+ + Sbjct: 167 LLVLSLDLQCMLFLAMSMGIAVKTPLAPLHTWLPVVHSESPLAGSMLLAGMILKLAVFAM 226 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 IR +LP AS + P ++ + ++ ++Y S++++ QTD+K +IAYSSI+HM +G+ Sbjct: 227 IRLILPTLSDASVTYTPFVYVMCVMTMMYTSIITLRQTDLKVIIAYSSISHMAVCMLGML 286 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 S +G+ G++ ++HG VS LF V G++YDR H R ++ + GL+ MP +V M+ Sbjct: 287 SNTMTGITGSLVLCIAHGFVSPGLFMMVGGMLYDRYHNRLMYYFQGLISYMPYLSVYFMM 346 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 + NMG P + FIGE L + + + +A+ V+LSA Y + L ++ G+ K Sbjct: 347 LSFCNMGTPLSINFIGEMLSLTGAINRAPVLGAMAALSVLLSACYQMKLTNRLTGGI-KT 405 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 + D + RE ++ + V T+F G +P + D Sbjct: 406 PYMSLTSDCTYRETVLMITLIVPTMFLGFFPSWVMD 441 >gi|75906971|ref|YP_321267.1| NAD(P)H-quinone oxidoreductase subunit M [Anabaena variabilis ATCC 29413] gi|75700696|gb|ABA20372.1| NADH dehydrogenase subunit M [Anabaena variabilis ATCC 29413] Length = 500 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 167/475 (35%), Positives = 260/475 (54%), Gaps = 19/475 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ ++P L VI F VAL ++ I +++LF+ FD Q Sbjct: 2 LSVLIWIPILSAIVIGFWPSNPNQSSRVRLVALTVAGIVLLWNLFILLKFDISYPGMQFQ 61 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 EY W + SY LGVDG+SIL++VL + LT I SS K E R + L++ Sbjct: 62 EYLPWNETLGLSYQLGVDGLSILMLVLNSLLTWIAIYSSSKQ-TERPRLFYSMILLVSGG 120 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V GAFL+ ++LLF++F+E LIP +++I +WGG +R YA KF +YT F+L + Sbjct: 121 VAGAFLAENLLLFFLFYELELIPFYLLISIWGGEKRAYAGIKFLIYTAVSGAFILATFLG 180 Query: 185 MCWEKKTSSII-DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M W +SS D + +Q + + F IKIP+ PFHTWLP+A+V+A Sbjct: 181 MVWLTGSSSFAFDAVSTQNLSAGLQLILLVGIILGFGIKIPLVPFHTWLPDAYVEASAPI 240 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 ++ L G++ K+G YG +RF L +FP AP + ++ IY +++++ Q DIK+++ Sbjct: 241 AILLGGVLAKLGTYGLLRFGLGMFPQTWSTVAPTLAIWGAVSAIYGAVIAIAQKDIKRMV 300 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI HMGYV + + + GA+ QM SHGL+ + LF VGVI +++ TR++ Sbjct: 301 AYSSIGHMGYVLLASAASTSLALVGAVSQMFSHGLILAILFHLVGVIEEKVGTRELDKLN 360 Query: 364 GL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVAVLAS 414 GL + +P + ++++ MA+ G+PG +GFI EF+ VFQ S +T+ +AS Sbjct: 361 GLMSPIRGLPLISALLVLSGMASAGIPGLTGFIAEFI----VFQGSFAAFPFSTLLCVAS 416 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G L+A+Y + L + FG + K L E+ +A L +F G+ P Sbjct: 417 SG--LTAVYFVILLNRTCFGRLDNNQAYYAKVL-WSEKTPALILAALIIFLGVQP 468 >gi|229175964|ref|ZP_04303461.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus MM3] gi|228607558|gb|EEK64883.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus MM3] Length = 497 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 149/425 (35%), Positives = 251/425 (59%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + G+S E WI + F + Y LG+DG Sbjct: 30 ALGLFGTALPFGIAIVLACTYASGKSLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 89 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 90 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 148 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM--- 200 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 149 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILTS 208 Query: 201 ------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 209 VGAGGGMAVSSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 268 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 269 GAYGMIRFGKGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 328 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T DI A GGL ++P + Sbjct: 329 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIERRFGTSDITALGGLAKSVPVLSG 388 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A + G++L+A+Y L +V FG Sbjct: 389 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPIIAAVGVLGIILTAVYVLRATLQVTFG 448 Query: 435 VSKCE 439 + E Sbjct: 449 KKEWE 453 >gi|222098762|ref|YP_002532820.1| NADH dehydrogenase subunit m [Bacillus cereus Q1] gi|221242821|gb|ACM15531.1| NADH dehydrogenase I, M subunit [Bacillus cereus Q1] Length = 500 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 148/425 (34%), Positives = 251/425 (59%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + G+S E WI + F + Y LG+DG Sbjct: 33 ALGLFGTVLPFGMAIVLACTYASGKSLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 92 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 93 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 151 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM--- 200 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 152 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILTS 211 Query: 201 ------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ ++++ +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 212 VGAGGGMAIPNSLQFGLFLSIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 271 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 272 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 331 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T +I A GGL ++P + Sbjct: 332 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSNITALGGLAKSVPVLSG 391 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 392 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQAEPVIAAAGVLGIILTAVYVLRATLQVTFG 451 Query: 435 VSKCE 439 + E Sbjct: 452 KKEWE 456 >gi|260434843|ref|ZP_05788813.1| NAD(P)H-quinone oxidoreductase chain 4-2 [Synechococcus sp. WH 8109] gi|260412717|gb|EEX06013.1| NAD(P)H-quinone oxidoreductase chain 4-2 [Synechococcus sp. WH 8109] Length = 496 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 163/453 (35%), Positives = 258/453 (56%), Gaps = 14/453 (3%) Query: 12 LPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI 71 +PFLG ++ G R V++ + + + S + FD + Q++E W+ Sbjct: 9 IPFLGALALILWPGSPSGAR-LRDVSIVLLVVQCLASFALLLPFDAADAGLQLVEQARWV 67 Query: 72 DYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 Y L +DG+S+ LV++ L ++S ++I+ R Y LV+ V GAFL Sbjct: 68 HAIGLDYALALDGLSLPLVLMNGVLCLVAAIAS-RTIENRPRVYFALLLVISGAVNGAFL 126 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 + ++LLF++F+E LIP++++I VWGG+ R YAA KF + T + +L A + + + Sbjct: 127 AQNLLLFFLFYELELIPLWMLIAVWGGANRAYAATKFLIVTAVSGVLILGAFLGIAFVTG 186 Query: 191 TS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 T S+ + A + + Q + A F IKIP+FPFHTWLP+AH +A T SV LA Sbjct: 187 TMDFSLRPILA-GELGMTAQLLLMGALLIGFGIKIPLFPFHTWLPDAHTEASTPVSVLLA 245 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+G YG +RF L LFP A Q +P + + I+++Y SL ++ QTD+K+++AYSS+ Sbjct: 246 GVLLKLGTYGLLRFCLGLFPDAWQLASPWLAGWAAISVLYGSLAAIAQTDMKRMVAYSSV 305 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH- 367 HMGYV + + G+ GA+FQM+SHGL+S LF VGV+Y + TRD+ GL++ Sbjct: 306 GHMGYVLLAAAAATPLGLMGALFQMVSHGLISGVLFLVVGVVYAQTGTRDLNVLRGLLNP 365 Query: 368 --NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P +M++ MA+ G+PG +GFI EFL+ Q +L+ G L+A+Y L Sbjct: 366 QRGLPLTGSLMIIGVMASAGIPGMAGFISEFLIFRGSLQPFPLATLLSMVGSGLTAVYFL 425 Query: 426 WLYRKVVFG---VSKCEKVQQ--LKDLSLRERC 453 L + FG ++ E V L ++LRE+ Sbjct: 426 LLVNRAFFGRLAIAPGEVVNPRILNRVALREQA 458 >gi|162009907|gb|ABX82086.1| NADH dehydrogenase subunit 4 [Chlamydomonas reinhardtii] Length = 443 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 154/425 (36%), Positives = 241/425 (56%), Gaps = 28/425 (6%) Query: 50 FVWSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTTFLTPFCILSSWKSI 107 ++W FD QM+ HL G+DG+++ L++LTT L P C++ + Sbjct: 42 WMWWNFDASGHGLQMLVI------LGRSHLAFGIDGVALSLMLLTTVLFPICMM-----L 90 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV--WGGSERIYAAY 165 +M F++LE +V+ A LD+L FYI FEASLI +F++IG +G E AAY Sbjct: 91 LRTVAGFM-TFILLEVLVLSALCVLDLLGFYILFEASLILLFLLIGRAPYGSLE---AAY 146 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPM 225 K LYT GS+ +L + ++ E T++++ + ++ Q + A+KIP+ Sbjct: 147 KIVLYTMAGSLVLLPTLFMIYSECGTTNVLYMTC----AYNHQTVLGWGLLAVLAVKIPL 202 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 P H WLP AHV APTAGSV LAG++LK+GG G +RF+LP+ P P++ L L++ Sbjct: 203 MPVHLWLPEAHVAAPTAGSVLLAGVLLKLGGIGFLRFMLPVVPEFCVSVFPLVSTLCLVS 262 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 ++++L ++ Q D+KK++AYSSIAHM VT+ IFS + + F M++HGL+S ALF Sbjct: 263 FLFSTLSTLRQIDLKKIVAYSSIAHMSMVTLAIFSQSEFSAYSSSFLMIAHGLISPALFL 322 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 VG++YDR HT+ I + GL +MP + + +FT+ N+ P FI E L ++S+F Sbjct: 323 IVGILYDRAHTKFILYFSGLGASMPIGSTLFFLFTLGNLAFPLFPNFIAEVLCMVSIFAV 382 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 +A + VL A Y W + +VV G+ + D++ E V P+ + V+ Sbjct: 383 HELLAYVFCVCQVLGAAYGFWAFNRVVHGLPRGP-----ADVTRTEFHTVLPLLIGAVWL 437 Query: 466 GIYPV 470 GI P+ Sbjct: 438 GIKPM 442 >gi|11467090|ref|NP_042565.1| NADH dehydrogenase subunit 4 [Chlamydomonas reinhardtii] gi|128744|sp|P20113|NU4M_CHLRE RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|12512|emb|CAA47112.1| NADH dehydrogenase [Chlamydomonas reinhardtii] gi|563693|gb|AAB93441.1| NADH dehydrogenase subunit 4 [Chlamydomonas reinhardtii] gi|162009880|gb|ABX82062.1| NADH dehydrogenase subunit 4 [Chlamydomonas reinhardtii] gi|162009889|gb|ABX82070.1| NADH dehydrogenase subunit 4 [Chlamydomonas reinhardtii] gi|162009898|gb|ABX82078.1| NADH dehydrogenase subunit 4 [Chlamydomonas reinhardtii] gi|162009916|gb|ABX82094.1| NADH dehydrogenase subunit 4 [Chlamydomonas reinhardtii] gi|162145619|gb|ABX82840.1| NADH dehydrogenase subunit 4 [Chlamydomonas reinhardtii] gi|162145631|gb|ABX82851.1| NADH dehydrogenase subunit 4 [Chlamydomonas reinhardtii] Length = 443 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 154/425 (36%), Positives = 241/425 (56%), Gaps = 28/425 (6%) Query: 50 FVWSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTTFLTPFCILSSWKSI 107 ++W FD QM+ HL G+DG+++ L++LTT L P C++ + Sbjct: 42 WMWWNFDASGHGLQMLVI------LGRSHLAFGIDGVALSLMLLTTVLFPICMM-----L 90 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV--WGGSERIYAAY 165 +M F++LE +V+ A LD+L FYI FEASLI +F++IG +G E AAY Sbjct: 91 LRTVAGFM-TFILLEVLVLSALCVLDLLGFYILFEASLILLFLLIGRAPYGSLE---AAY 146 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPM 225 K LYT GS+ +L + ++ E T++++ + ++ Q + A+KIP+ Sbjct: 147 KIVLYTMAGSLVLLPTLFMIYSECGTTNVLYMTC----AYNHQTVLGWGLLAVLAVKIPL 202 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 P H WLP AHV APTAGSV LAG++LK+GG G +RF+LP+ P P++ L L++ Sbjct: 203 MPVHLWLPEAHVAAPTAGSVLLAGVLLKLGGIGFLRFMLPVVPEFCVSVFPLVSTLCLVS 262 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 ++++L ++ Q D+KK++AYSSIAHM VT+ IFS + + F M++HGL+S ALF Sbjct: 263 FLFSTLSTLRQIDLKKIVAYSSIAHMSMVTLAIFSQSEFSAYSSSFLMIAHGLISPALFL 322 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 VG++YDR HT+ I + GL +MP + + +FT+ N+ P FI E L ++S+F Sbjct: 323 IVGILYDRAHTKFILYFSGLGASMPIGSTLFFLFTLGNLAFPLFPNFIAEVLCMVSIFAV 382 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 +A + VL A Y W + +VV G+ + D++ E V P+ + V+ Sbjct: 383 HELLAYVFCVCQVLGAAYGFWAFNRVVHGLPRGP-----ADVTRTEFHTVLPLLIGAVWL 437 Query: 466 GIYPV 470 GI P+ Sbjct: 438 GIKPM 442 >gi|167641712|ref|ZP_02399956.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0193] gi|177654060|ref|ZP_02936070.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0174] gi|254735219|ref|ZP_05192928.1| NADH dehydrogenase subunit M [Bacillus anthracis str. Western North America USA6153] gi|167510337|gb|EDR85739.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0193] gi|172080943|gb|EDT66022.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus anthracis str. A0174] Length = 497 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 149/425 (35%), Positives = 245/425 (57%), Gaps = 26/425 (6%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + GR E WI + F + Y LG+DG Sbjct: 33 ALGLFGTVLPFGMAIVLACTYASGRDLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 92 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L + I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 93 LSLVMMVLTALLAMLAAFT----IKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 148 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK- 202 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 149 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILAS 208 Query: 203 --------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ +++A +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 209 VGAGGGMVVPSSLQFGLFLAIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 268 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 269 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 328 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++S GL+++ LFF +GVI R T DI A GGL ++P + Sbjct: 329 LMGLAALNAPGTQGALFQVVSQGLIAALLFFLLGVIEQRFGTSDITALGGLAKSVPVLSG 388 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 389 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQGEPVIAAAGVLGIILTAVYVLRATLQVTFG 448 Query: 435 VSKCE 439 + E Sbjct: 449 KKEWE 453 >gi|4150874|emb|CAA09817.1| ndhD gene product [Hordeum vulgare subsp. vulgare] Length = 500 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 163/500 (32%), Positives = 269/500 (53%), Gaps = 17/500 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ ++ I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHKGNKIVRWYTIS--ICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID F + LG+DG+S+ ++LT F+T L++W I N R + L + Sbjct: 63 QLKEDYKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-ITRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPGLDLERLINQSYPATLEILLYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAIQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTASDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKALITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL--KDLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+ +Y L + R++ +G K V L S+ +++ + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGY-KLFNVPNLCYARCSMDTSYLMFQTFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 481 FVLSLSVDRVEALLSNYYPK 500 >gi|251799765|ref|YP_003014496.1| NADH dehydrogenase subunit M [Paenibacillus sp. JDR-2] gi|247547391|gb|ACT04410.1| proton-translocating NADH-quinone oxidoreductase, chain M [Paenibacillus sp. JDR-2] Length = 543 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 173/526 (32%), Positives = 284/526 (53%), Gaps = 55/526 (10%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRS 60 +LP LSI+ P +G+ V+L R + VA ++T+ + ++ +DK + Sbjct: 6 DLPILSIILVTPLIGLLVVLLLPK---HRNRWLQVAAIVATLIPLLLSLWLYADYDKHQG 62 Query: 61 SFQMIEYYHWID---------------YFCS--YHLGVDGISILLVVLTTFLTPFCILSS 103 E W++ Y S Y +G+DG+S+ LV+LTT +T +S Sbjct: 63 GNTFEETATWVEVPLNKETQASNGVTNYTLSFQYDVGIDGLSLPLVILTTLITAMAAFAS 122 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYA 163 +++ ++ + FL+LE+ V+G F++ D+ LF+IFFE +LI M+ +IG+WG R A Sbjct: 123 -VHVKKRWKAFYAWFLLLETGVLGVFMARDLFLFFIFFEITLIAMYFLIGIWGYFNRERA 181 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCW------EKKTSSII----------DLYAMSKF---- 203 A +F +Y GS ML A +++ ++ TSS I +L S + Sbjct: 182 ANQFVIYNGLGSAIMLIAFILLVNTAGFHIDQDTSSFIYSGSYADILRNLSDPSAWVNLA 241 Query: 204 --------PFSIQYWMWIAFF----CSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 PF + M F +F IK+P+ PFHTW+ H +A A + +G++ Sbjct: 242 PDQTGGLNPFHMSETMHTVIFLLLVVAFGIKLPILPFHTWMLKVHNEAHPAIVMIHSGVL 301 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LKMG YG IRF + LFP ++ +A V+ L L ++Y +L++ QTD+K ++AYSSI+HM Sbjct: 302 LKMGAYGLIRFGIVLFPEQAKDWAVVLASLGLANLLYGALIAFRQTDLKLVLAYSSISHM 361 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V +G+ + G++GA+FQ++SHGL+S+ LF VG +Y+R T + GGL +MP Sbjct: 362 GIVLLGLAAFNGIGLQGAVFQLVSHGLISALLFLIVGSLYERTKTTTLSELGGLARSMPF 421 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + +++ +A++GLPG SGF+GEFL ++ +F + +A + GV+L+A+Y L K Sbjct: 422 ISGILLAAGLASLGLPGLSGFVGEFLSLLGLFDSQPWIAGFSVIGVILTAVYILRAVLKT 481 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 FG + E+ +KD L E + + + G YP + DTF Sbjct: 482 TFGPIE-ERYLGVKDARLVEALPMIVLLAFILLLGCYPSVLTDTFQ 526 >gi|133712118|gb|ABO36761.1| NADH-plastoquinone oxidoreductase chain 4 [Populus trichocarpa] Length = 506 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 143/436 (32%), Positives = 238/436 (54%), Gaps = 12/436 (2%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI++F Y LG+DG+S+ ++LT F+T L++ + I + R + L + Sbjct: 69 QLTESYKWINFFDFYWRLGIDGLSLGPILLTGFITTLATLAA-RPITRDSRLFHFLMLAM 127 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S ++LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 128 YSGQIGLFSSQNLLLFFIMWELELIPVYLLLAMWGGKQRLYSATKFILYTAGSSVFLLMG 187 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 188 ALGIAFYASNEPTFNFETSANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGEA 247 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L A F+ + + I IIYA+ S Q ++ Sbjct: 248 HYSTCMLLAGILLKMGAYGLVRINMELLSHAHSIFSSWLIIVGAIQIIYAASTSSGQKNL 307 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG+ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 308 KKRIAYSSVSHMGFTIIGICSISDMGLNGAILQIISHGFIGAALFFLSGTSYDRIRLVYL 367 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ ++ + ++A++ LPG SGF E +V + + + Sbjct: 368 DEMGGMATLMPKIFMMFSILSLASLALPGMSGFFAELVVFFGIITAKKYFLMPKILITFV 427 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSK-CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G +L+ +Y L + R++ +G + D RE + I + + GIYP Sbjct: 428 TAVGTILTPIYLLSMLRQMFYGYKLFNARNSYFFDSGPRELFVSIAILLPVISIGIYPDF 487 Query: 472 IRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 488 VFSLSVDKVEAILSNY 503 >gi|16332009|ref|NP_442737.1| NAD(P)H-quinone oxidoreductase subunit D4 [Synechocystis sp. PCC 6803] gi|1001321|dbj|BAA10808.1| NADH dehydrogenase subunit 4 [Synechocystis sp. PCC 6803] Length = 507 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 172/468 (36%), Positives = 257/468 (54%), Gaps = 13/468 (2%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 +ALGI S+ + F+ Q +EYY W+ +YHLGVDG+S+ L++L + Sbjct: 31 IALGIMVAMAGLSVLLAGQFNISDPQMQFVEYYPWLPSLGLNYHLGVDGLSLPLLLLNSA 90 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L I S+ I E R Y L+L V GAFL+ D+LLF++FFE +IP++ +I + Sbjct: 91 LVVIAIFSTNTEI-ERPRFYYALLLLLSGGVAGAFLAQDLLLFFLFFELEIIPLYFLIAI 149 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII-DLYAMSKFPFSIQYWMWI 213 WGG R YAA KF LYT +L + + W K + + P Q + + Sbjct: 150 WGGQRRGYAAMKFLLYTALSGFLVLVSFLGWFWLTKAPNFDYNPSLADALPVKTQMLLLL 209 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 IKIP+FPFHTWLP+AHV+A T SV LAG++LK+G YG +RF L L+ A Sbjct: 210 PLLLGLGIKIPIFPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGLGLYLEAWVE 269 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 FAP + L+ I+ +Y + ++ Q D+KK++AYSSIAHMGY+ + + + V A QM Sbjct: 270 FAPYLATLAAISALYGASCAIAQKDMKKVVAYSSIAHMGYILLAAAAATRLSVTAASAQM 329 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV---HNMPRYAVVMMVFTMANMGLPGTS 390 +SHG++S+ LF VGV+Y + +RD+ GL+ +P +M++ MA+ G+PG Sbjct: 330 VSHGIISALLFLLVGVVYKKTGSRDVDKLQGLLTPERGLPITGSLMILGVMASAGIPGMV 389 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 GFI EFLV F T +L G L+A+Y L + +V FG E + L + + Sbjct: 390 GFIAEFLVFRGSFPIFPTQTLLCLIGSGLTAVYFLLMINRVFFGRLTME-LSHLPKVRWQ 448 Query: 451 ERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSVK 498 E+ +AV+ + GI P + +S P +++ L TG+ D V Sbjct: 449 EQIPAIALAVVIIALGIQPHWLTQ-WSEPQTAV-----LLTGHPDLVS 490 >gi|297159547|gb|ADI09259.1| putative NADH dehydrogenase chain M [Streptomyces bingchenggensis BCW-1] Length = 578 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 149/405 (36%), Positives = 231/405 (57%), Gaps = 25/405 (6%) Query: 55 FDKGR-SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--EN 110 FD R ++ Q WI HLGVDG+S+ L+VLT LT C L + ++ + Sbjct: 63 FDHDRPAAMQAQTDISWIPALDIRIHLGVDGVSLPLLVLTALLTFLCALYGYFNMPAGPS 122 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + ++ L+LES + +F LD++LF++ FE LIPM+ +I WGG+ R AA++F LY Sbjct: 123 PKAFVALLLLLESGTLASFAVLDLMLFFLAFETVLIPMYFLINRWGGAGRERAAWRFILY 182 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS+ ML ++++ + T ++ L + +K + Q ++ A+K PM+P Sbjct: 183 TLLGSVIMLLGLLLVGLKGGTFDMVALASDNGAKLSHTTQLIAALSIGVGLAVKAPMWPL 242 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H+WLP+AH APT GSV LAG++LKMG YG +R +LP+ P + FAP + + + IIY Sbjct: 243 HSWLPDAHTAAPTVGSVLLAGVLLKMGTYGLVRIVLPIAPEGAHTFAPYLAAFAAVGIIY 302 Query: 289 ASLVSM------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 SL + + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ Sbjct: 303 GSLACLALARTGAKGDLKRLIAYSSVGHMGFVLLGIATLTPTGVNGALFANIAHGLITGL 362 Query: 343 LFFCVGVIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 LFF VG + DR T D+ G L PR ++ +A++GLPG +GF GE L Sbjct: 363 LFFLVGALKDRCGTTDLDQLSGTGGAALYGRAPRLGGLVAFAAVASLGLPGLAGFWGEML 422 Query: 398 VIMSVFQNSNTVA--------VLASFGVVLSALYSLWLYRKVVFG 434 + F+ ++ ++ LA G +L+A Y L + R+V G Sbjct: 423 AMFGAFEPADGLSRPAFLTFMALAGLGTLLTAAYLLVVVRRVCMG 467 >gi|295136973|ref|YP_003587793.1| NADH dehydrogenase subunit 4 [Lathyrus sativus] gi|293338695|gb|ADE43667.1| NADH dehydrogenase subunit 4 [Lathyrus sativus] Length = 497 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 147/443 (33%), Positives = 244/443 (55%), Gaps = 16/443 (3%) Query: 4 PFLSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+IV P G + LF G + ++ I I+ + + + + F Sbjct: 5 PWLTIVVVFPIAAGSLIFLFPHR---GNKVIRWYSICICLIDLLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q+ E Y WI +F Y LG+DG+SI ++LT +T L++ + + ++ + L Sbjct: 62 IQLTENYKWIHFFDFYWRLGIDGLSIGPILLTGLITTLATLAA-QPVTRKYQLFYFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 121 MYSGQIGPFSSRDILLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGASVFLLM 180 Query: 181 AIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 I+ + + + +P +++ + AF +FA+K P+ P HTWLP+ H + Sbjct: 181 GILGIGLYGSNEPTFNFETLINQSYPVALEIIFYTAFLIAFAVKSPIIPLHTWLPDTHGE 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG +R + F A F P + L I IIYA+ S Q + Sbjct: 241 AHYSTCMLLAGILLKMGAYGLVRINMEFFSHAHSIFCPWLMILGCIQIIYAAATSFGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDRL Sbjct: 301 LKKRIAYSSVSHMGFIIIGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + + +MA++ LPG SGF+ E +V + + + Sbjct: 361 LDEMGGMAIPMPKIFTIFTILSMASLALPGMSGFVAELIVFFGIITSQKYLFMMKILITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFG 434 + + G++L+ +Y L + R++ +G Sbjct: 421 VTAIGMILTPIYLLSILRQMFYG 443 >gi|206976914|ref|ZP_03237816.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus H3081.97] gi|217962780|ref|YP_002341356.1| NADH dehydrogenase subunit M [Bacillus cereus AH187] gi|206744880|gb|EDZ56285.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus H3081.97] gi|217066014|gb|ACJ80264.1| NADH dehydrogenase (ubiquinone), M subunit [Bacillus cereus AH187] Length = 500 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 148/425 (34%), Positives = 251/425 (59%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + G+S E WI + F + Y LG+DG Sbjct: 33 ALGLFGTVLPFGMAIVLACTYASGKSLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 92 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 93 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 151 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM--- 200 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 152 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILTS 211 Query: 201 ------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ ++++ +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 212 VGAGGGMAVPNSLQFGLFLSIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 271 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 272 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 331 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T +I A GGL ++P + Sbjct: 332 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSNITALGGLAKSVPVLSG 391 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 392 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQAEPVIAAAGVLGIILTAVYVLRATLQVTFG 451 Query: 435 VSKCE 439 + E Sbjct: 452 KKEWE 456 >gi|154362186|ref|YP_001109557.2| NADH dehydrogenase subunit 4 [Populus trichocarpa] gi|193806285|sp|A4GYW6|NU4C_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 143/436 (32%), Positives = 238/436 (54%), Gaps = 12/436 (2%) Query: 63 QMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WI++F Y LG+DG+S+ ++LT F+T L++ + I + R + L + Sbjct: 63 QLTESYKWINFFDFYWRLGIDGLSLGPILLTGFITTLATLAA-RPITRDSRLFHFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S ++LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT S+F+L Sbjct: 122 YSGQIGLFSSQNLLLFFIMWELELIPVYLLLAMWGGKQRLYSATKFILYTAGSSVFLLMG 181 Query: 182 IVVMCWEKKTSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + + + A +P +++ +I F +FA+K P+ P HTWLP+ H +A Sbjct: 182 ALGIAFYASNEPTFNFETSANQSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + L A F+ + + I IIYA+ S Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLVRINMELLSHAHSIFSSWLIIVGAIQIIYAASTSSGQKNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG+ IGI S G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 302 KKRIAYSSVSHMGFTIIGICSISDMGLNGAILQIISHGFIGAALFFLSGTSYDRIRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ ++ + ++A++ LPG SGF E +V + + + Sbjct: 362 DEMGGMATLMPKIFMMFSILSLASLALPGMSGFFAELVVFFGIITAKKYFLMPKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSK-CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G +L+ +Y L + R++ +G + D RE + I + + GIYP Sbjct: 422 TAVGTILTPIYLLSMLRQMFYGYKLFNARNSYFFDSGPRELFVSIAILLPVISIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENY 487 + + +I+ NY Sbjct: 482 VFSLSVDKVEAILSNY 497 >gi|229142030|ref|ZP_04270555.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus BDRD-ST26] gi|228641319|gb|EEK97625.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus BDRD-ST26] Length = 497 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 148/425 (34%), Positives = 251/425 (59%), Gaps = 23/425 (5%) Query: 37 ALGI--STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY--FCS---------YHLGVDG 83 ALG+ + + F ++ + + G+S E WI + F + Y LG+DG Sbjct: 30 ALGLFGTVLPFGMAIVLACTYASGKSLSLFDEKVKWIKFGDFAAVDKRWFSIYYELGIDG 89 Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 +S++++VLT L ++++ +I+ N + + + L+LE ++G F + +++LF+IFFE Sbjct: 90 LSLVMMVLTALLAMLAAIAAF-TIKRNLKAFYMLLLMLEIGMLGVFAAQNLMLFFIFFEI 148 Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM--- 200 +L PMF++IG WG AAY + +Y GS +L V+ + T++I +L + Sbjct: 149 TLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNITELKEILTS 208 Query: 201 ------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 P S+Q+ ++++ +FAIK+P+FP H W+ N H++A A + AG++LK+ Sbjct: 209 VGAGGGMAVPNSLQFGLFLSIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLHAGVLLKI 268 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP + FA +I L +I ++Y + ++++QTD +K++AYSSI+HMG V Sbjct: 269 GAYGIIRFGQGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSSISHMGIV 328 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ + G +GA+FQ++SHGL+++ LFF +GVI R T +I A GGL ++P + Sbjct: 329 LMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGVIEQRFGTSNITALGGLAKSVPVLSG 388 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + MA++GLPG SGF+ EFL + +FQ +A G++L+A+Y L +V FG Sbjct: 389 FFLAGGMASLGLPGMSGFVSEFLAFLGLFQAEPVIAAAGVLGIILTAVYVLRATLQVTFG 448 Query: 435 VSKCE 439 + E Sbjct: 449 KKEWE 453 >gi|156573600|gb|ABU85136.1| NADH-plastoquinone oxidoreductase subunit 4 [Yucca schidigera] Length = 489 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 149/442 (33%), Positives = 248/442 (56%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP I F + G + F + I + + + +V+ F Sbjct: 5 PWLTILVVLPIFAGSSIFFLPH--KGNKVFRWYTICICILELLLTTYVFCYHFQLDDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E + WI+ F + LG+DG+SI ++LT F+T L++W + N R + L + Sbjct: 63 QLEEDFKWINIFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +D ++ +P +++ ++ F ++A+K P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPTLDFERLANQSYPVTLEIILYFGFLIAYAVKSPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG +R + P A F+P + + I IIYA+ S+ Q ++ Sbjct: 242 HYSTCMLLAGILLKMGAYGLLRINMEFLPHAHSIFSPWLVIVGTIQIIYAASTSLGQRNL 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IA SS++HMG++ IGI S G+ GA+ Q+LSHG + +ALFF VG DR + Sbjct: 302 KKRIASSSVSHMGFIIIGIGSITDMGLNGAILQILSHGFIGAALFFLVGTSCDRTRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 362 DEMGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFLGIITSPKYLLMSKMLIIFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 422 MAIGMILTPIYLLSMLRQMFYG 443 >gi|304311506|ref|YP_003811104.1| NADH dehydrogenase I, chain M [gamma proteobacterium HdN1] gi|301797239|emb|CBL45459.1| NADH dehydrogenase I, chain M [gamma proteobacterium HdN1] Length = 510 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 141/433 (32%), Positives = 250/433 (57%), Gaps = 14/433 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 ++HL +DG+S L+V+L L + +SW +Q++ + + ++ + V+G FL++D+ Sbjct: 79 TFHLAMDGLSGLMVLLAALLGAIAVAASWNEVQKSVGLFHLHLSLMLAAVVGIFLAVDLF 138 Query: 136 LFYIFFEASLIPMFVIIGVWG-----GSERIYAAYKFFLY---TFFGSIFMLFAIVVMCW 187 LF++ +E L+PM+ +I +WG G R AA K F+Y + + + +V + Sbjct: 139 LFFVCWEVMLVPMYFLITLWGVESVSGIGRANAAIKMFIYGQGSGLLMLLGMLGLVFFHF 198 Query: 188 EKKTSSIID---LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + D L S P + +++ + FF +F +K+P PFH WLP+AH APT S Sbjct: 199 QNTKVLTFDYDQLKGTSLAP-EVAWFLMLGFFMAFVVKLPAVPFHGWLPDAHTHAPTGAS 257 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 V + G+++K YG IRF LPLFP AS+ FA V ++ ++ IIY +++ QT IK+LIA Sbjct: 258 VDITGLLIKTSAYGIIRFCLPLFPEASREFAEVAMWIGVVTIIYGGVLAYGQTHIKRLIA 317 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 Y SI+HMG++ IGI++ + ++G + M++ L ++ALF G +Y+RL T D+ G Sbjct: 318 YISISHMGFILIGIYAFNELALQGVVVMMVAAALSNAALFVLAGQLYERLGTFDMRQMEG 377 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P +++ FT A +GLPG FIGEF+V+ F+ + + +++ G+VL ++S Sbjct: 378 LWSRLPTLPPIILFFTCATLGLPGLGNFIGEFMVLFGAFKVAPVITAISTLGMVLGIVFS 437 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 L L + ++G S E L + RE+ M+ + VL + G++P P+ D+ + ++ + Sbjct: 438 LALVHRTIYGPSASEA--PLPAPNFREQSMLAVMMVLLLVIGLFPQPLLDSSAGAIAQVK 495 Query: 485 ENYTLKTGYSDSV 497 ++ T + ++ Sbjct: 496 QSMVPVTATASTL 508 >gi|182434579|ref|YP_001822298.1| putative NADH dehydrogenase chain M [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463095|dbj|BAG17615.1| putative NADH dehydrogenase chain M [Streptomyces griseus subsp. griseus NBRC 13350] Length = 501 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 171/491 (34%), Positives = 267/491 (54%), Gaps = 28/491 (5%) Query: 6 LSIVTFLPFLGVFVILFSSYLGC--GRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS++ FLP L V L S L G R+F G L +W+ D S + Sbjct: 2 LSLIVFLPAL---VALALSVLPARLGPRAFAGAWTATGLAQLALVLALWT--DLPASGYG 56 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E WI SYHLGVDG+S+ L+ LT + + SW+ + + +++ FL L+ Sbjct: 57 AVERREWIPSAGISYHLGVDGLSLPLLALTAVVFTATAVHSWRQ-ADRPKNFVLVFLALQ 115 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFA 181 ++ G F+SLD++LF++FF+ S++ M+ +I WG G+ AA FFLYTF GS+ +L Sbjct: 116 TVSTGLFVSLDLILFFLFFDLSIVFMYFVIAGWGIGAPAREAALTFFLYTFLGSLALLLG 175 Query: 182 IVVMCWEKKTSS--IIDLYAMSKFPFSIQY--WMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 +++ T + I +L A++ Y +A +K P+FPFHTWLP AH Sbjct: 176 FILLALAADTPTFDIPELAALNPLAGGGTYAALTLLALGIGLGVKTPVFPFHTWLPPAHT 235 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +AP AGS LAGI+LKMG YG +R +PL P + FA + +I++++ +LV++ Q Sbjct: 236 EAPAAGSAILAGILLKMGTYGFVRIAMPLLPAGWRQFALAFVVIGVISVVWGALVALAQN 295 Query: 298 DIKKLIAYSSIAHMGYVTIGI-FSGMKS---------GVEGAMFQMLSHGLVSSALFFCV 347 D+K++IAY+SI HMGYV + + +GM S GA++QM+SHGL+++ALF Sbjct: 296 DLKRMIAYTSINHMGYVLLALGAAGMVSADNEQARQLATTGAVYQMVSHGLITAALFLLA 355 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 G ++ R HT + AY GL P +A + V A++GLPG SGFI EF ++ + Sbjct: 356 GALHTRGHTYTMSAYSGLATRTPHFAALFSVAAFASLGLPGFSGFIAEFQILAGALTATP 415 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV----QQLKDLSLRERCMVYPIAVLTV 463 V+A+ G++++A L +++ G + + DLS E + P+ L Sbjct: 416 VATVIAATGILITAALFLLAISRMLTGPVRTPDAPGTPRPFPDLSAPELLSITPLLALAT 475 Query: 464 FFGIYPVPIRD 474 G+ P P+ D Sbjct: 476 VLGLLPRPVLD 486 >gi|309322020|ref|YP_003935008.1| NADH dehydrogenase subunit 4 [Candida alai] gi|308746497|gb|ADO51032.1| NADH dehydrogenase subunit 4 [Candida alai] Length = 453 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 140/394 (35%), Positives = 229/394 (58%), Gaps = 15/394 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFF 141 DGI+ L ++LT +L P ++S+W +I+ Y L ++I F+ DM+ FYI+F Sbjct: 52 DGIADLFILLTAYLIPLSLISNWNNIKSLI--YFELVFNLGIIIILNFMVQDMISFYIYF 109 Query: 142 EASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI-----VVMCWEKKTSSIID 196 EASL P+F++IG++G + + A+ LYT S+FML AI +V + + +S+I Sbjct: 110 EASLAPLFIMIGLYGANNKDKASDYILLYTLLSSLFMLLAIALYEIIVNNTDYQNASLIM 169 Query: 197 LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 L +Q ++I +K P+ P HTWLP H ++P AGS+ LAGI+LK+ Sbjct: 170 L------SLDLQCILFIGISLGIMVKTPLVPLHTWLPVVHSESPLAGSILLAGIILKLAI 223 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 Y IR +LP A+ + P+++ + +I IIY SL+++ QTD+K +IAYSSI+HM + Sbjct: 224 YAIIRLILPTLSEATIIYTPIVYIICIITIIYTSLITLRQTDLKVIIAYSSISHMAVCIL 283 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 GI + G+ G++ +HGLVS LF V G++YDR H R I+ Y GL+ MP ++ Sbjct: 284 GILANNSLGITGSLILSFAHGLVSPGLFIIVGGILYDRYHNRLIYYYNGLITYMPILSIY 343 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 +++ + N+G P + FIGE L + S + +A V+LSA Y + L ++ G+ Sbjct: 344 LIILSFCNVGTPLSINFIGEILSLGGALSKSPLIGSIAIISVLLSASYQMKLTNRLTGGI 403 Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K ++ D++ RE ++ I + T++FG++P Sbjct: 404 -KTPYIKLTADVTFRENILMLLIIIPTIWFGLFP 436 >gi|315635727|ref|ZP_07890990.1| NADH-quinone oxidoreductase subunit M [Arcobacter butzleri JV22] gi|315480024|gb|EFU70694.1| NADH-quinone oxidoreductase subunit M [Arcobacter butzleri JV22] Length = 495 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 152/495 (30%), Positives = 273/495 (55%), Gaps = 17/495 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ LS + FLP + F ++ ++ R+ +A +T+ L ++ FD S Sbjct: 1 MSSDILSFIIFLPAVVAFGLMITTRDVNAIRN---IAFLTTTVILGLVLKIYIEFDP-NS 56 Query: 61 SFQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q + WI+ Y +Y++G+DG S+ ++++ L P L W+ + Y I L Sbjct: 57 TMQFVTNVSWIETYGINYYVGLDGFSLTILMMIAILIPTSYLLLWEG---KTKGYWINML 113 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++++ V G+ LSLD++LFY F+E L+P+F++IG +G R++ K +YT GS+ ML Sbjct: 114 LVQTGVTGSLLSLDVVLFYFFWEVMLLPVFLLIGQYGFGNRVFTTIKVTVYTMAGSLLML 173 Query: 180 FAI----VVMCWEKKTSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 AI V E T S L +S +S + W+++AF +FAIKIP+FP HTW+ Sbjct: 174 IAILYLGVAYYSEFGTWSFAYDKLMTISTLDYSTKAWLFLAFLAAFAIKIPIFPLHTWIM 233 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 + APT L+ IM K+G Y +RF++P+FP F+ + L +IY + + Sbjct: 234 ETYKNAPTGAVFLLSSIMAKLGVYAIVRFMIPIFPDIYVEFSTWFVTIGLFGLIYFGIAA 293 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 ++Q DIK++ AYSS +H+ +++ GIFS G+ GA++ +++H + + ALF VG++ ++ Sbjct: 294 LMQDDIKRMFAYSSASHLSFISAGIFSLNAYGINGALYLIIAHAIATGALFLLVGLMQEQ 353 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 + I GG+ P + + V AN+GLPGT+GF+ E L+I +++ + + ++ Sbjct: 354 TGFKTIKDLGGIAKKAPIFTFIFAVMLFANVGLPGTNGFVSELLIIFGIYEFNAYLGYIS 413 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQL--KDLSLRERCMVYPIAVLTVFFGIYPVP 471 + V++ A Y LW++++ + + E +L +DL ++E + P +L G YP Sbjct: 414 ALTVIIGASYMLWMFQRAILQ-DRPEGAPELTMRDLKIKEIIGLAPWVILVFVMGFYPEI 472 Query: 472 IRDTFSVPLSSIIEN 486 D F ++ +++ Sbjct: 473 FMDKFEPTVTHYLQD 487 >gi|92090798|sp|Q6L3E0|NU4C_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 Length = 500 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 158/478 (33%), Positives = 260/478 (54%), Gaps = 15/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ +A I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHKGNKIVRWYTIA--ICLLEFLIMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N + + L + Sbjct: 63 QLKEDSKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-VTRNSQLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPGLDLERLINQSYPTTLEILLYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+L S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRVNMELLPHAHYLFSPWLVIIGAVQIIYAALTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFMLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +Y L + R++ +G + D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFHVPNKNFVDSGPRELFLLICIFLPVIGIGIYP 479 >gi|86149298|ref|ZP_01067529.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840080|gb|EAQ57338.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni CF93-6] Length = 495 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 154/457 (33%), Positives = 260/457 (56%), Gaps = 46/457 (10%) Query: 46 IFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 IF+ F+ V SF++++++ S+H+GVD I+++L++L++ + I S+ Sbjct: 42 IFADFLQGVSFDYNLSFKILKFF-------SFHVGVDSIALVLILLSSLM----IFLSFL 90 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 ++ + + LE ++G F + D LLFY+F+E SL+P+ I+GV+G R A Sbjct: 91 FLKLEQKALISCIFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFR--AGV 148 Query: 166 KFFLYTFFGSIFMLFAIV----------------VMCWEKKTSSIIDLYAMSKFPFSIQY 209 KFF+YTF GSI ML A++ + W+ S++ F+ Q Sbjct: 149 KFFIYTFAGSILMLVALIYQAYLNYQLLNIFTFDLEIWKNNASAV---------NFTEQL 199 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 ++ AFF +FAIK P+FP HTW P + +P SV L ++ KM +G + F LPLFP Sbjct: 200 LLFGAFFIAFAIKAPLFPLHTWAPKVYANSPILVSVML--VVFKMAPFGFLLFCLPLFPD 257 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 AS YF P+I L +++I+Y +L++ +IK+LIAYSSI+H+G + +GIFS G+ GA Sbjct: 258 ASVYFMPLIVALCIVSIVYNALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGA 317 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F M +HG+V+ ALF V ++Y R HT DI Y L P +++ M+ +A++ LP T Sbjct: 318 VFYMFAHGIVTGALFLMVELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLT 377 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 F+GEFL+++ + + + A+LA ++L A+Y ++RK+ F +K ++ SL Sbjct: 378 VSFVGEFLILLGIAKINLFYALLAGLVIILGAIYMFAVFRKIFF----MQKQSFIEGFSL 433 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 R +V + ++ + FG+ +P + P+ ++N Sbjct: 434 LFREIVALVCIVVMIFGLGLMP--NILLKPIQKDVDN 468 >gi|328952917|ref|YP_004370251.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfobacca acetoxidans DSM 11109] gi|328453241|gb|AEB09070.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfobacca acetoxidans DSM 11109] Length = 490 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 154/492 (31%), Positives = 268/492 (54%), Gaps = 16/492 (3%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFF--GVALGISTINFIFSLFVWSVFDKGR 59 + P+L+ + P +G+F+I+ + F V+L + I+ S++ + +DK Sbjct: 7 SFPYLTCMVLSPAIGLFIIVLLKE----EQKFLIRAVSLVSAGISLGLSIYTFVGYDKVL 62 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 Q +E Y W+ F ++ +GVDGI+ L++LT + +L+ W+ ++ +EY Sbjct: 63 GGLQFVEKYEWVKSFGITFFVGVDGINAPLLLLTGIVIFTGVLTMWE-LENRVKEYFAFM 121 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L L + V G F+S+D+ F++F+E +++PM+++I +WG + + YAA K LY GS + Sbjct: 122 LFLVTGVFGVFMSMDIFFFFLFYEIAVVPMYILILIWGSTRKEYAAMKLTLYLMAGSGLI 181 Query: 179 LFAIVVMCWEKK--TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 + I+++ T +I L+ + FP +Q +++ F + M+PFHTW P H Sbjct: 182 IPGILLLYSTSGLYTFDLIKLHGV-HFPPEMQKIIFVLLLFGFGVLAAMWPFHTWSPVGH 240 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V APTA S+ AG+++K+G YG +R + L P QY++ ++ L++ I+Y V + Q Sbjct: 241 VAAPTAVSMLHAGVLMKLGSYGILRVPMYLCPEGFQYWSQLMGLLAICGIVYGVFVGLAQ 300 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K +I YSS++HMG V +G+ +G G+ G++FQM SHG++++ F VG IYDR H Sbjct: 301 TDLKYVIGYSSVSHMGIVALGLATGTMDGLNGSVFQMFSHGVMTALFFSAVGYIYDRTHV 360 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 RDI GG MP + + + GLPG + F E LV ++ + ++A Sbjct: 361 RDIHLLGGFSKIMPVASAFFITAALCGAGLPGFASFWAELLVFIAAVKVFGIGGLIALAS 420 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS--LRERCMVYPIAVLTVFFGIYPVPIRD 474 +V+ AL++L + + + K +D+S L M+ IA L + FGI+P + D Sbjct: 421 IVVGALFALRVVQTSFYN-EPNPKFIHFEDVSPFLGLPRMIL-IATL-ILFGIFPSLMLD 477 Query: 475 TFSVPLSSIIEN 486 ++ I Sbjct: 478 VIKTAVAPFISG 489 >gi|60117373|gb|AAX14448.1| NADH dehydrogenase I, M subunit [Wolbachia endosymbiont of Drosophila mojavensis] Length = 264 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 123/264 (46%), Positives = 184/264 (69%), Gaps = 2/264 (0%) Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 MFPFHT LP+AHVQ+PT+GSV LAG+++KMG YG +RF +P+ P AS YF+ + LS+I Sbjct: 1 MFPFHTLLPDAHVQSPTSGSVILAGLLIKMGRYGFLRFSIPMLPQASLYFSNFVVVLSII 60 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 A+IYASLV+ Q DIKKLIAYSSIAHMG VT G+FS + GV G++FQM+SHGL+S+ALF Sbjct: 61 AVIYASLVAFAQDDIKKLIAYSSIAHMGIVTAGLFSFCEEGVLGSIFQMISHGLISAALF 120 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 CVG++Y R T +I Y G+V+ MP++ + ++F++A++GLPGTSGF GEFL ++ +F+ Sbjct: 121 LCVGMLYTRTGTLEIAKYFGIVNTMPKFGFMFILFSIASIGLPGTSGFAGEFLAMVGMFK 180 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + + G +LSA+Y L L +++++GVS + + D S+ ++ +AV + Sbjct: 181 SLGFFTGFIALGTILSAVYMLNLCKQIIWGVSYSKLLNNRLD-SIEFSVLIL-LAVFVIL 238 Query: 465 FGIYPVPIRDTFSVPLSSIIENYT 488 G YP + +++++ Y Sbjct: 239 LGFYPTLALNYLKPCMANLLVKYN 262 >gi|50234038|ref|YP_052815.1| NADH dehydrogenase subunit 4 [Oryza nivara] gi|109156633|ref|YP_654252.1| NADH dehydrogenase subunit 4 [Oryza sativa Indica Group] gi|68052576|sp|Q6ENA7|NU4C_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|148872795|sp|P0C323|NU4C_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|148872796|sp|P0C324|NU4C_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|148872797|sp|P0C325|NU4C_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|42795525|gb|AAS46092.1| NADH dehydrogenase subunit 4 [Oryza sativa Indica Group] gi|42795591|gb|AAS46157.1| NADH dehydrogenase subunit 4 [Oryza sativa Japonica Group] gi|42795655|gb|AAS46220.1| NADH dehydrogenase subunit 4 [Oryza sativa Japonica Group] gi|49615062|dbj|BAD26845.1| NADH dehydrogenase subunit 4 [Oryza nivara] gi|290790612|gb|ADD62872.1| NADH-plastoquinone oxidoreductase subunit 4 [Oryza sativa Japonica Group] Length = 500 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 160/499 (32%), Positives = 266/499 (53%), Gaps = 15/499 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ + I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHRGNKIVRWY--TMSICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDSKWIDVFNFHWRLGIDGLSLGSILLTGFMTTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ + F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGVSIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + +D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 482 VLSLSVDRVEALLSNYYPK 500 >gi|297192744|ref|ZP_06910142.1| NADH dehydrogenase subunit NuoM2 [Streptomyces pristinaespiralis ATCC 25486] gi|197721069|gb|EDY64977.1| NADH dehydrogenase subunit NuoM2 [Streptomyces pristinaespiralis ATCC 25486] Length = 530 Score = 239 bits (610), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 165/446 (36%), Positives = 243/446 (54%), Gaps = 30/446 (6%) Query: 55 FDKGR-SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE--N 110 FD + S Q +WI HLG+DGIS+ L+VLT LT C L S+ ++ + Sbjct: 66 FDHDQPSKMQATTDINWIAALDVRIHLGIDGISLPLLVLTALLTFLCALYSYFNMPAGPS 125 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + ++ LVLES + F LD+LLF++ FE LIPM+ +I WGG R AA+KF LY Sbjct: 126 PKAFVALLLVLESGTLATFAVLDLLLFFLAFEMVLIPMYFLIARWGGEARQPAAWKFILY 185 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS+ ML ++++ + T ++ L + S+Q +A A+K PM+P Sbjct: 186 TLLGSVVMLLGLLLIGLKAGTFDMVALATDNGRGLTTSVQVVAVLAIGLGLAVKTPMWPL 245 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 HTWLP+AH APT GSV LAG++LKMG YG +R +LP+ P + FAP + + + I+Y Sbjct: 246 HTWLPDAHTAAPTVGSVLLAGVLLKMGTYGFVRIVLPIAPDGMRTFAPYLAAFAAVGIVY 305 Query: 289 ASLV------SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 SL S D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ Sbjct: 306 GSLACLALARSGAGGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGL 365 Query: 343 LFFCVGVIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 LFF VG + DR T D+ G L PR ++ +A++GLPG +GF GE L Sbjct: 366 LFFLVGAVKDRYGTADLDTLAGATGAALYGRAPRLGGLLAFAAVASLGLPGLAGFWGEML 425 Query: 398 VIMSVFQNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK---- 445 + F ++ T + +FG +L+A Y L + R+V G E V + + Sbjct: 426 ALFGAFDPADGLSRPAFLTFMSIGAFGTLLTAAYLLVVVRRVCMGGRLPEAVDEQRPEPV 485 Query: 446 -DLSLRERCMVYPIAVLTVFFGIYPV 470 D+ E P+ LTV G++P Sbjct: 486 TDVRAYEFAAWSPLVALTVVAGLWPA 511 >gi|326382751|ref|ZP_08204441.1| NADH:ubiquinone oxidoreductase subunit M [Gordonia neofelifaecis NRRL B-59395] gi|326198341|gb|EGD55525.1| NADH:ubiquinone oxidoreductase subunit M [Gordonia neofelifaecis NRRL B-59395] Length = 555 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 155/491 (31%), Positives = 267/491 (54%), Gaps = 39/491 (7%) Query: 3 LPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 +P+L+++ LP + V V+L + G + V LG + + ++++ V + F Sbjct: 19 VPWLTVLWLLPAVASVVVMLLPADRGDNAKK---VGLGAALLTLVWAVVVATEFSSNAGG 75 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWK----------SIQEN 110 FQ++E WI F Y L +DG+ + L++LT LTP +L+ W+ S Sbjct: 76 FQLVEDVSWIPAFGARYTLALDGVGLALILLTAVLTPILLLAGWRDADPGDTGPSSRARR 135 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE---RIYAAYKF 167 Y+ L +E+MV+ +F++ D+L+FYIFFEA L+PM+ +IG +G + R AA KF Sbjct: 136 VHIYVALMLAVEAMVLMSFVATDVLMFYIFFEAMLVPMYFLIGGFGRATEEVRSRAAVKF 195 Query: 168 FLYTFFGSIFMLFAIVVMCWEKKTSSI----------IDLYAMS-----KFPFSIQYWMW 212 LY FG + ML A++ + S + +L A + + ++ Sbjct: 196 LLYNLFGGLIMLAAVIGLYVVSARSGLGPDGNGTFDFTELAAAAANGRLDASSTTLNLLF 255 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 + F +FA+K P++P H WLP+A V A +V + +M K+G + +RF + LFP AS Sbjct: 256 LGFLFAFAVKAPLWPLHAWLPDAAVSTTPAAAVMMMAVMDKVGTFAMLRFCIGLFPDASA 315 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 FAP I L++++I+Y ++ ++ Q D+ +LIAY+SI+H G++ +G+F+ G G+ Sbjct: 316 TFAPWISALAVVSIVYGAVCAIGQRDVMRLIAYTSISHFGFIVLGVFALTTQGQSGSALY 375 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 M++HGL ++ALF G + + + I YGG+ P A ++ +A + LPG + F Sbjct: 376 MVNHGLSTAALFLIAGFLVSQRGSALIADYGGVQKIAPVLAGTFLIAGLATLSLPGLAPF 435 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSK------CEKVQQLKD 446 + EFLV++ F A++AS +VLSA+Y LW Y++++ G + ++D Sbjct: 436 VSEFLVVIGTFTRYPVAAIIASSALVLSAVYILWTYQRMMGGPERLSATVDAASTPPIRD 495 Query: 447 LSLRERCMVYP 457 L LR++ +V P Sbjct: 496 LDLRQKAVVAP 506 >gi|229087779|ref|ZP_04219901.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock3-44] gi|228695538|gb|EEL48401.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus cereus Rock3-44] Length = 480 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 138/378 (36%), Positives = 232/378 (61%), Gaps = 10/378 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +G+DG S++++VLT L ++++ S+Q+N + + + L+LE ++G F + ++LL Sbjct: 66 YEIGIDGFSLVMMVLTALLATLAAIAAF-SVQKNIKGFYMLLLLLEIGMLGVFAAENLLL 124 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F++FFE +L PMF++IG WG AAY + +Y GS +L ++ + T++I Sbjct: 125 FFVFFEITLPPMFLLIGRWGKLNSEKAAYSYLIYNGIGSAILLIVFSILFAKTGTTNITA 184 Query: 197 LYA---------MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + S+Q ++IA +FAIK+P+FP H W+ N HV+A A + Sbjct: 185 LKDILTGAEASLLGDISTSMQLGLFIALMIAFAIKLPVFPLHRWMVNVHVEAHPAVVMLH 244 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG +RF LFP FA +I L +I ++Y + ++M+QTD +K++AYSS Sbjct: 245 AGVLLKIGAYGIVRFGKGLFPEQFHDFATLIAILGVINLLYGAFLAMIQTDFRKVLAYSS 304 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ + G++GA+FQ++SHGL+++ LFF +G+I R T DI GGL Sbjct: 305 ISHMGIVLMGLAALNAPGMKGALFQVVSHGLIAALLFFLLGMIERRFGTSDITKLGGLAK 364 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++ +MA++GLPG SGF+ EFL + +FQ +A + + G++L+A+Y L Sbjct: 365 QVPVLSGFLLAGSMASLGLPGMSGFVSEFLAFLGLFQGKPLLATVGALGIILTAVYVLRA 424 Query: 428 YRKVVFGVSKCEKVQQLK 445 +V FG + E ++ Sbjct: 425 TLQVTFGKKELEGKHDVR 442 >gi|307327973|ref|ZP_07607154.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces violaceusniger Tu 4113] gi|306886278|gb|EFN17283.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces violaceusniger Tu 4113] Length = 537 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 155/431 (35%), Positives = 234/431 (54%), Gaps = 38/431 (8%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSW--KSIQENFREYMIAFLVLESMVIGAFLSLDML 135 HLGVDG+S+ L+VLT LT L ++ + + R ++ L+LES + +F LD++ Sbjct: 88 HLGVDGVSLPLLVLTALLTFLSALYAYFNRPAGPSPRAFVALLLLLESGTLASFAVLDLM 147 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 LF++ FE LIPM+ +I WG ER AA++F LYT GS+ ML ++++ T ++ Sbjct: 148 LFFLAFEMVLIPMYFLINRWGSGERDRAAWRFILYTLLGSVVMLLGLLLVGLGGGTFDMV 207 Query: 196 DLYAM----------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 L + S + Q +A A+K PM+P H+WLP+AH APT GSV Sbjct: 208 ALASTASDSASGAGGSGLSHTTQLIAALAIIVGLAVKAPMWPLHSWLPDAHTAAPTVGSV 267 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM------VQTDI 299 LAG++LKMG YG +R +LP+ P A+ +AP + +++ IIY SL + + D+ Sbjct: 268 LLAGVLLKMGTYGLVRIVLPITPGAAHTYAPYLAAFAVVGIIYGSLACLALARTGAKGDL 327 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ LFF VG + DR T D+ Sbjct: 328 KRLIAYSSVGHMGFVLLGIATLTPTGVNGALFANIAHGLITGLLFFLVGALKDRSGTTDL 387 Query: 360 FAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN------- 407 G L PR ++ +A++GLPG +GF GE L + F ++ Sbjct: 388 DQLAGTSGAALYGRAPRLGGLLAFGAVASLGLPGLAGFWGEMLAMFGAFDPADGLSRPAY 447 Query: 408 -TVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-------KVQQLKDLSLRERCMVYPIA 459 T A FG +L+A Y L + R+V G E + L D+ E P+ Sbjct: 448 LTYMAFAGFGTLLTAAYMLIVVRRVCMGDHPIEPRVGTEPERPALADVRGYEFAAWSPLV 507 Query: 460 VLTVFFGIYPV 470 LTV G++P Sbjct: 508 ALTVLAGLWPA 518 >gi|21672448|ref|NP_660515.1| NADH dehydrogenase I chain M [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008863|sp|Q8K9X6|NUOM_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit M; AltName: Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1 subunit M gi|21623061|gb|AAM67726.1| NADH dehydrogenase I chain M [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 501 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/433 (34%), Positives = 250/433 (57%), Gaps = 21/433 (4%) Query: 61 SFQMIEYYH--------WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 ++Q+ Y H WI F +H+ VDG SI+++ LT FL IL SW I++N Sbjct: 54 TYQIQSYTHLSYQLILPWISSFGIQFHIAVDGFSIVMLFLTLFLGIIAILCSWNEIKKNE 113 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-----IYAAYK 166 + + +++ IG F++ D+ LF+ F+E LIPM+ +I +W + I A K Sbjct: 114 GFFYLNIMLVLMGTIGVFIAFDLFLFFFFWEIILIPMYFLISLWNQKKEDKKKCINIANK 173 Query: 167 FFLYTFFGSIFMLFAIVVMCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAI 221 FF+YT + ML +I+++ ++ I DL + SI+Y + + FF +F I Sbjct: 174 FFIYTQISGLIMLASILLLVLNYYINNKILTFNYDLLLIQPVDKSIEYIIMLGFFLAFII 233 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P+ PFH WL + H ++P G+V + G +LK YG +R+ LFP A++ FAP+ FL Sbjct: 234 KMPIVPFHGWLADFHERSPYCGAVDIIGALLKTAPYGLLRYNKMLFPNATEQFAPIAIFL 293 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +++ Y + V+ Q +IK+LIAYSSI+HMG + I I+ G + +G + Q+LS+ + +S Sbjct: 294 GFLSMFYGAWVAFSQVNIKRLIAYSSISHMGLMLIAIYGGNEISFQGLIIQILSNSISTS 353 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 ALF G IY L T+DI GGL N+ + F ++N+G+PGT FIGEFL++ Sbjct: 354 ALFILSGQIYKYLKTQDISEMGGLWTNIYWIPGFSLFFALSNLGIPGTGNFIGEFLILFG 413 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 +F+ V+++++ G++ S++YSL + +K+ +G+SK + + L+++E + + Sbjct: 414 IFKEHPLVSIISTIGIIFSSIYSLNMIQKIYYGLSKHDFPKFF--LNIKEFWISIVLIFA 471 Query: 462 TVFFGIYPVPIRD 474 +F G+ P I + Sbjct: 472 LIFLGLIPQKILN 484 >gi|11466847|ref|NP_039444.1| NADH dehydrogenase subunit 4 [Oryza sativa Japonica Group] gi|12050|emb|CAA33953.1| NADH dehydrogenase ND4 [Oryza sativa Japonica Group] gi|226670|prf||1603356CX NADH dehydrogenase ND4 Length = 500 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 160/499 (32%), Positives = 265/499 (53%), Gaps = 15/499 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ + I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHRGNKIVRWY--TMSICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDSKWIDVFNFHWRLGIDGLSLGSILLTGFMTTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ + F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGASIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + +D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 482 VLSLSVDRVEALLSNYYPK 500 >gi|118614542|ref|YP_899457.1| NADH-plastoquinone oxidoreductase subunit 4 [Sorghum bicolor] gi|125956614|sp|A1E9X4|NU4C_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|118201176|gb|ABK79546.1| NADH-plastoquinone oxidoreductase subunit 4 [Sorghum bicolor] Length = 500 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 160/499 (32%), Positives = 267/499 (53%), Gaps = 15/499 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ +A I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHKGNKIVRWYTIA--ICLLEFLIMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N + + L + Sbjct: 63 QLKEDSKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-VTRNSQLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPGLDLERLINQSYPTTLEILLYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRVNMELLPHAHYLFSPWLVIIGAVQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFMLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFHVPNKNFVDSGPRELFLLICIFLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 482 VLSLSVDRVEALLSNYYTK 500 >gi|52076629|dbj|BAD45530.1| NADH dehydrogenase subunit 4 [Oryza sativa Japonica Group] gi|52076915|dbj|BAD45927.1| NADH dehydrogenase subunit 4 [Oryza sativa Japonica Group] Length = 500 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 160/499 (32%), Positives = 265/499 (53%), Gaps = 15/499 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ + I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHRGNKIVRWY--TMSICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDSKWIDVFNFHWRLGIDGLSLGSILLTGFMTTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ + F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGVSIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R + +G + +D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRHMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 482 VLSLSVDRVEALLSNYYPK 500 >gi|157736564|ref|YP_001489247.1| NADH-quinone oxidoreductase, M subunit [Arcobacter butzleri RM4018] gi|157698418|gb|ABV66578.1| NADH-quinone oxidoreductase, M subunit [Arcobacter butzleri RM4018] Length = 495 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/495 (30%), Positives = 273/495 (55%), Gaps = 17/495 (3%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 M+ LS + FLP + F ++ ++ R+ +A +T+ L ++ FD S Sbjct: 1 MSSDILSFIIFLPAVVAFGLMITTRDVNAIRN---IAFLTTTVILGLVLKIYIEFDP-NS 56 Query: 61 SFQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 + Q + WI+ Y +Y++G+DG S+ ++++ L P L W+ + Y I L Sbjct: 57 TMQFVTNVSWIETYGINYYVGLDGFSLTILMMIAILIPTSYLLLWEG---KTKGYWINML 113 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 ++++ V G+ LSLD++LFY F+E L+P+F++IG +G +++ K +YT GS+ ML Sbjct: 114 LVQTGVTGSLLSLDVVLFYFFWEVMLLPVFLLIGQYGFGNKVFTTIKVTVYTMAGSLLML 173 Query: 180 FAI----VVMCWEKKTSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 AI V E T S L +S +S + W+++AF +FAIKIP+FP HTW+ Sbjct: 174 IAILYLGVAYYSEFGTWSFAYDKLMTISTLDYSTKAWLFLAFLAAFAIKIPIFPLHTWIM 233 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 + APT L+ IM K+G Y +RF++P+FP F+ + L +IY + + Sbjct: 234 ETYKNAPTGAVFLLSSIMAKLGVYAIVRFMIPIFPDIYVEFSTWFVAIGLFGLIYFGIAA 293 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 ++Q DIK++ AYSS +H+ +++ GIFS G+ GA++ +++H + + ALF VG++ ++ Sbjct: 294 LMQDDIKRMFAYSSASHLSFISAGIFSLNAYGINGALYLIIAHAIATGALFLLVGLMQEQ 353 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 + I GG+ P + + V AN+GLPGT+GF+ E L+I +++ + + ++ Sbjct: 354 TGFKTIKDLGGIAKKAPIFTFIFAVMLFANVGLPGTNGFVSELLIIFGIYEFNAYLGYIS 413 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQL--KDLSLRERCMVYPIAVLTVFFGIYPVP 471 + V++ A Y LW++++ + + E +L +DL ++E + P +L G YP Sbjct: 414 ALTVIIGASYMLWMFQRAILQ-DRPEGAPELTMRDLKIKEIIGLAPWVILVFVMGFYPEI 472 Query: 472 IRDTFSVPLSSIIEN 486 D F ++ +++ Sbjct: 473 FMDKFEPTVTHYLQD 487 >gi|159106914|ref|YP_001531332.1| NADH-plastoquinone oxidoreductase subunit 4 [Lolium perenne] gi|193806245|sp|A8Y9D7|NU4C_LOLPR RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|158934448|emb|CAO86026.1| NADH-plastoquinone oxidoreductase subunit 4 [Lolium perenne] Length = 502 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 166/502 (33%), Positives = 271/502 (53%), Gaps = 19/502 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ ++ I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHRGNKIVRWYTIS--ICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDYKWIDIFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSII--DLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ++ M S+ + DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H Sbjct: 182 VLGMGLYGYGSNELGLDLERLINQSYPATLEILLYFGFLIAYAVKLPIIPLHTWLPDTHG 241 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q Sbjct: 242 EAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAIQIIYAASTSLGQR 301 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 + KK IAYSSI+HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ Sbjct: 302 NFKKRIAYSSISHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTASDRMRLV 361 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 362 YLEELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLIT 421 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIY 468 + + G++L+ +Y L + R++ +G K V D RE ++ I + + GIY Sbjct: 422 FVMAIGMILTPIYLLSMLRQMFYGY-KLFNVPNANFVDSGPRELFILICIFLPVIGIGIY 480 Query: 469 PVPIRDTFSVPLSSIIENYTLK 490 P + + +++ NY K Sbjct: 481 PDFVLSLSIDRVEALVSNYYPK 502 >gi|284928737|ref|YP_003421259.1| NADH dehydrogenase subunit M [cyanobacterium UCYN-A] gi|284809196|gb|ADB94901.1| NADH dehydrogenase subunit M [cyanobacterium UCYN-A] Length = 486 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/421 (35%), Positives = 241/421 (57%), Gaps = 9/421 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 F+ Q E + WI +Y LGVDG+S+ L+ L LT I SS K+IQ+ Sbjct: 52 FNINDPEIQFYESFLWIKKIGLNYSLGVDGLSLPLLCLNNLLTLITIYSSGKNIQKQNFY 111 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y + F +L S + GAFLS D+LLF IF+E IP++ ++ +WGG +R YA+ KF +YT Sbjct: 112 YGLIF-ILNSGISGAFLSQDLLLFLIFYELETIPLYFLLVIWGGIKRDYASIKFLIYTSI 170 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTW 231 I +L + + + W + + + +++ S+ Q ++ I +IKIP+ PFH+W Sbjct: 171 SGILVLISFLGLVWLAEIPTF-NYWSLRSHSLSLTHQLFLLIPLLIGLSIKIPIVPFHSW 229 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+ HV+A T S+ LAGI+LK+G YG +RF + LFP + +PV+ L++++ +Y + Sbjct: 230 LPDTHVEASTPVSILLAGILLKLGTYGLLRFGIGLFPDGWVFLSPVLATLAVVSALYGAS 289 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ Q D+KK++AYSSIAHM Y+ + + + A+FQM+SHGL+S+ LF VG++Y Sbjct: 290 CAIAQKDMKKVVAYSSIAHMAYILLASSASTPLSLNAAVFQMISHGLISALLFLLVGIVY 349 Query: 352 DRLHTRDIFAYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 ++ +RD+ GL H +P ++++ MA+ G+PG GFI EFLV F Sbjct: 350 EKTGSRDVDFLSGLFNSQHGLPITGSLIILGVMASSGIPGMIGFIAEFLVFRGSFPVFPI 409 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 +L G L+A+Y L + +V FG ++ + + ER + VL + GI Sbjct: 410 QTLLCLIGSGLTAVYFLLMVNRVFFG-RLTPRLVNIPRIYWSERSPALLLTVLIITLGIQ 468 Query: 469 P 469 P Sbjct: 469 P 469 >gi|152977478|ref|YP_001376995.1| NADH dehydrogenase subunit M [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026230|gb|ABS24000.1| proton-translocating NADH-quinone oxidoreductase, chain M [Bacillus cytotoxicus NVH 391-98] Length = 500 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 163/498 (32%), Positives = 272/498 (54%), Gaps = 32/498 (6%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS F P L +F++LF+ R+ G+ L + + ++ + + G++ Sbjct: 5 LLSFFIFSPLLSIFLLLFTPKTKV--RAVRGIGLFGTMLPLGTAILLACAYASGKNLAIF 62 Query: 65 IEYYHWIDY-----------FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 E WI + Y LG+DG S+++++L + L L+++ SIQ + Sbjct: 63 SERVKWIQFGNFPELDKSLFIIDYELGMDGFSLVMMMLASLLVMLAALTAF-SIQHQVKA 121 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 + + L+LE V+G F + ++ LF+IFFE +L PMF++IG WG AAY + +Y Sbjct: 122 FYMLLLMLEIGVLGVFAAENLFLFFIFFEITLPPMFLLIGKWGKLSSEQAAYSYLIYNGI 181 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAM---------SKFPFSIQYWMWIAFFCSFAIKIP 224 GS +L ++ + T++ +L + + S+Q ++IA +F+IK+P Sbjct: 182 GSAILLIIFSILFAKTGTTNFEELKTILAGTDSSFFNGMSHSLQLSIFIALMLAFSIKLP 241 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 +FP H W+ N HV+A A + AG++LK+G YG IRF LFP Q FA ++ L ++ Sbjct: 242 LFPLHRWMVNVHVEAHPAVVMIHAGVLLKIGAYGMIRFGKGLFPEQFQSFATILAILGVV 301 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +Y + ++ +QTD +K++AYSSI+HMG V IG+ + +GV+GA+FQ++SHGL+++ LF Sbjct: 302 NFLYGAFLAFIQTDFRKVLAYSSISHMGIVLIGLAALNAAGVQGALFQVVSHGLIAALLF 361 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 F +GVI +R T I GGL +P + ++ +MA++GLPG SGF+ EFL + +FQ Sbjct: 362 FLLGVIEERFGTSHITKLGGLAKQVPILSACLLAGSMASLGLPGMSGFVSEFLAFLGLFQ 421 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD-----LSLRERCMVYPIA 459 VA + G++L+A Y L +V FG + E ++ + L C++ I Sbjct: 422 EKPIVAAVGVLGIILTAAYVLRATLQVTFGKRELEGKPDMRGWEYIPVLLLLACII-TIG 480 Query: 460 VLTVFFGIYPVPIRDTFS 477 VL G P++DT Sbjct: 481 VLPDLLG---EPLQDTLK 495 >gi|313202850|ref|YP_004041507.1| NADH dehydrogenase subunit m [Paludibacter propionicigenes WB4] gi|312442166|gb|ADQ78522.1| NADH dehydrogenase subunit M [Paludibacter propionicigenes WB4] Length = 494 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 228/387 (58%), Gaps = 11/387 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y +GVDGIS+ +++L++ + + +SWK I +E+ + + +L V G F+S+D+ Sbjct: 77 YSVGVDGISVAMLILSSIIVFTGVFASWK-IDPLPKEFFLWYSLLSIGVYGFFISIDLFT 135 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK--KTSSI 194 ++++E +LIPM+++IGVWG ++ YAA K L GS +L I+ + + T +I Sbjct: 136 MFMYYEIALIPMYLLIGVWGSGKKEYAAMKLTLMLMGGSALLLVGILGIYFASGATTMNI 195 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +++ + P +Q + + F F + +FPFHTW P+ H APTA S+ AG+++K+ Sbjct: 196 LEIAKLHSIPVEMQRYFFPLTFMGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKL 255 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYGC R + L P A+ A + ++ I+++Y + ++ QTD+K + AYSS++H G V Sbjct: 256 GGYGCFRVAMYLMPEAAHEMAWIFLIMTGISVVYGAFGAIHQTDLKYINAYSSVSHCGLV 315 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I ++ GA+ QMLSHGL+++ F +G+IY R HTRDI GGL+ MP V Sbjct: 316 LFAILMMNETAATGAIMQMLSHGLMTALFFALIGMIYGRTHTRDIRLMGGLMKIMPFLGV 375 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN------TVAVLASFGVVLSALYSLWLY 428 ++ MA++GLP SGF+ E + + FQ+++ T+A AS +V++A+Y L + Sbjct: 376 SYVIAGMASLGLPSLSGFVAEMTIFVGSFQHTDMFHRVLTIAACAS--IVITAVYILRVV 433 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 K++ G + ++L D ER V Sbjct: 434 GKIILGPVFDKHHEELTDAVWYERISV 460 >gi|197107596|gb|ACH42378.1| NADH dehydrogenase subunit 4 [Petrospongium berkeleyi] Length = 232 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 120/229 (52%), Positives = 167/229 (72%), Gaps = 6/229 (2%) Query: 89 VVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 ++LTT + P C+L+SW + N + Y+I+FL +E +++ F +LD+L FYIFFEA LIPM Sbjct: 4 IILTTLIFPLCLLASWSFNKGNLKTYLISFLSMELILLLVFTNLDLLFFYIFFEAVLIPM 63 Query: 149 FVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS- 206 F++IG++G +R I AAY FFLYT FGS+FML ++ + ++S A+SK FS Sbjct: 64 FLVIGIYGSRQRKIRAAYMFFLYTLFGSLFMLLGVIYIYLVAGSTSY---EALSKVSFSS 120 Query: 207 -IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 Q W+W+AFF SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L Sbjct: 121 YDQKWLWLAFFASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLG 180 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 LFP AS +F P++F LSL+ ++Y SL ++ QTD+K+LIA++S+AHM V Sbjct: 181 LFPEASFFFTPLVFSLSLLGVVYTSLTAIRQTDLKRLIAFTSVAHMNLV 229 >gi|193806226|sp|A6MMR3|NU4C_DIOEL RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|148668101|gb|ABR01485.1| NADH-plastoquinone oxidoreductase subunit 4 [Dioscorea elephantipes] Length = 501 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 160/496 (32%), Positives = 266/496 (53%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP I F + G ++ + ++ + +F + F Q Sbjct: 6 PWLTIIVVLPIFAASSIFFLPHKGNKVFRWYTTCICLTELLLTTYVFCYH-FQLDDQLIQ 64 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E I+ F + LG+DG+SI ++LT F+T L++W + N R + + LV+ Sbjct: 65 LEEDLKCINIFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRNSRLFYLLMLVMY 123 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 124 SGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLIGV 183 Query: 183 VVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + M +D ++ +P +++ + F ++A+K P+ P HTWLP+ H +A Sbjct: 184 LGMGLYGSNEPTLDFERLANQSYPVALEIIFYFGFLIAYAVKSPIIPLHTWLPDTHGEAH 243 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++K Sbjct: 244 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSLFSPWLVIVGTIQIIYAASTSFGQRNLK 303 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IA SS++HMG++ IGI S +G+ GA+ Q+LSHG + +ALFF G DR+ + Sbjct: 304 KRIACSSVSHMGFIIIGIGSITDTGLNGAILQILSHGFIGAALFFLSGTSCDRIRFVYLD 363 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 364 EMGGISLPMPKIFTMFSSFSMASLALPGMSGFVAELVVFLGIITSPKYLLMPKILITFVM 423 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G K V D RE + I + + GIYP Sbjct: 424 AIGMILTPIYLLSMSRQMFYGY-KLFNVPNSFFVDSGPRELFVSICIFLPVIGIGIYPDC 482 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 483 VFSLSVDKIEGILSNY 498 >gi|290790681|gb|ADD62940.1| NADH-plastoquinone oxidoreductase subunit 4 [Oryza meridionalis] Length = 500 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 160/499 (32%), Positives = 265/499 (53%), Gaps = 15/499 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ + I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHRGNKIVRWY--TMSICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDSKWIDVFNFHWRLGIDGLSLGSILLTGFMTTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ + F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGVSIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G +D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFHVPNANFEDSGPRELFLLICIFLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 482 VLSLSVDRVEALLSNYYPK 500 >gi|260677467|ref|YP_003208249.1| NADH-plastoquinone oxidoreductase subunit 4 [Coix lacryma-jobi] gi|209361405|gb|ACI43320.1| NADH-plastoquinone oxidoreductase subunit 4 [Coix lacryma-jobi] Length = 500 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 157/478 (32%), Positives = 259/478 (54%), Gaps = 15/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ +A I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHKGNKIVRWYTIA--ICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N + + L + Sbjct: 63 QLKEDSKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-VTRNSQLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPGLDLERLINQSYPTTLEILLYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRVNMELLPHAHYLFSPWLVIIGAVQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFMLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +Y L + R++ +G + D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFNVPNKNFVDSGPRELFLLICIFLPVIGIGIYP 479 >gi|170076805|ref|YP_001733443.1| NAD(P)H-quinone oxidoreductase subunit M [Synechococcus sp. PCC 7002] gi|2232047|gb|AAB62185.1| NADH dehydrogenase subunit 4 [Synechococcus sp. PCC 7002] gi|169884474|gb|ACA98187.1| proton-translocating NADH-quinone oxidoreductase (NADH dehydrogenase subunit 4) [Synechococcus sp. PCC 7002] Length = 498 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 152/471 (32%), Positives = 257/471 (54%), Gaps = 16/471 (3%) Query: 6 LSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGV-ALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS + FLP +G+ I LF L + F V L IS+ + +L ++ D G Q Sbjct: 2 LSFLLFLPLVGIGAIALFPRPLTRIVATVFTVVTLAISS-GLLINL---NLQDAG---MQ 54 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E+++W+ +Y+LGVDG+S+ L+VL + LT I S +S + Y L++ Sbjct: 55 YTEFHNWLSILGLNYNLGVDGLSLPLIVLNSLLTLVAIYSIGES-NHRPKLYYSLILLIN 113 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S + GA ++ ++LLF++F+E LIP +++I +WGG ++ YA+ KF +YT + +L A Sbjct: 114 SGITGALIANNLLLFFLFYEIELIPFYLLIAIWGGEKKGYASTKFLIYTAISGLCVLAAF 173 Query: 183 VVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + + W ++S+ + + F+ + + F IKIP+ P HTWLP+A+V+A Sbjct: 174 LGIVWLSQSSNFDFENLTLENLEFNTKVILLTILLIGFGIKIPLVPLHTWLPDAYVEANP 233 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 A +V L G+ K+G YG +RF L LFP +P + + ++++Y SL ++ Q D+K+ Sbjct: 234 AVTVLLGGVFAKLGTYGLVRFGLQLFPDVWSTVSPALAVIGTVSVMYGSLAAIAQRDLKR 293 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 ++AYSSI HMGY+ + +G + + GA+ QM+SH L+ + LF VG+I ++ TRD+ Sbjct: 294 MVAYSSIGHMGYILVSTAAGTELSLLGAVAQMISHSLILALLFHLVGIIERKVGTRDLDV 353 Query: 362 YGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 GL V +P + ++++ MA+ G+PG GF+ EFLV F + Sbjct: 354 LNGLMNPVRGLPLTSSLLILAGMASAGIPGLVGFVAEFLVFQGSFSRFPIPTLFCIIASG 413 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+A+Y + L + FG K + E+ + V+ +F G+ P Sbjct: 414 LTAVYFVILLNRTCFGRLDSHTAYYPKVFA-SEKIPAIALTVIILFLGLQP 463 >gi|288801151|ref|ZP_06406607.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332085|gb|EFC70567.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 488 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 134/378 (35%), Positives = 219/378 (57%), Gaps = 15/378 (3%) Query: 102 SSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI 161 +SW+ ++ +EY + F++L V G F+S DM ++F+E +LIPM+++IGVWG ++ Sbjct: 89 ASWQ-LKPLTKEYFLWFVLLSIGVYGFFISTDMFTMFMFYEVALIPMYLLIGVWGSGKKE 147 Query: 162 YAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF 219 YAA K L GS ++ I+ + + T ++ +L A+ P +Q ++ F F Sbjct: 148 YAAMKLTLMLMGGSALLIIGILGIYFFSGATTMNVQELAALHNIPSGVQNVLFPFVFIGF 207 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 + +FPFHTW P+ H APTA S+ AG+++K+GGYGC R + L P A+ + + Sbjct: 208 GVLGALFPFHTWSPDGHASAPTAVSMLHAGVLMKLGGYGCFRIAMYLLPNAAHDLSWIFL 267 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 L+ +++Y + + VQTD+K + AYSS++H G V + ++ GA+ QMLSHGL+ Sbjct: 268 ILTTCSVVYGAFSACVQTDLKYINAYSSVSHCGLVLFALLMMTQTSCTGAVLQMLSHGLM 327 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 ++ F +G+IY R HTRDI GGL+ MP +V +V +AN+GLPG SGF+ E V Sbjct: 328 TALFFALIGMIYGRTHTRDIRQLGGLMKIMPFLSVGYVVAGLANLGLPGFSGFVAEMTVF 387 Query: 400 MSVFQNSNT----VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER--- 452 + F+N +T ++A +V +A+Y L K+++G ++L D + ER Sbjct: 388 VGSFENGDTFHRVCTIIACTSIVTTAVYILRTVGKILYGKVADPHFEELTDATWDERFSV 447 Query: 453 -CMVYPIAVLTVFFGIYP 469 C+++ +A L GI P Sbjct: 448 ICLIFCVAAL----GIAP 461 >gi|50510211|dbj|BAD31379.1| chloroplast NADH dehydrogenase ND4 [Oryza sativa Japonica Group] Length = 501 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 161/500 (32%), Positives = 268/500 (53%), Gaps = 16/500 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ + I + F+ + + F Sbjct: 5 PWLTILVVLPIFASSLIFFLPHRGNKIVRWY--TMSICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDSKWIDVFNFHWRLGIDGLSLGSILLTGFMTTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLF 180 S IG F S D+LLF+I +E LIP+++++ +WGG +R +Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGGKRRLYSATKFILYTAGGSIFFLI 181 Query: 181 AIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ M +DL + +P +++ + FF ++A+K+P+ P HTWLP+ H + Sbjct: 182 GVLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFFIAYAVKLPIIPLHTWLPDTHGE 241 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 A + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 AHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRN 301 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ Sbjct: 302 FKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVY 361 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 362 LEELGGVTIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITF 421 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +Y L + R++ +G + +D RE ++ I + + GIYP Sbjct: 422 VMAIGMILTPIYLLSMLRQMFYGYKLFHVPNENFEDSGPRELFLLICIFLPVIGIGIYPD 481 Query: 471 PIRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 482 FVLSLSVDRVEALLSNYYPK 501 >gi|194033196|ref|YP_002000535.1| NADH dehydrogenase subunit 4 [Brachypodium distachyon] gi|193075604|gb|ACF08687.1| NADH dehydrogenase subunit 4 [Brachypodium distachyon] Length = 500 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 163/500 (32%), Positives = 268/500 (53%), Gaps = 17/500 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ ++ I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHRGNKIVRWYTIS--ICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDSKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPGLDLERLINQSYPATLEILLYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAIQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN-------SNTVAVL 412 GG+ +P+ + F+MA++ LPG SGF+ E LV + + + + Sbjct: 362 EELGGISILIPKIFTMFSSFSMASLALPGMSGFVAELLVFFGLITSPKFLLMPKTLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+ +Y L + R++ +G K V D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGY-KLFNVPNANFMDSGPRELFLLICIFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 481 FVLSLSVDRVEALLSNYYPK 500 >gi|37521651|ref|NP_925028.1| NAD(P)H-quinone oxidoreductase subunit D4 [Gloeobacter violaceus PCC 7421] gi|35212649|dbj|BAC90023.1| NADH dehydrogenase subunit 4 [Gloeobacter violaceus PCC 7421] Length = 510 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 167/478 (34%), Positives = 261/478 (54%), Gaps = 26/478 (5%) Query: 6 LSIVTFLPFLGVFVILFSSYLGC---------GRRSFFGVALGISTINFIFSLFVWSVFD 56 LS++ +LP LG V+ GC RR +AL ++++ + S + ++ Sbjct: 2 LSLLVWLPILGAAVV------GCWPAGVSAVWPRR----IALLVASLGLVLSAVLAFQYN 51 Query: 57 KGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115 Q E+ W+ SY LG+DG+S+ L++L FL I SS +++Q R Y Sbjct: 52 PADGGLQFREFVPWMTSLGLSYELGIDGLSLPLLLLNAFLVWIAIFSSDENVQRP-RLYY 110 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 L+L V+GAF + + LLF++F+E LIP++++I +WGG R YAA KF LYT Sbjct: 111 ALLLLLCGGVVGAFATQNALLFFLFYELELIPLYLLIAIWGGPRRNYAATKFLLYTAISG 170 Query: 176 IFMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 I +L A + ++ ++ A P + Q+ + A +F IKIP+ PFHTWLP+ Sbjct: 171 IMVLVAFFGLAGLAGIANYSYEVLAAHNLPLATQFLLLGAVLVAFGIKIPLVPFHTWLPD 230 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+A T S+ LAG++LK+G YG +RF L FP A AP + ++++++Y L ++ Sbjct: 231 AHVEASTPVSLLLAGVLLKLGTYGLLRFGLGFFPEAWSVAAPWLAGWAVVSVLYGCLTAI 290 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q D+KK++AYSSI HMGY+ + + + GA+ QM+SHGL+S LF VGV+Y + Sbjct: 291 AQKDMKKMVAYSSIGHMGYILLAAAAATPLSLLGAVAQMVSHGLISGLLFLLVGVVYKKT 350 Query: 355 HTRDIFAYGGLV---HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 TRDI GL+ +P +M++ MA+ G+P GF+ EF++ + + + Sbjct: 351 GTRDIDVLCGLLAPERGLPFVGSLMILAVMASAGIPSMVGFVAEFIIFRASYAVFPVQTL 410 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L G L+A+Y L L + FG + L + ER IA+L VF G+ P Sbjct: 411 LCILGTGLTAVYLLILINRAFFGRLPAQ-FANLPQVRWSERLPGLAIALLVVFLGLQP 467 >gi|88596338|ref|ZP_01099575.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|121612466|ref|YP_001001207.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|167006100|ref|ZP_02271858.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|218563156|ref|YP_002344936.1| NADH dehydrogenase I chain M [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|87249620|gb|EAQ72579.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|88191179|gb|EAQ95151.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112360863|emb|CAL35664.1| NADH dehydrogenase I chain M [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926762|gb|ADC29114.1| NADH dehydrogenase I chain M [Campylobacter jejuni subsp. jejuni IA3902] gi|315927687|gb|EFV07018.1| proton-translocating NADH-quinone oxidoreductase, chain M family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 495 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 153/457 (33%), Positives = 259/457 (56%), Gaps = 46/457 (10%) Query: 46 IFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 IF+ F+ V SF++++++ S+H+GVD I+++L++L++ + I S+ Sbjct: 42 IFADFLQGVSFDYNLSFKILKFF-------SFHVGVDSIALVLILLSSLM----IFLSFL 90 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 ++ + + LE ++G F + D LLFY+F+E SL+P+ I+GV+G R A Sbjct: 91 FLKLEQKALISCIFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFR--AGV 148 Query: 166 KFFLYTFFGSIFMLFAIV----------------VMCWEKKTSSIIDLYAMSKFPFSIQY 209 KFF+Y F GSI ML A++ + W+ S++ F+ Q Sbjct: 149 KFFIYAFAGSILMLVALIYQAYLNYQLLNIFTFDLEIWKNNASAV---------NFTEQL 199 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 ++ AFF +FAIK P+FP HTW P + +P SV L ++ KM +G + F LPLFP Sbjct: 200 LLFGAFFIAFAIKAPLFPLHTWAPKVYANSPILVSVML--VVFKMAPFGFLLFCLPLFPD 257 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 AS YF P+I L +++I+Y +L++ +IK+LIAYSSI+H+G + +GIFS G+ GA Sbjct: 258 ASVYFMPLIVALCIVSIVYNALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGA 317 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F M +HG+V+ ALF V ++Y R HT DI Y L P +++ M+ +A++ LP T Sbjct: 318 VFYMFAHGIVTGALFLMVELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLT 377 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 F+GEFL+++ + + + A+LA ++L A+Y ++RK+ F +K ++ SL Sbjct: 378 VSFVGEFLILLGIAKINLFYALLAGLVIILGAIYMFAVFRKIFF----MQKQSFIEGFSL 433 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 R +V + ++ + FG+ +P + P+ ++N Sbjct: 434 LFREIVALVCIVVMIFGLGLMP--NILLKPIQKDVDN 468 >gi|282899507|ref|ZP_06307472.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Cylindrospermopsis raciborskii CS-505] gi|281195614|gb|EFA70546.1| Proton-translocating NADH-quinone oxidoreductase, chain M [Cylindrospermopsis raciborskii CS-505] Length = 504 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 159/471 (33%), Positives = 256/471 (54%), Gaps = 11/471 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ +LP +G +I + V+L ++ + +++ F+ FD Q Sbjct: 2 LSVLIWLPIIGAAIISILPDTIIPKNRVRLVSLTVAFLVLLWNAFILLKFDITNPGMQFS 61 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 EY W + +Y LGVDG+SIL+++L + LT I SS ++ + Y + LV Sbjct: 62 EYLPWNETLGLAYQLGVDGLSILMLILNSLLTWIAIYSSSENTERPKLFYSLVLLV-SGG 120 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V GAFL+ ++LLF++F+E LIP +++I +WGG+ R YA KF +YT +L + Sbjct: 121 VAGAFLAQNLLLFFLFYELELIPFYLLISIWGGNRRAYAGMKFLIYTAVSGALILATFLG 180 Query: 185 MCWEKKTSS-IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + W + S +D +IQ + F IKIP+ PFHTWLP+A+V+A Sbjct: 181 IVWLSGSHSFALDAVNTQNLSTTIQVVLLAGIILGFGIKIPLIPFHTWLPDAYVEASAPI 240 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 ++ L GI+ K+G YG +RF LFP A AP + I+ IY ++V++ Q DIK+++ Sbjct: 241 AILLGGILAKLGTYGLLRFGFGLFPQAWNVVAPTLAIWGAISAIYGAVVAISQKDIKRMV 300 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI HMGY+ + SG K + GA+ QM SHGL+ + LF VG+I ++ TR++ Sbjct: 301 AYSSIGHMGYILLAAASGTKLALVGAVAQMFSHGLILAILFHLVGIIEAKVGTRELDKLN 360 Query: 364 GL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN--SNTVAVLASFGVV 418 GL + +P + ++++ MA+ G+PG +GFI EF+V F + T+ +AS G Sbjct: 361 GLMSPIRGLPIVSALLVLGGMASAGIPGLTGFIAEFIVFQGSFSSFPIPTLLCVASSG-- 418 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+A+Y + L + FG + + E+ +A L +F G+ P Sbjct: 419 LTAVYFVILLNRTCFG-KLNNDLAYYPKVVWAEKIPALVLAGLIIFLGVQP 468 >gi|154362200|ref|YP_001294408.2| NADH dehydrogenase subunit 4 [Dioscorea elephantipes] Length = 500 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 160/496 (32%), Positives = 266/496 (53%), Gaps = 15/496 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P+L+I+ LP I F + G ++ + ++ + +F + F Q Sbjct: 5 PWLTIIVVLPIFAASSIFFLPHKGNKVFRWYTTCICLTELLLTTYVFCYH-FQLDDQLIQ 63 Query: 64 MIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 + E I+ F + LG+DG+SI ++LT F+T L++W + N R + + LV+ Sbjct: 64 LEEDLKCINIFDFHWRLGIDGLSIGPILLTGFITTLATLAAWP-VTRNSRLFYLLMLVMY 122 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 S IG F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GS+F+L + Sbjct: 123 SGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSVFLLIGV 182 Query: 183 VVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + M +D ++ +P +++ + F ++A+K P+ P HTWLP+ H +A Sbjct: 183 LGMGLYGSNEPTLDFERLANQSYPVALEIIFYFGFLIAYAVKSPIIPLHTWLPDTHGEAH 242 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++K Sbjct: 243 YSTCMLLAGILLKMGAYGLIRINMELLPHAHSLFSPWLVIVGTIQIIYAASTSFGQRNLK 302 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K IA SS++HMG++ IGI S +G+ GA+ Q+LSHG + +ALFF G DR+ + Sbjct: 303 KRIACSSVSHMGFIIIGIGSITDTGLNGAILQILSHGFIGAALFFLSGTSCDRIRFVYLD 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVLA 413 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 363 EMGGISLPMPKIFTMFSSFSMASLALPGMSGFVAELVVFLGIITSPKYLLMPKILITFVM 422 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQ--LKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G K V D RE + I + + GIYP Sbjct: 423 AIGMILTPIYLLSMSRQMFYGY-KLFNVPNSFFVDSGPRELFVSICIFLPVIGIGIYPDC 481 Query: 472 IRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 482 VFSLSVDKIEGILSNY 497 >gi|255961431|ref|YP_003097626.1| NADH-plastoquinone oxidoreductase subunit 4 [Dendrocalamus latiflorus] gi|255099166|gb|ACT99968.1| NADH-plastoquinone oxidoreductase subunit 4 [Dendrocalamus latiflorus] Length = 500 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 162/500 (32%), Positives = 268/500 (53%), Gaps = 17/500 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ ++ I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHRGNKIVRWYTIS--ICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDSKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPRLDLERLINRSYPATLEILFYLGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+ +Y L + R++ +G K V D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGY-KLFHVPNANFVDSGPRELFLLICIFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 481 FVLSLSVDRVEALLSNYYPK 500 >gi|89953625|ref|YP_525473.1| NADH dehydrogenase subunit 4 [Siphonops annulatus] gi|62002043|gb|AAX58670.1| NADH dehydrogenase subunit 4 [Siphonops annulatus] Length = 458 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 137/361 (37%), Positives = 207/361 (57%), Gaps = 9/361 (2%) Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIG 127 F + + +D +S L++LT +LTP I++S S Q R Y+ F++L+ ++ Sbjct: 49 QEFTNKWMTMDQLSAPLMILTCWLTPLMIVASQNHMLNSAQNQQRMYISTFIMLQISLLA 108 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 AF S ++++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++V Sbjct: 109 AFSSTELIMFYIMFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLMGSLPLLVALLVTH 168 Query: 187 WEKKTSSIIDL--YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + S+I++ + +F + Q W WIA +F +K+P++ H WLP AHV+AP AGS Sbjct: 169 NSLGSLSMINMQFFQHMEFTQTNQIW-WIACLTAFMVKMPLYGLHLWLPKAHVEAPIAGS 227 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L P Y P + LSL II S + M QTD+K LIA Sbjct: 228 MILAAVLLKLGGYGIIRISIILTPFTKDYIYPFLV-LSLWGIIMTSSICMRQTDLKSLIA 286 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + G GA+ M++HGL SSALF Y+R H R + Sbjct: 287 YSSVSHMALVIAATLTQTPWGFTGAVVLMIAHGLTSSALFCLANTNYERTHNRTMLLARS 346 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A+ ++ + NM LP + +GE +I ++F SN +L GV+++ALYS Sbjct: 347 LQTILPLMAMWWLLTNLMNMALPPSPNLMGEITIITALFNWSNMTIILTGTGVIITALYS 406 Query: 425 L 425 L Sbjct: 407 L 407 >gi|77164008|ref|YP_342533.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nitrosococcus oceani ATCC 19707] gi|254435927|ref|ZP_05049434.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Nitrosococcus oceani AFC27] gi|76882322|gb|ABA57003.1| NADH dehydrogenase subunit M [Nitrosococcus oceani ATCC 19707] gi|207089038|gb|EDZ66310.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Nitrosococcus oceani AFC27] Length = 491 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 147/410 (35%), Positives = 233/410 (56%), Gaps = 22/410 (5%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFF--GVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS+ FLP + V+L R F VAL + + F +L + + FD GR Q Sbjct: 2 LSLTIFLPLITALVVLILPR----SRPFLIRWVALAGAVLTFAAALGLLAGFDTGRPGLQ 57 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 WI +Y +GV+G S+ L++LT +L ++ ++ + + FL++ Sbjct: 58 WRTRLPWIPPVNAAYDVGVNGFSLALILLTAWLLVTVMVYVLRN-DNRPKGHAALFLLMA 116 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + ++G F + D+LLFY+FFE L+PM+ IIG+WG R YAA KFFLYT S+ ML + Sbjct: 117 TGLLGVFAAQDLLLFYLFFEVGLVPMYFIIGIWGHDNRRYAAMKFFLYTRAASLAMLLSF 176 Query: 183 VVMCW--EKKT---SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + + E T +II+ +++ W+ + F +K+P P H WLP+AHV Sbjct: 177 LALYLLMEPHTFSLPAIIEAQPLAQ-AGGAGGWVMLGMLIGFGVKLPTVPLHNWLPDAHV 235 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +APT GSV LAGI LKMG YG + +LP+ P +A ++ L+L++++Y SL ++ Q Sbjct: 236 EAPTEGSVMLAGIQLKMGAYGLLAIMLPIMPQVVFDYAWLLLALALVSLVYGSLAALAQQ 295 Query: 298 DIKKLIAYSSIAHMGYV-------TIGIFSGMKS-GVEGAMFQMLSHGLVSSALFFCVGV 349 D+K+LIAY+SI HMGY+ + +G + + G ++Q++SHGL++ +FF VG+ Sbjct: 296 DLKRLIAYTSINHMGYIMLAGALAVLAPTAGTQELALNGGIYQIISHGLLTGGMFFAVGM 355 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 I D+ TR++ GL ++++ V ++GLPG SGFIGEF V+ Sbjct: 356 IQDQTGTREMGRLRGLSRQASAFSLLTGVLVFGSLGLPGLSGFIGEFQVL 405 >gi|157415783|ref|YP_001483039.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni 81116] gi|157386747|gb|ABV53062.1| NADH dehydrogenase I chain M [Campylobacter jejuni subsp. jejuni 81116] gi|315931247|gb|EFV10217.1| NADH dehydrogenase I chain M [Campylobacter jejuni subsp. jejuni 327] Length = 495 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 166/500 (33%), Positives = 279/500 (55%), Gaps = 52/500 (10%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALG--ISTINF-IFSLFVWSVFDKGRSSF 62 L+ + F P + FV+L L G F V + I +N IF+ F+ V SF Sbjct: 2 LNYLIFFPLISAFVVLL---LNRGGIKVFSVVVSFMILALNLDIFADFLQGVSFDYNLSF 58 Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 ++++++ S+H+GVD I+++L++L++ + S+ ++ + + LE Sbjct: 59 KILKFF-------SFHVGVDSIALILMLLSSLMI----FLSFLFLKLEQKALVSCIFFLE 107 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 ++G F + D LLFY+F+E SL+P+ I+GV+G R A KFF+Y F GSI ML A+ Sbjct: 108 FAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFR--AGVKFFIYAFAGSILMLIAL 165 Query: 183 V----------------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMF 226 + + W+ S++ F+ Q ++ AFF +FAIK P+F Sbjct: 166 IYQAYLNYQLLNIFTFDLEIWKNNASAV---------NFTEQLLLFGAFFIAFAIKAPLF 216 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P HTW P +V +P SV L ++ KM +G + F LPLFP AS YF P+I L +++I Sbjct: 217 PLHTWAPKVYVNSPVLVSVML--VVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSI 274 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 +Y +L++ +IK+LIAYSSI+H+G + +GIFS G+ GA+F M +HG+V+ ALF Sbjct: 275 VYNALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM 334 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 V ++Y R HT DI Y L P +++ M+ +A++ LP T F+GEFL+++ + + + Sbjct: 335 VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAKIN 394 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFG 466 A+LA ++L A+Y ++RK+ F +K +++ SLR R +V + ++ + FG Sbjct: 395 LFYALLAGLVIILGAIYMFAVFRKIFF----MQKQSFIENFSLRLREIVALVCIIVMIFG 450 Query: 467 IYPVPIRDTFSVPLSSIIEN 486 + +P + P+ ++N Sbjct: 451 LGLMP--NILLKPIQKDVDN 468 >gi|48478731|ref|YP_024338.1| NADH dehydrogenase subunit 4 [Saccharum hybrid cultivar SP-80-3280] gi|126022808|ref|YP_054695.2| NADH dehydrogenase subunit 4 [Saccharum officinarum] gi|68052584|sp|Q6ENP7|NU4C_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|48478633|gb|AAT44653.1| NADH dehydrogenase subunit 4 [Saccharum hybrid cultivar SP80-3280] Length = 500 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 157/478 (32%), Positives = 259/478 (54%), Gaps = 15/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ +A I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHKGNKIVRWYTIA--ICLLEFLIMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N + + L + Sbjct: 63 QLKEDSKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-VTRNSQLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPGLDLERLINQSYPTTLEILLYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRVNMELLPHAHYLFSPWLVIIGAVQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFMLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +Y L + R++ +G + D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFHVPNKNFVDSGPRELFLLICIFLPVIGIGIYP 479 >gi|302553486|ref|ZP_07305828.1| NADH dehydrogenase subunit I M [Streptomyces viridochromogenes DSM 40736] gi|302471104|gb|EFL34197.1| NADH dehydrogenase subunit I M [Streptomyces viridochromogenes DSM 40736] Length = 524 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 161/440 (36%), Positives = 242/440 (55%), Gaps = 26/440 (5%) Query: 55 FDKGR-SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQEN 110 FD + S Q WI HLG+DGIS+ L+VLT LT C L S+ Sbjct: 66 FDHDQPSKMQASTDISWIPALDVRIHLGIDGISLPLLVLTALLTFLCALYSYFKMPAGPT 125 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + ++ LVLES + F LD+LLF++ FE LIPM+ +I WGG +R AA++F LY Sbjct: 126 PKAFVALLLVLESGTLATFAVLDLLLFFLAFETVLIPMYFLIARWGGEDRSRAAWRFILY 185 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS+ ML ++++ + T ++ L + S+Q ++ A+K PM+P Sbjct: 186 TLLGSVVMLLGLLLIGIKAGTFDMVALATDNGRSLTTSVQVIAVLSIGIGLAVKTPMWPL 245 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H+WLP+AH APT GSV LAG++LKMG YG +R +LP+ P + FAP + L+++ IIY Sbjct: 246 HSWLPDAHTAAPTVGSVLLAGVLLKMGTYGFVRIVLPIAPDGFRIFAPYLAALAVVGIIY 305 Query: 289 ASLVSM------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 SL + + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ Sbjct: 306 GSLACLALAKQGAKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGL 365 Query: 343 LFFCVGVIYDRLHTRDIFAY-----GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 LFF VG + DR + D+ L PR ++ +A++GLPG +GF GE L Sbjct: 366 LFFLVGALKDRTGSTDLDTLAEETGAALYGKAPRLGGLLAFAAVASLGLPGLAGFWGEML 425 Query: 398 VIMSVFQNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 + FQ + T + +FG +L+A Y L + R+V G + + +L D+ Sbjct: 426 ALFGAFQPAAGLSRPAFLTFMAIGAFGTLLTAAYLLIVVRRVCMG-ALPQDAPKLPDVRS 484 Query: 450 RERCMVYPIAVLTVFFGIYP 469 E P+ LTV G++P Sbjct: 485 YEFAAWTPLVALTVVAGLWP 504 >gi|49659578|dbj|BAD27359.1| NADH dehydrogenase ND4 subunit [Saccharum hybrid cultivar NCo 310] Length = 515 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 157/478 (32%), Positives = 259/478 (54%), Gaps = 15/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ +A I + F+ + + F Sbjct: 20 PWLTILVVLPIFAGSLIFFLPHKGNKIVRWYTIA--ICLLEFLIMTYAFCYHFQLEDPLI 77 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N + + L + Sbjct: 78 QLKEDSKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-VTRNSQLFYFLMLAM 136 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 137 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 196 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 197 VLGMGLYGSNEPGLDLERLINQSYPTTLEILLYFGFLIAYAVKLPIIPLHTWLPDTHGEA 256 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 257 HYSTCMLLAGILLKMGAYGLIRVNMELLPHAHYLFSPWLVIIGAVQIIYAASTSLGQRNF 316 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 317 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 376 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 377 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFMLMPKMLITFV 436 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +Y L + R++ +G + D RE ++ I + + GIYP Sbjct: 437 MAIGMILTPIYLLSMLRQMFYGYKLFHVPNKNFVDSGPRELFLLICIFLPVIGIGIYP 494 >gi|57168328|ref|ZP_00367462.1| NADH-ubiquinone oxidoreductase, NQO13 subunit (NQO13) [Campylobacter coli RM2228] gi|305432363|ref|ZP_07401525.1| NADH-quinone oxidoreductase subunit M [Campylobacter coli JV20] gi|57020136|gb|EAL56810.1| NADH-ubiquinone oxidoreductase, NQO13 subunit (NQO13) [Campylobacter coli RM2228] gi|304444402|gb|EFM37053.1| NADH-quinone oxidoreductase subunit M [Campylobacter coli JV20] Length = 496 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 155/436 (35%), Positives = 251/436 (57%), Gaps = 25/436 (5%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLD 133 F SYH+G D I+++L++L++ + L + I++ I FL E ++G F SLD Sbjct: 63 FMSYHIGADSIALILMLLSSLMIFLSFL--FLKIEQKAMVSCIFFL--EFAIMGLFSSLD 118 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 LLFY+F+E SL+P+ I+GV+G R A KFF+Y F GSI ML A++ + T Sbjct: 119 GLLFYVFWEFSLLPLLYIMGVYGKDYR--AGIKFFIYAFAGSILMLLALIYQAY--ATYK 174 Query: 194 IIDLYAM---------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +++++ S F+ Q ++ AFF +FAIK P+FPFHTW P + +P S Sbjct: 175 LLNIFTFDIEIWKNNASAMSFNEQILLFGAFFIAFAIKAPLFPFHTWAPKVYANSPILVS 234 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + L + KM +G +RF LPLFP AS YF P++ L +++I+Y +L++ +++K+LIA Sbjct: 235 MML--VAFKMAPFGFLRFCLPLFPDASVYFMPLVVALCIVSIVYNALIAYRASNLKELIA 292 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSSI+H+G + +GIFS G+ GA+F M +HG+V+ ALF ++Y + T +I Y Sbjct: 293 YSSISHLGVMILGIFSFNALGLSGAVFYMFAHGIVTGALFLMAELLYKKYGTLEISYYHS 352 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L + P + + + +A++ LP T F+GEFL+++ V + + A+LA ++L A+Y Sbjct: 353 LANKAPLFTIFFTLILLASISLPLTISFVGEFLILLGVAKLNLLYALLAGLVIILGAIYM 412 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSL--RERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 L ++RK+ F +K QL+ SL RE + PI VL + GI P D + Sbjct: 413 LHVFRKMFF----MQKESQLETCSLHAREILSLIPIVVLIFYLGIAPKIFLDPLNKDADF 468 Query: 483 IIENYTLKTGYSDSVK 498 I+E + +++ Sbjct: 469 IVEKMKERAIDDQTIR 484 >gi|253729604|ref|YP_003029789.1| NdhD [Bambusa oldhamii] gi|246367114|gb|ACS94725.1| NdhD [Bambusa oldhamii] Length = 500 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 162/500 (32%), Positives = 268/500 (53%), Gaps = 17/500 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ ++ I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHRGNKIVRWYTIS--ICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDSKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPRLDLERLINRSYPATLEILFYLGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+ +Y L + R++ +G K V D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGY-KLFHVPNANFVDSGPRELFLLICIFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 481 FVLSLSVDRVEALLSNYYPK 500 >gi|27904657|ref|NP_777783.1| NADH dehydrogenase subunit 4 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372468|sp|Q89AT5|NUOM_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit M; AltName: Full=NADH dehydrogenase I subunit M; AltName: Full=NDH-1 subunit M gi|27904054|gb|AAO26888.1| NADH dehydrogenase subunit 4 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 508 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 146/431 (33%), Positives = 247/431 (57%), Gaps = 18/431 (4%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WI+ F S+HL VD +SIL++ LT+ L + SWK +Q+N + L +IG Sbjct: 71 WIEKFGISFHLAVDRLSILMLNLTSILGLVSVFCSWKKVQKNIGLFYFGLLWTLGSIIGI 130 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSER--------IYAAYKFFLYTFFGSIFMLF 180 F+S+D+ LF+ F+E S++P + ++ +WG + I++A KFF+Y+ + +L Sbjct: 131 FISVDLFLFFCFWELSVLPTYFLMIMWGYKDNDRKFYYNNIFSANKFFIYSQISGLVLLL 190 Query: 181 AIVVMCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 + +V+ + I D+ + ++ + + FF +FAIKIP+ PFH+WLP+ Sbjct: 191 STLVLVYTHYIYDHILTFDYDVLKHTSMNIVLESCIMLGFFLAFAIKIPIVPFHSWLPDF 250 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +P G V ++GI+LK Y +RF +PLFP +++ F+ +I F +I I Y ++VS+ Sbjct: 251 HCYSPVIGVVDISGILLKTSIYALMRFNIPLFPHSTEIFSSIIMFFGIITIFYGAIVSLF 310 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q +IK+ IAY SI+HMG++ I I+S + +GA+ Q++S+ L ++ALF G ++ + Sbjct: 311 QNNIKRFIAYVSISHMGFILIAIYSINQVAYQGAIIQLISYSLSTAALFLLSGHVFKSIS 370 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 T DI GGL + +++F++ N+G+PGT F+GEF++ M F + + +L+ F Sbjct: 371 TFDIDKMGGLWSKLRWIPGFLLIFSIINLGVPGTGNFVGEFMIFMGCFNSHLMIVILSIF 430 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC---MVYPIAVLTVFFGIYPVPI 472 ++L AL SL +K+ FG + L DL++ C + + VL + G+YP I Sbjct: 431 SLILLALCSLMFVQKICFGPIN-NRYDFLCDLNVMTICDFLIFVFLLVLILIIGLYPNII 489 Query: 473 RDTFSVPLSSI 483 D PL SI Sbjct: 490 IDVSYSPLCSI 500 >gi|254422122|ref|ZP_05035840.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Synechococcus sp. PCC 7335] gi|196189611|gb|EDX84575.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Synechococcus sp. PCC 7335] Length = 524 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 159/473 (33%), Positives = 259/473 (54%), Gaps = 16/473 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ +LP LG ++ F + + AL +S + ++++ +++ FD +SFQM Sbjct: 2 LSLLIWLPILGALLLAFLP-VKLSATNARNAALAVSGASLLWTVVLFTRFDLSTASFQMR 60 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E+ W+ Y L +DG+S++++ L + LT I SS +I E R + L++ Sbjct: 61 EFIVWLPLLGLDYDLALDGLSLMMIALNSLLTWIAICSSSTTI-ERPRFFYSLMLLVSGG 119 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V GAFL+ ++LLF+ FE L+P++ +I VWGG ++ YAA KF LYT F+ + Sbjct: 120 VAGAFLAQNLLLFFFLFEIELVPLYFLISVWGGEKKEYAATKFLLYTALAGAFIFAGFIG 179 Query: 185 MCWEKKTSSIIDLYAM-SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 W T A+ S+ P Q + F IKIP+ PFHTWLP+ +V A Sbjct: 180 TVWLGGTLDFSYEQALQSEIPLPAQIVLLGILLVGFGIKIPLIPFHTWLPDTYVSASPPV 239 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 ++ L G++ K+G YG RF L LFP A P + + +++Y ++ ++ Q DIK+++ Sbjct: 240 AIMLGGVLAKLGTYGIFRFGLGLFPEAWSALGPFLAVWAAASVLYGAVTAIAQKDIKRMV 299 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI HMGYV +G + + V GA+ QM+SHGL+ + LF VGV+ ++ TR + Sbjct: 300 AYSSIGHMGYVMLGGAAFTELSVVGAISQMVSHGLILALLFHLVGVVETKVGTRQLDQLN 359 Query: 364 GLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF----G 416 GL++ +P + ++++ MA+ G+PG GFI EFL VFQ S +V +A+ G Sbjct: 360 GLLNPLRGLPLISALLVLSGMASAGIPGLVGFITEFL----VFQGSYSVYPVATLFCVVG 415 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+A+Y + L + FG E K ++ ER + +A + + G+ P Sbjct: 416 TGLTAVYFVILINRTCFGRLDNETAYYSK-VTNGERVPAFVLAAIVLALGLQP 467 >gi|255037958|ref|YP_003088579.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dyadobacter fermentans DSM 18053] gi|254950714|gb|ACT95414.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dyadobacter fermentans DSM 18053] Length = 555 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 122/259 (47%), Positives = 170/259 (65%), Gaps = 5/259 (1%) Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 F FA+K+P+ P HTWLP+AHV+APT SV LAGI+LK+GGYG IR + FP + Y A Sbjct: 278 FIGFAVKLPVVPVHTWLPDAHVEAPTPISVVLAGILLKIGGYGFIRIVDGFFPAEALYSA 337 Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLS 335 + L +I+I+Y ++ Q D+KK+IAYSS++HMG+V +GI + G GA++QM+S Sbjct: 338 IPLAVLGMISIVYGGFNALGQNDLKKMIAYSSVSHMGFVLLGIAAFTPEGFNGAIYQMVS 397 Query: 336 HGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGE 395 HG++S+ LF GVIYDR H R I Y GLV MPRY V+ + A++GLPG SGF+GE Sbjct: 398 HGILSAMLFLLTGVIYDRTHDRRIDHYRGLVGVMPRYTVLTGIAFFASLGLPGFSGFVGE 457 Query: 396 FLVIMSVFQNSNT---VAVLASFGVVLSALYSLWLYRKVVFGV--SKCEKVQQLKDLSLR 450 +M FQ+ + L++ G+VL+A Y LW Y+++ FG K Q L DL+ R Sbjct: 458 LFTLMGAFQSDALPVWIPALSTLGIVLAAGYFLWTYQRMFFGSFWYKNATTQVLNDLTRR 517 Query: 451 ERCMVYPIAVLTVFFGIYP 469 E M+ P+A+LT+ GI P Sbjct: 518 ETFMLVPLAILTILVGILP 536 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/137 (40%), Positives = 77/137 (56%), Gaps = 9/137 (6%) Query: 55 FDKGRSSFQMIEYYHWIDY--------FCSYHLGVDGISILLVVLTTFLTPFCILSSWKS 106 FD Q+ E WI Y L VDGIS LV+L + ++SSW + Sbjct: 53 FDIQNPGQQLSEVRDWITLPIGSLGVVSIDYALAVDGISFPLVLLAVVVLLVGVVSSW-N 111 Query: 107 IQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYK 166 + R Y +L+L V+G FL+ D+ LFY+FFE L+PM+ +IG+WGG R YAA K Sbjct: 112 VNHKSRAYFGLYLLLSGSVMGCFLAQDLFLFYLFFEFMLLPMYFLIGLWGGPRREYAALK 171 Query: 167 FFLYTFFGSIFMLFAIV 183 FF+YTF GS+ +L ++ Sbjct: 172 FFIYTFLGSLLILIVMI 188 >gi|290790818|gb|ADD63075.1| NADH-plastoquinone oxidoreductase subunit 4 [Potamophila parviflora] Length = 500 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 160/499 (32%), Positives = 264/499 (52%), Gaps = 15/499 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ + I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHRGNKIVRWY--TMSICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDSKWIDVFDFHWRLGIDGLSLGSILLTGFMTTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ + F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGASIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFHVPNENFVDSGPRELFLLICIFLPVIGIGIYPDF 481 Query: 472 IRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 482 VLSLSVDRVEALLSNYYPK 500 >gi|290790750|gb|ADD63008.1| NADH-plastoquinone oxidoreductase subunit 4 [Oryza australiensis] Length = 500 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 157/478 (32%), Positives = 257/478 (53%), Gaps = 15/478 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ + I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHRGNKIVRWY--TMSICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDSKWIDVFDFHWRLGIDGLSLGSILLTGFMTTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ + F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPRLDLERLINQSYPATLEILFYFGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGVSIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + G++L+ +Y L + R++ +G + D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFHVPNKNFVDSGPRELFLLICIFLPVIGIGIYP 479 >gi|284039755|ref|YP_003389685.1| proton-translocating NADH-quinone oxidoreductase, chain M [Spirosoma linguale DSM 74] gi|283819048|gb|ADB40886.1| proton-translocating NADH-quinone oxidoreductase, chain M [Spirosoma linguale DSM 74] Length = 559 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 115/266 (43%), Positives = 173/266 (65%), Gaps = 10/266 (3%) Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 A F FAIK+P+ P HTWLP+AHV+APT SV LAG++LK+GGYG IR FP + Sbjct: 273 AIFIGFAIKLPIVPLHTWLPDAHVEAPTPVSVILAGVLLKIGGYGFIRIAWDFFPDGAAQ 332 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 +A V+ L +++I+Y L ++ Q D+KK+IAYSS++HMG+V +G+ S GV GA++QM Sbjct: 333 YAQVLAGLGVLSIVYGGLNALAQADLKKMIAYSSVSHMGFVLLGVASLTAEGVNGAIYQM 392 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 +SHG++S+ LF VGV+YDR H R I +Y GL+ MP+YA + + ++GLPG SGF+ Sbjct: 393 VSHGILSAMLFLIVGVVYDRTHDRRIESYRGLLQLMPQYATLTAIAFFGSLGLPGFSGFV 452 Query: 394 GEFLVIMSVFQNS---NTVAVLASFGVVLSALYSLWLYRKVVFG-------VSKCEKVQQ 443 GE +M FQ+ +A+ G++L+A Y LW ++++ FG S+ Sbjct: 453 GELFTLMGSFQSEWLPGWFTAVATLGILLAAAYFLWTFQRMFFGSPWVGAFASESSNEFV 512 Query: 444 LKDLSLRERCMVYPIAVLTVFFGIYP 469 + DL+LRER M+ P+ + + G++P Sbjct: 513 IADLTLRERLMLIPLGAMALVLGLFP 538 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ F+P +G V+ G F VAL ++ + + + W+ FDK + +Q + Sbjct: 3 LSLLIFIPLIGSLVVALLPERQTGL--FRWVALAVTLVELVLAGMAWAGFDKAEAGYQFL 60 Query: 66 EYYHWIDY--------FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA 117 + WI Y +GVDGIS+ LVVL+ + ++SSW+ + Y Sbjct: 61 QQVDWITLPLGNLGVVSIDYLVGVDGISLPLVVLSAVVMLIGVISSWRMTHRQ-KAYYSL 119 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 +L+L ++G F++LD LF++FFE L+PM+ +IG+WGG R YA+ KFFLYT Sbjct: 120 YLLLTGTIMGCFVALDFFLFFLFFEFMLLPMYFLIGLWGGPRREYASIKFFLYT 173 >gi|294674392|ref|YP_003575008.1| proton-translocating NADH-quinone oxidoreductase subunit M [Prevotella ruminicola 23] gi|294472706|gb|ADE82095.1| proton-translocating NADH-quinone oxidoreductase, M subunit [Prevotella ruminicola 23] Length = 506 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 145/432 (33%), Positives = 245/432 (56%), Gaps = 26/432 (6%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 +Y +GVDGIS+++++L++ + +SW+ ++ +EY + F +L + V G F+S D+ Sbjct: 76 AYSVGVDGISVVMLLLSSIIVFTGTFASWQ-LKPLTKEYFLWFTLLSTGVYGFFISTDLF 134 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW------EK 189 ++F+E +LIPM+++IGVWG + Y+A K L GS ++ ++ + + Sbjct: 135 TMFMFYEVALIPMYLLIGVWGSGRKEYSAMKLTLMLMGGSALLILGLLGIYYFNGIYSGN 194 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 T + + A P IQ + F F + +FPFHTW P+ H APTA S+ AG Sbjct: 195 YTFELTTIAANHCIPGHIQNIFFPFIFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAG 254 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 +++K+GGYGC R + L P A+Q + + L+ I+++Y +L + VQTD+K + AYSS++ Sbjct: 255 VLMKLGGYGCFRVAMYLLPEAAQDLSWIFLILTTISVVYGALSACVQTDLKYINAYSSVS 314 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 H G V + ++ V GA+ QMLSHGL+++ F +G+IY R HTRDI GL+ M Sbjct: 315 HCGLVLFALLMMSQTAVTGAVLQMLSHGLMTALFFALIGMIYGRTHTRDIRELAGLMKIM 374 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF------QNSNT-----VAVLASFGVV 418 P AV ++ +AN+GLPG SGFI E + + F + NT ++A +V Sbjct: 375 PFLAVGYVIAGLANLGLPGFSGFIAEMTIFVGSFGAHPLSGDPNTSFRMVATIIACMSIV 434 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER----CMVYPIAVLTVFFGIYPVPIRD 474 ++A+Y L + K+++G + + +L D + ER C+++ +A L G +P + D Sbjct: 435 VTAVYILRVVGKILYGEVENKHFLELTDATWDERVAVICLIFCVAGL----GSFPFWVSD 490 Query: 475 TFSVPLSSIIEN 486 S +I+E+ Sbjct: 491 MISPAAGTILES 502 >gi|288900917|ref|YP_003433765.1| Nad4p [Candida viswanathii] gi|162401904|gb|ABP03925.1| Nad4p [Candida viswanathii] Length = 363 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 126/341 (36%), Positives = 200/341 (58%), Gaps = 9/341 (2%) Query: 133 DMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI---VVMCWEK 189 DML FY++FEASL P+F++IG++G S R A+ +YT F S+FML AI V+ Sbjct: 4 DMLSFYVYFEASLAPLFILIGLYGASNRDKASDYILIYTLFSSLFMLLAIGTYEVLIGNT 63 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 SI L +S +Q ++I +K P+ P HTWLP H ++P AGS+ LAG Sbjct: 64 DYQSI-SLIVLST---DLQCILFICLTIGIMVKTPLVPVHTWLPVVHSESPLAGSMLLAG 119 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+ Y IR ++P A+ + P+ + + I IIY SL+++ Q+D+K ++AYSSI+ Sbjct: 120 VILKLAIYALIRLVIPSLSDATVLYTPIAYLICAITIIYTSLITLRQSDLKVIVAYSSIS 179 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHN 368 HM +GI S +G+ G++ ++HG VS ALF V G++YDR H R I+ Y GL+ Sbjct: 180 HMAVCILGILSNTLTGINGSLIMSIAHGFVSPALFIIVGGILYDRYHNRLIYYYQGLITY 239 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 MP ++ +++ + N+G P T FIGE L + S + +++ V+LSA Y L + Sbjct: 240 MPILSIYLLILSFCNIGTPLTVNFIGELLSLTGAINRSAILGAISALSVLLSAAYMLKVT 299 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++ GV + + D + RE ++ + + T+F+GIYP Sbjct: 300 NRLTGGV-RTPYIHLTSDCTYRENILMIILIIPTIFYGIYP 339 >gi|239997603|gb|ACS37114.1| NADH dehydrogenase subunit 4 [Hypogeophis rostratus] Length = 458 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 139/359 (38%), Positives = 208/359 (57%), Gaps = 9/359 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAF 129 F S L D +S L++LT +LTP I++S + + R Y+ F++L++ +I AF Sbjct: 51 FISKWLATDQLSAPLMILTCWLTPMMIIASQNHMTNLPINHQRMYITTFILLQTTLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +++LFYI FE +LIP VII WG +ER+ A F YT GS+ +L A++++ E Sbjct: 111 SSTELILFYIMFETTLIPTLVIITRWGNQTERLNAGTYFLFYTLLGSLPLLVALLLLQNE 170 Query: 189 KKTSSIIDL--YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + S++++ Y M+ + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 TGSLSMMNMQFYQMTTITKTNNIW-WAACLIAFMVKMPLYGLHLWLPKAHVEAPIAGSMI 229 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R + L P +Y P + LSL II S + M QTD+K LIAYS Sbjct: 230 LAAILLKLGGYGIMRISIMLTPFTKEYIYPFLI-LSLWGIIMTSSICMRQTDLKSLIAYS 288 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V G GAM M++HGL SS LF Y+R H R + GL Sbjct: 289 SVSHMALVISAALIQTPWGFTGAMILMIAHGLTSSMLFCLANTNYERTHNRTLLLTRGLQ 348 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A+ ++ + NM LP ++ +GE +I ++F SN +L GV+L+A+YSL Sbjct: 349 TVLPLMALWWLLSNLTNMALPPSTNLMGEITIISALFNWSNMTIMLTGMGVILTAMYSL 407 >gi|32567802|ref|NP_075041.2| NADH dehydrogenase subunit 4 [Candida albicans SC5314] gi|74623665|sp|Q9B8C8|NU4M_CANAL RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|32567814|gb|AAG59598.2|AF285261_11 NADH dehydrogenase subunit 4 [Candida albicans SC5314] Length = 464 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 139/391 (35%), Positives = 230/391 (58%), Gaps = 9/391 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFF 141 DGI+ + ++LT +L P I+++W +I+ Y L L +++ F+ DML FY++F Sbjct: 52 DGIADIFILLTAYLLPLSIIANWNNIRSLL--YFELILNLGVILLINFMCQDMLSFYVYF 109 Query: 142 EASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS 201 E SL P+F++IG++G + R AA +YT F S+FML AI +E + D A+S Sbjct: 110 EISLAPLFILIGLYGANNRDKAADYILIYTLFSSLFMLLAI--GTYEVLIGNT-DYQAVS 166 Query: 202 KFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 S +Q +++ +K P+ P HTWLP H ++P AGS+ LAG++LK+ Y Sbjct: 167 LVVLSTDLQCILFLCISAGIMVKTPLVPVHTWLPVVHSESPLAGSMLLAGVILKLAVYAI 226 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 IR ++P A+ + PV++ + I IIY S++++ QTD+K ++AYSSI+HM +GI Sbjct: 227 IRLIIPTLSDATVLYTPVVYVICAITIIYTSIITLRQTDLKVIVAYSSISHMAVCILGIL 286 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 S +G+ G++ L+HG VS ALF V G++YDR H R I+ Y GL+ MP A+ +++ Sbjct: 287 SNSLAGINGSLILSLAHGFVSPALFIIVGGILYDRYHHRLIYYYQGLLTYMPILAIYLLI 346 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 + +N+G P T FIGE L + S + +++F V+LSA Y L + ++ G+ + Sbjct: 347 LSFSNIGTPLTVNFIGELLSLTGAIGRSTILGCISAFSVLLSAAYMLKVTNRLTGGI-RT 405 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 D + RE ++ + + T+++G+YP Sbjct: 406 PYTALTSDCTYRESLLMIALIIPTLWYGLYP 436 >gi|239980097|ref|ZP_04702621.1| putative NADH dehydrogenase chain M [Streptomyces albus J1074] gi|291451951|ref|ZP_06591341.1| NADH dehydrogenase subunit I M [Streptomyces albus J1074] gi|291354900|gb|EFE81802.1| NADH dehydrogenase subunit I M [Streptomyces albus J1074] Length = 524 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 165/444 (37%), Positives = 239/444 (53%), Gaps = 34/444 (7%) Query: 55 FDKGRSS-FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQEN 110 FD R S Q WI HLGVDGIS+ L+VLT LT C L S+ + Sbjct: 66 FDHSRPSVMQASTDISWIPALDIRLHLGVDGISLPLLVLTALLTFLCALYSYFRPPTGAS 125 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 + ++ L+LE+ + F LD++LF++ FE LIPM+ +I WGG+ R AA KF +Y Sbjct: 126 PKAFVALLLLLETGTLATFAVLDLILFFLAFETVLIPMYFLIARWGGAAREQAAGKFIVY 185 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS+ ML ++++ + T ++ L A S ++Q IA A+K PM+P Sbjct: 186 TLLGSVIMLLGLLLIGLKAGTFDMVALAADGGSSLSVTVQLVAVIAVGLGLAVKSPMWPL 245 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H+WLP+AH APT GSV LAG++LKMG YG +R LLP P FAP + + + I+Y Sbjct: 246 HSWLPDAHTAAPTVGSVLLAGVLLKMGTYGFVRILLPATPDGLHAFAPYLGAFAAVGIVY 305 Query: 289 ASLV--SMVQT----DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 SLV S+V+ D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ Sbjct: 306 GSLVCLSLVREGGKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANVAHGLITGL 365 Query: 343 LFFCVGVIYDRLHTRDI---------FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 LFF VG + DR + I YG PR ++ +A++GLPG +GF Sbjct: 366 LFFLVGALKDRTGSTGIDALAGVAGAALYG----RAPRLGALLAFAAVASLGLPGLAGFW 421 Query: 394 GEFLVIMSVFQNSNTVAVLA--------SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 GE L + FQ + ++ A G +L+A Y L + R++ G E L Sbjct: 422 GEMLAMFGAFQPAAGLSRPAFLVYLGLAGLGTLLTAAYLLLVVRRICMGAVP-EGAPPLA 480 Query: 446 DLSLRERCMVYPIAVLTVFFGIYP 469 D+ E P+ LTV G++P Sbjct: 481 DVRGHEAATWTPLVALTVLAGVWP 504 >gi|290790885|gb|ADD63141.1| NADH-plastoquinone oxidoreductase subunit 4 [Microlaena stipoides] Length = 500 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 160/500 (32%), Positives = 268/500 (53%), Gaps = 17/500 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ P +I F + G ++ ++ I + F+ + + F Sbjct: 5 PWLTILVVFPIFAGSLIFFLPHRGNKIVRWYTIS--ICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDYKWIDVFDFHWRLGIDGLSLGSILLTGFMTTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ +++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPRLDLERLINQPYPATLEILLYLGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAVQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTTCDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 G + MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGXVSIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPV 470 + G++L+ ++ L + R++ +G K V D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIFLLSMLRQMFYGY-KLFHVPNANFVDSGPRELFLLICIFLPVIGIGIYPD 480 Query: 471 PIRDTFSVPLSSIIENYTLK 490 + + +++ NY K Sbjct: 481 FVLSLSVDRVEALLSNYYPK 500 >gi|315504991|ref|YP_004083878.1| proton-translocating NADH-quinone oxidoreductase, chain m [Micromonospora sp. L5] gi|315411610|gb|ADU09727.1| proton-translocating NADH-quinone oxidoreductase, chain M [Micromonospora sp. L5] Length = 496 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 163/503 (32%), Positives = 268/503 (53%), Gaps = 37/503 (7%) Query: 6 LSIVTFLPFLGVFVILFSSYLG--CGRRSFFGV-ALGISTINFIFSLFVWSVFDKGRSSF 62 LS++ FLP ++ LG R ++ V A+ ++ I ++ W Sbjct: 2 LSVIVFLPLFAAVALVALPRLGDTAARWTWIAVTAVDLALIAVVW----WRYHTPPTGEL 57 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA--FL 119 E WI SYH+GVDG+S+ LVV+T + C + ++ E R A FL Sbjct: 58 AFAERAAWIPGVNSSYHIGVDGLSLPLVVMTAVIFLACAV---YALHERHRPRGQAALFL 114 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 L+S+ +G F++ D++LF++FF+ S++ M+ +I WG R ++A KFFLYTF GS+ +L Sbjct: 115 FLQSVSLGLFVAADLVLFFVFFDLSIVGMYFVIAGWGHGNRAHSALKFFLYTFLGSLALL 174 Query: 180 FAIVVM--CWEKKTSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + + T + +L A P + + A A+K P PFHTWLP Sbjct: 175 VGFIGLYVAAAPHTFDMPELVATPPLQGRPVAGGLVL-AAILLGLAVKTPTVPFHTWLPP 233 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH AP GS LAG++LKMG YG +R +P+ P A + +A V+ + +++++Y +LV++ Sbjct: 234 AHTDAPAVGSAVLAGVLLKMGTYGFVRIAMPMLPQAWRAWAWVVVVVGVVSVLYGALVAL 293 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGI-FSGMKS---------GVEGAMFQMLSHGLVSSALF 344 Q+++K++IAY+S+ HMGY+ + + +G+ + V GA+ QM+SHGL+++ALF Sbjct: 294 AQSNVKRMIAYTSVNHMGYIVLAVGVAGLVAADTAQARGVAVVGAVTQMVSHGLITAALF 353 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 GV+ DR T D+ +GGL P +A + V A++GLP SGFI EF +F Sbjct: 354 LLAGVLRDRAGTYDMRDFGGLGAPAPTFAALFAVGAFASLGLPAFSGFIAEF----QIFT 409 Query: 405 NS---NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 S V +A G++++A L ++V G + + DL RE V P+ +L Sbjct: 410 GSVAAAPVTAVAVLGILITAALFLRALQRVFTGDTTGRSI-GFTDLRARELWSVGPLLLL 468 Query: 462 TVFFGIYPVPIRDTFSVPLSSII 484 ++ G+ P P+ D +++ Sbjct: 469 SLLIGVLPRPLLDVIEPAAHAVV 491 >gi|197107576|gb|ACH42368.1| NADH dehydrogenase subunit 4 [Desmarestia ligulata] Length = 223 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 120/224 (53%), Positives = 161/224 (71%), Gaps = 6/224 (2%) Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFF 168 + + Y+I+FL +E +++ F +LD+L FYIFFE LIPMF++IG+WG +R I AAY FF Sbjct: 2 SXKSYLISFLSMELVLLLVFTNLDLLFFYIFFETVLIPMFLVIGIWGSRQRKIRAAYMFF 61 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMF 226 LYT GS+FML +V + T+ D A+S FS Q W+W+AFF SFA K+PM Sbjct: 62 LYTLLGSLFMLLGVVYIYLFAGTT---DYEALSVVGFSSYDQKWLWLAFFASFASKVPML 118 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L L PLAS YF P++F LSL+ + Sbjct: 119 PVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLLPLASVYFTPLVFSLSLLGV 178 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G G+E A+ Sbjct: 179 VYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGIEAAV 222 >gi|310915122|emb|CBM41831.1| NADH dehydrogenase subunit 4 [Millerozyma farinosa] Length = 454 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 135/405 (33%), Positives = 230/405 (56%), Gaps = 11/405 (2%) Query: 68 YHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 Y W + Y DGI+ + ++LT +L P I+S+W +++ Y L +++ Sbjct: 40 YDWNEMDVYY--TTDGIADMTMLLTLYLLPISIMSNWNNMKSML--YFELVFNLGMILLM 95 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV--M 185 F+ DM FYI+FEASL P+FV++G++G + + AA +YT S+FML AI + + Sbjct: 96 NFMCQDMTSFYIYFEASLAPLFVMMGLYGAANKDKAADYILMYTLLSSLFMLLAIALYEV 155 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + L +S +Q +++ A+K P+ P HTWLP H ++P AGS+ Sbjct: 156 MLDNTDYQSTSLLVLS---LDLQCILFVGLSMGIAVKTPLAPVHTWLPVVHSESPLAGSM 212 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LAGIMLK+ Y IR ++P A+ + P ++ L ++ I+Y S+V++ QTD+K +IAY Sbjct: 213 LLAGIMLKLAVYAIIRLMMPTLSDATVLYTPFVYVLCVMTIMYTSIVTLRQTDLKVIIAY 272 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGG 364 SS++HM +GI S +G+ G++ ++HG VS LF V G++YDR H R + + G Sbjct: 273 SSMSHMALAMLGIMSNTLTGMTGSLMLSIAHGFVSPGLFIIVGGMLYDRYHNRLVHYFQG 332 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L+ MP ++ +++ + N+G P + F+GE L + + + +A+F V+LSA Y Sbjct: 333 LISYMPMLSIYLIILSFCNIGTPLSINFVGELLSMTGSINRAPILGAMAAFAVLLSACYQ 392 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + L ++ G+ K ++ D + RE ++ + V T+FFG++P Sbjct: 393 MKLTNRLTGGI-KTPYIKLTSDCTYRESVLLISLIVPTIFFGMFP 436 >gi|225166400|ref|ZP_03728066.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] gi|224799360|gb|EEG17921.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] Length = 454 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 206/362 (56%), Gaps = 21/362 (5%) Query: 63 QMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q + WI + YHL DGIS+ LVVLT IL SW +I + E+ +L L Sbjct: 58 QTLVNLPWIAELGIQYHLAADGISLTLVVLTAIAALAGILFSW-NITDRTGEFFALYLAL 116 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 V G FLS D +F++F+E +++P + ++ WG + R Y A K LY+F GS ++ Sbjct: 117 IGGVYGVFLSADAFVFFVFYEIAIVPKYFLVAKWGSTNREYGAMKLVLYSFAGSALVMAG 176 Query: 182 IVVMCWEKKTSSIID-------------LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 ++ W T++ + A + F + Q M+ F FA+ MFPF Sbjct: 177 LL---WAHATAAALPPPHAVQTFSLTQLAEAATHFSHAQQLGMFALVFTGFAVLAGMFPF 233 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 HTW P HV APTA S+ LAG+++K+G YGC+R +PLF FAP I +L++I I+Y Sbjct: 234 HTWAPTGHVAAPTAASMLLAGVVMKLGAYGCLRVAIPLFVEGYHTFAPFIGWLAVIGIVY 293 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 A ++++Q D K +I YSS++HMG+V +G+ + + + GA+ QM SHG+++ LF VG Sbjct: 294 AGFIALIQDDFKFVIGYSSVSHMGFVLLGLAAANERALSGAVLQMFSHGIIAGLLFAVVG 353 Query: 349 -VIYDRLHTRDIFAYGGL-VHN-MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 ++Y+R HTR++ L +H +P A ++ +A+MGLPG SGF E +++ +Q Sbjct: 354 RMVYERTHTRNLADLRALPLHRLLPFAATTFVIAGLASMGLPGFSGFPAELSILVGAWQT 413 Query: 406 SN 407 S Sbjct: 414 SR 415 >gi|170665308|gb|ACB29194.1| NADH dehydrogenase subunit D [Pluchea carolinensis] Length = 500 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 155/497 (31%), Positives = 262/497 (52%), Gaps = 17/497 (3%) Query: 4 PFLSIVTFLP-FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSS 61 P+L+I+ LP F G F+ G R + I + + + + + F Sbjct: 5 PWLTIIVVLPIFAGSFIFFLPH---KGNRVIRWYTICICMLELLLTTYAFCYHFQLDDPL 61 Query: 62 FQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 Q++E Y WI++F + LG+DG+SI ++LT F+T L++W +++ R + L Sbjct: 62 IQLVEDYKWINFFDFRWKLGIDGLSIGPILLTGFITTLATLAAWPVTRDS-RLFHFLMLA 120 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 + S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 121 MYSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLM 180 Query: 181 AI--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + V + + + + +P +++ +I FF +FA+K P Sbjct: 181 GVLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKSPXXXXXXXXXXXXXX 240 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q + Sbjct: 241 XHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLIIVGTIQIIYAASTSPGQRN 300 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ Sbjct: 301 LKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVY 360 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAV 411 + GG+ MP+ + + F+MA++ LPG SGF+ E +V + + + + Sbjct: 361 LDEMGGVAIPMPKIFTMFISFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITF 420 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPV 470 + + G++L+ +Y L + R++ +G + D RE + I + + G+YP Sbjct: 421 VMAIGMILTPIYLLSMSRQMFYGYKLFNTPNSYVFDSGPRELFVSISIFLPVIGIGMYPD 480 Query: 471 PIRDTFSVPLSSIIENY 487 + + I+ NY Sbjct: 481 FVLSLSVDKVEGILSNY 497 >gi|116009017|gb|ABJ52177.1| NADH dehydrogenase subunit 4 [Phyllostachys edulis] Length = 495 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 149/442 (33%), Positives = 246/442 (55%), Gaps = 14/442 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ ++ I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHRGNKIVRWYTIS--ICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 63 QLKEDSKWIDVFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H +A Sbjct: 182 VLGMGLYGSNEPRLDLERLINRSYPATLEILFYLGFLIAYAVKLPIIPLHTWLPDTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAMQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKILITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 422 MAIGMILTPIYLLSMLRQMFYG 443 >gi|332887080|dbj|BAK23182.1| NADH dehydrogenase subunit 4 [Paedocypris sp. Banka Is.] Length = 460 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 141/385 (36%), Positives = 218/385 (56%), Gaps = 11/385 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K + + R Y+ + L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQKHTNQEPITHQRLYITLLISLQMFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++VM E T S Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLVMQKETGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +I L + + + ++W W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LITLQYTTPLELYTWGHKFW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L P + + P I L+L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRITMMLDPFSKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL P Sbjct: 295 MGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTSYERTHSRTMILARGLQMIFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 V + +AN+ LP +GE +IM++F S T +L G +++A YSL+++ Sbjct: 355 LTTVWWFIMNLANLALPPLPNLMGEIKIIMALFNWSPTTILLTGLGTLITAGYSLYMFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G + + + L+ RE ++ Sbjct: 415 TQRGPTP-KHMNNLQPYHTREHLLI 438 >gi|225874139|ref|YP_002755598.1| NADH dehydrogenase I, M subunit [Acidobacterium capsulatum ATCC 51196] gi|225791359|gb|ACO31449.1| NADH dehydrogenase I, M subunit [Acidobacterium capsulatum ATCC 51196] Length = 525 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 177/519 (34%), Positives = 274/519 (52%), Gaps = 47/519 (9%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRSSF 62 P L+ + FLG +L + R F VAL S + F+ +L +V S Sbjct: 14 PQLAWTIYASFLGAAAVLLTPQ---SRPQFTRWVALLTSLVGFVLTLG--AVLQYQPGSL 68 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 ++ WI Y L DGIS+ L++LT IL SW +I+ RE+ +LVL Sbjct: 69 LVVADSTWIPQLGIRYTLAADGISLTLLLLTGLAAMAGILFSW-NIEHRTREFFAFYLVL 127 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE------RIYAAYKFFLYTFFGS 175 V G FLS D+ L ++F+E ++IP + +I +WG + R YAA K LY+F GS Sbjct: 128 IGGVYGVFLSFDLFLLFVFYEIAIIPKYFLIAIWGSAPNGDTRPRQYAAMKLALYSFAGS 187 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF---FCSFAIKIPMFPFHTWL 232 +L I+ W S ++L ++ +PFS + MW AF F FA+ ++PFHTW Sbjct: 188 ALVLIGILA-AWAASGSQTLNLAVLAHYPFSQHFQMW-AFPLVFVGFAVLAGLWPFHTWA 245 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAP-------------VIF 279 P H APTA S+ LAG+++K+G YGC+R + LFPL AP V Sbjct: 246 PTGHAAAPTAASMLLAGVVMKLGAYGCLRVAMMLFPLG---LAPWGFHILGLGSWRDVFA 302 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 L+LI+I+Y + V++VQ D K +I YSS++HMG+V +G+ + + G++GA+ QM SHG++ Sbjct: 303 LLALISIVYGASVALVQRDFKFVIGYSSVSHMGFVLLGLMTLSQIGIDGAVLQMFSHGII 362 Query: 340 SSALFFCVG-VIYDRLHTRDIFAYGG--LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEF 396 + LF VG ++YDR HTRD+ A G L +P A+ + MA++GLPG SGFI E Sbjct: 363 AGLLFAVVGRMVYDRTHTRDLAALGPMHLSRALPFAAITFTLAAMASVGLPGFSGFIAEL 422 Query: 397 LVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV-----QQLKDLSLRE 451 VI+ V+++ + + G+++ ++ +V F ++ ++ L ++L E Sbjct: 423 QVILGVWRSMPWMVFAVALGILIGVAFTWRALTRVFFPAAQSDEPPAPIEHPLPPITLPE 482 Query: 452 RCMVYPIAVLTVFFGIYP----VPIRDTFSVPLSSIIEN 486 R + T+ G+YP I + PL S + N Sbjct: 483 RAGALLLLTATIIVGLYPHILMRLILPSLQSPLFSALRN 521 >gi|218176291|ref|YP_002364548.1| NADH-plastoquinone oxidoreductase subunit 4 [Festuca arundinacea] gi|215882375|gb|ACJ70805.1| NADH-plastoquinone oxidoreductase subunit 4 [Festuca arundinacea] Length = 501 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 151/421 (35%), Positives = 239/421 (56%), Gaps = 16/421 (3%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E Y WID F + LG+DG+S+ ++LT F+T L++W + N R + L + Sbjct: 64 QLKEDYKWIDIFDFHWRLGIDGLSLGSILLTGFITTLATLAAWP-VTRNSRLFYFLMLAM 122 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 123 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 182 Query: 182 IVVMCWEKKTSSII--DLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ++ M S+ + DL + +P +++ ++ F ++A+K+P+ P HTWLP+ H Sbjct: 183 VLGMGLYGYGSNELGLDLERLINQSYPATLEILLYFGFLIAYAVKLPIIPLHTWLPDTHG 242 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S+ Q Sbjct: 243 EAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHYLFSPWLVIIGAIQIIYAASTSLGQR 302 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 + KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ Sbjct: 303 NFKKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTASDRMRLV 362 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVA 410 + GG+ MP+ + F+MA++ LPG SGF+ E +V + + + Sbjct: 363 YLEELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFLLMPKMLIT 422 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK--DLSLRERCMVYPIAVLTVFFGIY 468 + + G++L+ +Y L + R++ +G K V D RE ++ I + + GIY Sbjct: 423 FVMAIGMILTPIYLLSMLRQMFYGY-KLFNVPNANFVDSGPRELFILICIFLPVIGIGIY 481 Query: 469 P 469 P Sbjct: 482 P 482 >gi|254432723|ref|ZP_05046426.1| NADH dehydrogenase i domain protein [Cyanobium sp. PCC 7001] gi|197627176|gb|EDY39735.1| NADH dehydrogenase i domain protein [Cyanobium sp. PCC 7001] Length = 503 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 148/436 (33%), Positives = 239/436 (54%), Gaps = 24/436 (5%) Query: 53 SVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 FD ++ Q+ E + W+ Y LGVDG+S+ LV++ LT ++ + + Sbjct: 53 QAFDPAQAGLQLQEAHGWVPGLGLDYRLGVDGLSLPLVLINGALTLVSVVCT-REFSRRP 111 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 R Y L++ V GAFL+ ++LLF++F+E LIP++++I +WGG+ R YAA KF ++T Sbjct: 112 RLYFALLLLISGAVNGAFLADNLLLFFLFYELELIPLWLLISIWGGTGRAYAATKFLIFT 171 Query: 172 FFGSIFMLFAIVVMC-WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 + +L A + + + + + Q + A F IK+P+ PFHT Sbjct: 172 AISGMLILGAFLGLALFTGSVDFSLTPVDSERLGMGAQLVLLAALLVGFGIKMPLVPFHT 231 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP+AH QA T SV LAG++LK+G YG +RF + LFP A AP + + +++++ S Sbjct: 232 WLPDAHTQASTPVSVLLAGVLLKLGTYGLLRFGMGLFPEAWARLAPALAVWAAVSVVFGS 291 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 L ++ Q D+K+++AYSS+ HMGY+ + + + G FQM+SHGL+S+ LF VG++ Sbjct: 292 LAAIAQQDMKRMVAYSSVGHMGYILLAAAAATPVSLLGTEFQMVSHGLISALLFLLVGIV 351 Query: 351 YDRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 Y + TRD+ GL++ +P +M+V MA+ G+PG +GFI EFL VF+ S Sbjct: 352 YRKTGTRDLTVLRGLLNPERGLPLTGSLMIVGVMASAGMPGMAGFISEFL----VFRGSI 407 Query: 408 TVAVLASF----GVVLSALYSLWLYRKVVFG----VSKCEKVQ------QLKDLSLRERC 453 T +A+ G L+A+Y L L + FG + +Q QL ++ RE Sbjct: 408 TAYPVATLVCLVGSGLTAVYFLLLVNRAFFGRLAVTPPSDPIQDGRLDIQLAAVNPRETV 467 Query: 454 MVYPIAVLTVFFGIYP 469 + + V G+ P Sbjct: 468 PAIALGIAVVGLGLLP 483 >gi|218248958|ref|YP_002374329.1| NAD(P)H-quinone oxidoreductase subunit M [Cyanothece sp. PCC 8801] gi|257062044|ref|YP_003139932.1| NAD(P)H-quinone oxidoreductase subunit M [Cyanothece sp. PCC 8802] gi|218169436|gb|ACK68173.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 8801] gi|256592210|gb|ACV03097.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 8802] Length = 523 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 153/472 (32%), Positives = 251/472 (53%), Gaps = 14/472 (2%) Query: 6 LSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV--FDKGRSSF 62 LS + +LP LG +I F + L + L + +F+ +W V FD S Sbjct: 2 LSFLLWLPILGAIIIGFFPAKLSSVQWKRLTTVLAV----VVFAATIWLVTQFDLSHSGL 57 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q EY+ W SY L +DG+S+ L+ L + LT I S +++ E R Y L++ Sbjct: 58 QFREYFPWAKPIGLSYSLAIDGLSLPLLALNSLLTIIAIYSIGENV-ERPRLYYALTLLI 116 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 + + GA ++ ++LLF IF+E LIP +++I +WGG +R YA+ KF LYT + +L Sbjct: 117 NAGITGALVAQNLLLFVIFYELELIPFYLMIAIWGGEKRGYASVKFLLYTALSGLLVLAG 176 Query: 182 IVVMCW-EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + T+ D + + Q + A F IKIP+ P HTWLP+A+ +A Sbjct: 177 FLGIGFLSGATNFDYDTISTQGLSLNTQLILLTALLIGFGIKIPLVPLHTWLPDAYTEAS 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 A ++ L GI+ K+G YG IRF L LFP A +P + + I+++Y +L ++ Q DIK Sbjct: 237 PAVAILLGGILAKLGTYGLIRFGLQLFPQAWHLISPGLAIIGTISVLYGALSAIAQKDIK 296 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 +++AYSSI HMGY+ + +G + + GA+ QM+SHGL+ + LF VG++ ++ TRD+ Sbjct: 297 RMVAYSSIGHMGYILVAAAAGTQLSILGAVAQMISHGLILALLFHLVGIVERKVGTRDLD 356 Query: 361 AYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 GL + +P + ++++ MA+ G+PG GF+ EF+V F + Sbjct: 357 VLNGLMNPIRGLPLTSALLVMAGMASAGIPGLVGFVAEFIVFQGSFTTFPIPILFCIIAS 416 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+A+Y + L + FG K+ + E + + +L +F GI P Sbjct: 417 GLTAVYFVILLNRTCFG-KLDNKLAYYPPVLKSESIPAFALTILILFLGIQP 467 >gi|222824426|ref|YP_002576000.1| NADH-quinone oxidoreductase, M subunit [Campylobacter lari RM2100] gi|222539647|gb|ACM64748.1| NADH-quinone oxidoreductase, M subunit [Campylobacter lari RM2100] Length = 489 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 164/491 (33%), Positives = 278/491 (56%), Gaps = 35/491 (7%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ PF F+ LF +SF A+ +S + +F++F+ + G I Sbjct: 2 LSLLMLFPFFAAFIALFLQ--KEDSKSF---AILVSFLILVFNIFLLFNYHGG------I 50 Query: 66 EYYHWID-YFCSYHLGVDGISILLVVLTT---FLTPFCILSSWKSIQENFREYMIAFLVL 121 Y ++ ++H+GVD I++ L++L + FL+ C+ IQ+ + +++ +L Sbjct: 51 AYEFSLNSLIVNFHIGVDAIALYLMLLCSIMIFLSFICL-----DIQD--KSVVVSIFLL 103 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 + +IG F SLD LLFY+F+E SLIP+ ++G + S+ A KFF+Y F GS+ ML A Sbjct: 104 QFCIIGLFASLDALLFYVFWEFSLIPLIYLMGRY--SDNYKAGIKFFIYAFCGSMLMLLA 161 Query: 182 IV---VMCWEKKTSSIIDLYAMSK----FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 I+ + ++ DL A K P S+Q ++I FF +FAIK P+FPFHTW P Sbjct: 162 IIYVGFLYYQSFGYWSFDLLAWYKSDFFIPESVQNLIFIGFFIAFAIKSPLFPFHTWAPK 221 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 + ++PT SV L + KM +G +RF+LPL P ++ ++ L ++ I+YA+L++ Sbjct: 222 VYAKSPTLVSVML--VSFKMAPFGFLRFILPLTPDTLNHYYSLLAVLCIVGILYAALIAF 279 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 D+K+LIAYSSI+H+G V +GI + +GV G++F M +HG+V+ LF ++Y R Sbjct: 280 KAKDLKELIAYSSISHLGVVILGIVTFTYNGVSGSVFYMFAHGIVTGGLFLAAYMLYKRY 339 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 HT D+ Y L P ++ V +++ LP T F+GEFL++ + + A+ A Sbjct: 340 HTFDLDFYKNLAKTAPLFSFFFAVLLFSSISLPLTISFVGEFLILQGIASVNLWYALFAG 399 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 ++L A+Y L +YR + F S+ EK+++L L E ++ ++ L ++ GI P + D Sbjct: 400 GVIILGAIYMLNIYRNMFFATSE-EKIEKLV-LKKGEIFVLSILSALVIYLGIAPSAMLD 457 Query: 475 TFSVPLSSIIE 485 ++ ++SI+E Sbjct: 458 EIALNVNSILE 468 >gi|281428835|ref|YP_003355012.1| NADH dehydrogenase subunit 4 [Ircinia strobilina] gi|251765335|gb|ACT15487.1| NADH dehydrogenase subunit 4 [Ircinia strobilina] Length = 469 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 173/391 (44%), Positives = 247/391 (63%), Gaps = 3/391 (0%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 GVDG+S ++L L P CIL SW+SI+ RE++I VL ++IG F LD+L FYI Sbjct: 71 GVDGLSYCFLLLVILLLPICILVSWESIKFLVREFLICLFVLSWLLIGVFTVLDILGFYI 130 Query: 140 FFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 FEA LIPMF+I+ +WG E+I A + FF +TFFGS+F+L I+++ + + + +Y Sbjct: 131 LFEAVLIPMFLIVILWGSREEKIRAGFYFFFFTFFGSVFLLLGIILLYIKVGATDYMYIY 190 Query: 199 AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 F Q ++I FF AIK+P+FPFH WLP AHV+AP AGSV L GI+LK+GGYG Sbjct: 191 NYKINNFW-QCLLFILFFLGXAIKVPLFPFHIWLPQAHVEAPVAGSVLLXGILLKLGGYG 249 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +R L LFP+ ++Y + + L L+A+IY SL + Q D+K+++AYSS+AHMG V +G+ Sbjct: 250 FLRXSLGLFPIGAEYCSSFVLTLGLLAVIYGSLXTCRQVDLKRVVAYSSVAHMGIVVLGL 309 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 FS G G ++ M +HGLVS LF V +YDR +TR I Y G+ MP + + Sbjct: 310 FSLTSEGEIGGIYLMFAHGLVSPGLFIAVTCLYDRYNTRLIRYYRGIWVKMPVFCFFFFL 369 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 T+AN+GLP + F+GEFL +M +FQ S + + VVLSA YSL+LY +V FG + Sbjct: 370 LTLANLGLPLSLNFVGEFLCLMGLFQYSWYFGLCSCLSVVLSAAYSLYLYNRVAFG-AYS 428 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + + +DL+ RE + ++ L GI P Sbjct: 429 KYMAGGRDLNRREVYVFVVLSCLVYLLGICP 459 >gi|328672366|ref|YP_004362955.1| NADH dehydrogenase subunit 4 [Pichia pastoris CBS 7435] gi|328354785|emb|CCA41181.1| NADH dehydrogenase subunit 4 [Pichia pastoris CBS 7435] Length = 369 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 129/357 (36%), Positives = 211/357 (59%), Gaps = 3/357 (0%) Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 F+ LD++ FYI FE++L P+F++IG++G + + AAY +YT S+FML +IV+ Sbjct: 10 FICLDLVSFYILFESTLAPLFLLIGIYGANNKNKAAYYVLIYTLASSLFMLLSIVIYYII 69 Query: 189 KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ I + + ++Q ++I A+K P+ P HTWLP H ++P GS+ LA Sbjct: 70 INSTDYIYINNI-ILSINLQSLLFIGIIIGIAVKTPLMPVHTWLPTVHSESPLGGSILLA 128 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+ YG IR LLP S F P+I+ +S++ +IY+SL+++ QTD+K +IAYSSI Sbjct: 129 GVILKLAIYGVIRLLLPNLSEISMMFTPIIYIISILTLIYSSLITLKQTDLKVIIAYSSI 188 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVH 367 +H+ IGIF+ G+ G++ L+HG VS ALF V G++YDR H R I Y GL Sbjct: 189 SHLAVCMIGIFANNLIGINGSLILCLAHGFVSPALFILVGGILYDRYHNRLINYYQGLST 248 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 MP +++ ++VF+ N G P + F+GEFL I + L + V+LSA Y + L Sbjct: 249 FMPIFSIYLVVFSFCNTGTPLSGNFVGEFLSITGAVIRHPIIGSLTAASVLLSACYQMKL 308 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSII 484 ++ G + + D++ RE ++ + + T+ GIYP + + ++ S++I Sbjct: 309 TNRLT-GSVFSQYLHITNDVTNREIFLLNWLLIPTIIIGIYPSFVTNILNLASSTLI 364 >gi|195975768|ref|YP_002122398.1| NADH dehydrogenase subunit 4 [Candida neerlandica] gi|162423308|gb|ABX89447.1| NADH dehydrogenase subunit 4 [Candida neerlandica] Length = 357 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 122/341 (35%), Positives = 203/341 (59%), Gaps = 9/341 (2%) Query: 133 DMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI---VVMCWEK 189 DML FY++FEASL P+F++IG++G + R A+ +YT F S+FML AI V+ Sbjct: 4 DMLSFYVYFEASLAPLFILIGLYGANNRDKASDYILIYTLFSSLFMLLAIGTYEVLIGNT 63 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 SI ++ +Q ++I+ +K P+ P HTWLP H ++P AGS+ LAG Sbjct: 64 DYQSI----SLVVLNTDLQCILFISLSIGIMVKTPLVPVHTWLPVVHSESPLAGSMLLAG 119 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+ Y IR ++P A+ + PV++ + +I IIY SL+++ Q+D+K ++AYSSI+ Sbjct: 120 VILKLAIYAIIRLIIPSLSDATVLYTPVVYLICVITIIYTSLITLRQSDLKVIVAYSSIS 179 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHN 368 HM +GI S G+ G++ L+HG VS ALF V G++YDR H R I+ Y GL+ Sbjct: 180 HMAVCILGILSNSIYGIHGSLIMSLAHGFVSPALFIIVGGILYDRYHNRLIYYYQGLITY 239 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 MP ++ +++ + +N+G P T F+GE + Q S+ + +++ V+LSA Y L + Sbjct: 240 MPILSIYLLILSFSNIGTPLTVNFLGELFSLTGAIQRSSILGAISALSVLLSAAYMLKVT 299 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++ G+ K V D + RE ++ + + T+++G++P Sbjct: 300 NRLTGGI-KSPFVSLTSDCTFRENILMLSLIIPTIWYGLFP 339 >gi|86606257|ref|YP_475020.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 4 family protein [Synechococcus sp. JA-3-3Ab] gi|86554799|gb|ABC99757.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family [Synechococcus sp. JA-3-3Ab] Length = 505 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 156/403 (38%), Positives = 224/403 (55%), Gaps = 10/403 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENFR 112 FD QM E WI Y LGVDGIS+ LVV+T L +++ W S E R Sbjct: 50 FDPQAQGIQMAEQMAWIPQLGLVYELGVDGISLPLVVMTGLL---VLIALWASGPVERPR 106 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF 172 Y L+L + ++GAFL+ ++LLF++F+E LIP++++I +WGG R YAA KF +YT Sbjct: 107 LYYSLVLLLAAAIVGAFLAQNLLLFFLFYEVELIPLYLLIAIWGGPRRTYAATKFLVYTA 166 Query: 173 FGSIFMLFAIVVMCWEKKTSSII-DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 + +L + W S + P Q + I AIKIP+ PFHTW Sbjct: 167 LSGVLLLIGFFGLSWLSDAHSFTYTVLQAHPLPLLPQILILIPILLGLAIKIPLVPFHTW 226 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+AHV+A T SV LAG++LK+G YG +RF L L P A + P + ++ ++Y SL Sbjct: 227 LPDAHVEASTPISVLLAGLLLKLGTYGLVRFGLQLLPDAWEQAGPWLASWAVANVLYGSL 286 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++VQ D+KKL+AYSSIAHMGY+ +G + + G++FQM+SHGL+SS LF VG +Y Sbjct: 287 NALVQQDMKKLVAYSSIAHMGYILLGTAAATPLSLVGSVFQMVSHGLISSLLFLLVGAVY 346 Query: 352 DRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 TRD+ GL++ +P +M++ MA+ G PG GFI EF + F Sbjct: 347 ANTGTRDLKRLRGLLNPERGLPLVGSLMVLGVMASGGTPGLVGFIAEFTLFRGSFPVFPL 406 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFG-VSKCEKVQQLKDLSLR 450 +L G L+A Y L + +V FG +S+ Q + R Sbjct: 407 QTLLCMVGTGLTAAYFLLMVNRVFFGRLSEVAIAMQRRATGER 449 >gi|209523373|ref|ZP_03271928.1| proton-translocating NADH-quinone oxidoreductase, chain M [Arthrospira maxima CS-328] gi|209496115|gb|EDZ96415.1| proton-translocating NADH-quinone oxidoreductase, chain M [Arthrospira maxima CS-328] Length = 503 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 154/442 (34%), Positives = 248/442 (56%), Gaps = 13/442 (2%) Query: 6 LSIVTFLPFLGVFVI--LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS++ +P +G +I L SS+ RS +AL + + +L + FD FQ Sbjct: 2 LSLLIAIPLVGSLLIGLLPSSFTSQRIRS---IALAFMAVTGLLTLKLTLDFDLDNPGFQ 58 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 EY WI SY L +DG+S+ LV L+ LTP I SS + R Y L++ Sbjct: 59 WEEYLPWIPQLGLSYSLAMDGLSLPLVGLSAILTPMAIASSRPDMNRP-RLYYSMILLVN 117 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + + GAFLS ++LLF +F+E LIP++++I +WGG +R YAA KF +YT I +L Sbjct: 118 AAIAGAFLSQNLLLFVLFYELELIPIYLLISIWGGEKRGYAAMKFLIYTAISGILILAGF 177 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + W + S D A++ S Q + F IKIP+ P HTWLP+A+V++ Sbjct: 178 LGIAWLSGSGSF-DFNAINTQNLSSISQLLLMTILLIGFGIKIPLVPLHTWLPDAYVESS 236 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 ++ L G++ K+G YG IRF L LFP Q AP + +++ +++Y +L ++ Q DIK Sbjct: 237 APVTILLGGLLAKLGTYGLIRFGLQLFPETWQIIAPGLSIVAVFSVMYGALTAISQQDIK 296 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 +++AYSSI HMGY+ + + +G + + GA+ QM++HGL+ + LF VG++ ++ TRD+ Sbjct: 297 RMVAYSSIGHMGYIIVAMAAGTEVSLIGAISQMVAHGLILAILFHLVGIVEVKVGTRDLK 356 Query: 361 AYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 GL++ +P + ++++ MA+ G+PG GF+ EFLV F ++L Sbjct: 357 LLNGLMNPLRGLPLTSALLIMAGMASAGIPGLVGFVAEFLVFQGTFAVFPIQSLLCIIAS 416 Query: 418 VLSALYSLWLYRKVVFGVSKCE 439 L+A+Y + L + FG E Sbjct: 417 GLTAVYFVILLNRTCFGKLDNE 438 >gi|307748422|gb|ADN91692.1| NADH-ubiquinone oxidoreductase, NQO13 subunit (NQO13) [Campylobacter jejuni subsp. jejuni M1] Length = 495 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 154/457 (33%), Positives = 261/457 (57%), Gaps = 46/457 (10%) Query: 46 IFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 IF+ F+ V SF++++++ S+H+GVD I+++L++L++ + S+ Sbjct: 42 IFADFLQGVSFDYNLSFKILKFF-------SFHVGVDSIALILMLLSSLMI----FLSFL 90 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 ++ + + LE ++G F + D LLFY+F+E SL+P+ I+GV+G R A Sbjct: 91 FLKLEQKALVSCIFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFR--AGV 148 Query: 166 KFFLYTFFGSIFMLFAIV----------------VMCWEKKTSSIIDLYAMSKFPFSIQY 209 KFF+Y F GSI ML A++ + W+ S++ F+ Q Sbjct: 149 KFFIYAFAGSILMLIALIYQAYLNYQLLNIFTFDLEIWKNNASAV---------NFTEQL 199 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 ++ AFF +FAIK P+FP HTW P +V +P SV L ++ KM +G + F LPLFP Sbjct: 200 LLFGAFFIAFAIKAPLFPLHTWAPKVYVNSPVLVSVML--VVFKMAPFGFLLFCLPLFPD 257 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 AS YF P+I L +++I+Y +L++ +IK+LIAYSSI+H+G + +GIFS G+ GA Sbjct: 258 ASVYFMPLIVALCIVSIVYNALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGA 317 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F M +HG+V+ ALF V ++Y R HT DI Y L P +++ M+ +A++ LP T Sbjct: 318 VFYMFAHGIVTGALFLMVELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLT 377 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 F+GEFL+++ + + + A+LA ++L A+Y ++RK+ F +K +++ SL Sbjct: 378 VSFVGEFLILLGIAKINLFYALLAGLVIILGAIYMFAVFRKIFF----MQKQSFIENFSL 433 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 R R +V + ++ + FG+ +P + P+ ++N Sbjct: 434 RLREIVALVCIIVMIFGLGLMP--NILLKPIQKDVDN 468 >gi|283953820|ref|ZP_06371351.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794861|gb|EFC33599.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni 414] Length = 495 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 166/502 (33%), Positives = 278/502 (55%), Gaps = 56/502 (11%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS----- 60 L+ + F P + FV+L + G S L +S + +L +++ F +G S Sbjct: 2 LNYLIFFPLIAAFVVLLLNRGGVKVFS-----LVVSFMILALNLDIFADFLQGTSFDYNI 56 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 SF++++++ S+H+GVD I+++L++L++ I S+ ++ + Sbjct: 57 SFKILKFF-------SFHIGVDSIALVLMLLSSL----MIFLSFLFLKVEQKALASCIFF 105 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE ++G F + D LLFY+F+E SL+P+ I+GV+G R A KFF+Y F GSI ML Sbjct: 106 LEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFR--AGVKFFIYAFAGSILMLV 163 Query: 181 AIV----------------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 A++ + W+ S++ F+ Q ++ AFF +FAIK P Sbjct: 164 ALIYQAYLNYQLLNIFTFDLEIWKNNASAV---------NFTEQLLLFGAFFIAFAIKAP 214 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 +FP HTW P + +P SV L ++ KM +G + F LPLFP AS YF P+I L ++ Sbjct: 215 LFPLHTWAPKVYANSPVLVSVML--VVFKMAPFGFLLFCLPLFPDASVYFMPLIIALCIV 272 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +I+Y +L++ +IK+LIAYSSI+H+G + +GIFS G+ GA+F M +HG+V+ LF Sbjct: 273 SIVYNALIAYKTENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGVVTGVLF 332 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 + V+Y R HT DI Y L P +++ M+ +A++ LP T F+GEFL+++ + + Sbjct: 333 LMIEVLYQRYHTHDIAFYHSLAKKAPLFSIFFMLILLASVSLPLTISFVGEFLILLGIAK 392 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + A LA ++L A+Y ++RK+ F + E V ++ SLR R +V + V+ + Sbjct: 393 INLFYAFLAGLVIILGAIYMFAVFRKIFF--MQGESV--IEAFSLRFREVVALVCVVIII 448 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 FG+ +P +T P+ ++N Sbjct: 449 FGLGLMP--NTLLKPIQKDVDN 468 >gi|271965153|ref|YP_003339349.1| proton-translocating NADH-quinone oxidoreductase subunit M [Streptosporangium roseum DSM 43021] gi|270508328|gb|ACZ86606.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptosporangium roseum DSM 43021] Length = 496 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 156/434 (35%), Positives = 241/434 (55%), Gaps = 21/434 (4%) Query: 69 HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 WI YH+GVDG+S+ L+ +T L C + S + + R Y FL L+++ +G Sbjct: 60 RWIPSVGAGYHVGVDGMSLPLMAMTALLFLVCSIYSLRGTRRA-RAYAALFLSLQTVCLG 118 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV--VM 185 F +LD+LLF++FF+ S++ M+ +I WG +R+ +A KFFLYTF GS+ +L + + Sbjct: 119 LFAALDLLLFFVFFDLSIVGMYFVIAGWGHGDRLRSALKFFLYTFLGSLALLLGFIGLYL 178 Query: 186 CWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + +T ++DL F + + +A A+K P PFHTWLP AH AP AG Sbjct: 179 GGDPRTFDMVDLTRAPPFAGAPGTAGLVLLAVGVGLAVKTPTVPFHTWLPPAHTDAPAAG 238 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S LAG+MLKMG YG R +P+ P A Q A V + ++Y +LV++ Q D+K+LI Sbjct: 239 SAILAGVMLKMGTYGFARIAMPMLPGAWQRHAWVFVVAGVAGVLYGALVALAQDDLKRLI 298 Query: 304 AYSSIAHMGYVTIGI-FSGMKSG--------VEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 AY+S+ HMGY+ + + +G+ +G V GA+ QM+SHGLV+ ALF GV++DR Sbjct: 299 AYTSVNHMGYIVLALGAAGLVAGDARARELAVSGAVTQMVSHGLVTGALFLLTGVLWDRA 358 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 + D+ +GG+ P + + V A++GLPG SGFI EF + V V+A Sbjct: 359 RSYDLDGFGGIAATAPIFTGLTAVAAFASLGLPGLSGFIAEFQIFAGVIGIGTPGGVVAG 418 Query: 415 F----GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 GV+++A L + KV G E ++ D+ E V P+ +L++ GI P Sbjct: 419 ALSVTGVLITAALLLRMLHKVYLG-RPGELTPRVTDVRPDELAAVAPLMILSLIIGIAPR 477 Query: 471 PIRDTFSVPLSSII 484 + D P+S+ + Sbjct: 478 WLLDMIE-PVSAAV 490 >gi|296099734|gb|ADG95331.1| NADH dehydrogenase subunit 4 [Polypterus weeksii] Length = 459 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 144/394 (36%), Positives = 221/394 (56%), Gaps = 18/394 (4%) Query: 61 SFQMIEYY---HWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFRE 113 S +++YY W++ +Y + D IS L+VLT +L P IL+S I R Sbjct: 38 SLTLLKYYSTTQWLN--LNYIMATDMISTPLIVLTCWLLPLMILASQNHISAEPVNRQRS 95 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 Y+ + L++++I AF + +++LFYI FEA+LIP +II WG +ER+ A F YT Sbjct: 96 YITLLVSLQTLLIMAFSATEIILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTL 155 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPF 228 GS+ +L A++ + T+ + + +M+ S W +W+A +F +K+P++ Sbjct: 156 AGSLPLLVALLYL---YSTAGSLSMISMNLITISPDTWTNTFLWVACVIAFLVKMPLYGI 212 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA ++LK+GGYG IR + L P A++ A L+L II Sbjct: 213 HLWLPKAHVEAPIAGSMILAAVLLKLGGYGMIRMTIMLEP-ATKSLAYPFIILALWGIIM 271 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + M Q+D+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Sbjct: 272 TGSICMRQSDMKSLIAYSSVSHMGLVASGILIQTTWGFTGAIILMIAHGLTSSALFCLAN 331 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 Y+R H+R + G+ MP A + ++ANM LP +GE ++++S+F SN Sbjct: 332 TTYERTHSRTLLLARGMQVIMPLMATWWFIMSLANMALPPLPNLMGELMILVSMFNWSNW 391 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQ 442 +L G +++A YSL+LY G + V Sbjct: 392 TILLTGTGTLITAAYSLYLYMSSQRGPTPNNLVS 425 >gi|299829099|ref|YP_003735114.1| NADH dehydrogenase subunit 4 [Hydrolagus lemures] gi|298110911|gb|ADI57862.1| NADH dehydrogenase subunit 4 [Hydrolagus lemures] Length = 458 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 141/394 (35%), Positives = 220/394 (55%), Gaps = 20/394 (5%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + +LGVD +S L++LT +L P I++S ++ R Y+ +VL+ +I AF Sbjct: 52 FTNNYLGVDPLSSPLMILTCWLLPLMIMASQNHLKMEPANRQRLYITLLIVLQLSLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S++++LFYI FE +LIP ++I WG ER+ A F YT GS+ +L A++ M + Sbjct: 112 SSMELILFYIMFETTLIPTLILITRWGNQKERLNAGLYFLFYTLMGSLPLLVALLTM--Q 169 Query: 189 KKTSSIIDLYAMSKFPFSIQY---WM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 T S+ +++ PFS + W W A +F +K+P++ H WLP AHV+AP Sbjct: 170 SFTHSL----SLTMMPFSQNHTNDWANILWWAACLIAFLVKMPLYGVHLWLPKAHVEAPI 225 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA I+LK+GGYG +R ++ L PL Y P I LS+ ++ + + QTD+K Sbjct: 226 AGSMILAAILLKLGGYGMMRIIIILDPLTKDYAYPFIV-LSVWGMVMTGSICLRQTDLKS 284 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG VT I GAM M+SHGL+SSALF Y+R+H+R + Sbjct: 285 LIAYSSVSHMGLVTAAILIQTPWSFMGAMVLMISHGLISSALFCLANTNYERIHSRTLLL 344 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GL +P + +AN+ LP ++ +GE +++ S+F S +L FG +++ Sbjct: 345 ARGLQTILPLMTTWWFLTNLANLALPPSTNLLGELMIMTSLFSWSMWTLILTGFGTLITV 404 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 YSL+++ G S + + RE M+ Sbjct: 405 CYSLYMFLMTQRG-SALTPLTSITPTHTREHLMI 437 >gi|280978317|ref|YP_003345251.1| NADH dehydrogenase subunit 4 [Nemichthys scolopaceus] gi|271280499|dbj|BAI53324.1| NADH dehydrogenase subunit 4 [Nemichthys scolopaceus] Length = 460 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 136/390 (34%), Positives = 214/390 (54%), Gaps = 13/390 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 S +L D +S L+VL+ +L P IL+S + R Y+I + L+ + AF Sbjct: 53 ASLYLATDPLSSPLLVLSCWLLPLTILASQNHMNSEPLSRQRTYIILLISLQMALTAAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 113 ATEIIMFYIMFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMI--QK 170 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 ++ L + P ++ W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 DLGTLSMLTSQYAPPLALNMWYHKTWWAACLVAFLVKMPLYGLHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R + L PL Q P + L+L II + + QTD+K +IAY Sbjct: 231 ILAAVLLKLGGYGMMRMIAMLTPLTEQMAYPFVV-LALWGIIMTGTICLRQTDLKSMIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILTQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QVILPLMASWWFIINLANLALPPLPNLMGELMIITSLFNWSKWTITLTGLGTLITAAYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + + + L RE +V Sbjct: 410 YMFLMTQRGPTP-KHITNLDPSHTREHLLV 438 >gi|146221454|gb|ABQ11853.1| NADH dehydrogenase subunit 4 [Sympagella nux] Length = 461 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 141/374 (37%), Positives = 233/374 (62%), Gaps = 2/374 (0%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 L +D +S +L++LT+ L IL S K+I + I ++ + F + +++FY Sbjct: 77 LCIDKLSTILMLLTSLLIITSILISKKTIYHTHKSLHICLSIIIITLFLTFTTSSLIIFY 136 Query: 139 IFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL 197 I FE+S+IP+ +IIG+WG E+I A Y F LYT GS+ + I+++ + T L Sbjct: 137 IMFESSIIPLIIIIGLWGSRKEKIRATYYFLLYTIIGSLPLFITILIIHNKLGTYDTTIL 196 Query: 198 YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 + P+ +Q ++ FF +FAIK P+ P+H+WLP AHV+AP GSV LAGI+LK+G Y Sbjct: 197 QNIPINPY-LQLKLFTGFFLAFAIKTPLIPWHSWLPLAHVEAPAIGSVLLAGILLKLGTY 255 Query: 258 GCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 G IRF +P+ P ++Y +P+I +S+I+I AS+ S+ Q DIK++IAYSSIAHMG +T Sbjct: 256 GFIRFTIPILPHTAKYLSPIIISISIISIWSASINSLRQNDIKRIIAYSSIAHMGIITAA 315 Query: 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMM 377 FS GA+ MLSHGL SSALF + IY+R +R I + GL ++ P + ++ Sbjct: 316 CFSINPISKTGAILLMLSHGLTSSALFTLMSYIYERHKSRLIKNFQGLSYHTPLLSTFII 375 Query: 378 VFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSK 437 + ++A+MG PG++ F+GE+L ++ +++ ++ + ++ G+++ ++Y L LY ++ + Sbjct: 376 ITSLAHMGTPGSTNFLGEYLCLLGLWETHPSITISSTIGMIIGSIYLLLLYIQITSSKTN 435 Query: 438 CEKVQQLKDLSLRE 451 + +DL+L E Sbjct: 436 LYIKYKTQDLTLNE 449 >gi|261416722|ref|YP_003250405.1| proton-translocating NADH-quinone oxidoreductase, chain M [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373178|gb|ACX75923.1| proton-translocating NADH-quinone oxidoreductase, chain M [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327967|gb|ADL27168.1| NADH-quinone oxidoreductase, M subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 504 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 136/424 (32%), Positives = 234/424 (55%), Gaps = 10/424 (2%) Query: 70 WIDYFCSYHL-GVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 W+ F ++++ G DG+++LL+ LT F+ +L S K I+ N + + +L + V G Sbjct: 78 WLSMFNAHYIVGADGLNMLLLALTAFIVWAGVLVSLK-IKGNQKIFFALIQLLATSVYGV 136 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 ++S D++LF++F+E + M+++I +G +R Y K L FGS +L + + +E Sbjct: 137 YMSFDLVLFFVFYEMEALCMYLMIACYGSGKRDYGGKKLTLTLAFGSSMILATLFGLYFE 196 Query: 189 KKTSS--IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 +S +I++ A + P Q W + F FA+ +FPFH W P+ H APTA S+ Sbjct: 197 SGATSWNLIEI-AKTTLPMDFQMWAFPLMFMGFAVSSSLFPFHFWSPDGHSAAPTAVSML 255 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 AG+M+KMG YGC+R + L P A++ + P + L + ++ +++ D+K + AYS Sbjct: 256 AAGVMMKMGAYGCLRVAMFLMPEAAKIWLPYVVALLIFNVVLGPFIAIRHKDLKYITAYS 315 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 SI+H+G + +G+ + G+ GA QM+SHG ++ F +G+IY+R HTRDI GG++ Sbjct: 316 SISHLGLIFLGLAALTPIGLRGASLQMISHGFLTGLFFATIGMIYERTHTRDITEMGGIM 375 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT----VAVLASFGVVLSAL 422 MP V ++ A +GLPG SGFI E + + FQ +T V +LA + +A+ Sbjct: 376 RKMPFLGVGFVLAGFAGLGLPGFSGFIAESTIFIGAFQQDSTLTRIVTILAILSITTTAV 435 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y L +++ G +K + L D RE+ ++ + +F G+ P I + ++ Sbjct: 436 YILQTANRMLHG-PLPQKYESLTDGCFREKLVIVVLVACLLFIGVCPGWISELLDQSIAP 494 Query: 483 IIEN 486 I E Sbjct: 495 IFEK 498 >gi|90995398|ref|NP_943641.2| NADH dehydrogenase subunit 4 [Candida parapsilosis] gi|88687135|emb|CAE54604.2| NADH dehydrogenase subunit 4 [Candida parapsilosis] gi|183229568|gb|ACC60282.1| Nad4p [Candida parapsilosis] Length = 461 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 146/402 (36%), Positives = 235/402 (58%), Gaps = 10/402 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFF 141 DGI+ + ++LT +L P I+++W SI+ Y + F L +++ F+ DML FYI+F Sbjct: 52 DGIADIFILLTAYLLPLSIIANWNSIKSTLY-YELVF-NLGIILLINFMCQDMLSFYIYF 109 Query: 142 EASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS 201 EASL P+F++IG++G + R AA +YT S+FML AI V +E + D A+S Sbjct: 110 EASLAPLFILIGLYGANNREKAADYILIYTLLSSLFMLIAIAV--YEVLIGNT-DYQAVS 166 Query: 202 KFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 S+ Q +++ +K P+ P HTWLP H ++P AGS+ LAG++LK+ Y Sbjct: 167 LLVLSLDLQCILFLGISIGIMVKTPLVPVHTWLPVVHSESPLAGSMLLAGVILKLAVYAI 226 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 IR +LP AS + PV++ + +I IIY S++++ QTD+K ++AYSSI+HM +GI Sbjct: 227 IRLILPTLSDASTLYTPVVYMICVITIIYTSIITLRQTDLKVIVAYSSISHMAVCILGIM 286 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 S G+ G++ ++HG VS ALF V G++YDR H R I+ Y GL+ MP A+ +++ Sbjct: 287 SNNIIGISGSLILSIAHGFVSPALFIIVGGILYDRYHNRLIYYYQGLLTYMPILAIYLII 346 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 + N+G P + FIGE L + + LA V+LSA Y L + ++ G+ K Sbjct: 347 LSFCNIGTPLSVNFIGELLSLAGALNRVPVLGALALISVLLSASYMLKVTNRLTGGI-KT 405 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD-TFSVP 479 + D + RE ++ + + T+++G+YP I + +S+P Sbjct: 406 PYISLTHDCTYRESVLLISLIIPTIWYGLYPNGIANMIWSIP 447 >gi|269794085|ref|YP_003313540.1| NADH dehydrogenase subunit M [Sanguibacter keddieii DSM 10542] gi|269096270|gb|ACZ20706.1| NADH dehydrogenase subunit M [Sanguibacter keddieii DSM 10542] Length = 567 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 171/550 (31%), Positives = 287/550 (52%), Gaps = 60/550 (10%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFD-KGRS 60 N+P+L+++ +P +G V+ + RR VALG S + + + + FD S Sbjct: 6 NIPWLTLLAVVPLVGAAVVWALPH--GSRRLARPVALGFSLLEVVLVVLAVAAFDTSAAS 63 Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI------------ 107 + Q++E + WI SY LGVDG+ +LLV L+ L P I ++W+ Sbjct: 64 THQLVETHAWIPQIGASYALGVDGVGLLLVALSVGLVPLVIGAAWREQGVEDAVSTVSTV 123 Query: 108 --------------------------------QENFREYMIAFLVLESMVIGAFLSLDML 135 + R Y+ LVL++ ++ F + D+ Sbjct: 124 STEGAAGAAGAAAPARGAGTAKSPAGADDRPGEGRLRHYLALVLVLQTFMVLVFSARDVF 183 Query: 136 LFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS- 193 LFY+ FEA L+P++ +IG +G G+ R YAA KF +++ G + ML A++V+ + Sbjct: 184 LFYVVFEAMLVPVYFMIGGFGEGARRRYAAIKFLIFSLAGGLVMLAAVIVLYVQGPGGEQ 243 Query: 194 --IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + + +++ FF +FAIK PMFP H+WLP+A AP SV L G++ Sbjct: 244 GFLTENLTGLGLDQTTERLLFLGFFLAFAIKAPMFPVHSWLPDAAEHAPAGTSVLLVGVL 303 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 K+G +G + LPLFP AS++ APV+ L++++IIY +L+++ Q D+ +L+AY+S++H Sbjct: 304 DKVGTFGMLTLCLPLFPDASRWAAPVVIVLAVVSIIYGALLALGQDDLMRLVAYTSVSHF 363 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL---HTRDIFAYGGLVHN 368 G + +GIF+ + V GA F M++HG+ + LF G + R +R I GGL Sbjct: 364 GVIVLGIFAFTQLSVSGASFYMVNHGISTGLLFLVGGFVVRRTVSGRSRRISELGGLAKV 423 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A V ++ ++ + LPG S F+ E +V + F A++++ VVL+ALY L Y Sbjct: 424 TPVLAGVFLLAGLSALSLPGLSTFVSEIMVFIGAFGRYPVAAIVSAVVVVLAALYVLLTY 483 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYT 488 +++ G + E + +++DLS RER +V P+ V + G P P D P + +E Sbjct: 484 QRIFTGPVRPE-LAEVRDLSARERWVVAPLVVALLVLGFVPGPALDLVGDPAAVTLE--- 539 Query: 489 LKTGYSDSVK 498 + G +D V Sbjct: 540 -QVGVTDVVP 548 >gi|170785413|gb|ACB37770.1| NADH dehydrogenase subunit 4 [Candida orthopsilosis] gi|224474103|gb|ACN49294.1| Nad4p [Candida orthopsilosis] Length = 455 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 146/402 (36%), Positives = 235/402 (58%), Gaps = 10/402 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFF 141 DGI+ + ++LT +L P I+++W SI+ Y + F L +++ F+ DML FYI+F Sbjct: 52 DGIADIFILLTAYLLPLSIIANWNSIKSTLY-YELVF-NLGIILLINFMCQDMLSFYIYF 109 Query: 142 EASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS 201 EASL P+F++IG++G + R AA +YT S+FML AI V +E + D A+S Sbjct: 110 EASLAPLFILIGLYGANNREKAADYILIYTLLSSLFMLIAIAV--YEVLIGNT-DYQAVS 166 Query: 202 KFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 S+ Q +++ +K P+ P HTWLP H ++P AGS+ LAG++LK+ Y Sbjct: 167 LLVLSLDLQCILFLGISIGIMVKTPLVPVHTWLPVVHSESPLAGSMLLAGVILKLAVYAI 226 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 IR +LP AS + PV++ + +I IIY S++++ QTD+K ++AYSSI+HM +GI Sbjct: 227 IRLILPTLSDASTLYTPVVYMVCVITIIYTSIITLRQTDLKVIVAYSSISHMAVCILGIM 286 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 S G+ G++ ++HG VS ALF V G++YDR H R I+ Y GL+ MP A+ +++ Sbjct: 287 SNNIIGISGSLILSIAHGFVSPALFIIVGGILYDRYHNRLIYYYQGLLTYMPILAIYLII 346 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 + N+G P + FIGE L + + LA V+LSA Y L + ++ G+ K Sbjct: 347 LSFCNIGTPLSVNFIGELLSLAGALNRVPVLGALALISVLLSASYMLKVTNRLTGGI-KT 405 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD-TFSVP 479 + D + RE ++ + + T+++G+YP I + +S+P Sbjct: 406 PYISLTHDCTFRESVLLISLIIPTIWYGLYPNGIANMIWSIP 447 >gi|329938291|ref|ZP_08287742.1| NADH dehydrogenase subunit NuoM2 [Streptomyces griseoaurantiacus M045] gi|329302780|gb|EGG46670.1| NADH dehydrogenase subunit NuoM2 [Streptomyces griseoaurantiacus M045] Length = 524 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 163/438 (37%), Positives = 239/438 (54%), Gaps = 33/438 (7%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQENFREYMI 116 S Q WI HLGVDGIS+ L+VLT LT C L S+ + + ++ Sbjct: 72 SKMQATTDISWIPALHVRLHLGVDGISLPLLVLTALLTFLCALYSYFKPAAGPAPKAFVS 131 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+LE + F LD+LLF++ FE LIPM+ +I WGG++R AA++F LYT GS+ Sbjct: 132 LLLLLEGGTLATFAVLDLLLFFLAFETVLIPMYFLIARWGGADRARAAWRFILYTLLGSV 191 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 ML ++++ + T ++ L + S+Q +A A+K PM+P H+WLP+ Sbjct: 192 IMLLGLLLIGIKAGTFDMVALATDNGRSLTASVQVVAVLAIGVGLAVKTPMWPLHSWLPD 251 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH APT GSV LAG++LKMG YG +R LLP P FAP + L++ IIY SL + Sbjct: 252 AHTAAPTVGSVLLAGVLLKMGTYGFVRILLPAAPHGFHTFAPYLAALAVAGIIYGSLACL 311 Query: 295 ------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ LFF VG Sbjct: 312 ALAREGAKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGLLFFLVG 371 Query: 349 VIYDRLHTRDI---------FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 + DR T D+ YG PR ++ +A++GLPG +GF GE L + Sbjct: 372 GLKDRTGTVDLDALAKGAGAALYG----RAPRLGGLLAFAAVASLGLPGLAGFWGEMLAL 427 Query: 400 MSVFQNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 F + T +A+FG +L+A Y L + R+V G ++ +L D+ E Sbjct: 428 FGAFDPAAGLSRPAFLTFMAIAAFGTLLTAAYMLVVVRRVCMGAVP-QEAPKLTDVHTFE 486 Query: 452 RCMVYPIAVLTVFFGIYP 469 P+ VLTV G++P Sbjct: 487 YAAWAPLVVLTVLAGLWP 504 >gi|159036139|ref|YP_001535392.1| proton-translocating NADH-quinone oxidoreductase, chain M [Salinispora arenicola CNS-205] gi|157914974|gb|ABV96401.1| proton-translocating NADH-quinone oxidoreductase, chain M [Salinispora arenicola CNS-205] Length = 503 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 159/441 (36%), Positives = 250/441 (56%), Gaps = 12/441 (2%) Query: 58 GRSSFQMIEYYHWIDY------FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE-- 109 G S + +H +D +HLGVDGIS LVVLT LT C + + Sbjct: 61 GTDSTPAVRPWHQVDLPWVPGLDLRFHLGVDGISWPLVVLTALLTLLCCGYTLGRVPSGG 120 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFL 169 + R + L++E ++G FL+LD++LF++FFE L+PM+ II WGG +R AA KF L Sbjct: 121 SGRALVALLLLVEVGILGTFLALDLVLFFVFFEVVLLPMYAIIAGWGGPDRHRAARKFAL 180 Query: 170 YTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH 229 YT FGS+ +L ++V+ T+ ++ L + Q + +FA+K P++P H Sbjct: 181 YTLFGSVLLLVGVLVVVTTAGTADVVALTGGTGLSRGPQLAAFTLLALAFAVKSPLWPLH 240 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 +WLP+AH QAPT GSV LAG++LKMG YG IR + + P + + APV+ L++ AI+ Sbjct: 241 SWLPDAHTQAPTVGSVILAGVLLKMGTYGLIRIAVGVAPEGADWAAPVLGVLAVAAILVG 300 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 SLV + QT++K+LIAYSS+ HMG+V +G+ + +G++ A+ ++HG+++ LFF G Sbjct: 301 SLVCLAQTELKRLIAYSSVGHMGFVLLGVATLTGTGLQAALIGNVAHGIITGLLFFLAGA 360 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-- 407 + DR HT D+ GL PR A V+ +A++GLPG +GF GE +++ + Sbjct: 361 VKDRAHTGDLVDLSGLRETAPRLAGVLGFAAVASLGLPGLAGFWGEAFAVVAAVRVGGPL 420 Query: 408 --TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFF 465 T+AVLA+ G L+A Y L L R+V G ++ E P+ +LT+ Sbjct: 421 WLTLAVLAALGGALTAAYLLRLLRQVTHGRPSPAVASVRPGVAGVELVTWAPLVLLTLAV 480 Query: 466 GIYPVPIRDTFSVPLSSIIEN 486 G+ P+ + P+ +++ Sbjct: 481 GLAPILVLGVAHAPVDALLAG 501 >gi|326775104|ref|ZP_08234369.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces cf. griseus XylebKG-1] gi|326655437|gb|EGE40283.1| proton-translocating NADH-quinone oxidoreductase, chain M [Streptomyces cf. griseus XylebKG-1] Length = 501 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 171/491 (34%), Positives = 267/491 (54%), Gaps = 28/491 (5%) Query: 6 LSIVTFLPFLGVFVILFSSYLGC--GRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS++ FLP L V L S L G R+F G L +W+ D S + Sbjct: 2 LSLIVFLPAL---VALALSVLPARLGPRAFAGAWTATGLAQLALVLALWT--DLPASGYG 56 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 +E WI SYHLGVDG+S+ L+ LT + + SW+ + + +++ FL L+ Sbjct: 57 AVERREWIPSAGISYHLGVDGLSLPLLALTAVVFTATAVHSWRQ-ADRPKNFVLVFLALQ 115 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFA 181 ++ G F+SLD++LF++FF+ S++ M+ +I WG G+ AA FFLYTF GS+ +L Sbjct: 116 TVSTGLFVSLDLILFFLFFDLSIVFMYFVIAGWGIGAPAREAALTFFLYTFLGSLALLLG 175 Query: 182 IVVMCWEKKTSS--IIDLYAMSKFPFSIQY--WMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 +++ T + I +L A++ Y +A +K P+FPFHTWLP AH Sbjct: 176 FILLALAADTPTFDIPELAALNPLAGGGTYAALTLLALGIGLGVKTPVFPFHTWLPPAHT 235 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +AP AGS LAGI+LKMG YG +R +PL P + FA + +I++++ +LV++ Q Sbjct: 236 EAPAAGSAILAGILLKMGTYGFVRIAMPLLPAGWRQFALAFVGIGVISVVWGALVALAQN 295 Query: 298 DIKKLIAYSSIAHMGYVTIGI-FSGMKS---------GVEGAMFQMLSHGLVSSALFFCV 347 D+K++IAY+SI HMGYV + + +GM S GA++QM+SHGL+++ALF Sbjct: 296 DLKRMIAYTSINHMGYVLLALGAAGMVSADNEQARELATTGAVYQMVSHGLITAALFLLA 355 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 G ++ R HT + AY GL P +A + V A++GLPG SGFI EF ++ + Sbjct: 356 GALHTRGHTYTMSAYSGLATRTPHFAALFAVAAFASLGLPGFSGFIAEFQILAGALTATP 415 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV----QQLKDLSLRERCMVYPIAVLTV 463 V+A+ G++++A L +++ G + + DLS E + P+ L Sbjct: 416 VATVIAATGILITAALFLLAISRMLTGPVRTPDAPGTPRPFPDLSAPELLSITPLLALAT 475 Query: 464 FFGIYPVPIRD 474 G+ P P+ D Sbjct: 476 VLGLLPRPVLD 486 >gi|315248835|ref|YP_004072422.1| NADH dehydrogenase subunit 4 [Pichia angusta] gi|314911732|gb|ADT63569.1| NADH dehydrogenase subunit 4 [Pichia angusta] Length = 482 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 143/408 (35%), Positives = 234/408 (57%), Gaps = 12/408 (2%) Query: 67 YYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI 126 Y + I+ F S ++G D IS++ +LT +L I+S+W ++ +N ++M+ +L ++ Sbjct: 62 YINIIEIF-SINIGYDTISMIFFMLTLYLGIISIISNWVNMSKNMNQFMMLLTMLMLLMS 120 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM- 185 F+ LD++ FYI FE++L+P+F+IIG++GG+ + AAY +YT S+FM +I++M Sbjct: 121 MNFICLDLMSFYILFESTLMPLFLIIGIYGGNNKNKAAYYMLMYTLCSSLFMTLSIMLMY 180 Query: 186 CWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 C +D M+ +Q + + F +K P+ P HTWLP H ++P G Sbjct: 181 CVYND----VDYMTMNNKMMSMELQSLLIMGFMIGTGVKTPLVPIHTWLPLVHSESPLGG 236 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LAGI+LK+ YG IR LL + P+ + + +I IIY+SL+++ QTD+K +I Sbjct: 237 SILLAGIILKLAIYGIIRLLLSNISEVMLIYTPIFYVIGIITIIYSSLITLQQTDLKVII 296 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAY 362 AYSSI+H+ +GIFS G+ G+ ++H VS ALF V GV YDR H R ++ Y Sbjct: 297 AYSSISHLAVCILGIFSNNLLGLSGSTLLSIAHAFVSPALFLLVGGVTYDRYHNRILYYY 356 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL MP +++ ++F+ +N G P + FIGEF + N + LA+ ++ SA Sbjct: 357 QGLAQFMPMFSIYTILFSFSNSGTPLSFNFIGEFTSTSGIIINHKFIGFLATLSIMTSAS 416 Query: 423 YSLWLYRKVVFGV-SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Y + L K+ G+ S + DL RE ++ + + T+ FGI+P Sbjct: 417 YQMKLTNKLYAGIFSPYTTITY--DLIYREHFLLLMLFIPTLTFGIFP 462 >gi|168705480|ref|ZP_02737757.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain M [Gemmata obscuriglobus UQM 2246] Length = 625 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 120/270 (44%), Positives = 173/270 (64%), Gaps = 10/270 (3%) Query: 208 QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 QY +++ F FA+K+P+ P H+WLP+AH +APT S+ LAG++LK+GGYG +R P+ Sbjct: 334 QYLVFVLLFLGFAVKVPIVPLHSWLPDAHFEAPTPVSMILAGVLLKLGGYGLVRVAFPVC 393 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS--- 324 P A+ A I + +I I+Y +LV+M QTD KKL+AYSS++HMG+V +G+ S + Sbjct: 394 PWAASELAWWIGLIGVIGIVYGALVAMGQTDFKKLLAYSSVSHMGFVVLGLASWGSAANA 453 Query: 325 -----GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 GV GAMFQM++HG+ +SALFF VGV+YDR H RD+ +GGL MP YA + + Sbjct: 454 QYWQWGVSGAMFQMVAHGITASALFFIVGVVYDRAHHRDLNRFGGLKEPMPFYAGLSAIL 513 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 A+MGLPG GF+GEF V ++ + S +AV A VVL+A Y LW +++V G + Sbjct: 514 FFASMGLPGLCGFVGEFCVFLAAWNFSPGLAVPAVLSVVLTAAYLLWTWQRVYLGTNPAT 573 Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 K +L+ RE + P +L + GI P Sbjct: 574 K--DFPELTPREAVCLVPFVLLAIALGIAP 601 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/122 (46%), Positives = 82/122 (67%), Gaps = 2/122 (1%) Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 I WI F + LG DG+S+ LVVLT +T I++SWK I++ R Y+ L+LE+ Sbjct: 103 IARRAWIAPFNVQFALGADGLSLPLVVLTALVTLLAIVASWK-IEDGVRGYLALLLLLET 161 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 VIGAFL+LD LFY+ +E L+PM+V+IG+WGG+ R YAA KF +YT G + +L A++ Sbjct: 162 GVIGAFLALDFFLFYVSYELMLLPMYVLIGLWGGNNRKYAALKFVVYTLLGGVCLLVAMI 221 Query: 184 VM 185 + Sbjct: 222 AL 223 >gi|304407740|ref|ZP_07389391.1| proton-translocating NADH-quinone oxidoreductase, chain M [Paenibacillus curdlanolyticus YK9] gi|304343223|gb|EFM09066.1| proton-translocating NADH-quinone oxidoreductase, chain M [Paenibacillus curdlanolyticus YK9] Length = 541 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 173/538 (32%), Positives = 277/538 (51%), Gaps = 53/538 (9%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 P LS++ F P G V+L R A+ + + +L++++ FD R Sbjct: 7 PILSLIVFSPLAGAAVLLAMPKQRA--RLLRITAIIATLLPLALTLWLYADFDANRVGDS 64 Query: 64 MIEYYHWID----------------YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 EY W++ Y LG+DG+S+ LV+L T +T L+S +I Sbjct: 65 FEEYAAWVNIPLDQAGLGGGAASYGLHLDYRLGIDGLSLPLVLLATVITAMAALAS-VTI 123 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKF 167 ++ ++ Y I LVLE ++G FL+ D+ LF+IFFE +LIPM +IG+WG R AA +F Sbjct: 124 RKRWKAYYIWLLVLECGMLGVFLARDLFLFFIFFEITLIPMLFLIGIWGLFNREKAATRF 183 Query: 168 FLYTFFGSIFML--FAIVVMC--------------------WEKKTSSIIDLYAM----- 200 +Y GS ML FAIVVM +E +++ D A+ Sbjct: 184 LIYNGLGSAVMLIVFAIVVMTAGFSIGDTQGGGAVFSYSGSYETILANLSDPQAVVNQVA 243 Query: 201 --SKFPFSIQYWMWIAFFC----SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + PF + M A F +F IK+P+FPFH+W+ + H +AP + +GI+LKM Sbjct: 244 AGNVNPFYLSNGMETALFVLLLIAFGIKLPIFPFHSWMLSVHREAPAPVVMIHSGILLKM 303 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IRF LFP ++ FAP + L LI ++Y ++++ Q +++ ++AYSS++HMG V Sbjct: 304 GAYGLIRFGFFLFPEQAERFAPTLAVLGLINLLYGAVIAYRQQELRSMLAYSSLSHMGIV 363 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +G+ S G++GA+FQ++SHGL+S+ LF +G Y+R T I GGL P A Sbjct: 364 LLGLASLHVIGMQGAVFQLVSHGLISALLFLLIGSFYERTGTSRIDELGGLAKAAPFMAG 423 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ +A++GLPG SGF+GE L ++ +F + +A G++L+A Y L + FG Sbjct: 424 ALLAGGLASLGLPGLSGFVGELLALLGLFDTHKVIVSIALLGIILTAAYVLRAIMGITFG 483 Query: 435 VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTG 492 K +KD E + + + GIYP + + ++ + ++ G Sbjct: 484 -ELPAKYGSMKDARFIEALPIVVLLAFVLLLGIYPSFLTELMKHGFDPLLHHINMRVG 540 >gi|86152722|ref|ZP_01070927.1| nadh-quinone oxidoreductase chain m [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843607|gb|EAQ60817.1| nadh-quinone oxidoreductase chain m [Campylobacter jejuni subsp. jejuni HB93-13] Length = 495 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 154/457 (33%), Positives = 260/457 (56%), Gaps = 46/457 (10%) Query: 46 IFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 IF+ F+ V SF++++++ S+H+GVD I+++L++L++ I S+ Sbjct: 42 IFADFLQGVSFDYNLSFKILKFF-------SFHVGVDSIALVLMLLSSL----MIFLSFL 90 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 ++ + + LE ++G F + D LLFY+F+E SL+P+ I+GV+G R A Sbjct: 91 FLKLEQKALISCIFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFR--AGV 148 Query: 166 KFFLYTFFGSIFMLFAIV----------------VMCWEKKTSSIIDLYAMSKFPFSIQY 209 KFF+Y F GSI ML A++ + W+ S++ F+ Q Sbjct: 149 KFFIYAFAGSILMLVALIYQAYLNYQLLNIFTFDLEIWKNNASAV---------NFTEQL 199 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 ++ AFF +FAIK P+FP HTW P + +P SV L ++ KM +G + F LPLFP Sbjct: 200 LLFGAFFIAFAIKAPLFPLHTWAPKVYANSPILVSVML--VVFKMAPFGFLLFCLPLFPD 257 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 AS YF P+I L +++I+Y +L++ +IK+LIAYSSI+H+G + +GIFS G+ GA Sbjct: 258 ASVYFMPLIVALCIVSIVYNALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGA 317 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F M +HG+V+ ALF V ++Y R HT DI Y L P +++ M+ +A++ LP T Sbjct: 318 VFYMFAHGIVTGALFLMVELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLT 377 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 F+GEFL+++ + + + A+LA ++L A+Y ++RK+ F +K +++ SL Sbjct: 378 VSFVGEFLILLGIAKINLFYALLAGLVIILGAIYMFAVFRKIFF----MQKQSFIENFSL 433 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 R R +V + ++ + FG+ +P + P+ ++N Sbjct: 434 RFREIVALVCIVVMIFGLGLMP--NILLKPIQKDVDN 468 >gi|197107570|gb|ACH42365.1| NADH dehydrogenase subunit 4 [Colpomenia peregrina] Length = 220 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 120/223 (53%), Positives = 160/223 (71%), Gaps = 6/223 (2%) Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFF 168 + + Y+I+FL E ++I F +LD+L FYIFFEA LIPMF++IG++G +R I AAY FF Sbjct: 1 DIKTYLISFLSTELILILGFTNLDVLFFYIFFEAVLIPMFLVIGIYGSRQRKIRAAYMFF 60 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMF 226 LYT FGS+FML ++ + ++ + A+S FS Q W+W+AFF SFA K+PM Sbjct: 61 LYTLFGSLFMLIGVIYIYLFSGST---NFEALSTIGFSSYDQKWLWLAFFASFAAKVPML 117 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LFP AS YF P +F LSL+ + Sbjct: 118 PVHIWLPEAHVEAPTAGSVILAGILLKLGSYGFLRFSLGLFPEASVYFTPFVFSLSLLGV 177 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 +Y SL ++ QTD+K+LIAY+S+AHM V IG+F+G GVE A Sbjct: 178 VYTSLTAIRQTDLKRLIAYTSVAHMNLVMIGLFTGTVIGVEAA 220 >gi|329889076|ref|ZP_08267419.1| NADH-quinone oxidoreductase chain 13 [Brevundimonas diminuta ATCC 11568] gi|328844377|gb|EGF93941.1| NADH-quinone oxidoreductase chain 13 [Brevundimonas diminuta ATCC 11568] Length = 471 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 163/465 (35%), Positives = 248/465 (53%), Gaps = 47/465 (10%) Query: 31 RSFFGVALGISTINFIFSLFVWSVFDKGR--SSFQMIEYYHWIDYF-CSYHLGVDGISIL 87 R GV++ + + F+ +L +W+ +G F +E WI ++ +GVDG+S+ Sbjct: 12 RIAHGVSIATTGLTFVVTLAIWA---RGTLPDGFAQVEEIAWIPAIGAAFRVGVDGLSLP 68 Query: 88 LVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 L++LT+ L + + + I + ++ L+LE+ IG F +LD LLFY+FFE SL+ Sbjct: 69 LILLTSLLFFLSAIYAAR-ITDRPAVFVALMLMLETASIGTFAALDALLFYVFFEVSLVG 127 Query: 148 MFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 M+ +I WG ER A FF+YT GS+ +L AI I LY ++ F + Sbjct: 128 MYFMIVGWGYEERQRAGLMFFIYTLLGSLPLLLAI------------IGLY-LATGSFDM 174 Query: 208 QYWM-------------WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + W+ IA +FA+KIP FP HTWLP AHVQAPT GSV LAG+MLK Sbjct: 175 RLWIEAPPLTGLAAMLALIAMLFTFAVKIPSFPVHTWLPAAHVQAPTVGSVILAGVMLKF 234 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG +RF L + P A V+ + + +Y + V++ Q+D+KK+IAY+S+ HMGYV Sbjct: 235 GTYGLVRFALQMTPDAFAQAGQVVLAFGVFSALYGAFVALAQSDLKKMIAYTSVNHMGYV 294 Query: 315 TIGIFSGMKS--------GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 IG+ + + GA QM+SHG+V+ ALFF VG++ R H R++ A+GGL+ Sbjct: 295 VIGVAVAALTLDPDLRAVALNGATLQMVSHGIVTGALFFLVGMLQSRAHEREMTAFGGLL 354 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P ++ A++GLPG + F EF + ++ V VV + LY Sbjct: 355 GQVPWLGWAFVLSAFASLGLPGLAHFPAEFQIFLATLNAQPWAIVAIIAIVVTAGLY--- 411 Query: 427 LYRKV--VFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 R + VF + EK + DL E + P+ VL + G+ P Sbjct: 412 -LRAIAAVFLGERNEKWAAMPDLDRGEMLAIVPLLVLIILIGVAP 455 >gi|197107590|gb|ACH42375.1| NADH dehydrogenase subunit 4 [Padina pavonica] Length = 238 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 125/237 (52%), Positives = 168/237 (70%), Gaps = 6/237 (2%) Query: 97 PFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG 156 P C+L+SW S+ + + Y+++FL +E ++I F SLD++ FYIFFE LIPMF++IG+WG Sbjct: 4 PVCLLASWSSVTRSLKPYLLSFLGMELILILVFTSLDLIFFYIFFETILIPMFLVIGIWG 63 Query: 157 GSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWI 213 +R + AAY FF YT GS+ ML A+V M T+ A+S F FS Q W+W+ Sbjct: 64 SRQRKVRAAYLFFFYTLIGSLLMLVAVVYMYHIVGTTGY---EALSSFQFSEYDQRWLWL 120 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 AFF SFA K PM PFH WLP AHV+APT+GSV LAGI+LK+G YG +RF L LFP AS Y Sbjct: 121 AFFASFAAKAPMVPFHIWLPEAHVEAPTSGSVLLAGILLKLGSYGFLRFSLGLFPWASVY 180 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 + P +F LSL+ +IY SL ++ QTD+K+L+AY+S+AHM V IG+F+G GVE A+ Sbjct: 181 YTPFVFSLSLLGVIYTSLTAIRQTDLKRLVAYTSVAHMNLVVIGLFTGTVVGVEAAL 237 >gi|62736214|ref|YP_227573.1| NADH dehydrogenase subunit 4 [Candida orthopsilosis] gi|62177726|gb|AAX73018.1| NADH dehydrogenase subunit 4 [Candida orthopsilosis] Length = 479 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 149/416 (35%), Positives = 239/416 (57%), Gaps = 12/416 (2%) Query: 68 YHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 Y W + Y DGI+ + ++LT +L P I+++W SI+ Y + F L +++ Sbjct: 40 YDWNELDIYYT--TDGIADIFILLTAYLLPLSIIANWNSIKSTLY-YELVF-NLGIILLI 95 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F+ DML FYI+FEASL P+F++IG++G + R AA +YT S+FML AI V + Sbjct: 96 NFMCQDMLSFYIYFEASLAPLFILIGLYGANNREKAADYILIYTLLSSLFMLIAIAV--Y 153 Query: 188 EKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 E + D A+S S+ Q +++ +K P+ P HTWLP H ++P AGS+ Sbjct: 154 EVLIGNT-DYQAVSLLVLSLDLQCILFLGISIGIMVKTPLVPVHTWLPVVHSESPLAGSM 212 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LAG++LK+ Y IR +LP AS + PV++ + +I IIY S++++ QTD+K ++AY Sbjct: 213 LLAGVILKLAVYAIIRLILPTLSDASTLYTPVVYMVCIITIIYTSIITLRQTDLKVIVAY 272 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGG 364 SSI+HM +GI S G+ G++ ++HG VS ALF V G++YDR H R I+ Y G Sbjct: 273 SSISHMAVCILGIMSNNIIGISGSLILSIAHGFVSPALFIIVGGILYDRYHNRLIYYYQG 332 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L+ MP A+ +++ + N+G P + FIGE L + + LA V+LSA Y Sbjct: 333 LLTYMPILAIYLIILSFCNIGTPLSVNFIGELLSLAGALNRVPVLGALALISVLLSASYM 392 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD-TFSVP 479 L + ++ G+ K + D + RE ++ + + T+++G+YP I + +S+P Sbjct: 393 LKVTNRLTGGI-KTPYISLTHDCTFRESVLLISLIIPTIWYGLYPNGIANMIWSIP 447 >gi|305666188|ref|YP_003862475.1| NADH dehydrogenase I subunit M [Maribacter sp. HTCC2170] gi|88707686|gb|EAQ99927.1| NADH dehydrogenase I, chain M [Maribacter sp. HTCC2170] Length = 495 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 152/497 (30%), Positives = 268/497 (53%), Gaps = 17/497 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGR-RSFFG--VALGISTINFIFSLFVWSVFDKGR 59 + L++ +P L + ++F+ L R S G V LG++ IN +F F + Sbjct: 1 MDILTLFITVPILTIIALVFTKGLKQARIVSMIGSLVQLGMA-INLVFVYFKEKAVNNDI 59 Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119 F + + D+ Y++GVDGIS+ L++LT + + SWK + + +E+ ++ + Sbjct: 60 MVFTK-DVVWFKDFNIHYNIGVDGISVALLLLTAIVVLAGVFISWK-MNDLPKEFFVSLI 117 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VL V G F+SLD+ ++FFE ++IPM+++IG+WG + Y+A K L S +L Sbjct: 118 VLSIGVYGFFISLDLFTMFVFFEIAVIPMYLLIGIWGTGPKEYSAMKLTLMLMGASAVLL 177 Query: 180 FAIVVMCWEKK------TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 AI+ + + T +I+++ A P Q + F FA+ +FPFHTW P Sbjct: 178 VAILGIYFNSNADGGALTFNILEI-AKVNIPLEAQKLFFPLAFIGFAVIGALFPFHTWSP 236 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 + H APTA S+ AG+++K+GGYG R + L P + +++ L+ I +IY + + Sbjct: 237 DGHASAPTAVSMLHAGVLMKLGGYGVFRVAMYLLPEGAHHWSWFFIILATIGVIYGAFSA 296 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTD+K + AYSS++H+G V + K+ GA+ Q LSHG +++ F +G+IY R Sbjct: 297 IKQTDLKYINAYSSVSHLGMVLFALLMLNKTAWNGAILQSLSHGFMTALFFALIGMIYGR 356 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 HTRD+ GGL+ +P +V+ ++ +A++GLPG SGF+ E + + FQ+ + +A Sbjct: 357 THTRDVTKLGGLLKVIPFISVIYVIAGLASLGLPGFSGFVAEMNIFVGAFQHDDMFTRIA 416 Query: 414 SF----GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + +V++A+Y L + ++ G EK L+ ++ E+ + + + V G+ P Sbjct: 417 TIITVSAIVVTAVYILRVVGIMLMGPVTNEKYLTLERVTWYEKLGIMLLLIPIVGMGVAP 476 Query: 470 VPIRDTFSVPLSSIIEN 486 + + D L I+ Sbjct: 477 LWLSDMILDSLQPFIQG 493 >gi|27885395|gb|AAO26178.1| NADH dehydrogenase subunit 4 [Zaluzania megacephala] Length = 417 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 134/382 (35%), Positives = 220/382 (57%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPMALEIIFYIGFFIAFAVKXXXXXXXXXXXXXXXXX 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHAIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E LV + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQIFYG 391 >gi|229014459|ref|ZP_04171577.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus mycoides DSM 2048] gi|228746809|gb|EEL96694.1| NADH dehydrogenase I, subunit M (NADH-quinone oxidoreductase, chain M) [Bacillus mycoides DSM 2048] Length = 497 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 230/372 (61%), Gaps = 10/372 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y LG+DG+S+++++LT L ++++ SI+ N + + + L+LE ++G F + +++L Sbjct: 83 YELGIDGLSLVMMLLTALLAMLAAIAAF-SIKRNLKAFYMLLLMLEIGMLGVFAAQNLML 141 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 F++FFE +L PMF++IG WG AAY + +Y GS +L V+ + T++I + Sbjct: 142 FFMFFEITLPPMFLLIGKWGKLSSEKAAYSYLIYNGIGSAILLIVFSVLFAKTGTTNIAE 201 Query: 197 LYAM---------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 L + ++Q+ ++++ +FAIK+P+FP H W+ N H++A A + Sbjct: 202 LKEILTSVGAGGGMAVSSNLQFGLFLSIMIAFAIKLPVFPLHRWMVNVHIEAHPAVVMLH 261 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 AG++LK+G YG +RF LFP + FA +I L +I ++Y + ++++QTD +K++AYSS Sbjct: 262 AGVLLKIGAYGIVRFGKGLFPEYFREFATLIAILGVINLLYGAFLALIQTDFRKVLAYSS 321 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V +G+ + G +GA+FQ++SHGL+++ LFF +G+I +R T DI GGL Sbjct: 322 ISHMGIVLMGLAALNAPGTQGALFQVVSHGLIAALLFFLLGIIEERFGTSDITELGGLAK 381 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++P + + MA++G+PG SGFI EFL + +FQ +A G++L+A+Y L Sbjct: 382 SVPVLSGFFLAGGMASLGMPGMSGFISEFLAFLGLFQGKPVIAAAGVLGIILTAVYVLRA 441 Query: 428 YRKVVFGVSKCE 439 +V FG + E Sbjct: 442 ILQVTFGKKEWE 453 >gi|257077088|ref|ZP_05571449.1| NADH dehydrogenase subunit M [Ferroplasma acidarmanus fer1] Length = 498 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 153/459 (33%), Positives = 254/459 (55%), Gaps = 33/459 (7%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYH---------WIDYFCSYHLGVDGISI 86 V+LGI T+ FI ++S+FD + +I YY+ I ++ LG+ G S Sbjct: 30 VSLGILTVFFI----IYSIFDFRNYTGGVISYYNVLLTSFSTSGITININFSLGLTGFSD 85 Query: 87 LLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLI 146 LLV++ +T F IL KS F F+ + G F+ + L FYIF+E LI Sbjct: 86 LLVIIALLITMFSILMGSKSHGAYFYG---LFMAAGFGLAGLFMVRNFLFFYIFWEVVLI 142 Query: 147 PMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC--WEKKTS----SIIDLYAM 200 P+F IIG +G + ++ KFF+YT GS+F+L +I + + KTS I DL + Sbjct: 143 PVFFIIGKYGTGNKEKSSLKFFIYTHIGSLFLLLSIFTLSTYYFLKTSIFTFQIGDLMNV 202 Query: 201 S---KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 + P Y++ F +F IK+P FP H WLP+A+ AP +G++ L+G ++ MGGY Sbjct: 203 AFIIGIPTYAFYFILFGFLLAFLIKLPTFPLHVWLPDAYYDAPYSGTIMLSGGLVAMGGY 262 Query: 258 GCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 G + L P+ L +Y I FL LI+IIY + ++ Q D+K++ AY S A M ++TI Sbjct: 263 GLLGILYPIAGLFPKYLVYFIIFLGLISIIYFAFSALFQPDLKRMAAYGSAAEMSFITIA 322 Query: 318 IFSGMKS-------GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 + + S + G M+Q+++H V++ +F + ++Y R T I+ GGL +P Sbjct: 323 FGTALLSTGYVRTLDLAGGMYQIIAHTFVAALIFASLSLVYKRTGTSRIYELGGLNRELP 382 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + ++V +A++GLP +GFIGEF V +S FQ+ + G+++ A + +W ++ Sbjct: 383 ILSSFLLVGMLASLGLPSLAGFIGEFSVTISAFQSIGLYTLFIVLGLIVIAAFLIWAAQR 442 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +FG E++ +L+D++ +E +++ I V T+F G+YP Sbjct: 443 TIFGYFN-ERLGRLRDVNKQEFLILFFIMVCTIFLGVYP 480 >gi|325954446|ref|YP_004238106.1| proton-translocating NADH-quinone oxidoreductase, chain M [Weeksella virosa DSM 16922] gi|323437064|gb|ADX67528.1| proton-translocating NADH-quinone oxidoreductase, chain M [Weeksella virosa DSM 16922] Length = 472 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 148/441 (33%), Positives = 248/441 (56%), Gaps = 5/441 (1%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQ-MIEYYHWIDYFCSYHLGVDGISILLVVLTTF 94 V LG F+ +L + + G + Q E++++ Y L + L+V L+T Sbjct: 27 VWLGAVLSGFLLALMTFLFYRGGSNELQYTAEWFNFNQLKTYYALDATNLGGLMVFLSTL 86 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 + + S Q+ + L+ + + G FL+ D++LFY F+E LIP + +IG+ Sbjct: 87 VYSLLFIYLAASKQKYSNVFYGLMLITLAGLNGVFLAKDLILFYFFWELVLIPTYFLIGI 146 Query: 155 WG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII--DLYAMSKFPFSIQYWM 211 WG G +I A FFLYT FGS+ ML I+ + + + S + D+ A++ + + Sbjct: 147 WGKGYNKIMANMTFFLYTVFGSMLMLAGIIFIGFHLQPKSFLFYDVQAVTAQQYCATSLL 206 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 + F +F IKIP+FPFHTW P + +PT +V L+ +M KMG + +++ + LFP+AS Sbjct: 207 ALLFLIAFVIKIPIFPFHTWQPTIYKTSPTPVTVVLSALMAKMGLFAVVKWYIGLFPMAS 266 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 +Y P +LI I+YASL+++ ++KK+IAYSSIAH+ + + +F+ +G A F Sbjct: 267 EYL-PYFLIPALIGILYASLIALSTNNVKKIIAYSSIAHLALIFLSLFTNEPTGFTAAFF 325 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 QM SHGLV L+ V ++ R H ++ + G+ P A+ MVF MAN+GLP TS Sbjct: 326 QMFSHGLVVLGLWLIVDIMEKRYHVTNLKSLSGIATVNPTIAIFFMVFAMANIGLPLTSS 385 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 FIGEF+++ ++F+ + A++AS GV+LSA+Y+L + ++FG + + Sbjct: 386 FIGEFMMLSALFKYNMFWAIIASLGVILSAVYTLRMMSALMFGKTTYRYAGKHHTEKPGV 445 Query: 452 RCMVYPIAVLTVFFGIYPVPI 472 ++ I +L ++FG++P I Sbjct: 446 IIVLSLITILIIYFGVHPNAI 466 >gi|332708462|ref|ZP_08428437.1| NADH dehydrogenase subunit M [Lyngbya majuscula 3L] gi|332352726|gb|EGJ32291.1| NADH dehydrogenase subunit M [Lyngbya majuscula 3L] Length = 498 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 147/397 (37%), Positives = 224/397 (56%), Gaps = 8/397 (2%) Query: 45 FIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS 103 F++S+ + ++F+ G + Q E WI +Y LGVDG+S+ L++L LT + + Sbjct: 40 FLWSVILMTMFNPGDVNLQFQENLPWIQAIGLTYSLGVDGLSLPLLILNGLLTAIALYCT 99 Query: 104 WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYA 163 ++ R Y L+L V GAFL+ D+LLF+IF+E LIP++++I +WGG R YA Sbjct: 100 DSNVIRP-RLYYALMLLLNGAVAGAFLAQDLLLFFIFYELELIPLYLLIAIWGGKRRGYA 158 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSS---IIDLYAMSKFPFSIQYWMWIAFFCSFA 220 A KF LYT +L + + + + +SS S P + Q + A F Sbjct: 159 ATKFLLYTALSGALVLASFLGLVFLSGSSSFSYTETRELASLLPVAQQLILLGAVLIGFG 218 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 IKIP PFHTWLP+AHV+A T S+ LAG++LK+G YG +RF L LFP AP + Sbjct: 219 IKIPFVPFHTWLPDAHVEASTPVSILLAGVLLKLGTYGLLRFGLGLFPEPWTILAPWLGI 278 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 + ++ +Y + ++VQ D+KK++AYSS+AHM Y+ + + + + ++ QM+SHGL+S Sbjct: 279 WAAVSSLYGAFNAIVQKDMKKMVAYSSVAHMAYILLAAAAATELALVSSVLQMISHGLIS 338 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 + LF VG+IY + +RDI GL++ MP +M++ MA+ G+PG GFI EFL Sbjct: 339 ALLFLLVGIIYKKTGSRDITILNGLLNPERGMPVVGSLMVLGVMASAGIPGMVGFISEFL 398 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 V Q +L L+ +Y L L FG Sbjct: 399 VYWGSLQVLPIPTILCMLSTGLTVVYFLQLVGGAFFG 435 >gi|327309903|ref|YP_004336801.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pseudonocardia dioxanivorans CB1190] gi|326955238|gb|AEA28934.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pseudonocardia dioxanivorans CB1190] Length = 506 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 150/413 (36%), Positives = 238/413 (57%), Gaps = 20/413 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 SYHLGVDG+++ L+ +T L C + + + + + Y++ FL L+++ +G F +LD++ Sbjct: 75 SYHLGVDGLALPLLAMTAVLFLACGVFALRETRR-VKPYVLLFLALQTVSLGLFAALDLI 133 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIY-AAYKFFLYTFFGSIFML--FAIVVMCWEKKTS 192 LF++FF+ S++ M+ +I WG +ER AA KFFLYTF GS+ +L F +V + T Sbjct: 134 LFFLFFDLSIVFMYFVIAGWGHAERARSAALKFFLYTFLGSLALLLGFILVFLAATPHTF 193 Query: 193 SIIDLYAMSKFPFSIQY--WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 I++L A + Y +A A+K P PFHTWLP AH +AP GS LAG+ Sbjct: 194 DIVELAAANPLAAGGPYAALTLLAIGVGLAVKTPTVPFHTWLPPAHTEAPATGSAILAGV 253 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LKMG YG +R +PL P + + +A V+ + +++++Y +LV+ QT++K++IAY+SI H Sbjct: 254 LLKMGTYGFVRIAMPLLPTSWRQYALVVLIVGVVSVVYGALVAFAQTNLKRMIAYTSINH 313 Query: 311 MGYVTIGIFSG--MKSG--------VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 MGYV +GI + + +G GA+ QM+SHGL++ ALF GV+YDR HT ++ Sbjct: 314 MGYVLVGIGAAGIVAAGDAQARTLATTGALVQMVSHGLITGALFLLAGVLYDRGHTYELG 373 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 AY GL PR+A + V A++GLPG SGFI EF + + +A G++++ Sbjct: 374 AYSGLAARTPRFAALFAVAAFASLGLPGFSGFIAEFQIFTGSLPAAPIPVAIAVTGILVT 433 Query: 421 ALYSLWLYRKVVFGVSKCEKV----QQLKDLSLRERCMVYPIAVLTVFFGIYP 469 A L +++ G + + DL E + P+ L G+ P Sbjct: 434 AALFLVALQRLFLGPLRIPDAPGTPHAVSDLRTGELLAIVPLLSLATVIGLAP 486 >gi|53686302|ref|YP_097072.1| NADH dehydrogenase subunit 4 [Ambystoma laterale] gi|51979837|gb|AAU20509.1| NADH dehydrogenase subunit 4 [Ambystoma laterale] Length = 456 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 143/387 (36%), Positives = 222/387 (57%), Gaps = 16/387 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 LG+D IS L++LT +L P IL+S K ++ N R Y+ FL+L+ +I AF S ++ Sbjct: 56 LGLDFISSPLLILTCWLLPLMILASQKHLKGNPPTRQRMYLSMFLILQISLILAFTSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG SER+ A F YT GS+ +L A+V + + T S Sbjct: 116 ILFYIAFETTLIPTLIIITRWGNQSERLNAGTYFLFYTLAGSLPLLIALVAL--QNNTGS 173 Query: 194 IIDLYAMS--KFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + LY + K P+ Y ++W + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 L-SLYLLETMKPPYLFMYTNKFLWFSCLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L L P Y+ +I L+L +I SL+ M QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGIIRITLLLTPQKELYYPFMI--LALWGVIMTSLICMRQTDLKSLIAYSSV 290 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V + GA+ M+SHGL+SSALF + Y+R H+R + G+ Sbjct: 291 SHMGLVIAAAIIQTPWSLTGAVILMISHGLISSALFCLANMNYERSHSRTLLLVRGMQAI 350 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + ++ ++NM LP + GE +++S+F S + G +++A Y+L++Y Sbjct: 351 LPLMGMWWLMVNLSNMALPPSINLWGELTIMISLFNWSKWTILFTGLGTLITATYTLYMY 410 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + + + RE C++ Sbjct: 411 LMTQRGPAPTHLNKMAPNYT-REHCLM 436 >gi|12424|emb|CAA31558.1| ndhD gene product [Zea mays] gi|226550|prf||1601520C ndhD gene Length = 515 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 159/499 (31%), Positives = 264/499 (52%), Gaps = 15/499 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ +A I + F+ + + F Sbjct: 20 PWLTILVVLPIFAGSLIFFLPHKGNKIVRWYTIA--ICLLEFLLMTYAFCYHFQLEDPLI 77 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+D +S+ ++LT F+T L++W + N + + L + Sbjct: 78 QLKEDSKWIDVFDFHWRLGIDPLSLGSILLTGFITTLATLAAWP-VTRNSQLFYFLMLAM 136 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 137 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 196 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P +++ ++ F ++A+K+P+ P HTWLP H +A Sbjct: 197 VLGMGLYGSNEPGLDLERLINQSYPTTLEILLYFGFLIAYAVKLPIIPLHTWLPYTHGEA 256 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 257 HYSTCMLLAGILLKMGAYGLIRVNMELLPHAHYLFSPWLVIIGAVQIIYAASTSLGQRNF 316 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 317 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 376 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 377 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFMLMPKMLITFV 436 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE ++ I + + GIYP Sbjct: 437 MAIGMILTPIYLLSMLRQMFYGYKLFHVPNKNFVDSGPRELFLLICIFLPLIGIGIYPDL 496 Query: 472 IRDTFSVPLSSIIENYTLK 490 + + ++ NY K Sbjct: 497 VLSLSVDRVEVLLSNYYTK 515 >gi|207108466|ref|ZP_03242628.1| NADH dehydrogenase subunit M [Helicobacter pylori HPKX_438_CA4C1] Length = 401 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 221/367 (60%), Gaps = 12/367 (3%) Query: 52 WSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN 110 W FD + Q E + +YH+GVDGI++ L++L + +L S ++E Sbjct: 40 WHGFDIQTAGMQFEETKELVYQIGVNYHVGVDGIALFLLLLNAIV----VLLSVIYVKER 95 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 +++ I L+LE +++G F SL+++ FY F+E SL+P+ +IG +G + +IY+ KFFLY Sbjct: 96 RKDFAICLLLLEGILMGVFSSLNVIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLY 155 Query: 171 TFFGSIFMLFAIVVMCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 TF S+ ML I+ + + ++ I+D Y ++ F I+ W+++AF A+KIP Sbjct: 156 TFLASLCMLLGILYIGYYYASNYGMMSFDILDWYQLN-FSSEIKTWLFVAFLIGIAVKIP 214 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 +FP HTWLP A+ APT GSV L+ ++ KMG Y +RFLLPLFP S+ + I ++L Sbjct: 215 LFPLHTWLPYAYSNAPTLGSVMLSALLSKMGTYALLRFLLPLFPELSEIYLTPIAIVALC 274 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 IIY ++ Q D+K LIAYSS +HMG V +G+FS GV GA+F M +HG++ LF Sbjct: 275 MIIYGGFLAYAQKDLKTLIAYSSFSHMGVVVLGVFSFNVEGVSGAVFMMFAHGIIVMGLF 334 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G++ +R + +I +G + + P +A M+ MAN+G+P + GF+GEFL ++ F Sbjct: 335 LLAGILEERASSLEIARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVGEFLSLLGFFA 394 Query: 405 NSNTVAV 411 +A+ Sbjct: 395 TYPLLAI 401 >gi|114707864|ref|ZP_01440757.1| NADH dehydrogenase subunit 4 [Fulvimarina pelagi HTCC2506] gi|114536642|gb|EAU39773.1| NADH dehydrogenase subunit 4 [Fulvimarina pelagi HTCC2506] Length = 500 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 170/443 (38%), Positives = 252/443 (56%), Gaps = 27/443 (6%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSS--FQMIEYYHWIDYF-CSYHLGVDGISILLVVLT 92 VALG ST++F+ + VW FD G + FQ + WID ++ +GVDG+S L V L Sbjct: 30 VALGASTLSFLCLIIVWIGFDTGSEAPAFQSVAEVGWIDALGVAWRVGVDGMS-LAVSLM 88 Query: 93 TFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 + L C ++ + R+Y FL L+ + +G FLSLD+L+FY+FF+ +L+ M+ +I Sbjct: 89 SGLLFLCSIAWPAETKGRARQYYGWFLFLQGVSLGLFLSLDLLVFYVFFDLTLVGMYFLI 148 Query: 153 GVWGGSERIYAAYKFFLYTFFGSIFMLFAIV--VMCWEKKTSSIIDLYAMSKFPFSIQYW 210 G WG + YAA KFF+YT GS+ +L AI+ V+ T I +L A+ + Sbjct: 149 GRWGHDQAEYAALKFFVYTLAGSLAILLAILGLVLANGTLTFDIRELIAVQPLGGTDLRS 208 Query: 211 MWI--AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFP 268 I F FAIK P+ PFHTWLP AHV+AP S LAG++LKMG YG +R +P F Sbjct: 209 SLILFGFLVGFAIKTPLVPFHTWLPLAHVEAPGPASAVLAGVLLKMGTYGMVR--IP-FQ 265 Query: 269 LASQYFAPVIFFL---SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI-FSGMKS 324 + + FA F L +L+AI++ SLV++ QT++K+ IAY+S+ HMGY +GI +G Sbjct: 266 MMRETFAAYAFPLAIVALVAILWGSLVALAQTNLKRRIAYTSVNHMGYTVLGIAAAGAMI 325 Query: 325 GVE--------GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376 G E GA+ +M++HGL++ ALF G Y R T D+ +GGL P V Sbjct: 326 GSESVRTLALSGAVTEMVAHGLITGALFLIAGSFYTRAGTYDLSRFGGLARLTPLLMVAY 385 Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVS 436 + A+ GLPG +GF+ EF + F VA + G+V++A L + + + FG + Sbjct: 386 FLAAFASFGLPGLAGFVAEFQIFAGSFGVYPIVAAIGLLGLVITAALFLMMGQTIFFGET 445 Query: 437 KCEKVQQLKDLSLRERCMVYPIA 459 K E + +KDL E ++P+A Sbjct: 446 KPE-IAAIKDLKPAE---IWPLA 464 >gi|62736230|ref|YP_227558.1| NADH dehydrogenase subunit 4 [Candida metapsilosis] gi|62177742|gb|AAX73033.1| NADH dehydrogenase subunit 4 [Candida metapsilosis] gi|170779375|gb|ACB37039.1| NADH dehydrogenase subunit 4 [Candida metapsilosis] Length = 456 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 145/402 (36%), Positives = 235/402 (58%), Gaps = 10/402 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFF 141 DGI+ + ++LT +L P I+++W SI+ Y + F L +++ F+ DML FYI+F Sbjct: 52 DGIADIFILLTAYLLPLSIIANWNSIKSTLY-YELVF-NLGIILLINFMCQDMLSFYIYF 109 Query: 142 EASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS 201 EASL P+F++IG++G + R AA +YT S+FML AI V +E + D A+S Sbjct: 110 EASLAPLFILIGLYGANNREKAADYILIYTLLSSLFMLIAIAV--YEVLIGNT-DYQAVS 166 Query: 202 KFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 S+ Q +++ +K P+ P HTWLP H ++P AGS+ LAG++LK+ + Sbjct: 167 LLVLSLDLQCILFLGISIGIMVKTPLVPVHTWLPVVHSESPLAGSMLLAGVILKLAVFAI 226 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 IR +LP AS + PV++ + +I IIY S++++ QTD+K ++AYSSI+HM +GI Sbjct: 227 IRLILPTLSDASTLYTPVVYMICVITIIYTSIITLRQTDLKVIVAYSSISHMAVCILGIM 286 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 S G+ G++ ++HG VS ALF V G++YDR H R I+ Y GL+ MP A+ +++ Sbjct: 287 SNNIIGISGSLILSIAHGFVSPALFIIVGGILYDRYHNRLIYYYQGLLTYMPILAIYLII 346 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 + N+G P + FIGE L + + LA V+LSA Y L + ++ G+ K Sbjct: 347 LSFCNVGTPLSVNFIGELLSLAGALNRVPVLGALALISVLLSASYMLKVTNRLTGGI-KT 405 Query: 439 EKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD-TFSVP 479 + D + RE ++ + + T+++G+YP I + +S+P Sbjct: 406 PYISLTHDCTYRESVLLISLIIPTIWYGLYPNGIANMIWSIP 447 >gi|148925716|ref|ZP_01809404.1| NADH dehydrogenase I chain M [Campylobacter jejuni subsp. jejuni CG8486] gi|205355582|ref|ZP_03222352.1| NADH dehydrogenase I chain M [Campylobacter jejuni subsp. jejuni CG8421] gi|145845726|gb|EDK22817.1| NADH dehydrogenase I chain M [Campylobacter jejuni subsp. jejuni CG8486] gi|205346359|gb|EDZ32992.1| NADH dehydrogenase I chain M [Campylobacter jejuni subsp. jejuni CG8421] Length = 495 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 154/457 (33%), Positives = 259/457 (56%), Gaps = 46/457 (10%) Query: 46 IFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 IF+ F+ V SF++++++ S+H+GVD I+++L++L++ I S+ Sbjct: 42 IFADFLQGVSFDYNLSFKILKFF-------SFHVGVDSIALVLMLLSSL----MIFLSFL 90 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 ++ + + LE ++G F + D LLFY+F+E SL+P+ I+GV+G R A Sbjct: 91 FLKLEQKALISCIFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFR--AGV 148 Query: 166 KFFLYTFFGSIFMLFAIV----------------VMCWEKKTSSIIDLYAMSKFPFSIQY 209 KFF+Y F GSI ML A++ + W+ S++ F+ Q Sbjct: 149 KFFIYAFAGSILMLVALIYQAYLNYQLLNIFTFDLEIWKNNASAV---------NFTEQL 199 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 ++ AFF +FAIK P+FP HTW P + +P SV L ++ KM +G + F LPLFP Sbjct: 200 LLFGAFFIAFAIKAPLFPLHTWAPKVYANSPILVSVML--VVFKMAPFGFLLFCLPLFPD 257 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 AS YF P+I L +++I+Y +L++ +IK+LIAYSSI+H+G + +GIFS G+ GA Sbjct: 258 ASVYFMPLIVALCIVSIVYNALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGA 317 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 +F M +HG+V+ ALF V ++Y R HT DI Y L P +++ M+ +A++ LP T Sbjct: 318 VFYMFAHGIVTGALFLMVELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLT 377 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 F+GEFL+++ + + + A+LA ++L A+Y ++RK+ F +K ++ SL Sbjct: 378 VSFVGEFLILLGIAKINLFYALLAGLVIILGAIYMFAVFRKIFF----MQKQSFIEGFSL 433 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 R R +V + ++ + FG+ +P + P+ ++N Sbjct: 434 RFREIVALVCIVVMIFGLGLMP--NILLKPIQKDVDN 468 >gi|11467255|ref|NP_043087.1| NADH dehydrogenase subunit 4 [Zea mays] gi|1171814|sp|P11647|NU4C_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, chain 4; AltName: Full=NADH-plastoquinone oxidoreductase chain 4 gi|902285|emb|CAA60349.1| NADH dehydrogenase ND4 [Zea mays] Length = 500 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 159/499 (31%), Positives = 263/499 (52%), Gaps = 15/499 (3%) Query: 4 PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSV-FDKGRSSF 62 P+L+I+ LP +I F + G ++ +A I + F+ + + F Sbjct: 5 PWLTILVVLPIFAGSLIFFLPHKGNKIVRWYTIA--ICLLEFLLMTYAFCYHFQLEDPLI 62 Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q+ E WID F + LG+D +S+ ++LT F+T L++W + N + + L + Sbjct: 63 QLKEDSKWIDVFDFHWRLGIDPLSLGSILLTGFITTLATLAAWP-VTRNSQLFYFLMLAM 121 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG F S D+LLF+I +E LIP+++++ +WGG R+Y+A KF LYT GSIF L Sbjct: 122 YSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKRRLYSATKFILYTAGGSIFFLIG 181 Query: 182 IVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ M +DL + +P + + ++ F ++A+K+P+ P HTWLP H +A Sbjct: 182 VLGMGLYGSNEPGLDLERLINQSYPTTWEILLYFGFLIAYAVKLPIIPLHTWLPYTHGEA 241 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + + IIYA+ S+ Q + Sbjct: 242 HYSTCMLLAGILLKMGAYGLIRVNMELLPHAHYLFSPWLVIIGAVQIIYAASTSLGQRNF 301 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S G+ GA+ Q+LSHG + + LFF G DR+ + Sbjct: 302 KKRIAYSSVSHMGFIIIGIGSITNIGLNGAILQILSHGFIGATLFFLAGTACDRMRLVYL 361 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + Sbjct: 362 EELGGISIPMPKIFTMFSSFSMASLALPGMSGFVAELVVFFGLITSPKFMLMPKMLITFV 421 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCE-KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 + G++L+ +Y L + R++ +G + D RE ++ I + + GIYP Sbjct: 422 MAIGMILTPIYLLSMLRQMFYGYKLFHVPNKNFVDSGPRELFLLICIFLPVIGIGIYPDL 481 Query: 472 IRDTFSVPLSSIIENYTLK 490 + + ++ NY K Sbjct: 482 VLSLSVDRVEVLLSNYYTK 500 >gi|237869122|ref|YP_002907448.1| NADH dehydrogenase subunit 4 [Chitala lopis] gi|237648819|dbj|BAH58918.1| NADH dehydrogenase subunit 4 [Chitala lopis] Length = 460 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + HL D +S L+VLT +L P I++S I R Y+ + L++ +I AF + Sbjct: 54 NLHLATDQLSTPLLVLTCWLLPLMIIASQNHIYSEPVNRQRTYISLLISLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++V Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLVTQKNTG 173 Query: 191 TSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ +Y P ++ W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMLTMYYTQ--PLNLTMWADNIWWLGCLMAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL Q P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRIMMMLDPLTKQLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS+LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGALILMIAHGLVSSSLFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE +I S+F S ++ G +++A YSL+ Sbjct: 351 TILPLMATWWFIANLANLALPPLPNLMGELTIITSMFNWSYPTIIITGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L RE ++ Sbjct: 411 MFLTTQRGPTTMHTI-SLTPSHTREHLLM 438 >gi|254033623|ref|YP_003029832.1| NADH dehydrogenase subunit 4 [Dunaliella salina] gi|246880709|gb|ACS95022.1| NADH dehydrogenase subunit 4 [Dunaliella salina] Length = 483 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 156/454 (34%), Positives = 255/454 (56%), Gaps = 31/454 (6%) Query: 36 VALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL--GVDGISILLVVLTT 93 ++L ++ + +SL++W +++ +FQ I + I HL G+D + LV+LT+ Sbjct: 41 LSLAVAFVPLGWSLYLWILYNGSGPTFQCICHIPMI------HLTFGIDAAGLSLVILTS 94 Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 + P CI+ ++I ++ FL+LE +++G+ L LD+L FY+ FEASLI ++++I Sbjct: 95 AIFPLCIML-MRTISG-----ILTFLLLELVILGSLLVLDLLGFYLLFEASLILLYLLIA 148 Query: 154 -------------VWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM 200 G + AAYK LYT GS+ L I ++ +++++ L Sbjct: 149 RPERLTGTQYVKHSVGDYSTMDAAYKITLYTMVGSLLFLPVIFILYANYGSTNLLILTCS 208 Query: 201 SKFPFSIQYWMWIA--FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 S+ + + FA+KIP+ P WLP+AHV APTAGSV LAG++LK+GG G Sbjct: 209 DNPMLSVDKQLILGWGLLAVFAVKIPLIPLAVWLPHAHVAAPTAGSVLLAGVLLKLGGIG 268 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 IR+L+P+FP+ P I + LI+ ++++L ++ Q D+KK++AYSSIAHM VT+ I Sbjct: 269 IIRYLIPIFPVFVVKIFPFIAVMCLISFLFSTLTTLRQIDLKKIVAYSSIAHMSLVTLAI 328 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 FS + V + F M++HGLVS ALF VG +Y+R HT+ + GL +MP YA + + Sbjct: 329 FSLSEHSVASSTFMMVAHGLVSPALFLLVGFLYERSHTKYLPYLTGLGSHMPIYASLFFI 388 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 T+AN+ P FI E L ++S+F + A + VL A+Y W + +V+ G + Sbjct: 389 LTLANLSFPLFPNFIAEVLCLVSLFAVHSLYAYIFCISQVLGAVYGFWTFNRVMHGYNSN 448 Query: 439 EKVQQLK--DLSLRERCMVYPIAVLTVFFGIYPV 470 + DLS RE ++ P+ + + G+ P+ Sbjct: 449 TFTVKTSVVDLSRREVSLILPLLIGIFWLGLKPM 482 >gi|153952491|ref|YP_001398849.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. doylei 269.97] gi|152939937|gb|ABS44678.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 495 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 148/429 (34%), Positives = 246/429 (57%), Gaps = 39/429 (9%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLD 133 F S+H+GVD I+++L++L++ + S+ ++ + + LE ++G F + D Sbjct: 63 FFSFHVGVDSIALILMLLSSLMI----FLSFLFLKLEQKALVSCIFFLEFAIMGLFSAKD 118 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV---------- 183 LLFY+F+E SL+P+ I+GV+G R KFF+Y F GSI ML A++ Sbjct: 119 GLLFYVFWEFSLLPLLYIMGVYGKDFR--EGVKFFIYAFAGSILMLVALIYQAYLNYQLL 176 Query: 184 ------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 + W+ TS++ F+ Q ++ AFF +FAIK P+FP HTW P + Sbjct: 177 NIFTFDLEIWKNNTSAV---------NFTEQLLLFGAFFIAFAIKAPLFPLHTWAPKVYA 227 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +P SV L ++ KM +G + F LPLFP AS YF P+I L +++I+Y +L++ Sbjct: 228 NSPVLVSVML--VVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVYNALIAYKAE 285 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 +IK+LIAYSSI+H+G + +GIFS G+ GA+F M +HG+V+ ALF V ++Y R HT Sbjct: 286 NIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLMVELLYQRYHTY 345 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 DI Y L P +++ M+ +A++ LP T F+GEFL+++ + + + A+LA + Sbjct: 346 DISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAKINLFYALLAGLVI 405 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +L A+Y ++RK+ F +K ++ SLR R +V + ++ + FG+ +P + Sbjct: 406 ILGAIYIFAVFRKISF----MQKQSFIESFSLRLREIVALVCIVVMIFGLGLMP--NILL 459 Query: 478 VPLSSIIEN 486 P+ ++N Sbjct: 460 KPIQKDVDN 468 >gi|240266580|ref|YP_002970950.1| NADH dehydrogenase subunit 4 [Chalarodon madagascariensis] gi|239735240|dbj|BAH70456.1| NADH dehydrogenase subunit 4 [Chalarodon madagascariensis] Length = 460 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 207/359 (57%), Gaps = 12/359 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDM 134 L +D IS L +L+ +L P L+S +Q+ R+ +++ +L++++I F + ++ Sbjct: 57 LAMDQISAPLTILSCWLLPLMALASQNHLQQEPTHRKKIFLMTLAILQTLLILTFSTTNL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FE++LIP +II WG +ER+ A F YT S+ +L AI+ + K S Sbjct: 117 IMFYIMFESTLIPTLIIITRWGSQAERLTAGIYFLFYTLASSLPLLIAILHF-YTKNNHS 175 Query: 194 IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 +++ +++ P W WIA +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMNIMQLTQ-PHLTNSWSNSIFWIACLMAFMVKMPLYGTHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG IR LFP+ ++ + P + L+L I+ S + + QTD+K LIAYSS++ Sbjct: 235 ILLKLGGYGIIRISTILFPMTTKLYYPFML-LALWGIVMTSAICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG VT + GAM M++HGL SS LF Y+R H+R + GL + Sbjct: 294 HMGLVTTACLIQTPWSISGAMTLMIAHGLTSSMLFCLANTNYERTHSRTMILARGLHLVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ +ANM LP T IGE L+I SVF SN ++ G +L+A YSL ++ Sbjct: 354 PLMTTWWLLANLANMALPPTINLIGELLIITSVFNWSNITIIMTGLGTLLTATYSLHMF 412 >gi|45439421|ref|NP_990972.1| NADH dehydrogenase subunit 4 [Pterothrissus gissu] gi|45259658|dbj|BAD12308.1| NADH dehydrogenase subunit 4 [Pterothrissus gissu] Length = 460 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 219/389 (56%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLS 131 +++L D +S L+VLT +L P +L+S I EN + I LV L++ +I AF + Sbjct: 54 NHYLATDPLSTPLLVLTCWLLPLMMLASQNHISPEPENRQRVYITLLVSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M +K Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLMM--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P S+ W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLTIQYSQPMSLSSWGDKIWWVGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R+H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERIHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTILLTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPAP-NHIIALEPSHTREHLLI 438 >gi|315930442|gb|EFV09506.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni 305] Length = 495 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 161/502 (32%), Positives = 277/502 (55%), Gaps = 56/502 (11%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS----- 60 L+ + F P + FV+L R ++ +S + +L +++ F +G S Sbjct: 2 LNYLIFFPLIAAFVVLL-----LNRGGVKVFSVVVSFMILALNLDIFADFLQGASFDYNL 56 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 SF++++++ S H+GVD I+++L++L++ I S+ ++ + + Sbjct: 57 SFKILKFF-------SLHVGVDSIALVLMLLSSL----MIFLSFLFLKLKQKALVSCIFF 105 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE ++G F + D LLFY+F+E SL+P+ I+GV+G R A KFF+Y F GSI ML Sbjct: 106 LEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFR--AGVKFFIYAFAGSILMLV 163 Query: 181 AIV----------------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 A++ + W+ S++ F+ Q ++ AFF +FAIK P Sbjct: 164 ALIYQAYLNYQLLNIFTFDLEIWKNNASAV---------NFTEQLLLFGAFFIAFAIKAP 214 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 +FP HTW P + +P SV L ++ KM +G + F LPLFP AS YF P+I L ++ Sbjct: 215 LFPLHTWAPKVYANSPVLVSVML--VVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIV 272 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +I+Y +L++ +IK+LIAYSSI+H+G + +GIFS G+ GA+F M +HG+V+ LF Sbjct: 273 SIVYNALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGTLF 332 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 V ++Y R HT DI Y L P +++ M+ +A++ LP T F+GEFL+++ + + Sbjct: 333 LMVELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK 392 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + A+LA ++L A+Y ++RK+ F +K +++ SLR R +V + ++ + Sbjct: 393 INLFYALLAGLVIILGAIYMFAVFRKIFF----MQKQSFIENFSLRLREIVALVCIVVMI 448 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 FG+ +P + P+ ++N Sbjct: 449 FGLGLMP--NILLKPIQKDVDN 468 >gi|27885372|gb|AAO26167.1| NADH dehydrogenase subunit 4 [Tetragonotheca repanda] Length = 417 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 133/382 (34%), Positives = 220/382 (57%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKXXXXXXXXXXXXXXXXX 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L P A F+P + + I IIYA+ S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|291447002|ref|ZP_06586392.1| NADH dehydrogenase I chain M [Streptomyces roseosporus NRRL 15998] gi|291349949|gb|EFE76853.1| NADH dehydrogenase I chain M [Streptomyces roseosporus NRRL 15998] Length = 571 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 153/415 (36%), Positives = 231/415 (55%), Gaps = 31/415 (7%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMI 116 ++ Q WI HLG DGIS+ L+VLT LT C L S+ + + + ++ Sbjct: 72 ATMQATTDISWIPALDVRIHLGTDGISLPLLVLTALLTFLCALYSYFKLPAGPSPKAFVA 131 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LVLES + F LD+LLF++ FE LIPM+ +I WGG +R AA+KF LYT GS+ Sbjct: 132 LVLVLESGTLATFAVLDLLLFFLAFEMVLIPMYFLINRWGGDQRQAAAWKFILYTLLGSV 191 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 ML ++++ + T ++ L + S+Q +A A+K PM+P H+WLP+ Sbjct: 192 VMLLGLLLIGLKSGTFDMVALATDNGRGLTTSVQVIAVLAIGLGLAVKTPMWPLHSWLPD 251 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH APT GSV LAG++LKMG YG +R LLP+ P + FAP + +++ I+Y SL + Sbjct: 252 AHTAAPTVGSVLLAGVLLKMGTYGFVRILLPVAPDGMRTFAPYLAAFAVVGIVYGSLACL 311 Query: 295 ------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ LFF VG Sbjct: 312 ALARTGAKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGLLFFLVG 371 Query: 349 VIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 + DR T D+ G L PR ++ +A++GLPG +GF GE L + + Sbjct: 372 AVKDRYGTADLDTLAGATGAALYGRAPRLGALLAFAAVASLGLPGLAGFWGEMLTLFGAY 431 Query: 404 QNSNTVA--------VLASFGVVLSALYSLWLYRKVVFG-------VSKCEKVQQ 443 + ++ + +FG +L+A Y L + R+V G +S E+ QQ Sbjct: 432 SPAEGLSRPAFRTFMAIGAFGTLLTAAYMLIVVRRVCMGEHAPHSRLSPDEQSQQ 486 >gi|239735212|dbj|BAH70430.1| NADH dehydrogenase subunit 4 [Plica plica] Length = 460 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 140/363 (38%), Positives = 210/363 (57%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSW---KSIQENFRE-YMIAFLVLESMVIGAF 129 F + +L +D IS L+VL+ +L P I++S KS E+ ++ +MI L+ +I F Sbjct: 52 FVNKYLAIDDISAPLLVLSCWLLPLMIIASQNHLKSEPEHRKKIFMIITTTLQIFLILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S++++LFYI FEA+LIP +II WG +ER+ A F YT S+ +L AI+ M + Sbjct: 112 SSMNLVLFYIMFEATLIPTLIIITRWGNQAERLTAGIYFMFYTLTSSLPLLIAILYMNF- 170 Query: 189 KKTSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 K T+S + L M+++ Y +W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 KTTNSYLPLLMMNQYTMINSYSNTLLWTACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA I+LKMGGYG IR L P + + P + L+L I+ S + + QTD+K LIAY Sbjct: 231 VLAAILLKMGGYGIIRMSPMLMPATNALYYPFMI-LALWGIVMTSTICLRQTDLKALIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V + G M M++HGL SS+LF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVSACLIQTPWSLSGGMILMVAHGLTSSSLFCLANTNYERTHSRTLILTRGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ + NM LP T +GE L+I S+F S T +L G +++A+YSL Sbjct: 350 QLILPMMATWWLLANLTNMALPPTINLMGEILIISSMFNWSYTTILLTGLGTLITAMYSL 409 Query: 426 WLY 428 +Y Sbjct: 410 HMY 412 >gi|239943535|ref|ZP_04695472.1| putative NADH dehydrogenase chain M [Streptomyces roseosporus NRRL 15998] gi|239989989|ref|ZP_04710653.1| putative NADH dehydrogenase chain M [Streptomyces roseosporus NRRL 11379] Length = 573 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 153/415 (36%), Positives = 231/415 (55%), Gaps = 31/415 (7%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMI 116 ++ Q WI HLG DGIS+ L+VLT LT C L S+ + + + ++ Sbjct: 74 ATMQATTDISWIPALDVRIHLGTDGISLPLLVLTALLTFLCALYSYFKLPAGPSPKAFVA 133 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LVLES + F LD+LLF++ FE LIPM+ +I WGG +R AA+KF LYT GS+ Sbjct: 134 LVLVLESGTLATFAVLDLLLFFLAFEMVLIPMYFLINRWGGDQRQAAAWKFILYTLLGSV 193 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 ML ++++ + T ++ L + S+Q +A A+K PM+P H+WLP+ Sbjct: 194 VMLLGLLLIGLKSGTFDMVALATDNGRGLTTSVQVIAVLAIGLGLAVKTPMWPLHSWLPD 253 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH APT GSV LAG++LKMG YG +R LLP+ P + FAP + +++ I+Y SL + Sbjct: 254 AHTAAPTVGSVLLAGVLLKMGTYGFVRILLPVAPDGMRTFAPYLAAFAVVGIVYGSLACL 313 Query: 295 ------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL++ LFF VG Sbjct: 314 ALARTGAKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGLLFFLVG 373 Query: 349 VIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 + DR T D+ G L PR ++ +A++GLPG +GF GE L + + Sbjct: 374 AVKDRYGTADLDTLAGATGAALYGRAPRLGALLAFAAVASLGLPGLAGFWGEMLTLFGAY 433 Query: 404 QNSNTVA--------VLASFGVVLSALYSLWLYRKVVFG-------VSKCEKVQQ 443 + ++ + +FG +L+A Y L + R+V G +S E+ QQ Sbjct: 434 SPAEGLSRPAFRTFMAIGAFGTLLTAAYMLIVVRRVCMGEHAPHSRLSPDEQSQQ 488 >gi|255077725|gb|ACU00361.1| NADH dehydrogenase subunit 4 [Necturus beyeri] Length = 456 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 212/369 (57%), Gaps = 6/369 (1%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 +G+D IS L++LT +L P IL+S ++ N R Y+ ++L++ +I AF + +M Sbjct: 56 MGLDYISSPLLILTCWLFPLMILASKNHLKNNPMNRQRTYISMLVILQAFLILAFTATEM 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++++ + S Sbjct: 116 IMFYIAFEGTLIPTLIVITRWGNQAERLNAGTYFLFYTIAGSLPLLAALMILNNHFNSLS 175 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 +I L FS+ MW A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 176 LILLNTFYPMSFSLNMLMWAACLLAFLVKMPLYGMHLWLPKAHVEAPIAGSMILAAVLLK 235 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG IR L PL + P I +++ ++ L+ M QTD+K LIAYSS++HMG Sbjct: 236 LGGYGIIRITFLLAPLMKEMSYPFII-MAMWGVVMTGLICMRQTDLKSLIAYSSVSHMGL 294 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + GAM M+SHGL+SSALF + Y+R ++R + G +P A Sbjct: 295 VIAATLIQTPWSIMGAMALMISHGLISSALFCLANLNYERTNSRTLILVRGAQTILPLMA 354 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ + NM LP ++ GE +I+S+F SN ++ FG +++ +YSL+++ Sbjct: 355 TWWLLINLFNMALPPSTNLYGELTIIISMFNWSNWTILMTGFGTLITVMYSLYMFLMTQR 414 Query: 434 GVSKCEKVQ 442 G + ++ Sbjct: 415 GPTPHHLIK 423 >gi|537489|gb|AAA85105.1| NADH dehydrogenase subunit 4 [Synechocystis sp. PCC 6803] Length = 515 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 155/451 (34%), Positives = 245/451 (54%), Gaps = 31/451 (6%) Query: 2 NLPFLSIVTFLPFLG-VFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGR 59 + P+L+ + LP + +F+ L G R + ALG+ +F+ +V W+ +D Sbjct: 4 HFPWLTTMIALPLVAALFIPLIPDKDGKQVRWY---ALGVGLADFVLMSYVFWTNYDISS 60 Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118 + F + E + WI F S+ + VDGIS+ LV+L +T I ++W+ + Y + Sbjct: 61 TGFILQEKFSWIPQFGLSWSVSVDGISMPLVLLAGLVTTLSIFAAWQVTSKPRLFYFLMV 120 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFM 178 L+ + ++ +LL I +E L+P+++++ WGG +R YAA KF LYT S+F+ Sbjct: 121 LLYSAQIVLIVAQDRLLLLSIMWELELVPVYLLVVSWGGQKRQYAAMKFLLYTAAASVFI 180 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF-FCSFAIKIPMFPFHTWLPNAHV 237 L A + + T+ I + +P +++ +++ +FA+KI FPFHTWLP+AH Sbjct: 181 LVAPGLSFYGDVTTFDIAELGLKDYPIALELFLYTGLALVAFAVKISHFPFHTWLPDAHG 240 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 +A S+ LAG++LKMGGYG IR L L A YFAP++ L ++ IIY S Q Sbjct: 241 EASAPVSMILAGVLLKMGGYGLIRLNLGLLEDAHVYFAPILVILGVVNIIYGGFSSFAQA 300 Query: 298 DIKKLIAYSSIAHMGYV------TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC-VGVI 350 K+ +AYSS++HMG+V TIGI + QMLSHGL++ LFF GV Sbjct: 301 H-KRRLAYSSVSHMGFVLLLFSITIGIMDHL---------QMLSHGLIARVLFFPWTGVT 350 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS---- 406 YDR +T + G + MP + + MA++ LPG SGF+ E V + V + Sbjct: 351 YDRTNTLSLAQMGNIGKVMPTVFALFPMGAMASLALPGMSGFVSELAVFVGVSSSDIYST 410 Query: 407 --NTVAV-LASFGVVLSALYSLWLYRKVVFG 434 TV V LA+ G+VL+ +Y L + R++ +G Sbjct: 411 PFKTVTVFLAAVGLVLTPIYLLSMLRQLFYG 441 >gi|284042627|ref|YP_003392967.1| proton-translocating NADH-quinone oxidoreductase, chain M [Conexibacter woesei DSM 14684] gi|283946848|gb|ADB49592.1| proton-translocating NADH-quinone oxidoreductase, chain M [Conexibacter woesei DSM 14684] Length = 512 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 135/428 (31%), Positives = 246/428 (57%), Gaps = 17/428 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 F G+ Q + WI +Y LGVDG+++LL++L TFL I + + S++E R Sbjct: 47 FKTGQDGLQFVTDEAWISELGITYKLGVDGLNVLLLLLATFLF--AIAAIFASLREWERP 104 Query: 114 --YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE---RIYAAYKFF 168 + F V E+ V+GAF++ D++LF FF+ LIP + + G+WG + R+ K Sbjct: 105 GLFFFWFGVAETAVLGAFVAQDLILFVAFFDLMLIPFYFLTGIWGSGDHETRVRGTQKLV 164 Query: 169 LYTFFGSIFMLFAI----VVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIK 222 +YT GS+ ML A V+ + T + A+ + P S Q W+++ F +F +K Sbjct: 165 IYTLVGSLLMLVAAIATGVLASQQHDTELTFSISALQQLPLSDGSQDWIFLCFAAAFLVK 224 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +P FP H WLP+ + P +G++ K+ YG +R +LP+FP AS +F ++ ++ Sbjct: 225 MPAFPLHGWLPDGYKAMPLPALAVFSGVLSKVAAYGFLRIVLPVFPDASVHFQELLLLIA 284 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 L +I+Y S+++ +++ ++AYSS+A MG++T+GIF+ + G +GA+ QM++HGLV++ Sbjct: 285 LASILYGSVMAFSAQNVRLVVAYSSVAQMGFITLGIFALNEDGAQGALLQMVNHGLVTAP 344 Query: 343 LFFCVGVIYDRL-HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 LFF V ++ R + ++ GG+ P A + ++ ++A + +PG++ F+GEFL+++ Sbjct: 345 LFFIVALLAARAGGSEEMKDMGGIAFRAPVLATLFLIVSLATLAMPGSANFVGEFLILLG 404 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 VF+ A AS GV L+A+Y L + K + ++ ++++ R+ ++ P ++ Sbjct: 405 VFEAKPAFAFFASIGVALAAVYMLRAFIKAMH--NRVNPSTDSREVTFRDLAVLVPSVIV 462 Query: 462 TVFFGIYP 469 + +YP Sbjct: 463 IIALALYP 470 >gi|71906208|ref|YP_283795.1| proton-translocating NADH-quinone oxidoreductase, chain M [Dechloromonas aromatica RCB] gi|71845829|gb|AAZ45325.1| NADH dehydrogenase subunit M [Dechloromonas aromatica RCB] Length = 485 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 136/421 (32%), Positives = 231/421 (54%), Gaps = 7/421 (1%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 ++ + FQ++E WI Y LG+DGI++L + T L +++SW ++ + R Sbjct: 50 YEPSGARFQLVERVSWIASLNVHYLLGIDGIAVLFLPATALLFLGSLVASWNAVHDAPRL 109 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTF 172 + L+L++ +G F +LD LF++F+E +L+P++ ++G WG + R AA ++FL Sbjct: 110 HYSLLLLLQTANLGIFCALDTALFFVFWELTLVPLYFLLGRWGVTTGRAAAATRYFLIML 169 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 G I +L A V++ + + DL A+ + P S Q +++ F +K+P+ P HT Sbjct: 170 AGGIPLLLAFVILAVSQSVPTF-DLMALLAAPLPRSTQTAVFLLCLIGFGVKVPLVPLHT 228 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP + AP + + L G LK+G +G IRF +PL P A+ ++ L +AI+Y + Sbjct: 229 WLPQFSLAAPGSLTALLVG--LKLGAFGLIRFAVPLAPDAALDMHWLLAGLGTVAILYGA 286 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + + Q++++ +AY+SI H+G +G+ S G +GA+ +LS + + F + + Sbjct: 287 VGMLAQSNLRVGLAYASICHVGLAVLGLASYTAQGAQGAVSLLLSFSVATGGAFILLEFL 346 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 R + DI A GG MP A ++ +A +G+PGTS F GEFL+I++ + Sbjct: 347 RQRTGSTDIHALGGAAKTMPLLATGFLICGLAGVGMPGTSSFPGEFLLIIAALHSHTGAG 406 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 + A FG+ ++A L LYRK FG + E V Q DL RE ++ + V+ GIYP Sbjct: 407 MAALFGLSIAAGGFLALYRKAFFGPVERESVAQATDLRPREWAVLVALIVMIAGIGIYPG 466 Query: 471 P 471 P Sbjct: 467 P 467 >gi|57238580|ref|YP_179711.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni RM1221] gi|57167384|gb|AAW36163.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni RM1221] gi|315059017|gb|ADT73346.1| NADH-ubiquinone oxidoreductase chain M [Campylobacter jejuni subsp. jejuni S3] Length = 495 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 148/427 (34%), Positives = 246/427 (57%), Gaps = 35/427 (8%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLD 133 F S+H+GVD I+++L++L++ I S+ ++ + + LE ++G F + D Sbjct: 63 FFSFHVGVDSIALVLMLLSSL----MIFLSFLFLKLEQKALISCIFFLEFAIMGLFSAKD 118 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 LLFYIF+E SL+P+ I+GV+G R A KFF+Y F GSI ML A++ + Sbjct: 119 GLLFYIFWEFSLLPLLYIMGVYGKDFR--AGVKFFIYAFAGSILMLVALIYQAY------ 170 Query: 194 IIDLYAMSKFPFSIQYW--------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ ++ F F ++ W ++ AFF +FAIK P+FP HTW P + + Sbjct: 171 -LNYQLLNIFTFDLEIWKNNASAANFTEQLLLFGAFFIAFAIKAPLFPLHTWAPKVYANS 229 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P SV L ++ KM +G + F LPLFP AS YF P+I L +++I+Y +L++ +I Sbjct: 230 PILVSVML--VVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVYNALIAYRAENI 287 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+LIAYSSI+H+G + +GIFS G+ GA+F M +HG+V+ LF V ++Y R HT DI Sbjct: 288 KELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGTLFLMVELLYQRYHTYDI 347 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 Y L P +++ M+ +A++ LP T F+GEFL+++ + + + A+LA ++L Sbjct: 348 SFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAKINLFYALLAGLVIIL 407 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 A+Y ++RK+ F +K ++ SLR R +V + ++ + FG+ +P + P Sbjct: 408 GAIYMFAVFRKIFF----MQKQSFIEGFSLRFREIVALVCIVVMIFGLGLMP--NILLKP 461 Query: 480 LSSIIEN 486 + ++N Sbjct: 462 IQKDVDN 468 >gi|299829043|ref|YP_003734933.1| NADH dehydrogenase subunit 4 [Callorhinchus milii] gi|298110883|gb|ADI57836.1| NADH dehydrogenase subunit 4 [Callorhinchus milii] Length = 458 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 207/364 (56%), Gaps = 13/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + +GVD +S L++LT +L P +L+S ++ R Y+I + L+ +I AF Sbjct: 52 FTNGFMGVDPLSSPLMILTCWLLPLMLLASQNHLKTEPINRQRIYIIMLITLQVSLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S++M++FYI FE +LIP ++I WG ER+ A F YT GS+ +L A++ M Sbjct: 112 SSMEMIMFYIMFETTLIPTLILITRWGNQKERLNAGIYFLFYTLAGSLPLLIALLTM--- 168 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + + L + P + W W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 169 QNYMHSLSLMIIPFSPNQMNNWANILWWTACLIAFLVKMPLYGVHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R ++ L PL Y P I L++ ++ A + + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRIIITLNPLTKDYSYPFII-LAIWGVVMAGSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG VT I GAM M+SHGL+SSALF Y+R+H+R + G Sbjct: 288 YSSVSHMGLVTAAILIQTPWSFMGAMVLMISHGLISSALFCLANTNYERIHSRTLLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P A + +AN+ LP ++ +GE ++I S+F S +L FG +++ YS Sbjct: 348 TQTILPLMASWWFLTNLANLALPPSTNLLGELMIITSLFSWSMWTLILTGFGTLITVCYS 407 Query: 425 LWLY 428 L+L+ Sbjct: 408 LYLF 411 >gi|291298466|ref|YP_003509744.1| proton-translocating NADH-quinone oxidoreductase chain M [Stackebrandtia nassauensis DSM 44728] gi|290567686|gb|ADD40651.1| proton-translocating NADH-quinone oxidoreductase, chain M [Stackebrandtia nassauensis DSM 44728] Length = 493 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 157/414 (37%), Positives = 237/414 (57%), Gaps = 10/414 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIA--FLVLESMVIGAFLSLDM 134 + LGVDG+S L+VLT LT C + + E R +++ LV+ + +IG F + ++ Sbjct: 73 FDLGVDGVSYPLIVLTALLTLLCCVHTLLYEPERGRGGVLSALLLVVAAGIIGVFTAANL 132 Query: 135 LLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 + F++FFE L+PM+ II WGG +R +AA KF LYT GS+ +L I V+ T + Sbjct: 133 VAFFVFFELVLLPMWAIIHWWGGPKRQHAALKFALYTLLGSLLLLAGIFVVGGTSGTGDL 192 Query: 195 IDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + L A +K P Q + FA+K P++P HTWLP+AH +APT GSV LAG++L Sbjct: 193 VALTEGAAAKLPAGTQLLAFALLTLGFAVKAPLWPLHTWLPDAHTEAPTVGSVILAGVLL 252 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 KMG YG +R L + P + APV+ L++ AI+ LV + QT++K+LIAYSS+ HMG Sbjct: 253 KMGTYGMVRVSLGVAPDGAAQAAPVLGVLAVAAILIGGLVCLAQTELKRLIAYSSVGHMG 312 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 +V +GI +G SG+ A++ ++HGL++ LFF G + DR H+ ++ GGL + P Sbjct: 313 FVVLGIATGTASGINAALYGNIAHGLITGLLFFLAGAVKDRTHSGELARLGGLRNVAPGL 372 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL----ASFGVVLSALYSLWLY 428 A V+ +A++GLPG +GF GE + + + ++ A+ G L+A+Y L L Sbjct: 373 AGVLGFTALASLGLPGLAGFWGEAFAVYGSVTAAKPLWIVLAVLAACGAALAAVYLLRLL 432 Query: 429 RKVVFGVSK--CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 R V G S + L E + PI V FG+ P + DTF+ PL Sbjct: 433 RLVTHGPSSPFIAGLGPAAALKRGEIAVWAPIIAGIVVFGLAPWLLLDTFASPL 486 >gi|27544892|ref|NP_775406.1| NADH dehydrogenase subunit 4 [Lecanicillium muscarium] gi|27450724|gb|AAO14666.1|AF487277_11 NADH dehydrogenase subunit 4 [Lecanicillium muscarium] Length = 492 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 150/485 (30%), Positives = 259/485 (53%), Gaps = 21/485 (4%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS + +P +G ++ SS S +AL S IN I SL ++ +F+ + FQ I Sbjct: 20 LSSLLTIPLIGTIIV--SSLDSYKNTSIKSIALITSIINLILSLVIFILFNSSTNQFQYI 77 Query: 66 EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125 + +H + F Y LGVDGISI ++LTT + P ++S +++ + Y ++++ +++ Sbjct: 78 QEHHNVQLFDIY-LGVDGISIYFILLTTIIMPIGLISIRVQLKKIVKSYFSYYVIIRTLL 136 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM 185 + F+ LD+ IF ++ + ++IG++G ++ A+ +++ IV+ Sbjct: 137 LAVFIGLDVNSLSIFSSKRILLLIILIGIFGSDNKVIASTYIYIH-----------IVIF 185 Query: 186 CWEKKTSSI----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 ++ SS D F ++ Q ++ F +FA+K P + WL AHV++P Sbjct: 186 IYQYSISSYGSTDFDTLFKLNFEYTTQVFLIYGIFIAFAVKTPTIFLNNWLLKAHVESPL 245 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GS+ LA I+LK+ YG R +LP+ P AS + VI+ + ++ TDIK+ Sbjct: 246 GGSIVLAAIVLKLSLYGIFRLILPILPKASLVYTFVIYTIVSGNCGCVLETALRTTDIKE 305 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG-VIYDRLHTRDIF 360 LIAYSS+ H IG+FS G+EG++ LSHG VSS LF C G V+YDR TR IF Sbjct: 306 LIAYSSVCHAAVYLIGVFSNTIQGLEGSIILGLSHGFVSSGLFICAGGVLYDRTGTRSIF 365 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 Y G+ MP +A++ + + N G P T FIGEF+ + + + + V A +V S Sbjct: 366 FYRGVAQLMPIFAILFFLLALGNCGAPLTLNFIGEFMSLYGIIERLPVLGVFACSSIVFS 425 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 A Y+++++ + FG S +++ + D++ RE +++ + T+ GIYP I + Sbjct: 426 AAYTIYMFNR-TFGGSFTRFLEESVYDVNKREFILLFILVAFTIVLGIYPSIILNVLDYS 484 Query: 480 LSSII 484 ++++I Sbjct: 485 MNNLI 489 >gi|296099594|gb|ADG95201.1| NADH dehydrogenase subunit 4 [Polypterus endlicherii congicus] Length = 459 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 139/379 (36%), Positives = 216/379 (56%), Gaps = 8/379 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D IS L+VLT +L P I++S I R Y+ + L++++I AF + ++ Sbjct: 57 MATDMISTPLIVLTCWLLPLMIIASQNHISTEPINRQRSYITLLVSLQALLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLYLYSTAGSLS 176 Query: 194 IIDLYAMSKFPFSIQY-WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++ + M +P S + ++W A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MLSMNPMIIYPNSWAHSFLWAACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG IR + L P A++ A L+L II + M Q+D+K LIAYSS++HMG Sbjct: 237 KLGGYGMIRMTIMLEP-ATKSLAYPFIILALWGIIMTGSICMRQSDMKSLIAYSSVSHMG 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V GI G GA+ M++HGL SSALF Y+R H+R + G+ MP Sbjct: 296 LVASGILIQTSWGFTGAIILMIAHGLTSSALFCLANTTYERTHSRTLLLARGMQIIMPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ANM LP +GE ++++S+F SN +L FG +++A YSL+LY Sbjct: 356 ATWWFTMSLANMALPPLPNLMGELMIMVSMFNWSNWTILLTGFGTLITASYSLYLYMSSQ 415 Query: 433 FGVSKCEKVQQLKDLSLRE 451 G + + + ++ RE Sbjct: 416 RGPTP-DNLSSMEPSHTRE 433 >gi|138896924|ref|YP_001127377.1| NADH dehydrogenase subunit M [Geobacillus thermodenitrificans NG80-2] gi|134268437|gb|ABO68632.1| NADH-quinone oxidoreductase chain M [Geobacillus thermodenitrificans NG80-2] Length = 523 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 159/523 (30%), Positives = 271/523 (51%), Gaps = 46/523 (8%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 + FLS++ F P LG+ ++ F + G A + + + +LF + G Sbjct: 1 MSFLSLLVFSPLLGIILLAFVRRTDTKTIQWLGTAATVPPL--LLALFAFIRSGSGFRLE 58 Query: 63 QMIEYYHWID-----------YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 Q+ E Y W+ Y Y LG+DG+S+L +VLT L ++S I+ Sbjct: 59 QLDESYDWVRLANLPFFTDAAYVIRYELGIDGLSLLFIVLTAVLGTLAAVASLL-IKVEK 117 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 + Y + L LE ++G F + + + F++F E +L+ MF+++G WGG ER AAY + LY Sbjct: 118 KGYFMWLLALEIGMLGVFAAANFIWFFLFLEVTLVAMFLLVGKWGGFERERAAYGYLLYN 177 Query: 172 FFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS-----------IQYWMWIAFFCSFA 220 GS +L I V+ T++ L+ P + +YW+ +FA Sbjct: 178 GLGSALLLVVIAVLVARTGTANFALLHETLHNPVAEGQLIAPLTAEARYWLLGGLLLAFA 237 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P P H WL HV+AP + AG++LK+ YG IRF + LFP + FA I Sbjct: 238 VKLPAVPLHRWLVRVHVEAPPPVVMLHAGVLLKIATYGMIRFGIGLFPDEFRAFAGAIAV 297 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 L +I I+Y +L+++ Q ++K ++AYSS++HMG V +G+ + ++G++GA+FQ ++HGL++ Sbjct: 298 LGVINILYGALLALRQRELKHVLAYSSVSHMGVVLVGLGALNEAGIQGAVFQSVAHGLIA 357 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 + F VGV+ +R+ T DI GGL MP ++ ++ +A +GLPG +GF+GE + Sbjct: 358 ALSFLLVGVLANRIGTTDIHRLGGLAKAMPIFSGYLLTAALALLGLPGLAGFVGELTAFL 417 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC--EKVQQLK------------- 445 +F+ +A + G++ +A+YSL + FG ++ E L+ Sbjct: 418 GLFETKPALAAAGALGLIFAAVYSLRAILDITFGHTRERYESTLGLRGAKESAASVSEPR 477 Query: 446 --DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 DL +E + + L V G+YP + PL++++E Sbjct: 478 VIDLQAKEAVPAFVLVALIVAVGVYP----QLLAEPLATVLET 516 >gi|217331616|gb|ACK38337.1| NADH dehydrogenase subunit 4 [Pseudohynobius flavomaculatus] Length = 459 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 214/366 (58%), Gaps = 16/366 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAF 129 + +LG+D +S L++LT +L P IL+S ++ N R Y+ ++L+ +I AF Sbjct: 51 LVNKYLGLDPLSSPLLILTCWLLPMMILASQNHLKNNTENRQRLYITMMIILQMSLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M+LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 111 AATEMILFYITFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSMPLLVALLIL--- 167 Query: 189 KKTSSIIDLYAMS-KFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + TS + ++ M P FS + W W+A +F +K+P++ H WLP AHV+AP A Sbjct: 168 QNTSGSLSIFLMELTCPMQLSMFSDKIW-WMACLLAFMVKMPLYGVHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L PL+ + P I L+L +I ++ M QTD+K L Sbjct: 227 GSMILAAVLLKLGGYGILRISIMLTPLSKELSYPFII-LALWGVIMTGMICMRQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V GA+ M+SHGLVSSALF + Y+R H+R + Sbjct: 286 IAYSSVSHMGLVISAALIQTPWSFSGAIILMISHGLVSSALFCLANMNYERTHSRTLLLM 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G +P A ++ ++NM LP + GE +++S+F SN ++ G +++A Sbjct: 346 RGAQTMLPLTATWWLLINLSNMALPPSLNLWGELTIMVSLFNWSNWTMLITGLGTLITAS 405 Query: 423 YSLWLY 428 Y+L+++ Sbjct: 406 YTLYMF 411 >gi|288909131|dbj|BAI77361.1| NADH dehydrogenase subunit 4 [Halieutaea stellata] Length = 460 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 142/388 (36%), Positives = 217/388 (55%), Gaps = 13/388 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FREYMIAFLVLESMVIG--AFLSLD 133 HL VD +S L++LT +L P IL+S + R+ M L++ + AF + + Sbjct: 56 HLAVDPLSAPLIMLTCWLLPLMILASQNHMASEPISRQRMFLTLLILLQFLLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++ FY+ FEA+LIP +I WG ER+ A F +YT S+ +L A++++ + T Sbjct: 116 LISFYVTFEATLIPTLALITRWGAQKERLNAGTYFLMYTLITSLPLLVALLIL--QNTTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ L P ++ W W F +F +K+PM+ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSPLTLSYSTPLTMTTWGDKLWWAGFLLAFLVKLPMYGTHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L L PL + P I LS+ I+ S + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGLIRILTVLEPLTQELSYPFII-LSVWGIVMTSAACLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V G+FS G+ GA M++HGL SSALF + Y+R H R + GL Sbjct: 293 SHMGLVMGGVFSQSSWGLAGATILMIAHGLTSSALFCLANIQYERTHNRTLVLARGLQSA 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 MP ++ T+AN+GLP F+GE L I ++++ S +L G V++A YS++++ Sbjct: 353 MPLLTTFWLIATLANLGLPPLPNFLGEILSITALYEWSCYSLILTGAGTVITAAYSIYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVY 456 G S + + L+ ++ RE ++Y Sbjct: 413 TMTQRG-SIPDHLMALEPVTAREYLLIY 439 >gi|239997575|gb|ACS37088.1| NADH dehydrogenase subunit 4 [Grandisonia alternans] Length = 458 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 215/388 (55%), Gaps = 8/388 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAF 129 F + L D ++ L++LT +LTP I++S + + R Y+ F++L++ +I AF Sbjct: 51 FINKWLATDQLATPLMILTCWLTPMMIIASQNHMANYSNNHQRMYITTFILLQTTLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 111 SSTELILFYIMFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLLGSLPLLIALLSLQNT 170 Query: 189 KKTSSIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S+++L P W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 171 MGSLSMLNLQFFQLINPTQTNNIWWTACLIAFMVKMPLYGLHLWLPKAHVEAPIAGSMIL 230 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L P +Y P + LSL II S + M QTD+K LIAYSS Sbjct: 231 AAVLLKLGGYGIMRVSILLTPFTKEYIYPFLI-LSLWGIIMTSSICMRQTDLKSLIAYSS 289 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V G GAM M++HGL SS LF Y+R H R + GL Sbjct: 290 VSHMALVISATLIQTPWGFTGAMILMIAHGLTSSMLFCLANTNYERTHNRTLLLTRGLQT 349 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A+ ++ + NM LP ++ +GE +I ++F SN +L GV+L+ALYSL + Sbjct: 350 ILPLMAMWWLMSNLTNMALPPSTNLMGELTIISTLFNWSNMTIMLTGTGVILTALYSLHM 409 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G+++ + + + RE ++ Sbjct: 410 FLMTQRGLTQ-KHINSITPSYTREHLLM 436 >gi|49616756|ref|YP_044748.1| NADH dehydrogenase subunit 4 [Sceloporus occidentalis] gi|49256926|dbj|BAD24733.1| NADH dehydrogenase subunit 4 [Sceloporus occidentalis] Length = 460 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 202/361 (55%), Gaps = 12/361 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + HL +D IS L+ L+ +L P +L+S ++ R +++ +L++++I F Sbjct: 52 FSTPHLMIDPISAPLLTLSCWLLPLMVLASQNHLKSEPLHRKRVFLMTLAILQTLLILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 ++++ LFYI FEA+L+P +II WG +ER+ A F YT S+ +L AI+ + Sbjct: 112 TAMNLTLFYIMFEATLVPTLIIITRWGNQAERLTAGTYFLFYTLASSLPLLVAILYFNTK 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 SSII L P W MW A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 NHHSSIILLQLTQ--PQLTNTWSNMFMWAACLLAFMVKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L P+ + + P + L+L I+ S + M QTD+K LIA Sbjct: 230 MVLAAILLKLGGYGIMRITMTLTPMTPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GAM M++HGL SS LF Y+R HTR + G Sbjct: 289 YSSVSHMGLVIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P + ++ + NM LP + +GE L+I+S+F SN +L G +++A+YS Sbjct: 349 FQILLPLMSTWWLLANLTNMALPPSINLMGELLIIISLFNWSNPTILLTGLGTLITAMYS 408 Query: 425 L 425 L Sbjct: 409 L 409 >gi|196249741|ref|ZP_03148437.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacillus sp. G11MC16] gi|196210617|gb|EDY05380.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacillus sp. G11MC16] Length = 523 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 159/523 (30%), Positives = 271/523 (51%), Gaps = 46/523 (8%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 + FLS++ F P LG+ ++ F + G A + + + +LF + G Sbjct: 1 MSFLSLLVFSPLLGIILLAFVRRTDTKTIQWLGTAATVPPL--LLALFAFIRSGSGFRLE 58 Query: 63 QMIEYYHWID-----------YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF 111 Q+ E Y W+ Y Y LG+DG+S+L +VLT L ++S I+ Sbjct: 59 QLDESYDWVRLANLPFFTDAAYVIRYELGIDGLSLLFIVLTAVLGTLAAVASLL-IKVEK 117 Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 + Y + L LE ++G F + + + F++F E +L+ MF+++G WGG ER AAY + LY Sbjct: 118 KGYFMWLLALEIGMLGVFAAANFIWFFLFLEVTLVAMFLLVGKWGGFERERAAYGYLLYN 177 Query: 172 FFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS-----------IQYWMWIAFFCSFA 220 GS +L I V+ T++ L+ P + +YW+ +FA Sbjct: 178 GLGSALLLVVIAVLVARTGTANFALLHETLHNPVAEGQLIAPLTAEARYWLLGGLLLAFA 237 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P P H WL HV+AP + AG++LK+ YG IRF + LFP + FA I Sbjct: 238 VKLPAVPLHRWLVRVHVEAPPPVVMLHAGVLLKIATYGMIRFGIGLFPDEFRAFAGAIAV 297 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 L +I I+Y +L+++ Q ++K ++AYSS++HMG V +G+ + ++G++GA+FQ ++HGL++ Sbjct: 298 LGVINILYGALLALRQRELKHVLAYSSVSHMGVVLVGLGAFNEAGIQGAVFQSVAHGLIA 357 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 + F VGV+ +R+ T DI GGL MP ++ ++ +A +GLPG +GF+GE + Sbjct: 358 ALSFLLVGVLANRIGTTDIHRLGGLAKAMPIFSGYLLTAALALLGLPGLAGFVGELTAFL 417 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC--EKVQQLK------------- 445 +F+ +A + G++ +A+YSL + FG ++ E L+ Sbjct: 418 GLFETKPALAAAGALGLIFAAVYSLRAILDITFGHTRERYESTLGLRGSKESAASVSEPR 477 Query: 446 --DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 DL +E + + L V G+YP + PL++++E Sbjct: 478 VIDLQAKEAVPAFVLVALIVAVGVYP----QLLAEPLATVLET 516 >gi|62161206|ref|YP_214819.1| NADH dehydrogenase subunit 4 [Ambystoma californiense] gi|49066316|gb|AAT49258.1| NADH dehydrogenase subunit 4 [Ambystoma californiense] Length = 458 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 141/385 (36%), Positives = 224/385 (58%), Gaps = 12/385 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 LG+D IS L++LT +L P IL+S K ++EN R Y+ F++L++ +I AF S ++ Sbjct: 56 LGLDFISSPLLILTCWLLPLMILASQKHLKENPPTRQRMYISMFIMLQTSLILAFTSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG SER+ A F YT GS+ +L A++ + + S Sbjct: 116 ILFYIAFETTLIPTLIIITRWGNQSERLNAGTYFLFYTLAGSLPLLIALLALQNNLGSLS 175 Query: 194 IIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L M K P+ Y ++W + +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 LYLLETM-KPPYLFMYTNKFLWFSCLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L P Y+ +I L+L +I SL+ M QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGIIRITMLLTPQKELYYPFMI--LALWGVIMTSLICMRQTDLKSLIAYSSVSH 292 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V + GA+ M+SHGL+SSALF + YDR H+R + G+ +P Sbjct: 293 MGLVISAAIIQTPWSLTGAVILMISHGLISSALFCLANMNYDRSHSRTLLLVRGMQAILP 352 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + ++ ++NM LP + GE +++S+F S + G +++A Y+L++Y+ Sbjct: 353 VMGMWWLMVNLSNMALPPSINLWGELTIMISLFNWSKWTILFTGLGTLITATYTLYMYQM 412 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G + + ++ +RE C++ Sbjct: 413 TQCGPTPAH-LNKMTPNYIREHCLM 436 >gi|16117420|ref|NP_395462.1| NADH dehydrogenase subunit 4 [Heterodontus francisci] gi|16030060|emb|CAC84221.1| NADH subunit 4 [Heterodontus francisci] Length = 460 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 141/394 (35%), Positives = 225/394 (57%), Gaps = 19/394 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + +LG+D +S L++LT +L P IL+S I R Y+ + L++ +I AF Sbjct: 52 FSNQYLGIDPLSAPLLILTCWLLPLMILASQNHISMEPITRQRTYITLLISLQTFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +++LFYI FEA+LIP ++I WG +ER+ A F YT FGS+ +L A+++M Sbjct: 112 SATELILFYIMFEATLIPTLIVITRWGNQTERLNAGTYFLFYTLFGSLPLLIALLLMQNN 171 Query: 189 KKTSSIIDLYAMSKFPFSI-------QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 T S+ L ++P S+ ++W WIA +F +K+P++ H WLP AHV+AP Sbjct: 172 LGTLSMTIL----QYPQSLNLSSWADKFW-WIACLTAFLVKMPLYGVHLWLPKAHVEAPI 226 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA ++LK+GGYG +R ++ L PL + P + L++ II S + + QTD+K Sbjct: 227 AGSMILAAVLLKLGGYGMMRIIVMLDPLTKEMAYPFMI-LAIWGIIMTSSICLRQTDLKS 285 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG V I GA M++HGL+SS+LF Y+R+H+R + Sbjct: 286 LIAYSSVSHMGLVAGAILIQTPWSFAGATTLMIAHGLISSSLFCLANTNYERIHSRTMLL 345 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 G+ +P A + +AN+ LP T +GE L+I S+F SN +L GV+++A Sbjct: 346 ARGIQIILPLMATWWFLTNLANLALPPTPNLMGELLIITSLFNWSNWTMILTGSGVLITA 405 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 YSL+++ G + + + + RE ++ Sbjct: 406 SYSLYMFLMTQRGPTS-QHLLSMTPTHTREHLLL 438 >gi|299829029|ref|YP_003734920.1| NADH dehydrogenase subunit 4 [Callorhinchus capensis] gi|298110869|gb|ADI57823.1| NADH dehydrogenase subunit 4 [Callorhinchus capensis] Length = 458 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 206/364 (56%), Gaps = 13/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + +GVD +S L++LT +L P +L S ++ R Y+I + L+ +I AF Sbjct: 52 FTNGFMGVDPLSSPLMILTCWLLPLMLLVSQNHLKTEPINRQRIYIIMLITLQVSLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S++M++FYI FE +LIP ++I WG ER+ A F YT GS+ +L A++ M Sbjct: 112 SSMEMIMFYIMFETTLIPTLILITRWGNQKERLNAGIYFLFYTLAGSLPLLIALLTM--- 168 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + + L + P + W W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 169 QNYMHSLSLMIIPFSPNQMNNWANILWWTACLIAFLVKMPLYGVHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R ++ L PL Y P I L++ ++ A + + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRIIITLNPLTKDYSYPFII-LAIWGVVMAGSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG VT I GAM M+SHGL+SSALF Y+R+H+R + G Sbjct: 288 YSSVSHMGLVTAAILIQTPWSFMGAMVLMISHGLISSALFCLANTNYERIHSRTLLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P A + +AN+ LP ++ +GE ++I S+F S +L FG +++ YS Sbjct: 348 TQTILPLMASWWFLTNLANLALPPSTNLLGELMIITSLFSWSMWTLILTGFGTLITVCYS 407 Query: 425 LWLY 428 L+L+ Sbjct: 408 LYLF 411 >gi|322422460|ref|YP_004221885.1| NADH dehydrogenase subunit 4 [Heterotis niloticus] gi|317176379|dbj|BAJ54203.1| NADH dehydrogenase subunit 4 [Heterotis niloticus] Length = 460 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 139/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 +++L D +S L+VLT +L P IL+S I R Y+ + L+ +I AF + Sbjct: 54 NHYLATDPLSTPLLVLTCWLLPLMILASQNHISLEPINRQRTYITLLISLQLFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP +II WG ++R+ A F YT GS+ +L A+++M +K Sbjct: 114 TEIILFYIMFEATLIPTLIIITRWGNQTKRLNAGTYFLFYTLAGSLPLLVALLIM--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLITQYVKPLDLTTWGNKIWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L P+ + P I L++ II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRITTMLDPITKELSYPFII-LAMWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVVGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLTRGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I+++F S +L G +++A YSL+ Sbjct: 351 TILPLMATWWFIANLANLALPPLPNLMGELIIIVAMFNWSYWTILLTGVGALITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G S V L+ RE ++ Sbjct: 411 MFLMTQHG-STTTHVMTLQPSHTREHLLM 438 >gi|258514499|ref|YP_003190721.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfotomaculum acetoxidans DSM 771] gi|257778204|gb|ACV62098.1| proton-translocating NADH-quinone oxidoreductase, chain M [Desulfotomaculum acetoxidans DSM 771] Length = 505 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 143/422 (33%), Positives = 244/422 (57%), Gaps = 16/422 (3%) Query: 43 INFIFSLFVWSVFDKGRSSFQMI-EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCI 100 ++ + S+ V+ +++ Q + WI D S++LGVDGIS+ +++LT + I Sbjct: 41 VSLVISVLVYFGYNQTLGGVQYVFRIQDWIKDLGVSFYLGVDGISLPMLLLTNLIGFSSI 100 Query: 101 LSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER 160 +SW SI++ +E+ I LVL + V+G F++ D+ +F +F+E +IP+++++ +WG ++R Sbjct: 101 FASW-SIKDRSKEFFILLLVLIAGVMGTFVAQDLFIFLLFYEVVVIPIYILVIIWGSTKR 159 Query: 161 I---YAAYKFFLYTFFGSIFMLF--------AIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 + YAA K +Y GS F+L +IV+ + + + + A PF Q Sbjct: 160 VTKEYAAMKLTIYLLIGSAFLLVGVIALFMKSIVITGAPDFSIAGLSMAAQQLSPFD-QI 218 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 W++ F I M+PFH+W P+ + APTA S+ AG++ K+GGYG I+ L P+ Sbjct: 219 WLFALMLFGFGSLISMWPFHSWSPDGYAGAPTAVSMIHAGVLKKIGGYGLIKIALFALPI 278 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 ++++AP I + + + YA++ ++ Q D+K ++ YSS++HMGYV +G+ S GV GA Sbjct: 279 GAKFWAPYIAIMGVAGVAYAAMGALAQKDLKYVVGYSSVSHMGYVLLGVASLNIIGVNGA 338 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 + M HG++++ F +G IY++ HTR I GGL PR AV M+ MA++GLPG Sbjct: 339 VANMFGHGVMAALFFSMIGFIYEKTHTRWIPDLGGLARQTPRLAVGFMMAAMASLGLPGL 398 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 FI EF + + F+ +AV+A G++++ALY L +FG + E L+D+ Sbjct: 399 VSFIPEFTIFVGSFKVFGGLAVIAIAGIIITALYVLRAGANTLFGPPRPE-YNHLQDIKG 457 Query: 450 RE 451 E Sbjct: 458 VE 459 >gi|283956939|ref|ZP_06374411.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283791440|gb|EFC30237.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 495 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 161/502 (32%), Positives = 276/502 (54%), Gaps = 56/502 (11%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS----- 60 L+ + F P + FV+L R ++ +S I +L +++ F +G S Sbjct: 2 LNYLIFFPLISAFVVLL-----LNRGGVKVFSVVVSFIILALNLDIFADFLQGASFDYNL 56 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 SF++++++ S+H+GVD I+++L++L++ I S+ ++ + + Sbjct: 57 SFKILKFF-------SFHVGVDSIALVLMLLSSL----MIFLSFLFLKLEQKALVSCIFF 105 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE ++G F + D LLFY+F+E SL+P+ I+GV+ R A KFF+Y F GSI ML Sbjct: 106 LEFSIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYSKDFR--AGVKFFIYAFAGSILMLV 163 Query: 181 AIV----------------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 A++ + W+ S++ F+ Q ++ AFF +FAIK P Sbjct: 164 ALIYQAYLNYQLLNIFTFDLEIWKNNASAV---------NFTEQLLLFGAFFIAFAIKAP 214 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 +FP HTW P + +P SV L ++ KM +G + F LPLFP AS YF P+I L ++ Sbjct: 215 LFPLHTWAPKVYANSPVLVSVML--VVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIV 272 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +I+Y +L++ +IK+LIAYSSI+H+G + +GIFS G+ GA+F M +HG+V+ LF Sbjct: 273 SIVYNALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGTLF 332 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 V ++Y R HT DI Y L P +++ M+ +A++ LP T F+GEFL+++ + + Sbjct: 333 LMVELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK 392 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + A+LA ++L A+Y ++RK+ F +K ++ SLR R +V + ++ + Sbjct: 393 INLFYALLAGLVIILGAIYMFAVFRKIFF----MQKQSFIEGFSLRFREIVALVCIVVMI 448 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 FG+ +P + P+ ++N Sbjct: 449 FGLGLMP--NILLKPIQKDVDN 468 >gi|86152278|ref|ZP_01070489.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85840767|gb|EAQ58018.1| NADH-quinone oxidoreductase, M subunit [Campylobacter jejuni subsp. jejuni 260.94] Length = 495 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 160/502 (31%), Positives = 276/502 (54%), Gaps = 56/502 (11%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS----- 60 L+ + F P + FV+L R ++ +S + +L +++ F +G S Sbjct: 2 LNYLIFFPLIAAFVVLL-----LNRGGVKVFSVVVSFMILALNLDIFADFLQGASFDYNL 56 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 SF++++++ S H+GVD I+++L++L++ I S+ ++ + + Sbjct: 57 SFKILKFF-------SLHVGVDSIALVLMLLSSL----MIFLSFLFLKLKQKALVSCIFF 105 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 LE ++G F + D LLFY+F+E SL+P+ I+GV+G R A KFF+Y F GSI ML Sbjct: 106 LEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFR--AGVKFFIYAFAGSILMLV 163 Query: 181 AIV----------------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 A++ + W+ S++ F+ Q ++ AFF +FAIK P Sbjct: 164 ALIYQAYLNYQLLNIFTFDLEIWKNNASAV---------NFTEQLLLFGAFFIAFAIKAP 214 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 +FP HTW P + +P SV L ++ KM +G + F LPLFP AS YF P+I L ++ Sbjct: 215 LFPLHTWAPKVYANSPVLVSVML--VVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIV 272 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +I+Y +L++ +IK+LIAYSSI+H+ + +GIFS G+ GA+F M +HG+V+ LF Sbjct: 273 SIVYNALIAYRAENIKELIAYSSISHLSVMILGIFSLNALGISGAVFYMFAHGIVTGTLF 332 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 V ++Y R HT DI Y L P +++ M+ +A++ LP T F+GEFL+++ + + Sbjct: 333 LMVELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK 392 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + A+LA ++L A+Y ++RK+ F +K +++ SLR R +V + ++ + Sbjct: 393 INLFYALLAGLVIILGAIYMFAVFRKIFF----MQKQSFIENFSLRLREIVALVCIVVMI 448 Query: 465 FGIYPVPIRDTFSVPLSSIIEN 486 FG+ +P + P+ ++N Sbjct: 449 FGLGLMP--NILLKPIQKDVDN 468 >gi|296099650|gb|ADG95253.1| NADH dehydrogenase subunit 4 [Polypterus sp. Koliba] Length = 459 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 135/356 (37%), Positives = 209/356 (58%), Gaps = 7/356 (1%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D IS L+VLT +L P IL+S I R Y+ + L++++I AF + ++ Sbjct: 57 MATDMISTPLIVLTCWLLPLMILASQNHISTEPINRQRTYITLLVSLQTLLIMAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 117 ILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLYLYNTAGSLS 176 Query: 194 IIDLYAMSKFPFSIQY-WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++ + ++ +P + + ++W A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MLSINLITIYPDNWAHTFLWTACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG IR + L P A++ A L+L II + M Q+D+K LIAYSS++HMG Sbjct: 237 KLGGYGMIRMTIMLEP-ATKSLAYPFIILALWGIIMTGSICMRQSDMKSLIAYSSVSHMG 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V GI G GA+ M++HGL SSALF Y+R H+R + G+ MP Sbjct: 296 LVASGILIQTSWGFTGAIILMIAHGLTSSALFCLANTTYERTHSRTLLLARGMQAAMPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++ANM LP +GE ++++S+F SN +L G +++A YSL+LY Sbjct: 356 ATWWFIMSLANMALPPLPNLMGELMIMISMFNWSNWTILLTGVGTLITASYSLYLY 411 >gi|237880842|ref|YP_002907500.1| NADH dehydrogenase subunit 4 [Xenomystus nigri] gi|237648889|dbj|BAH58983.1| NADH dehydrogenase subunit 4 [Xenomystus nigri] Length = 460 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S +VLT +L P IL+S R Y+ + L+ +I AF + Sbjct: 54 NLYLATDQLSTPFLVLTCWLLPLMILASQNHTSHQPMNQQRTYISLLISLQVFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M +K Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIM--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P S+ W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLIMQYTKPASLSSWADKIWWVGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG R + L PL Q P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMARIITVLDPLTKQLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G+ GA+ M++HGLVSSALF + Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANMNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE L+I ++F S ++ G +++A YSL+ Sbjct: 351 TALPLMATWWFITNLANLALPPLPNLMGELLIISTMFNWSYWTMLITGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + V L RE ++ Sbjct: 411 MFLMTQRGPAPTHTV-SLTPSHTREHLLI 438 >gi|299828988|ref|YP_003734882.1| NADH dehydrogenase subunit 4 [Callorhinchus callorynchus] gi|298110855|gb|ADI57810.1| NADH dehydrogenase subunit 4 [Callorhinchus callorynchus] Length = 458 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 133/364 (36%), Positives = 206/364 (56%), Gaps = 13/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +GVD +S L++LT +L P +L+S ++ R Y+I + L+ +I AF Sbjct: 52 FTNGFMGVDPLSSPLMILTCWLLPLMLLASQNHLKTEPIIRQRIYIIMLITLQVSLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S++M++FYI FE +LIP ++I WG ER+ A F YT GS+ +L A++ M Sbjct: 112 SSMEMIMFYIMFETTLIPTLILITRWGNQKERLNAGIYFLFYTLAGSLPLLIALLTM--- 168 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + + L + P + W W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 169 QNYMHSLSLMIIPFSPNQMNNWANILWWTACLIAFLVKMPLYGVHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R ++ L PL Y P I L++ ++ A + + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRIIITLNPLTKDYSYPFII-LAIWGVVMAGSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG VT I GAM M+SHGL+SSALF Y+R+H+R + G Sbjct: 288 YSSVSHMGLVTAAILIQTPWSFMGAMVLMISHGLISSALFCLANTNYERIHSRTLLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P + +AN+ LP ++ +GE ++I S+F S +L FG +++ YS Sbjct: 348 TQTILPLMTSWWFLTNLANLALPPSTNLLGELMIITSLFSWSMWTLILTGFGTLITVCYS 407 Query: 425 LWLY 428 L+L+ Sbjct: 408 LYLF 411 >gi|86609268|ref|YP_478030.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 4 family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557810|gb|ABD02767.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 502 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 168/436 (38%), Positives = 241/436 (55%), Gaps = 12/436 (2%) Query: 6 LSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS++ +P LG +I L G G +ALG + F S + +FD S Q+ Sbjct: 2 LSLLIGIPLLGSILIGLIPEQAGKGLHR--ALALGFGWVLFGLSAGLLLIFDPHLGSLQL 59 Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENFREYMIAFLVLE 122 E WI Y +GVDGIS+ LVV+T L +++ W S Q E R Y L+L Sbjct: 60 AERMAWIPQLGLVYEVGVDGISLPLVVMTGLL---VLMAIWASGQVERPRLYYSLVLMLA 116 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 + V GAFL+ ++LLF++F+E LIP++++I +WGG R YAA KF +YT I +L Sbjct: 117 AAVAGAFLAQNLLLFFLFYEVELIPLYLLIAIWGGPRRTYAATKFLVYTALSGILLLIGF 176 Query: 183 VVMCWEKKTSSII-DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + W S + P Q + I AIKIP+ PFHTWLP+AHV+A T Sbjct: 177 FGLSWLSDAHSFTYTVLQAHPLPRLSQILLLIPILLGLAIKIPLVPFHTWLPDAHVEAST 236 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 SV LAG++LK+G YG +RF L L P A P + +++ ++Y SL ++VQ D+KK Sbjct: 237 PISVLLAGLLLKLGTYGLVRFGLQLLPDAWDQAGPWLAGWAVVNVLYGSLNALVQQDMKK 296 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 L+AYSSIAHMGY+ + + + + G++FQM+SHGL+SS LF VG +Y TRD+ Sbjct: 297 LVAYSSIAHMGYILLAVAAATPLSLVGSVFQMVSHGLISSLLFLLVGAVYANTGTRDLKL 356 Query: 362 YGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 GL++ +P +M++ MA+ G PG GFI EF + F +L G Sbjct: 357 LRGLLNPERGLPLIGSLMVLGVMASGGTPGMVGFIAEFTLFRGSFAVFPLQTLLCMVGTG 416 Query: 419 LSALYSLWLYRKVVFG 434 L+A Y L + +V FG Sbjct: 417 LTAAYFLLMVNRVFFG 432 >gi|289183325|ref|YP_003457300.1| NADH dehydrogenase subunit 4 [Coelophrys brevicaudata] gi|288908809|dbj|BAI77062.1| NADH dehydrogenase subunit 4 [Coelophrys brevicaudata] Length = 460 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 147/391 (37%), Positives = 217/391 (55%), Gaps = 17/391 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK--SIQENFREYMIAFLVLESMVIGAFL--S 131 S +L VD +S L+VLT +L P IL+S S + R+ M L+ + + Sbjct: 54 SLYLAVDSVSAPLIVLTCWLLPLMILASQNHMSAEPLGRQRMFLSLLALLQFLLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP V+I WG ER+ A F LYT S+ +L A++++ + Sbjct: 114 TELIMFYVMFEATLIPTLVLITRWGTQKERLSAGTYFLLYTLLTSLPLLVALLIL---QN 170 Query: 191 TSSIIDLYAMSKFPF------SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + + L ++ P + + W W AF +F +K+PM+ H WLP AHV+AP AGS Sbjct: 171 ITGTLSLLTLNFNPLLLLSTHADKLW-WAAFLLAFLVKMPMYGTHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR LL L PL Q P LSL II S + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGLIRILLILEPLTQQLSYP-FMILSLWGIIMTSAACLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GIFS G+ GA M++HGL SSALF + Y+R H R + G Sbjct: 289 YSSVSHMGLVVGGIFSQSPWGLAGATALMIAHGLTSSALFCLANIQYERTHNRTLVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L MP ++ T+AN+GLP F+GE + I ++++ S ++ G VL+A YS Sbjct: 349 LQSAMPLLTTCWLIATLANLGLPPFPNFLGEIMAITALYEWSPYTLIMTGAGTVLTAAYS 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+L+ G E + L ++ RE ++ Sbjct: 409 LYLFLMSQRGPIP-EHLTALAPVTTREHLLM 438 >gi|307152740|ref|YP_003888124.1| proton-translocating NADH-quinone oxidoreductase subunit M [Cyanothece sp. PCC 7822] gi|306982968|gb|ADN14849.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7822] Length = 494 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 166/456 (36%), Positives = 245/456 (53%), Gaps = 14/456 (3%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRS---FFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LS ++PFL I F G ++ +A GI +N I FD Sbjct: 3 LSAFVWVPFLAAIAIAFLPMKVDGSQTRLITLVIAGGILLLNIILGF----QFDPTNLQS 58 Query: 63 QMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q E WI +YHLG+DG+S L+ + + LT I SS +S+ E R Y L+L Sbjct: 59 QFSENIPWISSLGLNYHLGIDGLSFPLLFINSLLTLIAIYSSSQSL-ERPRFYYALLLIL 117 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 V GAFL+ D+LLF++F+E +IP++ +I +WGG R YAA KF LYT I +L + Sbjct: 118 NGGVSGAFLAQDLLLFFLFYELEIIPLYFLIAIWGGQRRGYAAMKFLLYTALSGILVLVS 177 Query: 182 IVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + W SS + P Q + I IKIP+FPFHTWLP+AHV+A Sbjct: 178 FLGLVWLSGASSFDYEPLRSHTLPVETQIILLIPLLIGLGIKIPIFPFHTWLPDAHVEAS 237 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 T SV LAG++LK+G YG +RF + LF AP + L+ I+ +Y + ++ Q D+K Sbjct: 238 TPISVLLAGVLLKLGTYGLLRFGIGLFLEGWVAIAPWMATLAAISALYGASCAIAQKDMK 297 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 K++AYSSIAHM Y+ + + + + A++QM+SHGL+S+ LF VGV+Y + +RD+ Sbjct: 298 KVVAYSSIAHMAYILLAAAASTRLSILAAIYQMISHGLISAMLFLLVGVVYKKTGSRDVN 357 Query: 361 AYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 GL++ +P +M++ MA+ G+PG GFI EFLV F + G Sbjct: 358 YLQGLLNPERGLPVTGTLMILGVMASAGIPGMIGFIAEFLVFRGSFPIFPLQTLFCLIGS 417 Query: 418 VLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 L+A+Y L + +V FG E + +L + ER Sbjct: 418 GLTAVYFLLMVNRVFFGRLTAE-LSKLPRVLWSERT 452 >gi|296099552|gb|ADG95162.1| NADH dehydrogenase subunit 4 [Polypterus ansorgii] Length = 459 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 136/359 (37%), Positives = 205/359 (57%), Gaps = 13/359 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D IS L+VLT +L P IL+S I R Y+ + L++++I AF + ++ Sbjct: 57 MATDTISTPLIVLTCWLLPLMILASQNHISTEPINRQRTYITLLVSLQTLLIMAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T+ Sbjct: 117 ILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLTGSLPLLIALLYL---YNTAG 173 Query: 194 IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + + +M+ W +W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMLSMNLITIHPDNWAHTFLWAACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR + L P A++ A L+L II + M Q+D+K LIAYSS++ Sbjct: 234 VLLKLGGYGMIRMTIMLEP-ATKSLAYPFIILALWGIIMTGSICMRQSDMKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ M Sbjct: 293 HMGLVASGILIQTSWGFTGAIILMIAHGLTSSALFCLANTTYERTHSRTLLLARGMQVAM 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++ANM LP +GE ++++S+F SN +L G +++A YSL+LY Sbjct: 353 PLMATWWFIMSLANMALPPLPNLMGELMIMVSMFNWSNWTILLTGIGALITASYSLYLY 411 >gi|317176449|dbj|BAJ54268.1| NADH dehydrogenase subunit 4 [Xenomystus nigri] Length = 461 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S +VLT +L P IL+S R Y+ + L+ +I AF + Sbjct: 54 NLYLATDQLSTPFLVLTCWLLPLMILASQNHTSHQPMNQQRTYISLLISLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M +K Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIM--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P S+ W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLIMQYTKPASLSSWADKIWWVGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG R + L PL Q P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMARIITVLDPLTKQLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G+ GA+ M++HGLVSSALF + Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANMNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE L+I ++F S ++ G +++A YSL+ Sbjct: 351 TALPLMATWWFITNLANLALPPLPNLMGELLIISTMFNWSYWTMLITGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + V L RE ++ Sbjct: 411 MFLMTQRGPAPTHTV-SLTPSHTREHLLI 438 >gi|296099622|gb|ADG95227.1| NADH dehydrogenase subunit 4 [Polypterus endlicherii] Length = 459 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 136/356 (38%), Positives = 209/356 (58%), Gaps = 7/356 (1%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D IS L+VLT +L P IL+S I R Y+ + L++++I AF + ++ Sbjct: 57 MATDMISTPLIVLTCWLLPLMILASQNHISTEPINRQRAYITLLVSLQTLLIMAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 117 ILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLYLYNTAGSLS 176 Query: 194 IIDLYAMSKFPFSIQY-WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++ + +S +P + + ++W A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MLSINLISIYPDNWAHTFLWAACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG IR + L P A++ A L+L II + M Q+D+K LIAYSS++HMG Sbjct: 237 KLGGYGMIRMTIMLEP-ATKSLAYPFIILALWGIIMTGSICMRQSDMKSLIAYSSVSHMG 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V GI G GA+ M++HGL SSALF Y+R H+R + G+ MP Sbjct: 296 LVASGILIQTPWGFTGAIILMIAHGLTSSALFCLANTTYERTHSRTLLLARGMQVAMPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++ANM LP +GE ++++S+F SN +L G +++A YSL+LY Sbjct: 356 ATWWFIMSLANMALPPLPNLMGELMIMISMFNWSNWTIMLTGVGTLITASYSLYLY 411 >gi|67005589|gb|AAY62390.1| NADH dehydrogenase subunit 4 [Testudo hermanni] Length = 459 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 207/371 (55%), Gaps = 14/371 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F +++LGVD IS L++L+ +LTP IL+S + R +M + L+ +I AF Sbjct: 51 FSNHYLGVDRISAPLLILSCWLTPLMILASQNHLTLEPTSRKRTFMTTIIFLQISLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE +LIP VII WG ER+ A F YT GS+ +L A+ M Sbjct: 111 STTELIMFFITFETTLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSCM--- 167 Query: 189 KKTSSIIDLYAMS-KFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + +S + +Y M P W W+A +F IK+P++ H WLP AHV+AP AG Sbjct: 168 QAQNSTLSIYTMQLNQPTMTTSWAHSMWWLALLIAFMIKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG IR + L PL+ P + ++L +I S + + QTD+K LI Sbjct: 228 SMILAAVLLKLGGYGIIRITMTLNPLSKTLSYPFMV-MALWGVIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V + + GA+ M++HGL SS LF Y+R H+R +F Sbjct: 287 AYSSVSHMGLVIAATLTQTQWSHTGAITLMIAHGLTSSMLFCLANTNYERTHSRMLFLTR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 + +P + ++ ++ NM LP T +GE +I S+F SN ++ G +++A Y Sbjct: 347 NMQSLLPLMGLWWLLASLTNMALPPTINLMGELTIITSLFNWSNITILMTGLGTLITATY 406 Query: 424 SLWLYRKVVFG 434 +L++ +G Sbjct: 407 TLYMLVMTQWG 417 >gi|239997547|gb|ACS37062.1| NADH dehydrogenase subunit 4 [Epicrionops niger] Length = 458 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 205/370 (55%), Gaps = 14/370 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDML 135 +D +S L+VLT +L P IL+S + ++ R Y+ F+ L++ +I AF + +ML Sbjct: 57 NIDQLSSPLMVLTCWLLPLMILASQQHTLKDPLNRQRTYISMFIALQTSLILAFSATEML 116 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 LFYI FE +LIP +II WG +ER+ A F YT GS+ +L AI+ + + T S+ Sbjct: 117 LFYIMFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLLGSLPLLIAILSL--QNNTGSL 174 Query: 195 IDLY-----AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 I L + ++ Q W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 IMLTMQFHNQIHTTLYTNQIW-WFACLIAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG +R + L P P + LSL ++ S + + QTD+K LIAYSS++ Sbjct: 234 ILLKLGGYGIMRISILLTPFTKNAIYPFLI-LSLWGVVMTSSICLRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V + G+ GA+ M++HGL SS LF Y+R H+R + GL + Sbjct: 293 HMGLVAAALLIQTPWGLSGAIALMIAHGLTSSMLFCLANTNYERTHSRTMLLTRGLQSLL 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A+ ++ +ANM LP + +GE ++ + F SN +L G +++A YSL + Sbjct: 353 PLMAMWWLLSNLANMALPPSPNLMGELTILTTTFNWSNLTIILTGAGTLITATYSLHMLL 412 Query: 430 KVVFGVSKCE 439 G + Sbjct: 413 TTQHGQTPTH 422 >gi|14193055|ref|NP_115845.1| NADH dehydrogenase subunit 4 [Iguana iguana] gi|13751159|emb|CAC37092.1| NADH dehydrogenase subunit 4 [Iguana iguana] Length = 460 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 133/364 (36%), Positives = 204/364 (56%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV----LESMVIGAF 129 F + L VD IS L+VL+ +L P +L+S +Q+ AFL+ L++ +I F Sbjct: 52 FSNQLLAVDPISAPLLVLSCWLLPLMVLASQNHLQQEPLHRKQAFLITLSLLQTFLILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S ++ LFYI FEA+LIP ++I WG +ER+ A F YT S+ +L AI+ + Sbjct: 112 SSTNLTLFYIMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLASSLPLLIAILYLN-T 170 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 K + + L +++ P W +W+AF +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 KNYHTSMTLLQLAQ-PQLANTWSNTMLWVAFLMAFMVKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG IR L L P+ + + P + L+L I+ S + M QTD+K LIA Sbjct: 230 MVLAAILLKLGGYGIIRITLTLSPMTHKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG VT + GAM M++HGL SS LF Y+R HTR + G Sbjct: 289 YSSVSHMGLVTTACLIQTPWSITGAMTLMIAHGLTSSLLFCLANTNYERTHTRTLILARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P ++ + NM LP T +GE +++ ++ S +L G +++A+YS Sbjct: 349 FQTILPLMTSWWLLANLTNMALPPTINLMGELMIMSALLNWSTPTIILTGLGTLITAIYS 408 Query: 425 LWLY 428 L ++ Sbjct: 409 LHMF 412 >gi|261420752|ref|YP_003254434.1| NADH dehydrogenase subunit M [Geobacillus sp. Y412MC61] gi|319768422|ref|YP_004133923.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacillus sp. Y412MC52] gi|261377209|gb|ACX79952.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacillus sp. Y412MC61] gi|317113288|gb|ADU95780.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacillus sp. Y412MC52] Length = 525 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 157/523 (30%), Positives = 274/523 (52%), Gaps = 48/523 (9%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 FLS++ F P LG+ +++F + G A + + I +LF + +G ++ Sbjct: 3 FLSLLVFSPLLGIMLLMFVRKTDERMIQWLGTAATVPPL--ILALFAFIQSGRGFRLERL 60 Query: 65 IEYYHWID-----------YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 E W+ Y Y LG+DG+S++ +VLT L L+S ++ + Sbjct: 61 DEARDWVRLTDLPFLTDAAYVIRYELGIDGLSLVFIVLTAVLATLAALAS-MLVKTEKKG 119 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y + L LE ++G F + + + F++F E +L+ MF+++G WGG ER AAY + LY Sbjct: 120 YFLWLLALEIGMLGVFSAANFVWFFLFLEVTLVAMFLLVGKWGGFERERAAYSYLLYNGL 179 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI-----------QYWMWIAFFCSFAIK 222 GS +L I V+ T++ L+ M P + + W+ +FA+K Sbjct: 180 GSALLLVVIAVLLARTGTANFALLHEMLHNPAAEGQLIAPLTAEGRRWLLGGLLLAFAVK 239 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +P PFH WL HV+AP + AG++LK+ YG IRF + LFP + FA V+ Sbjct: 240 LPAVPFHRWLIRVHVEAPPPVVMLHAGVLLKIAAYGMIRFGVGLFPDEFRSFAGVLALFG 299 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 +I ++Y +L+++ Q ++K+++AYSS++HMG V IG+ + ++G++GA+FQ ++HGL+S+ Sbjct: 300 VINVLYGALLALRQRELKRVLAYSSVSHMGVVLIGLGALNEAGIQGAVFQSVAHGLISAL 359 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 F VGV+ R+ T DI +GGL MP ++ ++ +A +GLPG +GF+GEF + + Sbjct: 360 SFLLVGVLAHRMGTTDINRFGGLTKAMPLFSGYLLTAALALLGLPGLAGFVGEFTSFLGL 419 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK----------------- 445 FQ +A + + G++ +A+YSL + FG + ++ + Sbjct: 420 FQTKPALAAVGALGLIFAAVYSLKAVLDITFGRPRDQREAVMGWREPQASAASLGEPQGG 479 Query: 446 --DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 DL +E + + L V G+YP + PL+++++ Sbjct: 480 VVDLQGKEAVPAFILVALIVAVGVYP----QLLAAPLTAVVKT 518 >gi|288908823|dbj|BAI77075.1| NADH dehydrogenase subunit 4 [Zalieutes elater] Length = 460 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 140/386 (36%), Positives = 220/386 (56%), Gaps = 11/386 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L VD IS L+VLT +L P IL+S + R ++ + L+ ++I AF + + Sbjct: 56 YLAVDTISAPLIVLTCWLLPLMILASQNHMSSEPMSRQRIFLTLLVTLQFLLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG ER+ A F LYT S+ +L +++++ + Sbjct: 116 LIMFYVMFEATLIPTLMLITRWGTQKERLNAGSYFLLYTLVTSLPLLVSLLLLQNITGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + P + + W W F +F +K+PM+ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLNYTPQLPSMLWGDKLW-WAGFLLAFLVKMPMYGTHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR L+ L P P I LS+ I+ S + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGLIRILIILDPTTQNMSYPFII-LSVWGIVMTSAACLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GIFS G+ GA M++HGL SSALF + Y+R H R + GL M Sbjct: 294 HMGLVVGGIFSQTPWGLAGATALMIAHGLTSSALFCLANIQYERTHNRTMVLARGLQTTM 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P ++ T+AN+GLP F+GE + I ++++ S +L G V++A YSL+++ Sbjct: 354 PLLTSWWLLATLANLGLPPLPNFLGEIMAITALYEWSPYTLILTGAGTVITAAYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + + L+ ++ RE ++ Sbjct: 414 MSQRGPTP-KHLMTLEPVTTREHLLM 438 >gi|25057430|ref|NP_740227.1| NADH dehydrogenase subunit 4 [Polypterus senegalus senegalus] gi|25006460|dbj|BAC23954.1| NADH dehydrogenase subunit 4 [Polypterus senegalus senegalus] Length = 458 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 137/359 (38%), Positives = 208/359 (57%), Gaps = 7/359 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 +Y + D IS L+VLT +L P IL+S I R Y+ + L++++I AF + Sbjct: 54 NYMMATDMISTPLIVLTCWLLPLMILASQNHISPEPINRQRSYITLLVSLQTLLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 114 TEIILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLYLYNTAG 173 Query: 191 TSSIIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + SII + +S P + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSIISMNLISIHPDTWANTFLWVACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR + L P P I L+L II + M Q+D+K LIAYSS++ Sbjct: 234 VLLKLGGYGMIRMTIILEPTTKSLAYPFII-LALWGIIMTGSICMRQSDMKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ M Sbjct: 293 HMGLVASGILIQTPWGFTGAIILMIAHGLTSSALFCLANTTYERTHSRTLLLARGMQIIM 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A ++ ++ANM LP +GE ++++S+F S +L G +++A YSL+L+ Sbjct: 353 PLMATWWLIMSLANMALPPLPNLMGELMIMISMFNWSAWTILLTGTGTLITAGYSLYLF 411 >gi|16117434|ref|NP_395449.1| NADH dehydrogenase subunit 4 [Chimaera monstrosa] gi|16026862|emb|CAC84208.1| NADH subunit 4 [Chimaera monstrosa] Length = 458 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 210/367 (57%), Gaps = 19/367 (5%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + +LGVD +S L++LT +L P +++S ++ R ++ + L+ ++ AF Sbjct: 52 FTNNNLGVDPLSSPLMILTCWLLPLMMMASQNHLKMEPINRQRMFITLLITLQLSLVMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S++++LFYI FE +LIP ++I WG ER+ A F YT GS+ +L A++ M Sbjct: 112 SSMELILFYIMFETTLIPTLILITRWGNQKERLNAGIYFLFYTLTGSLPLLIALLTMQNY 171 Query: 189 KKTSSIIDLYAMSKFPFSIQY---WM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + S+I L PFS + W W A +F +K+P++ H WLP AHV+AP Sbjct: 172 ANSLSLIML------PFSQNHTNEWANILWWTACLIAFLVKMPLYGVHLWLPKAHVEAPI 225 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA I+LK+GGYG +R ++ L PL Y P + LS+ ++ A + + QTD+K Sbjct: 226 AGSMILAAILLKLGGYGMMRIIVILDPLTKDYSYPFVV-LSIWGVVMAGSICLRQTDLKS 284 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG VT I GAM M+SHGL+SSALF Y+R+H+R + Sbjct: 285 LIAYSSVSHMGLVTAAILIQTPWSFMGAMVLMISHGLISSALFCLANTNYERIHSRTLLL 344 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GL +P A + +AN+ LP ++ +GE +++ S+F S +L G +++ Sbjct: 345 ARGLQTILPLLATWWFLTNLANLALPPSTNLVGELMIMTSLFSWSVWTLILTGLGTLITV 404 Query: 422 LYSLWLY 428 YSL+++ Sbjct: 405 CYSLYMF 411 >gi|296099664|gb|ADG95266.1| NADH dehydrogenase subunit 4 [Polypterus mokelembembe] Length = 459 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 143/405 (35%), Positives = 221/405 (54%), Gaps = 15/405 (3%) Query: 61 SFQMIEYYHWIDYFCSYH-LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYM 115 S + +YY + H + D IS L++LT +L P IL+S I R Y+ Sbjct: 38 SLTLFKYYSTTQWSNLNHIMATDMISTPLIILTCWLLPLMILASQNHISSEPINRQRSYI 97 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFG 174 + L++++I AF + +++LFYI FEA+LIP +II WG +ER+ A F YT G Sbjct: 98 TLLVSLQALLIMAFSATEIILFYIMFEATLIPTLIIITRWGNQAERLTAGTYFLFYTLAG 157 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHT 230 S+ +L A++ + T+ + + +MS + W +W A +F +K+P++ H Sbjct: 158 SLPLLIALLYL---YNTAGSLSMISMSLTTVTPDTWANTFLWTACVIAFLVKMPLYGVHL 214 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP AGS+ LA ++LK+GGYG IR + L P A++ A L+L II Sbjct: 215 WLPKAHVEAPIAGSMILAAVLLKLGGYGMIRMTIMLEP-ATKSLAYPFIILALWGIIMTG 273 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + M Q+D+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Sbjct: 274 SICMRQSDMKSLIAYSSVSHMGLVASGILIQTTWGFTGAIILMIAHGLTSSALFCLANTT 333 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R H+R + G+ MP A + ++ANM LP +GE +++S+F SN Sbjct: 334 YERTHSRTLLLARGMQVVMPLMATWWFIMSLANMALPPLPNLMGELTILVSMFNWSNWTI 393 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +L G +++A YSL+LY G + + ++ RE ++ Sbjct: 394 LLTGTGTLITASYSLYLYMSSQRGPAP-NNLTLMEHSHTREHLLL 437 >gi|313666487|ref|YP_004061420.1| NADH dehydrogenase subunit 4 [Protopterus aethiopicus] gi|313474914|dbj|BAJ40859.1| NADH dehydrogenase subunit 4 [Protopterus aethiopicus] Length = 461 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 138/388 (35%), Positives = 220/388 (56%), Gaps = 12/388 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + ++ VD IS L+VL+ +L P IL+S + + R Y+I + L++ ++ F Sbjct: 52 FTNSYMMVDSISSPLLVLSCWLLPLMILASQNHMLHEPLQRQRMYLILLMTLQTFLLLTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 ++ ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 MASELIMFYVMFEATLIPTLIIITRWGNQAERLQAGTYFLFYTLAGSLPLLIALLLINKN 171 Query: 189 KKTSSIIDL----YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 TSSII L ++ P++ W W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 MTTSSIILLNFFSTSLPSTPYAPTLW-WAASLFAFLVKMPLYGVHLWLPKAHVEAPIAGS 230 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L PL P I L+L II ++ + Q+D+K LIA Sbjct: 231 MVLAAILLKLGGYGMLRMLPILPPLTKPLIYPFII-LALWGIIMTGMICLRQSDLKSLIA 289 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G+ GAM M++HGL SS LF Y+R H+R + G Sbjct: 290 YSSVSHMGLVISGILIQTPWGLTGAMMLMIAHGLTSSLLFCLANTNYERTHSRTMLLARG 349 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P +A+ ++ ++ N+ LP + +GE L+IM+ F + L G +++A YS Sbjct: 350 MQTILPLFALWWLLASLTNLALPPSINLMGELLIIMATFNWTWLTIFLTGVGTLITATYS 409 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++Y G + ++ RE Sbjct: 410 LYMYMMTQHG-QVSNQTPMVEPAHTREH 436 >gi|52550949|ref|YP_089586.1| NADH dehydrogenase subunit 4 [Ichthyophis glutinosus] gi|42406116|gb|AAS13714.1| NADH dehydrogenase subunit 4 [Ichthyophis glutinosus] Length = 459 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 136/390 (34%), Positives = 217/390 (55%), Gaps = 11/390 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAF 129 F + + +D +S L +LT +LTP +L+S K + N R Y+ F+ L+ +I AF Sbjct: 51 FMNKYTSIDQLSAPLTILTCWLTPLMLLASQKHVNNNTMTRQRTYISMFIFLQIALIMAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L AI+ + E Sbjct: 111 SATELMLFYIAFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLMGSLPLLIAILSLQNE 170 Query: 189 KKTSSIID-LYAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S+ + L+A+ P + Q W W A +F +K+P++ FH WLP AHV+AP AGS+ Sbjct: 171 MATLSLTNTLFALQINPNMATNQIW-WFACLLAFMVKMPLYGFHLWLPKAHVEAPIAGSM 229 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L P + P I LSL + S + + QTD+K LIAY Sbjct: 230 ILAAVLLKLGGYGIMRISCMLTPFTEKSIYPFI-ILSLWGVAMTSSICLRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GA+ M++HGL SS LF Y+R H+R + G+ Sbjct: 289 SSVSHMGLVISAGLIQTTWSFSGAIALMIAHGLTSSMLFCLANTNYERTHSRVLLLARGM 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P ++ ++NM LP ++ +GE ++ ++F SN ++ GV+++ALY+L Sbjct: 349 QPILPLMTTWWLLANLSNMALPPSTNLLGELTIMSALFNWSNLTIIITGTGVLITALYTL 408 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G ++ + Q + RE ++ Sbjct: 409 NMFLITQHGPTQTH-LSQTEPTYTREHLLM 437 >gi|261879869|ref|ZP_06006296.1| proton-translocating NADH-quinone oxidoreductase [Prevotella bergensis DSM 17361] gi|270333462|gb|EFA44248.1| proton-translocating NADH-quinone oxidoreductase [Prevotella bergensis DSM 17361] Length = 507 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 132/420 (31%), Positives = 238/420 (56%), Gaps = 11/420 (2%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 Y GVDGI++++++L+ + +SW+ + +EY + F +L + V G F+S D+ Sbjct: 79 YRTGVDGIAVVMILLSAIIVITGTFASWQ-LHPMQKEYFLWFTLLSAGVFGFFISEDLFT 137 Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW---EKKTSS 193 ++F+E +LIPM+++IGVWG + Y+A K L GS ++ I+ + + + + Sbjct: 138 MFMFYEVALIPMYLLIGVWGTGPKEYSAMKLTLMLMGGSALLIIGILGIYFFNGQYSGTY 197 Query: 194 IIDLYAMSK---FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +D+ A+++ P +Q + F F + +FPFHTW P+ H APTA S+ AG+ Sbjct: 198 TMDVVAIAQSHAIPVFVQKVFFPFIFIGFGVLGALFPFHTWSPDGHASAPTAVSMLHAGV 257 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 ++K+GGYGC R + L P A++ + L+ I+++Y +L + VQTD+K + AYSS++H Sbjct: 258 LMKLGGYGCFRVAMFLLPDAARELCWIFLILTTISVVYGALSACVQTDLKYINAYSSVSH 317 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 G V + ++ + GA+ QMLSHGL+++ F +G+IY R TRD+ GGL+ +P Sbjct: 318 CGLVLFALCMMTQTAINGAVLQMLSHGLMTALFFAVIGMIYHRTGTRDVRRLGGLMKILP 377 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLW 426 +V +V +AN+GLP SGF+ E + + FQ ++ T ++A +V++A+Y L Sbjct: 378 FLSVAYVVAGLANLGLPLFSGFVAEMNIFVGAFQVNDTFHRTCTIIACTSIVITAVYILR 437 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + K+++ + +L D + ER V + G +P+ + + + +I++ Sbjct: 438 VVGKILYQKVPNQDYYKLTDATWDERLAVGALIFCVAGLGTFPLWAQSIINDAVGPMIQH 497 >gi|52551345|ref|YP_089599.1| NADH dehydrogenase subunit 4 [Rhinatrema bivittatum] gi|42406130|gb|AAS13727.1| NADH dehydrogenase subunit 4 [Rhinatrema bivittatum] Length = 458 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 137/395 (34%), Positives = 214/395 (54%), Gaps = 15/395 (3%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVI 126 + F + + +D IS L+ LT +L P I++S K R Y+ F+ L++ +I Sbjct: 48 LPQFTNKYTHIDPISSPLMTLTCWLLPLMIIASQQHTLKDPSNRQRMYITTFIALQASLI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AF + ++LLFYI FE +LIP VII WG +ER+ A F YT GS+ +L A++ + Sbjct: 108 LAFSASEILLFYIMFETTLIPTLVIITRWGSQTERLSAGTYFLFYTLLGSLPLLVAMLSL 167 Query: 186 CWEKKTSSIID-----LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + S+ ++ PF+ Q W W A +F +K+P++ H WLP AHV+AP Sbjct: 168 --QNNIGSVFTPIMQFAQQINTSPFTNQIW-WFACLIAFLVKMPLYGLHLWLPKAHVEAP 224 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGS+ LA I+LK+GGYG +R L P + + P + LSL I+ S + + Q D+K Sbjct: 225 IAGSMVLAAILLKLGGYGIMRVSTMLTPFSKESIYPFLI-LSLWGIMMTSTICLRQADLK 283 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 LIAYSS++HMG VT + G+ GAM M++HGL SS LF Y+R H R + Sbjct: 284 SLIAYSSVSHMGLVTAALLIQTPWGLSGAMTLMIAHGLTSSMLFCLANTNYERTHNRTML 343 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL +P A+ ++ +ANM LP + +GE ++ + F SN ++ G++++ Sbjct: 344 LTRGLQAILPLMAMWWLLSNLANMALPPSPNLMGEITIMTTTFNWSNLTILMTGAGMLIT 403 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 A+YSL + G + + + S RE ++ Sbjct: 404 AVYSLHMLLTTQHGQTPTH-MHLIPPSSTREHLLM 437 >gi|295065628|ref|YP_003587430.1| NADH dehydrogenase subunit 4 [Apalone ferox] gi|226838413|gb|ACO83390.1| NADH dehydrogenase subunit 4 [Apalone ferox] Length = 460 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 217/387 (56%), Gaps = 16/387 (4%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVI 126 I F +++L D +S L++L+ +LTP IL+S + R ++I ++L++++I Sbjct: 49 IMNFSNHNLATDQVSTPLIILSCWLTPLMILASQNHLSTEPLLRKRTFIITTILLQTLLI 108 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVM 185 F + D+++F++ FE++LIP ++I WG ER+ A F YT GS+ +L A++ + Sbjct: 109 MTFSATDLMMFFVLFESTLIPTLMLITRWGNQMERLNAGTYFLFYTLMGSLPLLIALLSL 168 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYW---MWI-AFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 T+S+ L P + W MW+ A +F IK+P++ H WLP AHV+AP Sbjct: 169 --HSNTNSLSILTMQLNPPTMMMTWTNSMWLLAMLTAFMIKLPLYGLHLWLPKAHVEAPI 226 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA I+LK+GGYG IR L L+ + P + L+L II L+ + QTD+K Sbjct: 227 AGSMILAAILLKLGGYGIIRITLTTNFLSKTTYYPFMI-LALWGIIMTGLICVRQTDLKS 285 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG VT S + GA+ M++HGL SS LF Y+R+H+R + Sbjct: 286 LIAYSSVSHMGLVTAATLSQTEWAYTGAITLMIAHGLTSSMLFCLANTNYERIHSRTLLL 345 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 + +P ++ ++ NM LP T +GE +I S+F SNT ++ G +++A Sbjct: 346 TQNMQLLLPLMGTWWLLASLTNMALPPTINLMGELTIITSLFNWSNTTIIITGLGTLITA 405 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLS 448 Y+L ++ +G E Q +K +S Sbjct: 406 TYTLHMFSSTQWG----ELPQHIKTIS 428 >gi|5835590|ref|NP_008441.1|ND4_13974 NADH dehydrogenase subunit 4 [Pelomedusa subrufa] gi|6093569|sp|O79677|NU4M_PELSU RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|3599984|gb|AAD05057.1| NADH dehydrogenase subunit 4 [Pelomedusa subrufa] Length = 459 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 140/388 (36%), Positives = 204/388 (52%), Gaps = 12/388 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKS-IQENF---REYMIAFLVLESMVIGAF 129 F + ++GVD IS L++LT+++TP IL S IQE R + + L+ + AF Sbjct: 52 FSNTYMGVDPISTPLLILTSWMTPLMILVSKNHLIQEPLSRKRTFTTTIISLQISLTLAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 +L+M+LF+ FEA+LIP +II WG ER+ A F YT GS+ +L A+ + Sbjct: 112 SALEMMLFFTMFEATLIPTLIIITRWGNQMERLSAGTYFLFYTLIGSLPLLIALTSLHTN 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T S+ L P W W A +F IK+P++ H WLP AHV+AP AGS Sbjct: 172 YNTLSLFILQL--NPPNLTNSWAHTMWWFALLMAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LAG++LK+GGYG IR L L PL P + LSL II L+ + QTD+K LIA Sbjct: 230 MILAGVLLKLGGYGIIRVTLMLNPLTKSLSYPFMT-LSLWGIIMTGLICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+ MG V + GA+ M++HGL SS LF Y+R H R + Sbjct: 289 YSSVGLMGLVISAALLQTPLSITGAIILMIAHGLSSSMLFCLANTNYERTHNRTLLLTHS 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ ++ NM LP T +GE +I S+F +N +L G ++SALYS Sbjct: 349 MQTLLPLMTIWWLLASLMNMALPPTINLMGELTIIASLFSWANITIILTGLGTLISALYS 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L ++ +G + + + RE Sbjct: 409 LHMFSTTQWGGTPPHHMHTITPSHTREH 436 >gi|220910213|ref|YP_002485524.1| proton-translocating NADH-quinone oxidoreductase subunit M [Cyanothece sp. PCC 7425] gi|219866824|gb|ACL47163.1| proton-translocating NADH-quinone oxidoreductase, chain M [Cyanothece sp. PCC 7425] Length = 513 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 157/464 (33%), Positives = 251/464 (54%), Gaps = 27/464 (5%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ +LP +G ++ F R+ +G AL I+ F++++ + S FD + QM Sbjct: 2 LSVLIWLPVVGAALLGFWPGTLPAPRARWG-ALAIAATTFLWTILLLSQFDLTQPGLQMQ 60 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILS--------SWKSIQENFREYMI 116 EY WI +Y LGVDG+S+ LV L +T I + ++ + R + I Sbjct: 61 EYLPWIPTLGLNYTLGVDGLSLPLVFLCNLVTLIVIFAGVSGVAGLDNDAVTKRARLFFI 120 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+ + + GA LS ++LLF IF+E LIP +++I +WGG+ R YA KF +YT I Sbjct: 121 LTLLANAGITGALLSQNLLLFLIFYELELIPFYLLIVIWGGNRREYAGMKFLIYTAVSGI 180 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 +L A + + S D +S FS Q + F IKIP+ P H+WLP+ Sbjct: 181 IILAAFLAIALLGDFRSF-DFSDISTGGFSQRTQLILLTMLLVGFGIKIPLVPLHSWLPD 239 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 A+V+A T ++ L G + K+G YG +RF L FP + AP + L+ + +IY ++ ++ Sbjct: 240 AYVEASTPVAILLGGALAKLGTYGLVRFCLGFFPETWKLIAPGLSILAAVCVIYGAMAAI 299 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 Q DIK+++AYSSI HMGYV +G + + GA+ QM+SHGL+ + LF+ VGVI ++ Sbjct: 300 AQKDIKRMVAYSSIGHMGYVLLGTVALTPLALVGAVAQMVSHGLILALLFYLVGVIEAKV 359 Query: 355 HTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 TR++ GL++ +P + ++++ MA+ G+PG GFI EFLV F + Sbjct: 360 GTRELDVLNGLLNPLRGLPATSALLILGGMASAGIPGLVGFIAEFLVFQGSFAIFPIPTL 419 Query: 412 LASFGVVLSALYSLWLYRKVVFG-----------VSKCEKVQQL 444 L+ L+A+Y + L + FG V++ E+V L Sbjct: 420 LSVIASGLTAVYFVILINRTCFGKLDNYTAYYPRVTRIEQVPAL 463 >gi|239997533|gb|ACS37049.1| NADH dehydrogenase subunit 4 [Dermophis mexicanus] Length = 457 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 130/360 (36%), Positives = 204/360 (56%), Gaps = 6/360 (1%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKS-IQENF---REYMIAFLVLESMVI 126 I F + + +D +S L++LT +LTP I++S I F R Y++ F+ L+ +I Sbjct: 48 IPEFMNQWMIMDQLSTPLMILTCWLTPLMIIASQNHMINTPFNRQRTYIMTFITLQLSLI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AF S +++ FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ M Sbjct: 108 MAFSSTELISFYIMFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLMGSLPLLIALLFM 167 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S+++L M++ + + W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 168 QKTMGTLSMMNLQYMNQTMMNTNMFWWTACLIAFMVKMPLYGLHLWLPKAHVEAPIAGSM 227 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R + L P ++ P + +SL I+ S + + QTD+K LIAY Sbjct: 228 ILAAVLLKLGGYGIMRISIMLTPFTKEHIYPFLI-MSLWGIVMTSSICLRQTDLKSLIAY 286 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HM V G GA+ M++HGL SS LF Y+R H R + G Sbjct: 287 SSVSHMALVISATLIQTPWGFTGAITIMIAHGLTSSMLFCLANTNYERTHNRTMLLTRGC 346 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++ + NM LP ++ +GE +I S+F SN +L GV+++A+YSL Sbjct: 347 QTILPIMTMWWLLANLMNMALPPSTNLMGEITIITSLFNWSNLTIILTGLGVIITAMYSL 406 >gi|13936189|ref|NP_114050.1|ND4_15649 NADH dehydrogenase subunit 4 [Lyciasalamandra atifi] gi|13873062|gb|AAK43355.1|AF154053_10 NADH dehydrogenase subunit 4 [Lyciasalamandra atifi] Length = 459 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 135/358 (37%), Positives = 210/358 (58%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + VD IS L+VLT +L P L+S ++ N R Y+ ++L+ +I AF S ++ Sbjct: 56 MTVDPISSPLLVLTCWLLPLMTLASQNHLKLNPLTRQRTYLTMLIILQMSLILAFSSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS +L A++V+ + S Sbjct: 116 ILFYISFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSFPLLVALLVIKVSLGSLS 175 Query: 194 IIDLYAMSKFPFSIQYW---MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 II + + S Y +W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 IILINTLQPT-LSQDYTSTTLWLACLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + + P I L+L + SL+ + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMIRISIMLTPLMKEMYYPFII-LALWGTVMTSLICIRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I + GAM M+SHGL+SSALF + Y+R H+R + G+ MP Sbjct: 294 MGLVIAAIMIQTPWSMTGAMILMISHGLISSALFCLANLSYERTHSRTLLLVRGMQTVMP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A ++ ++NM LP + GE +++S+F S ++ G++++A+Y+L+++ Sbjct: 354 LTATWWLLTNLSNMALPPSMNLWGELAIMVSLFNWSLWTILMTGAGILITAMYTLYMF 411 >gi|297531547|ref|YP_003672822.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacillus sp. C56-T3] gi|297254799|gb|ADI28245.1| proton-translocating NADH-quinone oxidoreductase, chain M [Geobacillus sp. C56-T3] Length = 525 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 160/523 (30%), Positives = 271/523 (51%), Gaps = 48/523 (9%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 FLS++ F P LG+ +++F + G A + + I +LF + +G ++ Sbjct: 3 FLSLLVFSPLLGIMLLMFVRKTDERMIQWLGTAATVPPL--ILALFAFIQSGRGFRLERL 60 Query: 65 IEYYHWID-----------YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 E W+ Y Y LG+DG+S++ +VLT L L+S E + Sbjct: 61 DEARDWVRLTDLPFLTDAAYVIRYELGIDGLSLVFIVLTAVLATLAALASMLVTTEK-KG 119 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y + L LE ++G F + + + F++F E +L+ MF+++G WGG ER AAY + LY Sbjct: 120 YFLWLLALEIGMLGVFSAANFVWFFLFLEVTLVAMFLLVGKWGGFERERAAYSYLLYNGL 179 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI-----------QYWMWIAFFCSFAIK 222 GS +L I V+ T++ L+ M P + + W+ +FA+K Sbjct: 180 GSALLLVVIAVLLARTGTANFALLHEMLHNPAAEGQLIAPLTAEGRRWLLGGLLLAFAVK 239 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +P PFH WL HV+AP + AG++LK+ YG IRF + LFP + FA V+ Sbjct: 240 LPAVPFHRWLIRVHVEAPPPVVMLHAGVLLKIAAYGMIRFGVGLFPDEFRSFAGVLALFG 299 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 +I ++Y +L+++ Q ++K+++AYSS++HMG V IG+ + ++G++GA+FQ ++HGL+S+ Sbjct: 300 VINVLYGALLALRQRELKRVLAYSSVSHMGVVLIGLGALNEAGIQGAVFQSVAHGLISAL 359 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 F VGV+ R+ T DI GGL MP ++ ++ +A +GLPG +GF+GEF + + Sbjct: 360 SFLLVGVLAHRMGTTDINRLGGLTKAMPLFSGYLLTAALALLGLPGLAGFVGEFTSFLGL 419 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFG-------------------VSKCEKVQQ 443 FQ +A + + G++ +A+YSL + FG S E Sbjct: 420 FQTKPALAAVGALGLIFAAVYSLKAVLDITFGRPRDRREAVMGWREPQASAASLGEPQGG 479 Query: 444 LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + DL +E + + L V G+YP + PL+++++ Sbjct: 480 VVDLQGKEAVPAFILVALIVAVGVYP----QLLAAPLTAVVKT 518 >gi|332886842|dbj|BAK22961.1| NADH dehydrogenase subunit 4 [Paedocypris progenetica] Length = 460 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 141/381 (37%), Positives = 215/381 (56%), Gaps = 11/381 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K + + R Y+ + L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQKHTNQEPITHQRLYITLLISLQMFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++V+ E T S Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLVLQKETGTLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +I L + ++W W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LITLQYTTPLELCTWGHKFW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL+ + P I L+L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRITMMLDPLSKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL P Sbjct: 295 MGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMIFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 V + +AN+ LP +GE +IM++F S T +L G +++A YSL+++ Sbjct: 355 LTTVWWFIMNLANLALPPLPNLMGEIKIIMALFNWSPTTILLTGLGTLITAGYSLYMFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRE 451 G + + + L+ RE Sbjct: 415 TQRGPAP-KHMNNLQPYHTRE 434 >gi|45388081|ref|NP_991037.1| NADH dehydrogenase subunit 4 [Aldrovandia affinis] gi|45259595|dbj|BAD12334.1| NADH dehydrogenase subunit 4 [Aldrovandia affinis] Length = 460 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 205/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I + R Y+ + L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHISPEPENRQRTYITLLISLQVFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLIM--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P S+ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTQPMSMTSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLNPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R+H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERIHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 353 LPLMAAWWFLANLANLALPPLPNLMGELMIITSMFNWSWLTIILTGLGTLITASYSLYMF 412 >gi|296099566|gb|ADG95175.1| NADH dehydrogenase subunit 4 [Polypterus bichir bichir] Length = 459 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 205/359 (57%), Gaps = 13/359 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D IS L++LT +L P IL+S I R Y+ + L++++I AF + ++ Sbjct: 57 MATDMISTPLIILTCWLLPLMILASQNHISTEPINRQRTYITLLVSLQTLLIMAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T+ Sbjct: 117 ILFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLYL---YNTAG 173 Query: 194 IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + + +M+ W +W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMLSMNLITIHPDNWAHTFLWAACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR + L P A++ A L+L II + M Q+D+K LIAYSS++ Sbjct: 234 VLLKLGGYGMIRMTIMLEP-ATKSLAYPFIILALWGIIMTGSICMRQSDMKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ M Sbjct: 293 HMGLVASGILIQTPWGFTGAIILMIAHGLTSSALFCLANTTYERTHSRTLLLARGMQIAM 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++ANM LP +GE ++++S+F SN +L G +++A YSL+LY Sbjct: 353 PLMATWWFIMSLANMALPPLPNLMGELMIMISMFNWSNWTILLTGMGTLITASYSLYLY 411 >gi|78157490|gb|ABB22864.1| NADH dehydrogenase subunit 4 [Chelydra serpentina] Length = 460 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 132/391 (33%), Positives = 221/391 (56%), Gaps = 13/391 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F +++LGVD IS L++L+ +LTP IL+S + R +M ++L+ +I AF Sbjct: 52 FSNHYLGVDQISSPLLILSCWLTPLMILASQNHLTTEPILRKRTFMTTMILLQISLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE++LIP VII WG ER+ A F YT GS+ +L A++ + + Sbjct: 112 STTELIMFFIMFESTLIPTLVIITRWGSQMERLNAGTYFLFYTLIGSLPLLIALLSLYTQ 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T S+ + +++ P + W W A +F IK+P++ H WLP AHV+AP AGS Sbjct: 172 NGTLSL-SIMQLNQ-PTMLNSWTHTMWWFALLTAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R ++ L P++ P + F SL +I A + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGIMRIMMMLNPMSKVLSYPFMVF-SLWGVIMAGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 289 YSSVSHMGLVIAAALTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLTQN 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ ++ NM LP T +GE +I S+F SNT ++ G +++A Y+ Sbjct: 349 MQLVLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNTTIIMTGLGTLITATYT 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++Y +G + ++ + RE ++ Sbjct: 409 LYMYSTTQWG-NMASYIKTIPPTHTREHLLM 438 >gi|62184434|ref|YP_220546.1| NADH dehydrogenase subunit 4 [Chirocentrus dorab] gi|58430855|dbj|BAD89198.1| NADH dehydrogenase subunit 4 [Chirocentrus dorab] Length = 460 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 140/380 (36%), Positives = 213/380 (56%), Gaps = 17/380 (4%) Query: 70 WIDY-------FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAF 118 W+D+ S +L +D +S L+VLT +L P IL+S Q N R Y+ F Sbjct: 41 WLDWTSEAGWGLSSAYLAIDPLSAPLLVLTCWLLPLMILASQNHAQADPQPNQRAYLSLF 100 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIF 177 + L+ +I AF + +M++FYI FEA+LIP VII WG +ER+ A F YT GS+ Sbjct: 101 VSLQVFLIMAFGATEMIMFYIMFEATLIPTIVIITRWGNQAERLGAGTYFLFYTLAGSLP 160 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPN 234 +L A++ + + T+S++ M+ + + W W+ +F +K+P++ H WLP Sbjct: 161 LLVALLGLHAQTGTTSMLISTLMAPLTLTTPGDKLW-WLGCLVAFLVKMPLYGTHLWLPK 219 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA ++LK+GGYG +R L PL + P I L+L ++ + + Sbjct: 220 AHVEAPVAGSMVLAAVLLKLGGYGMVRITSILHPLTKEMAYPFIA-LALWGVVMTGSICL 278 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K LIAYSS++HMG V GI G+ GA+ M++HGLVSSALF Y+R Sbjct: 279 RQTDLKSLIAYSSVSHMGLVIAGILIQTPWGITGAIILMVAHGLVSSALFCLANTSYERT 338 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 H+R + G+ P A + +AN+GLP +GE ++I S+F S VL Sbjct: 339 HSRTMLLARGMQTLFPLTATWWFIANLANLGLPPLPNLMGEIIIITSLFNWSPLTIVLTG 398 Query: 415 FGVVLSALYSLWLYRKVVFG 434 G +++A YSL+++ G Sbjct: 399 LGTLITAGYSLYMFLATQRG 418 >gi|298492476|ref|YP_003722653.1| proton-translocating NADH-quinone oxidoreductase subunit M ['Nostoc azollae' 0708] gi|298234394|gb|ADI65530.1| proton-translocating NADH-quinone oxidoreductase, chain M ['Nostoc azollae' 0708] Length = 498 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 158/471 (33%), Positives = 257/471 (54%), Gaps = 11/471 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ +LP +G +I + V+L +S + +++ F+ FD Q Sbjct: 2 LSVLIWLPIIGAAIIGLLPNTIIPKNKIRLVSLTLSFLVLLWNGFILLKFDLKTPGMQFQ 61 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 EY W + SY LGVDG+SIL++VL +FLT I SS ++ E R + L++ Sbjct: 62 EYLPWNEGLGLSYQLGVDGLSILMLVLNSFLTWIAIYSSSQN-TERPRLFHSMILLVSGG 120 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 V GAFL+ ++LLF++F+E LIP +++I +WGG +R YA KF +YT +L + Sbjct: 121 VAGAFLAENLLLFFLFYELELIPFYLLISIWGGEKRAYAGMKFLIYTAVSGALILATFLG 180 Query: 185 MCWEKKTSS-IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + W + S +D +Q + + F IKIP+ PFHTWLP+A+V+A Sbjct: 181 IVWLSGSPSFAMDGIFTQNLSAGMQLLLLVGIILGFGIKIPLIPFHTWLPDAYVEASAPI 240 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 ++ L G++ K+G YG +RF L LFP A AP + I IY S++++ Q DIK+++ Sbjct: 241 TILLGGVLAKLGTYGLLRFGLGLFPQAWNVVAPTLATWGAITAIYGSVIAIAQKDIKRMV 300 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI HMGY+ + S + GA+ QM SHG++ + LF VG++ ++ TR++ Sbjct: 301 AYSSIGHMGYILLAAASSTDLALVGAVAQMFSHGIILAILFHLVGIVEAKVGTRELDKLN 360 Query: 364 GL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN--SNTVAVLASFGVV 418 GL + +P + ++++ MA+ G+PG +GFI EF+V F + T+ +AS G Sbjct: 361 GLMSPIRGLPLISALLVLGGMASAGIPGLTGFIAEFIVFQGSFTSFPIPTLLCVASSG-- 418 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+A+Y + L + FG + + + E+ +A L +F G+ P Sbjct: 419 LTAVYFVILLNRTCFGRLNND-LGYYPRVIWDEKIPALILASLIIFLGVQP 468 >gi|186683825|ref|YP_001867021.1| NAD(P)H-quinone oxidoreductase subunit M [Nostoc punctiforme PCC 73102] gi|186466277|gb|ACC82078.1| proton-translocating NADH-quinone oxidoreductase, chain M [Nostoc punctiforme PCC 73102] Length = 498 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 145/428 (33%), Positives = 234/428 (54%), Gaps = 8/428 (1%) Query: 47 FSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWK 105 ++LF+ FD + Q EY W + SY +GVDG+SIL++VL + LT I SS K Sbjct: 42 WNLFILLKFDISNPTMQFKEYLPWNETLGLSYQIGVDGLSILMLVLNSLLTWISIYSSNK 101 Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 E R + L++ V GAFL+ ++LLF++F+E LIP +++I +WGG++R YA Sbjct: 102 E-TERPRLFYSMILLVSGGVAGAFLAENLLLFFLFYELELIPFYLLISIWGGAKRGYAGI 160 Query: 166 KFFLYTFFGSIFMLFAIVVMCW-EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 KF +YT +L + M W T+ D + + Q + F IKIP Sbjct: 161 KFLIYTAVSGALILATFLGMVWLSGSTNFAFDAVSTENLSTAKQILLLAGIVLGFGIKIP 220 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + PFHTWLP+A+V+A ++ L G++ K+G YG +RF L +FP A AP + I Sbjct: 221 LVPFHTWLPDAYVEASAPIAILLGGVLAKLGTYGLLRFGLGMFPHAWSIIAPTLAIWGAI 280 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 + IY +++++ QTDIK+++AYSS+ HMGY+ + + + GA+ QM SHG++ + LF Sbjct: 281 SAIYGAVIAIAQTDIKRMVAYSSVGHMGYILLAGAASTPLALVGAVAQMFSHGIILAILF 340 Query: 345 FCVGVIYDRLHTRDIFAYGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 VGV+ ++ TR++ GL + +P + ++++ MA+ G+PG +GFI EF+V Sbjct: 341 HLVGVVEAKVGTRELDKLNGLMSPIRGLPLISALLVLSGMASAGIPGLTGFIAEFIVFQG 400 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F +L L+A+Y L L + FG + + + E+ +A Sbjct: 401 SFSAFPIPTILCIVASGLTAVYFLILLNRTCFG--RLDNFAYYPKVLWSEKIPALILAAF 458 Query: 462 TVFFGIYP 469 +F G+ P Sbjct: 459 IIFLGVQP 466 >gi|197935716|ref|YP_002213660.1| NADH dehydrogenase subunit 4 [Chelydra serpentina] gi|118412510|gb|ABK81687.1| NADH dehydrogenase subunit 4 [Chelydra serpentina] Length = 461 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 132/391 (33%), Positives = 221/391 (56%), Gaps = 13/391 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F +++LGVD IS L++L+ +LTP IL+S + R +M ++L+ +I AF Sbjct: 52 FSNHYLGVDQISSPLLILSCWLTPLMILASQNHLTTEPILRKRTFMTTMILLQISLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE++LIP VII WG ER+ A F YT GS+ +L A++ + + Sbjct: 112 STTELIMFFIMFESTLIPTLVIITRWGSQMERLNAGTYFLFYTLIGSLPLLIALLSLYTQ 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T S+ + +++ P + W W A +F IK+P++ H WLP AHV+AP AGS Sbjct: 172 NGTLSL-SIMQLNQ-PTMLNSWTHTMWWFALLTAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R ++ L P++ P + F SL +I A + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGIMRIMMMLNPMSKVLSYPFMVF-SLWGVIMAGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 289 YSSVSHMGLVIAAALTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLTQN 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ ++ NM LP T +GE +I S+F SNT ++ G +++A Y+ Sbjct: 349 MQLVLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNTTIIMTGLGTLITATYT 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++Y +G + ++ + RE ++ Sbjct: 409 LYMYSTTQWG-NMASYIKTIPPTHTREHLLM 438 >gi|237869137|ref|YP_002907461.1| NADH dehydrogenase subunit 4 [Chitala ornata] gi|237648833|dbj|BAH58931.1| NADH dehydrogenase subunit 4 [Chitala ornata] Length = 460 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 205/375 (54%), Gaps = 12/375 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + HL D +S L+VLT +L P I++S I R Y+ + L++ +I AF + Sbjct: 54 NLHLATDQLSTPLLVLTCWLLPLMIIASQNHISTEPVNRQRTYISLLISLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLITQKNTG 173 Query: 191 TSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ +Y P + W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMLTMYYTQ--PLGLTTWADSIWWLGCLMAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L PL Q P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRIVTMLDPLTKQLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS+LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSSLFCLANTNYERTHSRTLLLTRGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + +AN+ LP +GE +I S+F S ++ G +++A YSL+ Sbjct: 351 AILPLMTTWWFIANLANLALPPLPNLMGELTIITSMFNWSYPTIIITGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKV 441 ++ G + + Sbjct: 411 MFLMTQRGPTTTHTI 425 >gi|237648861|dbj|BAH58957.1| NADH dehydrogenase subunit 4 [Notopterus notopterus] Length = 460 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 137/401 (34%), Positives = 216/401 (53%), Gaps = 17/401 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + HL D +S L++LT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLHLATDQLSTPLLILTCWLLPLMILASQNHISTEPINRQRTYISLLISLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A+++ Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLGGSLPLLVALLITQKNTG 173 Query: 191 TSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ +Y P + W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMLTMYYTQ--PLGLTSWADSIWWLGCLMAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L P+ Q P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRIVVMLDPMTKQLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI GA+ M++HGLVSS+LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWSFTGAIILMIAHGLVSSSLFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE +I S+F S ++ G +++A YSL+ Sbjct: 351 TILPLMATWWFIANLANLALPPLPNLMGELTIITSMFNWSYPTIIITGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 ++ G + + L RE + + P+ +L V Sbjct: 411 MFLMTQRGPTTTHTI-SLTPSHTREHLLMALHIIPVLLLVV 450 >gi|237869108|ref|YP_002907435.1| NADH dehydrogenase subunit 4 [Chitala blanci] gi|237648805|dbj|BAH58905.1| NADH dehydrogenase subunit 4 [Chitala blanci] Length = 460 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 205/375 (54%), Gaps = 12/375 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + HL D +S L+VLT +L P I++S I R Y+ + L++ +I AF + Sbjct: 54 NLHLATDQLSTPLLVLTCWLLPLMIIASQNHISTEPINRQRTYISLLISLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++ +K Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLIT--QKN 171 Query: 191 TSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLTMHYTQPLDLTAWADSIWWFGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL Q P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRIVVMLDPLTKQLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI GA+ M++HGLVSS+LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWSFTGAVILMIAHGLVSSSLFCLANTNYERTHSRTMLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE +I S+F S ++ G +++A YSL+ Sbjct: 351 TILPLMATWWFIANLANLALPPLPNLMGELTIIASMFNWSYPTIIITGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKV 441 ++ G + + Sbjct: 411 MFLMTQRGPTTTHTI 425 >gi|84488800|ref|YP_448903.1| NADH dehydrogenase subunit 4 [Malacochersus tornieri] gi|67005729|gb|AAY62520.1| NADH dehydrogenase subunit 4 [Malacochersus tornieri] Length = 459 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 212/384 (55%), Gaps = 14/384 (3%) Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMI 116 S Q+ + + F +Y+LGVD IS L +L+ +L+P IL+S + R + Sbjct: 38 SLQLFKPSMELTMFSNYYLGVDQISTPLFILSCWLSPLMILASQNHLTMEPISRKRTFAA 97 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGS 175 ++L++ +I AF + ++++F+I FEA+LIP V+I WG ER+ A F YT GS Sbjct: 98 TIILLQTSLILAFSTTELIMFFIMFEATLIPTLVVITRWGNQMERLNAGTYFLFYTLIGS 157 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQYWM----WIAFFCSFAIKIPMFPFHT 230 + +L A++ M + + + Y M P + W W A +F IK+P++ H Sbjct: 158 MPLLVALLYM---QTKNGTLSTYTMQLNQPTMMTSWAHSMWWFALLIAFMIKMPLYGLHL 214 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP AGS+ LA ++LK+GGYG IR + L PL+ P ++L +I S Sbjct: 215 WLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLNPLSKTLSYPFTV-MALWGVIMTS 273 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + + QTD+K LIAYSSI+HMG V + + GA+ M++HGL SS LF Sbjct: 274 SICLRQTDLKSLIAYSSISHMGLVIAATLTQTQWSHTGAITLMIAHGLTSSMLFCLANTN 333 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R H+R +F + +P + ++ ++ NM LP T +GE +I S+F SN Sbjct: 334 YERTHSRMLFLTQNMQLLLPLMGLWWLLASLTNMALPPTINLMGELTIITSLFNWSNITI 393 Query: 411 VLASFGVVLSALYSLWLYRKVVFG 434 ++ G++++A Y+L++ +G Sbjct: 394 LMTGLGMLITATYTLYMLITTQWG 417 >gi|296099706|gb|ADG95305.1| NADH dehydrogenase subunit 4 [Polypterus retropinnis] Length = 459 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 145/410 (35%), Positives = 223/410 (54%), Gaps = 19/410 (4%) Query: 58 GRSSFQMIEYY---HWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----EN 110 SS + +YY HW + + + D IS L++LT +L P IL+S I Sbjct: 35 ATSSLMLFKYYSTTHWSN--LNSMMATDMISSPLIILTCWLLPLMILASQNHISTEPINR 92 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFL 169 R Y+ + L++++I AF + +++LFYI FEA+LIP +II WG +ER+ A F Sbjct: 93 QRSYITLLVSLQALLIMAFSATEIILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLF 152 Query: 170 YTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 YT GS+ +L A++ + T+ + + +M + W +W A +F +K+P+ Sbjct: 153 YTLAGSLPLLVALLYL---YSTAGSLSMISMDFTTITPNTWANTFLWTACLIAFLVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA I+LK+GGYG IR L P A++ A L+L Sbjct: 210 YGVHLWLPKAHVEAPIAGSMILAAILLKLGGYGMIRMTHILEP-ATKSLAYPFIILALWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 II + M Q+D+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Sbjct: 269 IIMTGSICMRQSDMKSLIAYSSVSHMGLVASGILIQTPWGFTGAIILMIAHGLTSSALFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R H+R + G+ MP A + ++ANM LP +GE ++++S+F Sbjct: 329 LANTTYERTHSRTLLLARGMQIIMPLMATWWFIISLANMALPPLPNLMGELMIMVSMFNW 388 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 SN +L G +++A YSL+LY G + + ++ RE ++ Sbjct: 389 SNWTILLTGTGTLITASYSLYLYMSSQRGPAP-NNLISMEHSHTREHLLL 437 >gi|280978065|ref|YP_003345017.1| NADH dehydrogenase subunit 4 [Moringua microchir] gi|271280236|dbj|BAI53155.1| NADH dehydrogenase subunit 4 [Moringua microchir] Length = 460 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 139/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLS 131 + HL D +S L+VL+ +L P IL+S K + R Y+ + L+ ++ AF + Sbjct: 54 NMHLATDPLSTPLLVLSCWLLPLMILASQNHMMKEPENRQRAYITLLISLQILLTAAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M+LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 114 TEMILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLTGSLPLLVALLAL--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P S+ W W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLILQHTKPLSLLSWADKMWWLACLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L+ L PL + P I L+L II L+ + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRVLIVLNPLTKELAYPFIT-LALWGIIMTGLICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + G+ Sbjct: 291 SVSHMGLVVSGIMIQTPWGFTGAITLMIAHGLVSSMLFCLANTNYERTHSRTLLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE +I S F S +L G +++A YSL+ Sbjct: 351 TILPLMATWWFMANLANLALPPLPNLMGELAIISSTFNWSQWSIILTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTP-NHILALEPSHTREHLLI 438 >gi|52551371|ref|YP_089625.1| NADH dehydrogenase subunit 4 [Uraeotyphlus cf. oxyurus MW-212] gi|42406158|gb|AAS13753.1| NADH dehydrogenase subunit 4 [Uraeotyphlus cf. oxyurus MW-212] Length = 458 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 138/394 (35%), Positives = 224/394 (56%), Gaps = 14/394 (3%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF-----REYMIAFLVLESMV 125 + Y+ + + +D +S L+VLT +LTP +L+S ++ NF R Y++ F++L++ + Sbjct: 48 MPYYSNKYTTIDQLSAPLMVLTCWLTPLMMLAS-QNHMNNFTINYKRVYILMFILLQTTL 106 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVV 184 I AF + ++++F+I FE +LIP +II WG +ER+ A F YT GS+ +L AI++ Sbjct: 107 ILAFSATELMMFFIMFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLIGSLPLLIAILI 166 Query: 185 MCWEKKTSSIID---LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + E T S+ L + K S Q W W A +F +K+P++ FH WLP AHV+AP Sbjct: 167 LQNEMGTLSMTLTKFLPPIDKSTNSNQTW-WFACLIAFMVKMPLYGFHLWLPKAHVEAPI 225 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA I+LK+GGYG +R L PL + P + LSL + S + + QTD+K Sbjct: 226 AGSMILAAILLKLGGYGIMRISSLLVPLTKELMYPFLI-LSLWGVAMTSSICLRQTDLKS 284 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG V GA+ M++HGL SS LF Y+R H+R + Sbjct: 285 LIAYSSVSHMGLVIAAALIQTTWSFTGAIVLMIAHGLTSSMLFCLANTNYERTHSRTLLL 344 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 G+ +P A ++ ++NM LP +S +GE +I ++F SN L G++++A Sbjct: 345 ARGMQSILPLMATWWLLANLSNMALPPSSNLLGELSIISALFNWSNWTIFLTGTGIIITA 404 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 LY+L+++ ++ + + Q + RE ++ Sbjct: 405 LYTLYMF--ILAQRGPAQPLNQTEPTHTREHLLM 436 >gi|237756807|ref|ZP_04585295.1| NADH-quinone oxidoreductase, m subunit [Sulfurihydrogenibium yellowstonense SS-5] gi|237691036|gb|EEP60156.1| NADH-quinone oxidoreductase, m subunit [Sulfurihydrogenibium yellowstonense SS-5] Length = 257 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 115/236 (48%), Positives = 158/236 (66%), Gaps = 5/236 (2%) Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 APTAGSV LA ++LKMG YG +RF LP FP AS+YF PVIF LS+IAIIY +++++ QT Sbjct: 1 APTAGSVILAAVLLKMGTYGFVRFSLPWFPEASKYFMPVIFTLSVIAIIYTAMMAIAQTH 60 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 IK+LIAYSS++HMG+VT+G F+ GV GA+ M+SHGL S ALF G IY+RLH+ + Sbjct: 61 IKRLIAYSSVSHMGFVTMGTFALNPEGVNGAIITMISHGLTSGALFLAAGFIYERLHSYE 120 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GG+ +P +A + M+ MA+ GLPG SGF+GEFL ++ F+ S AVLA ++ Sbjct: 121 MKDLGGMAKFVPVFATLFMISAMASAGLPGLSGFVGEFLSLLGTFKVSILTAVLAGLSLI 180 Query: 419 LSALYSLWLYRKVVF-----GVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 + A Y+LWLY+K +F K ++ +LKDL+ E P + GIYP Sbjct: 181 VGAAYTLWLYKKTMFEEELLSEEKIKQYSKLKDLNTAELWSFLPFVIFMFVIGIYP 236 >gi|299829071|ref|YP_003735088.1| NADH dehydrogenase subunit 4 [Chimaera fulva] gi|298110897|gb|ADI57849.1| NADH dehydrogenase subunit 4 [Chimaera fulva] Length = 458 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 140/394 (35%), Positives = 216/394 (54%), Gaps = 20/394 (5%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F + LGVD +S L++LT +L P +++S ++ N + I L+ L+ ++ AF Sbjct: 52 FTNNLLGVDPLSSPLMILTCWLLPLMMMASQNHLKTEPINRQRLFITLLITLQLSLVMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S++++LFYI FEA+LIP ++I WG ER+ A F YT GS+ +L A++ M Sbjct: 112 SSMELILFYIMFEATLIPTLILITRWGNQKERLNAGIYFLFYTLAGSLPLLIALLTMQNY 171 Query: 189 KKTSSIIDLYAMSKFPFSIQY---WM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + S+I L PFS + W W A +F +K+P++ H WLP AHV+AP Sbjct: 172 ANSLSLIML------PFSQNHTNDWANILWWAACLIAFLVKMPLYGVHLWLPKAHVEAPI 225 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA I+LK+GGYG +R + L PL Y P I LS+ ++ A + + QTD+K Sbjct: 226 AGSMILAAILLKLGGYGMMRITIILDPLTKDYAYPFIV-LSIWGVVMAGSICLRQTDLKS 284 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG VT I GAM M+SHGLVSS LF Y+R+H+R + Sbjct: 285 LIAYSSVSHMGLVTAAILIQTPWSFMGAMVLMISHGLVSSTLFCLANTNYERIHSRTLLL 344 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GL +P A + +AN+ LP ++ +GE +++ S+F S +L G +++ Sbjct: 345 ARGLQTILPLLATWWFLTNLANLALPPSTNLVGELMIMTSLFSWSVWTLILTGLGTLITV 404 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 YSL+++ + + + RE M+ Sbjct: 405 CYSLYMFLMTQRS-APSNHLTAITPTHTREHLMI 437 >gi|62161239|ref|YP_214780.1| NADH dehydrogenase subunit 4 [Ambystoma tigrinum tigrinum] gi|49066274|gb|AAT49219.1| NADH dehydrogenase subunit 4 [Ambystoma tigrinum tigrinum] Length = 458 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 140/387 (36%), Positives = 222/387 (57%), Gaps = 16/387 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 LG+D IS L++LT +L P IL+S K ++EN R Y+ FL+L+ +I AF S ++ Sbjct: 56 LGLDFISSPLLILTCWLLPLMILASQKHLKENPQTRQRMYISMFLILQISLILAFTSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG SER+ A F YT GS+ +L A++ + + Sbjct: 116 ILFYIAFETTLIPTLIIITRWGNQSERLSAGTYFLFYTLAGSLPLLIALLAL---QNNLG 172 Query: 194 IIDLYAMS--KFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + LY + K P+ Y ++W + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 173 SLSLYLLENMKPPYLFMYTNKFLWFSCLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR + L P Y+ +I L+L +I SL+ M QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGIIRITMLLTPQKELYYPFMI--LALWGVIMTSLICMRQTDLKSLIAYSSV 290 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V + GA+ M+SHGL+SSALF + Y+R H+R + G+ Sbjct: 291 SHMGLVISAAIIQTPWSLTGAVILMISHGLISSALFCLANMNYERSHSRTLLLVRGMQAI 350 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + ++ ++NM LP + GE +++S+F S + G +++A Y+L++Y Sbjct: 351 LPLMGMWWLMVNLSNMALPPSINLWGELTIMVSLFNWSKWTILFTGLGTLITATYTLYMY 410 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + ++ RE C++ Sbjct: 411 QMTQRGPTPAH-LNKMSPNYTREHCLM 436 >gi|296099580|gb|ADG95188.1| NADH dehydrogenase subunit 4 [Polypterus bichir lapradei] Length = 459 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 205/359 (57%), Gaps = 13/359 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D IS L++LT +L P IL+S I R Y+ + L++++I AF + ++ Sbjct: 57 MATDMISTPLIILTCWLLPLMILASQNHISTEPINRQRTYITLLVSLQTLLIMAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T+ Sbjct: 117 ILFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLYL---YNTAG 173 Query: 194 IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + + +M+ W +W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMLSMNLITIHPNNWAHTFLWAACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR + L P A++ A L+L II + M Q+D+K LIAYSS++ Sbjct: 234 VLLKLGGYGMIRMTIMLEP-ATKSLAYPFIILALWGIIMTGSICMRQSDMKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ M Sbjct: 293 HMGLVASGILIQTPWGFTGAIILMIAHGLTSSALFCLANTTYERTHSRTLLLARGMQIVM 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++ANM LP +GE ++++S+F SN +L G +++A YSL+LY Sbjct: 353 PLMATWWFIMSLANMALPPLPNLMGELMIMISMFNWSNWTILLTGIGTLITASYSLYLY 411 >gi|296099678|gb|ADG95279.1| NADH dehydrogenase subunit 4 [Polypterus palmas buettikoferi] Length = 459 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 207/359 (57%), Gaps = 7/359 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++ + D +S L++LT +L P IL+S I R Y+ + L++++I AF + Sbjct: 54 NHMMATDMVSTPLIILTCWLLPLMILASQNHISSEPINRQRSYITLLVSLQTLLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 114 TEIILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLYIYNTAG 173 Query: 191 TSSIIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + S++ + ++ P + ++W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMVSMNLITIHPGTWANTFLWTACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR + L P+ P I L+L II + M Q+D+K LIAYSS++ Sbjct: 234 VLLKLGGYGMIRMTIMLEPMTKSLAYPFII-LALWGIIMTGSICMRQSDMKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI GA+ M++HGL SSALF Y+R H+R + G+ M Sbjct: 293 HMGLVASGILIQTPWSFTGAIILMIAHGLTSSALFCLANTTYERTHSRTLLLARGMQIIM 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A ++ ++ANM LP +GE ++++S+F S +L G +++A YSL+L+ Sbjct: 353 PLMATWWLIMSLANMALPPLPNLMGELMIMVSMFNWSTWTILLTGTGTLITASYSLYLF 411 >gi|237880828|ref|YP_002907474.1| NADH dehydrogenase subunit 4 [Notopterus notopterus] gi|237648847|dbj|BAH58944.1| NADH dehydrogenase subunit 4 [Notopterus notopterus] Length = 460 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 138/401 (34%), Positives = 216/401 (53%), Gaps = 17/401 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + HL D +S L++LT +L P I++S I R Y+ + L++ +I AF + Sbjct: 54 NLHLATDQLSTPLLILTCWLLPLMIIASQNHISTEPINRQRTYISLLISLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLITQKNMG 173 Query: 191 TSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ +Y P + W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMLTMYYTQ--PLGLMSWADSIWWLGCLMAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL Q P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRIVVMLDPLTKQLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI GA+ M++HGLVSS+LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWSFTGAIILMIAHGLVSSSLFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE +I S+F S ++ G +++A YSL+ Sbjct: 351 TILPLMATWWFIANLANLALPPLPNLMGELTIITSMFNWSYPTIIITGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 ++ G + + L RE + + P+ +L V Sbjct: 411 MFLMTQRGPTTTHTI-SLTPSHTREHLLMALHIIPVLLLVV 450 >gi|288909089|dbj|BAI77322.1| NADH dehydrogenase subunit 4 [Linophryne bicornis] Length = 460 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 219/384 (57%), Gaps = 11/384 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDML 135 G D +S L+VLT +L P IL+S + R Y++ L+ +I AF + ++L Sbjct: 58 GTDPVSAPLLVLTCWLLPLMILASQNHLTCEPWNRQRMYLVLLTTLQFFLIMAFSATELL 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FEA+LIP V+I WG ++R+ A L+T GS+ +L A++++ +T S+ Sbjct: 118 MFYIMFEATLIPTLVLITRWGNQTQRLNAGTYLLLFTLVGSLPLLVALLILRNNTETLSM 177 Query: 195 IDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + L S P F+ + W W + +F +K+PM+ H WLP AHV+AP AGS+ LA I+ Sbjct: 178 LILPYSSVPPLNLFTDKLW-WTSCLLAFLVKMPMYGVHLWLPKAHVEAPVAGSMVLAAIL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR L+ L PL + P I F +L +I A + ++QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGMIRMLICLEPLTKELSYPFIIF-ALWGLIMAGSICILQTDLKSLIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V G+ G+ GAM M++HGL SSALF Y+R H+R + G+ +P Sbjct: 296 GLVIGGVLIQTPWGLTGAMTLMIAHGLTSSALFCLANTNYERTHSRTMILVRGMQLILPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++AN+ LP +GE +++ S+F S L G +++A YSL+++ V Sbjct: 356 AATWWLIASLANLALPPFPNLMGELMILTSLFNWSPWTIALTGAGTLITAAYSLYMFITV 415 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S + L+ RE M+ Sbjct: 416 QRG-STPPHIFGLEPTHTREHLMM 438 >gi|29570749|ref|NP_818874.1| NADH dehydrogenase subunit 4 [Corydoras rabauti] gi|29501090|dbj|BAC67451.1| NADH dehydrogenase subunit 4 [Corydoras rabauti] Length = 460 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 141/386 (36%), Positives = 216/386 (55%), Gaps = 11/386 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S I+ R Y+ L+ +I AF + + Sbjct: 56 YLGTDPLSTPLLVLTCWLLPLMILASQNHIKNEPLSRQRTYITLLTSLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IMMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLHQNMGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L M+ +S + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMITLQYSQPMTLLSWSDKIW-WLGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 ILLKLGGYGMMRMMIMLDPLSKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGLVSSALF Y+R H+R + G+ + Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTTYERTHSRTMVLARGMQLLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A + +AN+ LP +GE L+I ++ S ++ G +++A YSL+L+ Sbjct: 354 PLTATWWFIANLANLALPPLPNLMGELLIITAMLNWSPWTLIITGTGTLITAAYSLYLFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 K G + L+ RE ++ Sbjct: 414 KTQRGTLPTHII-NLQPYHTREHLLM 438 >gi|225874138|ref|YP_002755597.1| NADH dehydrogenase I, M subunit [Acidobacterium capsulatum ATCC 51196] gi|225794046|gb|ACO34136.1| NADH dehydrogenase I, M subunit [Acidobacterium capsulatum ATCC 51196] Length = 543 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 163/535 (30%), Positives = 276/535 (51%), Gaps = 54/535 (10%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L+ +T LPF G F +L L R +A+ I+ + + +L +W F+ S Q Sbjct: 7 LTWLTALPFAGAFAVL---ALSRNRALARALAILIAVASLLGTLALWVHFNAASSGMQFE 63 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 + Y W +YH+G+DG+ +LL+VL+ + +++SW + Y L LE Sbjct: 64 QQYAWASSIGLTYHVGIDGLGLLLLVLSAIVVLMSLIASWSNPAHG-PVYFALVLFLECG 122 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA--- 181 + G F +L+ L +++++E +LIP F ++ WGG++R A+ +FFLYT GS+ +L A Sbjct: 123 LFGTFTALNFLHWFLYWELTLIPAFFLVRQWGGAKRAQASLQFFLYTMVGSVALLVAFLA 182 Query: 182 ----------IVVMCWEKK---TSSIIDLYAMSKFPFS----IQYWMWIAFFCSFAIKIP 224 + + W + T+++ +A + + S + +W A F FA+K P Sbjct: 183 LYLAAGTFDFLALAQWAHQGQLTAALQQQFAWTGWSGSSLALLLFW---AVFLGFAVKTP 239 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + PFHTWLP + +A + ++ L G M KMG YG +R LLP+FP Q + +L+L Sbjct: 240 VVPFHTWLPATYAEASSETTMLLTGAMSKMGVYGFLRILLPIFPEQMQQMLTPLLWLALA 299 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI-----FSGMK--------SGVEGAMF 331 +I+ +L + Q D+K+ AYSS+ H+GY +GI F+G + + G + Sbjct: 300 SIVLPALAAWAQRDLKRTFAYSSVNHLGYCVLGICVVARFTGADPSLLLEKSAALTGVLL 359 Query: 332 QMLSHGLVSSALFFCVGVIYDRLH-TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 Q+ SHGL ++ALF+ V ++ R R + +GGL +P + +M + A++GLPG + Sbjct: 360 QIFSHGLTAAALFWFVALLERRNQGKRALTDFGGLRKIVPVFCGLMGIAIFASLGLPGLN 419 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG-VSKCEKVQQLKDLSL 449 GF GEFL+ VF + A LA G++ +A++ L + ++V FG + + ++ + DL+ Sbjct: 420 GFPGEFLIFKGVFPLAGWAAALALLGLLFTAVFLLAVLQRVFFGPMRESQQQAPMPDLTA 479 Query: 450 RERCMVYPIAVLTVFFGIYPVPIRDTFS-----------VPLSSIIENYTLKTGY 493 ER P+ L + G YP I + PL + T +GY Sbjct: 480 AERFAFAPVIALMLVLGFYPQLIAGKMTGTVAQWTAPQAAPLQTAANTVTNPSGY 534 >gi|271962243|ref|YP_003336439.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] gi|270505418|gb|ACZ83696.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] Length = 537 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 162/429 (37%), Positives = 239/429 (55%), Gaps = 32/429 (7%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSS-FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTF 94 AL +S I F S+ + + FD G ++ Q W+ +HLGVDGIS+ LVVLTT Sbjct: 38 ALAVSGITFALSVVLAAGFDYGDAARVQFSTDLAWVPGLDLRFHLGVDGISLPLVVLTTL 97 Query: 95 LTPFC-ILSSW------------KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFF 141 LT C + W KS R + LVLE +IG FL+LD+LLF++FF Sbjct: 98 LTFLCSVYLCWGRADGPGQLLRPKSGGNRPRALVFTLLVLEVGMIGTFLALDLLLFFVFF 157 Query: 142 EASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS 201 E LIPM+ +I VWGG R AA KF LYT +L +++ W + + +D+ A++ Sbjct: 158 EVVLIPMYFVIAVWGGRARRAAAIKFILYTLL-GSVVLLLGLLLIWAQ--TGTLDMIALA 214 Query: 202 K-----FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256 + S+Q ++A A+K PM+P HTWLP AH +APT GSV LAG++LKMG Sbjct: 215 RAQGAGMSSSVQVLAFVAVGIGLAVKTPMWPLHTWLPAAHTEAPTVGSVLLAGVLLKMGT 274 Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 YG R +P+ P + AP + ++I I+Y SL + Q D+K++IAYSSI HMG+V + Sbjct: 275 YGFARIAIPVLPDGAAAMAPWLGAFAVIGIVYGSLACLAQRDLKRMIAYSSIGHMGFVLL 334 Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY-GGLVHNMPRYAVV 375 G + G+ GA+F ++HGL+++ LFF G I DR T D+ + GG++ +P + Sbjct: 335 GFATLTPVGINGALFGNIAHGLITALLFFIAGAIKDRYGTTDMPSLGGGMLSRLPHLGSL 394 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN--------TVAVLASFGVVLSALYSLWL 427 + +A++G+PG +GF GE L ++ + + T L G VL+A Y L + Sbjct: 395 LTFAAVASLGMPGLAGFWGEMLALLGAYGPAAGLSRPLYLTFMALGGLGTVLTAAYFLLM 454 Query: 428 YRKVVFGVS 436 +V G S Sbjct: 455 LSRVTHGRS 463 >gi|139474634|ref|YP_001122870.2| NADH dehydrogenase subunit 4 [Macrochelys temminckii] Length = 460 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 236/455 (51%), Gaps = 27/455 (5%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 L L ++L + + C + + L T +F +L +F S Sbjct: 1 MLKILTPTIMLLPTIMLCKTKQLWPTTL---TYSFTIALLSLQLFKPSLEST-------- 49 Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVI 126 +D F +Y+LGVD IS L++L+ +LTP IL+S + R ++I + L+ +I Sbjct: 50 MD-FSNYYLGVDQISAPLLILSCWLTPLMILASQNHLATEPILRKRTFIITMISLQISLI 108 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AF + ++++F+I FEA+LIP VII WG ER+ A F YT GS+ +L A++ + Sbjct: 109 LAFSATELIMFFIMFEATLIPTLVIITRWGNQMERLSAGTYFLFYTLTGSLPLLIALLSL 168 Query: 186 CWEKKTSSIIDLYAMS-KFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + T + L+ M P + W W A +F IK+P++ H WLP AHV+AP Sbjct: 169 YTQNGT---LSLHMMQLNQPIMLNSWAHTMWWFALLTAFMIKMPLYGLHLWLPKAHVEAP 225 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGS+ LA ++LK+GGYG +R + L P + + P + F SL +I S + + QTD+K Sbjct: 226 IAGSMILAAVLLKLGGYGIMRITMMLNPASKMLYYPFMVF-SLWGVIMTSSICLRQTDLK 284 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 LIAYSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 285 SLIAYSSVSHMGLVIAAALTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL 344 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 + +P + ++ ++ NM LP T +GE +I S+F SN + G +++ Sbjct: 345 LTQNMQLVLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITITMTGLGTLIT 404 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 A Y+L++Y +G ++ + RE ++ Sbjct: 405 ATYTLYMYSTTQWG-KMASYIKAIPPTHTREHLLM 438 >gi|190349436|ref|YP_001974497.1| NADH dehydrogenase subunit 4 [Capros aper] gi|139000480|dbj|BAF51721.1| NADH dehydrogenase subunit 4 [Capros aper] Length = 460 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 136/388 (35%), Positives = 218/388 (56%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S +L D +S L++L+ +L P +L+S + E R ++ +VL++++I AF + Sbjct: 54 SVYLATDSLSTPLIILSCWLLPLMLLASQNHMSEEPLNRQRVFITLLVVLQALLIMAFGT 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP +I WG ER+ A F YT GS+ +L A++ + + Sbjct: 114 TEMIMFYVMFEATLIPTLFLITRWGNQEERLKAGTYFLFYTLVGSLPLLVALLYISTKLG 173 Query: 191 TSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S++ L YA MS P++ + W W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLTLQYAPLMSLSPYTSKMW-WVGCVLAFLVKMPLYGMHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L L P + P + F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGLMRMLTVLEPFTKELCYPFMIF-ALWGVIMTGTICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GIF+ G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGIFTQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQA 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A + ++AN+ LP +GE ++I+S+F S L G +++A YSL++ Sbjct: 352 IFPLMASWWFIASLANLALPPLPNLMGELMIIVSLFNWSWWTIFLTGTGTLITAGYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G L+ RE ++ Sbjct: 412 FLMTQRGPVPAHSA-GLEPTHTREHLLI 438 >gi|86610297|ref|YP_479059.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 4 family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558839|gb|ABD03796.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 511 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 140/422 (33%), Positives = 239/422 (56%), Gaps = 9/422 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD Q ++ + WI SY LG+DG S+L+V L LT +L++ ++ Sbjct: 44 FDLQAEGLQWVQRWDWIPAIGLSYSLGLDGFSLLMVALNGLLTLIAVLTAEPEVKRPNLL 103 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L + V GAF++ ++LLF++F+E LIP++++I +WG +R YAA KF +YT Sbjct: 104 YG-CILFMSGSVNGAFVAQNLLLFFLFYELVLIPIYLLISIWGSPKRDYAAIKFLIYTAV 162 Query: 174 GSIFMLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 +IF+L A + + W + + ++++ S P + Q +A +F IK+P+ PFHTW Sbjct: 163 SAIFLLGAFLAIYWLGDPHSFELLEIRITSLSPVA-QTLTLLALIVAFGIKMPLIPFHTW 221 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP+A+ ++ ++ L GI+ K+G YG RF L LFP A ++ + IA++ +L Sbjct: 222 LPDAYGESSPPVAILLGGILSKLGTYGLFRFGLQLFPQAWADLGGILAWWGAIAVLSGAL 281 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 ++ Q DIK+++AYSSI HMGY+ +G+ + + GAM QM+SHGL+ + LF VG++ Sbjct: 282 AAIAQKDIKRMVAYSSIGHMGYILLGMAAATPISLTGAMVQMVSHGLILALLFDLVGLVE 341 Query: 352 DRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 ++ TRD+ GL++ +P + ++++ MA+ G+PG GF+ EFL+ +Q+ Sbjct: 342 RKVGTRDLDVLNGLLNPLRGLPTVSALLILGGMASAGIPGLVGFVAEFLIFQGSYQDFPL 401 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 +++ G L+A+Y + L + FG + + ER + L V+FGI Sbjct: 402 PTLISICGTGLTAVYFVILLNRTCFG-RLDNRTAYYPRVHGWERIPGLILTALIVWFGIQ 460 Query: 469 PV 470 P+ Sbjct: 461 PM 462 >gi|5835327|ref|NP_008325.1|ND4_11652 NADH dehydrogenase subunit 4 [Polypterus ornatipinnis] gi|2499267|sp|Q95917|NU4M_POLOR RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|1663759|gb|AAC60314.1| NADH dehydrogenase subunit 4 [Polypterus ornatipinnis] gi|25006446|dbj|BAC23941.1| NADH dehydrogenase subunit 4 [Polypterus ornatipinnis] Length = 459 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 135/359 (37%), Positives = 209/359 (58%), Gaps = 7/359 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 +Y L D IS L++LT +L P I++S + R Y+ + L++++I AF + Sbjct: 54 NYMLATDMISTPLIILTCWLLPLMIIASQNHMSTEPINRQRSYITLLVSLQALLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 114 TEIILFYIMFESTLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLYLYNTAG 173 Query: 191 TSSIIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + S I + +S P + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSFISMNLISIPPNTWTNTFLWVACVTAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG IR + L P A++ A L+L II + M Q+D+K LIAYSS++ Sbjct: 234 ILLKLGGYGMIRMTIMLEP-ATKSLAYPFIILALWGIIMTGSICMRQSDMKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ + Sbjct: 293 HMGLVASGILIQTTWGFTGAIILMIAHGLTSSALFCLANTAYERTHSRTLLLARGMQIIL 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++ANM LP +GE ++++S+F SN +L G +++A YSL+LY Sbjct: 353 PLMATWWFIMSLANMALPPLPNLMGELMILVSMFNWSNWTILLTGTGTLITASYSLYLY 411 >gi|53805244|ref|YP_113034.1| NADH ubiquinone/plastoquinone complex subunit [Methylococcus capsulatus str. Bath] gi|53759005|gb|AAU93296.1| putative NADH ubiquinone/plastoquinone complex subunit [Methylococcus capsulatus str. Bath] Length = 511 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 137/427 (32%), Positives = 229/427 (53%), Gaps = 14/427 (3%) Query: 55 FDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD Q +E + WI +Y HLGVDG+++L L L I++SW ++Q R Sbjct: 54 FDPVDPRLQFVERHAWIPSLNAYYHLGVDGVTVLFPFLGAVLNLAVIVASWTAVQNRVRL 113 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTF 172 Y L+L +G F + D++LF++F+E ++ P++++ G G G +R YAA K+ L+ Sbjct: 114 YYGMILILGGATVGVFCATDLMLFFLFWEMTIAPVYLLAGFCGTGPQRRYAAIKYALFML 173 Query: 173 FGSIFMLFAIVVMCWEK--------KTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIK 222 G I +LFAI+++ D A+ P + +++ F FAIK Sbjct: 174 AGGIPLLFAILLLALNHARFLGVPAPAGLSFDYLALLDTPLDGRLATTVFLLFMLGFAIK 233 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 P+FPFH WLP ++ P + +LAG LK+G +G +RF +PL P A+ ++ Sbjct: 234 APLFPFHGWLPTLAMEGPAGLAAWLAG--LKLGAFGIVRFAVPLSPQAALEHRGLVAGAG 291 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 ++ Y +LV+M QT++++L+A+SSI+H+G V G+ + V+GA+FQ+ + G+V+ Sbjct: 292 IVTAAYGALVAMRQTNLRRLLAFSSISHVGLVVAGLAALNFQAVQGALFQLANFGIVAGG 351 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF G I R+ + +I GGL MP + + +A++G+PGTSGF E L+++ + Sbjct: 352 LFLVAGFIQHRIGSTEIDRLGGLARPMPLLGALFFLLGLASLGVPGTSGFAAEHLILIGL 411 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 + + + A F V++A L +R+ G K DL RER + +A Sbjct: 412 LRQHMGLGLAALFAGVVAAAGMLGYFRRAFLGPDKLGMAAGEWDLRSRERLVAGALAAWV 471 Query: 463 VFFGIYP 469 V G++P Sbjct: 472 VILGLFP 478 >gi|27885207|gb|AAO26084.1| NADH dehydrogenase subunit 4 [Dimeresia howellii] Length = 417 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 127/382 (33%), Positives = 214/382 (56%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI++F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINFFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I FF +FA+K+P+ P HTWLP+ H + Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGFFIAFAVKLPILPLHTWLPDTHGEX 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 A F+P + + I IIYA+ S Q ++ Sbjct: 190 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAHAIFSPWLMIVGPIQIIYAASTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|116739703|gb|ABK20575.1| NADH dehydrogenase subunit 4 [Macrochelys temminckii] Length = 461 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 236/455 (51%), Gaps = 27/455 (5%) Query: 11 FLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHW 70 L L ++L + + C + + L T +F +L +F S Sbjct: 1 MLKILTPTIMLLPTIMLCKTKQLWPTTL---TYSFTIALLSLQLFKPSLEST-------- 49 Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVI 126 +D F +Y+LGVD IS L++L+ +LTP IL+S + R ++I + L+ +I Sbjct: 50 MD-FSNYYLGVDQISAPLLILSCWLTPLMILASQNHLATEPILRKRTFIITMISLQISLI 108 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AF + ++++F+I FEA+LIP VII WG ER+ A F YT GS+ +L A++ + Sbjct: 109 LAFSATELIMFFIMFEATLIPTLVIITRWGNQMERLSAGTYFLFYTLTGSLPLLIALLSL 168 Query: 186 CWEKKTSSIIDLYAMS-KFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + T + L+ M P + W W A +F IK+P++ H WLP AHV+AP Sbjct: 169 YTQNGT---LSLHMMQLNQPIMLNSWAHTMWWFALLTAFMIKMPLYGLHLWLPKAHVEAP 225 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGS+ LA ++LK+GGYG +R + L P + + P + F SL +I S + + QTD+K Sbjct: 226 IAGSMILAAVLLKLGGYGIMRITMMLNPASKMLYYPFMVF-SLWGVIMTSSICLRQTDLK 284 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 LIAYSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 285 SLIAYSSVSHMGLVIAAALTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL 344 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 + +P + ++ ++ NM LP T +GE +I S+F SN + G +++ Sbjct: 345 LTQNMQLVLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITITMTGLGTLIT 404 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 A Y+L++Y +G ++ + RE ++ Sbjct: 405 ATYTLYMYSTTQWG-KMASYIKAIPPTHTREHLLM 438 >gi|45439393|ref|NP_990985.1| NADH dehydrogenase subunit 4 [Ambystoma mexicanum] gi|44843543|emb|CAE48099.1| NADH deydrogenase subunit 4 [Ambystoma mexicanum] gi|49066260|gb|AAT49206.1| NADH dehydrogenase subunit 4 [Ambystoma mexicanum] Length = 458 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 139/385 (36%), Positives = 222/385 (57%), Gaps = 12/385 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 LG+D IS L++LT +L P IL+S K ++EN R Y+ FL+L+ +I AF S ++ Sbjct: 56 LGLDFISSPLLILTCWLLPLMILASQKHLKENPQTRQRMYISMFLILQISLILAFTSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG SER+ A F YT GS+ +L A++ + + S Sbjct: 116 ILFYIAFETTLIPTLIIITRWGNQSERLSAGTYFLFYTLAGSLPLLIALLALQNNLGSLS 175 Query: 194 IIDLYAMSK---FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L M F ++ ++ +W + +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 LYLLETMKPVYLFMYTNKF-LWFSCLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L P Y+ +I L+L +I SL+ M QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGIIRITMLLTPQKELYYPFMI--LALWGVIMTSLICMRQTDLKSLIAYSSVSH 292 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V + GA+ M+SHGL+SSALF + Y+R H+R + G+ +P Sbjct: 293 MGLVISAAIIQTPWSLTGAVILMISHGLISSALFCLANMNYERSHSRTLLLVRGMQTILP 352 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + ++ ++NM LP + GE +++S+F S + G +++A Y+L++Y+ Sbjct: 353 LMGMWWLMVNLSNMALPPSMNLWGELTIMVSLFNWSKWTILFTGLGTLITATYTLYMYQM 412 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G + + ++ RE C++ Sbjct: 413 TQRGPTPAH-LNKMSPNYTREHCLM 436 >gi|213136315|gb|ACJ43852.1| NADH dehydrogenase subunit 4 [Salamandrina terdigitata] Length = 459 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 139/402 (34%), Positives = 217/402 (53%), Gaps = 15/402 (3%) Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMI 116 S MI + ++ +D +S LV+LT +L P ++S ++ N R Y+I Sbjct: 38 SLTMINMQFEFPMMTNTYMSIDQMSSPLVILTCWLLPLMTMASQNHMKINPITRQRTYLI 97 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGS 175 +L+ +I AF S +++LFYI FE +LIP +II WG +ER+ A F YT GS Sbjct: 98 MLSILQMSLIIAFSSTELILFYIAFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGS 157 Query: 176 IFMLFAIVVMCWEKKTSSI-----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 + +L A++VM + S+ I P I +W+A +F +K+P++ H Sbjct: 158 LPLLVALLVMQNSLGSLSLTLINFIQPMLTQDNPNKI---LWLACLLAFLVKMPLYGVHL 214 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP AGS+ LA ++LK+GGYG IR + L PL P I L+L ++ S Sbjct: 215 WLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITVMLSPLTKSMSYPFII-LALWGVVMTS 273 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 ++ + QTD+K LIAYSS++HMG V + + GA+ M+SHGL+SSALF Sbjct: 274 MICVRQTDLKSLIAYSSVSHMGLVIAAVLIQTPWSLTGAVILMISHGLISSALFCLANFN 333 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R H+R + G ++P A + ++NM LP + GE ++MS+F SN Sbjct: 334 YERTHSRTLMLVRGAQTSVPLMASWWLFANLSNMALPPSMNLWGELTIMMSLFNWSNWTI 393 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 ++ G +++ALYSL+++ G + + Q+ RE Sbjct: 394 LITGIGTLITALYSLYVFLMTQRG-PIMQTINQMSPSHTREH 434 >gi|257095398|ref|YP_003169039.1| proton-translocating NADH-quinone oxidoreductase subunit M [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047922|gb|ACV37110.1| proton-translocating NADH-quinone oxidoreductase, chain M [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 504 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 158/441 (35%), Positives = 246/441 (55%), Gaps = 11/441 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD + FQ E W S+ LG+DGIS+ +VVL T L+ I+SS I+ R Sbjct: 63 FDPAGAEFQFFETRPWNPRVGSHLALGLDGISLPMVVLATLLSFVAIVSS-TGIRSGARL 121 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y LVLE+ ++ F + D LFY+ +E +LIP+F +I GG+ R AA F LYT Sbjct: 122 YFSLLLVLETSLLIVFTARDWSLFYVCWELTLIPLFFLIDRLGGANRHRAALNFVLYTLG 181 Query: 174 GSIFMLFAIVVMCWEKKTSS---IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHT 230 GS+FML A++++ S ++ P Q +++ F +K+P+ P H Sbjct: 182 GSVFMLIALLLLYDAAPGHSFAMADMAAGGAELPVKTQILVFLGLLLGFGVKMPIVPLHG 241 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP+ S+ L+GI+LKMG YG IR L P A Q + L+LI+++Y + Sbjct: 242 WLPLAHVEAPSPISILLSGILLKMGAYGLIRAAATL-PAAVQALQDWLALLALISLLYGA 300 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 +++ QTD+K +IAYSSI+HMG V +GI + +G+ GA+ QM++HGL + LF +G++ Sbjct: 301 VLAWRQTDLKAMIAYSSISHMGVVLLGIAALNPAGLSGAVTQMVAHGLAAGLLFLLIGLL 360 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R HTRD+ AYG L + PR+AV ++ +A++GLPG++GF+ E V++ + Sbjct: 361 YERTHTRDLGAYGSLNRSAPRFAVAIVFTLLASVGLPGSAGFMAELQVLVGAYARWGGWL 420 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSK-----CEKVQQLKDLSLRERCMVYPIAVLTVFF 465 VL S G+++SA Y+L R + G + V DL E + + Sbjct: 421 VLLSIGILISAAYALRAIRCLSTGPERPFAGAAAGVTAFADLKRSESAAAGLLIAGILGI 480 Query: 466 GIYPVPIRDTFSVPLSSIIEN 486 G YP P+ + ++ ++ Sbjct: 481 GFYPAPLLSLMASSVARLVRQ 501 >gi|213136399|gb|ACJ43930.1| NADH dehydrogenase subunit 4 [Ommatotriton vittatus] Length = 459 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 136/392 (34%), Positives = 220/392 (56%), Gaps = 15/392 (3%) Query: 50 FVWSVFDKGRSSFQMIEYYHWIDY------FCSYHLGVDGISILLVVLTTFLTPFCILSS 103 ++W+ F S M+ W++ S ++ +D IS L+VLT +L P L+S Sbjct: 22 WLWTYFLTNSSIIAMMSLI-WLNLPSEFSTLTSMYMSIDPISSPLLVLTCWLLPLMTLAS 80 Query: 104 WKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-S 158 ++ N R Y++ +L++ +I AF S ++++FYI FEA+LIP +II WG + Sbjct: 81 QNHLKNNPLSRQRTYLVTLTLLQTSLIIAFSSTELIMFYIAFEATLIPTLIIITRWGNQT 140 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--IIDLYAMSKFPFSIQYWMWIAFF 216 ER+ A F YT GS+ +L A++ + + S II++ + + +W+A Sbjct: 141 ERLNAGTYFLFYTLAGSLPLLVALLTLQNSLGSLSLMIINMMEPTVAQTYVDKILWLACL 200 Query: 217 CSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAP 276 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG IR L L PL + P Sbjct: 201 LAFMVKMPLYGTHLWLPKAHVEAPVAGSMILAAVLLKLGGYGIIRITLLLTPLTKEMSYP 260 Query: 277 VIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSH 336 L+L ++ SL+ M QTD+K LIAYSS++HMG V I + GA+ M+SH Sbjct: 261 -FMVLALWGVVMTSLICMRQTDLKSLIAYSSVSHMGLVIAAIMIQTPWSLTGAIILMISH 319 Query: 337 GLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEF 396 GL+SSALF + Y+R H+R + G +P A ++ ++NM LP + GE Sbjct: 320 GLISSALFCLANLNYERTHSRTLLLLRGAQAMLPLMATSWLIVNLSNMALPPSMNLWGEL 379 Query: 397 LVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +++S+F S ++ G +++A Y+L++Y Sbjct: 380 TIMVSLFNWSPWTILITGIGTLITASYTLYMY 411 >gi|302035613|ref|YP_003795935.1| NADH-quinone oxidoreductase membrane subunit M [Candidatus Nitrospira defluvii] gi|300603677|emb|CBK40008.1| NADH-quinone oxidoreductase, membrane subunit M [Candidatus Nitrospira defluvii] Length = 551 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 152/498 (30%), Positives = 251/498 (50%), Gaps = 40/498 (8%) Query: 6 LSIVTFLPFLGVFVILFSS--YLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 L I+ F PF+G ++F S L R G+A G + ++ I S++++ +D + +Q Sbjct: 6 LLIILFAPFVGALALIFVSNRQLSLVR----GIAAGSAFVSLIASVYLFYAYDPLKGGYQ 61 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 I+ W S HLGVDGI LV+ + L I SW I++ +E+ I L+L Sbjct: 62 FIQRIEWSRQLGISLHLGVDGIGTPLVLASGILLFAGIFVSWH-IKDRVKEFYIWILILA 120 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-------------------------- 156 + IG F+SLD+ Y F+E S+IPM++++G+WG Sbjct: 121 AATIGVFMSLDLFFLYFFYEMSVIPMYLLLGMWGSHTKKYLEMTDAEGLKQRDSVGFIFN 180 Query: 157 --GSERIYAAYKF--FLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMW 212 + + YAA K FL F + M ++ T I+ L + F + +W Sbjct: 181 FGANSKEYAAMKLVLFLSAFAVAALMGILLIYKFSGLNTFDILVLREQAHFSGPLATLIW 240 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 + F FA P++P H+W P H AP A S+ AG+++K+G + IR + P ++ Sbjct: 241 LLIFFGFASIAPIWPLHSWSPVGHAAAPAATSMLHAGVLMKLGHFSIIRVAFEILPETTR 300 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 P+ L + +IIY LV+ D K +I YSS +HMGYV +G+ + + GA+ Sbjct: 301 ELMPIAAVLCIFSIIYGGLVAYYAKDTKYVIGYSSSSHMGYVFLGMAALDYISLSGAVIY 360 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 M +H + + LF G +YD+ HTRDI + GGL + MP + ++ MA++G+PGT F Sbjct: 361 MFAHAMATGMLFAMAGWVYDQTHTRDIPSLGGLSNRMPFISAAFVIGCMASIGMPGTVNF 420 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD-LSLRE 451 I E ++I+ + V+A G+VL+ Y + R + +G S EK D +++ + Sbjct: 421 IAEVMIIVGSWNKYPFQVVVAVLGIVLTMAYLFKMMRGLFYG-SMAEKYSHSHDAVTVVD 479 Query: 452 RCMVYPIAVLTVFFGIYP 469 R + + +++ FGI+P Sbjct: 480 RMPLLIMITVSISFGIFP 497 >gi|213136343|gb|ACJ43878.1| NADH dehydrogenase subunit 4 [Taricha rivularis] Length = 459 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 147/441 (33%), Positives = 235/441 (53%), Gaps = 16/441 (3%) Query: 50 FVWSVFDKGRSSFQMIEYYHWID------YFCSYHLGVDGISILLVVLTTFLTPFCILSS 103 ++W+ F S+ M+ W++ + H+ VD IS L+VLT +L P L+S Sbjct: 22 WLWTHFTMNSSAIAMLSLT-WLNIPFESSMMTNTHMTVDSISSPLLVLTCWLLPLMALAS 80 Query: 104 WKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-S 158 ++ N R Y+I +L++ +I AF S ++++FYI FEA+LIP +II WG + Sbjct: 81 QSHLKTNPLSRQRTYLIMLTLLQASLIMAFSSTELIMFYIAFEATLIPTLIIITRWGNQA 140 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI--IDLYAMSKFPFSIQYWMWIAFF 216 ER+ A F YT GS+ +L A++ + + S+ I++ + MW+A Sbjct: 141 ERLNAGTYFLFYTLAGSLPLLIALLTLQASLGSLSLALINITEPAAMLNYTSKAMWLACL 200 Query: 217 CSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAP 276 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG IR L PL + P Sbjct: 201 LAFMVKMPLYGTHLWLPKAHVEAPVAGSMILAAVLLKLGGYGIIRITTILTPLTKEMSYP 260 Query: 277 VIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSH 336 I L+L +I SL+ M QTD+K LIAYSS++HMG V I + GA+ M+SH Sbjct: 261 FII-LALWGVIMTSLICMRQTDLKSLIAYSSVSHMGLVIASIMIQTPWSLTGAIILMISH 319 Query: 337 GLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEF 396 GL+SSALF + Y+R H+R + G +P A ++ ++NM LP + GE Sbjct: 320 GLISSALFCLANLNYERTHSRTLLLLRGAQTILPLMATWWLMANLSNMALPPSINLWGEL 379 Query: 397 LVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 +++S+F S ++ G +++A Y+L++Y G + + L RE ++ Sbjct: 380 AIMVSLFNWSPWTLLITGTGTLITASYTLYMYLMTQRGPTP-PHLNLLPPSHTREHLLMT 438 Query: 457 PIAVLTVFFGIYPVPIRDTFS 477 + + P + TFS Sbjct: 439 MHLAPMLLLILNPALVSGTFS 459 >gi|56421881|ref|YP_149199.1| NADH dehydrogenase subunit M [Geobacillus kaustophilus HTA426] gi|56381723|dbj|BAD77631.1| NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Geobacillus kaustophilus HTA426] Length = 525 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 160/523 (30%), Positives = 271/523 (51%), Gaps = 48/523 (9%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 FLS++ F P LG+ +++F + G A + + I +LF + +G ++ Sbjct: 3 FLSLLVFSPLLGIVLLMFVRKTDERMIQWLGTAATVPPL--ILALFAFIQSGRGFRLERL 60 Query: 65 IEYYHWID-----------YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 E W+ Y Y LG+DG+S++ +VLT L L+S E + Sbjct: 61 DEARDWVRLADLPFLTDAAYVIRYELGIDGLSLVFIVLTAVLATLAALASMLVKTEK-KG 119 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y + L LE ++G F + + + F++F E +L+ MF+++G WGG ER AAY + LY Sbjct: 120 YFLWLLALEIGMLGVFSAANFVWFFLFLEVTLVAMFLLVGKWGGFERERAAYSYLLYNGL 179 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI-----------QYWMWIAFFCSFAIK 222 GS +L I V+ T++ L+ M P + + W+ +FA+K Sbjct: 180 GSALLLVVIAVLLARTGTANFALLHEMLHNPAAEGQLIAPLTEEGRRWLLGGLLLAFAVK 239 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +P PFH WL HV+AP + AG++LK+ YG IRF + LFP + FA V+ Sbjct: 240 LPAVPFHCWLIRVHVEAPPPVVMLHAGVLLKIAAYGMIRFGVGLFPDEFRSFAGVLALFG 299 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 +I ++Y +L+++ Q ++K+++AYSS++HMG V IG+ + ++G++GA+FQ ++HGL+S+ Sbjct: 300 VINVLYGALLALRQRELKRVLAYSSVSHMGVVLIGLGALNEAGIQGAVFQSVAHGLISAL 359 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 F VGV+ R+ T DI GGL MP ++ ++ +A +GLPG +GF+GEF + + Sbjct: 360 SFLLVGVLAHRMGTTDINRLGGLTKAMPLFSGYLLTAALALLGLPGLAGFVGEFTSFLGL 419 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFG-------------------VSKCEKVQQ 443 FQ +A + + G++ +A+YSL + FG S E Sbjct: 420 FQTKPALAAVGALGLIFAAVYSLKAVLDITFGRPRDRREAVMGWREPQASAASLGEPQGG 479 Query: 444 LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIEN 486 + DL +E + + L V G+YP + PL+++++ Sbjct: 480 VVDLQGKEAVPAFILVALIVAVGVYP----QLLAAPLTAVVKT 518 >gi|296099636|gb|ADG95240.1| NADH dehydrogenase subunit 4 [Polypterus sp. golden dust] Length = 459 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 204/356 (57%), Gaps = 7/356 (1%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L++LT +L P IL+S I R Y+ + L++++I AF + ++ Sbjct: 57 MATDMVSTPLIILTCWLLPLMILASQNHISSEPINRQRSYITLLVSLQTLLIMAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 117 ILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLYIYNTAGSLS 176 Query: 194 IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++ + ++ P + ++W A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVSMNLITIHPSTWANTFLWAACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG IR + L P P I L+L II + M Q+D+K LIAYSS++HMG Sbjct: 237 KLGGYGMIRMTIMLEPTTKSLAYPFII-LALWGIIMTGSICMRQSDMKSLIAYSSVSHMG 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V GI GA+ M++HGL SSALF Y+R H+R + G+ MP Sbjct: 296 LVASGILIQTPWSFTGAIILMIAHGLTSSALFCLANTTYERTHSRTLLLARGMQIIMPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A ++ ++ANM LP +GE ++++S+F S +L G +++A YSL+L+ Sbjct: 356 ATWWLIISLANMALPPLPNLMGELMIMVSMFNWSTWTILLTGMGTLITASYSLYLF 411 >gi|283780918|ref|YP_003371673.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pirellula staleyi DSM 6068] gi|283439371|gb|ADB17813.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pirellula staleyi DSM 6068] Length = 703 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 114/277 (41%), Positives = 172/277 (62%), Gaps = 13/277 (4%) Query: 206 SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 S+Q+W +I F F IK+P PFHTWLP+AHV+APT S+ LAG++LKMGGYG IR P Sbjct: 364 SLQWWAFILLFIGFIIKVPSVPFHTWLPDAHVEAPTPISMILAGVLLKMGGYGIIRICYP 423 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT--IGIFSGMK 323 + P ++ L +++++Y + ++ Q D K+++AYSS++HMGYVT +G++S Sbjct: 424 ICPAGGYELMYLVCTLGVVSMVYGAFAALAQKDFKRMVAYSSVSHMGYVTLGLGVWSATA 483 Query: 324 S----------GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 GV+GAMFQM+ HG+ S+ +FF VG+IYDR+H R++ +GGL MP Y Sbjct: 484 GNYYNADYWNMGVQGAMFQMIGHGVSSAGMFFMVGIIYDRVHHRNLEEFGGLFGKMPVYT 543 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 + M A +GLPG GF GE V++SV++ S +AV ++ V+L+A Y LW ++V Sbjct: 544 AMAMGLFFAALGLPGLCGFPGEVFVVLSVWKFSMVLAVFSASVVILTAAYILWAMQRVYL 603 Query: 434 GVS-KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G K L +LRE + + + V + FG++P Sbjct: 604 GAEYKGPHGDHLHPTNLRENMIGFTLLVFAIIFGVFP 640 Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 77/202 (38%), Positives = 112/202 (55%), Gaps = 9/202 (4%) Query: 5 FLSIVTFLPFLGVFVI--LFSSYLGCGRRSFFGVALG--ISTINFIFSLFVWSV---FDK 57 L+ + FLP L +I L S+ R GV + I T+ + W FD Sbjct: 8 LLTAIVFLPALSAILIALLPSNKPDLIRFVTLGVTIAVLILTVLGLMDPLGWQASTKFDV 67 Query: 58 GRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI 116 ++ Q WI F Y +G+DGIS LV+LT F++ + +SW SI + + Y I Sbjct: 68 AQAEMQSAFNVAWIPSFDIEYFMGMDGISFPLVMLTAFVSVLAMGASW-SITKAVKGYCI 126 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 FL+LE+ ++G FL+LD LFY+F+E L+PM+ +IGVWGG + YAA KFFLYT GS+ Sbjct: 127 LFLLLETGMLGVFLALDFFLFYVFWEVMLLPMYFLIGVWGGPRKEYAAIKFFLYTLAGSV 186 Query: 177 FMLFAIVVMCWEKKTSSIIDLY 198 ML AI+++ + + D Y Sbjct: 187 LMLVAILMLYFSSDLRVLSDEY 208 >gi|226463942|ref|YP_002727997.1| NADH dehydrogenase subunit 4 [Chamaeleo dilepis] gi|124055046|gb|ABM90418.1| NADH dehydrogenase subunit 4 [Chamaeleo dilepis] Length = 450 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 134/426 (31%), Positives = 225/426 (52%), Gaps = 13/426 (3%) Query: 32 SFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVL 91 + +A I I SL +S+ G S Q ++ + + +L +D IS L+ L Sbjct: 10 TLIPLATTIKKNILIPSLLTYSII-LGTLSLQWLKTPMTLIKHSNPYLSIDQISAPLLTL 68 Query: 92 TTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 + +L P +L+S + Q R +++ L+++++ A S +++LF+I FEA+LIP Sbjct: 69 SYWLLPIAMLASQNHLKYTTQTQMRMFLVCLTTLQTLLVMALSSTNLVLFFIMFEATLIP 128 Query: 148 MFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS 206 +II WG ER+ A F YT S+ +L A++++ + + + M+ P + Sbjct: 129 TMMIITRWGSQKERLMAGMYFMFYTLISSMPLLIALLILNHKMDNLNTTLMPMMTHKPNT 188 Query: 207 IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG +R + P+ Sbjct: 189 T---MWLACTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMR-ISPM 244 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 L + P I L+L +I SL+ + Q D+K LIAYSS++HMG V S + Sbjct: 245 LCLTKTLYYPFII-LALWGMIMTSLICLRQPDLKSLIAYSSVSHMGLVVTATMIQTPSSL 303 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 GAM M++HG+ SS LF ++Y+R HTR + G+ +P +V + NM + Sbjct: 304 TGAMMLMVAHGITSSMLFCLANMMYERTHTRTLTMMQGMQTTLPLMTAFWLVANLTNMAI 363 Query: 387 PGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD 446 P T +GE + ++F S +L ++A+YS++++ + G K +K + Sbjct: 364 PPTINLLGEITITTTMFNWSPPTLILTGSAATITAIYSMYMFSAIQQG--KTQKDMMITP 421 Query: 447 LSLRER 452 RE Sbjct: 422 AQTREH 427 >gi|218157409|ref|YP_002364636.1| NADH dehydrogenase subunit 4 [Trichiurus japonicus] gi|163311610|gb|ABY26769.1| NADH dehydrogenase subunit 4 [Trichiurus japonicus] Length = 456 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 135/359 (37%), Positives = 213/359 (59%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSW---KSIQENFREYMIAFLV-LESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S K+ E+ + I+ L L+ +I AF + + Sbjct: 56 YLGTDPLSTPLIVLTCWLLPLMILASQNHTKTEPESRQRMYISLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP ++I WG +ER+ A F YT S+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLILITRWGNQAERLNAGAYFLFYTLAASLPLLVALMILQNNTGTL 175 Query: 193 SIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 SI+ + YA M +S + W W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SILTMQYAPPMQMSAYSTKIW-WVACLAAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR ++ L P + P I F +L +I S + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRMMIMLEPTTKELSYPFIIF-ALWGVIMTSSICLRQTDLKALIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V I + G+ GA+ M++HGL SSALF Y+R HTR + G+ + Sbjct: 294 HMGLVAAAILTQTPWGLSGAVILMIAHGLTSSALFCLANTNYERTHTRTMLVARGMQVLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ ++AN+ LP IGE ++++S+F S +L G +++A YSL+++ Sbjct: 354 PLMTAWWLIASVANLALPPLPNLIGELMILVSLFNWSPWTLLLTGLGTLITAAYSLYMF 412 >gi|21450036|ref|NP_659220.1| NADH dehydrogenase subunit 4 [Ranodon sibiricus] gi|21388587|emb|CAD12081.1| NADH4 [Ranodon sibiricus] Length = 457 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 210/361 (58%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +LG+D +S L++LT +L P IL+S ++ N R Y+I ++L++ +I AF + Sbjct: 53 NKYLGLDYLSSPLLILTCWLLPMMILASQNHLKNNPINRQRTYIIMLIILQTSLIMAFAA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ M Sbjct: 113 TEMIMFYITFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTMQNSIG 172 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S+ ++ FS + W W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 SLSLFLFELINPLQLMLFSNKIW-WVACLLAFMVKMPLYGMHLWLPKAHVEAPIAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L P++ + P I L+L +I ++ M QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGILRISIILTPMSKELSYPFII-LALWGVIMTGMICMRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 291 VSHMGLVIAAALIQTPWSFTGAIILMISHGLISSALFCLANMNYERTHSRTLLLVRGAQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P ++ ++NM LP + GE +++S+F SN ++ G +++A Y+L++ Sbjct: 351 MLPLMTTWWLLTNLSNMALPPSLNLWGELTIMVSLFNWSNWTILITGTGTLITASYTLYM 410 Query: 428 Y 428 Y Sbjct: 411 Y 411 >gi|239997645|gb|ACS37153.1| NADH dehydrogenase subunit 4 [Praslinia cooperi] Length = 458 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 134/388 (34%), Positives = 213/388 (54%), Gaps = 8/388 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAF 129 F + L D +S L+VLT +LTP I++S K + + R ++ F++L++ +I AF Sbjct: 51 FTNKWLATDQLSTPLMVLTCWLTPMMIIASQKHMFNFPTNHQRMFISTFILLQTALIMAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + E Sbjct: 111 SSTELILFYIMFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLLGSLPLLVALLSLQNE 170 Query: 189 KKTSSIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S+I++ + P W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 171 VGSLSMINMQFFQQIKPTQTNNIWWAGCLIAFMVKMPLYGLHLWLPKAHVEAPIAGSMIL 230 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R + L P + P + LSL II S + M QTD+K LIAYSS Sbjct: 231 AAILLKLGGYGIMRISIMLTPFTKESAYPFLI-LSLWGIIMTSSICMRQTDLKSLIAYSS 289 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V G GAM M++HGL SS LF Y+R H R + GL Sbjct: 290 VSHMALVISATLIQTPWGFTGAMILMIAHGLTSSMLFCLANTNYERTHNRTLLLTRGLQT 349 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++ + NM LP ++ + E +++ ++F SN +L G++++ALYSL + Sbjct: 350 ILPLMTMWWLLSNLTNMALPPSTNLMAEIMIVSTLFNWSNMTIILTGVGIIMTALYSLHM 409 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G ++ + + RE ++ Sbjct: 410 FLMTQRGPTQ-NHINSISPSYTREHLLM 436 >gi|213136147|gb|ACJ43696.1| NADH dehydrogenase subunit 4 [Neurergus kaiseri] Length = 459 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 219/388 (56%), Gaps = 13/388 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ VD +S L+VLT +L P L+S ++ N R Y+I +L++ +I AF S + Sbjct: 55 YMSVDPVSSPLLVLTCWLLPLMTLASQNHLKNNPTSRQRIYLIMLTLLQASLIMAFSSTE 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T Sbjct: 115 LIMFYISFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLTLQNSIGTL 174 Query: 193 SIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ + M P + +M W+A +F +K+PM+ H WLP AHV+AP AGS+ LA Sbjct: 175 SMTLITTMQ--PMMMHSYMDKILWLACLLAFMVKMPMYGAHLWLPKAHVEAPVAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR + L PL + P + L+L ++ SL+ M QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGIIRITMILTPLEKEMSYPFMV-LALWGVVMTSLICMRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V I + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 292 SHMGLVIAAIMIQTPWSLTGAIILMISHGLISSALFCLANLNYERTHSRTLLLMRGAQAT 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 MP A + + ++NM LP + GE +++S+F S ++ G++++A Y+L+++ Sbjct: 352 MPLMATLWLFTNLSNMALPPSMNLWGELTIMISLFNWSPWTMLITGTGILITASYTLYMF 411 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVY 456 G + + Q RE +++ Sbjct: 412 LMTQRG-PIPQYLNQTSPTHTREHLLIF 438 >gi|298367385|gb|ADI79584.1| NADH dehydrogenase subunit 4 [Gekko gecko] Length = 456 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 140/386 (36%), Positives = 208/386 (53%), Gaps = 13/386 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV----LESMVIGAFLSLDM 134 L +D IS LV+++ +L P ++S + AFL L++ +I F + D+ Sbjct: 57 LALDNISTPLVIMSAWLLPLMAIASQHHLANEPTNRKRAFLATCAALQTTLIMTFTTTDL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FE +LIP ++I WG +ER+ A F YT GS+ +L AI+ + + SS Sbjct: 117 IMFYIMFETTLIPTLILITRWGAQAERLNAGMYFLFYTLSGSLPLLIAILTLQTKYNHSS 176 Query: 194 IIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++ L K + MW+A +F IK+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 177 MLMLMLTQKELLTTNSDMLMWLACMMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVL 236 Query: 252 LKMGGYGCIRFLLPLFP--LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 LK+GGYG IR LL L P L + P I LSL +I SL+ + QTD+K +IAYSSI+ Sbjct: 237 LKLGGYGIIRILL-LLPNHLTQTMYLPFI-VLSLWGMIMTSLICLRQTDLKSIIAYSSIS 294 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V + GAM M++HGL SSALF Y+R+HTR + GL M Sbjct: 295 HMGLVITATMIATPWSITGAMILMIAHGLTSSALFCLANTNYERIHTRTLILTRGLTFVM 354 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + F++ N+ LP T +GE L+I+S F + T L +++ YSL+++ Sbjct: 355 PLMMTWWLAFSLMNLALPPTINLLGELLIIISTFNWNMTTIFLTGAATLITTTYSLYIFI 414 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 +K K L RE ++ Sbjct: 415 TTQRTNTKPNKT--LTPTQTREHLLM 438 >gi|38638385|ref|NP_943626.1| NADH dehydrogenase subunit 4 [Huso huso] gi|38304809|gb|AAR16151.1| NADH dehydrogenase subunit 4 [Huso huso] Length = 460 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 137/359 (38%), Positives = 208/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S I R Y+ + L+ +I AF + + Sbjct: 56 YLGTDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRTYITLLVSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E + Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKELGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M P ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLIIQYMQPAPLCTWADKIW-WAACLIAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L P + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMIIMLEPTSKNLAYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+RLH+R + G+ + Sbjct: 294 HMGLVVAGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERLHSRTLLLARGMQAVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I SVF SN +L G +++A YSL++Y Sbjct: 354 PLMATWWFIANLANLALPPLPNLMGELIIISSVFNWSNWTIILTGGGTLITASYSLYMY 412 >gi|45387969|ref|NP_990959.1| NADH dehydrogenase subunit 4 [Acipenser stellatus] gi|44843599|emb|CAE51041.1| NADH dehydrogenase subunit 4 [Acipenser stellatus] Length = 460 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 138/359 (38%), Positives = 209/359 (58%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S I R Y+ + L+ +I AF + + Sbjct: 56 YLGADPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRTYITLLVSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E + Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKELGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M P ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLIIQYMQPAPLCTWADKIW-WAACLIAFLVKLPLYGAHLWLPKAHVKAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L P AS+ A L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMIIMLEP-ASKNLAYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+RLH+R + G+ + Sbjct: 294 HMGLVVAGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERLHSRTLLLARGMQAVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I S+F SN +L G +++A YSL++Y Sbjct: 354 PLMATWWFIANLANLALPPLPNLMGELVIITSMFNWSNWTIILTGGGTLITASYSLYMY 412 >gi|240266608|ref|YP_002970989.1| NADH dehydrogenase subunit 4 [Polychrus marmoratus] gi|239735254|dbj|BAH70469.1| NADH dehydrogenase subunit 4 [Polychrus marmoratus] Length = 460 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 198/359 (55%), Gaps = 8/359 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + + VD IS L+ L+ +L P L+S +Q + +++ L++ +I F Sbjct: 52 FSNQLMTVDPISAPLLTLSCWLLPLMTLASMHHLQHEPLHRKQTFLLTLSTLQTFLIMTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +++LFYI FEA+LIP +II WG +ER+ A F YT S+ +L AI+ + + Sbjct: 112 TTTNLVLFYIMFEATLIPTLIIITRWGNQAERLMAGTYFLFYTLTSSLPLLIAILYLNSQ 171 Query: 189 KKTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 +S + + + P +W A +F +K P++ H WLP AHV+AP AGS+ Sbjct: 172 NTHTSTLLMQLTQPYLNPSESNTMLWFACLMAFMVKWPLYGLHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG IR L L PL + + P+I L+L II S + + QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGIIRITLTLTPLTQKLYYPMII-LALWGIIMTSTICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG VT + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVTAACLIQTPWSMAGAIILMIAHGLTSSMLFCLANTNYERTHSRTMILAQGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++ N+ LP T +GE L+I S+F S T +L G +++A YSL Sbjct: 351 LILPLMTTWWFLASLTNLALPPTINLMGELLIITSLFNWSQTTILLTGLGTLITASYSL 409 >gi|288909103|dbj|BAI77335.1| NADH dehydrogenase subunit 4 [Acentrophryne dolichonema] Length = 460 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 219/384 (57%), Gaps = 11/384 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDML 135 G D +S L+VLT +L P IL+S + R Y++ L+ +I AF + ++L Sbjct: 58 GTDPVSAPLLVLTCWLLPLMILASQNHLACEPWNRQRMYLMLLTTLQFFLIMAFGATELL 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FY+ FEA+LIP V+I WG ++R+ A L+T GS+ +L A++++ +T S+ Sbjct: 118 MFYVMFEATLIPTLVLITRWGNQTQRLNAGTYLLLFTLVGSLPLLVALLILRNNTETLSM 177 Query: 195 IDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + L S P F+ + W W + +F +K+PM+ H WLP AHV+AP AGS+ LA I+ Sbjct: 178 LILPYSSVPPLNLFTDKLW-WASCLLAFLVKMPMYGVHLWLPKAHVEAPVAGSMVLAAIL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR L+ L PL + P I F +L +I A + ++QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGMIRMLICLEPLTKELSYPFIIF-ALWGLIMAGSICILQTDLKSLIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V G+ G+ GAM M++HGL SSALF Y+R H+R + G+ +P Sbjct: 296 GLVIGGVLIQTPWGLTGAMTLMIAHGLTSSALFCLANTNYERTHSRTMVLVRGMQLILPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++AN+ LP +GE +++ S+F S L G +++A YSL+++ V Sbjct: 356 AATWWLIASLANLALPPLPNLMGELMILTSLFNWSPWTIALTGAGTLITAAYSLYMFITV 415 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S + L+ RE M+ Sbjct: 416 QRG-STPPHIFGLEPTHTREHLMM 438 >gi|84488629|ref|YP_448825.1| NADH dehydrogenase subunit 4 [Psammobates pardalis] gi|67005642|gb|AAY62439.1| NADH dehydrogenase subunit 4 [Psammobates pardalis] Length = 459 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 207/371 (55%), Gaps = 14/371 (3%) Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMI 116 S Q ++ + F +Y+LGVD IS L+ L+ +LTP IL+S + R ++ Sbjct: 38 SLQWLKPSSELTTFSNYYLGVDPISAPLLTLSCWLTPLMILASQNHLTTEPTPRKRTFIT 97 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGS 175 ++L+ +I AF ++++++F+I FEA+LIP VII WG ER+ A F YT GS Sbjct: 98 TIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGS 157 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQYWM----WIAFFCSFAIKIPMFPFHT 230 + +L A+ M + T SI Y M P W W+A +F IK+P++ H Sbjct: 158 LPLLVALSFMQTQNGTLSI---YMMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHL 214 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP AGS+ LA ++LK+GGYG IR + L PL+ P + ++L +I S Sbjct: 215 WLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPFMV-MALWGVIMTS 273 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + + QTD+K LIAYSS++HMG V + + GA+ M++HG+ SS LF Sbjct: 274 SICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTN 333 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R H+R + + ++P + ++ ++ NM LP T +GE +I+S+F SN Sbjct: 334 YERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITI 393 Query: 411 VLASFGVVLSA 421 ++ G +++A Sbjct: 394 LMTGLGTLITA 404 >gi|5565828|gb|AAD45217.1| NADH dehydrogenase subunit 4 [Marmota flaviventris] Length = 408 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 135/355 (38%), Positives = 206/355 (58%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + QE + Y++ + L+S +I F + ++++F Sbjct: 45 DPLSSPLLILTAWLLPLMIMASQSHLAQEPLIRKKLYILMLISLQSFLIMTFSATELIMF 104 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K T S Sbjct: 105 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALIYI--QKSTGSLNF 162 Query: 194 IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 II +Y S P S + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 163 IISVYQSSVLPMSWTNHILWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 222 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG IR L P+ P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 223 KLGGYGMIRISTLLHPITINMAYPFVM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 281 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 282 LVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMMLARGLQSILPLM 341 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ T+ N+ LP + IGE +IM+ F SN +L F ++++ALYSL++ Sbjct: 342 ATWWVLATLTNLALPPSINLIGELFIIMASFTWSNISIILTGFNMLITALYSLYM 396 >gi|15451799|ref|NP_203723.1| NADH dehydrogenase subunit 4 [Pantodon buchholzi] gi|15430533|dbj|BAB64399.1| NADH dehydrogenase subunit 4 [Pantodon buchholzi] Length = 460 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 136/375 (36%), Positives = 213/375 (56%), Gaps = 17/375 (4%) Query: 69 HWIDY-------FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIA 117 HW+ + + +L D +S L+VLT +L P IL+S I+ R Y++ Sbjct: 40 HWLKWDTEVGWTTSNSYLATDPLSTPLLVLTCWLLPLMILASQNHIRSEPMNRQRSYIML 99 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSI 176 ++L+S +I AF + +M++FYI FEA+LIP +II WG +ER+ A F YT GS+ Sbjct: 100 LILLQSFLIMAFGATEMIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSL 159 Query: 177 FMLFAIVVMCWEKKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 +L A++++ T S++ L ++ ++ W W + +F +K+P++ H WLP Sbjct: 160 PLLVALLILHKNTGTLSVLTLQYSPNLNLHTWANNIW-WASCLMAFLVKMPLYGIHLWLP 218 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 AHV+AP AGS+ LA ++LK+GGYG +R ++ L P+ + P I L+L II + Sbjct: 219 KAHVEAPVAGSMILAAVLLKLGGYGMMRIMVVLTPMTKELAYPFII-LALWGIIMTGSIC 277 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTD+K LIAYSS++HMG V GI G GA+ M++HGLVSSALF Y+R Sbjct: 278 LRQTDLKSLIAYSSVSHMGLVAAGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYER 337 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 +H+R + G+ +P A + +AN+ LP +GE +I S F S VL Sbjct: 338 MHSRTLLLARGMQTILPLMASWWFISNLANLALPPLPNLMGELTIISSAFNWSYWTIVLT 397 Query: 414 SFGVVLSALYSLWLY 428 G +++A YSL+++ Sbjct: 398 GLGTLITAAYSLYMF 412 >gi|269955289|ref|YP_003325078.1| proton-translocating NADH-quinone oxidoreductase subunit M [Xylanimonas cellulosilytica DSM 15894] gi|269303970|gb|ACZ29520.1| proton-translocating NADH-quinone oxidoreductase, chain M [Xylanimonas cellulosilytica DSM 15894] Length = 527 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 161/505 (31%), Positives = 266/505 (52%), Gaps = 21/505 (4%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSY---LGCGRRSFFGVALGISTINFIFSLFVWSVFDK 57 M+ P+L+ + P + + LG GR VAL S + + + FD Sbjct: 1 MSFPWLTALIAWPLVAALATATTGRGRTLGAGRARQ--VALVGSLVELALGVGAFLAFDT 58 Query: 58 GRSS-FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF---R 112 R++ Q++E + WI SY +GVDG+++LLV L+ L P IL++WK + R Sbjct: 59 ARAAEHQLLETHRWIPSIGASYAVGVDGVALLLVGLSVGLVPLVILAAWKEQGGDLARLR 118 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYT 171 Y+ LVL+S ++ F + D+ LFY+ FEA LIP++ +IG +G G++R YAA KF LY+ Sbjct: 119 TYLATVLVLQSFMVAVFAARDVFLFYVLFEAMLIPVYFLIGGFGQGAQRRYAAVKFLLYS 178 Query: 172 FFGSIFMLFAIVVM-----CWEKKTSS-IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPM 225 G + ML A++ + E+ + ++D + + + M+ FF +FAIK P+ Sbjct: 179 LAGGLVMLVAVIALYLQVPAAERGPQTFLVDNLSGLELGTTAGRLMFCGFFLAFAIKAPL 238 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 P H+WLP+ A S L ++ K+G +G + LPLFP A+++ AP + L++++ Sbjct: 239 VPVHSWLPDVAENATPGTSTLLISVLDKVGTFGMLTLCLPLFPEAARWAAPAVVVLAVVS 298 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 I+Y +++++ QTD+ +LI Y+S++H G++ +GIF+ +G GA F ML+HG+ + ALF Sbjct: 299 ILYGAILAIGQTDLLRLIGYTSVSHFGFIVLGIFTFTATGTAGASFMMLNHGISTGALFL 358 Query: 346 CVGVIYDRLHTRD--IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 G + R R I YGGL P +V ++ LPG + F E LV + F Sbjct: 359 VAGFVIARHPERSQRIADYGGLRIAAPILGGSFLVAGLSAAALPGLATFGSEILVFLGAF 418 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGV--SKCEKVQQLKDLSLRERCMVYPIAVL 461 ++A VVL+A+Y L Y+++ G + ++ DL RER + + L Sbjct: 419 SAVQWAGIVAVPAVVLAAIYVLLTYQRIFTGTVPAGLSPDGRVPDLDGRERTVAGVLIAL 478 Query: 462 TVFFGIYPVPIRDTFSVPLSSIIEN 486 + G P P ++ IE Sbjct: 479 LLLLGFVPNLGLQYVDAPATTTIEQ 503 >gi|15451827|ref|NP_203710.1| NADH dehydrogenase subunit 4 [Osteoglossum bicirrhosum] gi|15430519|dbj|BAB64386.1| NADH dehydrogenase subunit 4 [Osteoglossum bicirrhosum] Length = 460 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 141/393 (35%), Positives = 214/393 (54%), Gaps = 15/393 (3%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGA 128 Y + +L D +S L+VLT +L P IL+S ++QE R Y+ + L+ +I A Sbjct: 51 YTLNQYLATDPLSTPLLVLTCWLLPLMILASQNHTLQEPINRQRSYITLLVFLQISLIMA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + ++++FY+ FE +LIP +II WG +ER+ A F YT GS+ +L AI++M Sbjct: 111 FGATEIIMFYVMFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVAILIM-- 168 Query: 188 EKKT---SSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 +K T S +I Y S P S + W W +F +K+P++ H WLP AHV+AP A Sbjct: 169 QKDTGTLSMLIIQYTKSAEPLSWANKIW-WTGCLLAFLVKMPLYGVHLWLPKAHVEAPIA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L PL + P I L+L +I + + QTD+K L Sbjct: 228 GSMVLAAVLLKLGGYGMMRITILLDPLTKELAYPFIV-LALWGVIMTGSICLRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V GI GA+ M++HGLVSSALF Y+R H+R + Sbjct: 287 IAYSSVSHMGLVASGILIQTPWSFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLT 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P + +AN+ LP +GE +I S+F S +L G +++A Sbjct: 347 RGLQTILPLMTTWWFIANLANLALPPLPNLMGELAIITSMFNWSPWTIILTGLGTLITAG 406 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 YSL+++ G + + L RE ++ Sbjct: 407 YSLYVFLMTQRGPTPLHTI-SLSPTHTREHLLM 438 >gi|119360661|ref|YP_913493.1| NADH dehydrogenase subunit 4 [Esomus metallicus] gi|119225187|dbj|BAF41554.1| NADH dehydrogenase subunit 4 [Esomus metallicus] Length = 460 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 216/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S I+ R Y++ L++++I AF + Sbjct: 54 SMYMAADPLSTPLLVLTCWLLPLMILASQYHIKPEPLNRQRTYIMLLTSLQTLLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLTAGTYFLFYTLAGSLPLLIALLLM--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLTLQYTQPLMENLWTHKIWWAGCLIAFLVKMPLYGMHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGTICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILTQTPWGFSGALILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE L+I ++F S +L G +++A YSL+ Sbjct: 351 IIFPLTATWWFIANLANLALPPLPNLMGELLIITTMFNWSPWTILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTPTHII-NLQPFHTREHLLM 438 >gi|326442826|ref|ZP_08217560.1| putative NADH dehydrogenase chain M [Streptomyces clavuligerus ATCC 27064] Length = 552 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 154/414 (37%), Positives = 228/414 (55%), Gaps = 32/414 (7%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQENFREYMI 116 S Q WI HLGVDGIS+ L+VLT LT C L S+ + + ++ Sbjct: 72 SRMQATTDISWIPALDVRIHLGVDGISLPLLVLTALLTFLCALYSYFRMPTGPSPKAFVA 131 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L S + F LD+LLF++ FE LIPM+ +IG WGG+ R AA+KF LYT GS+ Sbjct: 132 LLLLLASGTLATFAVLDLLLFFLAFEMVLIPMYFLIGRWGGAGRSPAAWKFILYTLLGSV 191 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 ML ++++ + T ++ L + S Q +A A+K PM+P H+WLP+ Sbjct: 192 VMLLGLLLIGLKSGTFDMVALATDNGRGLTASTQVVAVLAIGIGLAVKTPMWPLHSWLPD 251 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH APT GSV LAG++LKMG YG +R LLP+ P Q FAP + +++ I+Y SLV + Sbjct: 252 AHTAAPTVGSVLLAGVLLKMGTYGFVRILLPIAPEGMQTFAPYLAAFAVVGIVYGSLVCL 311 Query: 295 ------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL+++ LFF VG Sbjct: 312 ALAKEGAGGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITALLFFLVG 371 Query: 349 VIYDRLHTRDI---------FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 + +R T D+ YG PR ++ +A++GLPG +GF GE L + Sbjct: 372 AVKERYGTADLDTLAGAAGAALYG----RAPRLGGLLAFAAVASLGLPGLAGFWGEMLAL 427 Query: 400 MSVFQNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 F ++ T V+ +FG +L+A Y L + R+V G + + + Sbjct: 428 FGAFDPADGLSRPAFLTFMVIGAFGTLLTAAYLLIVVRRVCMGAHRPAAPEPPR 481 >gi|5835718|ref|NP_008532.1|ND4_15046 NADH dehydrogenase subunit 4 [Squalus acanthias] gi|6647628|sp|Q9ZZ45|NU4M_SQUAC RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|4186105|emb|CAA77058.1| NADH dehydrogenase subunit 4 [Squalus acanthias] Length = 460 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 137/391 (35%), Positives = 219/391 (56%), Gaps = 13/391 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F +++L +D +S L++LT +L P IL+S I R Y+ + L++ +I AF Sbjct: 52 FSNHYLAIDPLSAPLLILTCWLLPLMILASQNHISTEPIIRQRIYITLLISLQTFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 112 SATELIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLIGSLPLLVALLLM--Q 169 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 S+ + P S+ W W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 NDLGSLSMIIIQYPQPLSLSTWADKFWWTACLIAFLVKMPLYGVHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R ++ L PL + P + L++ +I S + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGMMRIIVMLNPLTKEMAYPFLI-LAIWGVIMTSSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V I GA+ M++HGLVSSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVAGAIMIQTPWSFAGAITLMIAHGLVSSALFCLANTNYERTHSRTLLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P A + +AN+ LP T +GE L+I S+F S+ +L GV+++A YS Sbjct: 349 IQVMLPLMATWWFIANLANLALPPTPNLMGELLIISSLFNWSSWTILLTGLGVLITASYS 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+++ G + + + L RE ++ Sbjct: 409 LYMFLMTQRGPAS-QHLLSLNPSYTREHLLL 438 >gi|8844996|ref|NP_059959.1| NADH dehydrogenase subunit 4 [Typhlonectes natans] gi|8650321|gb|AAF78159.1| NADH dehydrogenase subunit 4 [Typhlonectes natans] Length = 458 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 135/358 (37%), Positives = 203/358 (56%), Gaps = 7/358 (1%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + L +D S ++LT +LTP IL+S + N R Y+ + ++L+ + AF Sbjct: 51 FVTKWLAIDQFSAPPMILTCWLTPLMILASRNHLTANPLGRQRMYISSLIILQLTLTAAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S + ++FYI FE +LIP +II WG +ER+ A F YT GS+ +L AI+ Sbjct: 111 ASTEFIMFYIMFETTLIPTLIIITRWGTQTERLNAGTYFLFYTLLGSMPLLVAIMGFSSN 170 Query: 189 KKTSSIIDL-YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S+I++ +A P + W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 171 MGSLSMINMQFASLINPTTTNSIWWLACVLAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 230 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R + L P+A++ P I LSL II S + M Q+D+K LIAYSS Sbjct: 231 AAILLKLGGYGILRISVLLTPMATELIYPFII-LSLWGIIMTSSICMRQSDLKSLIAYSS 289 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V G+ GA+ M++HGL SS LF Y+R HTR + GL Sbjct: 290 VSHMALVISAALIQTPWGLTGAIVLMVAHGLTSSMLFCLANTNYERTHTRTMILTRGLQT 349 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 MP A+ ++ ++ NM +P +GE +I S+F S + A GV+++ALYSL Sbjct: 350 IMPLMALWWLLASLTNMAIPPFPNLMGELTIITSLFNWSYLTMLAAGAGVIITALYSL 407 >gi|294814436|ref|ZP_06773079.1| NADH dehydrogenase subunit NuoM2 [Streptomyces clavuligerus ATCC 27064] gi|294327035|gb|EFG08678.1| NADH dehydrogenase subunit NuoM2 [Streptomyces clavuligerus ATCC 27064] Length = 544 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 153/414 (36%), Positives = 229/414 (55%), Gaps = 32/414 (7%) Query: 60 SSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQENFREYMI 116 S Q WI HLGVDGIS+ L+VLT LT C L S+ + + ++ Sbjct: 64 SRMQATTDISWIPALDVRIHLGVDGISLPLLVLTALLTFLCALYSYFRMPTGPSPKAFVA 123 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 L+L S + F LD+LLF++ FE LIPM+ +IG WGG+ R AA+KF LYT GS+ Sbjct: 124 LLLLLASGTLATFAVLDLLLFFLAFEMVLIPMYFLIGRWGGAGRSPAAWKFILYTLLGSV 183 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 ML ++++ + T ++ L + S Q +A A+K PM+P H+WLP+ Sbjct: 184 VMLLGLLLIGLKSGTFDMVALATDNGRGLTASTQVVAVLAIGIGLAVKTPMWPLHSWLPD 243 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AH APT GSV LAG++LKMG YG +R LLP+ P Q FAP + +++ I+Y SLV + Sbjct: 244 AHTAAPTVGSVLLAGVLLKMGTYGFVRILLPIAPEGMQTFAPYLAAFAVVGIVYGSLVCL 303 Query: 295 ------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 D+K+LIAYSS+ HMG+V +GI + +GV GA+F ++HGL+++ LFF VG Sbjct: 304 ALAKEGAGGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITALLFFLVG 363 Query: 349 VIYDRLHTRDI---------FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 + +R T D+ YG PR ++ +A++GLPG +GF GE L + Sbjct: 364 AVKERYGTADLDTLAGAAGAALYG----RAPRLGGLLAFAAVASLGLPGLAGFWGEMLAL 419 Query: 400 MSVFQNSNTVA--------VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 F ++ ++ V+ +FG +L+A Y L + R+V G + + + Sbjct: 420 FGAFDPADGLSRPAFLTFMVIGAFGTLLTAAYLLIVVRRVCMGAHRPAAPEPPR 473 >gi|280978513|ref|YP_003345433.1| NADH dehydrogenase subunit 4 [Ilyophis brunneus] gi|271280391|dbj|BAI53246.1| NADH dehydrogenase subunit 4 [Ilyophis brunneus] Length = 460 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 134/389 (34%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S + R Y+ + L+ + AF + Sbjct: 54 NQYLATDPLSTPLLVLSCWLLPLMILASQNHMTYEPTSRQRSYITLLISLQIFLTMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ M + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAMQKDLG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ + S P ++ W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSLLSIQYTS--PLALYSWGDKVWWVGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGLMRMMVVLDPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S ++ G +++A YSL+ Sbjct: 351 MILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSPWTIIMTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTPSH-IMGLEPTHTREHLLI 438 >gi|5836054|ref|NP_008812.1|ND4_15104 NADH dehydrogenase subunit 4 [Mustelus manazo] gi|3582419|dbj|BAA33056.1| NADH dehydrogenase subunit 4 [Mustelus manazo] Length = 460 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 137/395 (34%), Positives = 216/395 (54%), Gaps = 21/395 (5%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L VD +S L++LT +L P IL+S I R Y+ + L+ +I AF Sbjct: 52 FSNQYLAVDPLSTPLLILTCWLLPLMILASQNHISPEPLTRQRTYISLLIFLQFFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M+LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ M Sbjct: 112 SATEMILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLIGSLPLLIALLFMQNN 171 Query: 189 K--------KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + S +LY+ + ++W W A +F +K+P++ H WLP AHV+AP Sbjct: 172 LGSLSMFIIQHSQYTNLYSWAD-----KFW-WTACIIAFLVKMPLYGVHLWLPKAHVEAP 225 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGS+ LA ++LK+GGYG +R ++ L PL + P + L++ ++ S + + QTD+K Sbjct: 226 IAGSMILAAVLLKLGGYGMMRIIIMLNPLTKEMAYPFLI-LAIWGVVMTSSICLRQTDLK 284 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 LIAYSS++HMG V I GA M++HGL+SSALF Y+R+H+R + Sbjct: 285 SLIAYSSVSHMGLVAAAILIQTPWSFAGATMLMIAHGLISSALFCLANTNYERIHSRTLL 344 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 G+ +P A + +AN+ LP + +GE +I S+F SN +L GV+++ Sbjct: 345 LARGIQIILPLMATWWFLANLANLALPPSPNLMGELFIITSLFNWSNWTLILTGSGVLIT 404 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 A YSL+++ G + + L RE ++ Sbjct: 405 ASYSLYMFLMTQRGPTSNHLI-SLNPSHTREHLLL 438 >gi|213136385|gb|ACJ43917.1| NADH dehydrogenase subunit 4 [Triturus marmoratus] Length = 459 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 133/388 (34%), Positives = 214/388 (55%), Gaps = 15/388 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 + H+ VD +S L+VLT +L P L+S ++ N R Y++ +L++ +I AF Sbjct: 52 TNTHMLVDPVSSPLLVLTCWLLPLMTLASQNHLKTNPLPRQRTYLVMLTLLQASLIIAFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM---- 185 S ++ LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 112 STELTLFYIAFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLTGSLPLLVALLTIQSSS 171 Query: 186 -CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 ++ +L + I +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 GSLSLILLNMANLTVAQAYTDKI---LWLACLLAFMVKMPLYGTHLWLPKAHVEAPVAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L PL + P + L+L ++ SL+ M QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGIIRVTMLLTPLTKEMSYPFVI-LALWGVVMTSLICMRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V I + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 288 YSSVSHMGLVIAAIMIQTPWSLTGAIILMISHGLISSALFCLANLNYERTHSRTLLLVRG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P A ++ ++NM LP + GE +++S+F S ++ G +++A Y+ Sbjct: 348 AQAVLPLMATWWLIANLSNMALPPSMNLWGELTIMVSLFNWSPWTILITGLGTLITASYT 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L+++ G + + Q+ RE Sbjct: 408 LYMFLMTQRGPTPLH-LGQITPSHTREH 434 >gi|84488702|ref|YP_448877.1| NADH dehydrogenase subunit 4 [Testudo marginata] gi|67005701|gb|AAY62494.1| NADH dehydrogenase subunit 4 [Testudo marginata] Length = 459 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 204/370 (55%), Gaps = 12/370 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F +++LGVD IS L+VL+ +LTP IL+S + R +M L+ +I AF Sbjct: 51 FSNHYLGVDRISAPLLVLSCWLTPLMILASQNHLTSEPISRKRTFMTTITFLQISLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE +LIP VII WG ER+ A F YT GS+ +L A+ M + Sbjct: 111 STTELIMFFIAFETTLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSYM--Q 168 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + ++ L P + W W A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 TQNGTLSTLMMQLNQPTMMTSWAHSMWWFALLTAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR +L L PL+ P + ++L +I S + + QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGIIRIMLTLNPLSKTLSYPFMA-MALWGVIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 288 YSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGLTSSMLFCLANTNYERTHSRMLLLTQN 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ ++ NM LP T +GE +I S+F SN ++ G +++A Y+ Sbjct: 348 MQLLLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATYT 407 Query: 425 LWLYRKVVFG 434 L++ +G Sbjct: 408 LYMLITTQWG 417 >gi|22298448|ref|NP_681695.1| NADH dehydrogenase subunit 4 [Thermosynechococcus elongatus BP-1] gi|22294628|dbj|BAC08457.1| NADH dehydrogenase subunit 4 [Thermosynechococcus elongatus BP-1] Length = 501 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 152/473 (32%), Positives = 256/473 (54%), Gaps = 16/473 (3%) Query: 3 LPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSF 62 LP L+++ LP +G ++ R VAL I+ + F SL++ + FD +S+ Sbjct: 8 LPMLTLLIVLPVIGALLMPL-----LPERVLRSVALVIAGLTFALSLWMLTQFDVHQSAL 62 Query: 63 QMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q E+ W+ +Y LGVDG+S+ L+VL TFLT + + K+ Q F Y + L Sbjct: 63 QFTEFVPWLLPLGLNYSLGVDGLSLPLIVLGTFLTLGVVFTGEKTGQRLF--YALVLLA- 119 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 + + GA + ++LLF++F+E L+P +++I +WGG R AA KF +YT I +L A Sbjct: 120 NAGITGALAAQNLLLFFLFYELELVPFYLLILIWGGQRREQAAVKFLIYTAVSGILVLAA 179 Query: 182 IVVMCWEKKTSSI--IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + M W S D+ P + Q + + F IK+P+ P H+WLP+A+V+A Sbjct: 180 FLAMGWLTHAPSFDSADIQIAGLAP-TTQGILLLLLILGFGIKMPLVPLHSWLPDAYVEA 238 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 T ++ L G + K+G YG +RF L FP A F+ ++ ++ + I Y +L ++ Q DI Sbjct: 239 STPTAILLGGALAKLGAYGLVRFALGYFPEAWAQFSGLLAIVAAVGIAYGALAAIAQKDI 298 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K+++AYSSI HM YV + + + GA+ QM+SHGL+ + LF+ VGVI ++ TR++ Sbjct: 299 KRMVAYSSIGHMSYVLLAAAAHTHLSMVGAIAQMISHGLILALLFYLVGVIETKVGTREL 358 Query: 360 FAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 GL++ +P + ++++ MA+ G+PG GF+ EFL+ + ++A G Sbjct: 359 NVLNGLLNPLRGLPTTSALLILGGMASAGIPGLVGFVAEFLIFQGSYGMFPLPTLVAVVG 418 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 L+A+Y + + + FG + + E+ + +L VF G+ P Sbjct: 419 TGLTAVYFVIMINRTCFG-RLDNRTAYYPRVVWSEKMPALVLTLLIVFLGVQP 470 >gi|62161375|ref|YP_214806.1| NADH dehydrogenase subunit 4 [Ambystoma dumerilii] gi|49066302|gb|AAT49245.1| NADH dehydrogenase subunit 4 [Ambystoma dumerilii] Length = 458 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 141/385 (36%), Positives = 222/385 (57%), Gaps = 12/385 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 LG+D IS L++LT +L P IL+S K ++EN R Y+ FL+L+ +I AF S ++ Sbjct: 56 LGLDFISSPLLILTCWLLPLMILASQKHLKENPQTRQRMYISMFLILQISLILAFTSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG SER+ A F YT GS+ +L A++ + + S Sbjct: 116 ILFYIAFETTLIPTLIIITRWGNQSERLSAGTYFLFYTLAGSLPLLIALLALQNSLGSLS 175 Query: 194 IIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L M K P+ Y ++W + +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 LYLLETM-KPPYLFMYTNKFLWFSCLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L P Y+ +I L+L +I SL+ M QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGIIRITMLLTPQKELYYPFMI--LALWGVIMTSLICMRQTDLKSLIAYSSVSH 292 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V + GA+ M+SHGL+SSALF + Y+R H+R + G+ +P Sbjct: 293 MGLVISAAIIQTPWSLTGAVILMISHGLISSALFCLANMNYERSHSRTLLLVRGMQTILP 352 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + ++ ++NM LP + GE +++S+F S + G +++A Y+L++Y+ Sbjct: 353 LMGMWWLMVNLSNMALPPSINLWGELTIMVSLFNWSKWTILFTGLGTLITATYTLYMYQM 412 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G + + ++ RE C++ Sbjct: 413 TQRGPTPAH-LNKMSPNYTREHCLM 436 >gi|317176589|dbj|BAJ54398.1| NADH dehydrogenase subunit 4 [Boulengeromyrus knoepffleri] Length = 460 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 218/389 (56%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 +Y++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NYYMATDPLSTPLLVLTCWLLPLMILASQNHIAPEPINRQRTYITLLVSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKDLG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ + S P + W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMLTMQYYS--PTKMTTWGDKIWWVGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + +AN+ LP +GE ++I+S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTAWWFIANLANLALPPLPNLMGELMIIISMFNWSYWTIILTGLGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTPAHTI-TLQPSHTREHLLM 438 >gi|219524267|ref|YP_002456407.1| NADH dehydrogenase subunit 4 [Mitsukurina owstoni] gi|169640936|gb|ACA61226.1| NADH dehydrogenase subunit 4 [Mitsukurina owstoni] Length = 460 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 137/390 (35%), Positives = 222/390 (56%), Gaps = 11/390 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + ++ +D +S L++LT +L P IL+S I R Y+ + L++ +I F Sbjct: 52 FSNQYMAIDPLSAPLLILTCWLLPLTILASQNHITPEPIIRQRTYITLLIFLQTFLIMTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M Sbjct: 112 SATEMIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLIGSLPLLIALLLMQNS 171 Query: 189 KKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S+I + ++ F ++ + W W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMIIMQHSQLLNLFSWTNKLW-WMACLIAFLVKMPLYGIHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P + L++ II S + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRIIVMLNPLTKEMAYPFLI-LAIWGIIMTSSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V I GA+ M++HGL+SSALF Y+R+H+R + G Sbjct: 290 SSVSHMGLVAAAILIQTPWSFAGAVTLMIAHGLISSALFCLANTNYERIHSRTMLLARGT 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP + +GE L+I S+F SN +L GV+++A YSL Sbjct: 350 QIILPLMATWWFLTSLANLALPPSPNLMGELLIITSLFNWSNWTIILLGPGVLITASYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + + L RE ++ Sbjct: 410 YMFLMTQRGPTP-HHILSLNPNYTREHLLL 438 >gi|62002015|gb|AAX58644.1| NADH dehydrogenase subunit 4 [Boulengerula taitana] gi|239997505|gb|ACS37023.1| NADH dehydrogenase subunit 4 [Boulengerula taitana] Length = 457 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 131/381 (34%), Positives = 212/381 (55%), Gaps = 10/381 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 L +D IS L++LT +LTP I++S + N R Y++ F++L+ +I AF S ++ Sbjct: 56 LAIDQISSPLIILTCWLTPLMIIASQNHMNNNPYNYQRTYIMMFIMLQLSLILAFSSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FE +LIP +II WG +ER+ A F YT GS+ + ++ + + S Sbjct: 116 IMFYIMFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLMGSLPL-LLALLTLYNTTSLS 174 Query: 194 IIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++++ MS+ + MWI+ +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 175 MMNMQLMSQMSSNGYSNNIMWISCMLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVL 234 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P P + +SL I+ S++ + QTD+K LIAYSS++HM Sbjct: 235 LKLGGYGIMRLSIMLTPFTKDAIYPFLI-MSLWGIVMTSMICLRQTDLKSLIAYSSVSHM 293 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V G GA+ M++HGL SS LF Y+R H R + GL +P Sbjct: 294 ALVISATLVHTPWGFSGAVALMIAHGLSSSMLFCLANTSYERTHNRTLLLTRGLQMILPL 353 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A+ ++ ++ NM LP T +GE +I ++F SN + GV+++ALYSL ++ Sbjct: 354 MALWWLMASLTNMALPPTPNLMGELTIITTLFNWSNITIMFTGAGVIITALYSLHMFLMT 413 Query: 432 VFGVSKCEKVQQLKDLSLRER 452 G ++ + + + RE Sbjct: 414 QQGQNQ-KHINSILPTYTREH 433 >gi|156186489|gb|ABU55489.1| NADH dehydrogenase subunit 4 [Danio choprai] Length = 460 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 216/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I+ R Y+ L++ +I AF + Sbjct: 54 NMYMATDPLSTPLLVLTCWLLPLMILASQNHIKPEPINRQRMYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQT 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ + P ++ W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMFILIHSEPLTLNSWGHKIWWVGCLVAFLVKMPLYGMHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ Q P I L+L II LV + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIVLDPLSKQLAYPFII-LALWGIIMTGLVCLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVGHMGLVAGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTSYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P V + +AN+ LP +GE ++I ++F S ++ G +++A YSL+ Sbjct: 351 MILPLATVWWFIANLANLALPPLPNLMGELMIITALFNWSPWTIIITGMGTLITANYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G S E + L RE ++ Sbjct: 411 MFLTSQRG-SVPEHIINLPPSHTREHLLM 438 >gi|16357146|ref|NP_443251.1| NADH dehydrogenase subunit 4 [Harpadon microchir] gi|16266843|dbj|BAB70036.1| NADH dehydrogenase subunit 4 [Harpadon microchir] Length = 460 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 138/359 (38%), Positives = 208/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S I + + R+ Y+ L+ +I AF + + Sbjct: 56 YLGTDPLSTPLLVLTCWLLPLMILASQNHISPEPDTRQRIYLSLLTSLQVFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFY+ FEA+LIP II WG +ER+ A F YT GS+ +L A++++ E T Sbjct: 116 IILFYVMFEATLIPTLFIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQNETGTL 175 Query: 193 SIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L+ P+ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLHYSKPIYLSPWGGKLW-WAACLLAFLVKMPLYGIHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR ++ L PL+S P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRIMIILEPLSSDLAYPFIS-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAAGILIQTPWGFTGALTLMIAHGLASSALFCLANTNYERTHSRTMLLARGLQAAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + +AN+ LP +GE ++I S+F SN +L G +++A YSL+++ Sbjct: 354 PLMTTWWFLANLANLALPPLPNLMGELVIITSLFNWSNWTLILTGLGTLITASYSLYMF 412 >gi|240266478|ref|YP_002970828.1| NADH dehydrogenase subunit 4 [Oplurus grandidieri] gi|239735156|dbj|BAH70378.1| NADH dehydrogenase subunit 4 [Oplurus grandidieri] Length = 460 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 138/396 (34%), Positives = 212/396 (53%), Gaps = 13/396 (3%) Query: 40 ISTINFIFSLFV-WSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPF 98 +S N++F+LF +S+ S + + L D IS L++L+ +L P Sbjct: 17 MSKQNYMFNLFTTYSILIAALSLIMFKTPLTYEPMLSNQWLTTDQISAPLMILSCWLLPL 76 Query: 99 CILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 L+S +Q+ R ++I L++++I F + D++LFY+ FE++LIP +II Sbjct: 77 MALASQNHLQQEPTHRKRIFLITLASLQTLLILTFSATDLILFYVLFESTLIPTLIIITR 136 Query: 155 WGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW--- 210 WG +ER+ A F YT S+ +L AI+ + SS+I + P W Sbjct: 137 WGSQAERLMAGIYFLFYTLASSLPLLIAILYFYTKNNYSSMIITQLVQ--PHLTNSWSST 194 Query: 211 -MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 WIA +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG IR L P+ Sbjct: 195 IFWIACLMAFMVKMPLYGMHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRISTILLPM 254 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 ++ P + L++ I+ S + + QTD+K LIAYSS++HMG V + GA Sbjct: 255 TTKLMYPFML-LAMWGIVMTSAICLRQTDLKSLIAYSSVSHMGLVIAACLIQTPWSISGA 313 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 M M++HGL SS LF Y+R H+R + GL +P ++ + NM LP T Sbjct: 314 MTLMIAHGLTSSMLFCLANTNYERTHSRTMVLARGLHMILPLMMTWWLLANLTNMALPPT 373 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +GE L+I S+F SNT ++ G +L+A YSL Sbjct: 374 INLMGELLIITSLFNWSNTTIIMTGLGTLLTATYSL 409 >gi|86605353|ref|YP_474116.1| NADH-ubiquinone/plastoquinone oxidoreductase subunit 4 family protein [Synechococcus sp. JA-3-3Ab] gi|86553895|gb|ABC98853.1| NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family [Synechococcus sp. JA-3-3Ab] Length = 509 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 144/437 (32%), Positives = 249/437 (56%), Gaps = 9/437 (2%) Query: 40 ISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPF 98 ++ I SLF+++ FD + FQ + + WI SY LG+DG+++L+V L LT Sbjct: 29 LAGIPLAISLFLFTRFDVQATGFQWEQRWDWIPQIGLSYSLGLDGLALLMVALNGLLTLI 88 Query: 99 CILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS 158 IL++ + Y L++ V GAF + ++LLF++F+E LIP++++I +WG Sbjct: 89 AILTAEPETKRPNLFYG-CILLMSGSVNGAFAAQNLLLFFLFYELVLIPIYLLISIWGSP 147 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFF 216 +R YAA KF +YT ++F+L A + + W + T + ++ S P + + +A Sbjct: 148 KRDYAAIKFLIYTAVSAVFLLGAFLAVYWLGDPHTFELAEIRISSLGPAAQTLAL-LALI 206 Query: 217 CSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAP 276 +F IK+P+ PFHTWLP+A+ ++ +V L G++ K+G YG RF L LFP + Sbjct: 207 VAFGIKMPLVPFHTWLPDAYGESSPPVAVLLGGVLSKLGTYGLFRFGLQLFPQVWADLSG 266 Query: 277 VIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSH 336 ++ + IA++ +L ++ Q DIK+++AYSSI HMGY+ +G+ + + GAM QM+SH Sbjct: 267 LLAWWGAIAVLSGALAAIAQKDIKRMVAYSSIGHMGYILLGMAAATPISLTGAMVQMVSH 326 Query: 337 GLVSSALFFCVGVIYDRLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFI 393 GL+ + LF VG++ ++ TRD+ GL++ +P + ++++ MA+ G+PG GF+ Sbjct: 327 GLILALLFDLVGLVERKVGTRDLNVINGLLNPLRGLPTVSALLILGGMASAGIPGLVGFV 386 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 EFL+ +Q+ +L+ G L+A+Y + L + FG + + ER Sbjct: 387 AEFLIFQGSYQDFPLPTLLSICGTGLTAVYFVILLNRTCFG-KLDNRTAYYPRVQGWERI 445 Query: 454 MVYPIAVLTVFFGIYPV 470 + + L V+FGI P+ Sbjct: 446 PGFLLTALIVWFGIQPM 462 >gi|239997561|gb|ACS37075.1| NADH dehydrogenase subunit 4 [Geotrypetes seraphini] Length = 458 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 210/367 (57%), Gaps = 7/367 (1%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAF 129 F + +L D +S L++LT +LTP I++S + R Y++ F++L+ +I AF Sbjct: 51 FINKYLYTDQLSTPLLILTCWLTPLMIIASQNHMINTPINQQRVYILTFIMLQLFLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 ++++ LFYI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + E Sbjct: 111 SAMELTLFYIMFESTLIPTLIIITRWGNQTERLNAGVYFLFYTLMGSLPLLIALLTLQAE 170 Query: 189 KKTSSIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + + + +L M++ P W+A F +F +K+P++ FH WLP AHV+AP AGS+ L Sbjct: 171 QGSLMMTNLPFMTQIHPTQTNQIWWVACFIAFLVKLPLYGFHLWLPKAHVEAPIAGSMIL 230 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R + + P P + +SL II S + + QTD+K LIAYSS Sbjct: 231 AAILLKLGGYGIMRISVMMTPFTKDSVFPFLI-ISLWGIIMTSSICLRQTDLKSLIAYSS 289 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V G GA+ M++HGL SS LF Y+R H+R + G+ Sbjct: 290 VSHMALVIAATIIQTPWGFTGAIILMIAHGLTSSMLFCLANTNYERTHSRTMLLARGMQT 349 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ + NM LP + +GE +I ++F SN +L GV+++ALYSL++ Sbjct: 350 ILPLMATWWLLANLMNMALPPSPNLMGELTIITTLFNWSNITIILTGAGVIITALYSLYI 409 Query: 428 YRKVVFG 434 + G Sbjct: 410 FLTTQQG 416 >gi|213136105|gb|ACJ43657.1| NADH dehydrogenase subunit 4 [Euproctus platycephalus] Length = 459 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 144/411 (35%), Positives = 225/411 (54%), Gaps = 9/411 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 + ++ +D IS L+VLT +L P L+S ++ N R Y+I +L++ +I AF Sbjct: 51 LTNTYMTMDQISSPLLVLTCWLLPLMTLASQNHLKTNPIPRQRTYLIMMTLLQASLIVAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 111 SSTELIMFYIAFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLILQNS 170 Query: 189 KKTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S I + M S +W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 MGTLSFILINMMEPMMTNNSTDKILWLACLLAFMVKMPLYGAHLWLPKAHVEAPVAGSMI 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR + L PL + F P + L+L +I SL+ M QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGIIRITIILTPLTKELFYPFLV-LALWGVIMTSLICMRQTDLKALIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V I GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 290 SVSHMGLVIAAIMIQTPWSFTGAIILMISHGLISSALFCLANLNYERTHSRTLLLVRGAQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A ++ ++NM LP + GE +++S+F S ++ G +++A Y+L+ Sbjct: 350 AMLPLMATWWLLANLSNMALPPSMNLWGELTIMVSLFNWSPWTILITGTGTLITASYTLY 409 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 +Y G + + MV +A + +F + P I TFS Sbjct: 410 MYLMTQRGPTSQHLYSMAPSYTREHFLMVMHLAPMLLFI-LKPTLISGTFS 459 >gi|255077697|gb|ACU00335.1| NADH dehydrogenase subunit 4 [Siren intermedia] Length = 456 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 135/366 (36%), Positives = 208/366 (56%), Gaps = 8/366 (2%) Query: 68 YHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLES 123 +HW+ + D S L++LT +L P IL+S ++ R Y+ F+ L+ Sbjct: 46 FHWM-MMSNKWFACDQFSSPLLILTCWLLPLMILASQHHMKTYSINRQRSYLSMFIFLQM 104 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAI 182 ++ AF + +++LFYI FE++LIP +II WG +ER+ A F YT GS+ +L A+ Sbjct: 105 SLLIAFSTTEVILFYIAFESTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVAL 164 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 +++ + S+I L MS+F + +W A +F +K+P++ H WLP AHV+AP A Sbjct: 165 LMIKNHTGSLSMIML-EMSQFLSPMNNLLWTACLLAFMVKMPLYGVHLWLPKAHVEAPIA 223 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA I+LK+GGYG IR + L PL + P I L+L +I L+ + QTD+K L Sbjct: 224 GSMVLAAILLKLGGYGIIRVTMMLTPLMKELSYPFI-ILALWGVIMTGLICLRQTDLKSL 282 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V G GAM M++HG++SSALF + Y+R HTR + Sbjct: 283 IAYSSVSHMGLVIAAAIIQTPWGYTGAMILMIAHGIISSALFCLANINYERSHTRTLLLI 342 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G P + M+NM LP T+ GE ++IMS+F S ++ G +++A Sbjct: 343 RGAQTIFPLLTTWWFLVNMSNMALPPTTNLWGELIIIMSLFNWSMWTILITGIGTLITAF 402 Query: 423 YSLWLY 428 YSL+++ Sbjct: 403 YSLYMF 408 >gi|84488758|ref|YP_448851.1| NADH dehydrogenase subunit 4 [Indotestudo forstenii] gi|67005673|gb|AAY62468.1| NADH dehydrogenase subunit 4 [Indotestudo forstenii] Length = 459 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 204/371 (54%), Gaps = 14/371 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F +++LGVD IS L+ L+ +LTP IL+S + R + + L+ +I AF Sbjct: 51 FSNHYLGVDRISAPLLTLSCWLTPLMILASQNHLTTEPISRKRTFTATIIFLQISLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE +LIP +II WG ER+ A F YT GS+ +L A+ M + Sbjct: 111 SATELIMFFITFETTLIPTLIIITRWGNQMERLNAGTYFLFYTLVGSLPLLVALSYMQTQ 170 Query: 189 KKTSSIIDLYAMS-KFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T SI Y M P W W A +F IK+P++ H WLP AHV+AP AG Sbjct: 171 NGTLSI---YTMQLNQPTMTTSWAHSTWWFALLIAFMIKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG IR ++ L PL+ P + ++L +I S + + QTD+K LI Sbjct: 228 SMILAAVLLKLGGYGIIRIMMTLNPLSKTLSYPFMT-MALWGVIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V + + GA+ M++HGL SS LF Y+R H R +F Sbjct: 287 AYSSVSHMGLVIAAALTQTQWSYTGAVTLMIAHGLTSSMLFCLANTNYERTHNRMLFLTR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 + +P + ++ ++ NM LP T +GE +I S+F SNT ++ G +++A Y Sbjct: 347 NMQSLLPLMGLWWLLASLTNMALPPTINLMGELTIITSLFNWSNTTILMTGLGTLITATY 406 Query: 424 SLWLYRKVVFG 434 +L++ +G Sbjct: 407 TLFMLITTQWG 417 >gi|239997659|gb|ACS37166.1| NADH dehydrogenase subunit 4 [Schistometopum thomense] Length = 457 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 133/352 (37%), Positives = 200/352 (56%), Gaps = 9/352 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 D IS L++LT +LTP IL+S + R Y+ F++L+ +I AF S+D++L Sbjct: 58 TDQISTPLIILTCWLTPLMILASQNHLNNMPFNRQRTYISTFIILQMSLIMAFSSIDLIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + + S+I Sbjct: 118 FYIMFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLMGSLPLLVALLSLHNNLGSLSLI 177 Query: 196 DL--YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++ Y ++ F+ +W A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 178 NIQYYNQTQLNFTNHFWC-AACLIAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLK 236 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L+ L P + P + LSL I+ S + + QTD+K LIAYSS++HM Sbjct: 237 LGGYGIMRILILLTPFTKELIYPFLI-LSLWGIVMTSSICLRQTDLKSLIAYSSVSHMAL 295 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V GA M++HGL SS LF Y+R H R + GL +P A Sbjct: 296 VISATLIQTPWSFTGATALMIAHGLTSSMLFCLANTNYERTHNRTMLLTRGLQIILPLMA 355 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 + + + NM LP + F+GE +I ++F SN +L GV+++ALYSL Sbjct: 356 MWWLTANLMNMALPPSPNFMGEISIISALFNWSNMTILLTGTGVIITALYSL 407 >gi|317176799|dbj|BAJ54593.1| NADH dehydrogenase subunit 4 [Stomatorhinus sp. CU 6164] Length = 460 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/388 (35%), Positives = 219/388 (56%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S L++LT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NHYMATDQLSTPLLILTCWLLPLMILASQNHISPEPINRQRTYITLLISLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVILFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLILHKDLG 173 Query: 191 TSSIIDL--YAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + YA +K + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTMQYYAPTKMSAWGDKIW-WTGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 VSHMGLVASGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 VLPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTIILTGLGTLITAAYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + V L+ RE ++ Sbjct: 412 FLMTQRGPTPAHTV-TLQPSHTREHLLM 438 >gi|89257228|ref|YP_514758.1| NADH dehydrogenase subunit 4 [Phractolaemus ansorgii] gi|88759324|dbj|BAE80003.1| NADH dehydrogenase subunit 4 [Phractolaemus ansorgii] gi|152962858|dbj|BAF74018.1| NADH dehydrogenase subunit 4 [Phractolaemus ansorgii] Length = 460 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 136/388 (35%), Positives = 215/388 (55%), Gaps = 13/388 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKS-IQE---NFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S +QE R ++ + L++ +I AF S + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMLQEPTSRQRSFISLLVFLQASLIMAFSSTE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + T Sbjct: 116 FIMFYIAFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLMGSLPLLVALMTLQSNMGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S++ + ++ P ++ W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTIQFLN--PINLTSWSSKIWWVGCLIAFLVKMPLYGMHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRIISILDPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 293 SHMGLVVAGILTQTPWGFTGAIILMIAHGLVSSALFCLANTSYERTHSRTMVLTRGMQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 MP + +AN+ LP T +GE +I+++F S +L G +++A YSL+L+ Sbjct: 353 MPLATTWWFMMNLANLALPPTPNLMGELTIIITMFNWSPWTIILTGAGTLITAAYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVY 456 G + + L RE +++ Sbjct: 413 LMTQRGPTPTHMI-NLTPYHTREHLLMF 439 >gi|11465911|ref|NP_046140.1| NADH dehydrogenase subunit 4 [Chlamydomonas moewusii] gi|2865257|gb|AAC39340.1| NADH dehydrogenase subunit 4 [Chlamydomonas moewusii] Length = 498 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 159/426 (37%), Positives = 249/426 (58%), Gaps = 39/426 (9%) Query: 40 ISTINFIFSLFVWSVFDKGRSSFQM---IEYYHWIDYFCSYHLGVDGISILLVVLTTFLT 96 ++ + +++L++WS++D S QM IE H GVD +S+ L +LT+ L Sbjct: 45 VTMVVLLWTLYLWSIYDAIGHSLQMVVIIERLH-------ISFGVDSMSLSLTLLTSALF 97 Query: 97 PFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG--V 154 P CI+ + F+ Y I FL+LE ++ GA LD+L FYI FEASLI +F++IG V Sbjct: 98 PICIM-----VMRTFKGY-ITFLLLEIVIYGALNVLDLLGFYILFEASLILLFLLIGRSV 151 Query: 155 WGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII-----------DLYAMSKF 203 +G E AAYK LYT GS+ +L I V+ + ++S+I D Y + + Sbjct: 152 YGNIE---AAYKIVLYTMGGSLILLPIIFVLYAQGGSTSLIYLLCNFGSQHADAYQSAYY 208 Query: 204 PFSIQYWM--WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIR 261 S + + W F FA+KIP+ P H WLP AHV APTAGSV LAG++LK+GG G IR Sbjct: 209 LLSERQMILGW-GLFIVFAVKIPLMPVHLWLPEAHVAAPTAGSVLLAGVLLKLGGLGFIR 267 Query: 262 FLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSG 321 F++P+ P + P++ + L + +Y++L ++ Q D+KK++AYSSI HM +T+ IF+ Sbjct: 268 FMIPILPSFTASIFPLVCCMCLASFLYSTLSTIRQIDLKKIVAYSSIGHMAMITLTIFTM 327 Query: 322 MKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTM 381 + A F M++HGLVS LF VG++YDR HT+ IF + GL ++P ++++ ++ T+ Sbjct: 328 SEYSAYNATFMMIAHGLVSPCLFLLVGLLYDRFHTKLIFYFTGLAAHLPIFSIMFLLCTL 387 Query: 382 ANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV----FGVSK 437 AN+ P F+ EFL + S+F + A + VL + S W + +++ FG++ Sbjct: 388 ANLSFPLFPNFLAEFLCLTSLFSVHSLYAYVFCICQVLGTVASFWAFNRIIHGVAFGLTS 447 Query: 438 CEKVQQ 443 K+ Q Sbjct: 448 NYKINQ 453 >gi|213136371|gb|ACJ43904.1| NADH dehydrogenase subunit 4 [Triturus cristatus] Length = 459 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 141/407 (34%), Positives = 220/407 (54%), Gaps = 15/407 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLL 136 VD IS L+VLT +L P L+S ++ + R Y+I +L++ +I AF S ++ L Sbjct: 58 VDQISSPLLVLTCWLLPLMTLASQNHLKTSPLPRQRTYLIMLTLLQASLIVAFSSTELTL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM-----CWEKK 190 FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 118 FYIAFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAIQNSSGSLSLI 177 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ DL + I +W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 178 LLTMKDLMMTQTYTDKI---LWLACLLAFMVKMPLYGTHLWLPKAHVEAPVAGSMILAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P + L+L ++ SL+ M QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGIIRITMILTPLTKEMAYPFMI-LALWGVVMTSLICMRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I + GA+ M+SHGL+SSALF + Y+R H+R + G MP Sbjct: 294 MGLVIAAIMIQTPWSLTGAVILMISHGLISSALFCLANLNYERAHSRTLLLVRGAQAVMP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++NM LP T GE +++S+F S ++ G +++A Y+L+++ Sbjct: 354 LMATWWLIANLSNMALPPTMNLWGELTIMVSLFNWSPWTILITGLGALITASYTLYMFLM 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 G + + Q+ RE ++ + + P I TFS Sbjct: 414 TQRGPTP-PHLGQINPSYTREHFLLMMHLAPMLLLILKPAIISGTFS 459 >gi|261888551|gb|ACY06226.1| NADH dehydrogenase subunit 4 [Ambystoma barbouri] Length = 458 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/387 (36%), Positives = 222/387 (57%), Gaps = 16/387 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 LG+D IS L++LT +L P IL+S K ++EN R Y+ FLVL+ +I AF S ++ Sbjct: 56 LGLDFISSPLLILTCWLLPLMILASQKHLKENPPTRQRMYISMFLVLQISLILAFTSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG SER+ A F YT GS+ +L A++ + + T S Sbjct: 116 ILFYIAFETTLIPTLIIITRWGNQSERLNAGTYFLFYTLAGSLPLLIALLAL--QNNTGS 173 Query: 194 IIDLYAMS--KFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + LY + K P+ Y ++W + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 L-SLYLLENMKTPYLFMYTNKFLWFSCLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L L P + +I L+L +I SL+ M QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGIIRISLLLTPQKELCYPFMI--LALWGVIMTSLICMRQTDLKSLIAYSSV 290 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V + GA+ M+SHGL+SSALF + Y+R H+R + G+ Sbjct: 291 SHMGLVIAAAIIQTPWSLTGAVILMISHGLISSALFCLANMNYERSHSRTLLLVRGMQTI 350 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + ++ ++NM LP + GE +++S+F S + G +++A Y+L+++ Sbjct: 351 LPLMGMWWLLVNLSNMALPPSLNLWGELTIMVSLFNWSKWTILFTGLGTLITATYTLYMF 410 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + ++ RE C++ Sbjct: 411 LMTQRGPTPVH-LNKMTPSYTREHCLM 436 >gi|322422739|ref|YP_004222531.1| NADH dehydrogenase subunit 4 [Hippopotamyrus wilverthi] gi|317176519|dbj|BAJ54333.1| NADH dehydrogenase subunit 4 [Hippopotamyrus wilverthi] Length = 460 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 143/404 (35%), Positives = 224/404 (55%), Gaps = 12/404 (2%) Query: 61 SFQMIEYYHWIDYFCSYH-LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYM 115 SF ++Y + S H + D +S L+VLT +L P IL+S I R Y+ Sbjct: 38 SFSWLKYNTEAGWTSSNHYMATDQLSTPLLVLTCWLLPLMILASQNHIAPEPINRQRTYI 97 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFG 174 + L++ +I AF + ++++FYI FEA+LIP +II WG +ER+ A F YT G Sbjct: 98 TLLISLQTFLILAFGATEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAG 157 Query: 175 SIFMLFAIVVMCWEKKTSSIIDL--YAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 S+ +L A++++ + T S++ + YA +K + + W W +F +K+P++ H W Sbjct: 158 SLPLLVALLILQKDLGTLSMLTMQYYAPTKTIAWGDKIW-WAGCLLAFLVKMPLYGVHLW 216 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP AHV+AP AGS+ LA ++LK+GGYG +R ++ L PL + P I L+L II Sbjct: 217 LPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMMVMLTPLTKELAYPFII-LALWGIIMTGS 275 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 + + QTD+K LIAYSS++HMG V GI G GA+ M++HGLVSSALF Y Sbjct: 276 ICLRQTDLKSLIAYSSVSHMGLVASGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNY 335 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R H+R + GL +P + +AN+ LP +GE ++I S+F S + Sbjct: 336 ERTHSRTLLLARGLQMILPLMTAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTII 395 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 LA G +++A YSL+++ G + + L+ RE ++ Sbjct: 396 LAGLGTLITAAYSLYMFLMTQRGPTPTHTI-TLQPSHTREHLLM 438 >gi|209664437|ref|YP_002286797.1| NADH dehydrogenase subunit 4 [Fundulus olivaceus] gi|209446941|dbj|BAG74808.1| NADH dehydrogenase subunit 4 [Fundulus olivaceus] Length = 460 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 211/367 (57%), Gaps = 16/367 (4%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGA 128 Y+ + ++ D +S L+VLT +L P I++S ++ EN + I+ L+ L+ +I A Sbjct: 51 YYINNYMASDPLSTPLLVLTCWLLPLMIIASQNHLKAEPENRQRTYISLLISLQIFLILA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + +M++FYI FEA+LIP +II WG ER+ A F YT GS+ +L A++V Sbjct: 111 FSATEMIMFYIMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVALLV--- 167 Query: 188 EKKTSSIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + + + +++ P ++ + W W+A +F +K+P++ H WLP AHV+AP Sbjct: 168 YQSSMGSLSFLSLTNLPMTCTGLYADKMW-WVACLLAFLVKMPLYGVHLWLPKAHVEAPI 226 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA ++LK+GGYG +R + L PL + P I L+L +I + + QTD+K Sbjct: 227 AGSMVLAAVLLKLGGYGMMRVMTILTPLTEELSYPFII-LALWGLIMTGSICLRQTDLKS 285 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R I Sbjct: 286 LIAYSSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTIVL 345 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GL MP A + ++AN+ LP +GE ++I S+F S +L G +++A Sbjct: 346 ARGLQMIMPLMAAWWFLASLANLALPPLPNLMGEIMIISSLFNWSFFTLILTGAGTLITA 405 Query: 422 LYSLWLY 428 YSL+++ Sbjct: 406 SYSLYMF 412 >gi|25057448|ref|NP_740253.1| NADH dehydrogenase subunit 4 [Scaphirhynchus cf. albus] gi|25006488|dbj|BAC23980.1| NADH dehydrogenase subunit 4 [Scaphirhynchus cf. albus] Length = 460 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 137/359 (38%), Positives = 209/359 (58%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S I R Y+ + L+ +I AF + + Sbjct: 56 YLGTDPLSTPLLVLTCWLLPLMILASQNHISPEPIGRQRTYITLLVSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E + Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKELGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M P ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLIIQYMQPTPLCTWADKIW-WAACLIAFLVKMPLYGAHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L P + + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMIVMLEPTSKNFAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+RLH+R + G+ + Sbjct: 294 HMGLVVAGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERLHSRTLLLARGMQTIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I S+F S+ VL G +++A YSL++Y Sbjct: 354 PLMATWWFIANLANLALPPLPNLMGELVIITSMFNWSSWTIVLTGGGTLITASYSLYMY 412 >gi|237869151|ref|YP_002907487.1| NADH dehydrogenase subunit 4 [Papyrocranus congoensis] gi|237648875|dbj|BAH58970.1| NADH dehydrogenase subunit 4 [Papyrocranus congoensis] Length = 460 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 135/388 (34%), Positives = 211/388 (54%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S +VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYVATDQLSTPFLVLTCWLLPLMILASQYHISPEPINRQRSYISLLISLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLIMQKDTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + P + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLIIQYTKTTPLATWADKIW-WTGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG R ++ L PL Q P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMARIIIMLDPLTKQLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G+ GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSTLFCLANTNYERTHSRTLLLARGLQT 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + +AN+ LP +GE L+I ++F S +L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIANLANLALPPLPNLMGELLIITTMFNWSFWTILLTGLGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L RE ++ Sbjct: 412 FLMTQRGPTPTHTI-TLSPSHTREHLLM 438 >gi|156186462|gb|ABU55477.1| NADH dehydrogenase subunit 4 [Danio feegradei] Length = 457 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 51 NTYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRMYITLLTSLQTFLIMAFGA 110 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 111 TEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQT 168 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 169 TGTLSMLVLQHSGPLLMDSWGHKIWWAGCLIAFLVKMPLYGMHLWLPKAHVEAPVAGSMI 228 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ Q P I L+L II LV + QTD+K LIAYS Sbjct: 229 LAAVLLKLGGYGMMRIMVTLDPLSKQLAYPFII-LALWGIIMTGLVCLRQTDLKSLIAYS 287 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 288 SVGHMGLVAGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTSYERTHSRTMILARGLQ 347 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P V + +AN+ LP +GE ++I ++F S VL G +++A YSL+ Sbjct: 348 MVLPLATVWWFIANLANLALPPLPNLMGELMIITALFNWSPWTIVLTGMGTLITANYSLY 407 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G S E + L RE ++ Sbjct: 408 MFLTSQRG-SVPEHIINLSPSHSREHLLM 435 >gi|260766682|gb|ACX50386.1| NADH dehydrogenase subunit 4 [Thoburnia atripinnis] Length = 460 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 140/387 (36%), Positives = 216/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINSEPINRQRLYISLLASLQTFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTSYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFVANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPAP-NHITDLPPFHTREHLLI 438 >gi|62161361|ref|YP_214793.1| NADH dehydrogenase subunit 4 [Ambystoma andersoni] gi|49066288|gb|AAT49232.1| NADH dehydrogenase subunit 4 [Ambystoma andersoni] Length = 458 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/385 (35%), Positives = 221/385 (57%), Gaps = 12/385 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 LG+D IS L++LT +L P IL+S K ++EN R Y+ FL+L+ +I AF S ++ Sbjct: 56 LGLDFISSPLLILTCWLLPLMILASQKHLKENPQTRQRMYISMFLILQISLILAFTSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI E +LIP +II WG SER+ A F YT GS+ +L A++ + + S Sbjct: 116 ILFYIALETTLIPTLIIITRWGNQSERLSAGTYFLFYTLAGSLPLLIALLALQNNLGSLS 175 Query: 194 IIDLYAMSK---FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L M F ++ ++ +W + +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 LYLLETMKPTYLFMYTNKF-LWFSCLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L P Y+ +I L+L +I SL+ M QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGIIRITMLLTPQKELYYPFMI--LALWGVIMTSLICMRQTDLKSLIAYSSVSH 292 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V + GA+ M+SHGL+SSALF + Y+R H+R + G+ +P Sbjct: 293 MGLVISAAIIQTPWSLTGAVILMISHGLISSALFCLANMNYERSHSRTLLLVRGMQTILP 352 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + ++ ++NM LP + GE +++S+F S + G +++A Y+L++Y+ Sbjct: 353 LMGMWWLMVNLSNMALPPSINLWGELTIMVSLFNWSKWTILFTGLGTLITATYTLYMYQM 412 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G + + ++ RE C++ Sbjct: 413 TQRGPTPAH-LNKMSPNYTREHCLM 436 >gi|156186464|gb|ABU55478.1| NADH dehydrogenase subunit 4 [Danio kyathit] Length = 460 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NTYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVNRQRMYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QES 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVLQHSDPLLLNSWGHKIWWAGCLIAFLVKMPLYGMHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ Q P I L+L +I LV + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKQLAYPFII-LALWGVIMTGLVCLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVGHMGLVAGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTSYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P V + +AN+ LP +GE ++I ++F S ++ G +++A YSL+ Sbjct: 351 MVLPLATVWWFIANLANLALPPLPNLMGELMIITALFNWSPWTIIITGMGTLITANYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G S E + L RE ++ Sbjct: 411 MFLTSQRG-SVPEHITNLSPSHTREHLLM 438 >gi|213136119|gb|ACJ43670.1| NADH dehydrogenase subunit 4 [Lyciasalamandra flavimembris] Length = 459 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 207/359 (57%), Gaps = 12/359 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + VD IS L+VLT +L P L+S ++ N R Y+ ++L+ +I AF S ++ Sbjct: 56 MTVDPISSPLLVLTCWLLPLMTLASQNHLKLNPITRQRTYLTMLIILQMSLISAFSSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++V+ + S Sbjct: 116 ILFYISFEATLIPTLIIITRWGNQTERLNAGTYFLFYTIAGSLPLLVALLVIQVTLGSLS 175 Query: 194 IIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 II + + P Q +M W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 IILINTLQ--PILSQDYMSTALWLACLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR + L PL + P L+L I SL+ M QTD+K LIAYSS++ Sbjct: 234 VLLKLGGYGIIRISILLTPLMKEMCYP-FMILALWGAIMTSLICMRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V + GA+ M+SHGL+SSALF + Y+R H+R + G+ M Sbjct: 293 HMGLVIAATMIQTPWSMTGAIILMISHGLISSALFCLANLNYERTHSRTLLLVRGMQTVM 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ ++NM LP + GE +++S+F S ++ G++++A Y+L+++ Sbjct: 353 PLMTTWWLLVNLSNMALPPSMNLWGELAIMVSLFNWSLWTILITGTGILVTAAYTLYMF 411 >gi|90579200|ref|ZP_01235010.1| NADH dehydrogenase I, M subunit [Vibrio angustum S14] gi|90440033|gb|EAS65214.1| NADH dehydrogenase I, M subunit [Vibrio angustum S14] Length = 500 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 148/471 (31%), Positives = 246/471 (52%), Gaps = 12/471 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ FLP + +I S C + F ++ ++T+ L W F M Sbjct: 2 LSLLIFLPMVAALLIGSS----CRKLPFIARSMTLTTLIIESMLVAWIFITHQVHGFSMT 57 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E +WI D+ Y + +DGIS+ L+ LT L +L +W + ++ + L+ S Sbjct: 58 ESLNWIPDFGIKYLVSMDGISLSLIGLTCTLFIVAMLVAWHQVNR-WQAFGPLMLLTLSG 116 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++GAFL+LD++LFY+F+E LIP++ ++ WGG + AA KF L T GS+ ML ++V Sbjct: 117 IMGAFLALDLMLFYVFWELMLIPIYFMLSFWGGKDTKQAALKFVLVTITGSLLMLVSLVA 176 Query: 185 MCWEKKTSSII---DLYAMSKFPFSIQYWMWI--AFFCSFAIKIPMFPFHTWLPNAHVQA 239 + ++ + D + ++ P + + + F +F IKIP FPFH W P+ + + Sbjct: 177 LYIINGNNTGVWTFDYFYLASHPIMGELAIPVVCGFLIAFLIKIPGFPFHFWAPDTYREG 236 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 A S+ L+G+M +G YG +RF L +FP A + L I +YA+L++ Q D+ Sbjct: 237 APAVSLLLSGVMANVGAYGILRFCLAIFPEAMHQMMYIGMALGAIGSLYAALLAFRQKDL 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 + +IAYSSI+HM V + IF+ + GA+ Q+++HGL + LF V ++ R + Sbjct: 297 RNVIAYSSISHMNLVVLAIFAWQLQALNGAVIQLIAHGLSVAGLFAVVRMLQARGFSGKF 356 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GGL +P V ++ A++G+PG F GE L++ F S LA+F +VL Sbjct: 357 DEMGGLYKVLPGIGVFLLFIVAASVGIPGLGNFAGEILLLAGSFSVSPLWTSLAAFSIVL 416 Query: 420 SALYSLWLYRKVVFG-VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +Y L Y G +S + ++L DL+ RE+ I + + G+ P Sbjct: 417 GVVYFLRAYGLAFLGPISDDNEQRKLIDLTAREKLTASIIVIGLFWVGLEP 467 >gi|280978345|ref|YP_003345277.1| NADH dehydrogenase subunit 4 [Moringua edwardsi] gi|271280254|dbj|BAI53142.1| NADH dehydrogenase subunit 4 [Moringua edwardsi] Length = 460 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S + + R Y++ + L+ ++ AF + Sbjct: 54 NMYLATDPLSTPLLVLSCWLLPLMILASQNHMMTEPENRQRTYIMLLISLQILLTAAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M+LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 114 TEMILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLTGSLPLLIALLAL--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P ++ W W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLILQYTKPLTLLSWADKMWWLACLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRILIVLNPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R HTR + G+ Sbjct: 291 SVSHMGLVVSGIMIQTPWGFTGAITLMIAHGLVSSMLFCLANTNYERTHTRTLLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S F S +L G +++A YSL+ Sbjct: 351 TILPLMATWWFMANLANLALPPLPNLMGELMIISSTFNWSQWSIILTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLTTQRGPTP-NHILALEPSHTREHLLI 438 >gi|119360302|ref|YP_913701.1| NADH dehydrogenase subunit 4 [Hypentelium nigricans] gi|119225425|dbj|BAF41775.1| NADH dehydrogenase subunit 4 [Hypentelium nigricans] Length = 460 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R YM L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINSEPLSRQRLYMSLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPAFHTREHLLM 438 >gi|229002624|dbj|BAH57748.1| NADH dehydrogenase subunit 4 [Carassius auratus] Length = 460 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 215/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II L+ + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGLICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|62184406|ref|YP_220650.1| NADH dehydrogenase subunit 4 [Latimeria menadoensis] gi|60543137|dbj|BAD90825.1| NADH dehydrogenase subunit 4 [Latimeria menadoensis] gi|260103383|gb|ACX31747.1| NADH dehydrogenase subunit 4 [Latimeria menadoensis] Length = 460 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/385 (34%), Positives = 210/385 (54%), Gaps = 11/385 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L++LT +L P IL+S + R ++ + L++ +I AF + ++ Sbjct: 57 MATDPLSTPLLILTCWLLPLMILASQNHMSMEPLNRQRSFISLLISLQTFLIMAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++ T S Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLMGSLPLLIALLMTQNNLGTLS 176 Query: 194 ---IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 I L+ M W W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MPLIQHLHQMKLHTHGDMMW-WTACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L P+ P I L+L II + + QTD+K LIAYSS+ H Sbjct: 236 LLKLGGYGMMRLIMMLTPMTKTLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVGH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI + G GA M++HGL SSALF Y+R H+R + G+ +P Sbjct: 295 MGLVAAGILTQTPWGFTGATVLMIAHGLTSSALFCLANTNYERTHSRTMILARGMQVILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 ++ +AN+ LP ++ +GE L+I + F SN + G++++A+YSL ++ Sbjct: 355 LMTFWWLMMNLANLALPPSTNLMGELLIITTTFNWSNWTLTMTGLGMLITAIYSLHMFLT 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G++ + ++ RE ++ Sbjct: 415 TQRGLT-TNHIISIEPSHTREHLLM 438 >gi|52221048|ref|YP_086850.1| NADH dehydrogenase subunit 4 [Rhineura floridana] gi|47026680|gb|AAT08499.1| NADH dehydrogenase subunit 4 [Rhineura floridana] Length = 460 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 138/392 (35%), Positives = 214/392 (54%), Gaps = 26/392 (6%) Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIG 127 Y+ Y + +D IS L+VL+ +L P L+S + + R ++ +L+ ++ Sbjct: 51 TYYNDY-MSIDPISAPLLVLSCWLLPLMTLASQHHLAQEPVNRKRLFLTTVTLLQLFLLM 109 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 F + D ++FYI FEA+L+P V+I WG ER+ A F YT S+ +L AI+ M Sbjct: 110 TFSATDFMMFYIMFEATLVPTLVVITRWGAQMERLTAGTYFLFYTLASSLPLLVAILYMT 169 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 K S + AM P W +WIA +F +K+P++ H WLP AHV+AP A Sbjct: 170 --NKFYSTSTMMAMMLQPNFTNSWTTTMLWIACTLAFLVKMPLYGLHLWLPKAHVEAPIA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA-PV--IFFLSLIAIIYASLVSMVQTDI 299 GS+ LA ++LKMGGYG IR L P+ +Q P+ I L+L +I S + + QTD+ Sbjct: 228 GSMVLAAVLLKMGGYGIIR----LTPILNQTMTKPIYPIMALALWGMIMTSTICLRQTDL 283 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K LIAYSS++HMG V + G+ GA+ M++HGL SS LF Y+R HTR + Sbjct: 284 KALIAYSSVSHMGLVIAAAMTSSPWGLSGAIMLMVAHGLTSSMLFSLANTNYERTHTRTL 343 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 L +P A ++ + NM LP TS F GE L++ +VF SN +L + +L Sbjct: 344 LLTRSLQTVLPLMATWWLLANLTNMALPPTSNFTGEILIMSAVFSWSNYTIMLTAAAAML 403 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 +++YSL+++ + ++ QQ+ +++ E Sbjct: 404 TSVYSLYMFLSI-------QRGQQMPHMNITE 428 >gi|45388039|ref|NP_991089.1| NADH dehydrogenase subunit 4 [Synaphobranchus kaupii] gi|45259673|dbj|BAD12347.1| NADH dehydrogenase subunit 4 [Synaphobranchus kaupii] Length = 460 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S + R Y+ + L+ + AF + Sbjct: 54 NQYLATDPLSTPLLVLSCWLLPLMILASQNHMTYEPVSRQRSYITLLISLQIFLTMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ M + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAMQKDLG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ + S P ++ W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSLLSIQYTS--PLTLYSWGDKIWWVGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGLMRMMVVLDPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + +AN+ LP +GE ++I S+F S ++ G +++A YSL+ Sbjct: 351 MILPLMTAWWFIANLANLALPPLPNLMGELMIITSMFNWSPWTIIMTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTP-NHIMGLEPTHTREHLLI 438 >gi|53686344|ref|YP_097163.1| NADH dehydrogenase subunit 4 [Desmognathus wrighti] gi|51979935|gb|AAU20600.1| NADH dehydrogenase subunit 4 [Desmognathus wrighti] Length = 455 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 136/382 (35%), Positives = 218/382 (57%), Gaps = 14/382 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D IS L+VLT +L P IL+S +++ + Y+ F++L+ ++ AF S ++++ Sbjct: 56 LDQISSPLLVLTCWLIPLMILASHNHMKDSPTYQQQMYISMFVLLQMALVMAFSSTELIM 115 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+LIP +II WG +ER+ A F YT GS+ L AI+++ + K+S Sbjct: 116 FYISFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLAGSLPFLIAILLI-YNSKSSLHM 174 Query: 194 --IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 +++LY MS + +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA ++ Sbjct: 175 EFLLNLYQMSP-ALTTNKILWLACLMAFLVKMPLYGFHLWLPKAHVEAPVAGSMILAAVL 233 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR L PL + +I LSL I+ L+ M QTD+K LIAYSS+ HM Sbjct: 234 LKLGGYGIIRVTLMFSPLTELSYPFII--LSLWGILMTGLMCMRQTDLKSLIAYSSVGHM 291 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V GA M+SHG++SSALF Y+R H+R + GL +P Sbjct: 292 GLVVAAALIQTPWSFMGATILMVSHGMISSALFCLANTNYERTHSRTMLLARGLQMTLPL 351 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ ++ NM LP T+ GE ++++ +F+ S ++ G++++A Y+L ++ Sbjct: 352 MFTWWLLISLFNMALPPTTNLWGELMIMVLLFKWSPETILITGLGMLITAAYTLHMFITT 411 Query: 432 VFGVSKCEKVQQLKDLSLRERC 453 G+ + ++Q+ RE C Sbjct: 412 QRGLLP-KHLKQMPPSHTREHC 432 >gi|217331630|gb|ACK38350.1| NADH dehydrogenase subunit 4 [Pseudohynobius shuichengensis] Length = 459 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 135/366 (36%), Positives = 213/366 (58%), Gaps = 16/366 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 + +LG+D +S L++LT +L P IL+S ++ N R Y+ + L+ +I AF Sbjct: 51 LVNKYLGLDPLSSPLLILTCWLLPMMILASQNHLKNNPENRQRLYITMMIFLQMSLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M+LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 111 AATEMILFYITFEATLIPTLIIITRWGNQAERLNAGMYFLFYTLAGSLPLLVALLIL--- 167 Query: 189 KKTSSIIDLYAMS-KFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + TS + L+ + P FS + W W+A +F +K+P++ H WLP AHV+AP A Sbjct: 168 QNTSGSLSLFLLELMHPIQLSMFSDKIW-WVACLLAFMVKMPLYGMHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L PL+ + P I L+L +I ++ + QTD+K L Sbjct: 227 GSMILAAVLLKLGGYGVLRISIMLTPLSKELSYPFII-LALWGVIMTGMICIRQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSSI+HMG V GA M+SHGL+SSALF + Y+R H+R + Sbjct: 286 IAYSSISHMGLVISAALIQTPWSFSGATILMISHGLISSALFCLANMNYERTHSRTLLLM 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G +P A ++ ++NM LP + GE +++S+F SN ++ G +++AL Sbjct: 346 RGAQTMLPLMATWWLLINLSNMALPPSLNLWGELTILVSLFNWSNWTVLITGLGTLITAL 405 Query: 423 YSLWLY 428 YSL+++ Sbjct: 406 YSLYMF 411 >gi|260766688|gb|ACX50390.1| NADH dehydrogenase subunit 4 [Thoburnia rhothoeca] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 141/387 (36%), Positives = 216/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINSEPINRQRLYISLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++Q W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSEPLTLQSWGHKLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLEPLSKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R HTR + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHTRTMVLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGTGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHISGLPPFHTREHLLM 438 >gi|16357216|ref|NP_443329.1|ND4_15815 NADH dehydrogenase subunit 4 [Zu cristatus] gi|16266969|dbj|BAB70127.1| NADH dehydrogenase subunit 4 [Zu cristatus] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 213/373 (57%), Gaps = 17/373 (4%) Query: 68 YHWIDYFC-------SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMI 116 + W++ FC S +L VD +S L+VLT +L P +++S ++ R ++ Sbjct: 39 FTWLNLFCETGWMMTSMYLAVDPLSSPLLVLTCWLLPLMVIASQNHLKTEPISRQRTFLS 98 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGS 175 VL+ ++I AF + +++LFYI FEA+LIP ++I WG +ER+ A F YT GS Sbjct: 99 LLTVLQILLILAFSATELVLFYIMFEATLIPTLLVITRWGNQAERLNAGTYFLFYTLAGS 158 Query: 176 IFMLFAIVVMCWEKKT-SSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 + +L A++++ + T S +I LY+ + P W W A +F +K+P++ H WL Sbjct: 159 LPLLVALLLLQNDTGTLSMLILLYSKPLVSTPLGGTLW-WAACLLAFLVKMPLYGIHLWL 217 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P AHV+AP AGS+ LA ++LK+GGYG IR ++ L PL+ P I F +L ++ + Sbjct: 218 PKAHVEAPIAGSMILAAVLLKLGGYGMIRMMVILEPLSKNLIYPFIIF-ALWGVVMTGSI 276 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + QTD+K LIAYSS+ HMG V GI G+ GA+ M++HGL SSALF Y+ Sbjct: 277 CLRQTDLKSLIAYSSVGHMGLVAAGILIQTPWGLAGAIILMIAHGLTSSALFCLANTNYE 336 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R HTR + GL P AV + ++AN+ LP +GE +++ S+F S +L Sbjct: 337 RTHTRTMLLARGLQSIFPLLAVWWFLASLANLALPPLPNLMGELMIMTSMFNWSPFSLIL 396 Query: 413 ASFGVVLSALYSL 425 G +++A YSL Sbjct: 397 TGAGALITAAYSL 409 >gi|121308891|dbj|BAF43545.1| NADH dehydrogenase subunit 4 [Latimeria chalumnae] gi|121308905|dbj|BAF43558.1| NADH dehydrogenase subunit 4 [Latimeria chalumnae] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 202/365 (55%), Gaps = 10/365 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L++LT +L P IL+S + R ++ + L++ +I AF + ++ Sbjct: 57 MATDPLSTPLLILTCWLLPLMILASQNHMSMEPLNRQRSFISLLISLQTFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++ T S Sbjct: 117 ILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLMGSLPLLVALLMTQNNLGTLS 176 Query: 194 ---IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 I +Y M W W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MPLIQHMYQMKLHTHGDMMW-WTACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L P+ P I L+L II + + QTD+K LIAYSS+ H Sbjct: 236 LLKLGGYGMMRLIMMLAPMTKTLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVGH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI + G GA M++HGL SSALF Y+R H+R + G+ +P Sbjct: 295 MGLVAAGILTQTPWGFTGATVLMIAHGLTSSALFCLANTNYERTHSRTMILARGMQVILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 ++ +AN+ LP ++ +GE L+I + F SN + G++++A+YSL ++ Sbjct: 355 LMTFWWLMMNLANLALPPSTNLMGELLIITTTFNWSNWTLTMTGLGMLITAIYSLHMFLT 414 Query: 431 VVFGV 435 G+ Sbjct: 415 TQRGL 419 >gi|310788878|gb|ADP24442.1| NADH dehydrogenase subunit 4 [Sikukia stejnegeri] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 216/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYIMLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLQLNSWGHMAWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGTICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|322422503|ref|YP_004222080.1| NADH dehydrogenase subunit 4 [Genyomyrus donnyi] gi|317176407|dbj|BAJ54229.1| NADH dehydrogenase subunit 4 [Genyomyrus donnyi] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 141/405 (34%), Positives = 220/405 (54%), Gaps = 14/405 (3%) Query: 61 SFQMIEYYHWIDYFCSYH-LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYM 115 SF ++Y + S H + D +S L+VLT +L P IL+S I R Y+ Sbjct: 38 SFNWLKYNTETGWTSSNHYMATDQLSTPLLVLTCWLLPLMILASQNHIAPEPINRQRTYI 97 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFG 174 + L++ +I AF + ++++FY+ FEA+LIP +II WG +ER+ A F YT G Sbjct: 98 TLLISLQTFLILAFGATEVIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAG 157 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHT 230 S+ +L A++++ + T S++ + S P W W +F +K+P++ H Sbjct: 158 SLPLLVALLILQKDLGTLSMLTMQYYS--PTETTTWGDKIWWAGCLLAFLVKMPLYGVHL 215 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP AGS+ LA ++LK+GGYG +R ++ L PL + P I L+L II Sbjct: 216 WLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMMVMLAPLTKELAYPFII-LALWGIIMTG 274 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + + QTD+K LIAYSS++HMG V GI G GA+ M++HGLVSSALF Sbjct: 275 SICLRQTDLKSLIAYSSVSHMGLVASGILIQTPWGFTGAIILMIAHGLVSSALFCLANTN 334 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R H+R + GL +P A + +AN+ LP +GE ++I S+F S Sbjct: 335 YERTHSRTLLLARGLQMILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTI 394 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +L G +++A YSL+++ G + + L+ RE ++ Sbjct: 395 ILTGLGTLITAAYSLYMFLMTQRGPTPTHTI-TLQPSHTREHLLM 438 >gi|25057138|ref|NP_740240.1| NADH dehydrogenase subunit 4 [Polyodon spathula] gi|25006474|dbj|BAC23967.1| NADH dehydrogenase subunit 4 [Polyodon spathula] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 136/359 (37%), Positives = 208/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S I R Y+ + L+ +I AF + + Sbjct: 56 YLGTDPLSTPLLVLTCWLLPLMILASQNHISPEPVSRQRTYITLLVSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ E + Sbjct: 116 IILFYIMFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKEMGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M P ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLIIQYMQPAPLCTWADKIW-WAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L P AS+ A L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMIIMLEP-ASKNLAYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+RLH+R + G+ + Sbjct: 294 HMGLVVAGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERLHSRTLLLARGMQAIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I S+F S+ +L G +++A YSL++Y Sbjct: 354 PLMAAWWFIANLANLALPPLPNLMGELIIITSMFNWSSWTIILTGTGTLITASYSLYMY 412 >gi|29570693|ref|NP_818861.1| NADH dehydrogenase subunit 4 [Pseudobagrus tokiensis] gi|29501076|dbj|BAC67438.1| NADH dehydrogenase subunit 4 [Pseudobagrus tokiensis] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 216/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++G D +S L+VLT +L P IL+S I+ R Y+ L++ +I AF + Sbjct: 54 NHYMGTDPLSTPLLVLTCWLLPLMILASQNHIKTEPINRQRTYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLSAGTYFLFYTLTGSLPLLVALLLLHTDVG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMTTIQYSQ--PLNLHTWGDKIWWAGCLIAFLVKMPLYGIHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R ++ L PL+ P+I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGMMRMMIILDPLSKDLIYPIIA-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGALVLMIAHGLVSSALFCLANTTYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE ++I ++F S VL G +++A YSL+ Sbjct: 351 IIFPLTATWWFIANLANLALPPLPNLMGELMIITTMFNWSPWTLVLTGAGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L+ RE ++ Sbjct: 411 LFLMTQRG-PLPQHIINLQPFHTREHLLM 438 >gi|66276096|ref|YP_238290.1| NADH dehydrogenase subunit 4 [Scleropages formosus] gi|63081747|gb|AAY30615.1| NADH dehydrogenase subunit 4 [Scleropages formosus] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ ++L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHISPEPINRQRSYITLLILLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++ +K Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMT--QKDMG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLIIQHTKPTNLLSWGDKIWWVGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRITIMLDPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLTRGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE +I S+F S V G +++A YSL+++ Sbjct: 353 LPLMATWWFIANLANLALPPLPNLMGELAIITSLFSWSPWTIVSTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMTQRGPTPLHTI-SLHPSHTREHLLM 438 >gi|51038593|ref|YP_063369.1| NADH dehydrogenase subunit 4 [Pelodiscus sinensis] gi|50402835|gb|AAT76644.1| NADH dehydrogenase subunit 4 [Pelodiscus sinensis] Length = 461 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/380 (33%), Positives = 215/380 (56%), Gaps = 14/380 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F ++++ D S L++L+ +LTP IL+S + R ++I ++L+ ++I F Sbjct: 52 FSNHNMAADQTSTPLIILSCWLTPLMILASQNHLSTEPLSRKRTFIITTIILQMLLIMTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + D+++F++ FEA+LIP ++I WG ER+ A F YT GS+ +L A++ + Sbjct: 112 STTDLMMFFVLFEATLIPTLMMITRWGNQMERLNAGTYFLFYTLMGSLPLLVALLSLYSN 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + SI+ + M K ++ W+ +A +F IK+P++ H WLP AHV+AP AGS+ Sbjct: 172 TNSLSILTMQLSPTMLKNTWTNSMWL-LAALTAFMIKMPLYGLHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA I+LK+GGYG IR + L+ + P + L+L II SL+ + QTD+K LIAY Sbjct: 231 ILAAILLKLGGYGIIRIMSTTNFLSKTPYYPFMI-LALWGIIMTSLICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG VT + + GA+ M++HGL SS LF Y+R+H+R + + Sbjct: 290 SSVSHMGLVTAATLTQTEWAYTGAITLMIAHGLTSSLLFCLANTNYERIHSRTLLLTQNM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P ++ ++ NM LP T +GE +I S+F SNT ++ G +++A+Y+L Sbjct: 350 QLLLPLMGTWWLLASLTNMALPPTINLMGELTIITSLFNWSNTTIIITGLGTLITAIYTL 409 Query: 426 WLYRKVVFGVSKCEKVQQLK 445 ++ +G E Q +K Sbjct: 410 HMFSSTQWG----ELPQHIK 425 >gi|213136203|gb|ACJ43748.1| NADH dehydrogenase subunit 4 [Pachytriton brevipes] Length = 458 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 137/391 (35%), Positives = 218/391 (55%), Gaps = 14/391 (3%) Query: 50 FVWSVFDKGRSSFQMIEYYHWIDY------FCSYHLGVDGISILLVVLTTFLTPFCILSS 103 ++W+ F S MI W++ F + + VD +S L+VLT +L P L+S Sbjct: 22 WLWTHFMVNSSIIAMISLT-WLNLPFEFSNFTNTLMSVDPVSSPLLVLTCWLLPLMTLAS 80 Query: 104 WKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS- 158 + ++ N R Y++ +L+ +I AF S ++++FYI FEA+LIP +II WG Sbjct: 81 QEHLKTNPPPRQRTYLVMLTLLQMSLITAFSSTELIMFYIAFEATLIPTLIIITRWGNQV 140 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF-PFSIQYWMWIAFFC 217 ER+ A F YT GS+ +L A++V+ + S+ M P ++ +W+A Sbjct: 141 ERLNAGTYFLFYTLVGSLPLLIALLVLQNSIGSLSLALFNIMEPMMPQTMHQNLWLACLL 200 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG IR L P+ + P Sbjct: 201 AFMVKMPLYRAHLWLPKAHVEAPVAGSMILAAVLLKLGGYGIIRITTILVPMTKEMSYP- 259 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 LSL ++ SL+ M QTD+K LIAYSS++HMG V I V GA+ M+SHG Sbjct: 260 FMVLSLWGVVMTSLICMRQTDLKSLIAYSSVSHMGLVIAAIMIQTPWSVTGAVILMISHG 319 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L+SSALF + Y+R H+R + G +P A ++ ++NM LP + GE Sbjct: 320 LISSALFCLANMNYERTHSRTLLLVRGAQATLPLMATWWLITNLSNMALPPSMNLWGELT 379 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +++S+F S ++ G +++A Y+L+++ Sbjct: 380 IMVSLFNWSPWTILITGTGTLITASYTLYMF 410 >gi|138892607|ref|YP_001127587.1| NADH dehydrogenase subunit 4 [Mauremys mutica] gi|90576892|gb|ABD95488.1| NADH dehydrogenase subunit 4 [Mauremys mutica] gi|118422505|gb|ABK88910.1| NADH dehydrogenase subunit 4 [Mauremys mutica] Length = 458 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 136/406 (33%), Positives = 218/406 (53%), Gaps = 16/406 (3%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVI 126 + F + +LGVD IS ++L+ +LTP I++ ++ R ++ ++L+ +I Sbjct: 48 LTIFSNSYLGVDQISAPFLILSCWLTPMMIMAGQNNLITEPTSRKRTFIFITILLQISLI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AF + ++++F+I FE +L+P VII WGG ER+ A F YT GS+ +L A++ Sbjct: 108 LAFSTTELIMFFIAFETTLLPTLVIITRWGGQMERLNAGTYFLFYTLIGSLPLLVALLAT 167 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 T SI L +S +P S+ W W+A F +F IK+P++ H WLP AHV+AP Sbjct: 168 QTYSGTLSICTL-QLSTYPNSMNPWTHTMWWLALFTAFMIKMPLYGLHLWLPKAHVEAPI 226 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA ++LK+GGYG IR + L P P + L+L +I + + QTD+K Sbjct: 227 AGSMILAAVLLKLGGYGIIRMTMTLAPPLKMLSYPFMM-LALWGVIMTGFICLRQTDLKS 285 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+ HMG V + + GA+ M++HGL SS LF Y+R ++R + Sbjct: 286 LIAYSSVGHMGLVIAATLTRTEWACTGAITLMIAHGLTSSMLFCLANTNYERTNSRTLLL 345 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 + +P + ++ NM LP T +GE +I S+F SNT ++ G +L+A Sbjct: 346 ARNMQLLLPLMGLWWFSASLTNMALPPTINLMGELTIIASLFNWSNTTILMTGLGTLLTA 405 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 Y+L++ +G S + + RE ++ P+A+L V Sbjct: 406 AYTLYMLITTQWGESP-SHTKTIPPTHTREHLLMMLHMVPMALLMV 450 >gi|63259169|gb|AAY40288.1| NADH dehydrogenase subunit 4 [Platysternon megacephalum] Length = 459 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 135/403 (33%), Positives = 226/403 (56%), Gaps = 17/403 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F +++LGVD IS L++LT +L+P +L+S + + R ++ ++L++ +I AF Sbjct: 51 FSNHYLGVDQISAPLLILTCWLSPLMVLASQNHLTKEPVTRKRTFISTIILLQASLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F++ FEA+LIP VII WG ER+ A F YT GS+ +L A++ + + Sbjct: 111 SATELIMFFMAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLIALLSLHTQ 170 Query: 189 KKTSSI----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T S+ ++ +AM ++ W W A +F IK+P++ H WLP AHV+AP AGS Sbjct: 171 NGTLSLCTIQLNQHAMLN-SWTHTMW-WFALLTAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR ++ L PL+ P + L+L ++ S + + QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGIIRIMMTLDPLSKTLSYPFMV-LALWGVVMTSSICLHQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG VT + GA+ M++HGL SS LF Y+R H R + Sbjct: 288 YSSVSHMGLVTAAALTQTHWAHTGAITLMIAHGLTSSMLFCLANTNYERTHNRTLLIARN 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P ++ ++ANM +P T +GE +I S+F SN ++ G +L+A Y+ Sbjct: 348 MQLFLPLMGTWWLLASLANMAIPPTINLVGELTIIASLFNWSNITILMTGLGTLLTATYT 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV----YPIAVLTV 463 L + +G + ++ + RE ++ P+A+L V Sbjct: 408 LHMLSTTQWGKTP-SYIKTIPPTHTREHLLMALHTMPMALLMV 449 >gi|317176729|dbj|BAJ54528.1| NADH dehydrogenase subunit 4 [Paramormyrops sp. CU 6239] gi|317176757|dbj|BAJ54554.1| NADH dehydrogenase subunit 4 [Paramormyrops sp. CU 6246] gi|317176771|dbj|BAJ54567.1| NADH dehydrogenase subunit 4 [Paramormyrops sp. CU 6230] Length = 460 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 219/388 (56%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+S I + R Y+ + L++ +I AF + Sbjct: 54 NHYMATDPLSTPLLVLTCWLLPLMILASQNHINQEPINRQRTYITLLISLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKDLG 173 Query: 191 TSSIIDL--YAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + YA +K + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTMQYYAPTKMTAWGDKIW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 VSHMGLVASGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + +AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ILPLMTAWWFITNLANLALPPLPNLMGELMIITSMFNWSYWTILLTGLGTLITAAYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L+ RE ++ Sbjct: 412 FLMTQRGPTPAHTI-TLQPSHTREHLLM 438 >gi|46135668|ref|YP_003972.1| NADH dehydrogenase subunit 4 [Psephurus gladius] gi|45593294|gb|AAS68201.1| NADH dehydrogenase subunit 4 [Psephurus gladius] Length = 460 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 136/359 (37%), Positives = 208/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S I R Y+ + L+ +I AF + + Sbjct: 56 YLGTDPLSTPLLVLTCWLLPLMILASQNHISPEPINRQRTYITLLVSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E + Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKELGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M P ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLIIQYMQPAPLCTWADKIW-WTACLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L P + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMIVMLEPTSKNLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+RLH+R + G+ + Sbjct: 294 HMGLVAAGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERLHSRTLLLARGMQAIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I S+F S+ VL G +++A YSL+++ Sbjct: 354 PLMAAWWFIANLANLALPPLPNLMGELIIITSMFNWSSWTIVLTGTGTLITASYSLYMF 412 >gi|296099692|gb|ADG95292.1| NADH dehydrogenase subunit 4 [Polypterus palmas polli] Length = 458 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 139/380 (36%), Positives = 213/380 (56%), Gaps = 18/380 (4%) Query: 61 SFQMIEYY---HWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFRE 113 S + +YY W + +Y + D IS L+VLT +L P IL+S I R Sbjct: 38 SLTLFKYYSTAQWSN--LNYMMATDMISTPLIVLTCWLLPLMILASQNHISSEPINRQRS 95 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 Y++ + L++++I AF + +++LFYI FEA+LIP +II WG +ER+ A F YT Sbjct: 96 YIMLLVSLQTLLIMAFSATEIILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTL 155 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPF 228 GS+ +L A++ + TS + L +M+ W +W A +F +K+P++ Sbjct: 156 AGSLPLLVALLYL---YNTSGSLSLISMNLIFIHPNTWANTFLWAACLIAFLVKMPLYGV 212 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA ++LK+GGYG IR + L P A++ A L+L II Sbjct: 213 HLWLPKAHVEAPIAGSMILAAVLLKLGGYGMIRMAIILEP-ATKSLAYPFIILALWGIIM 271 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + M Q+D+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Sbjct: 272 TGSICMRQSDMKSLIAYSSVSHMGLVASGILIQTPWGFTGAIILMIAHGLTSSALFCLAN 331 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 Y+R H+R + G+ MP ++ ++ NM LP +GE ++++S+F S Sbjct: 332 TTYERTHSRTLLLARGMQIIMPLMTTWWLIMSLTNMALPPLPNLMGELMIMVSMFNWSTW 391 Query: 409 VAVLASFGVVLSALYSLWLY 428 +L G +++A YSL+L+ Sbjct: 392 TILLTGTGTLITASYSLYLF 411 >gi|213136091|gb|ACJ43644.1| NADH dehydrogenase subunit 4 [Euproctus montanus] Length = 459 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 211/362 (58%), Gaps = 8/362 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 + ++ VD IS L+VLT +L P L+S ++ N R YMI ++L++ +I AF Sbjct: 51 LTNKYMTVDPISSPLLVLTCWLLPMMALASQNHLKTNPIPRQRTYMIMMILLQASLIIAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S+++++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 111 SSMELIMFYIAFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLILQNS 170 Query: 189 KKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + SII + M S +W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 MGSLSIILINMMEPMMTSNYTDKTLWLACLLAFMVKMPLYGAHLWLPKAHVEAPVAGSMI 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR + L PL + P + L+L ++ SL+ M QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGIIRITIILTPLTKELSYPFLI-LALWGVVMTSLICMRQTDLKALIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V I + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 290 SVSHMGLVIAAIMIQTPWSITGAIILMISHGLISSALFCLANLNYERTHSRTLLLIRGAQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A ++ ++NM LP + GE ++MS+F S ++ G +++A Y+L+ Sbjct: 350 IMLPLMATWWLLANLSNMALPPSMNLWGELTIMMSLFNWSPWTILITGLGTLITASYTLY 409 Query: 427 LY 428 ++ Sbjct: 410 MF 411 >gi|538460|gb|AAA67386.1| presumptive protein 4 [Sceloporus grammicus] Length = 461 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 200/364 (54%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + L +D IS L+ L+ +L P +L+S ++ R +++ +L++ +I F Sbjct: 52 FSTTQLMIDPISAPLLALSCWLLPLMVLASQNHLKSEPMHRKRMFLMTLSILQTFLILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + + LFYI FEA+L+P +II WG +ER+ A F YT S+ +L AI+ + + Sbjct: 112 TATNFTLFYIMFEATLVPTLIIITRWGNQAERLTAGTYFLFYTLASSLPLLIAILYLNSK 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 SSI+ L P W MW A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 NHHSSIMLLQLTQ--PQLTNTWSNIFMWAACLLAFMVKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L P+ + + P + L+L I+ S + M QTD+K LIA Sbjct: 230 MVLAAILLKLGGYGIMRITMSLMPMTPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GAM M++HGL SS LF Y+R HTR + G Sbjct: 289 YSSVSHMGLVVAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 P + ++ + NM LP + +GE L+I+S+F SN +L G +++A+YS Sbjct: 349 FQIIFPLMSTWWLMANLTNMALPPSINLMGELLIIVSLFNWSNPTILLTGLGTLITAMYS 408 Query: 425 LWLY 428 L ++ Sbjct: 409 LHMF 412 >gi|226968709|ref|YP_002808668.1| NADH dehydrogenase subunit 4 [Acipenser gueldenstaedtii] gi|210062327|gb|ACJ06209.1| NADH dehydrogenase subunit 4 [Acipenser gueldenstaedtii] Length = 460 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 136/359 (37%), Positives = 207/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S I R Y+ + L+ +I AF + + Sbjct: 56 YLGTDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRTYITLLVSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E + Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKELGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M P ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLIIQYMQPAPLCTWADKIW-WAACLIAFLVKMPLYGAHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L P + P I L+L II + + QTD+K LIAYS ++ Sbjct: 235 VLLKLGGYGMMRMIIMLEPTSKNLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSPVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+RLH+R + G+ + Sbjct: 294 HMGLVVAGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERLHSRTLLLARGMQAVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I S+F SN +L G +++A YSL++Y Sbjct: 354 PLMATWWFIANLANLALPPLPNLMGELVIITSMFNWSNWTIILTGGGTLITASYSLYMY 412 >gi|2829066|gb|AAD10093.1| NADH ubiquinone oxidoreductase subunit 4 [Xenocyprioides parvulus] Length = 460 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 140/386 (36%), Positives = 210/386 (54%), Gaps = 11/386 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GSI +L A++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSIPLLVALIHSHNLMGTM 175 Query: 193 SIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + I L + +S W W+AF +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 NFIILKIQQPTNSSSWSNHIW-WLAFMMAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 ILLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMIF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P AV + +AN+ LP +GE ++I ++F S L G ++A YSL+++ Sbjct: 354 PLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWAIALTGVGTSITAGYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 414 MSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|30065672|ref|NP_839833.1| NADH dehydrogenase subunit 4 [Acipenser transmontanus] gi|13537010|dbj|BAB40725.1| NADH dehydrogenase subunit 4 [Acipenser transmontanus] Length = 460 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 137/359 (38%), Positives = 208/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S I R Y+ + L+ +I AF + + Sbjct: 56 YLGTDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRTYITLLVSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + E + Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLTLQKELGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M P ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLIIQYMQPAPLCTWADKIW-WAACLIAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L P AS+ A L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMIIMLEP-ASKNLAYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+RLH+R + G+ + Sbjct: 294 HMGLVVAGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERLHSRTLLLARGMQAVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I S+F S+ +L G +++A YSL++Y Sbjct: 354 PLMATWWFIANLANLALPPLPNLMGELVIISSMFNWSSWTIILTGGGTLITASYSLYMY 412 >gi|260766637|gb|ACX50356.1| NADH dehydrogenase subunit 4 [Moxostoma carinatum] Length = 460 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 215/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L VD +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLAVDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|260766673|gb|ACX50380.1| NADH dehydrogenase subunit 4 [Moxostoma cf. macrolepidotum MHD-2009] Length = 460 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 215/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L VD +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLAVDPLSTPLLVLTCWLLPLMILASQNHIDPEPISRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|280978373|ref|YP_003345303.1| NADH dehydrogenase subunit 4 [Avocettina infans] gi|271280518|dbj|BAI53337.1| NADH dehydrogenase subunit 4 [Avocettina infans] Length = 460 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S HL D +S+ L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + Sbjct: 54 SPHLATDPLSMPLLVLSCWLLPLTILASQNHVRSEPTNRQRSYITLLISLQMFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLML--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L PF++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLTIQYTEPFTLSSWGHKMWWAGCLVAFLVKMPLYGLHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMIVVLTPLTKEMAYPFII-LALWGIIMTGAICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + +AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 MILPLMTAWWFIANLANLALPPLPNLMGELMIITSLFNWSYWSIALTGLGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + L+ RE ++ Sbjct: 411 MFLMTQRGPVPTHII-NLEPSHTREHLLI 438 >gi|280978163|ref|YP_003345108.1| NADH dehydrogenase subunit 4 [Cyema atrum] gi|271280683|dbj|BAI53531.1| NADH dehydrogenase subunit 4 [Cyema atrum] Length = 460 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 130/390 (33%), Positives = 211/390 (54%), Gaps = 13/390 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFL 130 + HL D +S L+VL+ +L P I++S ++ R Y+ + L+ ++I F Sbjct: 53 TNTHLATDPLSTPLLVLSCWLLPLMIIASQNHMRLEPINRQRSYITLLISLQMLLIMTFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 113 ATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMV--QK 170 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 ++ L P + W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 DLGTLSMLTMQHTTPLILSSWGDKIWWVGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R + L P+ + P I L+L II + + QTD+K +IAY Sbjct: 231 VLAAVLLKLGGYGMMRMMTILTPMDKELMYPFII-LALWGIIMTGSMCLRQTDLKAMIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI + G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILTQTPWGFTGAIILMIAHGLTSSALFCLANTNYERTHSRTLLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + +AN+ LP +GE +++ S+F S L G +++A YSL Sbjct: 350 QMVLPLMTTWWFIMNLANLALPPLPNLMGELMIMTSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + + L+ RE MV Sbjct: 410 YMFLMTQRGPTPMHII-NLEPSHTREHLMV 438 >gi|148922792|ref|YP_001293810.1| NADH dehydrogenase subunit 4 [Spratelloides delicatulus] gi|148762684|dbj|BAF64123.1| NADH dehydrogenase subunit 4 [Spratelloides delicatulus] Length = 460 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 205/364 (56%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + + GVD +S L+VL+ + P IL+S + R Y+ L++ +I AF Sbjct: 52 FSNTYTGVDPLSAPLLVLSCWCYPLMILASQNHTRGEPTSRQRAYLSLLTSLQAFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++ M Sbjct: 112 GATEVIMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLAMQAS 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T S++ L ++ PF++ W W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 TGTLSMLTLNFLT--PFALSSWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMIRMTSVLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + G Sbjct: 289 YSSVSHMGMVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L P A + +AN+ LP +GE ++I ++F S L G +++A YS Sbjct: 349 LQVLFPLTATWWFIANLANLALPPLPNLMGEIMIITTLFNWSPWTLALTGVGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|308745744|ref|YP_003933863.1| NADH dehydrogenase subunit 4 [Ambystoma barbouri] gi|261888537|gb|ACY06213.1| NADH dehydrogenase subunit 4 [Ambystoma barbouri] Length = 458 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 142/387 (36%), Positives = 221/387 (57%), Gaps = 16/387 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 LG+D IS L++LT +L P IL+S K ++EN R Y+ FL+L+ +I AF S ++ Sbjct: 56 LGLDFISSPLLILTCWLIPLMILASQKHLKENPPTRQRMYISMFLMLQISLILAFTSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG SER+ A F YT GS+ +L A++ + + T S Sbjct: 116 ILFYIAFETTLIPTLIIITRWGNQSERLNAGTYFLFYTLAGSLPLLIALLAL--QNNTGS 173 Query: 194 IIDLYAMS--KFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + LY + K P+ Y ++W + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 L-SLYLLENMKAPYLFLYTNKFLWFSCLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L L P + +I L+L +I SL+ M QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGIIRISLLLTPQKELCYPFMI--LALWGVIMTSLICMRQTDLKSLIAYSSV 290 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V + GA+ M+SHGL+SSALF + Y+R H+R + G+ Sbjct: 291 SHMGLVVAAAIIQTPWSLTGAVILMISHGLISSALFCLANMNYERSHSRTLLLVRGMQAI 350 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + + ++NM LP + GE +++S+F S + G +++A Y+L++Y Sbjct: 351 LPLMGMWWLFVNLSNMALPPSLNLWGELTIMVSLFNWSKWTMLFTGLGTLITATYTLYMY 410 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + ++ RE C++ Sbjct: 411 LMTQRGPAPMH-LNKMTPSYTREHCLM 436 >gi|280978359|ref|YP_003345290.1| NADH dehydrogenase subunit 4 [Hoplunnis punctata] gi|271280773|dbj|BAI53466.1| NADH dehydrogenase subunit 4 [Hoplunnis punctata] Length = 460 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 134/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S I R Y+ + L+ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLSCWLLPLMILASQNHISPEPINRQRSYITLLISLQMLLTLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M +K Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIM--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLVIQHSPPLNMTSWGDKMWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLNPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 MILPLMAAWWFIANLANLALPPLPNLMGEIMIITAMFNWSYWSILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTP-NHIIGLEPSHSREHLLI 438 >gi|189095564|ref|YP_001936270.1| NADH dehydrogenase subunit 4 [Aphrocallistes vastus] gi|150024082|gb|ABR58843.1| NADH dehydrogenase subunit 4 [Aphrocallistes vastus] Length = 471 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 216/368 (58%), Gaps = 2/368 (0%) Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAA 164 +I + ++ ++ +++ +++ AF + ++L+FYI FE+S+IP+ +IIG+WG E+I A Sbjct: 98 TIYHSNKKLLLCLMIIRTILFSAFTTTNLLIFYILFESSIIPLIIIIGIWGSRKEKIRAI 157 Query: 165 YKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIP 224 Y F +YT GS+ + +I+ + + T +I + + Q W++ F +FAIK P Sbjct: 158 YYFLIYTIIGSLPLFLSILTIKNQLNTFNITTIQK-ERLERKRQIWLFSGLFLAFAIKTP 216 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + P+HTWLP AHV+AP GSV LAGI+LK+G YG IRF +P+ P S++ +P+I L ++ Sbjct: 217 LIPWHTWLPLAHVEAPATGSVLLAGILLKLGAYGFIRFTIPILPNTSKFLSPLIIILRIL 276 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 ++ A L S+ Q DIK++IAYSSIAHMG +T IFS G++ ++ HGL ALF Sbjct: 277 SLWSARLNSLRQNDIKRIIAYSSIAHMGIITAAIFSQNTIRKNGSLLLIIRHGLRRPALF 336 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 ++Y+R TR I + G P + + ++ +A+M PG+ FIGE++ ++ +++ Sbjct: 337 ILTSLLYERHKTRLIKNHQGTRLTTPILSTLTIIVRLAHMRTPGSINFIGEYMCLLGLWE 396 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 T+ ++ G++++ Y L LY + + + +LS E + + + Sbjct: 397 LHPTITLIRIIGILITTAYLLLLYIQTRRRKPQIYTNYKTHELSQNEIHRLLSLITPNIL 456 Query: 465 FGIYPVPI 472 GI P PI Sbjct: 457 LGIIPYPI 464 >gi|322422767|ref|YP_004222557.1| NADH dehydrogenase subunit 4 [Paramormyrops gabonensis] gi|317176533|dbj|BAJ54346.1| NADH dehydrogenase subunit 4 [Paramormyrops gabonensis] Length = 460 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 218/388 (56%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+S I + R Y+ + L++ +I AF + Sbjct: 54 NHYMATDPLSTPLLVLTCWLLPLMILASQNHINQEPINRQRTYITLLISLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLTGSLPLLVALLILQKDLG 173 Query: 191 TSSIIDL--YAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + YA +K + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTMQYYAPTKMTAWGDKVW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 VSHMGLVASGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + +AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ILPLMTAWWFITNLANLALPPLPNLMGELMIITSMFNWSYWTILLTGLGTLITAAYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L RE ++ Sbjct: 412 FLMTQRGPTPAHTI-TLHPSHTREHLLM 438 >gi|332886982|dbj|BAK23091.1| NADH dehydrogenase subunit 4 [Microrasbora erythromicron] Length = 460 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 212/387 (54%), Gaps = 9/387 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINSETINRQRMYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQQSTG 173 Query: 191 TSSIIDLYAMSKFPFSIQYWM--WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 T S++ + P + M W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQHSELLPLNSWGHMIWWAGCLIAFLVKMPLYGMHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ Q P I L+L II LV + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVVLDPLSKQLAYPFIV-LALWGIIMTGLVCLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 GHMGLVAGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTSYERTHSRTMILARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P V + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 LPLATVWWFIANLANLALPPLPNLMGELMIITALFNWSPWTIILTGLGTLITANYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + E V + RE ++ Sbjct: 413 LTSQRGPTP-EHVTNIPPSHTREHLLM 438 >gi|299829140|ref|YP_003735152.1| NADH dehydrogenase subunit 4 [Rhinochimaera pacifica] gi|298110939|gb|ADI57888.1| NADH dehydrogenase subunit 4 [Rhinochimaera pacifica] Length = 458 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 136/388 (35%), Positives = 214/388 (55%), Gaps = 8/388 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + +GVD +S L++LT +L P +++S ++ R Y+ + L+ + AF Sbjct: 52 FTNNFVGVDPLSSPLMILTCWLLPLMMMASQNHLKTEPVNRQRTYITLLITLQLSLTLAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVV-MCW 187 SL+M+ FYI FE +LIP ++I WG ER+ A F YT GS+ +L A++ W Sbjct: 112 SSLEMISFYIMFETTLIPTLILITRWGNQKERLNAGIYFLFYTLAGSLPLLVALLTLQNW 171 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S ++ + ++ W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 THSLSLLMLPFTQTQTNDWANILWWAACLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R ++ L PL +Y P I LS+ I+ A + + QTD+K LIAYSS Sbjct: 232 AAILLKLGGYGLMRIIVVLSPLTKEYSYPFII-LSIWGIVMAGSICLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG VT I GAM M+SHGL+SSALF + Y+R+H+R + G+ Sbjct: 291 VSHMGLVTAAILIQTPWSFMGAMLLMISHGLISSALFCLANMNYERIHSRTLLLARGVQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + +AN+ LP ++ +GE L++ S+F S +L G +++ YSL++ Sbjct: 351 ILPLMASWWFLTNLANLALPPSTNLMGELLIMSSLFSWSVWTLILTGLGTLITVCYSLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 Y G++ + L RE M+ Sbjct: 411 YLMTQRGLTPSHLI-TLYPSHTREHLMI 437 >gi|197311138|ref|YP_002154500.1| NADH dehydrogenase subunit 4 [Xenopoecilus sarasinorum] gi|197304242|dbj|BAG69203.1| NADH dehydrogenase subunit 4 [Xenopoecilus sarasinorum] Length = 460 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 136/361 (37%), Positives = 205/361 (56%), Gaps = 16/361 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 +Y L D +S L++LT +L P IL+S + R Y+ L++ +I AF + Sbjct: 54 NYFLATDALSTPLLILTCWLLPLMILASQNHMAHEPSNRQRTYISLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++V+ + Sbjct: 114 TEMIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLVL---QN 170 Query: 191 TSSIIDLYAMSKF-PFSIQ-----YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 ++ + M F P +Q W W + +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 SAGSLSFLTMQFFCPLQMQTCASKLW-WASCLLAFLVKMPLYGAHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVAAGILIQTPWGFSGALILMIAHGLTSSALFCLANSNYERTHSRTMLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A +FT+AN+ LP +GE ++I S+F SN VL G +++A YS Sbjct: 349 LQMALPLLATWWFLFTLANLALPPLPNLMGELMIISSLFNWSNWTLVLTGAGTLITASYS 408 Query: 425 L 425 L Sbjct: 409 L 409 >gi|260766655|gb|ACX50368.1| NADH dehydrogenase subunit 4 [Moxostoma lachneri] Length = 460 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 207/362 (57%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPITRQRLYISLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI + G GA+ M++HGLVSSALF Y+R HTR + GL Sbjct: 291 SVSHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHTRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTITLTGAGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|45388067|ref|NP_991024.1| NADH dehydrogenase subunit 4 [Albula glossodonta] gi|45259581|dbj|BAD12321.1| NADH dehydrogenase subunit 4 [Albula glossodonta] Length = 460 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 219/387 (56%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLD 133 +LG+D +S L+VLT +L P IL++ + +R+ Y+ + L++ +I AF + + Sbjct: 56 YLGIDPLSTPLLVLTCWLLPLTILATQNHAMSEPEYRQRTYITLLISLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP VII WG ER+ A F YT GS+ +L A++++ + T Sbjct: 116 VMMFYVMFEATLIPTLVIITRWGNQMERLDAGVYFMFYTLAGSLPLLVALLLLHKDLGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S++ + + P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTMQYVQ--PLVLSSWGDKIWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L I+ + + Q D+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIVLEPLTKELAYPFIT-LALWGIVMTGAICLRQADLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M+SHGLVSSALF Y+R+H+R + GL Sbjct: 293 SHMGLVVGGILIQTPWGFTGALILMISHGLVSSALFCLANTNYERIHSRTLLLARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A ++AN+ LP F+GE ++IMS+F S+ + G +++A YSL+++ Sbjct: 353 LPLMATWWFFASLANLALPPLPNFVGEVMIIMSLFNWSHWTIIFTGLGTLITATYSLYVF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + L+ RE ++ Sbjct: 413 QATQQGPVPGH-INVLEPSHTREHLLI 438 >gi|317176673|dbj|BAJ54476.1| NADH dehydrogenase subunit 4 [Ivindomyrus marchei] Length = 460 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 216/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 +Y++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NYYMATDPLSTPLLVLTCWLLPLMILASQNHIAPEPINRQRTYITLLISLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKDLG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ + S P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMLTMQYYS--PTKMATWGDKIWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLTPLTKELAYPFII-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + +AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTAWWFIANLANLALPPLPNLMGELMIITSLFNWSYWTIILTGLGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPAPAHTI-TLQPSHTREHLLM 438 >gi|310788872|gb|ADP24439.1| NADH dehydrogenase subunit 4 [Spinibarbus sinensis] Length = 460 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYIMLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S VL G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIVLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|45387983|ref|NP_991063.1| NADH dehydrogenase subunit 4 [Elops saurus] gi|45259626|dbj|BAD12373.1| NADH dehydrogenase subunit 4 [Elops saurus] Length = 460 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 216/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 +++L D +S L+VLT +L P IL+S I R Y+ + L++++I AF + Sbjct: 54 NFYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPVNRQRTYITLLISLQALLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLTL--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 VGTLSMLTIQYSQPITSNSWGSKIWWAACLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L P+ + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLTPMTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R+H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERVHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTILLTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTP-NHIIALEPSHTREHLLM 438 >gi|322422546|ref|YP_004222120.1| NADH dehydrogenase subunit 4 [Myomyrus sp. CU6182] gi|317176421|dbj|BAJ54242.1| NADH dehydrogenase subunit 4 [Myomyrus sp. CU6182] Length = 460 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 9/387 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L++LT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NTYLATDPLSTPLLILTCWLLPLMILASQNHITPEPINRQRTYITLLISLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKDLG 173 Query: 191 TSSIIDL--YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 T S++ + YA +K W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTMQYYAPTKMTMWGDKMWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMTMLAPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S+ L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSHWTIALTGLGTLITAAYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPATAHTI-TLQPSHTREHLLM 438 >gi|219562444|gb|ACL27737.1| NADH dehydrogenase subunit 4 [Palea steindachneri] Length = 461 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 132/388 (34%), Positives = 215/388 (55%), Gaps = 13/388 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F +Y+L D +S L++L+ +LTP IL+S + R ++I + L+ ++I F Sbjct: 52 FSNYNLATDQMSTPLIILSCWLTPLMILASQNHLSTEPLPRKRTFIITAITLQMLLIMTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + D+++F++ FEA+LIP ++I WG ER+ A F YT GS+ +L A++ + Sbjct: 112 STTDLMMFFVLFEATLIPTLMMITRWGNQMERLNAGSYFLFYTLMGSLPLLIALLSL--Y 169 Query: 189 KKTSSIIDLYAMSKFPFSIQYW---MWI-AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T+S+ L K P W MW+ A +F IK+P++ H WLP AHV+AP AGS Sbjct: 170 SNTNSLSILTMQLKPPTFTNTWTNSMWLLAALTAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG IR + L+ + P + L+L II SL+ + QTD+K LIA Sbjct: 230 MILAAILLKLGGYGIIRIMSTTDFLSKTLYYPFMM-LALWGIIMTSLICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG VT + + GA+ M++HGL SS LF Y+R+H+R + Sbjct: 289 YSSVSHMGLVTAATLTQTEWAYTGAITLMIAHGLTSSMLFCLANTNYERIHSRTLLLTQN 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ ++ NM LP T +GE +I S+F SN ++ G +++A Y+ Sbjct: 349 MQLLLPLMGMWWLLASLTNMALPPTINLMGELTIITSLFNWSNPTIIITGLGTLITATYT 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L ++ +G + ++ + RE Sbjct: 409 LHMFSSTQWG-KLPQHIKTITPSHTREH 435 >gi|62002029|gb|AAX58657.1| NADH dehydrogenase subunit 4 [Geotrypetes seraphini] Length = 458 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 208/367 (56%), Gaps = 7/367 (1%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAF 129 F + +L D +S L++LT +LTP I++S + R Y++ F++L+ +I AF Sbjct: 51 FINKYLYTDQLSTPLLILTCWLTPLMIIASQNHMINMPINQQRLYILTFIMLQLSLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 ++++ LFYI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + E Sbjct: 111 SAMELTLFYIMFESTLIPTLIIITRWGNQTERLNAGIYFLFYTLMGSLPLLIALLTLQAE 170 Query: 189 KKTSSIIDLYAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + + + M++ +P W+A F +F +K+P++ FH WLP AHV+AP AGS+ L Sbjct: 171 SGSLMMTSMPFMTQIYPTQTNQIWWVACFIAFLVKLPLYGFHLWLPKAHVEAPVAGSMIL 230 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R + + P P + +SL II S + + Q D+K LIAYSS Sbjct: 231 AAILLKLGGYGIMRISIMMTPFTKDLVFPFLV-ISLWGIIMTSSICLRQADLKSLIAYSS 289 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V I G GA M++HGL SS LF Y+R H+R + G+ Sbjct: 290 VSHMALVIAAIIIQTPWGFTGATILMIAHGLSSSMLFCLANTNYERTHSRTMLLARGMQT 349 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ + NM LP + +GE +I ++F SN +L GV+++ALYSL++ Sbjct: 350 ILPLMATWWLLANLMNMALPPSPNLMGELTIITTLFNWSNITIILTGLGVIITALYSLYI 409 Query: 428 YRKVVFG 434 + G Sbjct: 410 FLTTQQG 416 >gi|310788924|gb|ADP24465.1| NADH dehydrogenase subunit 4 [Cirrhinus microlepis] Length = 460 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPLTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITSLQPFHTREHLLM 438 >gi|89073306|ref|ZP_01159836.1| NADH dehydrogenase I, M subunit [Photobacterium sp. SKA34] gi|89051016|gb|EAR56480.1| NADH dehydrogenase I, M subunit [Photobacterium sp. SKA34] Length = 500 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 148/471 (31%), Positives = 245/471 (52%), Gaps = 12/471 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ FLP + +I S C + F ++ ++T+ L W F M Sbjct: 2 LSLLIFLPMVAALLIGSS----CRKLPFIARSMTLTTLVIESMLVAWIFITHQVHGFSMT 57 Query: 66 EYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E +WI D+ Y + +DGIS+ L+ LT L +L +W + ++ + L+ S Sbjct: 58 ESLNWIPDFGIKYLVSMDGISLSLIGLTCTLFIVAMLVAWHQVNR-WQAFGPLMLLTLSG 116 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 ++GAFL+LD++LFY+F+E LIP++ ++ WGG AA KF L T GS+ ML ++V Sbjct: 117 IMGAFLALDLMLFYVFWELMLIPIYFMLSFWGGKGTKQAALKFVLVTITGSLLMLVSLVA 176 Query: 185 MCWEKKTSSII---DLYAMSKFPFSIQYWMWI--AFFCSFAIKIPMFPFHTWLPNAHVQA 239 + ++ + D + ++ P + + + F +F IKIP FPFH W P+ + + Sbjct: 177 LYIINGNNTGVWTFDYFYLASHPIMGELAIPVVCGFLIAFLIKIPGFPFHFWAPDTYREG 236 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 A S+ L+G+M +G YG +RF L +FP A + L I +YA+L++ Q D+ Sbjct: 237 APAVSLLLSGVMANVGAYGILRFCLAIFPEAMHQMMYIGMALGAIGSLYAALLAFRQKDL 296 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 + +IAYSSI+HM V + IF+ + GA+ Q+++HGL + LF V ++ R + Sbjct: 297 RNVIAYSSISHMNLVVLAIFAWQLQALNGAVIQLIAHGLSVAGLFAVVRMLQARGFSGKF 356 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GGL +P V ++ A++G+PG F GE L++ F S LA+F +VL Sbjct: 357 DEMGGLYKVLPGIGVFLLFIVAASVGIPGLGNFAGEILLLAGSFSVSPLWTSLAAFSIVL 416 Query: 420 SALYSLWLYRKVVFG-VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +Y L Y G +S + ++L DL+ RE+ I + + G+ P Sbjct: 417 GVVYFLRAYGLAFLGPISDDNEQRKLIDLTAREKLTASIIVIGLFWVGLEP 467 >gi|93007405|ref|YP_581746.1| NADH dehydrogenase subunit 4 [Platysternon megacephalum] gi|78157479|gb|ABB22854.1| NADH dehydrogenase subunit 4 [Platysternon megacephalum] Length = 460 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 135/403 (33%), Positives = 226/403 (56%), Gaps = 17/403 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F +++LGVD IS L++LT +L+P +L+S + + R ++ ++L++ +I AF Sbjct: 51 FSNHYLGVDQISAPLLILTCWLSPLMVLASQNHLTKEPVTRKRTFISTIILLQTSLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F++ FEA+LIP VII WG ER+ A F YT GS+ +L A++ + + Sbjct: 111 SATELIMFFMAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLIALLSLHTQ 170 Query: 189 KKTSSI----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T S+ ++ +AM ++ W W A +F IK+P++ H WLP AHV+AP AGS Sbjct: 171 NGTLSLCTIQLNQHAMLN-SWTHTTW-WFALLTAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR ++ L PL+ P + L+L ++ S + + QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGIIRIMMTLDPLSKTLSYPFMV-LALWGVVMTSSICLHQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG VT + GA+ M++HGL SS LF Y+R H R + Sbjct: 288 YSSVSHMGLVTAAALTQTHWAHTGAITLMIAHGLTSSMLFCLANTNYERTHNRTLLIARN 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P ++ ++ANM +P T +GE +I S+F SN ++ G +L+A Y+ Sbjct: 348 MQLFLPLMGTWWLLASLANMAIPPTINLMGELTIIASLFNWSNITILMTGLGTLLTATYT 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV----YPIAVLTV 463 L + +G + ++ + RE ++ P+A+L V Sbjct: 408 LHMLSTTQWGKTP-SYIKTIPPTHTREHLLMALHTMPMALLMV 449 >gi|289535012|ref|YP_003434305.2| NADH dehydrogenase subunit 4 [Palea steindachneri] Length = 460 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 132/388 (34%), Positives = 215/388 (55%), Gaps = 13/388 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F +Y+L D +S L++L+ +LTP IL+S + R ++I + L+ ++I F Sbjct: 52 FSNYNLATDQMSTPLIILSCWLTPLMILASQNHLSTEPLPRKRTFIITAITLQMLLIMTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + D+++F++ FEA+LIP ++I WG ER+ A F YT GS+ +L A++ + Sbjct: 112 STTDLMMFFVLFEATLIPTLMMITRWGNQMERLNAGSYFLFYTLMGSLPLLIALLSL--Y 169 Query: 189 KKTSSIIDLYAMSKFPFSIQYW---MWI-AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T+S+ L K P W MW+ A +F IK+P++ H WLP AHV+AP AGS Sbjct: 170 SNTNSLSILTMQLKPPTFTNTWTNSMWLLAALTAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG IR + L+ + P + L+L II SL+ + QTD+K LIA Sbjct: 230 MILAAILLKLGGYGIIRIMSTTDFLSKTLYYPFMM-LALWGIIMTSLICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG VT + + GA+ M++HGL SS LF Y+R+H+R + Sbjct: 289 YSSVSHMGLVTAATLTQTEWAYTGAITLMIAHGLTSSMLFCLANTNYERIHSRTLLLTQN 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ ++ NM LP T +GE +I S+F SN ++ G +++A Y+ Sbjct: 349 MQLLLPLMGMWWLLASLTNMALPPTINLMGELTIITSLFNWSNPTIIITGLGTLITATYT 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L ++ +G + ++ + RE Sbjct: 409 LHMFSSTQWG-KLPQHIKTITPSHTREH 435 >gi|45439407|ref|NP_990998.1| NADH dehydrogenase subunit 4 [Elops hawaiensis] gi|45259426|dbj|BAD12282.1| NADH dehydrogenase subunit 4 [Elops hawaiensis] Length = 460 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 216/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 +++L D +S L+VLT +L P IL+S I R Y+ + L++++I AF + Sbjct: 54 NFYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPVNRQRTYITLLISLQALLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLTL--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 VGTLSMLTIQYTQPITSNSWGSKIWWAACLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L P+ + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLTPMTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R+H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERVHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTILLTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTP-NHIIALEPSHTREHLLM 438 >gi|5565823|gb|AAD45212.1| NADH dehydrogenase subunit 4 [Marmota monax] Length = 408 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 136/356 (38%), Positives = 203/356 (57%), Gaps = 12/356 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLT +L P I++S + QE + Y++ + L+S +I F ++++ Sbjct: 44 TDPLSSPLLVLTAWLLPLMIMASQSHLTQEPLIRKKLYILMLISLQSFLIMTFSVTELIM 103 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K T S Sbjct: 104 FYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALIYI--QKSTGSLN 161 Query: 194 -IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 II Y S S + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 162 FIISTYQSSALSMSWTNHILWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 221 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR L P+ S P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 222 LKLGGYGMIRISALLHPITSNMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 280 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 281 ALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMTLARGLQSILPL 340 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ T+ N+ LP + IGE +IM+ F SN +L ++++ALYSL++ Sbjct: 341 MATWWVLATLTNLALPPSINLIGELFIIMASFTWSNISIILTGLNMLITALYSLYM 396 >gi|131839360|ref|YP_001096024.1|ND4_20621 NADH dehydrogenase subunit 4 [Cyprinodon rubrofluviatilis] gi|127461928|gb|ABO28470.1| NADH dehydrogenase subunit 4 [Cyprinodon rubrofluviatilis] Length = 460 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 205/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S ++ D +S L+VLT +L P +L+S ++ R Y+ + L+ +I AF Sbjct: 52 FLSPYMASDPLSTPLLVLTCWLLPLMVLASQNHLKMEPTNRQRAYISLLISLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A++V Sbjct: 112 SATEVVMFYVMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVALLVYQSS 171 Query: 189 KKTSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S + L + ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 AGTLSFLTLPHLPHIYLHTWADKLW-WAACLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRVLIVLDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QTVLPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSMWTLILTGLGTLITASYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|15079226|ref|NP_149966.1| NADH dehydrogenase subunit 4 [Microtus kikuchii] gi|14599800|gb|AAK71103.1|AF348082_9 NADH dehydrogenase subunit 4 [Microtus kikuchii] Length = 459 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 144/406 (35%), Positives = 225/406 (55%), Gaps = 21/406 (5%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLDML 135 D +S L+VLTT+L P +L+S I+ E ++ I+ LV L++++I F + +++ Sbjct: 57 SADPLSAPLLVLTTWLLPLMLLASQNHIKKEPEYSKKLYISLLVCLQTLLIMTFSANELI 116 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FEA+LIP ++I WG +ER+ A F YT GSI +L A++ + T + Sbjct: 117 MFYILFEATLIPTLIVITRWGNQTERLNAGIYFLFYTLVGSIPLLIALIYIQNSAGTLNF 176 Query: 195 IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 I L + P + Q W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 177 I-LMTLGSSPIN-QTWSNNILWLACIMAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L P+ ++Y A LSL +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRISVVLDPV-TKYMAYPFILLSLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 294 MALVITAIMIQTPWSFMGATALMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMVFP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++AN+ LP T IGE ++ +S+F SN +L +++++LYS+++ Sbjct: 354 LMATWWIMASLANLALPPTINLIGELVITISMFSWSNPTIILLGTNILITSLYSIYMIVT 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTVFFGIYPVPI 472 G + L+ RE + + PI +LT I P PI Sbjct: 414 TQRG-KLTNHMNNLQPSHTRESTLMTLHILPIILLT----INPKPI 454 >gi|332886870|dbj|BAK22987.1| NADH dehydrogenase subunit 4 [Sewellia lineolata] Length = 460 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHIAPEPIVRQRLYLTLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLILQYSQPLTLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV V +AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFVANLANLALPPLPNLMGELMIITSLFNWSPLTIILTGTGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMTQRGPTP-NHIVGLPPFHTREHLLM 438 >gi|308745772|ref|YP_003934041.1| NADH dehydrogenase subunit 4 [Ambystoma unisexual lineage LJJJ] gi|261888579|gb|ACY06252.1| NADH dehydrogenase subunit 4 [Ambystoma unisexual lineage LJJJ] Length = 458 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 141/387 (36%), Positives = 220/387 (56%), Gaps = 16/387 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 LG+D IS L++LT +L P IL+S K ++EN R Y+ FLVL+ +I AF S ++ Sbjct: 56 LGLDFISSPLLILTCWLLPLMILASQKHLKENPPTRQRMYISMFLVLQISLILAFTSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG SER+ A F YT GS+ +L A++ + + T S Sbjct: 116 ILFYIAFETTLIPTLIIITRWGNQSERLNAGTYFLFYTLAGSLPLLIALLAL--QNNTGS 173 Query: 194 IIDLYAMS--KFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + LY + K P+ Y ++W + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 L-SLYLLENMKTPYLFMYTNKFLWFSCLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L L P + +I L+L + SL+ M QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGIIRISLLLTPQKELCYPFMI--LALWGVTMTSLICMRQTDLKSLIAYSSV 290 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V + GA+ M+SHGL+SSA+F + Y+R H+R + G+ Sbjct: 291 SHMGLVVAAAIIQTPWSLTGAVILMISHGLISSAMFCLANMNYERSHSRTLLLVRGMQAI 350 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + + ++NM LP + GE +++S+F S + G +++A Y+L++Y Sbjct: 351 LPLMGMWWLFVNLSNMALPPSLNLWGELTIMVSLFNWSKWTMLFTGLGTLITATYTLYMY 410 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + ++ RE C++ Sbjct: 411 LMTQRGPAPMH-LNKMTPSYTREHCLM 436 >gi|54310701|ref|YP_133804.1| NADH dehydrogenase subunit 4 [Pangasianodon gigas] gi|53794115|gb|AAU93648.1| NADH dehydrogenase subunit 4 [Pangasianodon gigas] Length = 460 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++G D +S L+VLT +L P IL+S I+ R Y+ L++ +I AF + Sbjct: 54 NLYMGTDPLSTPLLVLTCWLLPLMILASQNHIKTEPITRQRNYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQAERLSAGTYFLFYTLAGSLPLLVALLLL--HQN 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLIIQYSQPLILNSWGDKIWWAACLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R ++ L PL+ P+I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGMMRMMVVLDPLSKNMVYPIIV-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGALVLMIAHGLVSSALFCLANTTYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A V +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 IIFPLAATWWFVSNLANLALPPLPNLMGELVIITAMFNWSPWTLALTGAGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L+ RE ++ Sbjct: 411 LFLMTQRG-PLPQHIINLQPFHTREHLLM 438 >gi|55583422|ref|YP_138327.1| NADH dehydrogenase subunit 4 [Paramesotriton hongkongensis] gi|46981673|gb|AAT07921.1| NADH dehydrogenase subunit 4 [Paramesotriton hongkongensis] gi|51891118|gb|AAU12943.1| NADH dehydrogenase subunit 4 [Paramesotriton hongkongensis] Length = 460 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 207/364 (56%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + + VD S L+VLT +L P L+S + ++ N R Y++ F +L++ +I AF Sbjct: 51 FTNLLMSVDPTSSPLLVLTCWLLPLMTLASQQHLKMNPLPRQRTYLVMFTLLQASLIIAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S ++++FYI FE +LIP VII WG ER+ A F YT GS+ +L A++ + Sbjct: 111 SSTELIMFYIAFETTLIPTLVIITRWGNQVERLNAGTYFLFYTLAGSLPLLIALLALQNS 170 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + S+ Y M P +Q + +W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 TGSLSLALFYIME--PMVLQTYASKILWSACLLAFMVKMPLYGAHLWLPKAHVEAPVAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR L P+ + P L+L ++ SL+ M QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGIIRITTILTPMTKEMSYP-FMILALWGVVMTSLICMRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V I + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 288 YSSVSHMGLVIAAIMIQTPWSITGAVILMISHGLISSALFCLANMNYERTHSRTLLLVRG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P A +V ++NM LP + GE +I+S+F S ++ G +++A Y+ Sbjct: 348 AQATLPLMATWWLVTNLSNMALPPSMNLWGELTIIVSLFNWSPWTILITGTGTLITASYT 407 Query: 425 LWLY 428 L++Y Sbjct: 408 LYMY 411 >gi|253960487|dbj|BAH84967.1| NADH dehydrogenase subunit 4 [Oryzias celebensis] Length = 460 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 202/359 (56%), Gaps = 12/359 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 +Y L D +S L++LT +L P IL+S + R Y+ L++ +I AF + Sbjct: 54 NYFLATDPLSTPLLILTCWLLPLMILASQNHMSHEPINRQRTYISLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++V+ + Sbjct: 114 TEMIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLVL--QNA 171 Query: 191 TSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ L +PF +Q + W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 AGSLSFLTTQFLYPFQMQTYASKLWWAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P +FT+AN+ LP +GE ++I S+F SN L G +++A YSL Sbjct: 351 MVIPLMTTWWFLFTLANLALPPLPNLMGELMIISSLFNWSNWTLTLTGIGTLITASYSL 409 >gi|53686470|ref|YP_097241.1| NADH dehydrogenase subunit 4 [Plethodon cinereus] gi|51980033|gb|AAU20691.1| NADH dehydrogenase subunit 4 [Plethodon cinereus] Length = 449 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 135/386 (34%), Positives = 217/386 (56%), Gaps = 17/386 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++G+D IS L+ LT +L P IL+S +++N + Y+ +L++ +I AF S + Sbjct: 55 YMGLDQISSPLLTLTCWLLPMMILASQHHLKDNPLSRQQTYISMLTILQTALIMAFSSTE 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L ++ + + Sbjct: 115 LILFYIAFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLITLLFLYNSANSL 174 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 SI +Y P + +W+ +F IK+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 175 SISFMYT---SPQTTNKILWLGCLTAFMIKMPLYGTHLWLPKAHVEAPVAGSMILAAVLL 231 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG IR + +FP +++ P I ++L I+ SL+ QTD+K LIAYSS++HMG Sbjct: 232 KLGGYGLIRVMF-MFPPSTELSYPFII-MALWGILMTSLICARQTDLKSLIAYSSVSHMG 289 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + GA+ M+SHG+VSSALF + Y+R H+R + GL +P Sbjct: 290 LVVAATLIQTPWSLTGAVMLMISHGMVSSALFCLANMNYERTHSRTMLLTRGLQMTIPLM 349 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ + NM LP T GE +++ ++F S ++ G +L+A Y+L ++ Sbjct: 350 ATWWLLLNLFNMALPPTPNLWGELMIMTALFNWSPWTIIITGLGTILTAAYTLHMFLMTQ 409 Query: 433 FGVSKCEKVQQLKDLS---LRERCMV 455 G + + LK +S RE C++ Sbjct: 410 QG----QLPKHLKCISPTFTREHCLL 431 >gi|280978401|ref|YP_003345329.1| NADH dehydrogenase subunit 4 [Labichthys carinatus] gi|271280537|dbj|BAI53350.1| NADH dehydrogenase subunit 4 [Labichthys carinatus] Length = 460 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 HL D +S+ L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 HLATDPLSMPLLVLSCWLLPLTILASQNHVRSEPTNRQRSYITLLISLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 116 IIMFYVMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLML--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L PF++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTEPFTLSSWGHKMWWAGCLVAFLVKMPLYGLHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIVVLTPLTKEMAYPFII-LALWGIIMTGAICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMTAWWFIANLANLALPPLPNLMGELMIITSLFNWSYWSIALTGLGTLITAAYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L+ RE ++ Sbjct: 413 LMTQRGPVPTHII-NLEPSHTREHLLI 438 >gi|317097212|ref|YP_004123346.1| NADH dehydrogenase subunit 4 [Silurus meridionalis] gi|302201463|gb|ADL09030.1| NADH dehydrogenase subunit 4 [Silurus meridionalis] Length = 460 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++G D +S L++LT +L P IL+S I+ R Y+ L+ +I AF + Sbjct: 54 NLYMGTDPLSTPLLILTCWLLPLMILASQNHIKTEPISRQRNYITLLASLQIFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQAERLSAGTYFLFYTLAGSLPLLVALLLL--HQN 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T+++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TNTLSMLIIQYSHPLILNSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R ++ L PL+ P+I L+L II + + QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGMMRMMVILDPLSKDLVYPIIA-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGALVLMIAHGLVSSALFCLANTTYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A V +AN+ LP +GE ++I ++F S VL G +++A YSL+ Sbjct: 351 AIFPLTATWWFVSNLANLALPPLPNLMGELVIITAMFNWSPLTLVLTGTGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L+ RE ++ Sbjct: 411 LFLMTQRG-PLPQHIINLQPFHTREHLLM 438 >gi|255506476|ref|YP_003097225.1| NADH dehydrogenase subunit 4 [Moxostoma congestum] gi|254939394|dbj|BAH86703.1| NADH dehydrogenase subunit-4 [Moxostoma congestum] Length = 460 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFVANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|226453510|ref|YP_002791155.1| NADH dehydrogenase subunit 4 [Chamaeleo calyptratus] gi|124055088|gb|ABM89704.1| NADH dehydrogenase subunit 4 [Chamaeleo calyptratus] Length = 449 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 210/379 (55%), Gaps = 13/379 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIGAFLSLD 133 +L +D IS L+ L+ +L P IL+S + Q R ++ L++++ A S + Sbjct: 55 YLSIDQISAPLLTLSYWLLPIAILASQNHLKHTTQMQTRMFLTCLASLQTLLTMALSSTN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LF+I FEA+LIP +II WG ER+ A F YT S+ +L A+++M ++ Sbjct: 115 LILFFIMFEATLIPTMIIITRWGSQKERLTAGMYFMFYTLISSMPLLIALLMMNYQMNNL 174 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +II + +K P +I MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 175 NIILMPTTNK-PNTI---MWLACTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAILL 230 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + P+ L + P I ++L +I SL+ + Q D+K LIAYSS++HMG Sbjct: 231 KLGGYGMMR-ISPMLCLTKTLYYPFII-MALWGMIMTSLICLRQPDLKSLIAYSSVSHMG 288 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V S + GAM M++HG+ SS LF ++Y+R HTR + G+ +P Sbjct: 289 LVVAATMIQTPSSLTGAMILMVAHGITSSMLFCLANMMYERTHTRTLTMMQGIQTTLPLM 348 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + + NM +P T +GE ++ ++F S +L ++A+YS++++ + Sbjct: 349 TAFWLTANLTNMAIPPTINLMGEIMITSTMFNWSPPTLILTGSAATITAIYSMYMFSAIQ 408 Query: 433 FGVSKCEKVQQLKDLSLRE 451 G K +K + RE Sbjct: 409 QG--KTQKDMMIYPPQTRE 425 >gi|119360479|ref|YP_913298.1| NADH dehydrogenase subunit 4 [Cycleptus elongatus] gi|119224977|dbj|BAF41359.1| NADH dehydrogenase subunit-4 [Cycleptus elongatus] Length = 460 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 139/386 (36%), Positives = 213/386 (55%), Gaps = 13/386 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + ++ Sbjct: 57 LATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T + Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTGT 174 Query: 194 IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSMLILQYSQPLTLETWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGLVSSALF Y+R HTR + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHTRTMILARGLQVIF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P V + ++AN+ LP +GE ++I ++F S VL G +++A YSL+L+ Sbjct: 354 PLTTVWWFIASLANLALPPLPNLMGELMIITTLFNWSQWTIVLTGTGTLITAGYSLYLFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 414 MSQRGPTP-NHIMGLSPFHTREHLLM 438 >gi|322422560|ref|YP_004222133.1| NADH dehydrogenase subunit 4 [Marcusenius senegalensis] gi|317176687|dbj|BAJ54489.1| NADH dehydrogenase subunit 4 [Marcusenius senegalensis] Length = 460 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 136/390 (34%), Positives = 214/390 (54%), Gaps = 15/390 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NHYMATDQLSTPLLVLTCWLLPLMILASQNHIAPEPINRQRTYITLLISLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 114 TEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIL---QK 170 Query: 191 TSSIIDLYAMSKF-PFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + + M + P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 DLGTLSMLTMQYYNPTKMTAWGDKIWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMVMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVASGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + +AN+ LP +GE ++I SVF S +L G +++A YSL Sbjct: 350 QMILPLMTAWWFIANLANLALPPLPNLMGELMIITSVFNWSYWTIILTGLGTLITAAYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + + L+ RE ++ Sbjct: 410 YMFLMTQRGPTTAHTI-TLQPSHTREHLLM 438 >gi|260766625|gb|ACX50348.1| NADH dehydrogenase subunit 4 [Moxostoma anisurum] Length = 460 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|209886893|ref|YP_002290749.1| NADH dehydrogenase subunit 4 [Jordanella floridae] gi|209446969|dbj|BAG74834.1| NADH dehydrogenase subunit 4 [Jordanella floridae] Length = 460 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + ++G D IS L++LT +L P IL+S ++ R Y+ + L+ +I AF Sbjct: 52 FLNCYMGSDPISTPLLILTCWLLPLMILASQNHLKLEPVNRQRTYISLMVSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A++ Sbjct: 112 SATEVIMFYVMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVALLTYQSS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S I L M ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSFITLPYLPLMHLHCWADKIW-WAACLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILIILDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S +L G++++A YSL Sbjct: 350 QTVLPLMATWWFIASLANLALPPLPNLMGELMIISSLFNWSMWTLILTGLGMLITASYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|317097167|ref|YP_004123292.1| NADH dehydrogenase subunit 4 [Pelteobagrus vachellii] gi|302201449|gb|ADL09017.1| NADH dehydrogenase subunit 4 [Pelteobagrus vachellii] Length = 460 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 140/402 (34%), Positives = 219/402 (54%), Gaps = 20/402 (4%) Query: 70 WIDYFC-------SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAF 118 W+ YF + ++G D +S L+VLT +L P IL+S I+ R Y+ Sbjct: 41 WLKYFSETGWTSSNLYMGTDPLSTPLLVLTCWLLPLMILASQNHIKTEPINRQRTYITLL 100 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIF 177 L+ +I AF + ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ Sbjct: 101 ASLQMFLIMAFGATEIIMFYIMFEATLIPTLIIITRWGNQAERLSAGTYFLFYTLTGSLP 160 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLP 233 +L A++++ + T S++ + P ++ W W +F +K+P++ H WLP Sbjct: 161 LLVALLLLHTDVGTLSMMTIQYSQ--PMNLHTWGDKIWWAGCLIAFLVKMPLYGIHLWLP 218 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 AHV+AP AGS+ LA I+LK+GGYG +R ++ L PL+ P+I L+L +I + Sbjct: 219 KAHVEAPVAGSMVLAAILLKLGGYGMMRMMIILDPLSKDLVYPIIA-LALWGVIMTGSIC 277 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTD+K LIAYSS++HMG V GI G GA+ M++HGLVSSALF Y+R Sbjct: 278 LRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALVLMIAHGLVSSALFCLANTTYER 337 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 H+R + GL P A + +AN+ LP +GE ++I ++F S +L Sbjct: 338 THSRTMVLARGLQILFPLTATWWFITNLANLALPPLPNLMGELMIITTMFNWSPWTLILT 397 Query: 414 SFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 G +++A YSL+L+ G + + L+ RE ++ Sbjct: 398 GAGTLITAAYSLYLFLMTQRG-PLPQHIINLQPFHTREHLLM 438 >gi|260766664|gb|ACX50374.1| NADH dehydrogenase subunit 4 [Moxostoma pappillosum] Length = 460 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|260766640|gb|ACX50358.1| NADH dehydrogenase subunit 4 [Moxostoma cervinum] Length = 460 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHITGLPPFHTREHLLM 438 >gi|226453406|ref|YP_002726147.1| NADH dehydrogenase subunit 4 [Fundulus diaphanus] gi|215511460|gb|ACJ67910.1| NADH dehydrogenase subunit 4 [Fundulus diaphanus] gi|215511474|gb|ACJ67923.1| NADH dehydrogenase subunit 4 [Fundulus diaphanus] Length = 460 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 134/373 (35%), Positives = 210/373 (56%), Gaps = 21/373 (5%) Query: 67 YYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LE 122 +YH +Y S D +S L+VLT +L P I++S + EN + I+ L+ L+ Sbjct: 50 WYHINNYMAS-----DPLSTPLLVLTCWLLPLMIIASQNHLTTEPENRQRTYISLLISLQ 104 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFA 181 +I AF + +M++FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A Sbjct: 105 IFLILAFSATEMIMFYVMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVA 164 Query: 182 IVVMCWEKKTSSIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 ++V + + + +++ P ++ + W W+A +F +K+P++ H WLP A Sbjct: 165 LLV---YQNSMGSLSYLSLTNLPLTCSNTYADKMW-WMACLVAFPVKMPLYGVHLWLPKA 220 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP AGS+ LA ++LK+GGYG +R ++ L PL + P I L+L +I + + Sbjct: 221 HVEAPIAGSMVLAAVLLKLGGYGMMRIMIVLDPLTKELSYPFII-LALWGVIMTGSICLR 279 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTD+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H Sbjct: 280 QTDLKSLIAYSSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTH 339 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 +R I GL +P ++AN+ LP +GE ++I S+F S +L Sbjct: 340 SRTIILARGLQMILPLMTTWWFFASLANLALPPLPNLMGEIMIITSLFNWSFYTLILTGL 399 Query: 416 GVVLSALYSLWLY 428 G +++A YSL+++ Sbjct: 400 GTLITASYSLYMF 412 >gi|260766676|gb|ACX50382.1| NADH dehydrogenase subunit 4 [Moxostoma cf. poecilurum MHD-2009] Length = 460 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|260766667|gb|ACX50376.1| NADH dehydrogenase subunit 4 [Moxostoma robustum] Length = 460 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 215/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +SI L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSIPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLASLQTFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPPILESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF +Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTVYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|332886800|dbj|BAK22922.1| NADH dehydrogenase subunit 4 [Danio dangila] Length = 460 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 139/389 (35%), Positives = 211/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPIGRQRMYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLFIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVLQHSEPLLLNTWGHKIWWAGCLIAFLVKMPLYGMHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ Q P I L+L II LV + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKQLAYPFIV-LALWGIIMTGLVCLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVGHMGLVAGGILIQTTWGFTGAIILMIAHGLTSSALFCLANTSYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P V + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MVLPLATVWWFIANLANLALPPLPNLMGELMIITALFNWSPWTIALTGMGTLITANYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G S E + L RE ++ Sbjct: 411 MFLTSQRG-SMPEHIMNLPPSHTREHLLM 438 >gi|229002648|dbj|BAH57760.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002650|dbj|BAH57761.1| NADH dehydrogenase subunit 4 [Carassius auratus] Length = 460 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|5835411|ref|NP_007442.1|ND4_12189 NADH dehydrogenase subunit 4 [Ceratotherium simum] gi|3122495|sp|O03204|NU4M_CERSI RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|2052161|emb|CAA69015.1| NADH-ubiquinone oxidoreductase subunit IV [Ceratotherium simum] Length = 459 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 135/381 (35%), Positives = 209/381 (54%), Gaps = 13/381 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P I++S + + + Y+ + L++ +I F + +++ F Sbjct: 59 DPLSAPLLVLTTWLLPLMIMASQHHLSKEPLARKKLYITMLITLQTFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A + F YT GS+ +L A+ + + T S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGFYFLFYTLTGSLPLLIALTHI--QNLTGSLNL 176 Query: 197 L---YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L Y+ P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LLIQYSTQTLPSSWSNAFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL S Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITMILNPLTS-YMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + + GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIVAVLIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A+ ++ ++ N+ LP T +GE V+MS F SN +L ++++ALYSL++ Sbjct: 356 AMWWLLASLTNLALPPTINLVGELFVVMSSFSWSNITIILMGTNIIITALYSLYMLITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERC 453 G + +K RE Sbjct: 416 RG-KYTHHINNIKPSFTRENT 435 >gi|5835606|ref|NP_007623.1|ND4_13977 NADH dehydrogenase subunit 4 [Scyliorhinus canicula] gi|6093573|sp|O79410|NU4M_SCYCA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|3618240|emb|CAA76028.1| NADH 4 [Scyliorhinus canicula] Length = 460 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 140/390 (35%), Positives = 224/390 (57%), Gaps = 11/390 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L +D +S L++LT +L P IL+S I R Y+ + L+ +I AF Sbjct: 52 FSNQYLAIDPLSAPLLILTCWLLPLMILASQNHITPEPLTRQRIYISLLISLQVFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M+LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ M + Sbjct: 112 SATEMILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLIGSLPLLIALLFMQND 171 Query: 189 KKTSSI-IDLYAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S+ I Y+ P ++ ++W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LNTLSMFIIQYSHLPNPSSWANKFW-WTACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L P+ + P I L++ I+ S + + QTD+K +IAY Sbjct: 231 ILAAVLLKLGGYGMMRIIIMLNPITKEMAYPFII-LAIWGIVMTSSICLRQTDLKSMIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V I GA+ M++HGLVSSALF Y+R+H+R + G+ Sbjct: 290 SSVSHMGLVAGAILIQTPWSFAGAITLMIAHGLVSSALFCLANTNYERIHSRTLLLARGV 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ +AN+ LP + +GE L+I S+F SN +L GV+++A YSL Sbjct: 350 QVILPLMATWWLLANLANLALPPSPNLVGELLIISSLFNWSNWTILLTGIGVLITASYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G++ + + L RE ++ Sbjct: 410 YMFLMTQRGLTS-KHLMNLNPSHTREHLLL 438 >gi|119360507|ref|YP_913675.1| NADH denydrogenase subunit 4 [Moxostoma poecilurum] gi|119225397|dbj|BAF41749.1| NADH denydrogenase subunit 4 [Moxostoma poecilurum] Length = 460 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRLYISLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|42632225|ref|NP_976200.1| NADH dehydrogenase subunit 4 [Acipenser dabryanus] gi|41387093|gb|AAS01505.1| NADH dehydrogenase subunit 4 [Acipenser dabryanus] Length = 460 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 137/359 (38%), Positives = 208/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S I R Y+ + L+ +I AF + + Sbjct: 56 YLGTDPLSTPLLVLTCWLLPLMILASQNHISPEPIGRQRTYITLLVSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++V+ E + Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLTGSLPLLVALLVLQKELGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M P ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLIIQYMQPAPLCTWADKIW-WAACLIAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L P + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMIIMLEPSSKNLTYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+RLH+R + G+ + Sbjct: 294 HMGLVVAGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERLHSRTLLLARGMQAIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I S+F S+ +L G +++A YSL++Y Sbjct: 354 PLMATWWFIANLANLALPPLPNLMGELVIISSMFNWSSWTIILTGGGTLITASYSLYMY 412 >gi|133755331|ref|NP_114233.2| NADH dehydrogenase subunit 4 [Conger myriaster] gi|37857729|dbj|BAB47001.2| NADH dehydrogenase subunits 4 [Conger myriaster] Length = 460 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 136/408 (33%), Positives = 224/408 (54%), Gaps = 13/408 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L++L+ +L P I++S K + R Y+ + L+ ++ AF + + Sbjct: 56 YLGTDQLSTPLLILSCWLLPLTIMASQNHMMKEPETRQRTYITLLISLQMLLTLAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG ER+ A F YT GS+ +L A++++ +K+ Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLTGSLPLLVALLIL--QKELG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L PF++ W W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLIIQYNKPFNLISWGDKMWWVACLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRIMVLLDSQMKELSYPFIV-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GIF G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGIFIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQTI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I ++F S ++ G +++A YSL+++ Sbjct: 353 LPLMASWWFIMNLANLALPPLPNLMGEIMIITAMFNWSYWSIIITGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 G + + L+ RE ++ + + + P+PI F Sbjct: 413 LMTQRGPTP-NHITNLEPSHSREHLLISMHLIPVILLTLNPMPIWGAF 459 >gi|260766679|gb|ACX50384.1| NADH dehydrogenase subunit 4 [Moxostoma valenciennesi] Length = 460 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|190349604|ref|YP_001974666.1| NADH dehydrogenase subunit 4 [Typhlops reticulatus] gi|189303963|gb|ACD85895.1| NADH dehydrogenase subunit 4 [Typhlops reticulatus] Length = 453 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 131/378 (34%), Positives = 207/378 (54%), Gaps = 12/378 (3%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVI 126 ++ + + +D IS L+VL+ +L P IL+S S+ + R ++++ L ++ I Sbjct: 48 LNLHSNMYTNIDQISTPLLVLSYWLLPMMILASQSSLMTEPAQRQRLFLLSLTTLHALTI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVM 185 F + + L YI FEA+LIP V+I WG +ER+ A F +YT S+ +L AI+ + Sbjct: 108 LTFTASSLTLMYIAFEATLIPTMVLITRWGHQAERLTAGSYFMIYTLLSSMPLLIAILYI 167 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYW---MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 T L+ + P ++ + +W+A +F +K+PM+ FH WLP AHV+AP A Sbjct: 168 ---DNTLIAPTLFFIPTQPTTLNWHPMALWMACMMAFLVKMPMYGFHLWLPKAHVEAPVA 224 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA I+LKMGGYG IR L L P + +F P+I +SL +I + + QTD+K L Sbjct: 225 GSMVLAAILLKMGGYGMIRILQALPPEKTDFFTPLIV-ISLWGMIMTNATCLQQTDLKSL 283 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSSI HMG V + G+ GAM M++HG SS LF + Y+R +TR + Sbjct: 284 IAYSSIGHMGLVITALLIQTPWGLSGAMLLMIAHGFTSSLLFCLTNMSYERTNTRLLILT 343 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL ++P ++ ++ N+ LP T F E ++ S F SN + G +++A+ Sbjct: 344 KGLFTSLPLMTSWWLLVSLMNIALPPTMNFTAEITIMSSTFNWSNPTIIHLGLGTLITAM 403 Query: 423 YSLWLYRKVVFGVSKCEK 440 Y+L ++ FG + Sbjct: 404 YTLHMFSSTQFGKPSLHQ 421 >gi|310788930|gb|ADP24468.1| NADH dehydrogenase subunit 4 [Scaphognathops bandanensis] Length = 460 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINSEPISRQRSYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVLQYSQPLQLNSWGHMVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVTLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|288909145|dbj|BAI77374.1| NADH dehydrogenase subunit 4 [Malthopsis jordani] Length = 460 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 141/388 (36%), Positives = 218/388 (56%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L VD +S L+VLT +L P IL+S + R ++ ++L+ ++ AF + Sbjct: 54 NLYLTVDPVSAPLIVLTCWLLPLMILASQNHMSTEPINRQRTFLTLLVLLQFLLTLAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 + +LFY+ FEA+LIP ++I WG ER+ A F LYT S+ +L A++++ Sbjct: 114 AEFILFYVMFEATLIPTLILITRWGTQKERLNAGSYFLLYTLVTSLPLLIALLLLQNITG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S++ L P + + W W+ +F +K+PM+ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLTLTYSPSLPLTTYGDKLW-WVGSLLAFLVKMPMYGTHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L+ L PL P I LS+ II S + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGLIRILVVLEPLTQDLCYPFII-LSVWGIIMTSAACLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GIFS G+ GA M++HGL SSALF + Y+R H R + GL Sbjct: 292 VSHMGLVVGGIFSQTTWGLAGATVLMIAHGLTSSALFCLANIQYERTHNRTMVLARGLQS 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 MP ++ T+AN+GLP F+GE + I ++++ S +L G V++A YSL++ Sbjct: 352 TMPLLTTWWLIATLANLGLPPFPNFLGEIMAITALYEWSPFSLILTGAGTVITAAYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + L+ ++ RE ++ Sbjct: 412 FLMSQRGPVP-NHMMTLEPVTAREHLLM 438 >gi|71658102|ref|YP_271985.1| NADH dehydrogenase subunit 4 [Synodus variegatus] gi|41216045|gb|AAR99669.1| NADH dehydrogenase subunit 4 [Synodus variegatus] Length = 459 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 144/387 (37%), Positives = 214/387 (55%), Gaps = 11/387 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S +G D +S L+VLT +L P IL+S ++ R Y+ + L+ +I AF Sbjct: 52 FLSPLMGADSLSTPLLVLTCWLLPLMILASQNHMKPEPINRQRTYISLMISLQVFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+L+P II WG +ER+ A F YT GS+ +L A++ + E Sbjct: 112 GATEMIMFYVMFEATLVPTLFIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLTLQNE 171 Query: 189 KKTSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T SII L +S ++ W W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 VGTLSIITLGYISPLGLSSYADNIW-WVACVMAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA I+LK+GGYG +R L L PL+ P + L+L II + + QTD+K LIAY Sbjct: 231 VLAAILLKLGGYGMMRILPILDPLSKTLAYPFMI-LALWGIIMTGTICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GIF G+ GA M++HGL SSALF Y+R H+R + L Sbjct: 290 SSVSHMGLVAGGIFVQTPWGLTGAFNLMIAHGLASSALFCLANTSYERTHSRTMVLARAL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P V ++AN+ LP +GE ++I S+F SN ++ G +++A YSL Sbjct: 350 QMILPFMTTWWFVASLANLALPPLPNLMGELMIISSLFHWSNFTLLITGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRER 452 +L+ G + E + L RE Sbjct: 410 YLFLITQRGQTP-EHLLNLNPTHTREH 435 >gi|260766646|gb|ACX50362.1| NADH dehydrogenase subunit 4 [Moxostoma duquesnii] Length = 460 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLILESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 LPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|260766652|gb|ACX50366.1| NADH dehydrogenase subunit 4 [Moxostoma hubbsi] Length = 460 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 215/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L +D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLAMDPLSTPLLVLTCWLLPLMILASQNHINPEPIGRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|280978177|ref|YP_003345121.1| NADH dehydrogenase subunit 4 [Rhinomuraena quaesita] gi|271280181|dbj|BAI53194.1| NADH dehydrogenase subunit 4 [Rhinomuraena quaesita] Length = 459 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 130/360 (36%), Positives = 207/360 (57%), Gaps = 13/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L++L+ +L P I++S + R +++ +L+ ++ AF + + Sbjct: 56 YLATDPLSAPLLILSCWLLPLMIIASQNHMSHEPINRQRTFIMMLTLLQIFLVLAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A+++ +K Sbjct: 116 IMMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLIF--QKNLG 173 Query: 193 S----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S II M +S + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMLIIQNTDMYDTSWSTKIW-WVGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K +IAYSS+ Sbjct: 233 AVLLKLGGYGMMRIMMILTPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 SHMGLVAAGILIQTPWGFTGAIVLMIAHGLVSSALFCMANTNYERTHSRTLLLVRGLQTI 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + ++AN+ LP +GE ++I SVF S VL G +++A YSL+++ Sbjct: 352 LPLMATWWFITSLANLALPPLPNLMGELMIITSVFNWSYFTIVLTGLGTLITAGYSLYMF 411 >gi|213135993|gb|ACJ43553.1| NADH dehydrogenase subunit 4 [Cynops cyanurus] Length = 459 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 141/443 (31%), Positives = 235/443 (53%), Gaps = 20/443 (4%) Query: 50 FVWSVFDKGRSSFQMIEYYHWIDY------FCSYHLGVDGISILLVVLTTFLTPFCILSS 103 ++W+ F S M+ W++ F + + VD IS L+VLT +L P ++S Sbjct: 22 WLWTHFTVNSSIIAMMSLA-WLNLPFEFPNFTNTLMHVDPISSPLLVLTCWLLPLLTMAS 80 Query: 104 WKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS- 158 K ++ N R Y++ +L++ ++ AF S ++++FYI FEA+LIP +II WG Sbjct: 81 QKHLKTNPLPRQRTYLVMLTLLQASLVIAFSSTELIMFYIAFEATLIPTLIIITRWGNQV 140 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIA 214 ER+ A F YT GS+ +L A++++ + T S+ + P +Q + +W+A Sbjct: 141 ERLNAGTYFLFYTLAGSLPLLIALLIL--QNSTGSLSLTLMGTMEPVMLQNYSDKILWLA 198 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG IR L P+ + Sbjct: 199 CLIAFMVKMPLYGAHLWLPKAHVEAPVAGSMILAAVLLKLGGYGIIRITTILAPMTKELS 258 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P L+L ++ L+ M QTD+K LIAYSS++HMG V + G GA+ M+ Sbjct: 259 YP-FMILALWGVVMTGLICMRQTDLKSLIAYSSVSHMGLVIAAVMIQTPWGTTGAIILMI 317 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGL+SS+LF + Y+R H+R + G +P A ++ ++NM LP + G Sbjct: 318 SHGLISSSLFCLANMNYERTHSRTLLLVRGAQAMLPLMATWWLIANLSNMALPPSMNLWG 377 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 E ++MS+F S ++ G +++A Y+L+++ G + + + RE + Sbjct: 378 ELTIMMSLFNWSPWTILITGAGALITASYTLYMFLTTQRGPAP-NHMNSINPSHTREHLL 436 Query: 455 VYPIAVLTVFFGIYPVPIRDTFS 477 + + + P I TFS Sbjct: 437 MAMHLAPMLLLILKPAIISGTFS 459 >gi|317176631|dbj|BAJ54437.1| NADH dehydrogenase subunit 4 [Campylomormyrus numenius] Length = 460 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 218/388 (56%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NHYMATDQLSTPLLVLTCWLLPLMILASQNHIAPEPINRQRTYITLLVSLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLILQKDLG 173 Query: 191 TSSIIDL--YAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + YA +K + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTMQYYAPTKTIAWGDKIW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 VSHMGLVASGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + +AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ILPLMTAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTIILTGLGTLITAAYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L+ RE ++ Sbjct: 412 FLMTQRGPTPTHTI-TLQPSHTREHLLM 438 >gi|297625740|ref|YP_003687503.1| NADH dehydrogenase I chain M [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921505|emb|CBL56059.1| NADH dehydrogenase I chain M [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 513 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 152/461 (32%), Positives = 251/461 (54%), Gaps = 32/461 (6%) Query: 64 MIEYYHWIDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSW-----KSIQENFRE---- 113 + E WI + Y L +DG+S +LV+LT L P +++ W + +N + Sbjct: 52 LTEKVSWISPIGAWYALDLDGMSKVLVLLTVILVPIVLIAEWHVGDSSTQNQNAADTTSQ 111 Query: 114 ----------YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYA 163 +M L+LE + F++ D+LLFYIFFEA+LIPM+ +I WGG+ R A Sbjct: 112 VAPARWSSETFMALALMLEGFTLYVFMASDLLLFYIFFEATLIPMYFLIAGWGGARRAAA 171 Query: 164 AYKFFLYTFFGSIFMLFAIVVM----CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF 219 A KF L++ FG +L ++ M K S + A ++ W+++AFF +F Sbjct: 172 AMKFLLFSLFGGFVLLLGVIGMYAVSAGAGKPSLLTADLAGLSMGQGMERWLFVAFFIAF 231 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 AIK PM P HTWLP+A QA S L + K+G +G IRF L FP A+++ +P + Sbjct: 232 AIKAPMVPVHTWLPDAAEQARPGASTLLVATLDKIGTFGMIRFCLAFFPEATKWASPFVL 291 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 L++I+I Y + +++ ++ +L+AY+S++H G++ +GIFS + G++F ML+HG Sbjct: 292 VLAVISIFYGAFMAIGSKNLLRLVAYTSVSHFGFMVLGIFSFTTESIAGSIFYMLAHGFS 351 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 ++A+F VG + DR + I +GG +P A V + +A +GLPG + F GE++++ Sbjct: 352 AAAMFLVVGFLIDRRGSALIADFGGAQKLVPLIAGVYLTAGLATLGLPGLANFAGEYMIM 411 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL-KDLSLRERCMVYPI 458 V+Q +A VL+A+Y + Y++V G + + + + DL+ RER ++ P+ Sbjct: 412 AGVWQRHLVFVAVAVVATVLAAVYIMLSYQRVFTGPATEQSEKHMTHDLTGRERLVIAPL 471 Query: 459 AVLTVFFGIYPVPIRDTFS-------VPLSSIIENYTLKTG 492 L +FFG P P D + V +S + T+K G Sbjct: 472 IALLLFFGCVPKPTFDVVNPTAKEAMVQVSMVDPQPTVKRG 512 >gi|260766607|gb|ACX50336.1| NADH dehydrogenase subunit 4 [Hypentelium etowanum] Length = 460 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 216/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINSEPLNRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGVGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPAFHTREHLLM 438 >gi|260766658|gb|ACX50370.1| NADH dehydrogenase subunit 4 [Moxostoma macrolepidotum] Length = 460 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|322422671|ref|YP_004222236.1| NADH dehydrogenase subunit 4 [Petrocephalus microphthalmus] gi|317176463|dbj|BAJ54281.1| NADH dehydrogenase subunit 4 [Petrocephalus microphthalmus] Length = 460 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 137/399 (34%), Positives = 218/399 (54%), Gaps = 17/399 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L++LT +L P IL+S I R Y+ + L++ +I AF + + Sbjct: 56 YLATDPLSTPLLILTCWLLPLMILASQNHIATEPTNRQRTYITLLITLQASLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FE +LIP +II WG SER+ A F YT GS+ +L A++++ +K Sbjct: 116 LIMFYIMFETTLIPTLIIITRWGNQSERLNAGTYFLFYTLAGSLPLLVALLLL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLIMQYYNPMKMTTWGHNIWWVACITAFLVKMPLYGVHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L P A + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLTPAAKELTYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLAAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQTI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + +AN+ LP +GE +++ S+F S L G++++A YSL+++ Sbjct: 353 LPLMTAWWFIANLANLALPPLPNLMGELMIVTSMFNWSYWTLALTGPGILITAAYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + + L+ RE + + P+ +LT+ Sbjct: 413 LMTQRGPTPTHTI-TLQPSHTREHLLMALHLIPVLLLTL 450 >gi|41387107|gb|AAS01518.1| NADH dehydrogenase subunit 4 [Polyodon spathula] Length = 460 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 135/359 (37%), Positives = 207/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S I R Y+ + L+ +I AF + + Sbjct: 56 YLGTDPLSTPLLVLTCWLLPLMILASQNHISPEPINRQRTYITLLVSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ E + Sbjct: 116 IILFYIMFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKEMGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M P ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLIIQYMQPAPLCTWADKIW-WAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L P AS+ A L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMIIMLEP-ASKNLAYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI GA+ M++HGL SSALF Y+RLH+R + G+ + Sbjct: 294 HMGLVVAGILIQTPWSFTGAIILMIAHGLASSALFCLANTNYERLHSRTLLLARGMQAIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I S+F S+ +L G +++A YSL++Y Sbjct: 354 PLMAAWWFIANLANLALPPLPNLMGELIIITSMFNWSSWTIILTGTGTLITASYSLYMY 412 >gi|239997589|gb|ACS37101.1| NADH dehydrogenase subunit 4 [Gymnopis multiplicata] Length = 456 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 197/362 (54%), Gaps = 17/362 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAF 129 F + + +D +S L++LT +LTP I++S +I F R Y+ F+ L+ +I AF Sbjct: 51 FINKWMMMDQLSTPLILLTCWLTPLMIIASQNHTINMPFNRQRMYITTFIALQLSLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +++LFYI FEA+LIP +II WG ER+ A F YT GS+ +L A++ Sbjct: 111 SSTELILFYIMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLMGSMPLLIALLY---- 166 Query: 189 KKTSSIIDLYAMSKFPFSIQYW-----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T + +M F Q W W A +F +K+P++ H WLP AHV+AP AG Sbjct: 167 --THHSLGSLSMMNLQFPKQMWNMNPFWWTACLTAFMVKMPLYGLHLWLPKAHVEAPIAG 224 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L P +Y P + LSL I+ S + + Q D+K LI Sbjct: 225 SMILAAVLLKLGGYGIMRISIMLTPFTKEYVYPFLI-LSLWGIVMTSSMCLRQADLKSLI 283 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V G GA+ M++HGL SS LF Y+R H R + Sbjct: 284 AYSSVSHMALVISATLIQTPWGFTGAITIMMAHGLTSSMLFCLANTNYERTHNRTMLLTR 343 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G MP ++ ++ + NM LP + +GE +I + F SNT + GV+++ALY Sbjct: 344 GCQTIMPIMSMWWLMANLMNMALPPSPNLMGEITIISATFNWSNTTIIFTGLGVIITALY 403 Query: 424 SL 425 SL Sbjct: 404 SL 405 >gi|260766634|gb|ACX50354.1| NADH dehydrogenase subunit 4 [Moxostoma breviceps] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|260766628|gb|ACX50350.1| NADH dehydrogenase subunit 4 [Moxostoma ariommum] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLASLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFISNLANLALPPLPNLMGELMIITTLFSWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|317176491|dbj|BAJ54307.1| NADH dehydrogenase subunit 4 [Gnathonemus petersii] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/388 (34%), Positives = 219/388 (56%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P +L+S I R Y+ + L++ +I AF + Sbjct: 54 NHYMATDQLSTPLLVLTCWLLPLMVLASQNHIAPEPINRQRTYITLLISLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKDLG 173 Query: 191 TSSIIDL--YAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + YA ++ + + W W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTMQYYAPTETIAWGNKIW-WVGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 VSHMGLVASGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + +AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ILPLMTAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTIILTGLGTLITAAYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L+ RE ++ Sbjct: 412 FLMTQRGPTPAHTI-TLQPSHTREHLLM 438 >gi|260766643|gb|ACX50360.1| NADH dehydrogenase subunit 4 [Moxostoma collapsum] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYVSLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTPSH-ITGLPPFHTREHLLM 438 >gi|229931188|ref|YP_002887620.1| NADH dehydrogenase subunit 4 [Dicerorhinus sumatrensis] gi|229473120|gb|ACQ73093.1| NADH dehydrogenase subunit 4 [Dicerorhinus sumatrensis] Length = 459 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 205/358 (57%), Gaps = 18/358 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S + + + Y+ ++L+ ++I F S++++ F Sbjct: 59 DPLSTPLLILTTWLLPLMIMASQHHLSKEPLTRKKLYITMLVMLQMLLIMTFTSMELISF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLIALIYI--QNLTGSLNL 176 Query: 197 L---YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 L Y+ P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 LLIQYSAQTLPDS---WSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG +R + L PL + Y A LSL +I S + + QTD+K LIAYSS++ Sbjct: 234 ILLKLGGYGMLRITMILNPL-TNYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HM V + + GA M++HGL SS LF Y+R H+R + GL + Sbjct: 293 HMALVIVAVLIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQTLL 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A+ ++ ++ N+ LP T +GE V+MS F SN +L ++++ALYSL++ Sbjct: 353 PLMAMWWLLASLTNLALPPTINLVGELFVVMSSFSWSNITIILMGTNIIITALYSLYM 410 >gi|310788860|gb|ADP24433.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus macrophthalmus] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVTLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTSWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFTANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|38304781|gb|AAR16125.1| NADH dehydrogenase subunit 4 [Polyodon spathula] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/359 (37%), Positives = 207/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VL +L P IL+S I R Y+ + L+ +I AF + + Sbjct: 56 YLGTDPLSTPLLVLKCWLLPLMILASQNHISPEPVSGQRTYITLLVSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ E + Sbjct: 116 IILFYIMFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLTGSLPLLVALLILQKEMGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M P ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLIIQYMQPAPLCTWADKIW-WAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L P AS+ A L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMIIMLEP-ASKNLAYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+RLH+R + G+ + Sbjct: 294 HMGLVVAGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERLHSRTLLLARGMQAIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I S+F S+ +L G +++A YSL++Y Sbjct: 354 PLMAAWWFIANLANLALPPLPNLMGELIIITSMFNWSSWTIILTGTGTLITASYSLYMY 412 >gi|237869179|ref|YP_002907526.1| NADH dehydrogenase subunit 4 [Gnathonemus petersii] gi|237648903|dbj|BAH58996.1| NADH dehydrogenase subunit 4 [Gnathonemus petersii] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/388 (34%), Positives = 219/388 (56%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P +L+S I R Y+ + L++ +I AF + Sbjct: 54 NHYMATDQLSTPLLVLTCWLLPLMVLASQNHIAPEPINRQRTYITLLISLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKDLG 173 Query: 191 TSSIIDL--YAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + YA ++ + + W W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTMQYYAPTETIAWGNKIW-WVGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 VSHMGLVASGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + +AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ILPLMTAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTIILTGLGTLITAAYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L+ RE ++ Sbjct: 412 FLMTQRGPTPAHTI-TLQPSHTREHLLM 438 >gi|317176659|dbj|BAJ54463.1| NADH dehydrogenase subunit 4 [Isichthys henryi] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 214/377 (56%), Gaps = 11/377 (2%) Query: 61 SFQMIEYYHWIDYFCSYH-LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYM 115 SF ++Y + S H L D +S L+VLT +L P IL+S I R Y+ Sbjct: 38 SFNWLKYNTETGWATSNHYLATDQLSTPLLVLTCWLLPLMILASQNHITPEPINRQRTYI 97 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFG 174 + L++ +I AF + ++++FYI FEA+LIP +II WG +ER+ A F YT G Sbjct: 98 TLLISLQTFLIMAFGATEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAG 157 Query: 175 SIFMLFAIVVMCWEKKTSSIIDL--YAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 S+ +L A++++ + T S++ + Y +K + + W WI+ +F +K+P++ H W Sbjct: 158 SLPLLVALLILQKDLGTLSMLTMQYYNPTKMIAWGDKIW-WISCLLAFLVKMPLYGVHLW 216 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + P I L+L II Sbjct: 217 LPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMTIMLSPLTKEMAYPFII-LALWGIIMTGS 275 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 V + QTD+K LIAYSS++HMG V GI G GA+ M++HGLVSSALF Y Sbjct: 276 VCLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNY 335 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R H+R + GL +P + +AN+ LP +GE ++I S+F S + Sbjct: 336 ERTHSRTLLLARGLQTILPLMTAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTLL 395 Query: 412 LASFGVVLSALYSLWLY 428 L G +++A YSL+++ Sbjct: 396 LTGVGALITAAYSLYMF 412 >gi|288908837|dbj|BAI77088.1| NADH dehydrogenase subunit 4 [Caulophryne pelagica] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/397 (35%), Positives = 219/397 (55%), Gaps = 10/397 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT ++ P I++S + R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSSPLLVLTCWIQPLAIIASQNHMTTEPLVRQRTYLALLASLQLFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEVLMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDL-YAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L Y+ P ++ + W W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSNPTTPDAYTTKLW-WVGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG IR L+ L PL + P + L+L ++ AS V + QTD+K LIAYSS Sbjct: 233 AAILLKLGGYGMIRVLIVLDPLTKELCYPFVV-LALWGVLMASSVCLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI + G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVAAGILTQTPWGFTGALVLMIAHGLTSSALFCLANTNYERTHSRTMVLARGMQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 MP A + +AN+ LP +GE L++ S+F S VL G +++A YSL++ Sbjct: 352 LMPLMASWWFIACLANLALPPLPNLMGELLILTSLFSWSPWTIVLTGAGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + G + + + M +A LT+ Sbjct: 412 FLMTQRGPTPTHLLALEPSHTREHLLMALHLAPLTLL 448 >gi|106922059|gb|ABF83435.1| NADH dehydrogenase subunit 4 [Indotestudo elongata] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 205/371 (55%), Gaps = 14/371 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F +++LGVD IS L+ L+ +LTP IL+S + R + + L+ +I AF Sbjct: 51 FSNHYLGVDRISAPLLTLSCWLTPLMILASQNHLTTEPISRKRTFTATIIFLQISLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE +LIP +II WG ER+ A F YT GS+ +L A+ M + Sbjct: 111 SATELIMFFITFETTLIPTLIIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSYMQTQ 170 Query: 189 KKTSSIIDLYAMS-KFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T + Y M P + W W A +F IK+P++ H WLP AHV+AP AG Sbjct: 171 NGT---LSTYTMQLNQPTMMTSWAHSTWWFALLIAFMIKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG IR + L PL+ P + ++L ++ S + + QTD+K LI Sbjct: 228 SMILAAVLLKLGGYGIIRITMTLNPLSKTLSYPFMT-MALWGVVMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V + + GA+ M++HGL SS LF Y+R H+R +F Sbjct: 287 AYSSVSHMGLVIAAALTQTQWSYTGAITLMIAHGLTSSMLFCLANTNYERTHSRMLFLTR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 + +P + ++ ++ NM LP T +GE +I S+F SNT ++ G++++A Y Sbjct: 347 NMQLLLPLMGLWWLLASLTNMALPPTINLMGELTIITSLFNWSNTTILMTGLGMLITATY 406 Query: 424 SLWLYRKVVFG 434 +L++ +G Sbjct: 407 TLFMLITTQWG 417 >gi|119365177|ref|YP_913428.1| NADH dehydrogenase subunit 4 [Barbonymus gonionotus] gi|119225117|dbj|BAF41489.1| NADH dehydrogenase subunit 4 [Barbonymus gonionotus] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 219/399 (54%), Gaps = 17/399 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGIHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVL 461 ++ G + + L+ RE ++ P+A+L Sbjct: 411 MFLMSQRGPAP-NHITGLQPFHTREHLLMTLHLIPVALL 448 >gi|62184322|ref|YP_220754.1| NADH dehydrogenase subunit 4 [Balaenoptera borealis] gi|62086632|dbj|BAD91729.1| NADH dehydrogenase subunit 4 [Balaenoptera borealis] Length = 459 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/356 (37%), Positives = 208/356 (58%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKS-IQE---NFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S I+E + Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLIKEPPVRKKLYITMLITLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+V + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALVYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P SI + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAKPLSISWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MSVF SN +L +V++ALY+L++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSVFSWSNPTILLMGANIVITALYTLYM 410 >gi|89257326|ref|YP_514626.1| NADH dehydrogenase subunit 4 [Rhodeus uyekii] gi|71979972|gb|AAZ57213.1| NADH dehydrogenase subunit 4 [Rhodeus uyekii] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 211/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + HL D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLHLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYLSLLASLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSVLLTQYAQPLVLDSWSDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V I G GA+ ML+HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGAILIQTPWGFTGAIILMLAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P V + +AN+ LP +GE ++I ++F S T L G +++A YSL+ Sbjct: 351 MVLPLATVRWFISNLANLALPPLPNLMGELMIITTLFNWSPTTIALTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L RE ++ Sbjct: 411 MFLMTQRGPAP-NHIINLPPFHTREHLLM 438 >gi|169666017|gb|ACA63666.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus yimenensis] gi|169666019|gb|ACA63667.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus yimenensis] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRSYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V G+ G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGVLIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAMWWLTANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|229002632|dbj|BAH57752.1| NADH dehydrogenase subunit 4 [Carassius auratus] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVLQYSQPLQLNSWGHMIWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 IIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|260766616|gb|ACX50342.1| NADH dehydrogenase subunit 4 [Ictiobus meridionalis] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/387 (36%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 MIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLALESWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILVQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFVANLANLALPPLPNLMGELMIISTMFNWSPWTIALTGTGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPAPSH-IMGLSPFHTREHLLM 438 >gi|53793990|ref|YP_112473.1| NADH dehydrogenase subunit 4 [Chlorurus sordidus] gi|53749084|dbj|BAD52427.1| NADH dehydrogenase subunit 4 [Chlorurus sordidus] Length = 459 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 204/360 (56%), Gaps = 14/360 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 +G D +S L+VL+ +L P IL+S + R Y+ + L++ +I AF + ++ Sbjct: 57 MGTDPLSGPLLVLSCWLLPLMILASQNHLASEPISRQRTYISLMIALQAFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++VM T S Sbjct: 117 IMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLVM--HNTTGS 174 Query: 194 IIDLY-----AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + L ++ ++ + W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSTLTLQFTPTLTTTSYANKA-CWAACLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGIIRVLTILEPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKALIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI S G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVVAGILSQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMA 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + ++AN+ LP + E +VI ++F S +L G +++A YSL+++ Sbjct: 353 LPLMATSWFIASLANLALPPLPNLMAELMVICTMFDWSPWTLILTGAGTLITAAYSLYMF 412 >gi|310788866|gb|ADP24436.1| NADH dehydrogenase subunit 4 [Hypsibarbus vernayi] Length = 452 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 48 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYITLLTSLQTFLIMAFKATE 107 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 108 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 165 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 166 TLSMLVLQYSQPLQLNSWGHMIWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 225 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 226 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 284 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 285 SHMGLVAGGILIQTPWGFSGAIILMVAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 344 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 345 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFSWSPWTILLTGLGTLITAGYSLYMF 404 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 405 LMSQRGPTP-NHITGLQPFHTREHLLM 430 >gi|256985415|ref|YP_003162845.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus grahami] gi|238683593|gb|ACR54079.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus grahami] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRSYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAMWWFTANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|14142005|ref|NP_115385.1|ND4_15668 NADH dehydrogenase subunit 4 [Dogania subplana] gi|14030547|gb|AAK52951.1|AF366350_10 NADH dehydrogenase subunit 4 [Dogania subplana] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/382 (34%), Positives = 214/382 (56%), Gaps = 16/382 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S++L D +S L++L+ +LTP IL+S + R ++I ++L++++I F Sbjct: 52 FSSHNLATDQMSTPLIILSCWLTPLMILASQNHMSMEPLPRKRTFIITMVILQTLLITTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + D+++F+IFFEA+LIP ++I WG ER+ A F YT S+ +L A++ + + Sbjct: 112 STTDLMMFFIFFEATLIPTLMMITRWGNQMERLNAGTYFLFYTLMWSLPLLIALLSLHYN 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW---MWI-AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + I + K P W MW+ A +F +P++ H WLP AHV+AP AGS Sbjct: 172 MNSLFIPTMQL--KPPTMTNTWTNSMWLLAVLTAFTQSMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG IR +L ++ + P + L+L II SL+ + QTD+K LIA Sbjct: 230 MILAAILLKLGGYGIIRIMLTTNFMSKTLYYPFMV-LALWGIIMTSLICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG VT + + GA+ M++HGL SS LF + Y+R+H+R + Sbjct: 289 YSSVSHMGLVTAATLTQTEWAYTGAITLMIAHGLTSSMLFCLANMNYERIHSRTLLLTQN 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P ++ ++ NM LP T +GE +I S+ SNT ++ G +++A+Y+ Sbjct: 349 MQLLLPLMGTWWLLASLTNMALPPTINLMGELTIITSLINWSNTTIIITGLGTLITAIYT 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKD 446 L ++ +G E Q +K Sbjct: 409 LHMFSSTQWG----ELPQHIKT 426 >gi|255506434|ref|YP_003097186.1| NADH dehydrogenase subunit 4 [Ictiobus bubalus] gi|254939380|dbj|BAH86690.1| NADH dehydrogenase subunit-4 [Ictiobus bubalus] gi|260766613|gb|ACX50340.1| NADH dehydrogenase subunit 4 [Ictiobus cyprinellus] Length = 460 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/387 (36%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 MIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLALESWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILVQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFVANLANLALPPLPNLMGELMIISTMFNWSPWTIALTGTGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPAP-SHIMGLSPFHTREHLLM 438 >gi|5565827|gb|AAD45216.1| NADH dehydrogenase subunit 4 [Marmota marmota] Length = 408 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 134/356 (37%), Positives = 204/356 (57%), Gaps = 12/356 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L++LT +L P I++S + QE + Y++ + L+S +I F + ++++ Sbjct: 44 TDPLSSPLLILTAWLLPLMIMASQSHLTQEPLIRKKLYILMLISLQSFLIMTFSATELIM 103 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K T S Sbjct: 104 FYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALIYI--QKSTGSLN 161 Query: 194 -IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 II Y S P S + +W+A +F +K+P++ WLP AHV+AP AGS+ LA I+ Sbjct: 162 FIISAYQSSVLPMSWTNHILWLACIMAFMVKMPLYGLRLWLPKAHVEAPIAGSMVLAAIL 221 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P+ S P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 222 LKLGGYGMVRISTFLCPITSNMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 280 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 281 ALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERTHSRTMTLARGLQSILPL 340 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ T+AN+ LP + +GE +IM+ F SN +L ++++ALYSL++ Sbjct: 341 MATWWILATLANLALPPSINLVGELFIIMASFTWSNISIILTGLNMLITALYSLYM 396 >gi|317176701|dbj|BAJ54502.1| NADH dehydrogenase subunit 4 [Mormyrops anguilloides] Length = 460 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 209/389 (53%), Gaps = 15/389 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF Sbjct: 52 FSNPYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPINRQRTYITLLVSLQTFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 112 GATEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--- 168 Query: 189 KKTSSIIDLYAMSKF-PFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +K + + M + P + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 169 QKDLGTLSMLTMQYYNPTKMTTWGDKIWWTGCLLAFLVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRMMIMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+ HMG V GI G GA+ M++HGLVSSALF Y+R H+R + Sbjct: 288 AYSSVGHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + +AN+ LP +GE ++I S+F S L G +++A Y Sbjct: 348 GLQTVLPLMTAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTIALTGLGTLITAAY 407 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL+++ G + + L+ RE Sbjct: 408 SLYMFLMTQRGPTPTHTI-TLQPTHTREH 435 >gi|5835439|ref|NP_007468.1|ND4_12264 NADH dehydrogenase subunit 4 [Dasypus novemcinctus] gi|3122507|sp|O21334|NU4M_DASNO RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|2252510|emb|CAA72520.1| NADH4 [Dasypus novemcinctus] Length = 459 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 205/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S K + Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMIIASQSHLIKETTTRKKLYISMLITLQALLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP ++I WG +ER+ A + F YT GS+ +L V++ + + T ++ Sbjct: 119 YILFEATLIPTLILITRWGNQTERLNAGFYFLFYTLAGSLPLL---VILLYMQNTMGSLN 175 Query: 197 LYAMSKFPFSIQY-W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + FP ++ + W MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 MLLIQYFPQTLTHTWTAKLMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P + P + LSL ++ + + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILEPTTTSMSYPFMM-LSLWGMVMTTRICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANTNYERTHSRTMILARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV M+ F+ SN + ++++ALYSL++ Sbjct: 355 MASWWLLASLTNLALPPTINLIGELLVTMTTFKWSNLTILALGLNMLITALYSLYM 410 >gi|310788898|gb|ADP24452.1| NADH dehydrogenase subunit 4 [Barbus fasciolatus] Length = 460 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/391 (35%), Positives = 216/391 (55%), Gaps = 13/391 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + +L D +S L+VLT +L P +L+S I R Y++ L++ +I AF Sbjct: 52 FSNAYLATDPLSTPLLVLTCWLLPLMLLASQNHINPEPINRQRTYIMLLTSLQTFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 GATEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 NSTGTLSMLTIQYAQPLQLNSWGHMIWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMMRMMIMLDPLSKELAYPFIA-LALWGVIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V GI G GA+ M++HGLVSSALF Y+R H+R + G Sbjct: 289 YSSVSHMSLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L P AV + +AN+ LP F+GE ++I ++F S +L G +++A YS Sbjct: 349 LQVIFPLTAVWWFIANLANLALPPLPNFMGEIMIITTLFNWSPWTILLTGLGTLITAAYS 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+++ G + + L+ RE ++ Sbjct: 409 LYMFLMSQRGPTPIH-IMGLQPYHTREHLLM 438 >gi|114052872|ref|YP_740092.1| NADH dehydrogenase subunit 4 [Biwia zezera] gi|111924867|dbj|BAF02814.1| NADH dehydrogenase subunit 4 [Biwia zezera] Length = 460 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/389 (35%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +LG D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLGTDPLSTPLLVLTCWLLPLMILASQNHINPEPLNRQRLYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYAQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV V +AN+ LP +GE ++I ++F S VL G +++A YSL+ Sbjct: 351 LIFPLTAVWWFVANLANLALPPLPNLMGELMIITTLFNWSPWTIVLTGAGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L+ RE ++ Sbjct: 411 MFLMSQRGPTPSH-IMKLQPFHTREHLLM 438 >gi|5835788|ref|NP_008597.1|ND4_15063 NADH dehydrogenase subunit 4 [Carassius auratus] gi|6647611|sp|O78687|NU4M_CARAU RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|3288696|dbj|BAA31247.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002614|dbj|BAH57747.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002626|dbj|BAH57749.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002628|dbj|BAH57750.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002630|dbj|BAH57751.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002634|dbj|BAH57753.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002636|dbj|BAH57754.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002638|dbj|BAH57755.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002640|dbj|BAH57756.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002644|dbj|BAH57758.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002646|dbj|BAH57759.1| NADH dehydrogenase subunit 4 [Carassius auratus] Length = 460 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|38304753|gb|AAR16099.1| NADH dehydrogenase subunit 4 [Amia calva] Length = 461 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 208/375 (55%), Gaps = 16/375 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + H+ D +S L++LT +L P +L+S + R Y+ + L+ +I AF + Sbjct: 54 NLHMATDPLSTPLLILTCWLLPLMLLASQNHLHLEPLNRQRTYITLLVSLQVFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 114 TEIILFYIMFEATLIPTLVIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLTL---QK 170 Query: 191 TSSIIDLYAMSKFP-FSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + + M P S+ + W W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 DIGTLSMLIMQHAPTLSLTSSGSKIW-WAACLVAFLVKMPLYGAHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R ++ L PL Q P I L+L II A + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGMMRIMVMLSPLTEQLAYPFII-LALWGIIMAGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVAAGILIQTPWGFTGAIVLMIAHGLVSSALFCLANTNYERTHSRTLLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A + +AN+ LP +GE ++I S+F S VL G +++A YS Sbjct: 349 LQILLPLMASWWFIANLANLALPPLPNLMGELIIITSMFNWSPWTIVLTGLGTLITASYS 408 Query: 425 LWLYRKVVFGVSKCE 439 L+++ G + Sbjct: 409 LYMFLMTQRGPTPAH 423 >gi|260766619|gb|ACX50344.1| NADH dehydrogenase subunit 4 [Ictiobus niger] Length = 460 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/387 (36%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 MIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLALESWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILVQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFVANLANLALPPLPNLMGELMIISTMFNWSPWTIALTGTGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPAP-SHIMGLSPFHTREHLLM 438 >gi|84488646|ref|YP_448838.1| NADH dehydrogenase subunit 4 [Indotestudo elongata] gi|67005659|gb|AAY62455.1| NADH dehydrogenase subunit 4 [Indotestudo elongata] Length = 459 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 205/371 (55%), Gaps = 14/371 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F +++LGVD IS L+ L+ +LTP IL+S + R + + L+ +I AF Sbjct: 51 FSNHYLGVDRISAPLLTLSCWLTPLMILASQNHLTTEPISRKRTFTATIIFLQISLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE +LIP +II WG ER+ A F YT GS+ +L A+ M + Sbjct: 111 SATELIMFFITFETTLIPTLIIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSYMQTQ 170 Query: 189 KKTSSIIDLYAMS-KFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T + Y M P + W W A +F IK+P++ H WLP AHV+AP AG Sbjct: 171 NGT---LSTYTMQLNQPTMMTSWAHSTWWFALLIAFMIKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG IR + L PL+ P + ++L ++ S + + QTD+K LI Sbjct: 228 SMILAAVLLKLGGYGIIRITMTLNPLSKTLSYPFMT-MALWGVVMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V + + GA+ M++HGL SS LF Y+R H+R +F Sbjct: 287 AYSSVSHMGLVIAAALTQTQWSYTGAITLMIAHGLTSSMLFCLANTNYERTHSRMLFLTR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 + +P + ++ ++ NM LP T +GE +I S+F SNT ++ G++++A Y Sbjct: 347 NMQLLLPLMGLWWLLASLTNMALPPTINLMGELTIITSLFNWSNTTILMTGLGMLITATY 406 Query: 424 SLWLYRKVVFG 434 +L++ +G Sbjct: 407 TLFMLITTQWG 417 >gi|229002612|dbj|BAH57746.1| NADH dehydrogenase subunit 4 [Carassius auratus] Length = 460 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLQLNSWGHMIWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|119360549|ref|YP_913454.1| NADH dehydrogenase subunit 4 [Labeo senegalensis] gi|119225145|dbj|BAF41515.1| NADH dehydrogenase subunit 4 [Labeo senegalensis] Length = 460 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPVSRQRSYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHTMWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S VL G +++A YSL+++ Sbjct: 353 FPLTAAWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIVLTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTPGH-ITGLQPFHTREHLLM 438 >gi|31324902|ref|NP_852160.1| NADH dehydrogenase subunit 4 [Sphenodon punctatus] gi|30984417|gb|AAP42714.1| NADH dehydrogenase subunit 4 [Sphenodon punctatus] Length = 460 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/359 (38%), Positives = 209/359 (58%), Gaps = 8/359 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE----YMIAFLVLESMVIGAF 129 F S + G+D IS L+VLTT+L P L+S S+++ E ++I +L++ ++GAF Sbjct: 52 FSSPYTGLDHISSPLLVLTTWLLPLMTLASQNSLKKEPYERKQLFLITLTLLQTFLLGAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + D+ LFYI FEA+LIP +II WG ER+ A F YT S+ +L A++ + Sbjct: 112 CATDLALFYIMFEATLIPTLIIITRWGNQPERLNAGMYFLFYTLTASLPLLIALLTLYNL 171 Query: 189 KKTS--SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T +I+ + P S +++W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NNTLLITILHFLPQNTNPPSTSFFLWGACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG IR + L P+ P I LSL ++ SL+ + QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGIIRTITMLTPMTKTMSIPFIT-LSLWGVVMTSLICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG VT + + GA+ M++HGLVSSALF Y+R++ R + + Sbjct: 291 SVSHMGLVTAASLIHTEWSLTGAIILMVAHGLVSSALFCLSNFNYERINNRTLLLVRSMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 MP + ++F + NM LP T +GE L+I ++F S ++ GVVL+A YSL Sbjct: 351 LIMPLLSTWWLLFNLLNMALPPTINLMGELLIITAMFNWSPPTILITGAGVVLTACYSL 409 >gi|296940275|ref|YP_003667956.1| NADH dehydrogenase subunit 4 [Hydrosaurus amboinensis] gi|296531290|dbj|BAJ08134.1| NADH dehydrogenase subunit 4 [Hydrosaurus amboinensis] Length = 455 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/388 (34%), Positives = 213/388 (54%), Gaps = 14/388 (3%) Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMI 116 S Q + + + + HL +D IS L+VL+++L P +L+S ++ R +++ Sbjct: 38 SLQWLNQQQPTNAYSNQHLAIDAISAPLMVLSSWLLPVMMLASQNHLKHEPLTRKRIFLL 97 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGS 175 +L+++++ A S ++LFY+ FEA+LIP +II WG ER+ A F YT GS Sbjct: 98 NLAMLQTLLMIALSSTSLILFYMAFEATLIPTLIIITRWGSQLERLTAGTYFMFYTLTGS 157 Query: 176 IFMLFAIVVMCWEKKTS----SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 + +L A++ + ++ S++ L M+ F +I +W+A +F +K+P++ H W Sbjct: 158 MPLLTALLYINNLNHSNLLMMSLMPLDKMNHFTNNI---LWLACIMAFLVKMPLYGLHLW 214 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP AHV+AP AGS+ LA I+LK+GGYG IR L P + P I L+L I L Sbjct: 215 LPKAHVEAPIAGSMVLAAILLKLGGYGIIRISTMLHP-NDKLTYPFIV-LALWGAIMTGL 272 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 M QTD+K LIAYSS+ HMG VT + GAM M++HGL SS +F ++Y Sbjct: 273 TCMRQTDLKALIAYSSVGHMGLVTAAALIQTPWSLMGAMTLMIAHGLTSSMMFCLANMLY 332 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R +TR + G+ MP ++ T+ N+ LP T IGE +I S++ S Sbjct: 333 ERTNTRTMIMMRGMQKIMPLMTTYWLIATLTNLALPPTINLIGELQIIYSLYNWSPPTLA 392 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCE 439 L++ ++A+YSL+++ G + + Sbjct: 393 LSATAATITAIYSLYMFSATQQGATPKD 420 >gi|310788884|gb|ADP24445.1| NADH dehydrogenase subunit 4 [Henicorhynchus lineatus] Length = 460 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLM--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-SHITGLQPFHTREHLLM 438 >gi|108561547|ref|YP_626695.1| NADH dehydrogenase subunit 4 [Onychodactylus fischeri] gi|51891134|gb|AAU12951.1| NADH dehydrogenase subunit 4 [Onychodactylus fischeri] gi|84371669|gb|ABC56108.1| NADH dehydrogenase subunit 4 [Onychodactylus fischeri] Length = 459 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 204/360 (56%), Gaps = 8/360 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L +D S L++LT +L P IL+S ++ N R YM ++L+ +I AF + Sbjct: 53 NKYLSLDKFSSPLLILTCWLLPLMILASQNHLKTNPLNRQRTYMSMLIILQVSLILAFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++M+LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 113 MEMILFYIAFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQNSLG 172 Query: 191 TSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + S+I +L P +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 173 SISLILMELTGPMILPLYSHKILWVACLLAFMVKMPLYGMHLWLPKAHVEAPIAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R L L PL+ P I L+L II L+ M QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGILRISLMLTPLSKNMLYPFII-LALWGIIMTGLICMRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GA+ M SHGL+SSALF Y+R H+R + G Sbjct: 292 SHMGLVIAAALIQTPWSFSGAIILMTSHGLISSALFCLANTNYERTHSRTLLLTRGTQAI 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P ++ ++NM LP + GE +++S+F SN ++ G +++A Y+L+++ Sbjct: 352 LPLMTTWWLLINLSNMALPPSLNLWGELTIMLSLFNWSNWTILITGMGTLITATYTLYMF 411 >gi|322422699|ref|YP_004222412.1| NADH dehydrogenase subunit 4 [Mauremys megalocephala] gi|296040857|gb|ADG85400.1| NADH dehydrogenase subunit 4 [Mauremys megalocephala] Length = 458 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 207/373 (55%), Gaps = 11/373 (2%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVI 126 + F +Y+LGVD IS ++L+ +LTP I++ ++ R ++ ++L+ +I Sbjct: 48 LTIFSNYYLGVDQISAPFLILSCWLTPMMIMAGQNNMTMEPTPRKRTFIFITILLQISLI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AF + ++++F+I FE++L+P VII WGG ER+ A F YT GS+ +L A++ Sbjct: 108 LAFSTTELIMFFIAFESTLLPTLVIITRWGGQMERLNAGTYFLFYTLIGSLPLLVALLTT 167 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 T SI L +S +P + W W+A F +F IK+P++ H WLP AHV+AP Sbjct: 168 QTFSGTLSICTL-QLSTYPSMMNPWTHTMWWLALFTAFMIKMPLYGLHLWLPKAHVEAPI 226 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA ++LK+GGYG IR + L P P + L+L +I + + QTD+K Sbjct: 227 AGSMILAAVLLKLGGYGIIRMTMTLAPPLKMLSYPFMM-LALWGVIMTGFICLRQTDLKS 285 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+ HMG V + + GA+ M++HGL SS LF Y+R ++R + Sbjct: 286 LIAYSSVGHMGLVIAAALTRTEWACTGAITLMIAHGLTSSMLFCLANTNYERTNSRTLLL 345 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 + +P + ++ NM LP T +GE +I+S+F SNT ++ G +L+A Sbjct: 346 ARNMQLLLPLMGLWWFSASLTNMALPPTINLMGELTIIVSLFNWSNTTILMTGLGTLLTA 405 Query: 422 LYSLWLYRKVVFG 434 Y+L++ +G Sbjct: 406 AYTLYMLITTQWG 418 >gi|538495|gb|AAA67414.1| presumptive protein 4 [Sceloporus grammicus] Length = 461 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 199/361 (55%), Gaps = 12/361 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + +L +D IS L+ L+ +L P +L+S ++ R +++ +L++++I F Sbjct: 52 FSTPYLMIDPISAPLLTLSCWLLPLMVLASQNHLKSEPLHRKRIFLMTLSILQTLLILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVW-GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++ LFYI FEA+L+P +II W +ER+ A F YT S+ +L AI+ + Sbjct: 112 AASNLTLFYIMFEATLVPTLIIITRWENQAERLTAGTYFLFYTLASSLPLLIAILYFNTK 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 SS + L P W MW A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 NSHSSTMLLQLTQ--PHLTNTWSNIFMWAACLMAFMVKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L P+ + + P + L+L I+ S + M QTD+K LIA Sbjct: 230 MVLAAILLKLGGYGIMRITMSLTPMTPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GAM M++HGL SS LF Y+R HTR + G Sbjct: 289 YSSVSHMGLVIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMITARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P + ++ + NM LP + +GE L+I+S+F SN +L G +++A+YS Sbjct: 349 FQIILPLMSTWWLLANLTNMALPPSINLMGELLIIVSLFNWSNPTILLTGLGTLITAMYS 408 Query: 425 L 425 L Sbjct: 409 L 409 >gi|84579695|dbj|BAE72273.1| NADH dehydrogenase subunit 4 [Oryzias latipes] Length = 460 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/384 (35%), Positives = 212/384 (55%), Gaps = 15/384 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + E R Y+ + L+ +I AF + +M Sbjct: 57 IATDPLSTPLLVLTCWLLPLMILASQNHMAEEPINRQRTYISLLISLQIFLILAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLL--QNSTGS 174 Query: 194 IIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + L P + ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSFLTTQLFPPLQLHTEASKFW-WAGCMLAFLVKMPLYGAHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A +FT+AN+ LP +GE ++I S+F SN +L G +++A YSL ++ Sbjct: 353 LPLLATWWFMFTLANLALPPLPNLMGELMIITSLFNWSNWTLLLTGAGTLITASYSLHMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRER 452 G + + ++ RE Sbjct: 413 LTTQRGPTT-SPILAIEPTHTREH 435 >gi|213136161|gb|ACJ43709.1| NADH dehydrogenase subunit 4 [Neurergus strauchii] Length = 459 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/411 (33%), Positives = 229/411 (55%), Gaps = 9/411 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 + ++ VD +S L+VLT +L P ++S ++ N R Y+I +L++ +I AF Sbjct: 51 LTNTYMSVDPLSSPLLVLTCWLLPLMTIASQNHLKNNPMSRQRTYLIMLALLQTSLIIAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 111 SSTELIMFYISFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNS 170 Query: 189 KKTSS--IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S +I++ + + +W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 IGTLSMTLINMMQPAMMYSYVDKILWSACLLAFMVKMPLYGAHLWLPKAHVEAPVAGSMI 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR + L PL + P + L+L ++ SL+ M QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGIIRITVILTPLTKEMSYPFVV-LALWGVVMTSLICMRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V I + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 290 SVSHMGLVIAAIMIQTPWSLTGAIILMVSHGLISSALFCLANLNYERTHSRTLLLVRGAQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP A + + ++NM LP ++ GE +++S+F S ++ G++++A Y+L+ Sbjct: 350 ATMPLMATLWLFTNLSNMALPPSTNLWGELTIMVSLFNWSPWTILITGTGILVTASYTLY 409 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 ++ G + + + RE +++ + + + P I TFS Sbjct: 410 MFLMTQRG-PIPQHLNPINPSHTREHFLIFMHLIPMLLLILKPSLISGTFS 459 >gi|30065700|ref|NP_839820.1| NADH dehydrogenase subunit 4 [Amia calva] gi|13537038|dbj|BAB40751.1| NADH dehydrogenase subunits 4 [Amia calva] Length = 460 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 208/375 (55%), Gaps = 16/375 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + H+ D +S L++LT +L P +L+S + R Y+ + L+ +I AF + Sbjct: 54 NLHMATDPLSTPLLILTCWLLPLMLLASQNHLHLEPLNRQRTYITLLVSLQVFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 114 TEIILFYIMFEATLIPTLVIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLTL---QK 170 Query: 191 TSSIIDLYAMSKFP-FSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + + M P S+ + W W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 DIGTLSMLIMQHAPTLSLTSSGSKIW-WAACLVAFLVKMPLYGAHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R ++ L PL Q P I L+L II A + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGMMRIMVMLSPLTEQLAYPFII-LALWGIIMAGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVAAGILIQTPWGFTGAIVLMIAHGLVSSALFCLANTNYERTHSRTLLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A + +AN+ LP +GE ++I S+F S VL G +++A YS Sbjct: 349 LQILLPLMASWWFIANLANLALPPLPNLMGELIIITSMFNWSPWTIVLTGLGTLITASYS 408 Query: 425 LWLYRKVVFGVSKCE 439 L+++ G + Sbjct: 409 LYMFLMTQRGPTPTH 423 >gi|67005617|gb|AAY62416.1| NADH dehydrogenase subunit 4 [Testudo graeca] Length = 459 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 205/371 (55%), Gaps = 14/371 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAF 129 F +++LGVD IS L++L+ +LTP IL+S + R +M + L+ +I AF Sbjct: 51 FSNHYLGVDQISTPLLILSCWLTPLMILASQNHLISEPTSRKRTFMTTIIFLQISLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE +LIP VII WG ER+ A F YT GS+ +L A+ M + Sbjct: 111 STTELIMFFIAFETTLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSYMQTQ 170 Query: 189 KKTSSIIDLYAMS-KFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T + +Y M P W W A +F IK+P++ H WLP AHV+AP AG Sbjct: 171 NGT---LFIYMMQLNQPTMTTSWAHSMWWFALLIAFMIKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG IR ++ L PL+ P + ++L +I S + + QTD+K LI Sbjct: 228 SMILAAVLLKLGGYGIIRIMMTLNPLSKTLSYPFMA-MALWGVIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 287 AYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGLTSSMLFCLANTNYERTHSRMLLLTQ 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 + +P + ++ ++ NM LP T +GE +I S+F SN ++ G +++A Y Sbjct: 347 NMQLLLPLMGLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATY 406 Query: 424 SLWLYRKVVFG 434 +L++ +G Sbjct: 407 TLYMLIMTQWG 417 >gi|62184364|ref|YP_220715.1| NADH dehydrogenase subunit 4 [Balaenoptera bonaerensis] gi|62086576|dbj|BAD91677.1| NADH dehydrogenase subunit 4 [Balaenoptera bonaerensis] Length = 459 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 131/356 (36%), Positives = 207/356 (58%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKS-IQE---NFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S I+E + Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLILTMWLLPLMLMASQSHLIKEPPVRKKLYITMLITLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+V + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL---QNTTGTLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWVQPLSTSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MS+F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSIFSWSNPTILLMGTNIVITALYSLYM 410 >gi|332886912|dbj|BAK23026.1| NADH dehydrogenase subunit 4 [Tanichthys albonubes] Length = 460 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 215/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPITRQRLYLVLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLIIQYAQPMTLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L+ II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALLGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFSWSPWTIGLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L+ RE ++ Sbjct: 413 LMSQRGQTPTHII-KLQPFHTREHLLM 438 >gi|213136175|gb|ACJ43722.1| NADH dehydrogenase subunit 4 [Notophthalmus meridionalis] Length = 459 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/394 (34%), Positives = 221/394 (56%), Gaps = 19/394 (4%) Query: 50 FVWSVFDKGRSSFQMIEYYHWIDY------FCSYHLGVDGISILLVVLTTFLTPFCILSS 103 ++W+ F S M+ W++ + ++ +D IS L+VLT +L P L+S Sbjct: 22 WLWTHFTTSSSIIAMLSLT-WLNIPFEFSIMTNTYMTIDPISSPLLVLTCWLLPLMALAS 80 Query: 104 WKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-S 158 ++ N R Y++ +L++ +I AF S ++++FYI FEA+LIP +II WG + Sbjct: 81 QNHLKTNPTSRQRMYLVMLTLLQTSLITAFSSTELVMFYIAFEATLIPTLIIITRWGNQT 140 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIA 214 ER+ A F YT GS+ +L A++V+ + S+ + M P +Q +W+A Sbjct: 141 ERLNAGTYFLFYTLAGSLPLLVALLVLQASLGSLSLTLINVME--PMMMQNHTNKILWLA 198 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG IR L P+ + Sbjct: 199 CLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITTILAPMTKEMS 258 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P I L+L ++ SL+ M QTD+K LIAYSS++HMG V + GA+ M+ Sbjct: 259 YPFII-LALWGVVMTSLICMRQTDLKSLIAYSSVSHMGLVIAATMVQTPWSLTGAIILMI 317 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGL+SSALF + Y+R HTR + G +P A ++ ++NM LP + G Sbjct: 318 SHGLISSALFCLANLNYERTHTRTLLLVRGAQTILPLMATWWLLTNLSNMALPPSMNLWG 377 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 E ++++S+F S ++ G +++A Y+L++Y Sbjct: 378 ELMIMVSMFNWSPWTILMTGAGTLITASYTLYMY 411 >gi|221143480|ref|YP_002519494.1| NADH dehydrogenase subunit 4 [Scarus forsteni] gi|220961582|gb|ACL93253.1| NADH dehydrogenase subunit 4 [Scarus forsteni] Length = 459 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 131/357 (36%), Positives = 202/357 (56%), Gaps = 8/357 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 +G D +S L+VL+ +L P IL+S + R Y+ + L++++I AF + ++ Sbjct: 57 MGTDPLSGPLLVLSCWLLPLMILASQNHLALEPISRQRTYISLMITLQALLILAFGATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++VM + S Sbjct: 117 IMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLVMHNTTGSLS 176 Query: 194 IIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + L F + W A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 177 ALTLQFTPTFTSTSYANKACWAACLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L L PL + P I L+L II + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGIMRVLTILEPLTKEMSYPFII-LALWGIIMTGSICLRQTDLKALIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V GI S G+ GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 296 GLVVAGILSQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMALPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP + E +VI ++F S +L G +++A YSL+++ Sbjct: 356 MATSWFIASLANLALPPLPNLMAELMVICTMFDWSPWTLILTGAGTLITAGYSLYMF 412 >gi|25057341|ref|NP_739798.1| NADH dehydrogenase subunit 4 [Melanotaenia lacustris] gi|25005715|dbj|BAC23368.1| NADH dehydrogenase subunit 4 [Melanotaenia lacustris] Length = 460 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAF 129 F S ++ D +S L+VLT +L P IL+S + Q R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLVLTCWLLPLMILASQNHMSAEPQNRQRTYISLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEMIMFYLMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L M F ++ + W W + +F +K P++ H WLP AHV+AP AGS+ Sbjct: 172 AGTLSLLTLQYKPPMQLFTYADKLW-WASCLLAFLVKTPLYGIHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG IR + L PL+ + P + F +L +I + + Q D+K LIAY Sbjct: 231 ILAAVLLKLGGYGMIRIMSLLEPLSKELCYPFLIF-ALWGVIMTASTCLRQPDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG VT GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVTAGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+GLP +GE ++I ++F S + G +++A YSL Sbjct: 350 QTAIPLMTTWWFIASLANLGLPPLPNLMGELMIITALFSWSKWTLLFTGAGTLITASYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|213136329|gb|ACJ43865.1| NADH dehydrogenase subunit 4 [Taricha granulosa] Length = 459 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/394 (35%), Positives = 222/394 (56%), Gaps = 19/394 (4%) Query: 50 FVWSVFDKGRSSFQMIEYYHWID------YFCSYHLGVDGISILLVVLTTFLTPFCILSS 103 ++W+ F S M+ W++ + ++ VD IS L+VLT +L P L+S Sbjct: 22 WLWTHFSMNSSVIAMLSLM-WLNIPSEFSTMTNTYMTVDPISSPLLVLTCWLLPLMALAS 80 Query: 104 WKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-S 158 ++ N R Y++ +L+ +I AF S ++++FYI FEA+LIP +II WG + Sbjct: 81 QNHLKTNPPSRQRTYLVMLALLQVFLIMAFSSTELIMFYIAFEATLIPTLIIITRWGNQA 140 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYW---MWIA 214 ER+ A F YT GS+ +L A++ + + S+ + L +++ + Y MW+A Sbjct: 141 ERLNAGTYFLFYTLAGSLPLLVALLTL--QASVGSLSMTLINVTEPAMMLNYTNKAMWLA 198 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG IR + L PL + Sbjct: 199 CLLAFMVKMPLYGTHLWLPKAHVEAPVAGSMILAAVLLKLGGYGIIRITIILTPLTKEMS 258 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P I L+L +I SL+ M QTD+K LIAYSS++HMG V I + GA+ M+ Sbjct: 259 YPFII-LALWGVIMTSLICMRQTDLKSLIAYSSVSHMGLVIASIMIQTPWSLTGAIILMI 317 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGL+SSALF + Y+R H+R + G +P A ++ ++NM LP + G Sbjct: 318 SHGLISSALFCLANLNYERTHSRTLLLLRGAQTILPLMATWWLMANLSNMALPPSINLWG 377 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 E +++S+F S ++ G +++A Y+L++Y Sbjct: 378 ELAIMVSLFNWSPWTLLITGTGTLITASYTLYMY 411 >gi|310788904|gb|ADP24455.1| NADH dehydrogenase subunit 4 [Mystacoleucus marginatus] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 STYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRSYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVLQYSQPLQLNSWGHMAWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 VIFPLTAAWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTP-NHITGLQPFHTREHLLM 438 >gi|38018042|ref|NP_937930.1| NADH dehydrogenase subunit 4 [Hiodon alosoides] gi|25006516|dbj|BAC24006.1| NADH dehydrogenase subunit 4 [Hiodon alosoides] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 216/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHVSPEPVNRQRTYITLLVSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKDVG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+I + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMITI--QYSQPLNLSSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLNPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R+H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERIHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTIILTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTPTHII-ALEPSHTREHLLM 438 >gi|325126700|ref|YP_004285849.1| NADH dehydrogenase subunit 4 [Labeo bata] gi|325053252|dbj|BAJ83454.1| NADH dehydrogenase subunit 4 [Labeo bata] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVLQYSQPLQLNSWGHMVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|8395621|ref|NP_059340.1|ND4_15414 NADH dehydrogenase subunit 4 [Danio rerio] gi|21362746|sp|Q9MIY1|NU4M_DANRE RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|8272695|gb|AAF74306.1| NADH dehydrogenase subunit 4 [Danio rerio] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 56 YMAADPLSTPLLVLTCWLLPLMILASQNHINSEPVNRQRMYITLLASLQTFMIMAFGATK 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSDPLLLNSWGHKIWWAGCLIAFLVKMPLYGMHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ Q P I L+L +I LV + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKQLAYPFII-LALWGVIMTGLVCLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 GHMGLVAGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTSYERTHSRTMILARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P V + +AN+ LP +GE ++I ++F S ++ G +++A YSL+++ Sbjct: 353 LPLATVWWFIANLANLALPPLPNLMGELMIITALFNWSPWTIIITGMGTLITANYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G S E + L RE ++ Sbjct: 413 LTSQRG-SIPEHITNLSPSHTREHLLM 438 >gi|111924887|dbj|BAF02827.1| NADH dehydrogenase subunit 4 [Biwia zezera] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 139/389 (35%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +LG D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLGTDPLSTPLLVLTCWLLPLMILASQNHINPEPLNRQRLYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYAQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV V +AN+ LP +GE ++I ++F S VL G +++A YSL+ Sbjct: 351 LIFPLTAVWWFVANLANLALPPLPNLMGELMIITTLFNWSPWTIVLTGAGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L+ RE ++ Sbjct: 411 MFLMSQRGPTPSH-IMKLQPFHTREHLLM 438 >gi|13940441|emb|CAC37999.1| NADH subunit 4 [Nycticebus coucang] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/385 (34%), Positives = 214/385 (55%), Gaps = 16/385 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P IL+S +++ + Y++ + L+++++ F + +++LF Sbjct: 58 DTLSTPLLILTTWLLPLMILASQHHLRKEPLVRKKLYILMLITLQTLLVMTFTASELILF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS---- 192 YI FEA+LIP VII WG +ER+ A F YT GS+ +L +++ + + + Sbjct: 118 YILFEATLIPTLVIITRWGNQTERLNAGLYFLFYTLLGSLPLL---IILLYTQNLAGSLN 174 Query: 193 -SIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 SI+ LY + P WIA +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 LSILPLYHQNMLTPSWSSDLAWIACMMAFMVKMPLYGTHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L PL + P I LSL ++ S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRITTILTPLTNMMAYPFIT-LSLWGMVMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + I + GA M++HGL SS +F Y+R+H+R + GL +P Sbjct: 294 MALVIVAILTQTPWSFMGATALMIAHGLTSSMMFCLANSNYERIHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A+ + ++ N+ LP + +GE L+I++ F S +L V+++ALYSL+++ Sbjct: 354 LMALWWLTASLTNLALPPSINLVGELLIIITAFTWSKLTILLTGLNVLITALYSLYMFTM 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G S +K RE ++ Sbjct: 414 TQHGKSTFH-THNIKPSFTRENTLM 437 >gi|310788908|gb|ADP24457.1| NADH dehydrogenase subunit 4 [Hypsibarbus malcolmi] Length = 442 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 38 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYITLLASLQTFLIMAFGATE 97 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 98 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 155 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 156 TLSMLVLQYSQPLQLNSWGHMVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 215 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 216 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 274 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 275 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 334 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 335 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 394 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 395 LMSQRGPTP-NHITGLQPFHTREHLLM 420 >gi|296905325|gb|ADH84023.1| NADH dehydrogenase subunit 4 [Chromobotia macracanthus] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHINSEPINRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGEIMIITTLFNWSPWTIILTGMGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + ++ L RE ++ Sbjct: 413 LMTQRGPTP-NHIKGLPPFHTREHLLM 438 >gi|14018001|ref|NP_114356.2| NADH dehydrogenase subunit 4 [Nycticebus coucang] Length = 461 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/385 (34%), Positives = 214/385 (55%), Gaps = 16/385 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P IL+S +++ + Y++ + L+++++ F + +++LF Sbjct: 58 DTLSTPLLILTTWLLPLMILASQHHLRKEPLVRKKLYILMLITLQTLLVMTFTASELILF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS---- 192 YI FEA+LIP VII WG +ER+ A F YT GS+ +L +++ + + + Sbjct: 118 YILFEATLIPTLVIITRWGNQTERLNAGLYFLFYTLLGSLPLL---IILLYTQNLAGSLN 174 Query: 193 -SIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 SI+ LY + P WIA +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 LSILPLYHQNMLTPSWSSDLAWIACMMAFMVKMPLYGTHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L PL + P I LSL ++ S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRITTILTPLTNMMAYPFIT-LSLWGMVMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + I + GA M++HGL SS +F Y+R+H+R + GL +P Sbjct: 294 MALVIVAILTQTPWSFMGATALMIAHGLTSSMMFCLANSNYERIHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A+ + ++ N+ LP + +GE L+I++ F S +L V+++ALYSL+++ Sbjct: 354 LMALWWLTASLTNLALPPSINLVGELLIIITAFTWSKLTILLTGLNVLITALYSLYMFTM 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G S +K RE ++ Sbjct: 414 TQHGKSTFH-THNIKPSFTRENTLM 437 >gi|29570679|ref|NP_818900.1| NADH dehydrogenase subunit 4 [Chalceus macrolepidotus] gi|29501118|dbj|BAC67477.1| NADH dehydrogenase subunit 4 [Chalceus macrolepidotus] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 139/389 (35%), Positives = 211/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++G D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYMGTDPLSTPLLVLTCWLLPLMILASQNHINPEPLSRQRMYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPIALHSWGNKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R ++ L PL P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGMMRMMVILDPLTKDMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAAGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE L+I ++F S L G +++A YSL Sbjct: 351 MIFPLAATWWFIANLANLALPPLPNLMGELLIITAMFNWSPWTLALTGAGTLITAAYSLH 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L+ RE ++ Sbjct: 411 LFLTSQRGPAPAH-IMGLQPFHTREHLLM 438 >gi|260766661|gb|ACX50372.1| NADH dehydrogenase subunit 4 [Moxostoma mascotae] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRLYISLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLALESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFTANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLPPFHTREHLLM 438 >gi|260766649|gb|ACX50364.1| NADH dehydrogenase subunit 4 [Moxostoma erythrurum] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I +F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITMLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|110082680|ref|YP_665508.1| NADH dehydrogenase subunit 4 [Liobagrus obesus] gi|83595819|gb|ABC25198.1| NADH dehydrogenase subunit 4 [Liobagrus obesus] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 134/385 (34%), Positives = 218/385 (56%), Gaps = 11/385 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S I+ R Y+ L++ +I AF Sbjct: 54 SPYLATDPLSTPLLVLTCWLLPLMILASQNHIKTEPTSRQRSYIALLASLQTFLIMAFGP 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FE +L+P +II WG +ER++A F YT GS+ +L A++++ Sbjct: 114 SELIMFYVMFEPTLLPTLIIITRWGNQTERLHAGTYFLFYTLVGSLPLLVALLLLYQNTG 173 Query: 191 TSSIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + + ++ P++ + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLIIQYSHPLNLTPWNNKIW-WAACLVAFLVKMPLYGIHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL ++ P+I L+L +I + + +TD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMLRMMGMLDPLPTELTYPIIA-LALWGVIMTGTICLRRTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGLTGALVLMIAHGLVSSALFCLANTTYERTHSRTMILVRGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A+ + +AN+ LP +GE ++I ++F S +L G +++A YSL+L Sbjct: 352 IFPLAAIWWFISNLANLALPPLPNLMGELMIITTMFNWSPWTLLLTGAGTLITAAYSLYL 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRER 452 + G + + L+ RE Sbjct: 412 FLMTQRG-PLPQHIINLQPYHTREH 435 >gi|108767376|ref|YP_636157.1| NADH dehydrogenase subunit 4 [Minytrema melanops] gi|105873691|gb|ABF74913.1| NADH dehydrogenase subunit 4 [Minytrema melanops] gi|119225383|dbj|BAF41736.1| NADH dehydrogenase subunit 4 [Minytrema melanops] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 216/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++Q W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLIIQYSQPLTLQSWGHNFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFVANLANLALPPLPNLMGEMMIITTLFGWSPWTIALTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPAP-NHITGLPPFHTREHLLM 438 >gi|119360759|ref|YP_913740.1| NADH dehydrogenase subunit 4 [Schistura balteata] gi|119225467|dbj|BAF41814.1| NADH dehydrogenase subunit 4 [Schistura balteata] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 206/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPTSRQRLYIALLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLNTWGHNIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLNPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTTYERTHSRTMMLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S VL G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIVLTGIGTLITAGYSLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|109689689|ref|YP_659573.1| NADH dehydrogenase subunit 4 [Ventrifossa garmani] gi|109452373|dbj|BAE96406.1| NADH dehydrogenase subunit 4 [Ventrifossa garmani] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 205/359 (57%), Gaps = 12/359 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 +Y++ D +S L+VL+ +L P IL+S + R ++ + L++ +I AF + Sbjct: 54 NYYIATDPLSAPLLVLSCWLLPLMILASQSHLSPEPLIRQRAFITLLVTLQAFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 + ++FY+ FEA+LIP ++I WG ER+ A F LYT GS+ +L A++ + + Sbjct: 114 TEFIMFYVMFEATLIPTLLVITRWGNQMERLNAGIYFLLYTLAGSLPLLIALMFLHGAME 173 Query: 191 TSSIIDLYAMSK----FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ + SK P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSLL-IIQYSKPLIIMPLEGKIW-WTACMLAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR ++ L PL+ + P I L+L ++ S + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMIRLMVILGPLSKEVMYPFII-LALWGVVMTSTTCLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGALMLMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + T+AN+ LP +GE ++ S+F+ S +L G +++A+YSL Sbjct: 351 VALPLMTSWWFITTLANLALPPLPNLMGELSIMTSLFKWSPWTLILTGAGTLITAMYSL 409 >gi|538475|gb|AAA67398.1| presumptive protein 4 [Sceloporus grammicus] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 201/365 (55%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + L VD IS L+VL+ +L P L+S ++ R +++ +L++ +I F Sbjct: 52 FSTPQLMVDPISAPLLVLSCWLLPLMALASQNHLKSEPLHRKRVFLMTISILQTFLILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 ++++ L YI FEA+LIP +II WG ER+ A F YT S+ +L AI +C+ Sbjct: 112 SAINLNLLYIMFEATLIPTLIIITRWGNQQERLTAGTYFLFYTLASSLPLLIAI--LCFN 169 Query: 189 KKTS-SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 K S I L +++ P W MW A +F +K+P++ H WLP AHV+AP AG Sbjct: 170 TKNHHSSITLLQLTQ-PQLTNSWSNVFMWAACLLAFMVKMPLYGLHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA I+LK+GGYG +R + L PL + + P + L+L I+ S + M QTD+K LI Sbjct: 229 SMVLAAILLKLGGYGIMRITMLLTPLTPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GAM M++HGL SS LF Y+R HTR + Sbjct: 288 AYSSVSHMGLVIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G P + ++ + NM LP + +GE L+I+S+F SN +L G +++A Y Sbjct: 348 GFQIIFPLMSTWWLMANLTNMALPPSINLMGELLIIVSLFNWSNATILLTGLGTLITAAY 407 Query: 424 SLWLY 428 SL ++ Sbjct: 408 SLHMF 412 >gi|119360395|ref|YP_913259.1| NADH dehydrogenase subunit 4 [Rhodeus ocellatus kurumeus] gi|119224935|dbj|BAF41320.1| NADH dehydrogenase subunit 4 [Rhodeus ocellatus kurumeus] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 217/388 (55%), Gaps = 15/388 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 HL D +S L++LT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 HLATDPLSTPLLILTCWLLPLMILASQNHINSEPMNRQRLYISLLASLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++T+ Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL---QQTT 172 Query: 193 SIIDLYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + ++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 GTLSMFIIQYSQPLTLNSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLDPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P AV ++ +AN+ LP +GE ++I ++F S L G++++A YSL+L Sbjct: 352 IFPLTAVWWLIANLANLALPPLPNLMGELMIISTLFNWSPMTISLTGLGMLITAAYSLYL 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + +L RE ++ Sbjct: 412 FLMSQRGPTP-NHIIKLAPFHTREHLLM 438 >gi|310788864|gb|ADP24435.1| NADH dehydrogenase subunit 4 [Poropuntius opisthoptera] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVNRQRSYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFSWSPWTILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|49616784|ref|YP_044761.1| NADH dehydrogenase subunit 4 [Rena humilis] gi|49256940|dbj|BAD24746.1| NADH dehydrogenase subunit 4 [Rena humilis] Length = 451 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/367 (34%), Positives = 203/367 (55%), Gaps = 8/367 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 +L VD IS L+ L+ +L P +L+S KS+ + N R ++ L++ + F + + Sbjct: 55 NLNVDFISSPLIALSYWLVPLSLLASQKSMALEPETNQRTFITTTFTLQTFISLTFSTSN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++ F+I FEA+LIP +II WG ER+ A F LYT S+ +L AI+ + T+ Sbjct: 115 LMAFFIMFEATLIPTLIIITRWGQQQERLTAGTYFMLYTIMTSMPLLIAILHITHTASTA 174 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +++ + + P S+ +W+A +F K+PM+ H WLP AHV+AP AGS+ LA I+L Sbjct: 175 TLLLPMKLIQPPASLM--LWLACLAAFLTKLPMYGVHLWLPKAHVEAPIAGSMILAAILL 232 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG IR L P+ + P I LS+ ++ ASL + QTD+K LIAYSSI HMG Sbjct: 233 KLGGYGMIRMAQTLPPMETNSTTP-ILALSIWGMMMASLTCLQQTDLKSLIAYSSIGHMG 291 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I + + + GA M++HG SSALF + Y+R HTR + GL +P Sbjct: 292 LVIGAILTQSPTSMTGATTLMIAHGFSSSALFCLANINYERTHTRTMTLTQGLQSILPLT 351 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + ++ N+ +P T F GE L+I +++ + + + +++A Y+L +Y Sbjct: 352 TTWWLATSLMNIAMPPTINFTGELLIISALYNWAPPMIIPLGLSTMITATYTLHMYLSTQ 411 Query: 433 FGVSKCE 439 G + Sbjct: 412 AGKPQTN 418 >gi|213136245|gb|ACJ43787.1| NADH dehydrogenase subunit 4 [Paramesotriton deloustali] Length = 458 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/394 (34%), Positives = 219/394 (55%), Gaps = 19/394 (4%) Query: 50 FVWSVFDKGRSSFQMIEYYHWIDY------FCSYHLGVDGISILLVVLTTFLTPFCILSS 103 ++W+ F S M+ W++ F + + VD S L+VLT +L P L+S Sbjct: 22 WLWTYFVVNSSIIAMMSLM-WLNLPFEFSSFTNMLMSVDTTSSPLLVLTCWLLPLMTLAS 80 Query: 104 WKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS- 158 + ++ N R Y+I +L++ +I AF S ++++FYI FE +LIP +II WG Sbjct: 81 QQHLKMNPLSRQRAYLIMLTLLQASLIIAFSSTELIMFYIAFETTLIPTLIIITRWGNQV 140 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIA 214 ER+ A F YT GS+ +L A++V+ + SI Y M P +Q + +W+A Sbjct: 141 ERLNAGTYFLFYTLAGSLPLLIALLVLQTPPGSLSIALFYIME--PMVLQSYANKILWLA 198 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG IR L P+ + Sbjct: 199 CLLAFMVKMPLYGAHLWLPKAHVEAPVAGSMILAAVLLKLGGYGIIRITTILTPMTKEMS 258 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P L+L ++ SL+ M QTD+K LIAYSS++HMG V + + GA+ M+ Sbjct: 259 YP-FMILALWGVVMTSLICMRQTDLKSLIAYSSVSHMGLVIAAVMIQTPWSITGAVILMI 317 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGL+SSALF + Y+R H+R + G +P A ++ ++NM LP + G Sbjct: 318 SHGLISSALFCLANMNYERTHSRTLLLVRGAQATLPLMATWWLITNLSNMALPPSMNLWG 377 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 E +++S+F S ++ G +++A Y+L++Y Sbjct: 378 ELTIMVSLFNWSPWTILITGAGTLITASYTLYMY 411 >gi|169666021|gb|ACA63668.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus qiubeinsis] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRSYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAMWWFTANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|145592970|ref|YP_001157267.1| proton-translocating NADH-quinone oxidoreductase, chain M [Salinispora tropica CNB-440] gi|145302307|gb|ABP52889.1| proton-translocating NADH-quinone oxidoreductase, chain M [Salinispora tropica CNB-440] Length = 503 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 157/434 (36%), Positives = 248/434 (57%), Gaps = 12/434 (2%) Query: 65 IEYYHWIDY------FCSYHLGVDGISILLVVLTTFLTPFCI-LSSWK-SIQENFREYMI 116 + +H +D +HLGVDGIS LVVLT LT C + WK + R + Sbjct: 68 VRPWHQVDLPWVPGLDLRFHLGVDGISWPLVVLTALLTLLCCGYTLWKVPSGGSGRALVA 127 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176 LV+E ++G FL+LD++LF++FFE L+PM+ II WGG +R AA KF LYT GS+ Sbjct: 128 LLLVVEVGILGTFLALDLVLFFVFFEVVLLPMYAIIVGWGGPDRYRAARKFALYTLLGSV 187 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 +L ++V+ T+ I+ L + Q + +FA+K P++P H+WLP+AH Sbjct: 188 LLLVGVMVVVTAAGTADIVALTGGTGLSRGPQLAAFTLLALAFAVKSPLWPLHSWLPDAH 247 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 QAPT GSV LAG++LKMG YG IR + + P +++ APV+ L++ AI+ SLV + Q Sbjct: 248 TQAPTVGSVILAGVLLKMGTYGLIRVAVGVAPEGAEWAAPVLGVLAVAAILVGSLVCLAQ 307 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 T++K+LIAYSS+ HMG+V +G+ + +G+ A+ ++HG+++ LFF G + DR HT Sbjct: 308 TELKRLIAYSSVGHMGFVLLGVATLTGTGLRAALIGNIAHGVITGLLFFLAGAVKDRAHT 367 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV----AVL 412 D+ GL PR A ++ +A++GLPG +GF GE +++ + + A L Sbjct: 368 GDLADLSGLRETAPRLAGLLGFAAVASLGLPGLAGFWGEAFAVIAAVRAGGPLWLTLAAL 427 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 A+ G L+A Y L L R+V G + + ++ E P+ +LT+ G+ P+ + Sbjct: 428 AALGGALTAAYLLRLLRQVTHGPASSAVARVGPGVARAELLTWAPLVLLTLAVGLAPILV 487 Query: 473 RDTFSVPLSSIIEN 486 P+ +++ Sbjct: 488 LGVAQAPVDALLTG 501 >gi|29570735|ref|NP_818848.1| NADH dehydrogenase subunit 4 [Lefua echigonia] gi|29501062|dbj|BAC67425.1| NADH dehydrogenase subunit 4 [Lefua echigonia] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L++LT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSAPLLILTCWLLPLMILASQNHINPEPISRQRLYITLLAFLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLML--QQTTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLNSWGHSIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTTYERTHSRTMLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+L+ Sbjct: 353 LPLAAAWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIMLTGVGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMTQRGTTP-NHIMGLPPFHTREHLLM 438 >gi|284507251|dbj|BAI67679.1| NADH dehydrogenase subunit-4 [Crossostoma lacustre] Length = 460 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 SLYLASDPLSTPLLVLTCWLLPLMILASQNHITPEPIIRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQT 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F IK+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLILQHSQPLALTSWGHKIWWAGCLIAFLIKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVVLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPLTIILTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + + L RE ++ Sbjct: 411 LFLMSQRGPTP-KHIVGLPPFHTREHLLM 438 >gi|5835383|ref|NP_008338.1|ND4_12183 NADH dehydrogenase subunit 4 [Latimeria chalumnae] gi|1916827|gb|AAC60327.1| NADH dehydrogenase subunit 4 [Latimeria chalumnae] Length = 460 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 203/365 (55%), Gaps = 10/365 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI---QENFREYMIAFLV-LESMVIGAFLSLDM 134 + D +S L++LT +L P IL+S + N + I+ L+ L++ +I AF + ++ Sbjct: 57 MATDPLSTPLLILTCWLLPLMILASQNHMFMEPLNRQRSFISLLISLQTFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++ T S Sbjct: 117 ILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTVMGSLPLLVALLMTQNNLGTLS 176 Query: 194 ---IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 I +Y M W W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MPLIQHMYQMKLHTHGDMMW-WTACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L P+ P I L+L II + + QTD+K LIAYSS+ H Sbjct: 236 LLKLGGYGMMRLIMMLAPMTKTLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVGH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI + G GA M++HGL SSALF Y+R H+R + G+ +P Sbjct: 295 MGLVAAGILTQTPWGFTGATVLMIAHGLTSSALFCLANTNYERTHSRTMILARGMQVILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 ++ +AN+ LP ++ +GE L+I F SN + G++++A+YSL ++ Sbjct: 355 LMTFWWLMMNLANLALPPSTNLMGELLIITMTFNWSNWTLTMTGLGMLITAIYSLHMFLT 414 Query: 431 VVFGV 435 G+ Sbjct: 415 TQRGL 419 >gi|3122494|sp|O03173|NU4M_LATCH RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 Length = 461 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 203/365 (55%), Gaps = 10/365 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI---QENFREYMIAFLV-LESMVIGAFLSLDM 134 + D +S L++LT +L P IL+S + N + I+ L+ L++ +I AF + ++ Sbjct: 57 MATDPLSTPLLILTCWLLPLMILASQNHMFMEPLNRQRSFISLLISLQTFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++ T S Sbjct: 117 ILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTVMGSLPLLVALLMTQNNLGTLS 176 Query: 194 ---IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 I +Y M W W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MPLIQHMYQMKLHTHGDMMW-WTACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L P+ P I L+L II + + QTD+K LIAYSS+ H Sbjct: 236 LLKLGGYGMMRLIMMLAPMTKTLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVGH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI + G GA M++HGL SSALF Y+R H+R + G+ +P Sbjct: 295 MGLVAAGILTQTPWGFTGATVLMIAHGLTSSALFCLANTNYERTHSRTMILARGMQVILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 ++ +AN+ LP ++ +GE L+I F SN + G++++A+YSL ++ Sbjct: 355 LMTFWWLMMNLANLALPPSTNLMGELLIITMTFNWSNWTLTMTGLGMLITAIYSLHMFLT 414 Query: 431 VVFGV 435 G+ Sbjct: 415 TQRGL 419 >gi|169666025|gb|ACA63670.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus maculatus] Length = 460 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRSYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTSWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFTANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|323435174|ref|YP_004221898.2| NADH dehydrogenase subunit 4 [Hiodon tergisus] Length = 460 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHISTEPTNRQRTYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKDVG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+I + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMITI--QYSQPLNLSSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLNPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R+H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERIHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MVLPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTIILTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTPTHII-ALEPSHTREHLLM 438 >gi|5565829|gb|AAD45218.1| NADH dehydrogenase subunit 4 [Spermophilus citellus] Length = 408 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/359 (37%), Positives = 203/359 (56%), Gaps = 18/359 (5%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L++LT +L P I++S + QE + Y++ + L+S +I F + ++++ Sbjct: 44 TDPLSSPLLILTAWLLPLMIMASQNHLAQEPLIRKKLYILMLISLQSFLIMTFSATELIM 103 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K T S Sbjct: 104 FYILFEATLIPTLIIITRWGNQAERLNAGLYFLFYTLVGSLPLLVALIFI--QKSTGSLN 161 Query: 194 -IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 II +Y P S W MW+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 162 FIISMYQSFNLPMS---WTNDIMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLA 218 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG IR L P+ P I LSL +I S + + QTD+K LIAYSS+ Sbjct: 219 AILLKLGGYGMIRISTFLHPITCNMAYPFI-MLSLWGMIMTSSICLRQTDLKSLIAYSSV 277 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I A M++HGL SS LF Y+R+H+R + GL Sbjct: 278 SHMALVIVAIMIQTPWSFMEATALMIAHGLTSSMLFCLANTNYERIHSRTMTLARGLQSI 337 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ T+ N+ LP + IGE +IM+ F SN +L ++++ALYSL++ Sbjct: 338 LPLMATWWILATLTNLALPPSINLIGELFIIMASFTWSNATIILTGLNMLITALYSLYM 396 >gi|295641214|gb|ADG22754.1| NADH dehydrogenase subunit 4 [Martes pennanti] Length = 459 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 208/389 (53%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L+VLTT+L P +++S + + + Y+ + L+ +I F + ++++ Sbjct: 58 IDSLSAPLLVLTTWLLPLMLVASQHHLSKETLTRKKLYITMLITLQLFLIMTFTASELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALL---WMQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NL-------LVIQYWAQPLLDSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL + Y A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITILLNPL-TNYMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+M+ F SN ++ + L+ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNLTIIMMGINITLTALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G V+ +K RE Sbjct: 407 SLYMLITTQRG-KHTHHVKNIKPSFTREN 434 >gi|254054999|ref|YP_003058239.1| NADH dehydrogenase subunit 4 [Oryzias minutillus] gi|253960459|dbj|BAH84941.1| NADH dehydrogenase subunit 4 [Oryzias minutillus] Length = 459 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/362 (37%), Positives = 206/362 (56%), Gaps = 14/362 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S + D +S L++LT +L P IL+S + R Y+ + L+ +I AF Sbjct: 52 FISTFMATDPLSTPLLILTCWLLPLMILASQNHMSLEPLNRQRTYISLLVSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 GATEMIMFYIMFEATLIPTLIIITRWGNQTERLSAGIYFLFYTLAGSLPLLVALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFPFSIQ-----YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T S+ L A P +IQ W W+ +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NSTGSLSFLTAQFFQPLNIQSSANKIW-WVGCVLAFLVKMPLYGAHLWLPKAHVEAPVAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R ++ L PL SQ P I L+L ++ + + QTD+K LI Sbjct: 229 SMILAAVLLKLGGYGLMRIIIILDPLTSQLSYPFIV-LALWGVVMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R+H+R + Sbjct: 288 AYSSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERIHSRTMILAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A + T+AN+ LP +GE ++I S+F S +L G +++A Y Sbjct: 348 GLQMVLPLMATWWFLSTLANLALPPLPNLMGELMIITSLFNWSYWTLLLTGIGTLITASY 407 Query: 424 SL 425 SL Sbjct: 408 SL 409 >gi|308745758|ref|YP_003934028.1| NADH dehydrogenase subunit 4 [Ambystoma texanum] gi|261888565|gb|ACY06239.1| NADH dehydrogenase subunit 4 [Ambystoma texanum] Length = 458 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 140/386 (36%), Positives = 220/386 (56%), Gaps = 14/386 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 LG+D IS L++LT +L P IL+S K ++E+ R Y+ FLVL+ +I AF S ++ Sbjct: 56 LGLDFISSPLLILTCWLLPLMILASQKHLKESPPTRQRMYISMFLVLQISLIFAFTSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG SER+ A F YT GS+ +L A++ + + T S Sbjct: 116 ILFYIAFETTLIPTLIIITRWGNQSERLNAGTYFLFYTLAGSLPLLIALLAL--QNSTGS 173 Query: 194 I-IDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + + L + P+ Y ++W + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 LSLCLLENMEAPYLFMYTNKFLWFSCLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR L L P + +I L+L +I SL+ M QTD+K LIAYSS++ Sbjct: 234 VLLKLGGYGIIRITLLLTPQKELCYPFMI--LALWGVIMTSLICMRQTDLKSLIAYSSVS 291 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V + GA+ M+SHGL+SSALF + Y+R H+R + G+ + Sbjct: 292 HMGLVVAAAIIQTPWSLTGAVILMISHGLISSALFCLANMNYERSHSRTLLLVRGMQAIL 351 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + + ++NM LP + GE +++S+F S + G +++A Y+L++Y Sbjct: 352 PLMGMWWLFVNLSNMALPPSLNLWGELTIMVSLFNWSKWTILFTGLGTLITATYTLYMYL 411 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + + + RE C++ Sbjct: 412 MTQRGPAPMHLNKMTPNYT-REHCLM 436 >gi|260766631|gb|ACX50352.1| NADH dehydrogenase subunit 4 [Moxostoma austrinum] Length = 460 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRLYISLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLALESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFTANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHITGLPPFHTREHLLM 438 >gi|317176505|dbj|BAJ54320.1| NADH dehydrogenase subunit 4 [Brienomyrus niger] Length = 460 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/390 (34%), Positives = 214/390 (54%), Gaps = 15/390 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 SPYMATDPLSTPLLVLTCWLLPLMILASQNHISPEPTNRQRTYITLLISLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIL---QK 170 Query: 191 TSSIIDLYAMSKF-PFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + + M + P + W W +F +K+P++ H W+P AHV+AP AGS+ Sbjct: 171 DLGTLSMLTMQYYNPTKMTAWGDKIWWAGCLLAFLVKMPLYGVHLWMPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 FLA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAY Sbjct: 231 FLAAVLLKLGGYGMMRMMVMLTPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + +AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QMVLPLMTAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTIILTGLGTLITAAYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + + L+ RE ++ Sbjct: 410 YMFLMTQRGPTPAHTI-TLQPSHTREHLLM 438 >gi|296905346|gb|ADH84037.1| NADH dehydrogenase subunit 4 [Pseudogastromyzon fasciatus] Length = 460 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 142/401 (35%), Positives = 219/401 (54%), Gaps = 17/401 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 SLYLATDPLSTPLLVLTCWLLPLMILASQNHIMPEPIVRQRLYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQT 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLILQHSQPLTLTSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S VL G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGEIMIISALFNWSPLTIVLTGMGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 L+ G + + L RE + + P+ +LT Sbjct: 411 LFLMSQRGPAP-NHIMGLPPFHTREHLLMTLHLVPVLLLTT 450 >gi|91176198|ref|YP_537154.1| NADH dehydrogenase subunit 4 [Balaenoptera edeni] gi|90265644|dbj|BAE91862.1| NADH4 [Balaenoptera edeni] Length = 459 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/356 (35%), Positives = 206/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLTKEPPVRKKLYITMLITLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+V + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALVYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAEPLSTSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MS+F SN +L +V++ALY+L++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSIFSWSNPTILLMGMNIVITALYTLYM 410 >gi|310788862|gb|ADP24434.1| NADH dehydrogenase subunit 4 [Spinibarbus hollandi] Length = 460 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWAHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAMWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAAYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|111378371|ref|YP_717023.1| NADH dehydrogenase subunit 4 [Cranoglanis bouderius] gi|58201957|gb|AAW67013.1| NADH dehydrogenase subunit 4 [Cranoglanis bouderius] Length = 460 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 216/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++G D +S L+VLT +L P IL+S ++ R Y+ L++ +I AF + Sbjct: 54 NLYMGTDPLSTPLLVLTCWLLPLMILASQNHVKMEPINRQRSYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLSAGTYFLFYTLTGSLPLLVALLLLYQDTG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMLTI--QYSHPLALNSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R ++ L PL+ P I L+L +I + + QTD+K L+AYS Sbjct: 232 LAAILLKLGGYGMMRMMVILDPLSKDLLYP-IMALALWGMIMTGSICLRQTDLKSLMAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGALVLMIAHGLVSSALFCLANTTYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+GLP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 IIFPLTAFWWFLSNLANLGLPPLPNLMGELMIITAMFNWSPWTLILTGTGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L+ RE ++ Sbjct: 411 LFLMTQRG-PLPQHIINLQPFHTREHLLM 438 >gi|289183031|ref|YP_003457027.1| NADH dehydrogenase subunit 4 [Haplophryne mollis] gi|288909117|dbj|BAI77348.1| NADH dehydrogenase subunit 4 [Haplophryne mollis] Length = 460 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/385 (35%), Positives = 220/385 (57%), Gaps = 13/385 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDML 135 G D +S L+VLT +L P IL+S + R Y++ + L+ ++ AF + ++L Sbjct: 58 GTDPVSAPLLVLTCWLLPLMILASQNHLASEPWGRQRLYLVLLVTLQFFLVMAFSTTELL 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FEA+L+P V+I WG ++R+ A L+T GS+ +L +++++ ++ S+ Sbjct: 118 MFYIMFEATLMPTLVLITRWGNQTQRLNAGTYLLLFTLVGSLPLLVSLLILRNSTESLSM 177 Query: 195 IDLYAMSKFP----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L S P F+ + W W + +F +K+PM+ H WLP AHV+AP AGS+ LA I Sbjct: 178 LIL-PYSNMPLLSLFTDKLW-WASCLLAFLVKMPMYGVHLWLPKAHVEAPVAGSMVLAAI 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR L+ L PL + P I F +L ++ A + ++QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMLVCLEPLTQELSYPFIIF-ALWGLVMAGSICILQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I G+ GAM M++HGL SSALF Y+R H+R + G+ +P Sbjct: 295 MGLVIGAILIQTPWGLTGAMTLMIAHGLTSSALFCLANTNYERTHSRTMVLMRGMQLILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 355 LGATWWLIASLANLALPPLPNLMGELMILTSLFGWSPWTIILTGAGTLITAAYSLYMFIT 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G++ + L+ RE M+ Sbjct: 415 TQRGLTP-HHILGLEPTHTREHLMM 438 >gi|289183241|ref|YP_003457222.1| NADH dehydrogenase subunit 4 [Cryptopsaras couesii] gi|288909033|dbj|BAI77270.1| NADH dehydrogenase subunit 4 [Cryptopsaras couesii] Length = 460 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 209/372 (56%), Gaps = 14/372 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VL+ +L P +L+S + + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSAPLLVLSCWLLPLMLLASQGHVGVEPVSHQRWYITLLTSLQIFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP V+I WG +ER A F YT GSI +L A+ ++ T Sbjct: 116 LMMFYIMFEATLIPTLVLITRWGNQTERFNAGTYFLFYTLVGSIPLLIALFLLKTSAGTL 175 Query: 193 SIIDLYAMSKFPFSIQY----WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S++ L S P S+ Y W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIL-GNSPLPPSVPYAGKMW-WTASLLAFLVKMPLYSIHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R L+ L P + P + F SL ++ A + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMLVTLEPSTPEMAYPFLIF-SLWGVVMAGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI S G GA+ M++HGL SSALF + Y+R HTR + G Sbjct: 293 SHMGLVIAGILSQTPGGFTGALMLMIAHGLTSSALFCLANMSYERTHTRKMVLNRGTQLL 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ-NSNTVAVLASFGVVLSALYSLWL 427 +P + T+AN+ LP +GE +++ S+F+ N T+A + G+ ++A YSL++ Sbjct: 353 LPLTTAWWFIATLANLALPPFPNLMGELMIMTSLFKWNPWTLAATGT-GMAITAAYSLYM 411 Query: 428 YRKVVFGVSKCE 439 +G + Sbjct: 412 LIMTQWGKPRIR 423 >gi|223976130|ref|YP_002600986.1| NADH dehydrogenase subunit 4 [Giraffa camelopardalis angolensis] gi|223972313|dbj|BAH23350.1| NADH dehydrogenase subunit 4 [Giraffa camelopardalis] Length = 459 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 137/391 (35%), Positives = 209/391 (53%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + I + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVAL---------TYIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LILQYWTQPVSNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL P I LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITTLLNPLTDLMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GAM M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGAMALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE LV+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELLVMMSAFSWSNATIILMGVNMVITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + + RE ++ Sbjct: 408 LYMLITTQRG-KHTHHINNITPSFTRENALM 437 >gi|310788888|gb|ADP24447.1| NADH dehydrogenase subunit 4 [Schizothorax waltoni] Length = 460 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 137/386 (35%), Positives = 213/386 (55%), Gaps = 13/386 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + ++ Sbjct: 57 LATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYIMLLASLQTFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T + Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTGT 174 Query: 194 IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQVIF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 354 PLAAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 414 MSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|119360465|ref|YP_913636.1| NADH dehydrogenase subunit 4 [Chromobotia macracanthus] gi|119225341|dbj|BAF41697.1| NADH dehydrogenase subunit 4 [Chromobotia macracanthus] Length = 460 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAIWWFIANLANLALPPLPNLMGEIMIITTLFNWSPWTIILTGMGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + ++ L RE ++ Sbjct: 413 LMTQRGPTP-NHIKGLPPFHTREHLLM 438 >gi|39981080|gb|AAR33072.1| NADH dehydrogenase subunit 4 [Balaenoptera borealis] Length = 459 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 131/356 (36%), Positives = 207/356 (58%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKS-IQE---NFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S I+E + Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLIKEPPVRKKLYITMLITLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+V + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALVYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAKPLSTSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MSVF SN +L +V++ALY+L++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSVFSWSNPTILLMGTNIVITALYTLYM 410 >gi|317176393|dbj|BAJ54216.1| NADH dehydrogenase subunit 4 [Hiodon tergisus] Length = 461 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHISTEPTNRQRTYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIL--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 VGTLSMITIQYSQPLNLSSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLNPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R+H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERIHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MVLPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTIILTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTPTHII-ALEPSHTREHLLM 438 >gi|190349380|ref|YP_001974692.1| NADH dehydrogenase subunit 4 [Pyxidea mouhotii] gi|108863143|gb|ABG22135.1| NADH dehydrogenase subunit 4 [Pyxidea mouhotii] Length = 458 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 131/388 (33%), Positives = 213/388 (54%), Gaps = 12/388 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI--QENFREYMIAFL--VLESMVIGAF 129 F + +LGVD IS+ ++L+ +LTP I++ ++ + R+ I F+ +L+ +I AF Sbjct: 51 FSNCYLGVDQISVPFLILSCWLTPMMIMAGQNNLITEPTSRKRTIIFITILLQISLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE++L+P VII WGG ER+ A F YT GS+ +L A++ Sbjct: 111 STTELIMFFIAFESTLLPTLVIITRWGGQMERLNAGTYFLFYTLIGSLPLLVALLTTQTY 170 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T SI L +S +P + W W+A F +F IK+P++ H WLP AHV+AP AGS Sbjct: 171 SGTLSICTL-QLSTYPDMMNPWTHTMWWLALFTAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L P P + L+L +I + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGIIRMTMTLAPPLKMLSYPFMM-LALWGVIMTGFICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+ HMG V + + GA+ M++HGL SS LF Y+R ++R + Sbjct: 289 YSSVGHMGLVIAATLTQTEWACTGAITLMIAHGLTSSMLFCLANTNYERTNSRTLLLARN 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ NM LP T +GE +I+S+F SNT ++ G +++A Y+ Sbjct: 349 MQLLLPLMGLWWFSASLTNMALPPTINLMGELTIIISLFNWSNTTILMTGLGTLMAAAYT 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++ +G + + + RE Sbjct: 409 LYMLIITQWGETP-SHTKTIPPTHTREH 435 >gi|310788892|gb|ADP24449.1| NADH dehydrogenase subunit 4 [Cyclocheilichthys janthochir] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRSYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLTLQYSQPMQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|296099720|gb|ADG95318.1| NADH dehydrogenase subunit 4 [Polypterus teugelsi] Length = 459 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 203/359 (56%), Gaps = 7/359 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 SY + D IS L++LT +L P I +S I R Y+ + L+ ++I AF + Sbjct: 54 SYMMATDMISTPLIILTCWLLPLMIFASQNHISSEPINRQRSYITLLVSLQILLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 114 TEIILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLYLYNMTG 173 Query: 191 TSSIIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + SI + P + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSITSMNLTIICPDTWANTFLWVACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR + L P+ P I L+L II + M Q+D+K LIAYSSI+ Sbjct: 234 VLLKLGGYGMIRMTIMLEPMTKSLAYPFII-LALWGIIMTGAICMRQSDMKSLIAYSSIS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG + GI G GA+ M++HGL SSALF + Y+R H+R + G+ M Sbjct: 293 HMGLIASGILIQTPWGFTGAIILMIAHGLTSSALFCLANIAYERTHSRTLLLTRGMQIIM 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ ++ANM LP +GE +++ S+F S +L G +++A YSL+L+ Sbjct: 353 PLMTAWWLIMSLANMALPPLPNLMGELMIMTSMFNWSAWTILLTGTGTLITASYSLYLF 411 >gi|317097338|ref|YP_004123540.1| NADH dehydrogenase subunit 4 [Microphysogobio koreensis] gi|223951294|gb|ACN29586.1| NADH dehydrogenase subunit 4 [Microphysogobio koreensis] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +LG D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLGTDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W + +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYSQPLLLNSWGHKIWWASCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAVILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 LIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + V +L+ RE ++ Sbjct: 411 MFLMSQRGPTPSH-VMKLQPFHTREHLLM 438 >gi|310788900|gb|ADP24453.1| NADH dehydrogenase subunit 4 [Catlocarpio siamensis] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRSYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPMQLNSWGHMVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|239997491|gb|ACS37010.1| NADH dehydrogenase subunit 4 [Boulengerula boulengeri] Length = 456 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 209/388 (53%), Gaps = 9/388 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +D +S L++LT +LTP I++S + N R ++ F+ L+ +I AF Sbjct: 51 FTNKWFAIDQMSSPLIILTCWLTPLMIIASQNHMNNNPYTHQRTFITTFVFLQLSLIMAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S ++++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 111 SSTELIMFYIMFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLMGSLPLLLAMLHLYSS 170 Query: 189 KKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S + I +S W WIA +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 171 ASLSLLNIQFINQINDQYSHIIW-WIACLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMIL 229 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR + L PL + P + LSL I S++ + QTD+K LIAYSS Sbjct: 230 AAVLLKLGGYGIIRISIMLTPLVKELAYPFLI-LSLWGIAMTSMICLRQTDLKSLIAYSS 288 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V G+ GAM M++HGL SS LF Y+R H R + GL Sbjct: 289 VSHMALVISAALIQTPWGLSGAMALMIAHGLSSSMLFCLANTSYERTHNRTLLLTRGLQT 348 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++ ++ NM LP T +GE +I S+F SN + G++L+ALYSL + Sbjct: 349 ILPLMTLWWLLASLTNMALPPTPNLMGELTIISSLFNWSNMTITMTGMGIILTALYSLHM 408 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G K + + RE ++ Sbjct: 409 FLMTQQG-QKQMHITSILPTHTREHLLM 435 >gi|260670820|ref|YP_003227101.1| NADH dehydrogenase subunit 4 [Lagocephalus lunaris] gi|260176598|gb|ACX33663.1| NADH dehydrogenase subunit 4 [Lagocephalus lunaris] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 135/361 (37%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQE--NFREYMIAFLV-LESMVIGAFLS 131 ++H+ D +S L+VL+ +L P IL+S ++QE N + I L L+ +I AF + Sbjct: 54 NHHVATDPLSTPLLVLSCWLLPLMILASQNHTVQEPINRQRTFITLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNTNG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLAYSDPLQLATLTDKLW-WAACILAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L L PL + P I L+L II S + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRILTTLEPLTKELSYPFII-LALWGIIMTSSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVSGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + ++AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 ALPLMAAWWFIASLANLALPPLPNLMGELMILTSLFNWSWWTIALTGLGTLITASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|213136301|gb|ACJ43839.1| NADH dehydrogenase subunit 4 [Salamandra salamandra] Length = 459 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 137/382 (35%), Positives = 216/382 (56%), Gaps = 11/382 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + VD IS L+VLT +L P L+S ++ N R Y+I ++L++ +I AF S ++ Sbjct: 56 MTVDQISSPLLVLTCWLLPLMTLASQNHMKLNPLTRQRAYLIMLVILQASLIFAFSSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 116 ILFYIAFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLTLQTSLGSLS 175 Query: 194 IIDLYAMSKFPFSIQYW---MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +I +M + S Y +W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 LI-FISMLQPTLSQDYMSMILWLACLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P + L+L ++ SL+ M QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGIIRITIMLTPLMKEMSYPFMI-LALWGVVMTSLICMRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V + GA+ M+SHGL+SSALF + Y+R H+R + G MP Sbjct: 294 MGLVIAATLIQTPWSMTGAIILMISHGLISSALFCLANLNYERTHSRTLLLIRGAQTIMP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 ++ ++NM LP + GE +++S+F S ++ G +++ALY+L+++ Sbjct: 354 LMTTWWLLTNLSNMALPPSMNLWGELTIMVSLFNWSLWTILITGVGTLITALYTLYMFLM 413 Query: 431 VVFGVSKCEKVQQLKDLSLRER 452 G + + Q+ RE Sbjct: 414 TQRGPTP-PHLNQMNPSHTREH 434 >gi|215260092|ref|YP_002327450.1| NADH dehydrogenase subunit 4 [Scarus ghobban] gi|213138612|gb|ACJ45005.1| NADH dehydrogenase subunit 4 [Scarus ghobban] Length = 459 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 131/357 (36%), Positives = 201/357 (56%), Gaps = 8/357 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 +G D +S L+VL+ +L P IL+S + R Y+ + L++ +I AF + + Sbjct: 57 MGTDPLSGPLLVLSCWLLPLMILASQNHLALEPISRQRTYISLMITLQAFLILAFGATER 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++VM + S Sbjct: 117 IMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLVMHNTTGSLS 176 Query: 194 IIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + L F + W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 177 TLTLQFTPTFTSTSYANKACWVACLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L L PL + P I L+L II + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGIMRVLTILEPLTKEMSYPFII-LALWGIIMTGSICLRQTDLKALIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V GI S G+ GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 296 GLVVAGILSQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMALPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP + E +VI ++F S +L G +++A YSL+++ Sbjct: 356 MATSWFIASLANLALPPLPNLMAELMVISTMFDWSPWTLILTGAGTLITAGYSLYMF 412 >gi|241140654|gb|ACS66813.1| NADH dehydrogenase subunit 4 [Lagocephalus lunaris] Length = 458 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 135/361 (37%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQE--NFREYMIAFLV-LESMVIGAFLS 131 ++H+ D +S L+VL+ +L P IL+S ++QE N + I L L+ +I AF + Sbjct: 54 NHHVATDPLSTPLLVLSCWLLPLMILASQNHTVQEPINRQRTFITLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNTNG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLAYSDPLQLATLTDKLW-WAACILAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L L PL + P I L+L II S + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRILTTLEPLTKELSYPFII-LALWGIIMTSSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVSGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + ++AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 ALPLMAAWWFIASLANLALPPLPNLMGELMILTSLFNWSWWTIALTGLGTLITASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|121582409|ref|YP_980187.1| NADH dehydrogenase subunit 4 [Coleonyx variegatus] gi|121309357|dbj|BAF43975.1| NADH dehydrogenase subunit 4 [Coleonyx variegatus] Length = 453 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 123/361 (34%), Positives = 202/361 (55%), Gaps = 6/361 (1%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGA 128 +F + +G+D IS L++L+ +L P ++S ++ R +++ +L+S ++ Sbjct: 51 HFTNTIMGLDHISTPLLILSAWLLPLMAIASQYHLKNQPATRKRTFLMTTALLQSTLVLT 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + D++ FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L AI+ + Sbjct: 111 FSATDLMTFYIMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIAILHIYS 170 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 +++ + P MW+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 171 TTNLTTMFMMATNQHPPSWTTTMMWLGCLLAFLVKMPLYGLHLWLPKAHVEAPIAGSMVL 230 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG IR L PL + P I L+L +I SL+ + QTD+K +IAYSS Sbjct: 231 AAILLKLGGYGIIRITPILPPLTQTIYLPFII-LALWGMIMTSLICLRQTDLKSIIAYSS 289 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG VT + GAM M++HGL SS LF Y+R H+R + GL Sbjct: 290 VSHMGLVTAAALIHTPWSITGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLIARGLQL 349 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P ++ ++AN+ LP T +GE ++I ++F S ++ +++A YSL++ Sbjct: 350 ILPLMTTWWLMASLANLALPPTINLMGELIIISTLFSWSTPTILITGLTTLITATYSLYI 409 Query: 428 Y 428 + Sbjct: 410 F 410 >gi|165932531|ref|YP_001650771.1| NADH dehydrogenase subunit 4 [Solenostomus cyanopterus] gi|154758746|dbj|BAF74895.1| NADH dehydrogenase subunit 4 [Solenostomus cyanopterus] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 150/404 (37%), Positives = 224/404 (55%), Gaps = 16/404 (3%) Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIG 127 ++ CSY +D +S L+ L+ +L P +L+S Q +N R Y+ + L+ +++ Sbjct: 51 NFNCSYT-SLDDLSSPLIFLSCWLLPLMLLASQNHTQTQNLVKQRLYITLLVSLQVLLVL 109 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 AF +++ F+I FEA+L+P +II WG ER+ A F LYT GS+ +L A++VM Sbjct: 110 AFSMNNLISFFIMFEATLLPTLIIITRWGSQKERLEAGKYFMLYTLVGSLPLLVALMVMQ 169 Query: 187 WEKKTSSIIDL-YAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + S + L A S +P +S W W+A F +F +K+PM+ H WLP AHV+AP AG Sbjct: 170 STSYSLSFLGLSIAKSFYPNTYSDMIW-WVACFMAFLVKMPMYTTHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + PL P + +P+ LSL + SL+ + QTDIK LI Sbjct: 229 SMVLAAVLLKLGGYGMMR-MAPLMPTMTVQMSPLFIILSLWGAVMTSLICLRQTDIKALI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+ HMG V +GI S G+ GA+ M HGL SSALF Y+R H+R + Sbjct: 288 AYSSVGHMGLVIMGILSQTALGINGALILMFMHGLTSSALFCLAFTNYERSHSRTLILAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ +P A ++ANM LP + E +IM +F S L ++L A Y Sbjct: 348 GVQTLLPLMAAWWFFSSLANMALPPLPSAVAELSIIMGMFDWSKWTLALLGGSMLLVAGY 407 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 SL+L+ V GV ++ + RE + V P+ +LTV Sbjct: 408 SLYLFLVVQRGVLP-PHMKAIPPSYTREHLLMSLHVMPMILLTV 450 >gi|310788868|gb|ADP24437.1| NADH dehydrogenase subunit 4 [Acrossocheilus monticola] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYIMLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQTTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPMQLNSWGHTLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 GHMGLVAGGILIQTPWGFSGAIILMIAHGLASSALFCLANTTYERTHSRTMVLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|538470|gb|AAA67394.1| presumptive protein 4 [Sceloporus grammicus] gi|538485|gb|AAA67406.1| presumptive protein 4 [Sceloporus grammicus] Length = 461 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 199/364 (54%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + L +D IS L+VL+ +L P +L+S ++ R +++ +L++ +I F Sbjct: 52 FSTPQLMIDPISAPLLVLSCWLLPLMVLASQNHLKLEPLHRKRVFLMTISILQTFLILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 ++++ L YI FEA+LIP +II WG ER+ A F YT S+ +L AI+ + Sbjct: 112 SAINLTLLYIMFEATLIPTLIIITRWGNQQERLTAGTYFLFYTLASSLPLLIAILYFNTK 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 SSI+ L P W MW A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 NHHSSIMLLQLTQ--PQLTNTWSNVFMWAACLLAFMVKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+G YG +R + L P+ + + P + L+L I+ S + M QTD+K LIA Sbjct: 230 MVLAAILLKLGSYGIMRITMLLMPMTPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GAM M++HGL SS LF Y+R HTR + G Sbjct: 289 YSSVSHMGLVIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 P + ++ + NM LP + +GE L+I+S+F SN +L G +++A+YS Sbjct: 349 FQIIFPLMSTWWLMANLTNMALPPSINLMGELLIIVSLFNWSNPTILLTGLGTLITAMYS 408 Query: 425 LWLY 428 L ++ Sbjct: 409 LHMF 412 >gi|208969327|ref|YP_002267966.1| NADH dehydrogenase subunit 4 [Scarus rubroviolaceus] gi|207081496|gb|ACI23041.1| NADH dehydrogenase subunit 4 [Scarus rubroviolaceus] Length = 459 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 131/357 (36%), Positives = 201/357 (56%), Gaps = 8/357 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 +G D +S L+VL+ +L P IL+S + R Y+ + L++ +I AF + ++ Sbjct: 57 MGTDPLSGPLLVLSCWLLPLMILASQNHLASEPISRQRTYISLMITLQAFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++VM + S Sbjct: 117 IMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLVMHNTTGSLS 176 Query: 194 IIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + L F + W A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 177 TLTLQFTPTFTSTSYANKACWAACLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L L PL + P I L+L II + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGIMRVLTILEPLTKEMSYPFII-LALWGIIMTGSICLRQTDLKALIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V GI S G+ GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 296 GLVVAGILSQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMALPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP + E +VI ++F S +L G +++A YSL+++ Sbjct: 356 MATSWFIASLANLALPPLPNLMAELMVICTMFDWSPWTLILTGAGTLITAGYSLYMF 412 >gi|119360201|ref|YP_913519.1| NADH dehydrogenase subunit 4 [Gobio gobio] gi|119225215|dbj|BAF41580.1| NADH dehydrogenase subunit 4 [Gobio gobio] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLDSWGHKIWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ Q P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKQLVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGTGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMTQRGPTP-SHIMKLPPFHTREHLLM 438 >gi|260766670|gb|ACX50378.1| NADH dehydrogenase subunit 4 [Moxostoma cf. lachneri MHD-2009] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAIWWFIANLANLALPPLPNLMGELMIISTLFNWSPWTIALTGTGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIAGLPPFHTREHLLM 438 >gi|169666023|gb|ACA63669.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus qiubeinsis] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L + +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRSYITLLASLRTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAMWWFTANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|83309053|ref|YP_423932.1| NADH dehydrogenase subunit 4 [Gekko gecko] gi|37538481|gb|AAQ93003.1| NADH dehydrogenase subunit 4 [Gekko gecko] Length = 456 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 139/386 (36%), Positives = 207/386 (53%), Gaps = 13/386 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV----LESMVIGAFLSLDM 134 L +D IS L++++ +L P ++S + AFL L++ +I F + D+ Sbjct: 57 LALDNISTPLIIMSAWLLPLMAIASQHHLANEPTNRKRAFLATCAALQTTLIMTFTTTDL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FE +LIP ++I WG +ER+ A F YT GS+ +L AI+ + + SS Sbjct: 117 IMFYIMFETTLIPTLILITRWGAQAERLNAGMYFLFYTLSGSLPLLIAILTLQTKYNHSS 176 Query: 194 IIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++ L K + MW+A +F IK+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 177 MLMLMLTQKELLTTNSDMLMWLACMMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVL 236 Query: 252 LKMGGYGCIRFLLPLFP--LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 LK+GGYG IR LL L P L + P I LSL +I SL+ + QTD+K +IAYSSI+ Sbjct: 237 LKLGGYGIIRILL-LLPNHLTQTMYLPFI-VLSLWGMIMTSLICLRQTDLKSIIAYSSIS 294 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V + GAM M++HGL SSALF Y+R+HTR + GL M Sbjct: 295 HMGLVITATMIATPWSITGAMILMIAHGLTSSALFCLANTNYERIHTRTLILTRGLTFVM 354 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + F++ N+ LP T +GE L+I+S F + T L + + YSL+++ Sbjct: 355 PLMMTWWLAFSLMNLALPPTINLLGELLIIISTFNWNMTTIFLTGAATLTTTTYSLYIFI 414 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 +K K L RE ++ Sbjct: 415 TTQRTNTKPNKT--LTPTQTREHLLM 438 >gi|62086604|dbj|BAD91703.1| NADH dehydrogenase subunit 4 [Balaenoptera acutorostrata] Length = 459 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 207/356 (58%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + R+ Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLILTMWLLPLMLMASQSHLIKEPPIRKKLYITMLVTLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALMYL---QNTAGTLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAQPLSTSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSSI+HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSISHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MS+F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSIFSWSNPTILLMGTNIVITALYSLYM 410 >gi|84488660|ref|YP_448799.1| NADH dehydrogenase subunit 4 [Testudo graeca] gi|67005603|gb|AAY62403.1| NADH dehydrogenase subunit 4 [Testudo graeca] Length = 459 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 205/371 (55%), Gaps = 14/371 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKS-IQE---NFREYMIAFLVLESMVIGAF 129 F +++LGVD IS L++L+ +LTP IL+S I E R +M + L+ +I AF Sbjct: 51 FSNHYLGVDRISTPLLILSCWLTPLMILASQNHLISEPVSRKRIFMTTIIFLQISLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE +LIP VII WG ER+ A F YT GS+ +L A+ M + Sbjct: 111 STTELIMFFIAFETTLIPTLVIITRWGNQMERLNAGTYFLFYTLMGSLPLLVALSYMQTQ 170 Query: 189 KKTSSIIDLYAMS-KFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T + Y M P W W A +F +K+P++ H WLP AHV+AP AG Sbjct: 171 NGT---LSTYMMQLNQPTMTTSWAHSMWWFALLIAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG IR ++ L PL+ P + ++L +I S + + QTD+K LI Sbjct: 228 SMILAAVLLKLGGYGIIRIMMTLNPLSKTLSYPFMA-MALWGVIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 287 AYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGLTSSMLFCLANTNYERTHSRMLLLTQ 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 + +P + ++ ++ NM LP T +GE +I S+F SN ++ G +++A Y Sbjct: 347 NMQLLLPLMGLWWLLASLTNMALPPTINLMGELTIITSLFNWSNITILMTGLGTLITATY 406 Query: 424 SLWLYRKVVFG 434 +L++ +G Sbjct: 407 TLYMLIMTQWG 417 >gi|19807664|ref|NP_612134.1| NADH dehydrogenase subunit 4 [Ictalurus punctatus] gi|19702269|gb|AAL93231.1|AF482987_10 NADH dehydrogenase subunit 4 [Ictalurus punctatus] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 141/399 (35%), Positives = 219/399 (54%), Gaps = 17/399 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++G D +S L+VLT +L P IL+S I+ R Y+ L++ +I AF + Sbjct: 54 NLYMGTDPLSTPLLVLTCWLLPLMILASQNHIKAEPIARQRNYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG R+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAVRLSAGTYFLFYTLAGSLPLLVALLLL--HQN 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGSLSMLIIQYSQPMALSSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R +L L PL+ PVI L+L ++ + + QTD+K LIAYS Sbjct: 232 LATILLKLGGYGMMRMMLMLDPLSKDMVYPVIA-LALWGVLMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGALVLMIAHGLVSSALFCLANTTYERTHSRTMILARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 IIFPLTAVWWFLSNLANLALPPLPNLMGELVIITALFNWSPWTLILTGAGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVL 461 L+ G + + L+ RE + + P+A+L Sbjct: 411 LFLMSQRG-PLPQHIINLQPFHTREHLLMILHLLPVALL 448 >gi|62184490|ref|YP_220741.1| NADH dehydrogenase subunit 4 [Balaenoptera brydei] gi|62086618|dbj|BAD91716.1| NADH dehydrogenase subunit 4 [Balaenoptera brydei] gi|90265658|dbj|BAE91875.1| NADH4 [Balaenoptera brydei] Length = 459 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 131/356 (36%), Positives = 207/356 (58%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKS-IQE---NFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S I+E + Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLIKEPPVRKKLYITMLITLQTLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+V + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALVYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAEPLSTSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MSVF SN +L +V++ALY+L++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSVFSWSNPTILLMGANIVITALYTLYM 410 >gi|119360577|ref|YP_913766.1| NADH dehydrogenase subunit 4 [Pseudaspius leptocephalus] gi|119225523|dbj|BAF41866.1| NADH dehydrogenase subunit 4 [Pseudaspius leptocephalus] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINSEPVSRQRLYIMLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYAQPLALNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILVQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMVLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHIMKLPPFHTREHLLM 438 >gi|317176743|dbj|BAJ54541.1| NADH dehydrogenase subunit 4 [Paramormyrops sp. CU 6227] Length = 460 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/388 (35%), Positives = 218/388 (56%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+S I + R Y+ + L++ +I AF + Sbjct: 54 NHYMATDPLSTPLLVLTCWLLPLMILASQNHINQEPINRQRTYITLLISLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKDLG 173 Query: 191 TSSIIDL--YAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + YA +K + + W W +F +K+ ++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTMQYYAPTKMTAWGDKIW-WAGCLLAFLVKMALYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 VSHMGLVASGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + +AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ILPLMTAWWFITNLANLALPPLPNLMGELMIITSMFNWSYWTILLTGLGTLITAAYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L+ RE ++ Sbjct: 412 FLMTQRGPTPAHTI-TLQPSHTREHLLM 438 >gi|326909368|ref|YP_004327637.1| NADH dehydrogenase subunit 4 [Niwaella delicata] gi|300508087|dbj|BAJ11472.1| NADH dehydrogenase subunit-4 [Niwaella delicata] Length = 460 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I N + I LV L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHINSEPINRQRLYITLLVFLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLNTWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGTICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMTQRGPTPAH-ITGLPPFHTREHLLM 438 >gi|167463150|ref|ZP_02328239.1| proton-translocating NADH-quinone oxidoreductase, chain M [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383089|ref|ZP_08056916.1| monovalent cation/H+ antiporter-like protein subunit D [Paenibacillus larvae subsp. larvae B-3650] gi|321152751|gb|EFX45377.1| monovalent cation/H+ antiporter-like protein subunit D [Paenibacillus larvae subsp. larvae B-3650] Length = 541 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 159/497 (31%), Positives = 263/497 (52%), Gaps = 56/497 (11%) Query: 49 LFVWSVFDKGRSSFQMIEYYHWI--------------DYF--CSYHLGVDGISILLVVLT 92 ++++++F GR Q E ++WI YF + LG+DG+S+ LV LT Sbjct: 47 IYIYALFQSGRG-MQFKESFNWITFPLNKEFFGEGVQSYFFNVTLSLGIDGLSLPLVGLT 105 Query: 93 TFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 + +S+ ++ + Y I FLVLE+ V+G F + D+ LF++FFE +LIPMF +I Sbjct: 106 ALVFIAAAFASFH-VKTRLKLYYIWFLVLETGVMGVFTAQDLFLFFLFFELTLIPMFFLI 164 Query: 153 GVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM------CWEKKTSSIIDLYA------- 199 G+WG +R A+ KF LY GS M A +++ E S +I Y+ Sbjct: 165 GMWGEMDREKASMKFLLYNGVGSALMFIAFLIVIVTAGFTQEMSNSGVIVQYSGQLDTIM 224 Query: 200 -----------------MSKFPFSIQYWMWIAFF----CSFAIKIPMFPFHTWLPNAHVQ 238 + PF + M I F +F IK+P+FPFHTW+ H + Sbjct: 225 NNLFQDPNALVNMPVNGPQENPFFLSEAMRIGLFLLMLSAFGIKLPLFPFHTWMLKVHTE 284 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP + + +GI+LKMG YG IRF + LFP + A ++ L ++ I+Y ++++ VQ + Sbjct: 285 APPSIVMIHSGILLKMGAYGLIRFGVLLFPQQAVDLAWLLALLGVVNILYGAILAFVQKE 344 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 K ++AYSSI+HMG V +G+ + G++GA+FQ++SHGL+S+ LF VG +Y+R T + Sbjct: 345 FKLVLAYSSISHMGIVLLGLAAMNTIGMQGAVFQLVSHGLISALLFLLVGTVYERTGTTE 404 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GGL P + +++ +A++GLPG SGFI EFL + +F A++ G++ Sbjct: 405 LGGLGGLAKPAPFISGMLLAAGLASLGLPGMSGFISEFLSFLGLFGVYKGYAIVGVVGII 464 Query: 419 LSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478 +A+Y L + +G + E++ + D E + + V G+YP I D Sbjct: 465 FTAVYVLRGVMSITYGPAP-ERITAVPDAKWAEAVPMLMLIAAIVLIGVYPAIISDPLQQ 523 Query: 479 PL---SSIIENYTLKTG 492 + + +I+++ K G Sbjct: 524 TVAGFNQVIQSFAGKIG 540 >gi|317176645|dbj|BAJ54450.1| NADH dehydrogenase subunit 4 [Hyperopisus bebe] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 135/388 (34%), Positives = 212/388 (54%), Gaps = 15/388 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + + Sbjct: 56 YMATDQLSTPLLVLTCWLLPLMILASQNHIAPEPINRQRTYITLLISLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIL---QKDL 172 Query: 193 SIIDLYAMSKF-PFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + + M + P + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 GTLSMLTMQYYNPTKMTAWGDKIWWTGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + +AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ILPLMTAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTIILTGLGTLITAAYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L+ RE ++ Sbjct: 412 FLMTQRGPTPAHTI-TLQPSHTREHLLM 438 >gi|110238767|dbj|BAE97658.1| NADH dehydrogenase subunit 4 [Cyprinus carpio] gi|310788874|gb|ADP24440.1| NADH dehydrogenase subunit 4 [Cyprinus multitaeniata] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVLQYSQPLQLNSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|260766610|gb|ACX50338.1| NADH dehydrogenase subunit 4 [Hypentelium roanokense] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 208/362 (57%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + Sbjct: 54 SMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--YQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P +++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLESWGHKLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L I+ + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVILDPLSKELAYPFIV-LALWGIVMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGMGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|91176272|ref|YP_537141.1| NADH dehydrogenase subunit 4 [Balaenoptera omurai] gi|90265616|dbj|BAE91836.1| NADH4 [Balaenoptera omurai] gi|90265630|dbj|BAE91849.1| NADH4 [Balaenoptera omurai] Length = 459 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 135/383 (35%), Positives = 212/383 (55%), Gaps = 13/383 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKS-IQE---NFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S I+E + Y+ ++L++++I F + +++LF Sbjct: 59 DSLSTPLLMLTMWLLPLMLMASQSHLIKEPPVRKKLYITMLIMLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALVYL--QNTTGSLNF 176 Query: 195 --IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + +A P +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LLLQHWAEPLSPSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL +++ A LSL +I S + QTD+K LIAYSSI+HM Sbjct: 237 KLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSTCLRQTDLKSLIAYSSISHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP T IGE LV+MS+F SN +L +V++ALY+L++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELLVVMSIFSWSNPTILLMGANIVITALYTLYMLIMTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMV 455 G + + RE ++ Sbjct: 416 RG-KHTHHINNINPSFTREHALM 437 >gi|283099271|ref|YP_003359322.1| NADH dehydrogenase subunit 4 [Acheilognathus intermedia] gi|146142396|gb|ABQ01656.1| NADH dehydrogenase subunit 4 [Acheilognathus intermedia] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVTQYTQPLALDSWSDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMITHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPMTIALTGLGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMTQRGPTPSHII-KLSPFHTREHLLM 438 >gi|322422781|ref|YP_004222570.1| NADH dehydrogenase subunit 4 [Castor canadensis] gi|321398241|emb|CBX20853.1| nadh dehydrogenase subunit 4 [Castor canadensis] Length = 459 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 207/363 (57%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + + Y+ ++L++++I F + +++LF Sbjct: 59 DALSAPLLILTAWLLPLMIMASQQHMNKEPVGRKKMYITMLVLLQTLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYL---QNSLGSLN 175 Query: 197 LYAMSKFPFSIQY-W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ ++ + + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 LHILNNYSEQLNLSWSNDLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ + P + LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITILLSPITNHMMYPFML-LSLWGMVMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQSPWSFMGATALMVAHGLTSSVLFCLANTNYERVHSRTMLLTRGLQTMLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A+ + ++ N+ LP T IGE ++I S F SN +L +++ALY+L++ Sbjct: 355 MALWWLTASLTNLALPPTINLIGELMIITSSFSWSNFTILLMGINTLITALYTLYMLTTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|310788880|gb|ADP24443.1| NADH dehydrogenase subunit 4 [Onychostoma simum] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRSYIMLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLSSWGHTIWWASCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 GHMGLVAGGILIQTPWGFSGAIILMIAHGLASSALFCLANTAYERTHSRTMVLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-SHITGLQPFHTREHLLL 438 >gi|51339509|gb|AAU00515.1| NADH dehydrogenase subunit 4 [Taxidea taxus] gi|295641253|gb|ADG22790.1| NADH dehydrogenase subunit 4 [Taxidea taxus] Length = 459 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 128/384 (33%), Positives = 209/384 (54%), Gaps = 17/384 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L++LTT+L P +++S + + + Y+ + L+ ++ F + ++++ Sbjct: 58 TDSLSAPLLMLTTWLLPLMLMASQHHLSKETLIRKKLYITMLITLQLFLMMTFAATELVM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + S + Sbjct: 118 FYIMFEATLMPTLIIITRWGNQAERLNAGLYFLFYTLTGSLPLLIALL---WAQNNSGTL 174 Query: 196 DLYAMSKF--PFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 +L + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 NLLVLQHWTQPLS-DSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R + L PL S + A LSL +I S + + QTD+K LIAYSS++ Sbjct: 234 VLLKLGGYGMMRITMMLNPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HM V + + GA M++HGL SS LF Y+R H+R + GL + Sbjct: 293 HMALVIMAVLIQSPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQMLL 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A ++ ++ N+ LP T +GE V+++ F SN +L + ++ALYSL++ Sbjct: 353 PLMASWWLLASLTNLALPPTINLMGELFVVVASFSWSNITIILMGLNITITALYSLYMLI 412 Query: 430 KVVFGVSKCEKVQQLKDLSLRERC 453 G ++ +K RE C Sbjct: 413 TTQRG-KHTHHIKNIKPTYTRENC 435 >gi|117649978|gb|ABK54034.1| NADH dehydrogenase subunit 4 [Cervus nippon taiouanus] Length = 459 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 205/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|261866647|ref|YP_003264300.1| NADH dehydrogenase subunit 4 [Carassius auratus x Megalobrama amblycephala triploid hybrid] gi|260595483|gb|ACX46738.1| NADH dehydrogenase subunit 4 [Carassius auratus x Megalobrama amblycephala triploid hybrid] gi|270301401|gb|ACZ69581.1| NADH dehydrogenase subunit 4 [Carassius auratus x Cyprinus carpio] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|119360271|ref|YP_913415.1| NADH dehydrogenase subunit 4 [Barbus barbus] gi|119225103|dbj|BAF41476.1| NADH dehydrogenase subunit 4 [Barbus barbus] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPIGRQRSYIMLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLQLNTWGHMAWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAMWWFIANLANLALPPLPNLMGELMIITTLFDWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|119360409|ref|YP_913558.1| NADH dehydrogenase subunit 4 [Pseudorasbora pumila] gi|119225257|dbj|BAF41619.1| NADH dehydrogenase subunit 4 [Pseudorasbora pumila] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYSQPLLLNSWGHNIWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV ++ +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWLIANLANLALPPLPNLMGELMIITTLFNWSPWTIMLTGAGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L RE ++ Sbjct: 411 MFLMSQRGPTPSH-IMKLPPFHTREHLLM 438 >gi|55338288|ref|YP_133902.1| NADH dehydrogenase subunit 4 [Carassius auratus x Cyprinus carpio x Carassius cuvieri] gi|54288029|gb|AAV31464.1| NADH dehydrogenase subunit 4 [Carassius auratus x Cyprinus carpio x Carassius cuvieri] gi|229002670|dbj|BAH57771.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002675|dbj|BAH57773.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002677|dbj|BAH57774.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002679|dbj|BAH57775.1| NADH dehydrogenase subunit 4 [Carassius auratus] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|310788894|gb|ADP24450.1| NADH dehydrogenase subunit 4 [Puntius titteya] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ +L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVNRQRSYIMLLTLLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + + Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLVGSLPLLVALLLL--QNSSG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPMQLNSWGHMIWWTGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V G+ G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGVLIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFTANLANLALPPLPNLMGELMIITTLFNWSTWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPAP-SHIMGLQPYHTREHLLM 438 >gi|5819103|ref|NP_006898.1|ND4_10014 NADH dehydrogenase subunit 4 [Balaenoptera physalus] gi|128740|sp|P24975|NU4M_BALPH RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|12780|emb|CAA43448.1| NADH dehydrogenase subunit 4 [Balaenoptera physalus] Length = 459 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 132/356 (37%), Positives = 208/356 (58%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKS-IQE---NFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S I+E + Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLILTMWLLPLMLMASQSHLIKEPPVRKKLYITMLITLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+V + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ + WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAQPLSTSWSNIFMWLACMMAFLVKMPLYGLYLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GGL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILPGGLQVFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MSVF SN +L +V++ALYSL++ Sbjct: 355 MASWWLLASLTNLALPPTINLIGELLVVMSVFSWSNPTILLMGTNIVITALYSLYM 410 >gi|260766598|gb|ACX50330.1| NADH dehydrogenase subunit 4 [Chasmistes brevirostris] gi|260766601|gb|ACX50332.1| NADH dehydrogenase subunit 4 [Deltistes luxatus] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 137/362 (37%), Positives = 205/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 S HL D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + Sbjct: 54 SMHLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLASLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMTILQYSQPLVLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV +AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFAANLANLALPPLPNLMGELMIITSLFSWSPWTIALTGVGTLITAGYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|229002685|dbj|BAH57778.1| NADH dehydrogenase subunit 4 [Carassius auratus] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|38018073|ref|NP_937917.1| NADH dehydrogenase subunit 4 [Notacanthus chemnitzi] gi|25006404|dbj|BAB88165.1| NADH dehydrogenase subunit 4 [Notacanthus chemnitzi] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 207/365 (56%), Gaps = 12/365 (3%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGA 128 Y + ++ D +S L+VLT +L P IL+S I + R Y+ + L+ +I A Sbjct: 51 YSSNPYMATDPLSTPLLVLTCWLLPLMILASQNHISPEPENRQRTYITLLISLQVFLIMA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 111 FGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLIL-- 168 Query: 188 EKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +K ++ L P S+ W W +F +K+P++ H WLP AHV+AP AG Sbjct: 169 QKDLGTLSMLIMHYTQPMSLNSWGDKIWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +I Sbjct: 229 SMVLAAVLLKLGGYGMMRMMVMLNPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSMI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGLVSSALF Y+R+H+R + Sbjct: 288 AYSSVSHMGLVAGGILIQTPWGFTGAIILMVAHGLVSSALFCLANTNYERIHSRTLLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A + +AN+ LP +GE ++I S+F S +L G +++A Y Sbjct: 348 GLQMILPLMAAWWFLANLANLALPPLPNLMGELMIITSMFNWSWITIILTGLGTLITASY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|189095552|ref|YP_001936259.1| NADH dehydrogenase subunit 4 [Carassius cuvieri] gi|261866675|ref|YP_003264326.1| NADH dehydrogenase subunit 4 [Carassius auratus x Megalobrama amblycephala pentaploid hybrid] gi|13516947|dbj|BAB40357.1| NADH dehydrogenase subunit 4 [Carassius cuvieri] gi|260595497|gb|ACX46751.1| NADH dehydrogenase subunit 4 [Carassius auratus x Megalobrama amblycephala pentaploid hybrid] gi|311087981|gb|ADP68059.1| NADH dehydrogenase subunit 4 [Carassius auratus x Megalobrama amblycephala pentaploid hybrid] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLSSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|260766589|gb|ACX50324.1| NADH dehydrogenase subunit 4 [Catostomus rimiculus] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 137/362 (37%), Positives = 205/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 S HL D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + Sbjct: 54 SMHLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLASLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMTILQYSQPLVLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV +AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFAANLANLALPPLPNLMGELMIITSLFSWSPWTIALTGVGTLITAGYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|119360675|ref|YP_913610.1| NADH dehydrogenase subunit 4 [Acantopsis choirorhynchos] gi|119225313|dbj|BAF41671.1| NADH dehydrogenase subunit 4 [Acantopsis choirorhynchos] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NQYLASDPLSTPLLVLTCWLLPLMILASQNHINPEPIARQRLYITLLTFLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQHSEPLTLNTWGHKLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ Q P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKQLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A+ +AN+ LP +GE +I ++F S L G +++A YSL+ Sbjct: 351 MIFPLAAIWWFTANLANLALPPLPNLMGELTIITAMFNWSPWTIALTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L + RE ++ Sbjct: 411 LFLMTQRGPTP-NHIVGLPPMHTREHLLM 438 >gi|280978135|ref|YP_003345082.1| NADH dehydrogenase subunit 4 [Kaupichthys hyoproroides] gi|271280162|dbj|BAI53207.1| NADH dehydrogenase subunit 4 [Kaupichthys hyoproroides] Length = 460 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 135/388 (34%), Positives = 217/388 (55%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VL+ +L P IL+S + R Y+ ++L+ + AF + Sbjct: 54 NTYIATDPLSTPLLVLSCWLLPLMILASQNHMAPEPTIRQRTYITLLILLQIFLTLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLVIITRWGNQTERLSAGVYFLFYTLAGSLPLLVALLMLQKDLG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + + P + + W W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTIQYTNPLPLTTWGDKVW-WVACVMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K +IAYSS Sbjct: 233 AAVLLKLGGYGMMRMLVILNPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVAGGIMIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGMQA 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + +ANM LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ILPLMATWWFIMNLANMALPPLPNLMGELMIITSIFNWSYWTILLTGLGTLITAGYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L+ RE ++ Sbjct: 412 FLMTQRGKTP-NHIIALEPSHTREHLLL 438 >gi|260766544|gb|ACX50294.1| NADH dehydrogenase subunit 4 [Carpiodes cyprinus] Length = 460 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 STYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEMIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P +++ + W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLALESYGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILVQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFVANLANLALPPLPNLMGELMIITTMFNWSPWTIALTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + V L RE ++ Sbjct: 411 LFLMSQRGPAP-NHVMGLPPFHTREHLLM 438 >gi|229002660|dbj|BAH57766.1| NADH dehydrogenase subunit 4 [Carassius auratus] Length = 460 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|51235014|ref|YP_063504.1| NADH dehydrogenase subunit 4 [Carassius auratus x Cyprinus carpio] gi|52221020|ref|YP_087040.1| NADH dehydrogenase subunit 4 [Carassius carassius] gi|254033655|ref|YP_003058374.1| NADH dehydrogenase subunit 4 [natural gynogenetic Carassius auratus red var.] gi|261866633|ref|YP_003264287.1| NADH dehydrogenase subunit 4 [Carassius auratus x Megalobrama amblycephala tetraploid hybrid] gi|50657571|gb|AAT79575.1| NADH dehydrogenase subunit 4 [Carassius auratus x Cyprinus carpio] gi|51339771|gb|AAU00638.1| NADH dehydrogenase subunit 4 [Carassius carassius] gi|229002656|dbj|BAH57764.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002681|dbj|BAH57776.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002683|dbj|BAH57777.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002687|dbj|BAH57779.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002689|dbj|BAH57780.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002691|dbj|BAH57781.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|251765226|gb|ACT15381.1| NADH dehydrogenase subunit 4 [natural gynogenetic Carassius auratus red var.] gi|260595469|gb|ACX46725.1| NADH dehydrogenase subunit 4 [Carassius auratus x Megalobrama amblycephala tetraploid hybrid] gi|262211520|gb|ACY35606.1| NADH dehydrogenase subunit 4 [Carassius auratus auratus] gi|326320986|gb|ADZ53487.1| NADH dehydrogenase subunit 4 [Carassius gibelio] gi|326321000|gb|ADZ53500.1| NADH dehydrogenase subunit 4 [Carassius gibelio] Length = 460 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|237869038|ref|YP_002907370.1| NADH dehydrogenase subunit 4 [Brienomyrus niger] gi|237648917|dbj|BAH59009.1| NADH dehydrogenase subunit 4 [Brienomyrus niger] Length = 460 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 136/390 (34%), Positives = 213/390 (54%), Gaps = 15/390 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 SPYMATDPLSTPLLVLTCWLLPLMILASQNHISPEPTNRQRTYITLLISLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIL---QK 170 Query: 191 TSSIIDLYAMSKF-PFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + + M + P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 DLGTLSMLTMQYYNPTKMTAWGDKIWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMVMLTPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + +AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QMVLPLMTAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTIILTGLGTLITAAYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + + L+ RE ++ Sbjct: 410 YMFLMTQRGPTPAHTI-TLQPSHTREHLLM 438 >gi|300507561|dbj|BAJ11183.1| NADH dehydrogenase subunit-4 [Cobitis striata] gi|300507566|dbj|BAJ11187.1| NADH dehydrogenase subunit-4 [Cobitis striata] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLVSLQTFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLHSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF IY+R H+R + GL Sbjct: 291 SVSHMGLVAGGILVQTPWGFTGAIILMIAHGLVSSALFCLANTIYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTATWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGIGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTP-PHITGLPPFHTREHLLL 438 >gi|229002642|dbj|BAH57757.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002652|dbj|BAH57762.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002654|dbj|BAH57763.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002658|dbj|BAH57765.1| NADH dehydrogenase subunit 4 [Carassius auratus] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|300507581|dbj|BAJ11199.1| NADH dehydrogenase subunit-4 [Cobitis striata] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVSLQTFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLHSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF +Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTVYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTATWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGVGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + + L RE ++ Sbjct: 411 LFLMSQRGPTP-QHITGLPPFHTREHLLL 438 >gi|296940261|ref|YP_003667943.1| NADH dehydrogenase subunit 4 [Carassius gibelio] gi|229002666|dbj|BAH57769.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|229002668|dbj|BAH57770.1| NADH dehydrogenase subunit 4 [Carassius auratus] gi|268373360|gb|ACZ03933.1| NADH dehydrogenase subunit 4 [Carassius gibelio] gi|269849170|gb|ACZ49738.1| NADH dehydrogenase subunit 4 [Carassius gibelio] gi|310788934|gb|ADP24470.1| NADH dehydrogenase subunit 4 [Carassius gibelio] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLDSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|283099341|ref|YP_003359507.1| NADH dehydrogenase subunit 4 [Acheilognathus yamatsutae] gi|146142438|gb|ABQ01695.1| NADH dehydrogenase subunit 4 [Acheilognathus yamatsutae] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 HL D +S L+VLT +L P IL+S I+ R Y+ L++ +I AF + + Sbjct: 56 HLATDPLSTPLLVLTCWLLPLMILASQNHIKPEPLSRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLMIQYVHPLTLHSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ Q P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVLLDPLSKQLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQIPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAAWWFIANLANLALPPLPNLMGELMIITTLFSWSPMTIALTGMGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHIIKLPPFHTREHLLM 438 >gi|260766565|gb|ACX50308.1| NADH dehydrogenase subunit 4 [Catostomus discobolus] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 141/387 (36%), Positives = 215/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ + P +++ W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMMILQYSQPLTLESWGHKFWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFAANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGTGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + V L RE ++ Sbjct: 413 LMSQRGPTPTHIV-GLPPFHTREHLLM 438 >gi|198400399|ref|YP_002221324.1| NADH dehydrogenase subunit 4 [Misgurnus anguillicaudatus] gi|63081817|gb|AAY30680.1| NADH dehydrogenase subunit 4 [Misgurnus anguillicaudatus] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 SLYLATDPLSTPLLVLTCWLLPLMILASQNHIAPEPISRQRLYITLLVFLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGIGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMTQRGPTPMH-ITGLPPFHTREHLLM 438 >gi|261866689|ref|YP_003264339.1| NADH dehydrogenase subunit 4 [Oryzias sinensis] gi|261348395|gb|ACX70652.1| NADH dehydrogenase subunit 4 [Oryzias sinensis] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 136/357 (38%), Positives = 205/357 (57%), Gaps = 14/357 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K + E N + I+ LV L+ +I AF + +M Sbjct: 57 IATDPLSTPLLVLTCWLLPLMILASQKHMAEEPVNRQRTYISLLVSLQIFLILAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLSAGIYFLFYTLAGSLPLLVALLLL--QSSTGS 174 Query: 194 IIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + L P + + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSFLTTQFLPPLQLHTEASKLW-WVGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIAYSSI Sbjct: 234 AVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAYSSI 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G G++ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGILIQTPWGFTGSLILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQVV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + T+AN+ LP +GE ++I S+F SN +L G +++A YSL Sbjct: 353 LPLLATWWFLLTLANLALPPLPNLMGELMIITSLFNWSNWTLLLTGAGTLITASYSL 409 >gi|229927533|ref|YP_002887594.1| NADH dehydrogenase subunit 4 [Diceros bicornis] gi|229473092|gb|ACQ73067.1| NADH dehydrogenase subunit 4 [Diceros bicornis] Length = 459 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 133/379 (35%), Positives = 207/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P I++S + + + Y+ ++L++ +I F + +++ F Sbjct: 59 DPLSAPLLVLTTWLLPLMIMASQHHLSKEPPARKKLYITMLVMLQTFLIMTFTATELISF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A + F YT GS+ +L A+ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGFYFLFYTLTGSLPLLIALTHIQNLTGTLNLLL 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y+ P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 IQYSTQTLPNSWSNAFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L PL S Y A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRITMILNPLTS-YMAYPFLILSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R H+R + GL +P A+ Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQTLLPLMAM 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ + N+ LP T IGE V+MS F SN +L ++++ALYSL++ G Sbjct: 358 WWLLAGLTNLALPPTINLIGELFVVMSSFSWSNITIILMGTNIIITALYSLYMLTTTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 + +K RE Sbjct: 418 -KYTHHINNIKPSFTRENT 435 >gi|300471691|dbj|BAJ11171.1| NADH dehydrogenase subunit-4 [Cobitis striata] gi|300471696|dbj|BAJ11175.1| NADH dehydrogenase subunit-4 [Cobitis striata] gi|300507556|dbj|BAJ11179.1| NADH dehydrogenase subunit-4 [Cobitis striata] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVSLQTFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLHSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF IY+R H+R + GL Sbjct: 291 SVSHMGLVAGGILVQTPWGFTGAIILMIAHGLVSSALFCLANTIYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTATWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGVGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTP-PHITGLPPFHTREHLLL 438 >gi|221164030|ref|YP_002519416.1| NADH dehydrogenase subunit 4 [Sinogastromyzon puliensis] gi|220961567|gb|ACL93239.1| NADH dehydrogenase subunit 4 [Sinogastromyzon puliensis] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 206/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPVTRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIILFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLNSWGHKIWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELVYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIMLTGIGTLITAGYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|119360647|ref|YP_913441.1| NADH dehydrogenase subunit 4 [Labeo batesii] gi|119225131|dbj|BAF41502.1| NADH dehydrogenase subunit 4 [Labeo batesii] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMTMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|46446205|ref|YP_007570.1| putative NADH-ubiquinone oxidoreductase chain M [Candidatus Protochlamydia amoebophila UWE25] gi|46399846|emb|CAF23295.1| putative NADH-ubiquinone oxidoreductase chain M [Candidatus Protochlamydia amoebophila UWE25] Length = 481 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 145/448 (32%), Positives = 244/448 (54%), Gaps = 17/448 (3%) Query: 30 RRSFFGVALGISTINFIFSL---FVWSVFDKGRSSFQMIEYYHWIDYFC-SYHLGVDGIS 85 ++ +LG+S I F F L FVW S FQ Y W ++ L +D IS Sbjct: 26 KKHLKWASLGLSLIPFFFLLGNHFVWI-----GSFFQ----YEWFALLSITFSLEIDSIS 76 Query: 86 ILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASL 145 +L + LT + P ++ N + + L L+ ++ G F++ D++ F IF+EA L Sbjct: 77 LLFLYLTAIIIPIVFMNVNSEKLSNPKLFYGLILFLQGLLGGFFMTRDLVFFTIFWEAML 136 Query: 146 IPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM-SKFP 204 +P++ ++ +WGGS+R AA KF +Y F GS M+ A++ + + T + L S +P Sbjct: 137 LPIYFLMNMWGGSKRHEAAIKFIVYMFAGSALMIAAVLALYFLFGTFDLAQLSTQESTYP 196 Query: 205 FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 + + AF +FA+K P+FPFH WLP+ + QA T+G++ L+G++ K G YG IR L Sbjct: 197 YVNL--IAAAFLLAFAVKTPLFPFHAWLPDTYYQASTSGTILLSGLLSKAGIYGIIRIGL 254 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 LFP + ++P + L++ ++Y +L + Q D K+L+AYSS +H+ ++ IG+F Sbjct: 255 GLFPHVMKAWSPWLLGLAITGVLYGALAAWRQNDFKRLLAYSSFSHVNFILIGLFIFDPI 314 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 +GA+ Q +HG+ +ALF G + +RL I GL MP + F ++++ Sbjct: 315 AQKGAILQAFNHGITITALFLVAGYLENRLGFTIIGTSKGLARYMPNLCWLTFFFVLSSI 374 Query: 385 GLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL 444 LPGT+ F+GE L+ + +F + L +V S +Y L +K+ F +VQ + Sbjct: 375 ALPGTNNFVGELLIFIGLFGKHPYLTALTGLTIVFSVIYMLRWMQKMYFEEPSPYQVQWI 434 Query: 445 KDLSLRERCMVYPIAVLTVFFGIYPVPI 472 DL+ +E +V P+ L ++ G+YP+ I Sbjct: 435 -DLTKKEFLIVAPLIFLNLWIGLYPMGI 461 >gi|5835005|ref|NP_007065.1|ND4_10457 NADH dehydrogenase subunit 4 [Balaenoptera musculus] gi|730204|sp|P41298|NU4M_BALMU RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|414136|emb|CAA51004.1| NADH-ubiquinone oxidoreductase subunit 4 [Balaenoptera musculus] Length = 459 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 208/356 (58%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKS-IQE---NFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S I+E + Y+ ++L++++I F + +++LF Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLIKEPPVRKKLYITMLIMLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+V + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALVYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAKPLSASWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T +GE LV+MSVF SN +L +V++ALY+L++ Sbjct: 355 MATWWLLASLTNLALPPTINLVGELLVVMSVFSWSNPTILLMGANIVITALYTLYM 410 >gi|308745922|ref|YP_003934410.1| NADH dehydrogenase subunit 4 [Leiocassis longirostris] gi|290758091|gb|ADD53038.1| NADH dehydrogenase subunit 4 [Leiocassis longirostris] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++G D +S L+VLT +L P IL+S ++ R Y+ L+ +I AF + Sbjct: 54 NLYMGTDPLSTPLLVLTCWLLPLMILASQNHVKTEPINRQRTYITLLTSLQMFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLSAGTYFLFYTLTGSLPLLVALLLLHTDVG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMMTIQYSQ--PMNLHTWGDKIWWAGCLIAFLVKMPLYGIHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R ++ L PL+ P+I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGMMRMMIILDPLSKDLVYPIIA-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGALVLMIAHGLVSSALFCLANTTYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 ILFPLAATWWFIANLANLALPPLPNLMGELMIITTMFNWSPWTLILTGAGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L+ RE ++ Sbjct: 411 LFLMTQRG-PLPQHIINLQPFHTREHLLM 438 >gi|302633033|gb|ADL59809.1| NADH dehydrogenase subunit 4 [Misgurnus anguillicaudatus] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 +Y++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NYYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLALHSWGHMFWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTTYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I S+F S +L G +++A YSL+ Sbjct: 351 MIFPLTATWWFIANLANLALPPLPNLMGELTIISSLFNWSPWTILLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTP-SHITGLPPFHTREHLLL 438 >gi|13116550|ref|NP_076865.1| NADH dehydrogenase subunit 4 [Aulopus japonicus] gi|12964657|dbj|BAB32685.1| NADH dehydrogenase subunit 4 [Aulopus japonicus] Length = 460 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 209/363 (57%), Gaps = 14/363 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 + +LG D +S L+VLT +L P IL+S + R Y+ + L++ +I AF + Sbjct: 54 NLYLGTDPLSTPLLVLTCWLLPLMILASQNHLFVEPANRQRTYISLLVTLQTCLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+L+P II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEILMFYVMFEATLVPTLFIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLML--QND 171 Query: 191 TSSIIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T ++ L P S+ ++W W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLTLQFSDPLSLLTPGGKFW-WLACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG IR +L L PL+ + P I L+L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMIRIMLILDPLSKELAYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAGGILIQTPWGLTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + +AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QMVLPLMTSWWFLANLANLALPPLPNLMGELMIITSLFNWSYWSIILTGAGTLITASYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|6648670|gb|AAF21288.1| NADH ubiquinone oxidoreductase subunit 4 [Pseudogyrinocheilus prochilus] Length = 460 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRSYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLQLSSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHITGLHPFHTREHLLM 438 >gi|262211492|gb|ACY35580.1| NADH dehydrogenase subunit 4 [Carassius auratus auratus] Length = 460 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLSSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|538450|gb|AAA67378.1| presumptive protein 4 [Sceloporus grammicus] Length = 461 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 197/364 (54%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + L +D IS L+ L+ +L P + +S ++ R +++ +L++++I F Sbjct: 52 FSTTQLMIDPISAPLLALSCWLLPLMVPASQNHLKSEPLHRKRMFLMTLSILQTLLILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + + LFYI FEA+LIP +II WG +ER+ A F YT S+ +L AI+ + Sbjct: 112 AATNFTLFYIMFEATLIPTLIIITRWGNQAERLTAGTYFLFYTLASSLPLLIAILYFNTK 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 SSI+ L P W MW A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 NHHSSIMLLQLTQ--PQLTNTWSNVFMWAACLLAFMVKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L P+ + + P + L+L I+ S + M QTD+K LIA Sbjct: 230 MVLAAILLKLGGYGIMRITTSLMPMTPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GAM M++HGL SS LF Y+R HTR + G Sbjct: 289 YSSVSHMGLVVAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 P + ++ + NM LP + +GE L+I+S+F SN +L G +++A YS Sbjct: 349 FQIIFPLMSTWWLLANLTNMALPPSINLMGELLIIVSLFNWSNPTILLTGLGTLITAAYS 408 Query: 425 LWLY 428 L ++ Sbjct: 409 LHMF 412 >gi|310788854|gb|ADP24430.1| NADH dehydrogenase subunit 4 [Labiobarbus lineatus] Length = 460 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|217331602|gb|ACK38324.1| NADH dehydrogenase subunit 4 [Protohynobius puxiongensis] Length = 459 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 211/366 (57%), Gaps = 16/366 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 + ++G+D +S L++LT +L P IL+S ++ N R Y+ ++L++ +I AF Sbjct: 51 LVNKYMGLDPLSSPLLILTCWLLPMMILASQNHLKNNPENRQRLYITMMIILQTSLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M+LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 111 SATEMILFYITFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLIL--- 167 Query: 189 KKTSSIIDLYAMSK------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + TS + + + FS + W W+A +F +K+P++ H WLP AHV+AP A Sbjct: 168 QNTSGSLSFFLLELARPVQLMAFSDKIW-WVACLLAFMVKMPLYGMHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L PL + P I L+L +I ++ M QTD+K L Sbjct: 227 GSMILAAVLLKLGGYGIMRISIMLTPLYKELSYPFII-LALWGVIMTGMICMRQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V GA M+SHGL+SSALF + Y+R H+R + Sbjct: 286 IAYSSVSHMGLVISATLIQTPWSFSGATILMISHGLISSALFCLANMNYERTHSRTLLLM 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G +P A ++ ++NM LP + GE +++S+F SN ++ G +++A Sbjct: 346 RGAQTMLPLMATWWLLINLSNMALPPSLNLWGELTIMISLFNWSNWTILITGVGALITAS 405 Query: 423 YSLWLY 428 Y+L+++ Sbjct: 406 YTLYMF 411 >gi|270267546|ref|YP_003331232.1| NADH dehydrogenase subunit 4 [Eothenomys chinensis] gi|215882407|gb|ACJ70829.1| NADH dehydrogenase subunit 4 [Eothenomys chinensis] Length = 459 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 136/400 (34%), Positives = 217/400 (54%), Gaps = 15/400 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDML 135 D +S L+VLTT+L P +L+S +++ N + Y+ + L+ ++I F + +++ Sbjct: 57 SADPLSAPLLVLTTWLLPLMLLASQNHMKKEHEYNKKLYISLLVTLQILLIMTFSANELI 116 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FY+ FEA+LIP +II WG +ER+ A F YT GSI +L A++ + + ++ Sbjct: 117 MFYVLFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALIYI---QNSTGT 173 Query: 195 IDLYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 ++ MS SI Q W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 LNFILMSLNYLSISQTWSNNILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG +R + L P+ P I LSL +I S + + QTD+K LIAYSS++ Sbjct: 234 ILLKLGGYGMMRISMILDPVTKSMAYPFIL-LSLWGMIMTSSICLRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HM V I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 293 HMALVIAAIMIQTPWSFMGATALMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMVF 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A ++ ++AN+ LP T IGE ++ S+F SN +L +++++LYS+++ Sbjct: 353 PLMATWWIMASLANLALPPTINLIGELMITTSLFSWSNPSIILLGTNILITSLYSIYMIV 412 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 G + L+ RE ++ + + I P Sbjct: 413 TTQRG-KLTNHMNNLQPSHTRESTLMALHIIPLILLSINP 451 >gi|25057182|ref|NP_739837.1| NADH dehydrogenase subunit 4 [Gambusia affinis] gi|25005757|dbj|BAC23394.1| NADH dehydrogenase subunit 4 [Gambusia affinis] Length = 461 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 206/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAF 129 F + + D IS L+VLT +L P IL+S + N + I+ L+ L+ +I AF Sbjct: 52 FLNCFMASDPISTPLLVLTCWLLPLMILASQNHLMLEPTNRQRTFISLLISLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M Sbjct: 112 SATELILFYIMFEATLIPTLLIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLMMQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S + L +S P ++ ++W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSFLTLPYLSLIPAHDWAHKFW-WTACLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG IR L+ P + P I L+L ++ + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMIRILIIFAPSTKELSYPFII-LALWGVVMTGSICLRQTDLKALIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V I GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAAILIQTPWAFTGALVLMIAHGLTSSALFCLANTNYERSHSRTMLLVRGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A+ T+AN+ LP +GE ++I S+F S +L G+ ++A YSL Sbjct: 350 QTLLPLTALWWFTATLANLALPPLPNLMGELMIITSLFNWSMWTLILTGLGMTITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|300507610|dbj|BAJ11222.1| NADH dehydrogenase subunit-4 [Misgurnus anguillicaudatus] Length = 460 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 +Y+L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NYYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLHSWGHMFWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTTYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTATWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGVGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTP-PHITGLPPFHTREHLLL 438 >gi|262211506|gb|ACY35593.1| NADH dehydrogenase subunit 4 [Carassius auratus auratus] Length = 460 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLSSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|312233447|ref|YP_004021848.1| NADH dehydrogenase subunit 4 [Cervus eldi] gi|308277997|gb|ADO27633.1| NADH dehydrogenase subunit 4 [Cervus eldi] Length = 459 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 205/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|296905349|gb|ADH84039.1| NADH dehydrogenase subunit 4 [Sinogastromyzon sichangensis] Length = 460 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPITRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIILFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLALNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTTYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIMLTGVGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPAP-NHIVALPPFHTREHLLM 438 >gi|84488688|ref|YP_448890.1| NADH dehydrogenase subunit 4 [Testudo kleinmanni] gi|67005715|gb|AAY62507.1| NADH dehydrogenase subunit 4 [Testudo kleinmanni] Length = 459 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 132/403 (32%), Positives = 217/403 (53%), Gaps = 17/403 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F +++LGVD IS L++L+ +LTP IL+S + R +M L+ +I AF Sbjct: 51 FSNHYLGVDRISAPLIILSCWLTPLMILASQNHLILEPISRKRTFMATITFLQVSLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE +LIP VII WG ER+ A F YT GS+ +L A+ M + Sbjct: 111 STTELIMFFIAFETTLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSYM--Q 168 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + ++ P + W W A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 AQNGTLFTHTMQLNQPTMMTSWAHSMWWFALLTAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L PL+ P + ++L +I S + + QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGIIRIMPTLNPLSKTLSYPFMA-MALWGVIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 288 YSSVSHMGLVIAAALTQTQWSYTGAITLMIAHGLTSSMLFCLANTNYERTHSRMLLLTQN 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ ++ NM LP T +GE +I+S+F SN ++ G +++A Y+ Sbjct: 348 MQLLLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGTLITATYT 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 L++ +G + ++ + RE + + P+ +LT+ Sbjct: 408 LYMLITTQWGETP-SYMKTIPPTHTREHLLMMLHILPMILLTM 449 >gi|28881923|ref|NP_795764.1| NADH dehydrogenase subunit 4 [Esox lucius] gi|28804880|dbj|BAC58169.1| NADH dehydrogenase subunit 4 [Esox lucius] Length = 460 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 137/367 (37%), Positives = 207/367 (56%), Gaps = 10/367 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L +D +S L VLT +L P I++S + R Y+ + L+ +I AF + Sbjct: 54 NLYLALDPLSFPLAVLTCWLVPLMIIASQNHVAHEPLTRQRTYISLLVSLQVFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +D+L FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 114 MDILTFYVMFEATLIPTLIIITRWGSQTERLSAGTYFMFYTLLGSLPLLVALLYLLNDTG 173 Query: 191 TSSIIDL-YAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S+ L Y P ++ W W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMHTLQYIQMTNPDTLGTMLW-WVACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVVLGPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVASGILIQTPWGFTGAIILMVAHGLASSALFCLANTSYERTHSRTMLLTRGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + +AN+ LP +GE ++I+SVF S+ +L G +++A YSL L Sbjct: 352 ILPLMAAWWFLANLANLALPPLPNLMGELMIIVSVFNWSSWTILLTGLGTLITASYSLHL 411 Query: 428 YRKVVFG 434 + G Sbjct: 412 FLTTQRG 418 >gi|229002662|dbj|BAH57767.1| NADH dehydrogenase subunit 4 [Carassius auratus] Length = 460 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LVSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|187373178|ref|YP_001876465.1| NADH dehydrogenase subunit 4 [Cobitis choii] gi|162423291|gb|ABX89431.1| NADH dehydrogenase subunit 4 [Cobitis choii] gi|186968875|gb|ACC97199.1| NADH dehydrogenase subunit 4 [Cobitis choii] Length = 460 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NQYMATDLLSTPLLVLTCWLLPLMILASQNHINPEPVNRQRLYITLLVFLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLNTWGHKIWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMVAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G S + L RE ++ Sbjct: 411 LFLMTQRGPSPTH-ITGLPPFHTREHLLM 438 >gi|41688053|dbj|BAD08611.1| NADH dehydrogenase subunit-4 [Carpiodes carpio] gi|119225495|dbj|BAF41840.1| NADH dehydrogenase subunit 4 [Carpiodes carpio] gi|260766547|gb|ACX50296.1| NADH dehydrogenase subunit 4 [Carpiodes velifer] Length = 460 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 STYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEMIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P +++ + W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLALESYGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILVQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFVANLANLALPPLPNLMGELMIITTMFNWSPWTIALTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPAP-NHIMGLPPFHTREHLLM 438 >gi|295641239|gb|ADG22777.1| NADH dehydrogenase subunit 4 [Arctonyx collaris] Length = 459 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 208/389 (53%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 VD +S L+VLTT+L P +++S + + + Y+ ++L+ +I F + ++++ Sbjct: 58 VDSLSAPLLVLTTWLLPLMLMASQHHLSKETLTRKKLYITMLVMLQMFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALL---WAQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L M QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NLLMM-------QYWAQPLLNSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL + P + LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITVLLNPLTNLMAYPFMM-LSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GAM M++HGL SS LF Y+R H+R + Sbjct: 287 AYSSVSHMALVIMAVLIQSPWSYMGAMALMIAHGLTSSMLFCLANSNYERTHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A + ++ N+ LP T +GE V+M+ F SN +L + ++ALY Sbjct: 347 GLQTLLPLMAAWWLFASLTNLALPPTINLVGELFVVMASFSWSNITIILMGINITITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G ++ +K RE Sbjct: 407 SLYMLITTQRG-KYTHHIKNIKPSFTREN 434 >gi|299823728|ref|YP_003734659.1| NADH dehydrogenase subunit 4 [Pellona flavipinnis] gi|299758135|dbj|BAJ09978.1| NADH dehydrogenase subunit 4 [Pellona flavipinnis] Length = 460 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 204/366 (55%), Gaps = 12/366 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L++LT +L P IL+S IQ R Y+ + L++++I AF + + Sbjct: 56 YMAIDPLSAPLLILTCWLLPLMILASQNHIQTEPLLRQRTYISLLISLQALLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLMGSLPLLVALLAL--QNSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMITLNYNQPLTLNSWGHKMWWTGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRMTPILDPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGLTGAIILMIAHGLASSALFCLANTSYERTHSRTMILARGLQTL 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTATWWFIANLANLALPPLPNLMGEIMIITTLFNWSPWTLILTGLGTLITAGYSLYMF 412 Query: 429 RKVVFG 434 G Sbjct: 413 LTTQRG 418 >gi|289183300|ref|YP_003457277.1| NADH dehydrogenase subunit 4 [Holothuria forskali] gi|288995587|emb|CBH40186.1| NADH dehydrogenase subunit 4 [Holothuria forskali] Length = 454 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 139/384 (36%), Positives = 217/384 (56%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI----GAFLSLDMLLF 137 D +S L+VL+ +L P C+L+ +++ N FLVL S++I F SL++L F Sbjct: 57 DSLSSPLIVLSCWLAPLCLLAQ-NNLKVNTPLLQNNFLVLVSIIIFFLILTFSSLNILSF 115 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 +I FEA+LIP ++I WG + ERI A F YT FGS+ +L +I+++ +++ Sbjct: 116 FICFEATLIPTLILITRWGANMERIQAGIYFLFYTLFGSLPLLVSILILN-SSNNTTMFP 174 Query: 197 LYAMSKFP----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +MS+ FSI+ W W+ +F IK+P++ FH WLP AHV+AP AGS+ LA I+L Sbjct: 175 LSSMSELNPQSLFSIELW-WLITILAFLIKMPIYGFHLWLPKAHVEAPVAGSMILAAILL 233 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG IR LL FP + +I F ++I S++ + QTD+K LIAYSS+ HM Sbjct: 234 KLGGYGLIRMLLA-FPNVLIPNSVLIVFCCWGSLI-TSIICLRQTDLKALIAYSSVGHMS 291 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V G G + GA+ M++HGLVSSALF ++Y+R TR++F G Sbjct: 292 LVAAGTILGTYWSISGALILMIAHGLVSSALFGLANILYERTQTRNMFITRGFKTLTALL 351 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + ++ AN+GLP IGE ++I + S + + V A+YSL +++ Sbjct: 352 PIWWLLACAANLGLPPLPNLIGEIMIISGLISWSPFLLPVLGLTTVFGAIYSLSIFQNAN 411 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY 456 ++ + + +++ RE MV+ Sbjct: 412 TQLNPSRNI-KFSNINPREHLMVF 434 >gi|299758227|dbj|BAJ09998.1| NADH dehydrogenase subunit 4 [Setipinna melanochir] Length = 460 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 138/400 (34%), Positives = 217/400 (54%), Gaps = 19/400 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L +D +S L+VLT +L P IL+S Q R Y+ L++ +I AF + + Sbjct: 56 YLAIDPLSSPLLVLTCWLLPLMILASQNHAQTEPTSRQRTYISLLASLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T+ Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLAL---QTTT 172 Query: 193 SIIDLYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + + +S P ++ W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 GSLSMITLSFNQPLNLLSWGDKLWWTACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L PL P I L+L I+ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRITPILDPLTKDMAYPFII-LALWGIVMTGTICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI + G+ GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVASGILTQTPWGITGAIILMIAHGLTSSALFCLANTNYERTHSRTMALARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL++ Sbjct: 352 LFPLTATWWFIANLANLALPPLPNLMGEMMIITTMFNWSPWSVILTGLGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + L RE ++ PI +LT+ Sbjct: 412 FLMTQRGQTPTH-ITALPPYHTREHLLITLHLIPIILLTM 450 >gi|327492901|ref|YP_004347858.1| NADH dehydrogenase subunit 4 [Phoxinus percnurus sachalinensis] gi|327396779|dbj|BAK14196.1| NADH dehydrogenase subunit 4 [Phoxinus percnurus sachalinensis] Length = 460 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L+ ++ AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYIMLLTSLQVFLVMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P S+ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLIIQYTQPLSLHTWSHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILVQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMVLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPTH-IMKLPPFHTREHLLM 438 >gi|52220993|ref|YP_087091.1| NADH dehydrogenase subunit 4 [Bubalus bubalis] gi|51173191|gb|AAT97423.1| NADH dehydrogenase subunit 4 [Bubalus bubalis] Length = 459 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 134/394 (34%), Positives = 216/394 (54%), Gaps = 35/394 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALVYI---QSTMGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWTQPMSNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLLLNPV-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE LV+MS F SNT +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELLVVMSTFSWSNTTIILMGANMVITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLS---LRERCMV 455 L++ + + + + ++S RE ++ Sbjct: 408 LYM----LIMTQRGKHTHHINNISPSFTRENALM 437 >gi|262399673|gb|ACY65631.1| NADH dehydrogenase subunit 4 [Martes pennanti] gi|262399687|gb|ACY65644.1| NADH dehydrogenase subunit 4 [Martes pennanti] gi|262399701|gb|ACY65657.1| NADH dehydrogenase subunit 4 [Martes pennanti] gi|262399715|gb|ACY65670.1| NADH dehydrogenase subunit 4 [Martes pennanti] gi|262399729|gb|ACY65683.1| NADH dehydrogenase subunit 4 [Martes pennanti] gi|262399743|gb|ACY65696.1| NADH dehydrogenase subunit 4 [Martes pennanti] gi|262399757|gb|ACY65709.1| NADH dehydrogenase subunit 4 [Martes pennanti] gi|262399785|gb|ACY65735.1| NADH dehydrogenase subunit 4 [Martes pennanti] gi|262399799|gb|ACY65748.1| NADH dehydrogenase subunit 4 [Martes pennanti] gi|319656089|gb|ADV58508.1| NADH dehydrogenase subunit 4 [Martes pennanti] gi|319656103|gb|ADV58521.1| NADH dehydrogenase subunit 4 [Martes pennanti] gi|319656117|gb|ADV58534.1| NADH dehydrogenase subunit 4 [Martes pennanti] gi|319656131|gb|ADV58547.1| NADH dehydrogenase subunit 4 [Martes pennanti] gi|319656145|gb|ADV58560.1| NADH dehydrogenase subunit 4 [Martes pennanti] Length = 458 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 206/389 (52%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P +++S + + + Y+ L+ +I F + ++++ Sbjct: 58 TDSLSAPLLVLTTWLLPLMLVASQHHLSKETLTRKKLYITMLTTLQLFLIMTFTASELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALL---WMQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NLLV-------IQYWAQPLLDSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL + Y A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITILLNPL-TNYMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+M+ F SN ++ + L+ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNLTIIMMGINITLTALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G V+ +K RE Sbjct: 407 SLYMLITTQRG-KHTHHVKNIKPSFTREN 434 >gi|5835536|ref|NP_007558.1|ND4_13726 NADH dehydrogenase subunit 4 [Oryctolagus cuniculus] gi|6093572|sp|O79436|NU4M_RABIT RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|3293016|emb|CAA04856.1| NADH dehydrogenase subunit 4 [Oryctolagus cuniculus] Length = 459 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 206/363 (56%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF---REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LTT+L P IL+S + + ++ I+ L+ L+ ++ F + + +LF Sbjct: 59 DALSTPLLMLTTWLLPLMILASQHHLDKETLTRKKIYISLLISLQVFLVMTFSATEFILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLMGSLPLLVALIYLQNSMGSLNFLL 178 Query: 197 LYAMSKFPFSIQY-W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L M+K SI W MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 179 LQLMNK---SITTSWSNSLMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ + Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITILLSPI-TDYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSLLFCLANSNYERIHSRTMLLARGLQTILPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A +V ++ N+ LP T +GE L+IM+ F SN +L V+++ALYSL++ Sbjct: 355 MAAWWLVASLTNLALPPTINLLGELLIIMASFSWSNLTIILMGTNVLITALYSLYMLSTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|12583921|gb|AAG59679.1| NADH dehydrogenase subunit 4 [Muntiacus feae] Length = 459 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 204/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLARKKLYITMLILLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 Y+ FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YMLFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + Y M P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LVLQYWMQPLPNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSIVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T +GE V+MS F SN +L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLVGELFVVMSSFSWSNITIILMGLNMVITALYSLYM 410 >gi|237869066|ref|YP_002907396.1| NADH dehydrogenase subunit 4 [Gymnarchus niloticus] gi|237648931|dbj|BAH59022.1| NADH dehydrogenase subunit 4 [Gymnarchus niloticus] gi|317176477|dbj|BAJ54294.1| NADH dehydrogenase subunit 4 [Gymnarchus niloticus] Length = 460 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 136/374 (36%), Positives = 214/374 (57%), Gaps = 10/374 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLS 131 + +L D +S L+VLT +L P I++S I EN + I+ L+ L++ +I AF + Sbjct: 54 NEYLATDLLSTPLLVLTCWLLPLMIMASQNHISTEPENRQRTYISLLISLQTFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLALITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKDTG 173 Query: 191 T-SSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S +I Y + +S + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLITQYNPTTTTSSWSHKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLNPLSKEMAYPFII-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSS+LF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGIMIQTPWGFTGAITLMIAHGLVSSSLFCLANTNYERTHSRTLLLARGLQT 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + +AN+ LP +GE ++I S+F SN +L G +++A YSL++ Sbjct: 352 ILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSNWTIILTGTGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKV 441 + G S + Sbjct: 412 FLMTQRGHSPPHTI 425 >gi|44894105|gb|AAS48607.1| NADH dehydrogenase subunit 4 [Bubalus bubalis] Length = 459 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 205/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALVYI---QSTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWAQPMSNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLLLNPV-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE LV+MS F SNT +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELLVVMSTFSWSNTTIILMGANMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|84579709|dbj|BAE72286.1| NADH dehydrogenase subunit 4 [Oryzias latipes] Length = 460 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 135/357 (37%), Positives = 205/357 (57%), Gaps = 14/357 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K + E N + I+ LV L+ +I AF + +M Sbjct: 57 IATDPLSTPLLVLTCWLLPLMILASQKHMAEEPVNRQRTYISLLVSLQIFLILAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLSAGIYFLFYTLAGSLPLLVALLLL--QSSTGS 174 Query: 194 IIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + L P + + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSFLTTQFLPPLQLHTEASKLW-WVGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G G++ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGILIQTPWGFTGSLILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQVV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + T+AN+ LP +GE ++I S+F SN +L G +++A YSL Sbjct: 353 LPLLATWWFLLTLANLALPPLPNLMGELMIITSLFNWSNWTLLLTGAGTLITASYSL 409 >gi|116014306|ref|YP_788152.1| NADH dehydrogenase subunit 4 [Cervus nippon taiouanus] gi|115531530|gb|ABJ09689.1| NADH dehydrogenase subunit 4 [Cervus nippon taiouanus] Length = 459 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 205/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLINLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|262399771|gb|ACY65722.1| NADH dehydrogenase subunit 4 [Martes pennanti] Length = 458 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 206/389 (52%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P +++S + + + Y+ L+ +I F + ++++ Sbjct: 58 TDSLSAPLLVLTTWLLPLMLVASQHHLSKETLTRKKLYITMLTTLQLFLIMTFTASELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALL---WMQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NLLV-------IQYWAQPLLDSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL + Y A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITILLNPL-TNYMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+M+ F SN ++ + L+ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNLTIIMMGINITLTALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G V+ +K RE Sbjct: 407 SLYMLITTQRG-KHTHHVKNIKPSFTREN 434 >gi|299825770|ref|YP_003734698.1| NADH dehydrogenase subunit 4 [Coilia lindmani] gi|299758163|dbj|BAJ09984.1| NADH dehydrogenase subunit 4 [Coilia lindmani] Length = 460 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 139/400 (34%), Positives = 217/400 (54%), Gaps = 19/400 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S Q R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSSPLLVLTCWLLPLMILASQNHTQAEPISRQRTYISLLASLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T+ Sbjct: 116 MIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLAL---QTTT 172 Query: 193 SIIDLYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + + ++ P S+ W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 GGLSMITLNFNQPLSLVSWGDKLWWTACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L PL P I L+L I+ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRITPILDPLTKDMAYPFII-LALWGIVMTGTICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI + G+ GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVASGILTQTPWGMTGAIILMIAHGLTSSALFCLANTSYERTHSRTMALARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A + +AN+ LP +GE ++I ++F S VL G +++A YSL++ Sbjct: 352 LFPLTATWWFIANLANLALPPLPNLMGEMMIITTMFNWSPWSIVLTGLGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + L RE ++ PI +LT+ Sbjct: 412 FLMTQRGQTPTH-ITALPPYHTREHLLITLHLIPIILLTI 450 >gi|2829027|gb|AAD10067.1| NADH ubiquinone oxidoreductase subunit 4 [Distoechodon tumirostris] Length = 460 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+GLP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLGLPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|25057166|ref|NP_739824.1| NADH dehydrogenase subunit 4 [Oryzias latipes] gi|25005743|dbj|BAC23848.1| NADH dehydrogenase subunit 4 [Oryzias latipes] Length = 460 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 135/356 (37%), Positives = 205/356 (57%), Gaps = 14/356 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDML 135 D +S L+VLT +L P IL+S + + N + I+ LV L+ ++ AF + +M+ Sbjct: 58 ATDPLSTPLLVLTCWLLPLMILASQNHMAKEPINRQRTYISLLVSLQIFLVLAFGATEMI 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S+ Sbjct: 118 MFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL--QNSTGSL 175 Query: 195 IDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 L P + ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SFLTTQFFPPLQLHTEASKFW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAAGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P A +FT+AN+ LP +GE ++I S+F SN +L G +++A YSL Sbjct: 354 PLLATWWFLFTLANLALPPLPNLMGELMIITSLFNWSNWTLLLTGAGTLITASYSL 409 >gi|164519175|ref|YP_001648886.1| NADH dehydrogenase subunit 4 [Xyrauchen texanus] gi|160426373|gb|ABX40024.1| NADH dehydrogenase subunit 4 [Xyrauchen texanus] Length = 460 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 208/362 (57%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I N + I+ LV L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVNRQRLYISLLVSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ + P +++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMMILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL+SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLISSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV +AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFAANLANLALPPLPNLMGELMIITSLFSWSPWTIALTGVGTLITAGYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|107991111|ref|YP_626643.1| NADH dehydrogenase subunit 4 [Hynobius formosanus] gi|51891126|gb|AAU12947.1| NADH dehydrogenase subunit 4 [Hynobius formosanus] gi|84371613|gb|ABC56056.1| NADH dehydrogenase subunit 4 [Hynobius formosanus] Length = 459 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 213/361 (59%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +LG+D +S L++LT +L P IL+S ++ N R Y+ ++L++ +I AF + Sbjct: 53 NKYLGLDPLSSPLLILTCWLLPMMILASQNHLKNNPENRQRMYISMMIILQASLILAFSA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 113 TEIIMFYITFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLILQNYSG 172 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S+ L M+ +S + W W+A +F IK+P++ H WLP AHV+AP AGS+ L Sbjct: 173 SLSLFLLELMNPMQLTLYSDKIW-WMACLLAFMIKMPLYGLHLWLPKAHVEAPIAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL+ + P I L+L +I ++ M QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGILRISIMLTPLSKELSYPFII-LALWGVIMTGMICMRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 291 VSHMGLVIAAALIQTPWSLSGAIILMISHGLISSALFCLANMNYERTHSRTLLLMRGAQM 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++NM LP + GE +++S+F SN ++ G +++A Y+L++ Sbjct: 351 MLPLMATWWLLINLSNMALPPSLNLWGELTIMVSLFNWSNWTILITGIGTLITASYTLYM 410 Query: 428 Y 428 + Sbjct: 411 F 411 >gi|62184391|ref|YP_220702.1| NADH dehydrogenase subunit 4 [Mystacina tuberculata] gi|61660113|gb|AAX50186.1| NADH dehydrogenase subunit 4 [Mystacina tuberculata] Length = 459 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 136/403 (33%), Positives = 217/403 (53%), Gaps = 33/403 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S K Q + Y+ ++L+ ++ F + +++LF Sbjct: 59 DSLSTPLLMLTTWLLPLMIIASQFHLAKESQTRKKLYITMLVLLQIFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WGG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGGQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 IMGSLNF-LLMQYWAEPLPTSWSSTLMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITTVLCPL-TEFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V++S F SN +L ++++ALYS Sbjct: 348 LQTILPLMAAWWLLASLTNLALPPTINLIGELFVVVSTFSWSNLSIILMGLNIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 L++ G + +K RE + ++P+ +L++ Sbjct: 408 LYMLIMTQRG-KYTYHINNIKPSYTRENTLMAMHMFPLLLLSI 449 >gi|6648664|gb|AAF21284.1| NADH ubiquinone oxidoreductase subunit 4 [Sinocyclocheilus tingi] Length = 460 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL++ I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILATQNHINPEPINRQRSYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP +GSV LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVSGSVVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMTMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGILIQTSWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAMWWFTANLANLALPPLPNLMGELMIITTLFSWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|229324813|ref|YP_002860193.1| NADH dehydrogenase subunit 4 [Acipenser sinensis] gi|189164326|gb|ACD77273.1| NADH dehydrogenase subunit 4 [Acipenser sinensis] Length = 460 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 136/359 (37%), Positives = 207/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S I R Y+ + L+ +I AF + + Sbjct: 56 YLGTDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRTYITLLVSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E + Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKELGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M P ++ + W W A +F +K+ ++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIILYMQPAPLCTWADKIW-WAACLIAFLVKMHLYGAHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L P + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMIIMLEPTSKNLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+RLH+R + G+ + Sbjct: 294 HMGLVVAGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERLHSRTLLLARGMQAVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I S+F SN +L G +++A YSL++Y Sbjct: 354 PLMATWWFIANLANLALPPLPNLMGELVIITSMFNWSNWTIILTGGGTLITASYSLYMY 412 >gi|119360605|ref|YP_913532.1| NADH dehydrogenase subunit 4 [Pelecus cultratus] gi|119225229|dbj|BAF41593.1| ND4 [Pelecus cultratus] Length = 460 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 139/389 (35%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 SSYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYAQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 VVFPLTAVWWFVANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + V +L RE ++ Sbjct: 411 MFLMSQRGPTP-SHVMKLPPFHTREHLLM 438 >gi|317097118|ref|YP_004123252.1| NADH dehydrogenase subunit 4 [Pelteobagrus nitidus] gi|302201435|gb|ADL09004.1| NADH dehydrogenase subunit 4 [Pelteobagrus nitidus] Length = 460 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 134/389 (34%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++G D +S L+VLT +L P IL+S ++ R Y+ L+ +I AF + Sbjct: 54 NLYMGTDPLSTPLLVLTCWLLPLMILASQNHVKTEPINRQRTYITLLTSLQMFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLSAGTYFLFYTLTGSLPLLVALLLLHTDVG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMMTIQYSQ--PMNLHTWGDKIWWAGCLIAFLVKMPLYGIHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R ++ L PL+ P+I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGMMRMMIILDPLSKDLVYPIIA-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGALVLMIAHGLVSSALFCLANTTYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE ++I ++F S ++ G +++A YSL+ Sbjct: 351 IIFPLTATWWFIANLANLALPPLPNLMGELMIITTMFNWSPWTLIMTGAGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L+ RE ++ Sbjct: 411 LFLMTQRG-PLPQHIINLQPFHTREHLLM 438 >gi|25057590|ref|NP_739772.1| NADH dehydrogenase subunit 4 [Caulophryne pelagica] gi|25005687|dbj|BAC23342.1| NADH dehydrogenase subunit 4 [Caulophryne jordani] Length = 460 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 138/397 (34%), Positives = 218/397 (54%), Gaps = 10/397 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT ++ P I++S + R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSSPLLVLTCWIQPLAIIASQNHMAAEPLVRQRMYLALLASLQLFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEVLMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDL-YAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L Y+ P ++ + W W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSNPATPDAYATKLW-WVGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG IR L+ L PL + P + L+L ++ AS V + QTD+K LIAYSS Sbjct: 233 AAILLKLGGYGMIRVLIVLDPLTKELCYPFVV-LALWGVLMASSVCLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI + G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVAAGILTQTPWGFTGALVLMIAHGLTSSALFCLANTNYERTHSRTMILARGMQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 MP A + +AN+ LP +GE L++ S+F S L G +++A YSL++ Sbjct: 352 LMPLMASWWFIACLANLALPPLPNLMGELLILTSLFSWSPWTIALTGAGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + G + + + M +A LT+ Sbjct: 412 FLMTQRGPTPTHLLALEPSHTREHLLMALHLAPLTLL 448 >gi|256985374|ref|YP_003162807.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus altishoulderus] gi|229501350|gb|ACQ73875.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus altishoulderus] Length = 460 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRSYIMLLASLQTFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLQLSSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTTYERTHSRTMMLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P V +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTTVWWFTANLANLALPPLPNLMGELMIITTLFSWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-SHIMGLQPFHTREHLLM 438 >gi|38707530|ref|NP_944629.1| NADH dehydrogenase subunit 4 [Caperea marginata] gi|38602441|emb|CAD87906.1| NADH4 protein [Caperea marginata] Length = 459 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 204/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +E+ + Y+ +VL++++I F + +++LF Sbjct: 59 DPLSTPLLILTMWLLPLMLMASQSHLLKESLTRKKLYVTMLIVLQTLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T S+ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALTYL--QNTTGSLNF 176 Query: 195 --IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + + P +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LLLQHWTQPLSPTWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITFMLDPL-TEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL ++P Sbjct: 296 LVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRIMILARGLQISLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE L +MS+F SN L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELLTVMSIFSWSNPTIFLMGTNIVITALYSLYM 410 >gi|38638393|ref|NP_943743.1| NADH dehydrogenase subunit 4 [Carpiodes carpio] gi|34013862|gb|AAQ56089.1| NADH dehydrogenase subunit 4 [Carpiodes carpio] Length = 460 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 STYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEMIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P +++ + W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLALESYGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFVANLANLALPPLPNLMGELMIITTMFNWSPWTIALTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPAP-NHIMGLPPFHTREHLLM 438 >gi|256427149|ref|YP_003126923.1| NADH dehydrogenase subunit 4 [Platax orbicularis] gi|256353301|dbj|BAH97814.1| NADH dehydrogenase subunit 4 [Platax orbicularis] Length = 460 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 203/364 (55%), Gaps = 10/364 (2%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGA 128 YF H+ D +S L++LT +L P IL+S R Y+ L+ +I A Sbjct: 51 YFLGPHMATDPLSTPLLILTCWLLPLMILASQNHTALEPINRQRTYITLLTSLQIFLIMA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 111 FTATELIMFYVMFEATLIPTLFLITRWGNQAERLNAGIYFLFYTLAGSLPLLVALLLLQN 170 Query: 188 EKKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T S++ + + FP F+ + W W +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 NAGTLSLLTIQYSNPFPLLTFADKIW-WAGCLLAFLVKMPLYGLHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR L L P + P I F +L ++ + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMIRMLTILEPATKELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVVGGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A + ++AN+ LP +GE ++I S+F S L G +++A YS Sbjct: 349 LQMALPLMASWWFIASLANLALPPLPNLMGELMIITSLFNWSWWSIALTGAGTLITASYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|323481943|ref|YP_004237292.1| NADH dehydrogenase subunit 4 [Carassius auratus ssp. 'Pingxiang'] gi|322506157|gb|ADX01613.1| NADH dehydrogenase subunit 4 [Carassius auratus ssp. 'Pingxiang'] Length = 460 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLATLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIITTRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|284794711|ref|YP_003412066.1| NADH dehydrogenase subunit-4 [Mylocheilus caurinus] gi|284507265|dbj|BAI67692.1| NADH dehydrogenase subunit-4 [Mylocheilus caurinus] Length = 460 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L++LT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLILTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSLLVIQYAQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMVLARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITAAYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHIMKLPPFHTREHLLM 438 >gi|139935980|ref|YP_001129525.1| NADH dehydrogenase subunit 4 [Hynobius arisanensis] gi|126565110|gb|ABO20780.1| NADH dehydrogenase subunit 4 [Hynobius arisanensis] Length = 459 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 213/361 (59%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +LG+D +S L++LT +L P IL+S ++ N R Y+ ++L++ +I AF + Sbjct: 53 NKYLGLDPLSSPLLILTCWLLPMMILASQNHLKNNPENRQRMYISMMIILQASLILAFSA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 113 TEIIMFYISFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLILQNYSG 172 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S+ L M+ +S + W W+A +F IK+P++ H WLP AHV+AP AGS+ L Sbjct: 173 SLSLFLLELMNPMQLTLYSDKIW-WMACLLAFMIKMPLYGLHLWLPKAHVEAPIAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL+ + P I L+L +I ++ M QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGILRISIMLTPLSKELSYPFII-LALWGVIMTGMICMRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 291 VSHMGLVIAAALIQTPWSLSGAIILMISHGLISSALFCLANMNYERTHSRTLLLMRGAQM 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++NM LP + GE +++S+F SN ++ G +++A Y+L++ Sbjct: 351 MLPLMATWWLLINLSNMALPPSLNLWGELTIMVSLFNWSNWTILITGIGTLITASYTLYM 410 Query: 428 Y 428 + Sbjct: 411 F 411 >gi|215511502|gb|ACJ67949.1| NADH dehydrogenase subunit 4 [Fundulus grandis] Length = 460 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 210/367 (57%), Gaps = 16/367 (4%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGA 128 ++ + ++ D +S L+VLT +L P I++S + EN + I+ L+ L+ +I A Sbjct: 51 FYINNYMAYDPLSSPLLVLTCWLLPLMIIASQNHLAVEPENRQRTYISLLISLQIFLILA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + +M++FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A+++ Sbjct: 111 FSATEMIMFYVMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVALLM--- 167 Query: 188 EKKTSSIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + + +++ P ++ + W W+A +F +K+P++ H WLP AHV+AP Sbjct: 168 YHNSMGSLSYLSLTNLPLTCSDSYADKLW-WMACLLAFLVKMPLYGVHLWLPKAHVEAPI 226 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K Sbjct: 227 AGSMVLAAVLLKLGGYGMMRIMIVLDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKS 285 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R I Sbjct: 286 LIAYSSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTIVL 345 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GL +P A + ++AN+ LP +GE ++I S+F S +L G +++A Sbjct: 346 ARGLQVVLPLMATWWFLASLANLALPPLPNLMGEIMIITSLFNWSFYTLILTGLGTLITA 405 Query: 422 LYSLWLY 428 YSL+++ Sbjct: 406 SYSLYMF 412 >gi|226453458|ref|YP_002726320.1| NADH dehydrogenase subunit 4 [Fundulus grandis] gi|215511488|gb|ACJ67936.1| NADH dehydrogenase subunit 4 [Fundulus grandis] Length = 460 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 210/367 (57%), Gaps = 16/367 (4%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGA 128 ++ + ++ D +S L+VLT +L P I++S + EN + I+ L+ L+ +I A Sbjct: 51 FYINNYMAYDPLSSPLLVLTCWLLPLMIIASQNHLAMEPENRQRTYISLLISLQIFLILA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + +M++FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A+++ Sbjct: 111 FSATEMIMFYVMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVALLM--- 167 Query: 188 EKKTSSIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + + +++ P ++ + W W+A +F +K+P++ H WLP AHV+AP Sbjct: 168 YHNSMGSLSYLSLTNLPLTCSDSYADKLW-WMACLLAFLVKMPLYGVHLWLPKAHVEAPI 226 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K Sbjct: 227 AGSMVLAAVLLKLGGYGMMRIMIVLDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKS 285 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R I Sbjct: 286 LIAYSSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTIVL 345 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GL +P A + ++AN+ LP +GE ++I S+F S +L G +++A Sbjct: 346 ARGLQVVLPLMATWWFLASLANLALPPLPNLMGEIMIITSLFNWSFYTLILTGLGTLITA 405 Query: 422 LYSLWLY 428 YSL+++ Sbjct: 406 SYSLYMF 412 >gi|156186517|gb|ABU55501.1| NADH dehydrogenase subunit 4 [Nipponocypris temminckii] Length = 460 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPIARQRLYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYSQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGMGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + +L RE ++ Sbjct: 411 LFLMSQRGPTPSH-ITKLPPFHTREHLLM 438 >gi|317097353|ref|YP_004123553.1| NADH dehydrogenase subunit 4 [Cynoglossus abbreviatus] gi|254763722|gb|ACT80252.1| NADH dehydrogenase subunit 4 [Cynoglossus abbreviatus] Length = 454 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 212/379 (55%), Gaps = 10/379 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDML 135 +D +S L+VLT +L P IL+S ++ R Y+ + L+ +I AF S +++ Sbjct: 58 AIDTLSTPLLVLTCWLLPLMILASQNHMKTESHARQRLYITLLIFLQLFLIFAFSSTELI 117 Query: 136 LFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FEA+LIP +II WG ER+ A YT S+ +L A++++ + KT S+ Sbjct: 118 MFYIMFEATLIPTLIIITRWGNQLERLSAGTYLLFYTLISSLPLLVALLMI--QTKTGSL 175 Query: 195 IDLYAMSKFPFSIQY-WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 FP Q+ ++W+A F +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 176 SLTSTQFYFPLIPQHNFLWLACFLAFLVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLK 235 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + P+++ P I L+L II L+ + Q D+K LIAYSS+ HMG Sbjct: 236 LGGYGMMRISSMVEPISNNMTYPFIT-LALWGIIMTGLICLQQMDLKSLIAYSSVGHMGL 294 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V GI + G GA+ M++HGL SSALF + Y+R H+R ++ GL P A Sbjct: 295 VVGGIMTQTSWGYSGALILMIAHGLTSSALFCLANINYERTHSRIMYLTRGLQIIFPLMA 354 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 + FT+AN+ LP +GE +I+ +F S + G +++A YSL ++ Sbjct: 355 AWWLSFTLANLALPPLPNMMGELTIIVCMFNWSWWTIIFTGVGTLITAAYSLHMFSTTQR 414 Query: 434 GVSKCEKVQQLKDLSLRER 452 G+ + L ++++E Sbjct: 415 GILP-PHISSLTPMNIKEH 432 >gi|146142367|gb|ABQ01630.1| NADH dehydrogenase subunit 4 [Carassius auratus] Length = 460 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+ LT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLALTCWLLPLMILASQNHINPEPISRQRLYITLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A +++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVAPLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLDSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V G+ G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGVLIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L+ RE ++ Sbjct: 413 PMLQRGPTP-NHITGLQPFHTREHLLM 438 >gi|229002664|dbj|BAH57768.1| NADH dehydrogenase subunit 4 [Carassius auratus] Length = 460 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSLWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|16357454|ref|NP_443316.1|ND4_15814 NADH dehydrogenase subunit 4 [Trachipterus trachypterus] gi|16266955|dbj|BAB70114.1| NADH dehydrogenase subunit 4 [Trachipterus trachypterus] Length = 460 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 135/391 (34%), Positives = 217/391 (55%), Gaps = 18/391 (4%) Query: 50 FVWSVFDKGRSSFQMIEYYHWIDY-------FCSYHLGVDGISILLVVLTTFLTPFCILS 102 +VW++ G++ + + W + + +L VD +S L++LT +L P +L+ Sbjct: 22 WVWTI-TLGQTMLIALASFMWFNLPSETGWTMANPYLAVDALSSPLLILTCWLLPLMVLA 80 Query: 103 SWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG- 157 S ++ R ++ + L+ ++I AF + +++LFYI FEA+LIP +II WG Sbjct: 81 SQNHLKSEPAVRQRTFLSLLVSLQILLIMAFSATELILFYIMFEATLIPTLLIITRWGNQ 140 Query: 158 SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL---YAMSKFPFSIQYWMWIA 214 +ER+ A F YT GS+ +L A++++ + T S++ L M+ P W W A Sbjct: 141 AERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTLSMLTLPYSKPMAFTPLGGSIW-WTA 199 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG IR ++ L P++ Sbjct: 200 CLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMIRIMVILEPVSKNLV 259 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P I F +L ++ + + QTD+K LIAYSS+ HMG V GI + G+ GA+ M+ Sbjct: 260 YPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSSVGHMGLVVAGILTQTPWGLTGAVILMI 318 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HGL SSALF Y+R H+R + GL P A + T+AN+ LP +G Sbjct: 319 AHGLTSSALFCLANTNYERTHSRTMLLARGLQSVFPLLATWWFLTTLANLALPPLPNLMG 378 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 E +++ S+F S +L G ++A YSL Sbjct: 379 ELMIMTSMFNWSPFTLILTGAGAFITAAYSL 409 >gi|119360787|ref|YP_913805.1| NADH dehydrogenase subunit 4 [Phoxinus percnurus mantschuricus] gi|119225565|dbj|BAF41905.1| NADH dehydrogenase subunit 4 [Phoxinus perenurus mantschuricus] Length = 460 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ ++ AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYIMLLTSLQAFLVMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P S+ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLIIQYAQPLSLHTWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMVLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPTH-IMKLPPFHTREHLLM 438 >gi|295293614|gb|ADF88152.1| NADH dehydrogenase subunit 4 [Pan troglodytes ellioti] Length = 459 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 219/396 (55%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + T ++ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALI---YTHNTLGSLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + ++ + W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 ILLLTLTTQELSNTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 355 MAFWWLLASLTNLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + +K RE +++ PI +LT+ Sbjct: 415 QWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLTL 449 >gi|28867227|ref|NP_789857.1| NADH dehydrogenase subunit 4 [Muntiacus crinifrons] gi|28569627|gb|AAO43647.1| NADH dehydrogenase subunit 4 [Muntiacus crinifrons] Length = 459 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 203/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P + +S + + + Y+ ++L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLTASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 L---YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L Y M P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LMLQYWMQPLPNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYSLYM 410 >gi|289183059|ref|YP_003457053.1| NADH dehydrogenase subunit 4 [Himantolophus albinares] gi|288908879|dbj|BAI77127.1| NADH dehydrogenase subunit 4 [Himantolophus albinares] Length = 460 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 205/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + H+G D +S L+VLT +L P IL+S + R Y+ L+ +I AF + Sbjct: 54 NLHMGTDPLSTPLLVLTCWLLPLMILASQNHMAPEPLNRQRTYITLLTSLQLFLIVAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP ++I WG ++R+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLILITRWGNQTQRLNAGTYFLFYTLAGSLPLLVALLLLQNNTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L+ S P + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLHYSSPTPLTTYADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I F +L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLVTLEPLTKELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + ++AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 LLPLMASWWFIASLANLALPPLPNLMGELMILTSLFNWSYWTLALTGAGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|197935806|ref|YP_002213575.1| NADH dehydrogenase subunit 4 [Procypris rabaudi] gi|154818381|gb|ABS87669.1| NADH dehydrogenase subunit 4 [Procypris rabaudi] Length = 460 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAMWWFAANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-HHITGLQPFHTREHLLM 438 >gi|12583915|gb|AAG59675.1| NADH dehydrogenase subunit 4 [Muntiacus vuquangensis] Length = 459 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAAELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE LV+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELLVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|147743074|ref|YP_001218739.1| NADH dehydrogenase subunit 4 [Parajulis poecilepterus] gi|144925939|gb|ABP03891.1| NADH dehydrogenase subunit 4 [Parajulis poecilepterus] Length = 459 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 208/366 (56%), Gaps = 13/366 (3%) Query: 73 YFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIG 127 ++C S ++G D +S L+VL+ +L P I++S + R Y+ +VL+ +I Sbjct: 50 WYCLSPYMGTDPLSSPLLVLSCWLLPLMIIASQYHLSAEPIIRQRLYITLMIVLQCFLIL 109 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 AF + ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A+++ Sbjct: 110 AFSATEVIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLF- 168 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 +K S+ L P + W W+A +F +K+P++ H WLP AHV+AP A Sbjct: 169 -QKSAGSLSMLTLQYTQPLTHTSWADSFWWVACLLAFLVKMPLYGIHLWLPKAHVEAPVA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R L L P+ + P I L+L ++ + + QTD+K L Sbjct: 228 GSMILAAVLLKLGGYGILRILAILGPMTKELAYPFII-LALWGVVMTGAICLRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+ HMG V G + +G GA+ M++HGL SSALF Y+R HTR + Sbjct: 287 IAYSSVGHMGLVIAGALTQTPAGFSGALVLMIAHGLTSSALFCLANTNYERTHTRTMVLA 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A+ ++ ++AN+ LP + E VIMS+F S +L G +++A Sbjct: 347 RGLQMALPVMAMWWLIASLANLALPPLPNLVAELTVIMSLFTWSWWTIILTGAGTLITAA 406 Query: 423 YSLWLY 428 YSL+++ Sbjct: 407 YSLYMF 412 >gi|326370328|gb|ADZ56163.1| NADH dehydrogenase subunit 4 [Orcaella heinsohni] gi|326370342|gb|ADZ56176.1| NADH dehydrogenase subunit 4 [Orcaella heinsohni] gi|326370356|gb|ADZ56189.1| NADH dehydrogenase subunit 4 [Orcaella heinsohni] gi|326370370|gb|ADZ56202.1| NADH dehydrogenase subunit 4 [Orcaella heinsohni] gi|326370384|gb|ADZ56215.1| NADH dehydrogenase subunit 4 [Orcaella heinsohni] Length = 459 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 133/384 (34%), Positives = 213/384 (55%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +E+ + Y+ ++L++++I F ++++++F Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLLKESLARKKLYITMLIMLQTLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YITFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSSI+HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSISHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T +GE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLVGELLVIMSTFSWSNLTIILMGANIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L +S RE ++ Sbjct: 415 QHG-KHTHHINNLTPISTREHALM 437 >gi|12583924|gb|AAG59681.1| NADH dehydrogenase subunit 4 [Muntiacus gongshanensis] Length = 459 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 203/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P + +S + + + Y+ ++L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLTASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLSAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 L---YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L Y M P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LMLQYWMQPLPNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYSLYM 410 >gi|254939408|dbj|BAH86716.1| NADH dehydrogenase subunit 4 [Oryzias marmoratus] Length = 460 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 201/360 (55%), Gaps = 14/360 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 ++ L D +S L++LT +L P IL+S + R Y+ L++ +I AF + Sbjct: 54 NHFLATDALSTPLLILTCWLLPLMILASQNHMNHEPINRQRTYISLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++V+ + Sbjct: 114 TEMIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLVL--QSS 171 Query: 191 TSSIIDLYAMSKFPFSIQ-----YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 S+ L P +Q W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 AGSLSFLTTQFLCPLQMQTCASKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A +F +AN+ LP +GE ++I S+F SN +L G +++A Y+L Sbjct: 350 QMALPLLATWWFLFALANLALPPLPNLMGELMIISSLFNWSNWTLILTGAGTLITASYTL 409 >gi|327492803|ref|YP_004347687.1| NADH dehydrogenase subunit 4 [Rhynchocypris lagowskii] gi|327396737|dbj|BAK14157.1| NADH dehydrogenase subunit 4 [Rhynchocypris lagowskii] Length = 460 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYIMLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLSAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYAQPLPLHSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILVQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMVLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHIMKLPPFHTREHLLM 438 >gi|260766562|gb|ACX50306.1| NADH dehydrogenase subunit 4 [Catostomus columbianus] Length = 460 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 135/360 (37%), Positives = 206/360 (57%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ + P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMMILQYSQPLALESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I S+F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFAANLANLALPPLPNLMGELMIITSLFSWSPWTIALTGVGTLITAGYSLYLF 412 >gi|229925763|ref|YP_002887581.1| NADH dehydrogenase subunit 4 [Coelodonta antiquitatis] gi|229473078|gb|ACQ73054.1| NADH dehydrogenase subunit 4 [Coelodonta antiquitatis] Length = 459 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/358 (36%), Positives = 201/358 (56%), Gaps = 18/358 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P I++S + + + Y+ + L+ +I F S++++ F Sbjct: 59 DPLSAPLLALTTWLLPLMIMASQHHLSKEPLARKKLYITMLITLQLFLIMTFTSMELISF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLIALIYI--QNLTGSLNL 176 Query: 197 L---YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 L Y+ P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 LLIQYSTQTLPDS---WSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG +R L PL S Y A LSL +I S + + QTD+K LIAYSS++ Sbjct: 234 ILLKLGGYGMLRITTILNPLTS-YMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HM V + + GA M++HGL SS LF Y+R H+R + GL + Sbjct: 293 HMALVIVAVLIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQTLL 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A+ ++ ++ N+ LP T +GE V+MS F SN +L ++++ALYSL++ Sbjct: 353 PLMAMWWLLASLTNLALPPTINLVGELFVVMSSFSWSNITIILMGTNIIITALYSLYM 410 >gi|226463903|ref|YP_002791194.1| NADH dehydrogenase subunit 4 [Blanus cinereus] gi|167375173|gb|ABZ79349.1| NADH dehydrogenase subunit 4 [Blanus cinereus] Length = 457 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/400 (33%), Positives = 215/400 (53%), Gaps = 25/400 (6%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLG-------VDGISILLVVLTTFLT 96 N +FS + ++ G ++ + W+++ + H+ +D IS L++L+ +L Sbjct: 21 NLLFSTYF--IYSMGIATLSL----SWLNHPLATHMSQTTPLTTIDTISAPLLILSCWLL 74 Query: 97 PFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 P IL+S K N R ++I L++ ++ F + ++ LFYI FE +LIP ++I Sbjct: 75 PLMILASQYHLKKEPTTNQRTFLIVTTTLQTALLITFAATELTLFYIMFETTLIPTLMLI 134 Query: 153 GVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW- 210 WG ER+ A F YT S+ +L AI++M K S+ I+L +S W Sbjct: 135 TRWGSQKERLTAGTYFIFYTLISSLPLLIAILLMH-TKYNSTTIELMQLSTLHLP-HNWT 192 Query: 211 ---MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLF 267 +W+A SF +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG R + + Sbjct: 193 HECLWLACMMSFLVKLPLYGVHLWLPKAHVEAPIAGSMILAAILLKLGGYGIAR-ITTIL 251 Query: 268 PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE 327 P Q + L+L I A+++ + QTD+K LIAYSS+ HM V + + + G+ Sbjct: 252 PTTQQTTLLPLIALALWGSIMANIICLRQTDLKSLIAYSSVGHMALVILALLTKTPWGLT 311 Query: 328 GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP 387 GAM M++HGL SS F Y+R +TR + G+ +P A ++ +ANM LP Sbjct: 312 GAMIMMIAHGLTSSMTFCLANTAYERSNTRTLIIATGMQLTLPLLATWWLLANLANMALP 371 Query: 388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 + IGE ++ ++F S T + + +L+A YSL++ Sbjct: 372 PSINIIGELSIMSTLFYWSPTTIIPLAINTLLTATYSLYM 411 >gi|332887066|dbj|BAK23169.1| NADH dehydrogenase subunit 4 [Leptocypris sp. CBM ZF 11419] Length = 460 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 138/388 (35%), Positives = 213/388 (54%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S +LG D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 STYLGTDPLSTPLLVLTCWLLPLMILASQNHINPEPIGRQRLYITLLVSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP +II WG S+R+ A F YT GS+ +L A++++ Sbjct: 114 TEVILFYIMFEATLIPTLIIITRWGNQSDRLNAGVYFLFYTLAGSLPLLVALLLLQQSAG 173 Query: 191 TSSII---DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ D+ M + + W W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLILSDMEPMLANTWGHKMW-WVGCLIAFLVKMPLYGLHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ PL+ Q P + L+L II L+ + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRIMVVSGPLSQQLVYPFMI-LALWGIIMTGLMCLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V G+ G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VGHMGLVAGGVLIQTPWGFSGAIILMVAHGLASSALFCLANTSYERTHSRTMVLARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P AV + +AN+ +P +GE ++I ++F S L G +++A YSL++ Sbjct: 352 IFPLTAVWWFLANLANLAMPPLPNLMGELMIITALFNWSPWTITLTGVGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G V L RE ++ Sbjct: 412 FLTSQRG-QVPNHVVNLSPFHTREHLLI 438 >gi|310788914|gb|ADP24460.1| NADH dehydrogenase subunit 4 [Puntius oligolepis] Length = 460 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 141/399 (35%), Positives = 217/399 (54%), Gaps = 17/399 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVGRQRSYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +L+FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 ILMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLL--QNSLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLPYSPPMQLNSWSHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ + +AN+ LP +GE ++I ++F S VL G +++A YSL+++ Sbjct: 353 FPLTAMWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIVLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + + L+ RE + + PI +L V Sbjct: 413 LMSQRGPTP-NHIMGLQPYHTREHLLMTLHLVPIILLVV 450 >gi|221145445|ref|YP_002519660.1| NADH dehydrogenase subunit 4 [Scarus schlegeli] gi|219560074|gb|ACL27238.1| NADH dehydrogenase subunit 4 [Scarus schlegeli] Length = 459 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 201/359 (55%), Gaps = 12/359 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 +G D +S L+VL+ +L P IL+S + R Y+ + L++ +I AF + ++ Sbjct: 57 MGTDPLSGPLLVLSCWLLPLMILASQNHLALEPISRQRTYISLMITLQAFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++VM T S Sbjct: 117 IMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLVM--HNTTGS 174 Query: 194 IIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + L FS + W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSTLTLQFTPTFSSTSYANKACWAACLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGIMRVLTILEPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKALIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI S G+ GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVAGILSQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A V ++A + LP + E +VI ++F S +L G +++A YSL+++ Sbjct: 354 PLMATSWFVASLAYLALPPLPNLMAELMVICTMFDWSPWTLILTGAGTLITAAYSLYMF 412 >gi|310788912|gb|ADP24459.1| NADH dehydrogenase subunit 4 [Eirmotus octozona] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 135/385 (35%), Positives = 211/385 (54%), Gaps = 13/385 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L++LT +L P IL+S I+ R Y+ ++L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLILTCWLLPLMILASQNHIKHEPINRQRLYITLLILLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQVERLNAGTYFLFYTLMGSLPLLIALLLL--QQF 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 TS++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TSTLSMLILQYTQPLQLNSWGHTIWWAGCLIAFLVKMPLYGIHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTTYERTHSRTMILTRGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + +AN+ LP +GE +I ++F S +L G +++A YSL Sbjct: 351 MILPLATIWWFTANLANLALPPLPNLMGELTIITTLFSWSPWTILLTGLGTLITAGYSLH 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRE 451 ++ G + L+ RE Sbjct: 411 MFLTTQRGQTP-NHTMGLQPFHTRE 434 >gi|226463864|ref|YP_002791142.1| NADH dehydrogenase subunit 4 [Batrachuperus yenyuanensis] gi|51891130|gb|AAU12949.1| NADH dehydrogenase subunit 4 [Batrachuperus yenyuanensis] gi|84371641|gb|ABC56082.1| NADH dehydrogenase subunit 4 [Batrachuperus yenyuanensis] Length = 456 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/396 (33%), Positives = 221/396 (55%), Gaps = 16/396 (4%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSS 103 N ++SL + SS M + +LG+D +S L++LT +L P IL+S Sbjct: 21 NLLWSLMTTNSLIIAMSSLMMFNLSSEHMLMVNKYLGLDNLSSPLLILTCWLLPMMILAS 80 Query: 104 WKSIQ---ENF-REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-S 158 ++ EN R Y+ ++L++ +I AF + ++++FYI FE +LIP +II WG + Sbjct: 81 QNHLKNSPENRQRMYITMMVILQTSLILAFAATELIMFYIAFETTLIPTLIIITRWGNQA 140 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY------AMSKFPFSIQYWMW 212 ER+ A F YT GS+ +L A++ + + S + L+ M +S + W W Sbjct: 141 ERLNAGTYFLFYTLAGSLPLLVALLTL---QNFSGSLSLFLLELINPMQLMMYSDKIW-W 196 Query: 213 IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQ 272 A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL+ + Sbjct: 197 TACLLAFMVKMPLYGMHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISIMLTPLSKE 256 Query: 273 YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 P I L+L ++ ++ QTD+K LIAYSS++HMG V + GA+ Sbjct: 257 LSYPFII-LALWGVVMTGMICTRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSLSGAIIL 315 Query: 333 MLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392 M+SHGL+SSALF + Y+R H+R + G +P A M+ ++NM LP + Sbjct: 316 MISHGLISSALFCLANMNYERTHSRTLLLMRGTQTMLPLMATWWMLINLSNMALPPSLNL 375 Query: 393 IGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 GE ++++S+F SN ++ G +++A Y+L+++ Sbjct: 376 WGELMIMVSLFNWSNWTILITGIGTLITASYTLYMF 411 >gi|332887024|dbj|BAK23130.1| NADH dehydrogenase subunit 4 [Hemigrammocypris rasborella] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPITRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P I W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYSQPMLIDSWGHKVWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P + L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELVYPFVI-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGMGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L+ RE ++ Sbjct: 411 MFLMSQRGPTP-NHITKLQPFHTREHLLM 438 >gi|327492873|ref|YP_004347832.1| NADH dehydrogenase subunit 4 [Phoxinus percnurus] gi|327396765|dbj|BAK14183.1| NADH dehydrogenase subunit 4 [Phoxinus percnurus] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ ++ AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYIMLLTSLQAFLVMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P S+ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLIIQYAQPLSLHTWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y++ H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYEQTHSRTMVLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ ++ +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAIWWLIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPTH-IMKLPPFHTREHLLM 438 >gi|300507586|dbj|BAJ11203.1| NADH dehydrogenase subunit-4 [Cobitis striata] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVSLQTFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLHSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMTVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF +Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTVYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTATWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGVGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + + L RE ++ Sbjct: 411 LFLMSQRGPTP-QHITGLPPFHTREHLLL 438 >gi|148922750|ref|YP_001293693.1| NADH dehydrogenase subunit 4 [Coilia nasus] gi|148762558|dbj|BAF64006.1| NADH dehydrogenase subunit 4 [Coilia nasus] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 139/400 (34%), Positives = 217/400 (54%), Gaps = 19/400 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S Q R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSSPLLVLTCWLLPLMILASQNHTQAEPISRQRTYISLLASLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T+ Sbjct: 116 MIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLAL---QTTT 172 Query: 193 SIIDLYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + + ++ P S+ W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 GGLSMITLNFNQPLSLISWGDKLWWTACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L PL P I L+L I+ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRITPILDPLTKDMAYPFII-LALWGIVMTGTICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI + G+ GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVASGILTQTPWGMTGAIILMIAHGLTSSALFCLANTSYERTHSRTMALARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A + +AN+ LP +GE ++I ++F S VL G +++A YSL++ Sbjct: 352 LFPLTATWWFIANLANLALPPLPNLMGEMMIITTMFNWSPWSIVLTGLGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + L RE ++ PI +LT+ Sbjct: 412 FLMTQRGQTPTH-ITALPPYHTREHLLISLHLIPIILLTI 450 >gi|204305229|gb|ACH99452.1| NADH dehydrogenase subunit 4 [Dibamus novaeguineae] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 149/416 (35%), Positives = 220/416 (52%), Gaps = 15/416 (3%) Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIG 127 + F + + +D IS L+VL+ +L P L+S + QE R ++I +L++ ++ Sbjct: 50 NSFSNNIMNIDMISAPLLVLSCWLLPLMALASQNHLSQEPLVRKRLFLITITILQTSLLM 109 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 F + +++LFYI FE +LIP +II WG +ER+ A F YT FGS+ ML AI+ M Sbjct: 110 TFTASNLILFYIMFETTLIPTLIIITRWGNQAERLNAGIYFLFYTLFGSLPMLVAILYMN 169 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 S+ +Y + P Q W +W A +F +K+P++ H WLP AHV+AP A Sbjct: 170 TMYNFMSLTMMYLLQ--PELSQSWTNTMLWFACLLAFMVKMPLYGLHLWLPKAHVEAPIA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA I+LK+GGYG IR L P+ F P + L+L II S + + QTD+K L Sbjct: 228 GSMVLAAILLKLGGYGIIRITTALSPMTKPLFYPFMI-LALWGIIMTSSICLRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V I G+ GAM M++HGL SS LF Y+R H+R + Sbjct: 287 IAYSSVSHMGLVIASILIQTPWGLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTMVLA 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G+ +P ++ + NM LP T +GE ++I S+F S +L G +L+A Sbjct: 347 RGMQLILPLMTSWWLLANLTNMALPPTINLMGELMIISSLFNWSMLTILLTGLGTLLTAA 406 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLS-LRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 YSL ++ G K L + RE ++ A I P+ I TFS Sbjct: 407 YSLHMFLMTQRG--KLPTHLSLNSPTHTREHILMLLHATPMCLLIINPLSIWGTFS 460 >gi|296905340|gb|ADH84033.1| NADH dehydrogenase subunit 4 [Oreonectes platycephalus] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQT 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTPGSWGHNIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVVLGPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTAYERTHSRTMLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIMLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L L RE ++ Sbjct: 411 LFLMTQRGPTPNHXI-SLPPLHTREHLLM 438 >gi|164420917|ref|YP_001648783.1| NADH dehydrogenase subunit 4 [Hynobius quelpaertensis] gi|120969728|gb|ABM45929.1| NADH dehydrogenase subunit 4 [Hynobius quelpaertensis] Length = 459 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/399 (33%), Positives = 222/399 (55%), Gaps = 14/399 (3%) Query: 40 ISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFC 99 +S N ++SL + F S + + +LG+D +S L++LT +L P Sbjct: 17 LSNKNLLWSLMTTNSFLIAMLSLMLFNLPSEYTLMINKYLGLDPLSSPLLILTCWLLPMM 76 Query: 100 ILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 IL+S ++ N R Y+ ++L++ +I AF + ++++FYI FE +LIP +II W Sbjct: 77 ILASQNHMKNNPLNRQRMYISMMIILQASLILAFAATEIIMFYIAFETTLIPTLIIITRW 136 Query: 156 GG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFP-----FSIQY 209 G +ER+ A F YT GS+ +L A+++ ++ + S+ L P +S + Sbjct: 137 GNQAERLNAGTYFLFYTLAGSLPLLVALLI--FQSHSGSLSLLLLELTNPMQLTLYSDKI 194 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 W W A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL Sbjct: 195 W-WAACLLAFMVKMPLYGMHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISIMLTPL 253 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 + + P I L+L +I ++ M QTD+K LIAYSS++HMG V GA Sbjct: 254 SKELSYPFII-LALWGVIMTGMICMRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGA 312 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 + M+SHGL+SSALF + Y+R H+R + G +P A ++ ++NM LP + Sbjct: 313 IILMISHGLISSALFCLANMNYERTHSRTLLLMRGAQVMLPLMATWWLLTNLSNMALPPS 372 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 GE +++S+F SN ++ G +++A Y+L+++ Sbjct: 373 LNLWGELTIMVSLFNWSNWTILITGLGTLITASYTLYMF 411 >gi|310788896|gb|ADP24451.1| NADH dehydrogenase subunit 4 [Probarbus jullieni] Length = 452 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 48 YMATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYISLLASLQTFLIMAFGATE 107 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 108 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 165 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 166 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 225 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 226 AVLLKLGGYGMMRMMTMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 284 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 285 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 344 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 345 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 404 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 405 LMSQRGPTP-NHIMGLQPFHTREHLLM 430 >gi|194277562|ref|YP_492590.2| NADH dehydrogenase subunit 4 [Hemibarbus longirostris] gi|190888473|gb|ABC56389.2| NADH dehydrogenase subunit 4 [Hemibarbus longirostris] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRLYIMLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ Q P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKQLVYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ + +AN+ LP +GE ++I ++F S VL G +++A YSL+++ Sbjct: 353 FPLTAIWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIVLTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-ITKLPPFHTREHLLM 438 >gi|189182386|gb|ACD81904.1| NADH dehydrogenase subunit 4 [Ophisaurus attenuatus] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 206/375 (54%), Gaps = 19/375 (5%) Query: 70 WIDY-------FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAF 118 W+ Y F + + +D +S L+VL+ +L P ++S + + R Y+ Sbjct: 41 WLKYPMDLELSFSNKLMSIDPLSAQLLVLSCWLLPXLSMASQNHLHQEPIIRKRIYLTTL 100 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIF 177 L++ +I F + D+ + YI FEA+LIP ++I WG +ER+ A F YT GS+ Sbjct: 101 TALQTFLILTFTASDLTMLYIMFEATLIPTLIVITRWGHQAERLSAGTYFLFYTLAGSLP 160 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLP 233 +L AI+ + + L+++ P W +W +F +K+P++ H WLP Sbjct: 161 LLIAILYFNKSLLLTYMPILHSLQ--PDLQNSWSNIALWYGCLLAFMVKMPLYGLHLWLP 218 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 AHV+AP AGS+ LA ++LK+GGYG +R LFPL + P + L+L I+ AS + Sbjct: 219 KAHVEAPIAGSMVLAAVLLKLGGYGIMRISTTLFPLTNTLAYPFLI-LALWGILMASSIC 277 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTD+K +IAYSSI+HMG V + + GAMF M++HGL SS LF Y+R Sbjct: 278 LRQTDLKSMIAYSSISHMGLVICATMIQTQWSLTGAMFLMIAHGLTSSMLFCLANTNYER 337 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 H+R + GL +P ++ ++AN+ LP + +GE L+I S+F SNT +L Sbjct: 338 THSRTLLLTRGLHIVLPLMTFWWLIASLANLALPPSINLMGELLIISSLFNWSNTTIILT 397 Query: 414 SFGVVLSALYSLWLY 428 G +L+A YSL+++ Sbjct: 398 GLGTLLTASYSLYMF 412 >gi|108470176|ref|YP_626669.1| NADH dehydrogenase subunit 4 [Batrachuperus tibetanus] gi|84371627|gb|ABC56069.1| NADH dehydrogenase subunit 4 [Batrachuperus tibetanus] Length = 458 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 213/361 (59%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSW---KSIQENF-REYMIAFLVLESMVIGAFLS 131 + ++G+D +S L++LT +L P IL+S K+ EN R Y+ ++L++ +I AF + Sbjct: 53 NKYMGLDPLSSPLLILTCWLLPMMILASQNHLKNTPENRQRTYITMMIILQTSLILAFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 113 TEMIMFYITFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLQNSSG 172 Query: 191 TSSIID---LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S++ + M +S + W W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 SLSLLLLELINPMQLMMYSDKIW-WVACLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL+ + P I L+L +I S++ M QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGILRISIMLTPLSKELSYPFII-LALWGVIMTSMICMRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 291 VSHMGLVIAAALIQTPWSLSGAIILMISHGLISSALFCLANMNYERTHSRTLLLMRGTQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P ++ ++NM LP + GE +++S+F SN ++ G +++A Y+L++ Sbjct: 351 MLPLMTTWWLLVNLSNMALPPSLNLWGELTIMVSLFNWSNWTILITGIGTLITASYTLYM 410 Query: 428 Y 428 + Sbjct: 411 F 411 >gi|56912177|ref|YP_173345.1| NADH dehydrogenase subunit 4 [Carassius auratus auratus] gi|56798138|dbj|BAD82938.1| NADH dehydrogenase subunit 4 [Carassius auratus auratus] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQAFLIMAFGATQ 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 TIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|289183171|ref|YP_003457157.1| NADH dehydrogenase subunit 4 [Thaumatichthys pagidostomus] gi|288908991|dbj|BAI77231.1| NADH dehydrogenase subunit 4 [Thaumatichthys pagidostomus] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 204/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L++LT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDTLSTPLLILTCWLLPLMILASQNHMAPEPLNRQRVYITLLTSLQLFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +L+FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 VLMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S P + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSSPSPLTTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR L+ L PL + P I F +L ++ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRMLIILEPLTKELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI + G GA+ M+SHGL SSALF Y+R H+R + G+ + Sbjct: 294 HMGLVIAGILTQTSWGFTGALILMISHGLTSSALFCLANTNYERTHSRTMVLARGMQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTSWWFIASLANLALPPLPNLMGELMILTSLFNWSPWTIILTGAGTLITAAYSLYMF 412 >gi|153124550|ref|YP_001382242.1| NADH dehydrogenase subunit 4 [Calotes versicolor] gi|150445961|dbj|BAF69013.1| NADH dehydrogenase subunit 4 [Calotes versicolor] Length = 454 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 124/363 (34%), Positives = 209/363 (57%), Gaps = 11/363 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + H +D +S L+VLTT+L P I++S ++ R +++ V++ ++ Sbjct: 52 FSNQHFMLDQVSAPLLVLTTWLLPMMIMASQNHLKTEPLPRKRLFLVNVAVMQLLLYMTL 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +++LF+I FE++LIP ++I WG +R+ A F YT GS+ +L AI++M + Sbjct: 112 STNNLVLFFILFESTLIPTLILITRWGAQPKRLEAGNYFMFYTLMGSLPLLTAILLMNNQ 171 Query: 189 KKTSSIIDLYAMSKFPF-SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S ++ +S P + + +W A +F IK+P++ H WLP AHV+AP AGS+ L Sbjct: 172 NSHSYMLMTNDLSYTPTPTTEEIVWTACMVAFLIKLPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRF--LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 A ++LK+GGYG IR +LP S + P+I ++L +I SL + QTD+K LIAY Sbjct: 232 AAVLLKLGGYGIIRISTILPQT-YVSMMYPPII--MALWGLIMTSLTCIRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V + G M M++HGL SS LF +IY+R +TR IFA GL Sbjct: 289 SSVGHMGLVISATMIQTPWSISGTMILMVAHGLTSSMLFCLANMIYERTNTRTIFAMRGL 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 MP + ++ ++ N+ LP T +GE +++ +++ + + ++ G +++A YSL Sbjct: 349 QKYMPLMTTMWLIASLTNLALPPTLNLVGEIMIMSALYNWAQPTIIASATGAMITATYSL 408 Query: 426 WLY 428 +++ Sbjct: 409 YMF 411 >gi|108564767|ref|YP_626711.1| NADH dehydrogenase subunit 4 [Batrachuperus gorganensis] gi|84371697|gb|ABC56134.1| NADH dehydrogenase subunit 4 [Batrachuperus gorganensis] Length = 459 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 138/410 (33%), Positives = 225/410 (54%), Gaps = 11/410 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +LG+D +S L++LT +L P IL+S ++ N R Y+I ++L++ +I AF + Sbjct: 53 NKYLGLDPLSSPLLILTCWLLPMMILASQNHLKNNPMNHQRMYIIMLIILQTSLILAFSA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++F+I FE +LIP +II WG ER+ A F YT GS+ +L A++++ Sbjct: 113 TEMIMFFIAFETTLIPTLIIITRWGNQVERLNAGTYFLFYTLAGSLPLLVALLILQNSMG 172 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S+ L + FS + W W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 SLSLFLLELVCPLQLTLFSDKIW-WVACLLAFLVKMPLYGMHLWLPKAHVEAPIAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL+ + P I L+L +I ++ M QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGILRISIMLTPLSKELSYPFII-LALWGVIMTGVICMRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 291 VSHMGLVIAAALIQTPWSFTGAIILMISHGLISSALFCLANMNYERTHSRTLLLMRGTQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P ++ ++NM LP + GE +++S+F SN ++ G +++A Y+L++ Sbjct: 351 ILPLMTTWWLLINLSNMALPPSLNLWGELTIMVSLFNWSNWTIMITGIGTMITASYTLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 + G + RE ++ + TV F + P I FS Sbjct: 411 FLMTQRG-PMPNHLNSTTPTYTREHFLLAAHIIPTVLFILKPELISGMFS 459 >gi|332886786|dbj|BAK22909.1| NADH dehydrogenase subunit 4 [Macrochirichthys macrochirus] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTMQYSKPLLMDSWSHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVASGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGMGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|229002672|dbj|BAH57772.1| NADH dehydrogenase subunit 4 [Carassius auratus] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSTLFCLANTAYERTHSRTMILARGLQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|317176715|dbj|BAJ54515.1| NADH dehydrogenase subunit 4 [Mormyrus rume] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/398 (34%), Positives = 218/398 (54%), Gaps = 19/398 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHITPEPINRQRTYITLLISLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 116 VIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFIFYTLAGSLPLLVALLIL---QKDL 172 Query: 193 SIIDLYAMSKF-PFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + + M + P + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 GTLSMLTMQYYNPTEMASWGDKIWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L++ II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLTPLTKELAYPFII-LAMWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + +AN+ LP +GE ++I S+F S ++ G +++A YSL++ Sbjct: 352 ILPLMTAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTIIVTGLGTLITAAYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVL 461 + G ++ + L+ RE ++ P+A+L Sbjct: 412 FLMTQRGPTQAHTI-TLQPSHTREHLLMTLHLIPVALL 448 >gi|332886828|dbj|BAK22948.1| NADH dehydrogenase subunit 4 [Leptobarbus hoevenii] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/390 (34%), Positives = 212/390 (54%), Gaps = 13/390 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFL 130 + +L +D +S L+VLT +L P IL+S I R Y+ L+ +I AF Sbjct: 53 ANTYLAMDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQMFLIMAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 113 ATEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQ 170 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 STGTLSMLVLQYSQPLTLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMVTLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P A V +AN+ LP +GE ++I ++F S L G +++A YSL Sbjct: 350 QMIFPLTAAWWFVANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGMGTLITASYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + + +L RE ++ Sbjct: 410 YMFLMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|169666015|gb|ACA63665.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus purpureus] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEVTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLSSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTAWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFTANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|119360243|ref|YP_913311.1| NADH dehydrogenase subunit 4 [Notemigonus crysoleucas] gi|119224991|dbj|BAF41372.1| NADH dehydrogenase subunit-4 [Notemigonus crysoleucas] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 SLYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRLYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLL--QKS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYTQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L RE ++ Sbjct: 411 MFLMSQRGPTP-SHIMKLPPFHTREHLLM 438 >gi|119360773|ref|YP_913753.1| NADH dehydrogenase subunit 4 [Vaillantella maassi] gi|119225481|dbj|BAF41827.1| NADH dehydrogenase subunit 4 [Vaillantella maassi] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPMNRQRLYISLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIVLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAITLMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAAWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L RE ++ Sbjct: 411 MFLMTQRGQTP-NHISGLPPFHTREHLLM 438 >gi|51891128|gb|AAU12948.1| NADH dehydrogenase subunit 4 [Batrachuperus tibetanus] Length = 459 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 213/361 (59%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSW---KSIQENF-REYMIAFLVLESMVIGAFLS 131 + ++G+D +S L++LT +L P IL+S K+ EN R Y+ ++L++ +I AF + Sbjct: 53 NKYMGLDPLSSPLLILTCWLLPMMILASQNHLKNTPENRQRTYITMMIILQTSLILAFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 113 TEMIMFYITFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLQNSSG 172 Query: 191 TSSIID---LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S++ + M +S + W W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 SLSLLLLELINPMQLMMYSDKIW-WVACLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL+ + P I L+L +I S++ M QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGILRISIMLTPLSKELSYPFII-LALWGVIMTSMICMRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 291 VSHMGLVIAAALIQTPWSLSGAIILMISHGLISSALFCLANMNYERTHSRTLLLMRGTQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P ++ ++NM LP + GE +++S+F SN ++ G +++A Y+L++ Sbjct: 351 MLPLMTTWWLLVNLSNMALPPSLNLWGELTIMVSLFNWSNWTILITGIGTLITASYTLYM 410 Query: 428 Y 428 + Sbjct: 411 F 411 >gi|52221090|ref|YP_086876.1| NADH dehydrogenase subunit 4 [Amphisbaena schmidti] gi|47026708|gb|AAT08525.1| NADH dehydrogenase subunit 4 [Amphisbaena schmidti] Length = 452 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 117/369 (31%), Positives = 207/369 (56%), Gaps = 9/369 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDML 135 +D IS L++LT +L P L+S + +Q +R ++ VL++ ++ F + ++ Sbjct: 58 SIDQISAPLMILTCWLLPLMALASQQHLQPEPKPTYRTFLTTIAVLQAALLLTFSATELT 117 Query: 136 LFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FE +LIP ++I WG ER+ A F YT S+ + ++ ++ ++ Sbjct: 118 MFYIMFETTLIPTLMLITRWGSQHERLAAGSYFIFYTLISSLPL-LVALLFLYKTNHNTT 176 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 ++L +++ P +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 177 LELIILTQ-PAQTHELLWLACMMAFLVKLPLYSLHLWLPKAHVEAPIAGSMVLAAILLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG +R +LP+FP+ + P+ L+L I S++ + QTD+K LIAYSS++HM V Sbjct: 236 GSYGILR-ILPIFPIMQKTTLPLTA-LALWGAIMTSIICLRQTDLKSLIAYSSVSHMALV 293 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + + G+ GAM M++HGL SS F Y+R +TR + GL +P Sbjct: 294 ILALLTQTSWGLTGAMMLMIAHGLTSSMAFCLANTAYERTNTRTLTLVTGLQLLLPLMTT 353 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP ++ +GE +I+++F S T + + +++A+YSL+++ G Sbjct: 354 WWLLMSLANLALPPSTNLMGELSIIVALFNWSPTTIIPLTLNTLMTAVYSLYMFTTTQHG 413 Query: 435 VSKCEKVQQ 443 Q Sbjct: 414 KPNSTTAQH 422 >gi|330371444|gb|AEC12702.1| NADH dehydrogenase subunit 4 [Puntius sarana] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 133/360 (36%), Positives = 203/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRAYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 >gi|39981053|gb|AAR33054.1| NADH dehydrogenase subunit 4 [Ziphius cavirostris] Length = 459 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/381 (34%), Positives = 205/381 (53%), Gaps = 9/381 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ + L++++I F +++++LF Sbjct: 59 DSLSTPLLMLTMWLLPLMLMASQSHLLKEPLTRKKLYITMLITLQALLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+ + T + + Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALTYLQNTMGTLNFLL 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 +A P MW+A +F +K+P++ H WLP AHV+AP AGS+ LA + LK+ Sbjct: 179 XQHWAQPLSPSWSNTLMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVXLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + PL +++ A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLR-ITPLLNPLTEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IAAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ +M N+ LP T IGE LV+MS F SN +L +V++ALYSL++ G Sbjct: 358 WWLLASMTNLALPPTINLIGELLVVMSAFSWSNLTIILMGTNIVITALYSLYMLIMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCMV 455 + L RE ++ Sbjct: 418 X-HTHHINNLTPSFTREHALM 437 >gi|38707608|ref|NP_944694.1| NADH dehydrogenase subunit 4 [Berardius bairdii] gi|38602511|emb|CAD87971.1| NADH4 protein [Berardius bairdii] Length = 459 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/382 (34%), Positives = 209/382 (54%), Gaps = 11/382 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ +VL++++I F +++++LF Sbjct: 59 DSLSTPLLMLTMWLLPLMLMASQFHLLKEPLTRKKLYITMLIVLQTLLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + T + + Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALTYLQNTMGTLNFLL 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 L ++ P S + MW+A +F K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 LQHWAQ-PLSSSWSNTLMWLACMMAFLAKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMLR-ITPLLNPLTEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V I GA M++HGL SS LF Y+R+H+R + GL ++P A Sbjct: 297 VIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQISLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYSL++ Sbjct: 357 TWWLLASLTNLALPPTINLIGELFVVMSTFSWSNPTIILMGTNILITALYSLYMLIMTQH 416 Query: 434 GVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 417 G-KHTHHINNLTPSFTREHALM 437 >gi|38707502|ref|NP_944655.1| NADH dehydrogenase subunit 4 [Balaenoptera acutorostrata] gi|38602469|emb|CAD87932.1| NADH4 protein [Balaenoptera acutorostrata] Length = 459 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/356 (36%), Positives = 206/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + R+ Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLILTMWLLPLMLMASQSHLIKEPPIRKKLYITMLVTLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALMYL---QNTAGTLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAQPLSTSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSSI+HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSISHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I G M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGGTALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MS+F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSIFSWSNPTILLMGTNIVITALYSLYM 410 >gi|296099608|gb|ADG95214.1| NADH dehydrogenase subunit 4 [Polypterus delhezi] Length = 458 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 208/359 (57%), Gaps = 7/359 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++ + D IS L+VLT +L P IL+S I R Y++ + L++++I AF + Sbjct: 54 NFMMATDTISTPLIVLTCWLLPLMILASQNHISSEPINRQRSYIMLLVSLQTLLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 114 TEIILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLYLYNITG 173 Query: 191 TSSIIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + SI+ + + P + ++W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSILSMNLIFIHPNTWADTFLWAACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR + L P A++ A L+L II + M Q+D+K LIAYSS++ Sbjct: 234 VLLKLGGYGMIRMTIILEP-ATKSLAYPFIILALWGIIMTGSICMRQSDMKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ M Sbjct: 293 HMGLVAAGILIQTPWGFTGAIILMIAHGLTSSALFCLANTSYERTHSRTLLLARGMQIIM 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ +++NM LP +GE ++++S+F S +L G +++A YSL+L+ Sbjct: 353 PLMTTWWLIISLSNMALPPLPNLMGELMIMVSMFNWSIWTILLTGTGTLITASYSLYLF 411 >gi|39981071|gb|AAR33066.1| NADH dehydrogenase subunit 4 [Caperea marginata] Length = 459 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 204/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +E+ + Y+ +VL++++I F + +++LF Sbjct: 59 DPLSTPLLILTMWLLPLMLMASQSHLLKESLTRKKLYVTMLIVLQTLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T S+ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALTYL--QNTTGSLNF 176 Query: 195 --IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + + P +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LLLQHWTQPLSPTWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITFMLDPL-TEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL ++P Sbjct: 296 LVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRIMILARGLQISLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE L +MS+F SN L +V++ALYSL++ Sbjct: 356 ATWWLLASLMNLALPPTINLIGELLTVMSIFSWSNPTIFLMGTNIVITALYSLYM 410 >gi|25057385|ref|NP_740214.1| NADH dehydrogenase subunit 4 [Gymnothorax kidako] gi|25006418|dbj|BAB88178.1| NADH dehydrogenase subunit 4 [Gymnothorax kidako] Length = 459 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 216/387 (55%), Gaps = 10/387 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +SI L++L+ +L P I++S + R +++ L+ +I AF S Sbjct: 54 NLYLATDPLSIPLLILSCWLLPLMIIASQNHMSTEPISRQRTFIMLLTFLQIFLILAFSS 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 114 TEVMMFYIMFEATLIPTLIVITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLALQKDLG 173 Query: 191 TSS--IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 T S II + + +++W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMFIIQHADIHISSWGVKFW-WAACLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P+ + P I L+L II + M QTD+K +IAYSS+ Sbjct: 233 AVLLKLGGYGMMRVMTVLTPMTKELAYPFIV-LALWGIIMTGSICMRQTDLKSMIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 SHMGLVAAGIMIQTPWGFTGAIILMIAHGLVSSALFCMANTNYERTHSRTLLLARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 352 LPLMATWWFISSLANLALPPLPNLMGELMIITSMFNWSRLTIILTGLGTLITAAYSLYMF 411 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 412 LMTQRGPTP-NHIIGLEPSHTREHLLI 437 >gi|11466061|ref|NP_038220.1| NADH dehydrogenase subunit 4 [Pichia canadensis] gi|22654265|sp|P48917|NU4M_PICCA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|11036349|dbj|BAA06575.2| NADH dehydrogenase subunit 4 [Pichia canadensis] Length = 511 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/406 (33%), Positives = 227/406 (55%), Gaps = 33/406 (8%) Query: 54 VFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 +F+ FQ+I Y I++ G+DGIS+ L+ LT L P ++S+W +I +N + Sbjct: 57 LFNNNILGFQLINNYININW------GIDGISLWLINLTLILLPISLISNW-NISKNEDK 109 Query: 114 -----YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG----------- 157 Y++ L++ ++I F+ LD++ FYI FEA+L+P+F++IG G Sbjct: 110 SKVLTYVLLILIIGIIIILNFICLDLITFYILFEATLLPLFILIGKLGSLPYNGNNKIII 169 Query: 158 --------SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 + R AAY F+YT F S+FML +I + + ++ +Q Sbjct: 170 KGINNNNITPREKAAYYIFIYTLFSSLFMLLSIGIYIYMINNIDYNNI-YNIILSIDLQS 228 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 ++I +K P+FP HTWLP H ++P +GS+ LAGI++K+ Y IR +L Sbjct: 229 IIFIGLIIGILVKTPVFPVHTWLPLVHAESPISGSIILAGIIIKLAIYAIIRLILINLSD 288 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 + P+I+ + ++ I Y L+++ Q DIK +IAYSSI HM + IFS G+EG+ Sbjct: 289 VIIIYNPLIYTIGILTIFYIGLITLKQIDIKVIIAYSSIIHMAIAIMSIFSNNILGIEGS 348 Query: 330 MFQMLSHGLVSSALFFCVG-VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 + ++HG S ALF VG ++YDR H+R I+ Y L MP +++ +++ + NMG+P Sbjct: 349 LLISIAHGFASPALFLLVGGILYDRYHSRLIYYYQSLATYMPIFSIYLLIAGLFNMGIPL 408 Query: 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + FIGEFL + +F ++ A+L++F + ++ +Y + L K+++G Sbjct: 409 SLNFIGEFLSLNGIFIYNSLFAILSTFSLFITTIYQMKLTTKLLYG 454 >gi|296905352|gb|ADH84041.1| NADH dehydrogenase subunit 4 [Lepturichthys fimbriata] Length = 460 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 205/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPVTRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIILFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLALNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGVGTLITAGYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|295641127|gb|ADG22673.1| NADH dehydrogenase subunit 4 [Mustela frenata] Length = 459 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/388 (34%), Positives = 207/388 (53%), Gaps = 29/388 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P I++S + + + Y+ ++L+ +I F + ++++F Sbjct: 59 DSLSAPLLALTTWLLPLMIMASQHHLSKETLIRKKLYITMLIMLQLFLIMTFAATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + ++ Sbjct: 119 YILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALL---WIQNDLGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 L-------LIIQYWTQPLLNSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L PL + Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITLLLNPL-TNYMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIMAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T +GE V+M+ F SN VL + ++ALYS Sbjct: 348 LQMLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIVLMGINITITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KYTHHIKNIKPSFTREN 434 >gi|270267360|ref|YP_003331064.1| NADH dehydrogenase subunit 4 [Vicugna vicugna] gi|213389358|gb|ACJ45797.1| NADH dehydrogenase subunit 4 [Vicugna vicugna] Length = 459 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/391 (33%), Positives = 212/391 (54%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DALSAPLLVLTTWLLPLMLIASQSHLSKEPLTRKKLYITMLILLQVLLIMTFTASELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGSYFLFYTLAGSLPLLVALVYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 M QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 FLIM-------QYWNQPLMDSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL ++Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRLTAMLNPL-TEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATTLMVAHGLTSSMLFCLANTNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A+ ++ ++ N+ LP T +GE VIM+ F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAMWWLLASLTNLALPPTINLLGELFVIMASFSWSNITIILMGANMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + + +K RE ++ Sbjct: 408 LYMLIMTQRG-NYTHHINNIKPTYTRENSLM 437 >gi|9801580|ref|NP_063910.1| NADH dehydrogenase subunit 4 [Lama pacos] gi|9558353|emb|CAC00511.1| NADH4 [Lama pacos] gi|38602637|emb|CAD98822.1| NADH4 protein [Lama pacos] Length = 459 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/391 (33%), Positives = 212/391 (54%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DALSAPLLVLTTWLLPLMLIASQSHLSKEPLTRKKLYITMLILLQVLLIMTFTASELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGSYFLFYTLTGSLPLLVALVYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 M QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 FLIM-------QYWNQPLMDSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL ++Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRLTAMLNPL-TEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATTLMVAHGLTSSMLFCLANTNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A+ ++ ++ N+ LP T +GE VIM+ F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAMWWLLASLTNLALPPTINLLGELFVIMASFSWSNITIILMGANMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + + +K RE ++ Sbjct: 408 LYMLIMTQRG-NHTYHINNIKPTYTRENSLM 437 >gi|5565826|gb|AAD45215.1| NADH dehydrogenase subunit 4 [Marmota caudata] Length = 408 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 135/356 (37%), Positives = 201/356 (56%), Gaps = 12/356 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L++LT +L P I++S + QE + Y++ + L+S +I F + ++++ Sbjct: 44 TDPLSSPLLILTAWLLPLMIMASQSHLTQEPLIRKKLYILMLISLQSFLIMTFSATELIM 103 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+LIP VII WG +ER+ A F YT S+ +L A++ + +K T S Sbjct: 104 FYILFEATLIPTLVIITRWGNQTERLNAGLYFLFYTLASSLPLLVALIFI--QKSTGSLN 161 Query: 194 -IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 II Y P S + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 162 FIISTYQSPILPTSWTNHILWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 221 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR L PL S P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 222 LKLGGYGMIRISTFLHPLTSNMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 280 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 281 ALVIVAIMIQTPWSFMGATTLMIAHGLTSSMLFCLANTNYERIHSRAMTLARGLQSILPL 340 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A + T+ N+ LP + IGE +IM+ F S+ +L ++ +ALYSL++ Sbjct: 341 MATWWTLATLTNLALPPSINLIGELFIIMASFTWSSISIILTGLNMLTTALYSLYM 396 >gi|269302353|gb|ACZ29026.1| NADH dehydrogenase subunit 4 [Meles meles] Length = 459 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/389 (33%), Positives = 209/389 (53%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 VD +S L++LTT+L P +++S + + + Y+ ++L+ +I F + ++++ Sbjct: 58 VDSLSAPLLMLTTWLLPLMLMASQHHLSKETLTRKKLYITMLIMLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLMPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALL---WAQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NL-------LVIQYWAQPLSNSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL + P + LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITMLLNPLTNLMAYPFMM-LSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIMAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+M+ F SN +L + ++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITILLMGINITITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G ++ +K RE Sbjct: 407 SLYMLITTQRG-KYTHHIKNIKPSFTREN 434 >gi|169666013|gb|ACA63664.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus purpureus] Length = 460 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLSSWGHMVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKGLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTAWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFTANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|310788906|gb|ADP24456.1| NADH dehydrogenase subunit 4 [Puntius brevis] Length = 442 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 38 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRSYITLLASLQTFLIMAFGATE 97 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 98 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLLQHSMGTL 157 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 158 SMLVL--QYSQPLQLNSWSHMVWWTGCLIAFLVKMPLYGIHLWLPKAHVEAPVAGSMVLA 215 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 216 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 274 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 275 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 334 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 335 FPLTAVWWFIANLANLALPPLPNLMGELMIISTLFNWSPWTILLTGLGTLITAGYSLYMF 394 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 395 LMSQRGPTP-NHIMGLQPYHTREHLLM 420 >gi|213136413|gb|ACJ43943.1| NADH dehydrogenase subunit 4 [Lissotriton vulgaris] Length = 459 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 211/367 (57%), Gaps = 12/367 (3%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVI 126 + F + ++ V IS L+VLT +L P L+S ++ N R Y+ +L+ +I Sbjct: 48 LSTFTNTYMSVGPISSPLLVLTCWLLPLMTLASQNHLKTNPLQRQRTYLAMLTLLQMSLI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AF + ++++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++V+ Sbjct: 108 IAFSATELVMFYIAFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLVL 167 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + S+I + M P Q + MW+A +F +K+P++ H WLP AHV+AP Sbjct: 168 QASIGSLSLILMNVME--PLMAQNYTNKIMWLACLLAFMVKMPLYGAHLWLPKAHVEAPV 225 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA ++LK+GGYG IR + L PL + P + L+L ++ SL+ M QTD+K Sbjct: 226 AGSMILAAVLLKLGGYGIIRISMILTPLTKEMSYPFMV-LALWGVVMTSLICMRQTDLKS 284 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG V GI + GA+ M+SHGL+SSALF + Y+R H+R + Sbjct: 285 LIAYSSVSHMGLVIAGILIQTPWSLTGAIILMISHGLISSALFCLANLNYERTHSRTLLL 344 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 G +P A ++ ++NM LP + GE +++S+F S ++ G +++A Sbjct: 345 VRGAQAALPLMATWWLLTNLSNMALPPSMNLWGELTIMVSLFNWSPWTIMITGIGTLITA 404 Query: 422 LYSLWLY 428 Y+L+++ Sbjct: 405 FYTLYMF 411 >gi|8573088|ref|NP_059576.1| NADH dehydrogenase subunit 4 [Sciurus vulgaris] gi|8347078|emb|CAB93994.1| NADH dehydrogenase subunit 4 [Sciurus vulgaris] Length = 459 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 200/355 (56%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S +++ + Y++ + L+ +I F + +++LF Sbjct: 59 DPLSTPLLILTAWLLPLMIMASQNHLKKESLVRKKLYILMLISLQLFLIMTFSASELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L +V + + T S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVVLVYI--QTSTGSLNF 176 Query: 194 IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I LY + P + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 ITSLYQSNILPLTWTNNMLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L P+ S P I LSL +I S V + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITTLLHPITSTMSYPFIL-LSLWGMIMTSSVCLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAIMIQTPWSFMGATALMVAHGLTSSMLFCLANTNYERIHSRTMILARGLQSILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP + IGE +I+S F SN VL ++++ALYSL++ Sbjct: 356 TTWWVLASLTNLALPPSINLIGELFIIVSTFSWSNVTIVLMGLNMLITALYSLYM 410 >gi|53686428|ref|YP_097059.1| NADH dehydrogenase subunit 4 [Eurycea bislineata] gi|51979823|gb|AAU20496.1| NADH dehydrogenase subunit 4 [Eurycea bislineata] Length = 455 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/386 (35%), Positives = 211/386 (54%), Gaps = 12/386 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +LG+D IS L+VLT +L P IL+S ++ N + Y+ +L++ +I AF S Sbjct: 53 NKYLGLDKISSPLLVLTCWLLPLMILASQNHLKNNPMRRQKIYISMLAILQTALILAFSS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFY+ FE +LIP +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYVTFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLFISTTQG 172 Query: 191 TSSIIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S+ L+ +SK F S +W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 SLSLNFLF-LSKEMFIMNSPNKLLWLGCLMAFMVKMPLYGAHLWLPKAHVEAPVAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR + PL + +I L+L I+ L+ QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGIIRVTMMFTPLTELSYPFII--LALWGILMTGLICTRQTDLKSLIAYSS 289 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GA+ M+SHGLVSSALF Y+R H+R + GL Sbjct: 290 VSHMGLVVAATLIQTPWSFTGAIILMISHGLVSSALFCLANTNYERTHSRTMLLARGLQT 349 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ + NM LP T+ GE +++S+F S +L G +++ Y+L + Sbjct: 350 TLPLLATWWLISNLLNMALPPTTNLWGELTIMVSLFYWSPWTILLTGLGTLITVAYTLHM 409 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERC 453 + G + S RE C Sbjct: 410 FITTQRG-HLPTHLNLSSPTSTREHC 434 >gi|75069941|sp|Q598S9|NU4M_CAPMR RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|62086702|dbj|BAD91794.1| NADH dehydrogenase subunit 4 [Caperea marginata] Length = 459 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 204/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +E+ + Y+ +VL++++I F + +++LF Sbjct: 59 DPLSTPLLILTMWLLPLMLMASQSHLLKESLTRKKLYVTMLIVLQTLLIMMFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T S+ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALTYL--QNTTGSLNF 176 Query: 195 --IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + + P +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LLLQHWTQPLSPTWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITFMLDPL-TEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL ++P Sbjct: 296 LVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRIMILARGLQISLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE L +MS+F SN L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELLTVMSIFSWSNPTIFLMGTNIVITALYSLYM 410 >gi|29570707|ref|NP_818822.1| NADH dehydrogenase subunit 4 [Sarcocheilichthys variegatus microoculus] gi|29501034|dbj|BAC67399.1| NADH dehydrogenase subunit 4 [Sarcocheilichthys variegatus microoculus] Length = 460 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S HL D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 SPHLATDPLSTPLLVLTCWLLPLMILASQNHIYPEPVSRQRLYITLLASLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQT 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W + +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYSQPMMLNSWGHKVWWASCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELIYPFII-LALWGIIMTGTICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTLALTGAGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + +L RE ++ Sbjct: 411 MFLMSQRGPVP-NHIMKLPPFHTREHLLM 438 >gi|260766553|gb|ACX50300.1| NADH dehydrogenase subunit 4 [Catostomus bernardini] Length = 460 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 135/360 (37%), Positives = 206/360 (57%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ + P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMMILQYSQPLALESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I S+F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFAANLANLALPPLPNLMGELMIITSLFSWSPWTIALTGVGTLITAGYSLYLF 412 >gi|538480|gb|AAA67402.1| presumptive protein 4 [Sceloporus grammicus] Length = 461 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 194/361 (53%), Gaps = 12/361 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + L VD IS L+VL+ +L P L+S ++ R +++ +L++ +I F Sbjct: 52 FSTPQLMVDPISAPLLVLSCWLLPLMALASQNHLKLEPMYRKRVFLMTLSILQTFLILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVW-GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++ LFYI FEA+LIP +II W ER+ A F YT S+ +L AI+ + Sbjct: 112 TASNLTLFYIMFEATLIPTLIIITRWENQQERLTAGTYFLFYTLASSLPLLIAILYFSTK 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 SSII L P W MW A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 NHHSSIILLQLTQ--PQLTNTWSNVFMWAACLLAFMVKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L P+ + + P + L+L I+ S + M QTD+K LIA Sbjct: 230 MVLAAILLKLGGYGIMRITTLLMPMTPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GAM M++HGL SS LF Y+R HTR + G Sbjct: 289 YSSVSHMGLVIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 P + ++ + NM LP + +GE L+I+S+F SN +L G +++A YS Sbjct: 349 FQIIFPLMSTWWLMANLTNMALPPSINLMGELLIIVSLFNWSNATILLTGLGTLITAAYS 408 Query: 425 L 425 L Sbjct: 409 L 409 >gi|295641116|gb|ADG22663.1| NADH dehydrogenase subunit 4 [Mustela kathiah] Length = 459 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 131/388 (33%), Positives = 208/388 (53%), Gaps = 29/388 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S + + Y+ ++L+ +I +F + ++++F Sbjct: 59 DSLSAPLLMLTTWLLPLMLMASQYHLSNETLTRKKLYITMLIMLQLFLIVSFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +I+ WG +ER+ A F YT GS+ +L A++ W + ++ Sbjct: 119 YILFEATLVPTLIIVTRWGNQTERLNAGLYFLFYTLVGSLPLLIALL---WIQNNMGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 L-------LIIQYWVQPLSNSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL S Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITVLLNPLTS-YMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIMAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T +GE V+MS F SN VL + ++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMSSFSWSNITIVLMGVNITITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KYTHHIKNIKPSFTREN 434 >gi|299758255|dbj|BAJ10004.1| NADH dehydrogenase subunit 4 [Stolephorus waitei] Length = 460 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 139/398 (34%), Positives = 216/398 (54%), Gaps = 15/398 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSSPLLVLTCWLLPLMILASQNHTAHEPISRQRMYITLLTSLQAFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 VIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLALQASTGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L FP ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMITLTFNQPFPLLCWADKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR L PL + P I L+L I+ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRITPVLDPLTKEMAYPFIV-LALWGIVMTGTICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI + G+ GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 294 HMGLVASGILTQTPWGLTGAIILMIAHGLTSSALFCLANTSYERTHSRTMALARGMQTLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+++ Sbjct: 354 PLTATWWFIANLANLALPPLPNLMGEMKIITTMFNWSPWSIILTGLGTLITASYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 G + + L RE ++ PI +LTV Sbjct: 414 MTQRGQTPTH-ITALPPYHTREHLLIALHLIPILLLTV 450 >gi|169666029|gb|ACA63672.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus xunlensis] Length = 460 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW---MWIA-FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W +W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWGAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVTLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTSWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAAWWFTANLANLALPPLPNLMGELMIITTLFNWSPWTILLTDLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|84488590|ref|YP_448955.1| NADH dehydrogenase subunit 4 [Cervus elaphus] gi|84095041|dbj|BAE66709.1| NADH dehydrogenase subunit 4 [Cervus elaphus] Length = 459 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 205/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSAPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LVLQYWVQPLPNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYSLYM 410 >gi|310788910|gb|ADP24458.1| NADH dehydrogenase subunit 4 [Puntius sp. CBM ZF-11245] Length = 460 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRSYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLLQHSMG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMLVL--QYSQPLQLNSWSHMVWWTGCLIAFLVKMPLYGIHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIISTLFNWSPWTILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMSQRGPTP-NHIMGLQPYHTREHLLM 438 >gi|317134229|ref|YP_004123566.1| NADH dehydrogenase subunit 4 [Acheilognathus somjinensis] gi|223951308|gb|ACN29599.1| NADH dehydrogenase subunit 4 [Acheilognathus somjinensis] Length = 460 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPMSRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYAQPLMLNSWSDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S T L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPTTIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPAP-NHIIKLSPFHTREHLLM 438 >gi|226968595|ref|YP_002808546.1| NADH dehydrogenase subunit 4 [Chiloscyllium plagiosum] gi|226247227|gb|ACO40342.1| NADH dehydrogenase subunit 4 [Chiloscyllium plagiosum] Length = 459 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 211/361 (58%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L +D +S+ L++LT +L P I++S + R Y+ + L++ +I AF + Sbjct: 54 NQYLAMDPLSMPLLILTCWLLPLMIMASQNHMYPEPIIRQRIYLTLLISLQAFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLMGSLPLLIALLTLQNSLG 173 Query: 191 T-SSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S +I Y+ ++ ++W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMMIMQYSQPSELLLWADKFW-WTACIMAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R ++ L PL + P I L++ II S + + QTD+K LIAYSS Sbjct: 233 AAILLKLGGYGMMRIIIMLNPLTKELAYPFII-LAIWGIIMTSSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V I M GA+ M++HGL+SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVVGAILIQMPWSFAGAITLMIAHGLISSALFCLANTNYERTHSRTLLLARGIQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + +AN+ LP T +GE L+I S+F SN ++ GV+++A YSL++ Sbjct: 352 ALPLMTTWWFLTNLANLALPPTPNLMGELLIISSLFNWSNWTIIMTGLGVLITASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|119360717|ref|YP_913688.1| NADH dehydrogenase subunit 4 [Pangio anguillaris] gi|119225411|dbj|BAF41762.1| NADH dehydrogenase subunit 4 [Pangio anguillaris] Length = 460 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 211/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NQYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPITRQRMYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVLQYSQPLALNSWGHKIWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A+ +AN+ LP +GE +I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAIWWFTANLANLALPPLPNLMGELTIITALFNWSPWTIALTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMTQRGPTPTH-IMGLSPFHTREHLLM 438 >gi|119360591|ref|YP_913376.1| NADH dehydrogenase subunit 4 [Tribolodon nakamurai] gi|119225061|dbj|BAF41437.1| NADH dehydrogenase subunit 4 [Tribolodon nakamurai] Length = 460 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINSEPVSRQRLYIMLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLTALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYAQPLTLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAMWWFIANLANLALPPLPNLMGELMIITTLFDWSPWTIALTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-IMKLPPFHTREHLLM 438 >gi|5565824|gb|AAD45213.1| NADH dehydrogenase subunit 4 [Marmota bobak] Length = 408 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/355 (37%), Positives = 203/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + QE + Y++ + L+ +I F + ++++F Sbjct: 45 DPLSSPLLILTAWLLPLMIMASQSHLTQEPLIRKKLYILMLISLQLFLIMTFSATELIMF 104 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K T S Sbjct: 105 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALIYI--QKSTGSLNF 162 Query: 194 IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 II +Y S S + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 163 IISMYQSSILSMSWTNHILWLACIMAFMVKMPLYGLHLWLPKAHVEAPVAGSMVLAAILL 222 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG IR L P+ S P I LSL +I S + + Q D+K LIAYSS++HM Sbjct: 223 KLGGYGMIRISTFLHPVTSNMAYPFIM-LSLWGMIMTSSICLRQADLKSLIAYSSVSHMA 281 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 282 LVIVAIMIQTPWSFMGATTLMVAHGLTSSMLFCLANTNYERIHSRTMTLARGLQSILPLM 341 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ T+ N+ LP + IGE +IM+ F SN +L ++++ALYSL++ Sbjct: 342 ATWWILATLTNLALPPSINLIGELFIIMASFTWSNISIILTGLNMLVTALYSLYM 396 >gi|213136231|gb|ACJ43774.1| NADH dehydrogenase subunit 4 [Paramesotriton caudopunctatus] Length = 459 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 140/413 (33%), Positives = 225/413 (54%), Gaps = 13/413 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + + VD S L+VLT +L P L+S + ++ N R Y+I +L++ +I AF Sbjct: 51 FTNMLMSVDPTSSPLLVLTCWLLPLMTLASQQHLKTNPLPRQRTYLIMLTLLQASLIIAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S ++++FYI FEA+LIP +II WG ER+ A F YT GS+ +L A++V+ Sbjct: 111 SSTELIMFYIAFEATLIPTLIIITRWGNQVERLNAGTYFLFYTLAGSLPLLVALLVLQNC 170 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + S+ Y M P +Q + +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 IGSLSLALFYTME--PMMLQTYASKILWLACLLAFMVKMPLYGAHLWLPKAHVEAPVAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR L P+ + P + L+L ++ SL+ M QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGIIRITTILTPMTKEMSYPFMI-LALWGVVMTSLICMRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V I + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 288 YSSVSHMGLVIAAIMIQTPWSITGAVILMVSHGLISSALFCLANMNYERTHSRTLLLVRG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P A ++ ++NM LP + GE +++S+F S ++ G +++A Y+ Sbjct: 348 AQTMLPLMATWWLITNLSNMALPPSMNLWGELTIMVSLFNWSPWTILITGAGTLITASYT 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 L+++ G + + + RE ++ + + P I TFS Sbjct: 408 LYMFLMTQRGPAP-NHLNPMNPSHTREHFLMTMHLAPMLLLILKPALISGTFS 459 >gi|255077683|gb|ACU00322.1| NADH dehydrogenase subunit 4 [Pseudobranchus axanthus] Length = 456 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 203/355 (57%), Gaps = 7/355 (1%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 L D S L+VLT +L P +++S ++ R Y+I ++L+ +I AF + ++ Sbjct: 56 LAYDQFSSPLLVLTCWLLPLMVMASQNHMKSYPINRQRSYLIMLIMLQISLIIAFSTTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A+++M + S Sbjct: 116 ILFYISFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALMMMKNYMGSLS 175 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++ L +S F + + +W A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 176 MMILEMLSPMSF-MNFMLWTACLIAFMVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLK 234 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG IR + L PL + P I L+L +I L+ + QTD+K LIAYSS++HMG Sbjct: 235 LGGYGIIRVTMLLTPLMKELSYPFII-LALWGVIMTGLICLRQTDLKSLIAYSSVSHMGL 293 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V G GA+ M++HGL+SSALF + Y+R HTR + G P Sbjct: 294 VISASIIQSPWGYTGAIILMVAHGLISSALFCLANINYERSHTRTLMLIRGAQTIFPLMM 353 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + + NM LP T GE ++IMS++ S ++ G +++ALYSL+++ Sbjct: 354 AWWFIANLFNMALPPTINLWGELIIIMSLYNWSMWTILITGLGTLITALYSLYMF 408 >gi|213136035|gb|ACJ43592.1| NADH dehydrogenase subunit 4 [Cynops orphicus] Length = 459 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 209/364 (57%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAF 129 F + + VD S L+VLT +L P ++S K ++ N R Y+I +L++ +I AF Sbjct: 51 FTNMLMSVDQTSSPLLVLTCWLLPLMTMASQKHLKTNSLPRQRTYLIMLTLLQASLIFAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S ++++FYI FE +LIP VII WG ER+ A F YT GS+ +L A++V+ Sbjct: 111 SSTELIMFYIAFETTLIPTLVIITRWGNQVERLNAGTYFLFYTLAGSLPLLIALLVLQNS 170 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + S+ + M P +Q + +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 LGSLSLALINIME--PMVLQNYSNKTLWLACLLAFMVKMPLYGAHLWLPKAHVEAPVAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR L P+A + P + L+L ++ SL+ M QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGIIRITTILTPMAKEMSYPFMI-LALWGVVMTSLICMRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V I GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 288 YSSVSHMGLVIAAIMIQTPWSTTGAVILMISHGLISSALFCLANINYERTHSRTLLLVRG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P A ++ ++NM LP + GE +++S+F S ++ G +++A Y+ Sbjct: 348 AQAMLPLMATWWLIANLSNMALPPSMNLWGELTIMVSLFNWSPWTILITGTGTLITASYT 407 Query: 425 LWLY 428 L+++ Sbjct: 408 LYMF 411 >gi|299758241|dbj|BAJ10001.1| NADH dehydrogenase subunit 4 [Stolephorus chinensis] Length = 460 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 139/398 (34%), Positives = 216/398 (54%), Gaps = 15/398 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSSPLLVLTCWLLPLMILASQNHTAHEPISRQRMYITLLTSLQAFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 VIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLALQASTGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L FP ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMITLTFNQPFPLLCWADKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR L PL + P I L+L I+ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRITPILDPLTKEMAYPFIV-LALWGIVMTGTICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI + G+ GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 294 HMGLVASGILTQTPWGLTGAIILMIAHGLTSSALFCLANTSYERTHSRTMALARGMQTLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+++ Sbjct: 354 PLTATWWFIANLANLALPPLPNLMGEMKIITTMFNWSPWSIILTGLGTLITASYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV----YPIAVLTV 463 G + + L RE ++ PI +LTV Sbjct: 414 MTQRGQTPTH-ITALPPYHTREHLLIALHLVPILLLTV 450 >gi|163785043|ref|ZP_02179768.1| NADH dehydrogenase I chain M [Hydrogenivirga sp. 128-5-R1-1] gi|159879688|gb|EDP73467.1| NADH dehydrogenase I chain M [Hydrogenivirga sp. 128-5-R1-1] Length = 289 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/284 (46%), Positives = 181/284 (63%), Gaps = 16/284 (5%) Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSS 61 + P+L++ LP + ++ F S R +++ IS + F S ++ +D + Sbjct: 9 SFPWLTVSIVLPLIAAGILFFLS-----ERFAKPISIVISAVVFAISTWMLFAYDYSHYA 63 Query: 62 FQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENFREYMIAFL 119 Q E Y+WI F SY +GVD +S+ + LT F I W +I++ +EY IAFL Sbjct: 64 IQFYEKYNWIPQFGVSYEVGVDALSLTMYWLTAL--SFLISFIWSVNIKKRVKEYFIAFL 121 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179 VLE+ IG F++ DM+ FYIF+EA LIPMF+IIGVWG +ERIYAA KFF+YTFFGS+F+L Sbjct: 122 VLEAACIGVFVAWDMVWFYIFWEAMLIPMFLIIGVWGYAERIYAATKFFIYTFFGSLFLL 181 Query: 180 FAIVVM-CWE-----KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 +V M ++ K ++S DL A PF+++ ++ FAIK+PM+PFHTWLP Sbjct: 182 IGVVGMYVYQYFHTGKLSTSYFDL-ANLGLPFNLEIIFFLLLALGFAIKVPMWPFHTWLP 240 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 AHVQAPTAGSV LA ++LKMG YG +RF LP FP AS+YF PV Sbjct: 241 AAHVQAPTAGSVILAAVLLKMGTYGFVRFSLPWFPEASKYFIPV 284 >gi|312233475|ref|YP_004021874.1| NADH dehydrogenase subunit 4 [Cervus elaphus songaricus] gi|309399290|gb|ADO78923.1| NADH dehydrogenase subunit 4 [Cervus elaphus songaricus] Length = 459 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T +GE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLVGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|295442708|ref|YP_003595314.1| NADH dehydrogenase subunit 4 [Cuora galbinifrons] gi|190148573|gb|ACE63317.1| NADH dehydrogenase subunit 4 [Cuora galbinifrons] Length = 458 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/404 (32%), Positives = 219/404 (54%), Gaps = 16/404 (3%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVI 126 + F + +LGVD IS ++L+ +LTP I++ ++ R ++ ++L+ +I Sbjct: 48 LTIFSNCYLGVDQISAPFLILSCWLTPMMIMAGQNNLIMEPTPRKRTFIFITILLQISLI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AF + ++++F+I FE++L+P VII WGG ER+ A F YT GS+ +L A++ Sbjct: 108 LAFSTTELIMFFIAFESTLLPTLVIITRWGGQMERLNAGIYFLFYTLIGSLPLLVALLTT 167 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 T SI L +S +P ++ W W+A F +F IK+P++ H WLP AHV+AP Sbjct: 168 QTYSGTLSICTL-QLSTYPNTMNPWTHTMWWLALFTAFMIKMPLYGLHLWLPKAHVEAPI 226 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA ++LK+GGYG IR + L P P + L+L +I + + QTD+K Sbjct: 227 AGSMILAAVLLKLGGYGIIRMTMTLAPPLKMLSYPFMM-LALWGVIMTGFICLRQTDLKS 285 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+ HMG V + + GA+ M++HGL SS LF Y+R ++R + Sbjct: 286 LIAYSSVGHMGLVIAATLTRTEWACTGAITLMIAHGLTSSMLFCLANTNYERTNSRTLLL 345 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 + +P + ++ NM LP T +GE +I+S+F SN ++ G +++A Sbjct: 346 ARNMQLLLPLMGLWWFSASLTNMALPPTINLMGELTIIISLFSWSNITILMTGLGTLMAA 405 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV----YPIAVL 461 Y+L++ +G + ++ + RE ++ P+A+L Sbjct: 406 TYTLYMLITTQWGETP-SHMKTIPPTHTREHLLMMFHTLPMALL 448 >gi|119360286|ref|YP_913480.1| NADH dehydrogenase subunit 4 [Alburnus alburnus] gi|119225173|dbj|BAF41541.1| NADH dehydrogenase subunit 4 [Alburnus alburnus] Length = 460 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 144/430 (33%), Positives = 225/430 (52%), Gaps = 21/430 (4%) Query: 42 TINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSY-------HLGVDGISILLVVLTTF 94 TI + S ++W+ S +I W+ + +L D +S L+VLT + Sbjct: 14 TIWLVPSKWLWAATTTHSLSIALISLT-WLKWTSETGWATSGSYLATDPLSTPLLVLTCW 72 Query: 95 LTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 L P IL+S I R Y+ L++ +I AF + ++++FYI FEA+LIP + Sbjct: 73 LLPLMILASQNHINPEPVSRQRLYITLLASLQTFLIMAFGATEIIMFYIMFEATLIPTLI 132 Query: 151 IIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 II WG +ER+ A F YT GS+ +L A++++ ++ T ++ L P + Sbjct: 133 IITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLL--QQSTGTLSMLVIQYTQPMLLDS 190 Query: 210 W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 W W +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R ++ Sbjct: 191 WGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMMVM 250 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 L PL+ + P I L+L II + + QTD+K LIAYSS++HMG V GI G Sbjct: 251 LDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWG 309 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 GA+ M++HGLVSS LF Y+R H+R + GL P AV + +AN+ Sbjct: 310 FSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMIFPLTAVWWFIANLANLA 369 Query: 386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 LP +GE ++I ++F S L G +++A YSL+++ G S + +L Sbjct: 370 LPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITAGYSLYMFLMSQRGPSPAH-IMKLA 428 Query: 446 DLSLRERCMV 455 RE ++ Sbjct: 429 PFHTREHLLM 438 >gi|53686582|ref|YP_097085.1| NADH dehydrogenase subunit 4 [Rhyacotriton variegatus] gi|51979851|gb|AAU20522.1| NADH dehydrogenase subunit 4 [Rhyacotriton variegatus] Length = 453 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 209/358 (58%), Gaps = 12/358 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 +G+D +S L++LT +L P L+S ++ N R Y + + L+ +I AF S ++ Sbjct: 56 MGLDYVSAPLLILTCWLLPLMTLASQNHLKNNPTTRQRTYTLMLVTLQVSLILAFSSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG +ER+ A F YT GS+ + ++M + S Sbjct: 116 ILFYISFETTLIPTLIIITRWGNQNERLSAGTYFLFYTLMGSLPL-LIALLMLYSYNGSL 174 Query: 194 IIDLYAMSKFPFSIQ--YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++++ ++ PF ++ Y +W A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 175 SLNMFIIN-VPFVLENSYVLWFACMLAFMVKMPLYGMHLWLPKAHVEAPIAGSMILAAVL 233 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFF-LSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 LK+GGYG +R + L PL + P +F L+L ++ + M QTD+K LIAYSS++H Sbjct: 234 LKLGGYGMMRITMLLTPLMKEL--PYLFIILALWGVLMTGFICMRQTDLKALIAYSSVSH 291 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I GAM M++HGL+SSALF + Y+R H+R + G+ MP Sbjct: 292 MGLVVAAILIQTPWSFTGAMILMIAHGLISSALFCLANMNYERTHSRTMLLTRGMQTIMP 351 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++ ++NM +P T GE +I+S+F SN ++ G +++A+Y+L+++ Sbjct: 352 LMMMWWLLVNLSNMAIPPTLNLWGELTIIISLFNWSNWTILMTGLGTLITAMYTLYMF 409 >gi|126215497|ref|YP_001054735.1| NADH dehydrogenase subunit 4 [Labracinus cyclophthalmus] gi|125625423|dbj|BAF46788.1| NADH dehydrogenase subunit 4 [Labracinus cyclophthalmus] Length = 460 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAF 129 F + +L D +S L+VLT +L P IL+S + + R Y+ L+ +I AF Sbjct: 52 FMNTYLATDPLSSPLLVLTCWLLPLMILASQNHMTLEPENRQRMYITLLTSLQMFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEIIMFYVMFEATLIPTLVIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNN 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L A+ + + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLTLQYSPALQLLSYGDKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL S+ P I L+L ++ + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILTILDPLTSKLCYPFII-LALWGVVMTGSICLNQTDLKALIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI + G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILTQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QTILPLMATWWFIASLANLALPPLPNLMGELMIITSLFDWSPWTLALTGTGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|219524225|ref|YP_002456368.1| NADH dehydrogenase subunit 4 [Lama guanicoe] gi|186968991|gb|ACC97313.1| NADH dehydrogenase subunit 4 [Lama guanicoe] Length = 459 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/391 (33%), Positives = 212/391 (54%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DALSAPLLVLTTWLLPLMLIASQSHLSKEPLTRKKLYITMLILLQVLLIMTFTASELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGSYFLFYTLAGSLPLLVALVYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 M QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 FLIM-------QYWNQPLMDSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL ++Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRLTAMLNPL-TEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATTLMVAHGLTSSMLFCLANTNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A+ ++ ++ N+ LP T +GE VIM+ F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAMWWLLASLTNLALPPTINLLGELFVIMASFSWSNITIILMGANMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + + +K RE ++ Sbjct: 408 LYMLIMTQRG-NHTYHINNIKPTYTRENSLM 437 >gi|14602235|ref|NP_148747.1| NADH dehydrogenase subunit 4 [Tarsius bancanus] gi|14582825|gb|AAK69667.1|AF348159_10 NADH dehydrogenase subunit 4 [Tarsius bancanus] Length = 459 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/399 (33%), Positives = 218/399 (54%), Gaps = 17/399 (4%) Query: 69 HWIDYFCSYHLG--VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLE 122 HW + ++ L D +S L++LTT+L P +++S + + + Y+ ++L+ Sbjct: 44 HWYNTNMNFSLTFFTDSLSTPLLILTTWLLPLMVMASQNHLSKESLGRKKLYISMLVMLQ 103 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFA 181 +I F + +++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A Sbjct: 104 IFLIMTFTATELVLFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLIA 163 Query: 182 IVVM-----CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 ++ ++S+I L + + +I +W+A +F +K+P++ H WLP AH Sbjct: 164 LIYTQNFMGTLNMASNSLIALNIPNSWSNNI---LWLACMMAFMVKMPLYGLHLWLPKAH 220 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+AP AGS+ LA I+LK+GGYG +R + L PL ++Y A LSL +I S + + Q Sbjct: 221 VEAPIAGSMVLAAILLKLGGYGMMRMTIILNPL-TEYMAYPFLMLSLWGMIMTSSICLRQ 279 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K LIAYSS++HM V + I GA M++HGL SS LF Y+R+H+ Sbjct: 280 TDLKSLIAYSSVSHMALVIVAILIQTPWSFIGATVLMIAHGLTSSLLFCLANTNYERIHS 339 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R + GL +P A ++ ++ N+ LP T +GE ++M+ F S+ +L Sbjct: 340 RTMTLARGLQTLLPLMATWWLLASLTNLALPPTINLVGELFIMMASFSWSHLTIILMGLN 399 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++++ALYSL++ G + +K RE ++ Sbjct: 400 MLITALYSLYMLTMTQRG-KYTYHINNIKPPFTRENTLM 437 >gi|53686512|ref|YP_097124.1| NADH dehydrogenase subunit 4 [Plethodon petraeus] gi|51979893|gb|AAU20561.1| NADH dehydrogenase subunit 4 [Plethodon petraeus] Length = 449 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 219/388 (56%), Gaps = 17/388 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++G+D IS L+ LT +L P +L+S ++ N + Y+ VL+ +I AF S Sbjct: 53 NKYMGLDQISSPLLTLTCWLLPMMVLASQNHLKNNPLSRQQMYISMLTVLQITLILAFSS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 113 TELILFYIAFEATLVPTLIIITRWGNQTERLNAGMYFLFYTLAGSLPLLIALLSLYHSTG 172 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + SI LYA F ++ +W+ +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 173 SLSINFLYA---FHQTMNKILWLGCLTAFMVKMPLYGAHLWLPKAHVEAPVAGSMILAAV 229 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + +F + + P I L+L I+ SL+ QTD+K LIAYSS++H Sbjct: 230 LLKLGGYGMIRVMF-MFSPSIEISYPFII-LALWGILMTSLICTRQTDLKSLIAYSSVSH 287 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I + GA+ M+SHG++SSALF Y+R H+R + GL +P Sbjct: 288 MGLVVAAILIQTPWSLTGAVILMVSHGMISSALFCLANTTYERTHSRTLLLTRGLQMALP 347 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++ NM LP T GE +++ S+F S ++A G +L+A Y++ ++ Sbjct: 348 LMAAWWLLLSLFNMALPPTPNLWGELVIMASLFNWSPWSIIIAGLGTLLTAAYTMHMF-- 405 Query: 431 VVFGVSKCEKVQQLKDLS---LRERCMV 455 + + + LK S RE C++ Sbjct: 406 --LMTQRGQLPKHLKRTSPNFTREHCLL 431 >gi|119360745|ref|YP_913727.1| NADH dehydrogenase subunit 4 [Misgurnus nikolskyi] gi|119225453|dbj|BAF41801.1| NADH dehydrogenase subunit 4 [Misgurnus nikolskyi] Length = 460 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVFLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLSSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A+ + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAIWWFIANLANLALPPLPNLMGELTIISALFNWSPWTILLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMTQRGPTPTH-ITGLPPFHTREHLLM 438 >gi|84579569|dbj|BAE72156.1| NADH dehydrogenase subunit 4 [Oryzias latipes] gi|253960417|dbj|BAH84902.1| NADH dehydrogenase subunit 4 [Oryzias latipes] Length = 460 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/357 (37%), Positives = 205/357 (57%), Gaps = 14/357 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + + N + I+ LV L+ ++ AF + +M Sbjct: 57 IATDPLSTPLLVLTCWLLPLMILASQNHMAKEPINRQRTYISLLVSLQIFLVLAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL--QNSTGS 174 Query: 194 IIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + L P + ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSFLTTQFFPPLQLHTQASKFW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A +FT+AN+ LP +GE ++I S+F SN +L G +++A YSL Sbjct: 353 LPLLATWWFLFTLANLALPPLPNLMGELMIITSLFNWSNWTLLLTGAGTLITASYSL 409 >gi|198400385|ref|YP_002221337.1| NADH dehydrogenase subunit 4 [Psilorhynchus homaloptera] gi|63081845|gb|AAY30706.1| NADH dehydrogenase subunit 4 [Psilorhynchus homaloptera] Length = 460 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NTYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPIARQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQT 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILPFSQPLNLSSWGHTAWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 VVFPLTATWWFFANLANLALPPLPNLMGELMIITTLFNWSPWTIILTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L RE ++ Sbjct: 411 MFLMSQRGPTP-NHITKLPPFHTREHLLL 438 >gi|63025136|ref|YP_232842.1| NADH dehydrogenase subunit 4 [Cervus nippon centralis] gi|62751080|dbj|BAD95771.1| NADH dehydrogenase subunit4 [Cervus nippon centralis] Length = 459 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|325511720|gb|ADZ23048.1| NADH dehydrogenase subunit 4 [Orcaella brevirostris] Length = 459 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/384 (34%), Positives = 210/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L++++I F ++++++F Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLIMLQTLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YITFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWTQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSSI+HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSISHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGVNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L +S RE ++ Sbjct: 415 QRG-KHTHHINNLTPISTREHTLM 437 >gi|255506260|ref|YP_003097097.1| NADH dehydrogenase subunit 4 [Erimyzon oblongus] gi|254939422|dbj|BAH86729.1| NADH dehydrogenase subunit 4 [Erimyzon oblongus] Length = 460 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/390 (35%), Positives = 219/390 (56%), Gaps = 15/390 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L +++++ ++ Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVSLLLL---QQ 170 Query: 191 TSSIIDLYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T+ + ++ + P +++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 TTGTLSMFILQYSQPLTLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL Sbjct: 350 QVIFPLTAVWWFIANLANLALPPLPNLMGEMMIITTLFNWSPWTIILTGTGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +L+ G + + L RE ++ Sbjct: 410 YLFLMSQRGPTP-NHITGLPPFHTREHLLM 438 >gi|223976144|ref|YP_002601081.1| NADH dehydrogenase subunit 4 [Lama glama] gi|223972341|dbj|BAH23376.1| NADH dehydrogenase subunit 4 [Lama glama] Length = 459 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/391 (33%), Positives = 212/391 (54%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DALSAPLLVLTTWLLPLMLIASQSHLSKEPLTRKKLYITMLILLQVLLIMTFTASELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGSYFLFYTLAGSLPLLVALVYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 M QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 FLIM-------QYWNQPLMDSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL ++Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRLTAMLNPL-TEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATTLMVAHGLTSSMLFCLANTNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A+ ++ ++ N+ LP T +GE VIM+ F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAMWWLLASLTNLALPPTINLLGELFVIMASFSWSNITIILMGANMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + + +K RE ++ Sbjct: 408 LYMLIMTQRG-NHTYHINNIKPTYTRENSLM 437 >gi|254055027|ref|YP_003058361.1| NADH dehydrogenase subunit 4 [Oryzias luzonensis] gi|253960403|dbj|BAH84889.1| NADH dehydrogenase subunit 4 [Oryzias luzonensis] Length = 460 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/358 (37%), Positives = 202/358 (56%), Gaps = 16/358 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P +L+S + + R Y+ + L+ +I AF + +M Sbjct: 57 MATDTLSTPLLVLTCWLLPLMVLASQNHMAQEPTNRQRTYISLLISLQIFLILAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ + ++ Sbjct: 117 IMFYIMFEATLIPTLVIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL---QNSTG 173 Query: 194 IIDLYAMSKFPF------SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + FP + ++W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSFLTTQFFPLLQLHTEASKFW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRIIIILEPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGFTGALVLMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A VFT+AN+ LP +GE ++I S+F S L GV+++A YSL Sbjct: 352 VLPLLATWWFVFTLANLALPPLPNLMGELMIISSLFNWSGWSLALTGTGVLITASYSL 409 >gi|260766559|gb|ACX50304.1| NADH dehydrogenase subunit 4 [Catostomus insignis] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 207/362 (57%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVNRQRLYISLLASLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ + P +++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMMILQYSQPLALESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV +AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFAANLANLALPPLPNLMGELMIITSLFSWSPWTIALTGVGTLITAGYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|270267430|ref|YP_003331129.1| NADH dehydrogenase subunit 4 [Proedromys sp. BBH-2008] gi|213516899|gb|ACJ49880.1| NADH dehydrogenase subunit 4 [Proedromys liangshanensis] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/398 (34%), Positives = 223/398 (56%), Gaps = 19/398 (4%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLDML 135 D +S L+VLTT+L P +L+S I+ ++ ++ I+ LV L++++I F + +++ Sbjct: 57 SADPLSAPLLVLTTWLLPLMLLASQNHIKKEPDHSKKLYISLLVTLQALLIMTFSANELI 116 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FY+ FEA+LIP VII WG +ER+ A F YT GSI +L A+ ++ T ++ Sbjct: 117 MFYVLFEATLIPTLVIITRWGNQTERLNAGIYFLFYTLVGSIPLLIALFF--FQNSTGTL 174 Query: 195 -IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 L ++ P Q W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 NFPLMTLNTLPMD-QTWSNNILWLACMMAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG +R + L P+ ++Y A LSL +I S + + QTD+K LIAYSS++ Sbjct: 234 ILLKLGGYGMMRVSMTLDPM-TKYMAYPFILLSLWGMIMTSSICLRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HM V I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 293 HMALVIAAIMIQTPWSFMGATALMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQTVF 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A ++ ++AN+ LP T IGE ++ +S+F S+ VL ++++++YS+++ Sbjct: 353 PLMATWWIMASLANLALPPTINLIGELMITVSLFSWSSPSIVLLGSNILITSIYSIYMIV 412 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 413 TTQRG-KLTNHMNNLQPSHTRESTLMTLHILPLILLTI 449 >gi|169666027|gb|ACA63671.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus xunlensis] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW---MWIA-FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W +W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWGAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVTLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTSWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAAWWFTANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|146221441|gb|ABQ11841.1| NADH dehydrogenase subunit 4 [Iphiteon panicea] Length = 472 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 141/400 (35%), Positives = 234/400 (58%), Gaps = 6/400 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 S L +D +S +L+ LT L +L S K+I M+ ++ AF + ++ Sbjct: 75 STRLTIDTLSTILMTLTALLILTSLLISEKTIYHTHTTLMLCLFTTLLILFLAFTTSSLI 134 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT--S 192 FYI FE+S+IP+ +IIG+WG E+I A Y F LYT GS+ + AI+++ + T + Sbjct: 135 NFYITFESSVIPLIIIIGLWGSRKEKIRATYYFLLYTITGSLPLFIAILILHNKTGTFNA 194 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++I + + P Q +++ F +FAIK P+ P+H WLP AHV+AP GS+ LAGI+L Sbjct: 195 TLIQHQTIDQQP---QLLLFLGLFLAFAIKTPLIPWHAWLPLAHVEAPAIGSILLAGILL 251 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+G YG IRF +P+ + + AP+I +S+I++ ASL S+ Q DIK++IAYSSIAHMG Sbjct: 252 KLGTYGFIRFTIPILTHTTTFIAPIIITISIISMWLASLNSLRQNDIKRIIAYSSIAHMG 311 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 +T FS +GA+ M+SHGL SS LF V +Y+R +R + ++ G + P Sbjct: 312 IITAACFSTNHISTKGAIILMISHGLTSSTLFLLVSCLYERHKSRLLKSFQGSSYTTPTL 371 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + + ++ +A+M PGT+ FIGE+L ++ +++ ++++++ ++++ Y L LY ++ Sbjct: 372 SSLTIIAALAHMSTPGTTNFIGEYLCLVGLWELHPSISIISIASIIITTAYLLLLYIQIT 431 Query: 433 FGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +++DLS +E + + GI P PI Sbjct: 432 SSKPPIYTKYKIQDLSRQEIQATLTLTTPNIAIGIIPYPI 471 >gi|296905337|gb|ADH84031.1| NADH dehydrogenase subunit 4 [Schistura fasciolata] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHIYPEPVTRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLL--QQTTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLNSWGHNIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P + L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFVI-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S V+ G +++A YSL+L+ Sbjct: 353 FPLTAAWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIVITGIGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + ++ L RE ++ Sbjct: 413 LMSQRGPAP-NHIKGLPPFHTREHLLM 438 >gi|126215469|ref|YP_001054889.1| NADH dehydrogenase subunit 4 [Halichoeres melanurus] gi|126143616|dbj|BAF47350.1| NADH dehydrogenase subunit 4 [Halichoeres melanurus] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/358 (36%), Positives = 204/358 (56%), Gaps = 12/358 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDML 135 G+D +S L+VL+ +L P I++S + + R Y+ ++L+S +I AF + ++L Sbjct: 58 GIDPLSSPLLVLSCWLLPLMIIASQSHMASEPVQRQRLYITLMVLLQSSLILAFTATEVL 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 LFY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ + T S+ Sbjct: 118 LFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIL--QNTTGSL 175 Query: 195 IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 L + P S+ W W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 SMLTLLYNQPLSLVNWGDNFWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L+ L PL P I L+L ++ + + QTD+K LIAYSS+ H Sbjct: 236 LLKLGGYGMMRVLIVLNPLTKDLAYPFIV-LALWGVVMTGTICLRQTDLKSLIAYSSVGH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI + G GA+ M++HGL SSALF Y+R HTR + GL +P Sbjct: 295 MGLVVAGILAQTSWGFTGALVLMIAHGLTSSALFCLANTNYERTHTRTMVLARGLQTALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + T+AN+ LP + E VI +++ S +L G +++A YSL+++ Sbjct: 355 LMAAWWFIATVANLALPPLPNLMAELTVISGMWKWSWWTIILTGAGTLITAGYSLYMF 412 >gi|25057952|ref|NP_740162.1| NADH dehydrogenase subunit 4 [Arcos sp. KU-149] gi|25006176|dbj|BAC23783.1| NADH dehydrogenase subunit 4 [Arcos sp. KU-149] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/394 (34%), Positives = 216/394 (54%), Gaps = 17/394 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 + + ++ D +S L++LT +L P IL+S R +++ ++L++ +I AF Sbjct: 52 YSNSYMATDPLSTPLLILTCWLLPLMILASQNHTSTEPMVRKRLFIMLLILLQAFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++L+FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 112 SATEILMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLAL--- 168 Query: 189 KKTSSIIDLYAM------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 +K++ + L M S FS + W W A +F +K+P++ H WLP AHV+AP A Sbjct: 169 QKSAGTLSLLTMDFMASASLTSFSNKLW-WAACLIAFLVKMPLYGAHLWLPKAHVEAPIA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R L PL+++ P I L+L I+ S + M QTD+K L Sbjct: 228 GSMVLAAVLLKLGGYGMMRITTTLGPLSTELSYPFII-LALWGIVMTSSICMRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V I GA+ M++HGL SSALF Y+R H+R + Sbjct: 287 IAYSSVSHMGLVAAAILIQTPIAYSGALILMIAHGLTSSALFCLANTNYERTHSRTLLLA 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A ++AN+ LP +GE VI+S+F S +L G +++A Sbjct: 347 RGLQIALPLMAFWWFASSLANLALPPLPNLMGELFVIISLFNWSWWTLILTGAGTLITAA 406 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 YSL+++ G + L RE +++ Sbjct: 407 YSLYMFLTTQRGPLPAH-IMSLDPSHTREHLLIF 439 >gi|120586707|ref|YP_961365.1| NADH dehydrogenase subunit 4 [Oncorhynchus masou ishikawae] gi|110764810|gb|ABG90507.1| NADH dehydrogenase subunit 4 [Oncorhynchus masou ishikawae] gi|110810350|gb|ABG91530.1| NADH dehydrogenase subunit 4 [Oncorhynchus masou ishikawae] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRAYISLLVSLQTFLVLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDSG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L M P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYMQ--PMHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P+I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVVLDPLTKELAYPLIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFSGAIILMVAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFMASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + L+ RE ++ Sbjct: 411 LFLMTQRGPLPSHII-ALEPTHTREHLLI 438 >gi|5565825|gb|AAD45214.1| NADH dehydrogenase subunit 4 [Marmota menzbieri] Length = 408 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/356 (37%), Positives = 200/356 (56%), Gaps = 12/356 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN--FREYM--IAFLVLESMVIGAFLSLDMLL 136 D +S L++LT +L P I++S + + R+ + + + L+S +I F + ++++ Sbjct: 44 TDPLSSPLLILTAWLLPLMIMASQSHLTQEPLIRKKLCILMLISLQSFLIMTFSATELIM 103 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+LIP +II WG +E + A F YT GS+ +L A++ + +K T S Sbjct: 104 FYILFEATLIPTLIIITRWGNQTEWLNAGLYFLFYTLVGSLHLLVALIYI--QKSTGSLN 161 Query: 194 -IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 II Y S P S + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 162 FIISTYQSSVLPMSWTNHILWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 221 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR L PL S P I LSL +I + + QTD+K LIAYSS++HM Sbjct: 222 LKLGGYGMIRISTFLHPLTSNMAYPFIM-LSLWGMIMTGSICLRQTDLKSLIAYSSVSHM 280 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 281 ALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRAMTLARGLQSILPL 340 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A + T+ N+ LP + IGE +IM+ F SN +L ++ +ALYSL++ Sbjct: 341 MATWWTLATLTNLALPPSINLIGELFIIMASFTWSNISIILTGLNMLTTALYSLYM 396 >gi|538455|gb|AAA67382.1| presumptive protein 4 [Sceloporus grammicus] Length = 461 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 199/364 (54%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + L +D IS L+VL+ +L P +L+S ++ R +++ +L++++I F Sbjct: 52 FSTPQLMIDPISAPLLVLSCWLLPLMVLASQNHLKSEPIHRKRMFLMTLSILQTLLILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + + LFYI FEA+L+P +II WG +ER+ A F YT S+ +L AI+ + Sbjct: 112 TATNFTLFYIMFEATLVPTLIIITRWGNQAERLTAGTYFLFYTLASSLPLLIAILYFNTK 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 SSI+ L P W MW A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 THHSSIMLLQLTQ--PQLTNTWSNVFMWTACLLAFMVKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L P+ + + P + L+L I+ S + M QTD+K LIA Sbjct: 230 MVLAAILLKLGGYGIMRVSALLMPMTPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GAM M++HGL SS LF Y+R HTR + G Sbjct: 289 YSSVSHMGLVIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 P + ++ + NM LP + +GE L+I+S+F S+ +L G +++A YS Sbjct: 349 FQIIFPLMSTWWLMANLTNMALPPSINLMGELLIIVSLFNWSSPTILLTGLGTLITAAYS 408 Query: 425 LWLY 428 L ++ Sbjct: 409 LHMF 412 >gi|165932419|ref|YP_001650836.1| NADH dehydrogenase subunit 4 [Hippocampus kuda] gi|154758830|dbj|BAF74973.1| NADH dehydrogenase subunit 4 [Hippocampus kuda] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/360 (36%), Positives = 203/360 (56%), Gaps = 14/360 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L++LT +L P IL+S + R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLILTCWLLPLMILASQNHTTNDPINRQRLYISLLASLQMFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + KT S Sbjct: 117 IMFYVMFEATLIPTLLIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLML--QNKTGS 174 Query: 194 IIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + L P ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSMLTLQFSNPLNLIHLGDKLW-WTGCLLAFLVKMPLYGIHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL+ Q P + L+L II L+ + Q D+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRLMNILEPLSKQLSYPFMI-LALWGIIMTGLICLRQNDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG VT GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVTTGILIQTPWGFTGALVLMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A ++ANM LP +GE ++I S+F S +L G +++A YSL+L+ Sbjct: 353 LPLMATWWFTASLANMALPPLPNLMGELMIISSLFNWSPWTLILTGLGTLITAGYSLYLF 412 >gi|327492845|ref|YP_004347726.1| NADH dehydrogenase subunit 4 [Phoxinus steindachneri] gi|327396751|dbj|BAK14170.1| NADH dehydrogenase subunit 4 [Phoxinus steindachneri] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYIMLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLSAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYAQPLPLHSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILVQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMVLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELVIITTLFNWSPWTIMLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHIMKLPPFHTREHLLM 438 >gi|53686330|ref|YP_097189.1| NADH dehydrogenase subunit 4 [Desmognathus fuscus] gi|51979963|gb|AAU20626.1| NADH dehydrogenase subunit 4 [Desmognathus fuscus] Length = 457 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 140/387 (36%), Positives = 218/387 (56%), Gaps = 18/387 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FREYMIA--FLVLESMVIGAFLSLD 133 ++G+D IS L+ LT +L P IL+S ++ N +R+ M F +L+ +I AF S + Sbjct: 55 YMGLDQISSPLLTLTCWLLPLMILASQNHLKNNPMYRQQMYTSMFTILQLALILAFSSTE 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T+ Sbjct: 115 LILFYISFEATLIPTLIIITRWGNQTERLNAGXYFLFYTLAGSLPLLIALLLL--YNSTN 172 Query: 193 SI-----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+ I+L MS + +W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 SLHMEFLINLPQMSTTTIMNKV-LWLACLTAFMVKMPLYGAHLWLPKAHVEAPVAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L PL + +I L+L I+ L+ M QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGIIRITLMFNPLVELSYPFII--LALWGILMTGLICMRQTDLKSLIAYSS 289 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GA+ M+SHGL+SS+LF Y+R H+R + GL Sbjct: 290 VSHMGLVVAAALIQTPWSFTGAIILMVSHGLISSSLFCLANTNYERTHSRTMLLARGLQM 349 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ + NM LP T GE +++ S+F S ++ G +++A Y+L++ Sbjct: 350 MLPLMATWWLLSNLFNMALPPTPNLWGELMIMTSLFNWSPWTILITGLGTIITAAYTLYM 409 Query: 428 YRKVVFG-VSKCEKVQQLKDLSLRERC 453 + G +SK ++ + RE C Sbjct: 410 FLMTQRGYLSK--HLKYMSPTYTREHC 434 >gi|12583927|gb|AAG59683.1| NADH dehydrogenase subunit 4 [Muntiacus muntjak annamensis] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYWM------------WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYWM W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWMQPLSSSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|310788858|gb|ADP24432.1| NADH dehydrogenase subunit 4 [Sinocyclocheilus xunlensis] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW---MWIA-FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W +W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWGAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVTLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTSWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAAWWFTANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|84579667|dbj|BAE72247.1| NADH dehydrogenase subunit 4 [Oryzias latipes] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/356 (37%), Positives = 204/356 (57%), Gaps = 14/356 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDML 135 D +S L+VLT +L P IL+S + + N + I+ LV L+ ++ AF + +M+ Sbjct: 58 ATDPLSTPLLVLTCWLLPLMILASQNHMAKEPINRQRTYISLLVSLQIFLVLAFGATEMI 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S+ Sbjct: 118 MFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL--QNSTGSL 175 Query: 195 IDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 L P + ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SFLTTQFFPPLQLHTEASKFW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P A +FT+AN+ LP +GE ++I S+F SN +L G +++A YSL Sbjct: 354 PLLATWWFLFTLANLALPPLPNLMGELMIITSLFNWSNWTLLLTGAGTLITASYSL 409 >gi|309399276|gb|ADO78910.1| NADH dehydrogenase subunit 4 [Cervus nippon hortulorum] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|299823658|ref|YP_003734413.1| NADH dehydrogenase subunit 4 [Silurus glanis] gi|298540061|emb|CAZ64798.1| NADH dehydrogenase subunit 4 [Silurus glanis] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VLT++ P IL+S I+ R Y+ L+ +I AF + + Sbjct: 56 YMGTDPLSTPLLVLTSWFLPVMILASQNHIKTEPIPRQRSYITLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T+ Sbjct: 116 IVMFYIMFEATLIPTLIIITRWGNQAERLSAGTYFLFYTLAGSLPLLVALLLL--HQSTN 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLIIQYSHPLILNSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R ++ L PL+ P+I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AILLKLGGYGMMRMMVILDPLSKDLVYPIIA-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R +R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGALVLMIAHGLVSSALFCLANTTYERAPSRTMVLARGLQAI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE L+I ++F S VL G +++A YSL+L+ Sbjct: 353 FPLTATWWFISNLANLALPPLPNLMGELLIITAMFNWSPLTLVLTGAGTLITAAYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRG-PLPQHIINLQPFHTREHLLM 438 >gi|107736037|ref|YP_626403.1| NADH dehydrogenase subunit 4 [Microtus levis] gi|63081261|gb|AAY30380.1| NADH dehydrogenase subunit 4 [Microtus levis] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/399 (34%), Positives = 219/399 (54%), Gaps = 21/399 (5%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDML 135 D +S L+VLTT+L P +L+S I++ N + Y+ + L+ ++I F + +++ Sbjct: 57 SADPLSAPLLVLTTWLLPLMLLASQNHIKKEPEYNKKLYISLLVCLQILLIMTFSANELI 116 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + + Sbjct: 117 MFYILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLVGSIPLLIALIYI---QNLMGT 173 Query: 195 IDLYAMSKF--PFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ M+ + P + Q W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 LNFALMTLYNSPMN-QTWSNNMLWLACIMAFMVKMPLYGVHLWLPKAHVEAPIAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R L P+ ++Y A LSL +I S V + QTD+K LIAYSS+ Sbjct: 233 AILLKLGGYGMMRISTILDPV-TKYMAYPFILLSLWGMIMTSSVCLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVITAIMIQTPWSFMGATTLMVAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMV 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A ++ ++AN+ LP T IGE ++ S+F SN +L +++++LYS+++ Sbjct: 352 FPLMATWWIMASLANLALPPTINLIGELMITTSMFSWSNPSIILLGTNILITSLYSIYMI 411 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 412 VTTQRG-KLTNHMNNLQPTHTRESTLMALHILPLILLTI 449 >gi|12583930|gb|AAG59685.1| NADH dehydrogenase subunit 4 [Muntiacus muntjak annamensis] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYWM------------WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYWM W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWMQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|68989238|ref|YP_254709.1| NADH dehydrogenase subunit 4 [Cervus nippon yakushimae] gi|67625645|dbj|BAD99596.1| NADH dehydrogenase subunit4 [Cervus nippon yakushimae] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|12583936|gb|AAG59689.1| NADH dehydrogenase subunit 4 [Muntiacus muntjak yunnanensis] gi|12583939|gb|AAG59691.1| NADH dehydrogenase subunit 4 [Muntiacus muntjak nigripes] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYWM------------WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYWM W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWMQPLSSSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|326535989|ref|YP_004300429.1| NADH dehydrogenase subunit 4 [Galaxias sp. 'southern'] gi|311788419|gb|ADQ12807.1| NADH dehydrogenase subunit 4 [Galaxias sp. 'southern'] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 204/363 (56%), Gaps = 12/363 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFL 130 + ++ D +S L+VL+ +L P IL+S N + +++ L L+ +I AF Sbjct: 53 ANLYIATDPLSTPLLVLSCWLLPLMILASQNHTSSEPVNRQRTLVSLLTSLQVFLILAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 113 ATEVIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QN 170 Query: 190 KTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 DTGSLSMLTLQYNSPLGLNTWADKLWWAACLVAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R +L L PL + P + L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMLILDPLTKELAYPFVV-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A V +AN+ LP +GE ++I S+F SN L G +++A YSL Sbjct: 350 QMVLPLMATWWFVANLANLALPPLPNLMGELVIITSLFNWSNWTIALTGVGTLITAAYSL 409 Query: 426 WLY 428 +L+ Sbjct: 410 YLF 412 >gi|313768471|ref|YP_004062149.1| NADH dehydrogenase subunit 4 [Cuora amboinensis] gi|225194543|gb|ACN81798.1| NADH dehydrogenase subunit 4 [Cuora amboinensis] Length = 463 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/388 (33%), Positives = 214/388 (55%), Gaps = 12/388 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +LGVD IS ++L+ +LTP I++ ++ R +++ ++L+ +I AF Sbjct: 51 FSNCYLGVDQISAPFLILSCWLTPMMIMAGQSNLTTEPTPRKRTFILITILLQISLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE++L+P VII WGG ER+ A F YT GS+ +L A++ Sbjct: 111 STTELIMFFIAFESTLLPTLVIITRWGGQMERLNAGTYFLFYTLIGSLPLLVALLTTQTY 170 Query: 189 KKTSSIIDLYAMSKFPFSIQYW---MW-IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T SI L +S +P ++ W MW +A F +F IK+P++ H WLP AHV+AP AGS Sbjct: 171 SGTLSICTL-QLSTYPNTMNSWTHTMWCLALFTAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L P + + L+L +I + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGIIRMTMTLTP-PLKMLSYSFMMLALWGVIMTGFICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V + + GA+ M++HGL SS LF Y+R ++R + Sbjct: 289 YSSVSHMGLVIAATLTQTEWACTGAITLMIAHGLTSSMLFCLANTNYERTNSRTLLLARN 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ NM LP T +GE +I+S+F SN +L G +++A Y+ Sbjct: 349 MQLLLPLMGLWWFSASLTNMALPPTINLMGELTIIVSLFNWSNITILLTGLGTLMTAAYT 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++ +G + ++ + RE Sbjct: 409 LYMLTITQWGETP-SHMKTIPPTHTREH 435 >gi|213136189|gb|ACJ43735.1| NADH dehydrogenase subunit 4 [Notophthalmus viridescens] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/394 (34%), Positives = 220/394 (55%), Gaps = 19/394 (4%) Query: 50 FVWSVFDKGRSSFQMIEYYHWIDY------FCSYHLGVDGISILLVVLTTFLTPFCILSS 103 ++W+ F S M+ W++ + ++ +D IS L+VLT +L P L+S Sbjct: 22 WLWTHFMTSSSIIAMLSLT-WLNMPFEFSMMTNTYMTIDPISSPLLVLTCWLLPLMTLAS 80 Query: 104 WKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-S 158 ++ N R Y+I +L++ +I AF S ++++FYI FEA+LIP +II WG + Sbjct: 81 QNHLKTNPLSRQRMYLIMLTLLQASLIIAFSSTELIMFYIAFEATLIPTLIIITRWGNQT 140 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIA 214 ER+ A F YT GS+ +L A++V+ + S+ + M P +Q + +W+A Sbjct: 141 ERLNARTYFLFYTLAGSLPLLVALLVLQTSLGSLSLTLINMME--PMMMQNYTNKILWLA 198 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 +F +K+P++ H WLP AHV+AP AG + LA ++LK+GGYG IR L PL + Sbjct: 199 CLPAFMVKMPLYGVHLWLPKAHVEAPIAGPMILAAVLLKLGGYGIIRITTILTPLTKEMS 258 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P I L+L ++ SL+ M QTD+K LIAYSS++HMG + GA+ M+ Sbjct: 259 YPFII-LALWGVVMTSLICMRQTDLKSLIAYSSVSHMGLAIAATIIQTPWSLTGAIILMI 317 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGL+SSALF + Y+R HTR + G +P A ++ ++NM LP + G Sbjct: 318 SHGLISSALFCLANLNYERTHTRTLLLVRGAQTILPLMATWWLLANLSNMALPPSMNLWG 377 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 E ++++S+F S ++ G +++A Y+L++Y Sbjct: 378 ELMIMVSMFNWSPWTILITGTGTLITASYTLYMY 411 >gi|29570651|ref|NP_818913.1| NADH dehydrogenase subunit 4 [Eigenmannia sp. CBM-ZF-10620] gi|29501132|dbj|BAC67490.1| NADH dehydrogenase subunit 4 [Eigenmannia sp. CBM-ZF-10620] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ +D +S L++LT +L P I++S IQ R Y+ L+ +I AF + Sbjct: 54 NQYMAIDPLSTPLLILTCWLLPLMIIASQNHIQPEPISRQRTYITLLASLQMFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSHPLALLSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R + L PL P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGMMRITVMLDPLTKDLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAAGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE ++I ++F S ++ G +++A YSL+ Sbjct: 351 MIFPLTAAWWFIANLANLALPPLPNLMGELMIISAMFNWSPWTLIMTGAGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L+ RE ++ Sbjct: 411 LFLMSQRGPAPTHII-NLQPFHTREHLLM 438 >gi|300507590|dbj|BAJ11206.1| NADH dehydrogenase subunit-4 [Cobitis striata] gi|300507595|dbj|BAJ11210.1| NADH dehydrogenase subunit-4 [Cobitis striata] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 215/388 (55%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVSLQTFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQHSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L ++ F + +W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLILQYSQPLALFSWGHMFW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF +Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTVYERTHSRTMILARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+L Sbjct: 352 IFPLTAAWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGIGTLITAGYSLYL 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L RE ++ Sbjct: 412 FLMSQRGPTP-PHITGLPPFHTREHLLL 438 >gi|262399603|gb|ACY65566.1| NADH dehydrogenase subunit 4 [Pan troglodytes verus] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/396 (33%), Positives = 219/396 (55%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + T ++ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALI---YTHNTLGSLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + ++ + W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 ILLLTLTTQELSNTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 355 MAFWWLLASLTNLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + +K RE +++ PI +L++ Sbjct: 415 QWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|260766622|gb|ACX50346.1| NADH dehydrogenase subunit 4 [Moxostoma albidum] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQSHIDPEPVSRQRLYISLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P +++ W W + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLESWGHKFWWASCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + G Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGFQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFTANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHITGLPPFHTREHLLM 438 >gi|280978149|ref|YP_003345095.1| NADH dehydrogenase subunit 4 [Nessorhamphus ingolfianus] gi|271280427|dbj|BAI53272.1| NADH dehydrogenase subunit 4 [Nessorhamphus ingolfianus] Length = 460 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/388 (34%), Positives = 213/388 (54%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S + R Y+ ++L+ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLSCWLLPLMILASQNHMILEPINRQRSYITLLVILQILLTMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLQKDLG 173 Query: 191 TSSIIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + P S + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTIQYTKPIPLSSWGDKTW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL + P I L+L II + + QTD+K +IAYSS Sbjct: 233 AAVLLKLGGYGMMRMMTMLNPLTKELMYPFII-LALWGIIMTGSICLRQTDLKSMIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + +AN+ LP +GE ++I S+F S+ +L G +++A YSL++ Sbjct: 352 VLPLMAAWWFIANLANLALPPLPNLMGELMIITSLFNWSHWSILLTGLGTLITAGYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L+ RE ++ Sbjct: 412 FLTTQRGPTP-NHIIGLEPSHTREHLLI 438 >gi|48478001|ref|YP_023707.1| NADH dehydrogenase subunit M [Picrophilus torridus DSM 9790] gi|48430649|gb|AAT43514.1| NADH-quinone oxidoreductase chain M [Picrophilus torridus DSM 9790] Length = 493 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/418 (31%), Positives = 229/418 (54%), Gaps = 21/418 (5%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL 130 + ++ + G+ G + L++++ +T F ++ S + + MI L G F Sbjct: 70 LSFYITLSFGLTGFTDALIIMSMVVTLFALMISDYNNPSFYGLIMITGFGLS----GFFA 125 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMC---- 186 S++ L FY+F+E +IPMF+II +GG+ + + KFF+YT GS+F+L +I + Sbjct: 126 SMNFLFFYVFWEVVIIPMFIIISRYGGNNKRLISLKFFIYTHLGSLFLLLSIFTLSGYYF 185 Query: 187 -----WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + ++++ Y P + Y++ F +F IK+P FP H WLPNAH AP Sbjct: 186 IETNVLTFQIHTLMNPYFQRTIPRAGYYFIIFGFLAAFLIKLPAFPLHEWLPNAHYTAPF 245 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 GS+ L+G +L MGGYG + L P+ L + ++ +I I+Y SL SM QT++K+ Sbjct: 246 PGSIMLSGGLLSMGGYGLLGILYPVSVLFPKILIYILISTGIIGIVYFSLTSMFQTNLKR 305 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSG-------VEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 +IAYSS A M +V + + + S + G M+Q ++H V S F + IY R Sbjct: 306 MIAYSSAAEMSFVLVSFGTSVISSGYPRVLDLSGGMYQTVAHSFVISLAFASLFYIYKRT 365 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T I+ GG+ N+P + M+ +A+ G+P +GFIGEF +I+ + + + ++ Sbjct: 366 GTLQIYGLGGIQRNIPMASSFFMISMLASFGVPALAGFIGEFSIIVGSYYSIGLLTLIIV 425 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 G++++ Y LW ++ ++G+ E + +L DL+ E ++ + ++++FFGIYP P+ Sbjct: 426 AGLMIATGYFLWAAQRSLYGIYN-ENLGKLNDLNGYEFLILLTMLLVSIFFGIYPEPV 482 >gi|310788926|gb|ADP24466.1| NADH dehydrogenase subunit 4 [Crossocheilus reticulatus] Length = 460 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 210/383 (54%), Gaps = 13/383 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQMFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGEIMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 G + + L+ RE Sbjct: 413 LMSQRGPTP-NHITGLQPFHTRE 434 >gi|300470676|dbj|BAJ11159.1| NADH dehydrogenase subunit-4 [Cobitis biwae] Length = 460 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPVNRQRLYITLLVFLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLNAWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTSWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTPTH-ITGLPPFHTREHLLM 438 >gi|240266538|ref|YP_002970884.1| NADH dehydrogenase subunit 4 [Gambelia wislizenii] gi|239735184|dbj|BAH70404.1| NADH dehydrogenase subunit 4 [Gambelia wislizenii] Length = 456 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/359 (37%), Positives = 194/359 (54%), Gaps = 8/359 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV----LESMVIGAF 129 F + L +D IS L+VL+ +L P L+S +Q AFL+ L++ +I F Sbjct: 52 FSNTWLAIDHISAPLLVLSCWLLPLMALASQNHLQPEPTHRKQAFLITLAMLQTFLIITF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + + LFYI FEA+LIP +II WG +ER+ A F YT S+ +L AI+ + Sbjct: 112 SATNFTLFYIMFEATLIPTLIIITRWGNQAERLSAGIYFLFYTLASSLPLLVAILYFNTK 171 Query: 189 KKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 SS + L + +W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NHHSSTLLLQLSQPLLNTSWSNTMLWTACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG IR L L PL + + P + LSL II S + M QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGIIRISLFLSPLTQKLYFPFMI-LSLWGIIMTSSICMRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V + GAM M++HGL SS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVIAACMIQTPWSISGAMILMIAHGLTSSMLFCLANTNYERTHSRTLVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P ++ + NM LP T +GE L+I S+F S +L G +++A+YSL Sbjct: 351 MILPLMTTWWLLANLTNMALPPTINLMGELLIITSLFNWSYLTILLTGTGTLITAIYSL 409 >gi|226463877|ref|YP_002791129.1| NADH dehydrogenase subunit 4 [Anguis fragilis] gi|167030969|gb|ABZ05729.1| NADH dehydrogenase subunit 4 [Anguis fragilis] Length = 460 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 206/375 (54%), Gaps = 19/375 (5%) Query: 70 WIDYFCSYHLG-------VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAF 118 W+ Y S L +D +S L+VL+ +L P ++S +++ R Y++ Sbjct: 41 WLKYPMSLELSFSNKLMTIDPLSAPLLVLSCWLLPLMSMASQNHLRQEPLPRKRMYLLTL 100 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIF 177 L+ +I F + D+ +FY+ FEA+LIP V+I WG +ER+ A F YT S+ Sbjct: 101 TTLQVFLIMTFSASDLTMFYVMFEATLIPTLVVITRWGHQAERLSAGTYFLFYTLASSLP 160 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLP 233 +L AI+ + + + L+ + P W +W +F +K+PM+ H WLP Sbjct: 161 LLIAILHLNKSLLLTYMPLLHTLQ--PELQNSWSNTALWYGCLLAFMVKMPMYGLHLWLP 218 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 AHV+AP AGS+ LA ++LK+GGYG IR L PL + P++ L+L I+ AS + Sbjct: 219 KAHVEAPIAGSMVLAAVLLKLGGYGIIRISTTLSPLTNTLTYPLLI-LALWGILMASSIC 277 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTD+K +IAYSSI+HMG V + + GA+F M++HGL SS LF Y+R Sbjct: 278 LRQTDLKSMIAYSSISHMGLVICATLIQTQWSLNGAIFLMIAHGLTSSLLFCLANTNYER 337 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 H+R + GL +P ++ ++AN+ LP + +GE L+I S+F +NT +L Sbjct: 338 THSRTLLLTRGLHIILPLMTFWWLIASLANLALPPSINLMGELLIISSLFNWANTTIILT 397 Query: 414 SFGVVLSALYSLWLY 428 G +L+A YSL+++ Sbjct: 398 GLGTLLAASYSLYMF 412 >gi|326329622|ref|ZP_08195944.1| NADH-quinone oxidoreductase, M subunit [Nocardioidaceae bacterium Broad-1] gi|325952618|gb|EGD44636.1| NADH-quinone oxidoreductase, M subunit [Nocardioidaceae bacterium Broad-1] Length = 474 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 220/387 (56%), Gaps = 8/387 (2%) Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAY 165 +++++ + + L LE+ + FL+ D+ +FYI FEA+LIP + +IG GG R AA Sbjct: 86 AVKDHDKRWYAWALALEAFALLTFLAADLFVFYIAFEATLIPAYFMIGQHGGPHRAKAAL 145 Query: 166 KFFLYTFFGSIFMLFAI----VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAI 221 KF ++ G + +L A+ VV S +I A + + W+++A F +FA+ Sbjct: 146 KFLMFQLGGGLVLLGALIGFFVVSSEAGAPSYLISDLAQLDIGTTAERWIFVAMFIAFAV 205 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K P+FP HTWL + QA T SV L ++ K+G +G IR L L P AS + PV+ L Sbjct: 206 KAPLFPVHTWLADTTEQATTPTSVLLVCVLDKIGTFGMIRLCLGLVPEASAWATPVVVVL 265 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 +LI+I+Y +++++ Q D+ +LI +S++H G +T+GIF+ + G+ GA+ M++HG+ ++ Sbjct: 266 ALISIVYGAVLAIGQDDLLRLIGLTSLSHFGLITLGIFAATREGLVGAILYMVNHGVATA 325 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 A+F G + R T I + GL P A +V +A GLPG S F+ E +V++S Sbjct: 326 AMFLIAGFLIARKGTASISSMRGLEKATPVLAGTFLVAGLATAGLPGLSQFVSEIMVLIS 385 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 F V V+A +VL+A+Y LW Y+++ G ++ + ++DL RE ++ P+ V Sbjct: 386 AFDYHWLVGVIAVTAIVLAAIYVLWAYQRIFTGPAQLSR-GPVRDLDRREVGVLVPLLVA 444 Query: 462 TVFFGIYPVPI---RDTFSVPLSSIIE 485 +FFG P P+ PL +I+ Sbjct: 445 LLFFGFVPGPLISAAQPVVAPLVDVIQ 471 >gi|260766571|gb|ACX50312.1| NADH dehydrogenase subunit 4 [Catostomus clarkii] Length = 460 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + +L D +SI L+VLT +L P IL+S I N + I+ L L++ +I AF + Sbjct: 54 NMYLATDPLSIPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMMILQYSQPLILESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFAANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGAGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + V L RE ++ Sbjct: 411 LFLMSQRGPTPTHIV-GLPPFHTREHLLM 438 >gi|327492943|ref|YP_004347897.1| NADH dehydrogenase subunit 4 [Tetraodon cutcutia] gi|327392444|dbj|BAK09882.1| NADH dehydrogenase subunit 4 [Tetraodon cutcutia] Length = 460 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 207/363 (57%), Gaps = 16/363 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI--QENFREYM-IAFLV-LESMVIGAF 129 F + +L D +S ++L+ +L P IL+S + + N R+ M I+ L L+ +I AF Sbjct: 52 FLTPYLATDSLSTPFLILSCWLLPLMILASQNHMTHEPNNRQRMYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +ML+FY+ FEA+LIP V+I WG +ER+ A F YT GS+ +L A++ + Sbjct: 112 AATEMLMFYVMFEATLIPTLVLITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLSL--- 168 Query: 189 KKTSSIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + + + L + P ++ ++W W+ +F IK+P++ H WLP AHV+AP A Sbjct: 169 QNFNGSLSLLTLPYLPPNLLSSYTHKFW-WMGCMAAFLIKMPLYGVHLWLPKAHVEAPIA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R ++ L PL + P I L+L I+ L+ + QTD+K L Sbjct: 228 GSMILAAVLLKLGGYGMMRIMVVLEPLTKELSYPFII-LALWGIVMTGLICLRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 287 IAYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLA 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P + ++AN+ LP +GE ++I S+F S VL G +++A Sbjct: 347 RGLQMALPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSAWTIVLTGLGTLITAS 406 Query: 423 YSL 425 YSL Sbjct: 407 YSL 409 >gi|117650156|gb|ABK54084.1| NADH dehydrogenase subunit 4 [Rusa unicolor swinhoei] Length = 459 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMVAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|53686526|ref|YP_097202.1| NADH dehydrogenase subunit 4 [Batrachoseps attenuatus] gi|51979977|gb|AAU20639.1| NADH dehydrogenase subunit 4 [Batrachoseps attenuatus] Length = 458 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 139/394 (35%), Positives = 224/394 (56%), Gaps = 24/394 (6%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFL-VLESMVIGAFLS 131 + ++G+D IS L+ LT +L P IL+S +++ N+++ I+ L VL+ M+I AF S Sbjct: 53 NKYMGLDYISSPLLTLTCWLLPLMILASQNHLKKSPINWQQMYISMLSVLQIMLIMAFSS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L +++++ + Sbjct: 113 TELIMFYITFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLISLLLLSFNIG 172 Query: 191 TSSI------IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + SI +LY M+ S+ +MW +F +K+P++ H WLP AHV+AP AGS Sbjct: 173 SLSINLITTTPELYLMT----SMNKFMWFGCLTAFMVKMPLYGTHLWLPKAHVEAPVAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + PL + +I L+L ++ L+ M QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGIIRVTMLFTPLVELSYPFII--LALWGVLMTGLICMRQTDLKSLIA 286 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSSI+HMG V GA+ M+SHGL+SSALF Y+R H+R + G Sbjct: 287 YSSISHMGLVVAAALIQTPWSFTGAILLMISHGLISSALFCLANTNYERTHSRTMILARG 346 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L MP A ++ ++N+ LP T+ GE ++++S+F S ++ G +++A Y+ Sbjct: 347 LQTVMPLMATWWLISNLSNLALPPTTNLWGELMIMISLFNWSPWTIMMTGLGTLVTAAYT 406 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLS---LRERCMV 455 L ++ + + LK S RE C++ Sbjct: 407 LHMF----LMTQRGQLQSHLKIFSPTLTREHCLM 436 >gi|209662423|ref|YP_002286810.1| NADH dehydrogenase subunit 4 [Xenotoca eiseni] gi|209446955|dbj|BAG74821.1| NADH dehydrogenase subunit 4 [Xenotoca eiseni] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 200/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + D +S L+VLT +L P I++S + R Y+ + L+ +I AF Sbjct: 52 FLGTYTATDPLSTPLLVLTCWLLPLMIIASQNHLMMEPMNRQRLYISLLISLQMFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A++V Sbjct: 112 SATEVIMFYVMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVALLVFQSS 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S + + P + W W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSFLTTSFLPSTPLDTWASKTW-WVACLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L ++ + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILIILDPLTKELSYPFII-LALWGVLMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALVLMIAHGLTSSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G++++A YSL Sbjct: 350 QMALPLMTAWWFIASLANLALPPLPNLMGELMIISSLFNWSMWTLALTGLGMLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|118722298|ref|YP_908773.1| NADH dehydrogenase subunit 4 [Oncorhynchus nerka] gi|117650169|gb|ABK54070.1| NADH dehydrogenase subunit 4 [Oncorhynchus nerka] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 204/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRTYISLLVSLQTFLVLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDNG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYTQ--PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P V ++AN+ LP +GE ++I S+F S+ +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSHWTLILTGLGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|39981077|gb|AAR33070.1| NADH dehydrogenase subunit 4 [Balaenoptera edeni] Length = 459 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 206/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKS-IQE---NFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S I+E + Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLIKEPPVRKKLYITMLITLQTLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+V + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALVYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP A S+ LA ++ Sbjct: 176 FLLLQHWAEPLSTSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIARSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MSVF SN +L +V++ALY+L++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSVFSWSNPTILLMGANIVITALYTLYM 410 >gi|215399177|ref|YP_002332305.1| NADH dehydrogenase subunit 4 [Podarcis siculus] gi|62900877|gb|AAY18765.1| NADH dehydrogenase subunit 4 [Podarcis siculus] gi|213983312|gb|ACJ54994.1| NADH dehydrogenase subunit 4 [Podarcis siculus] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 131/381 (34%), Positives = 204/381 (53%), Gaps = 11/381 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDML 135 +D S L++L+ +L P IL+S ++ R +++ L++ +I F + + + Sbjct: 58 NIDMTSAPLIILSCWLLPLMILASQNHLKTEPLNRKRTFLMILTTLQTTLIMTFAASEFI 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 LFYI FE +LIP +II WG +ER+ A F YT S+ +L ++ K + Sbjct: 118 LFYILFETTLIPTLIIITRWGNQAERLNAGLYFLFYTLASSLPLLITLLYFN-NKFLHTS 176 Query: 195 IDLYAMSK---FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++L M++ P +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 177 MELLFMTQPELLPTDSSPLLWLACLLAFLVKLPLYGLHLWLPKAHVEAPIAGSMVLAAIL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR L P P I L+L I+ S + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGLIRISPMLNPHPPNLMFP-IMVLALWGILMTSSICLRQTDLKALIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G VT I + G+ GAM M++HGL SSALF Y+R HTR + GL P Sbjct: 296 GLVTAAIIAQTPWGLTGAMTLMIAHGLTSSALFALANTNYERTHTRTLLLVRGLQLIFPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ + NM +P T +GE +I ++F S+ V+ G +++A YSL+++ Sbjct: 356 MSTWWLLTNLTNMAMPPTINLLGELFIISTLFNWSSPTIVITGIGTLITATYSLYMFLMT 415 Query: 432 VFGVSKCEKVQQLKDLSLRER 452 G S + + L RE Sbjct: 416 QRG-SISTQFRLLPPTHTREH 435 >gi|53686540|ref|YP_097150.1| NADH dehydrogenase subunit 4 [Thorius n. sp. RLM-2004] gi|51979921|gb|AAU20587.1| NADH dehydrogenase subunit 4 [Thorius n. sp. RLM-2004] Length = 457 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 138/391 (35%), Positives = 215/391 (54%), Gaps = 23/391 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S +LG+D +S L+VLT + P IL+S ++ N FR+ Y++ ++L+ ++ AF S Sbjct: 53 SKYLGLDCLSSPLLVLTCWXLPLMILASQGHLKNNPNFRQRVYIMMLVILQMTLVLAFSS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 113 TELILFYVTFEATLIPTLIIITRWGNQTERLGAGTYFLFYTLAGSLPLLVALLFL----- 167 Query: 191 TSSIIDLYAMSKFPFSIQYWM--------WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 S + +M+ P S + +M W +F +K+P++ H WLP AHV+AP A Sbjct: 168 --SNMGTLSMNLLPLSPEMFMMSTTNKFLWFGCLTAFMVKMPLYGAHLWLPKAHVEAPVA 225 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG IR + PL + +I L+L ++ L+ QTD+K L Sbjct: 226 GSMILAAVLLKLGGYGIIRITMMFTPLTELSYPFII--LALWGVLMTGLICTRQTDLKSL 283 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V GA+ M+SHGL+SSALF Y+R H+R + Sbjct: 284 IAYSSVSHMGLVVAAALIQTPWSFTGAIILMVSHGLISSALFCLANTSYERTHSRTMLLA 343 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A ++ +ANM LP T+ GE +VI+S+F S+ +L G +++A Sbjct: 344 RGLQLVLPLMAAWWLLSNLANMALPPTTNLWGELMVIVSLFNWSSWTILLTGLGTLITAA 403 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 Y+L ++ G+ S RE C Sbjct: 404 YTLHMFLSSQRGLLPNHLKSTPPTFS-REHC 433 >gi|9653269|ref|NP_062476.1| NADH dehydrogenase subunit 4 [Physeter catodon] gi|9368972|emb|CAB98279.1| NADH dehydrogenase subunit 4 [Physeter catodon] Length = 459 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 133/384 (34%), Positives = 208/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSTPLLILTMWLLPLMLMASQSHLLKEPLARKKLYITMLITLQVFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+ + + T+ ++ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLLGSLPLLVALTYL---QNTTGTLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 M + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLMQYWTQPLSTSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSSI+HM Sbjct: 236 LKLGGYGMLRITPMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSISHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVITAILIQTPWSYMGATTLMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T IGE V+MS+F SN +L +V++ LYSL++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELFVMMSMFSWSNLTIILMGTNIVITTLYSLYMLITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 +G V L RE ++ Sbjct: 415 QYG-KHTYHVNNLTPSFTREHTLM 437 >gi|299829126|ref|YP_003735139.1| NADH dehydrogenase subunit 4 [Harriotta raleighana] gi|298110925|gb|ADI57875.1| NADH dehydrogenase subunit 4 [Harriotta raleighana] Length = 458 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/388 (35%), Positives = 208/388 (53%), Gaps = 8/388 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + GVD +S L+VLT +L P +++S ++ R Y+ + L+ + AF Sbjct: 52 FTNNFAGVDPLSAPLMVLTCWLLPLMMMASQNHLKTEPINRQRVYITLLITLQLSLTMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVV-MCW 187 SL+M+ FYI FE +LIP ++I WG ER+ A F YT GS+ +L A++ W Sbjct: 112 SSLEMVSFYIMFETTLIPTLILITRWGNQKERLNAGVYFLFYTLAGSLPLLVALLTLQNW 171 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S I + ++ W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 THSLSLFIPPFTQAQTNDWANILWWAACLTAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R ++ L PL Y P I LS+ I+ A + + QTD+K LIAYSS Sbjct: 232 AAILLKLGGYGLMRIIVVLNPLTKDYAYPFII-LSVWGIVMAGSICLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG VT I GA+ M+SHGL+SSALF Y+R+H+R + G Sbjct: 291 VSHMGLVTAAILIQTPWSFMGAVLLMISHGLISSALFCLANTNYERIHSRTLLLARGTQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + +AN+ LP ++ +GE L++ S+F S +L G +++ YSL++ Sbjct: 351 ILPLMASWWFLTNLANLALPPSTNLMGELLIMTSLFSWSVWTLILTGLGTLVTVCYSLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L RE M+ Sbjct: 411 FLMTQRGPTPSHLI-TLYPSHTREHLMI 437 >gi|288908745|dbj|BAI77003.1| NADH dehydrogenase subunit 4 [Histrio histrio] Length = 457 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 137/383 (35%), Positives = 214/383 (55%), Gaps = 11/383 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D IS L+VLT +L P +L+S + E R +++ L++++I AF + + Sbjct: 56 YMAADYISSPLLVLTCWLLPLMVLASQAHMAAEPAERQRTFLMLMTFLQALLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ML+FY+ FEA+LIP V+I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 MLMFYVMFEATLIPTLVLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGSL 175 Query: 193 SIIDLYAMSKFPFSIQYW---MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + + Y +W+ + +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTL-SFDHLDLNDTYANKVLWVGCLVALLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAYSS+A Sbjct: 235 VLLKLGGYGMMRILTILTPLTKELSYPFII-LALWGLIMTGSICLRQTDLKSLIAYSSVA 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI + G GA+ M++HGL SSALF Y+R H+R I G + Sbjct: 294 HMGLVVAGILTQTMWGYLGALTLMIAHGLTSSALFCLANTNYERTHSRTIMLIRGAQFIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + ++ T+AN+ LP +GE LVI+++F S L G V++A YSL+++ Sbjct: 354 PLMGMWWLIATLANLALPPLPNLVGELLVIVTLFNWSPWSIFLTGAGTVITAAYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRER 452 G + + V L+ RE Sbjct: 414 LTQRGPTP-QHVLALEPTYTREH 435 >gi|332886968|dbj|BAK23078.1| NADH dehydrogenase subunit 4 [Microdevario nana] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/386 (35%), Positives = 209/386 (54%), Gaps = 13/386 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 L D +S L++LT +L P IL+S I R Y+ L++ +I AF + ++ Sbjct: 57 LATDLLSTPLLILTCWLLPLMILASQNHISPEPINRQRIYITLLTSLQTFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + + + Sbjct: 117 IMFYIMFEATLIPTLMIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLL--QHSSGT 174 Query: 194 IIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSMLIIQHTEPMLLTTWAHKAWWAGCLVAFLVKMPLYGMHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ Q P I L+L II LV + QTD+K LIAYSS+ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLSKQLAYPFIV-LALWGIIMTGLVCLRQTDLKSLIAYSSVG 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ + Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTSYERTHSRTMILARGMQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + +AN+ LP +GE ++I ++F S VL G +++A YSL+++ Sbjct: 354 PLATAWWFIANLANLALPPLPNLMGELMIITAMFNWSPWTIVLTGAGTLITANYSLYMFI 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + E + L RE ++ Sbjct: 414 TSQRGATP-EHIMNLSPSHTREHLLL 438 >gi|300470671|dbj|BAJ11155.1| NADH dehydrogenase subunit-4 [Cobitis biwae] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ ++L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVLLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLHSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTATWWFIANLANLALPPLPNLMGELAIISTLFNWSPWTILLTGVGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTP-PHITGLPPFHTREHLLL 438 >gi|280978443|ref|YP_003345368.1| NADH dehydrogenase subunit 4 [Heteroconger hassi] gi|271280592|dbj|BAI53389.1| NADH dehydrogenase subunit 4 [Heteroconger hassi] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S + R Y+ + L+ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLSCWLLPLMILASQNHVVTEPINRQRSYITLLISLQILLTLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 114 TEVIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIL--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P S+ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLTIQYTTPLSLISWGDKVWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIVLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S+ +L G +++A YSL+ Sbjct: 351 MILPLMAAWWFISNLANLALPPLPNLMGELMIITSMFNWSHWSIILTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L RE ++ Sbjct: 411 MFLMTQRGPTP-NHIMNLDPSHTREHLLI 438 >gi|63081789|gb|AAY30654.1| NADH dehydrogenase subunit 4 [Gyrinocheilus aymonieri] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILPYSQPLTLISWGHKIWWAGCVIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFVANLANLALPPLPNLMGEIMIITTLFNWSPWTIALTGTGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMTQRGPTP-NHILGLPPFHTREHLLM 438 >gi|332886856|dbj|BAK22974.1| NADH dehydrogenase subunit 4 [Psilorhynchus sucatio] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 139/369 (37%), Positives = 210/369 (56%), Gaps = 8/369 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + +LG D +S L+VLT +L P IL+S I N + I+ L L++ +I AF S Sbjct: 54 NQYLGTDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQAFLIMAFSS 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQQTTG 173 Query: 191 TSSIIDL-YAMSKFPFSIQYWMWIA-FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 T S++ L Y+ S + +W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILPYSQPTLSHSWGHTIWWAGCLIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRMMVMLDPLSKELAYPFII-LALWGIIMTGTICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGLSGAIILMIAHGLVSSALFCLANTAYERTHSRTMMLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLMTSWWFLANLANLALPPLPNLMGELMIISTLFNWSPWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSK 437 G S Sbjct: 413 LMTQRGPSP 421 >gi|21908055|ref|NP_663801.1|ND4_16534 NADH dehydrogenase subunit 4 [Muntiacus reevesi] gi|21842399|gb|AAM77763.1|AF527537_10 NADH dehydrogenase subunit 4 [Muntiacus reevesi] Length = 459 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 134/394 (34%), Positives = 212/394 (53%), Gaps = 35/394 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P + +S + + + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLTASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAAELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLS---LRERCMV 455 L++ + + + + ++S RE ++ Sbjct: 408 LYM----LIMTQRGKHTHHINNISPSFTRENALM 437 >gi|29570721|ref|NP_818835.1| NADH dehydrogenase subunit 4 [Cobitis striata] gi|29501048|dbj|BAC67412.1| NADH dehydrogenase subunit 4 [Cobitis striata] gi|300471686|dbj|BAJ11167.1| NADH dehydrogenase subunit-4 [Cobitis striata] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPVNRQRLYITLLVFLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLNAWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTPTH-ITGLPPFHTREHLLM 438 >gi|317097306|ref|YP_004123514.1| NADH dehydrogenase subunit 4 [Gobiobotia brevibarba] gi|223951280|gb|ACN29573.1| NADH dehydrogenase subunit 4 [Gobiobotia brevibarba] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLML--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLLIQYSQPLLLGSWGHKIWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGEIMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-IMKLPPFHTREHLLM 438 >gi|84579597|dbj|BAE72182.1| NADH dehydrogenase subunit 4 [Oryzias latipes] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/388 (34%), Positives = 213/388 (54%), Gaps = 17/388 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + + R Y+ + L+ +I AF + +M Sbjct: 57 IATDPLSTPLLVLTCWLLPLMILASQNHMAKEPINRQRAYISLLISLQIFLILAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + ++ Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL---QNSTG 173 Query: 194 IIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + FP + ++W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSFLTTPFFPPLLLHTEASKFW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A +FT+AN+ LP +GE ++I S+F SN +L G +++A YSL + Sbjct: 352 VLPLLATWWFLFTLANLALPPLPNLMGELMIITSLFNWSNWTLLLTGAGTLITASYSLHM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G V ++ RE ++ Sbjct: 412 FLTTQRG-PITNPVLAIEPTHTREHLLM 438 >gi|45387997|ref|NP_991076.1| NADH dehydrogenase subunit 4 [Megalops atlanticus] gi|45259642|dbj|BAD12386.1| NADH dehydrogenase subunit 4 [Megalops atlanticus] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 212/387 (54%), Gaps = 9/387 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L++++I AF + Sbjct: 54 NTYMATDPLSTPLLVLTCWLLPLMILASQNHTSPEPVNRQRTYLTLLASLQTLLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLTVQKDIG 173 Query: 191 T-SSIIDLYAMSKFPFSIQYWMW-IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 T S ++ + + P S MW + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLLTQHMNTTHPNSWGSTMWWVGCLMAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L P+ + P I L++ II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLSPMTKELAYPFIA-LAMWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERTHSRTLLLARGLQTV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+ S +L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIMNLANLALPPLPNLMGELMIIASMMNWSLWTILLTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTP-NHILILEPSHTREHLLM 438 >gi|280978485|ref|YP_003345407.1| NADH dehydrogenase subunit 4 [Ariosoma shiroanago] gi|271280630|dbj|BAI53415.1| NADH dehydrogenase subunit 4 [Ariosoma shiroanago] Length = 459 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 218/389 (56%), Gaps = 15/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D IS L+VLTT+L P IL+S + R Y+ + L+ ++ AF + Sbjct: 54 NLYLATDPISTPLMVLTTWLLPLMILASQNHMATQPINRQRLYITLLVSLQILLNMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVILFYVMFEATLIPTLIIITRWGNQTERLDAGTYFLFYTLVGSLPLLLALLLLQKDLG 173 Query: 191 TSSIIDLYAMSKFPFSIQ-----YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L + P S+Q W W+A +F +KIP++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMLTLQFTN--PISLQCTGDKIW-WVACLMAFLVKIPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG IR + L PL + P I L+L +I S M QTD+K +IAY Sbjct: 231 VLAAVLLKLGGYGIIRVISILSPLTKEMAYPFIV-LALWGMIMTSSTCMRQTDLKAIIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G+ GAM M++HGLVSS+LF Y+R +R + GL Sbjct: 290 SSVSHMGIVVAGIMIQTSWGLTGAMILMIAHGLVSSSLFCLANFNYERTQSRTLLLVRGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 MP A + ++ANM P + E +I ++ + S +L G +++A+YSL Sbjct: 350 QAIMPLMASWWFIASLANMAFPPLPTLMAEITLISTLLEWSFWSIILTGLGTLITAMYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 +++ V G++ + + + RE + Sbjct: 410 YMFLVVKRGITP-KHMNTMDPPQTRENLL 437 >gi|300470666|dbj|BAJ11151.1| NADH dehydrogenase subunit-4 [Cobitis biwae] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ ++L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVLLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLHSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAAWWFIANLANLALPPLPNLMGELAIISTLFNWSPWTILLTGVGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTP-PHITGLPPFHTREHLLL 438 >gi|197311181|ref|YP_002154461.1| NADH dehydrogenase subunit 4 [Ptychochromoides katria] gi|197304607|dbj|BAG69533.1| NADH dehydrogenase subunit 4 [Ptychochromoides katria] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + ++ D +S L+ LT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLALTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATELILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNN 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L +M F+ + W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYAPSMQLSSFADKLW-WMGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R + L PL + P I F +L II + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRMMTMLEPLTKELSYPFIIF-ALWGIIMTGTICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R HTR + GL Sbjct: 290 SSVSHMGLVAAGILIQTSWGFTGALILMIAHGLTSSALFCLANTNYERTHTRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+ S L G +++A YSL Sbjct: 350 QMVLPLMATWWFIASLANLALPPIPNLMGELMIITSLLNWSWWTITLTGIGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|12583933|gb|AAG59687.1| NADH dehydrogenase subunit 4 [Muntiacus muntjak menglasis] Length = 459 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPVMLMASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYWM------------WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYWM W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LM--------LQYWMQPLSSSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|299828946|ref|YP_003734776.1| NADH dehydrogenase subunit 4 [Lycothrissa crocodilus] gi|299758199|dbj|BAJ09992.1| NADH dehydrogenase subunit 4 [Lycothrissa crocodilus] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 140/400 (35%), Positives = 216/400 (54%), Gaps = 19/400 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L +D +S L+VLT +L P IL+S Q R Y+ L++ +I AF + + Sbjct: 56 YLAIDPLSSPLLVLTCWLLPLMILASQNHTQTEPTSRQRMYISLLASLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T+ Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLAL---QTTT 172 Query: 193 SIIDLYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + + +S P ++ W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 GSLSMITLSFNQPLNLLSWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L PL P I L+L I+ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRITPILDPLTKDMAYPFII-LALWGIVMTGAICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI + G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVAGGILTQTPWGTTGAIILMIAHGLTSSALFCLANTSYERTHSRTMALARGMQT 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A + +AN+ LP +GE ++I ++F S VL G +++A YSL++ Sbjct: 352 LFPLTATWWFIANLANLALPPLPNLMGEMMIITTMFNWSPWSMVLTGSGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + V L RE ++ PI +LT+ Sbjct: 412 FLMTQRGQTPAH-VTALPPYHTREHLLITLHLIPIILLTI 450 >gi|108767334|ref|YP_636053.1| NADH dehydrogenase subunit 4 [Gila robusta] gi|105873579|gb|ABF74809.1| NADH dehydrogenase subunit 4 [Gila robusta] Length = 460 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y++ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHVNSEPIGRQRLYIMLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYAQPMLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIVLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G++++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGMLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L RE ++ Sbjct: 411 MFLMSQRGPAPSH-IMKLPPFHTREHLLM 438 >gi|107991125|ref|YP_626617.1| NADH dehydrogenase subunit 4 [Salamandrella keyserlingii] gi|51891122|gb|AAU12945.1| NADH dehydrogenase subunit 4 [Salamandrella keyserlingii] gi|84371585|gb|ABC56030.1| NADH dehydrogenase subunit 4 [Salamandrella keyserlingii] Length = 459 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 212/363 (58%), Gaps = 14/363 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + HLG+D IS L++LT +L P IL+S ++ N R Y+ + L++ +I AF + Sbjct: 53 NKHLGLDPISSPLLILTCWLLPMMILASQNHLKNNPESRQRMYISMMITLQASLILAFAA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 113 TELIMFYIAFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLIL--QNS 170 Query: 191 TSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S+ L+ P +S + W W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 SGSLSLLWFELANPIQFMLYSDKIW-WMACLLAFMVKMPLYGMHLWLPKAHVEAPIAGSM 229 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R + L PL+ + P I L+L +I ++ QTD+K LIAY Sbjct: 230 ILAAVLLKLGGYGILRISILLTPLSKEMSYPFII-LALWGVIMTGMICTRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 289 SSVSHMGLVVAATLIQTPWSLTGAIILMISHGLISSALFCLANMNYERTHSRTLLLMRGA 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ ++NM LP + GE +++S+F SN ++ G +++A ++L Sbjct: 349 QTMLPLMATWWLLANLSNMALPPSLNLWGELTIMVSLFNWSNWTILITGVGTLITASHTL 408 Query: 426 WLY 428 +++ Sbjct: 409 YMF 411 >gi|300471681|dbj|BAJ11163.1| NADH dehydrogenase subunit-4 [Cobitis biwae] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPVSRQRLYITLLVFLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLNAWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTPTH-ITGLPPFHTREHLLM 438 >gi|119360172|ref|YP_913324.1| NADH dehydrogenase subunit 4 [Catostomus commersonii] gi|119225005|dbj|BAF41385.1| NADH dehydrogenase subunit-4 [Catostomus commersonii] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 206/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLASLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMMILQYSQPLVLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV +AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFAANLANLALPPLPNLMGELMIITSLFSWSPWTIALTGMGTLITAGYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|280978247|ref|YP_003345186.1| NADH dehydrogenase subunit 4 [Leptocephalus sp. 'type II larva' (Smith, 1989)] gi|271280719|dbj|BAI53505.1| NADH dehydrogenase subunit 4 [Leptocephalus sp. 'type II larva' (Smith, 1989)] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/389 (33%), Positives = 211/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VL+ +L P IL+S + R Y+ + L+ ++ AF + Sbjct: 54 NLYMATDPLSAPLLVLSCWLLPLMILASQNHMTLEPISRQRSYITLLITLQMLLTLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLTL--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLIMQHTKPLALASWGDKMWWTGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II L+ + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLTPLTKELAYPFIV-LALWGIIMTGLICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVGHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 MILPLMAAWWFTANLANLALPPLPNLMGEIMIITAMFNWSYWSIILTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTP-NHIMALEPSHTREHLLI 438 >gi|310788920|gb|ADP24463.1| NADH dehydrogenase subunit 4 [Neolissochilus stracheyi] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTATWWFLANLANLALPPLPNLMGELMIITTLFSWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L+ RE ++ Sbjct: 413 LMSQRG-QVPSHITGLQPFHTREHLLM 438 >gi|242624434|ref|YP_003002348.1| NADH dehydrogenase subunit 4 [Gillichthys seta] gi|207081479|gb|ACI23027.1| NADH dehydrogenase subunit 4 [Gillichthys seta] Length = 462 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 133/358 (37%), Positives = 206/358 (57%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWK--SIQENFREYMIAFLV--LESMVIGAFLSLDM 134 L +D +S L+VLT +L P +L+S S++ R+ M L+ L+ +I AF + ++ Sbjct: 57 LALDPLSTPLLVLTCWLLPLMVLASQNHLSLEPTNRQRMYVTLLTSLQIFLIMAFSATEV 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 LLFY+ FEA+LIP ++I WG E R+ A F YT GS+ +L A++++ + S Sbjct: 117 LLFYVMFEATLIPTLILITRWGNQEARLNAGTYFLFYTLAGSLPLLVALLILQNTTGSLS 176 Query: 194 IIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L FP + + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLPYADTFPLVSIADKLW-WAGCLLAFLVKMPLYGMHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LIAYSS+ H Sbjct: 236 LLKLGGYGMMRMMIMLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKALIAYSSVGH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R HTR + G+ +P Sbjct: 295 MGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHTRTMLLARGMQMLLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE ++I S+F S T +L G +++A YSL+++ Sbjct: 355 LMASWWFIASLANLALPPLPNLMGELMIISSLFNWSWTTILLTGAGTLITAAYSLYMF 412 >gi|62184462|ref|YP_220611.1| NADH dehydrogenase subunit 4 [Salanx ariakensis] gi|58430883|dbj|BAD89224.1| NADH dehydrogenase subunit 4 [Salanx ariakensis] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 203/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S I R Y+ L+ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLSCWLLPLMILASQNHISPEPINRQRTYIALLASLQMFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ E Sbjct: 114 TEIIMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNETG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+I L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSLITL--QYSQPLHLSTWGDKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R +L L PL+ + P I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMLMLDPLSQELAYPFIV-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTAYERTHSRTMLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I ++F S V+ G +++A YSL+ Sbjct: 351 MALPLMATWWFIANLANLALPPLPNLMGELMIITAMFNWSCWTLVITGLGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|25057797|ref|NP_740019.1| NADH dehydrogenase subunit 4 [Dactyloptena tiltoni] gi|25006008|dbj|BAC23627.1| NADH dehydrogenase subunit 4 [Dactyloptena tiltoni] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 137/384 (35%), Positives = 212/384 (55%), Gaps = 9/384 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 LG D +S L++LT +L P +L+S K + + N + I+ L+ L+ +I AF + ++ Sbjct: 57 LGTDPLSTPLLILTCWLLPLMLLASQKHVNDQPINRQRTFISLLISLQIFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFY+ FEA++IP +II WG ER+ A F YT GS+ +L A++V+ + S Sbjct: 117 ILFYVMFEATIIPTLLIITRWGSQKERLNAGTYFLFYTLMGSLPLLVALLVLQNNIGSLS 176 Query: 194 IIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++ + + S W A +F IK+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 177 LLTVQYSPLDASHLSTNKLWWTACLMAFVIKLPLYGLHLWLPKAHVEAPIAGSMILAAVL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGMMRMMVLLDPLSKELSYPFII-LALWGLIMTGCICLRQTDLKSLIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V GI G GAM M++HGL SSALF Y+R H+R + GL +P Sbjct: 296 GLVAGGILIQTPWGFSGAMVLMITHGLTSSALFCLANTNYERTHSRTMVLARGLQMALPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 +V ++AN+ LP + E ++I ++F S V G +++A YSL+L+ Sbjct: 356 MTTWWLVASLANLALPPIPSSMAELMIITALFNWSQWTLVFTGIGTLITAGYSLYLFIMT 415 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G +Q L RE +V Sbjct: 416 QRG-PLPPHIQTLDPSHTREHLLV 438 >gi|109690045|gb|ABG37916.1| NADH dehydrogenase subunit 4 [Oncorhynchus masou masou] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 211/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRAYISLLVSLQTFLVLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDSG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L M P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYMQ--PMHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVVLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFSGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFMASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + K RE ++ Sbjct: 411 LFLMTQRGPLPSHIIAP-KPTHTREHLLI 438 >gi|330371449|gb|AEC12706.1| NADH dehydrogenase subunit 4 [Hypselobarbus lithopidos] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTATWWFLANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L+ RE ++ Sbjct: 413 LMSQRG-QVPNHITGLQPFHTREHLLM 438 >gi|119360563|ref|YP_913467.1| NADH dehydrogenase subunit 4 [Puntius ticto] gi|119225159|dbj|BAF41528.1| NADH dehydrogenase subunit 4 [Puntius ticto] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/359 (37%), Positives = 205/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M FS + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLLIQYSQPMQLTSFSHKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQIIF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 354 PLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 >gi|260766577|gb|ACX50316.1| NADH dehydrogenase subunit 4 [Catostomus macrocheilus] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVNRQRLYISLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FE++LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFESTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ + P +++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMVILQYSQPLALESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I S+F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFAANLANLALPPLPNLMGELMIITSLFSWSPWTIALTGVGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + V L RE ++ Sbjct: 413 LMSQRGPTPSHIV-GLPPFHTREHLLM 438 >gi|32526838|ref|NP_871770.1| NADH dehydrogenase subunit 4 [Urotrichus talpoides] gi|32469189|dbj|BAC78883.1| NADH dehydrogenase subunit 4 [Urotrichus talpoides] Length = 459 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 133/383 (34%), Positives = 210/383 (54%), Gaps = 13/383 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LVVLTT+L P +++S + + Y+ ++L+ +I F S +++LF Sbjct: 59 DPLSTPLVVLTTWLLPLMLMASQFHLSNEHPIRKKTYISMLILLQVFLIMTFTSTELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-I 195 YI FEA+L+P ++I WG +ER+ A F YT GS+ +L A+ + + T S+ I Sbjct: 119 YILFEATLVPTLILITRWGNQTERLNAGMYFLFYTLVGSLPLLVALTYL--QNSTGSLNI 176 Query: 196 DLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + + P ++ MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 TIMQLMANPMPNKWSSSLMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L P + P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRISTILAPHTNTMAYPFMA-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAIMIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP T IGE LV+++ F SN +L +V++ALYSL++ + Sbjct: 356 AAWWLMASLTNLALPPTINLIGELLVMLTTFSWSNITILLMGLNMVITALYSLYMLIQTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMV 455 G + +K RE ++ Sbjct: 416 RG-KHTHHIINIKPSFTREHALM 437 >gi|330371429|gb|AEC12690.1| NADH dehydrogenase subunit 4 [Hypselobarbus kolus] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTATWWFLANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L+ RE ++ Sbjct: 413 LMSQRG-QVPNHITGLQPFHTREHLLM 438 >gi|119360257|ref|YP_913389.1| NADH dehydrogenase subunit 4 [Opsariichthys uncirostris] gi|119225075|dbj|BAF41450.1| NADH dehydrogenase subunit 4 [Opsariichthys uncirostris] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVTRQRLYITLLASLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYSQPLLLDSWGHKIWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELVYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIVLMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFVANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGMGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L RE ++ Sbjct: 411 MFLMSQRGPTPAH-IMKLPPFHTREHLLM 438 >gi|332886898|dbj|BAK23013.1| NADH dehydrogenase subunit 4 [Nicholsicypris normalis] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|219524128|ref|YP_002456278.1| NADH dehydrogenase subunit 4 [Manouria impressa] gi|149193524|gb|ABR21224.1| NADH dehydrogenase subunit 4 [Manouria impressa] Length = 459 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 131/406 (32%), Positives = 217/406 (53%), Gaps = 17/406 (4%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVI 126 + F +++LG+D IS L++L+ +LTP IL+S + R ++ ++L+ +I Sbjct: 48 LTTFSNHYLGMDQISAPLLILSCWLTPLMILASQNHLTTEPTSRKRTFISTIILLQIPLI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AF + ++++F+I FE +LIP +II WG ER+ A F YT GS+ +L A++ M Sbjct: 108 LAFSATELIMFFIAFETTLIPTLMIITRWGNQVERLNAGTYFLFYTLIGSLPLLVALLSM 167 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + T S + P + W W A +F IK+P++ H WLP AHV+AP Sbjct: 168 QAQNGTLSTCTMQL--NQPTMMNSWTHSMWWFALLTAFMIKMPLYGLHLWLPKAHVEAPI 225 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA ++LK+GGYG IR + L PL+ P + ++L ++ S + QTD+K Sbjct: 226 AGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPFMM-MALWGVVMTSSTCLRQTDLKS 284 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG V + + GA M++HGL SS LF Y+R H+R + Sbjct: 285 LIAYSSVSHMGLVIAATLAQTQWSYTGATTLMIAHGLTSSMLFCLANTNYERTHSRTLLL 344 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 + +P + ++ ++ NM LP T +GE +I S+F SN ++ G +++A Sbjct: 345 TRNMQVLLPLMGLWWLLASLTNMALPPTINLMGELTIITSLFNWSNATILMTGLGTLITA 404 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 Y+L++ +G + ++ + RE + V P+ +L V Sbjct: 405 TYTLYMLITTQWGETPLH-MKTIPPTHTREHLLMTLHVMPMTLLMV 449 >gi|296905343|gb|ADH84035.1| NADH dehydrogenase subunit 4 [Cobitis sinensis] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLSCWLLPLMILASQNHINPEPISRQRLYITLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMTQRGPTPAH-ISGLPPFHTREHLLM 438 >gi|2829021|gb|AAD10063.1| NADH ubiquinone oxidoreductase subunit 4 [Xenocypris hupeinensis] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLDSWGHKIWWASCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSPRGPTP-NHITKLPPFHTREHLLM 438 >gi|327492929|ref|YP_004347884.1| NADH dehydrogenase subunit 4 [Phoxinus eos] gi|327396793|dbj|BAK14209.1| NADH dehydrogenase subunit 4 [Phoxinus eos] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+I L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHINSEPISRQRLYIILLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYAQPLLLVSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L RE ++ Sbjct: 411 MFLMSQRGPTPSH-MMKLPPFHTREHLLM 438 >gi|332886926|dbj|BAK23039.1| NADH dehydrogenase subunit 4 [Yaoshanicus arcus] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINSEPISRQRLYIMLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFTANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHIMKLPPFHTREHLLM 438 >gi|330371439|gb|AEC12698.1| NADH dehydrogenase subunit 4 [Barbodes carnaticus] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYISLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 VIFPLTATWWFLANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + L+ RE ++ Sbjct: 411 MFLMSQRG-QVPNHITGLQPFHTREHLLM 438 >gi|167716860|ref|YP_001686733.1| NADH dehydrogenase subunit 4 [Megalobrama amblycephala] gi|292486429|ref|YP_003541067.1| NADH dehydrogenase subunit 4 [diploid Megalobrama amblycephala x Xenocypris davidi] gi|292486443|ref|YP_003541080.1| NADH dehydrogenase subunit 4 [triploid Megalobrama amblycephala x Xenocypris davidi] gi|6648649|gb|AAF21274.1| NADH ubiquinone oxidoreductase subunit 4 [Megalobrama amblycephala] gi|63081803|gb|AAY30667.1| NADH dehydrogenase subunit 4 [Megalobrama amblycephala] gi|166897654|gb|ABZ01953.1| NADH dehydrogenase subunit 4 [Megalobrama amblycephala] gi|291463790|gb|ADE05497.1| NADH dehydrogenase subunit 4 [diploid Megalobrama amblycephala x Xenocypris davidi] gi|291463804|gb|ADE05510.1| NADH dehydrogenase subunit 4 [triploid Megalobrama amblycephala x Xenocypris davidi] Length = 460 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPMLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-ITKLPPFHTREHLLM 438 >gi|107991041|ref|YP_626552.1| NADH dehydrogenase subunit 4 [Batrachuperus londongensis] gi|51891110|gb|AAU12939.1| NADH dehydrogenase subunit 4 [Batrachuperus londongensis] gi|84371515|gb|ABC55965.1| NADH dehydrogenase subunit 4 [Batrachuperus londongensis] Length = 459 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 134/397 (33%), Positives = 222/397 (55%), Gaps = 20/397 (5%) Query: 40 ISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFC 99 ++T + I ++F +F+ M+ Y +G+D +S L++LT +L P Sbjct: 27 MTTNSMIIAMFSLIMFNLPSEHMIMVNKY----------MGLDPLSSPLLILTCWLLPMM 76 Query: 100 ILSSW---KSIQENF-REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 IL+S K+ EN R Y+ ++L++ +I AF + +M++FYI FEA+LIP +II W Sbjct: 77 ILASQNHLKNTPENRQRTYITMMIILQTSLILAFTATEMIMFYIAFEATLIPTLIIITRW 136 Query: 156 GG-SERIYAAYKFFLYTFFGSIFMLFAIVVM---CWEKKTSSIIDLYAMSKFPFSIQYWM 211 G +ER+ A F YT GS+ +L A++ + + + +S + W Sbjct: 137 GNQAERLNAGTYFLFYTLTGSLPLLVALLTLQNFSGSLSLLLLELINPTQLMMYSDKIW- 195 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL+ Sbjct: 196 WVACLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISIMLTPLSK 255 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 + P I L+L +I S++ M QTD+K LIAYSS++HMG V + G + Sbjct: 256 ELSYPFII-LALWGVIMTSMICMRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSLSGMII 314 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 M+SHGL+SSALF + Y+R H+R + G +P A ++ ++NM LP + Sbjct: 315 LMISHGLISSALFCLANMNYERTHSRTLLLMRGTQTMLPLMATWWLLVNLSNMALPPSLN 374 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 GE +++S+F SN ++ G +++A Y+L+++ Sbjct: 375 LWGELTIMVSLFNWSNWTILITGIGTLITASYTLYMF 411 >gi|300507571|dbj|BAJ11191.1| NADH dehydrogenase subunit-4 [Cobitis striata] gi|300507576|dbj|BAJ11195.1| NADH dehydrogenase subunit-4 [Cobitis striata] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHINSEPINRQRLYITLLVSLQAFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLYSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF +Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTVYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTATWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTP-SHITGLTPFHTREHLLL 438 >gi|39981089|gb|AAR33078.1| NADH dehydrogenase subunit 4 [Balaenoptera acutorostrata] Length = 459 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 129/356 (36%), Positives = 205/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + R+ Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLILTMWLLPLMLMASQSHLIKEPPIRKKLYITMLVTLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI EA+LIP II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YIMXEATLIPTLXIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALMYL---QNTTGTLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAQPLSTSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSSI+HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSISHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MS+F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSIFSWSNPTILLMGTNIVITALYSLYM 410 >gi|308745811|ref|YP_003934232.1| NADH dehydrogenase subunit 4 [Kinosternon leucostomum] gi|227437218|gb|ACP30418.1| NADH dehydrogenase subunit 4 [Kinosternon leucostomum] Length = 455 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 205/366 (56%), Gaps = 8/366 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 +Y +GVD IS LL+ L+ +LTP +L+S + R + I ++L+ +I AF + Sbjct: 53 NYFMGVDQISSLLITLSCWLTPLMLLASQNHLTTEPITRKRTFTITIIILQISLILAFST 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++F+I FE +LIP V+I WG ER+ A F YT GS+ +L A++ + Sbjct: 113 TELIMFFIMFETTLIPTVVMITRWGNQVERLNAGTYFLFYTLIGSLPLLIALLSFNTKNG 172 Query: 191 TSSI-IDLYAMSKFPFSIQYWMW-IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 T + L + P + + MW A +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 173 TLHLCTTLLNQTPVPNTWTHTMWSFALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + +PL + P L+L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGIMRTTMATYPLPKKLHYPFTI-LALWGLIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 AHMG V + K GA M++HGL SS LF Y+R H+R + + Sbjct: 292 AHMGLVIAATLTQTKKAYTGATTLMIAHGLTSSMLFCLANTNYERTHSRMLLLTQNMQLL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A ++ ++ NM LP T +GE ++I+++F S+ ++ G +++A+Y+L+++ Sbjct: 352 LPLMATWWLLASLTNMALPPTVNLMGELIMIVAIFNWSHVTILMTGLGALITAIYTLYMF 411 Query: 429 RKVVFG 434 + Sbjct: 412 SSTQWN 417 >gi|84579611|dbj|BAE72195.1| NADH dehydrogenase subunit 4 [Oryzias latipes] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 137/385 (35%), Positives = 213/385 (55%), Gaps = 17/385 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + + N + I+ L+ L+ +I AF + +M Sbjct: 57 IATDPLSTPLLVLTCWLLPLMILASQNHMAKEPINRQRVYISLLISLQIFLILAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + ++ Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL---QNSTG 173 Query: 194 IIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + FP + ++W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSFLTTPFFPPLLLHTEASKFW-WAGCLLAFLVKMPLYGTHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL Q P I L+L I+ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGIVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A +FT+AN+ LP +GE ++I S+F SN +L G +++A YSL + Sbjct: 352 VLPLLATWWFLFTLANLALPPLPNLMGELMIITSLFNWSNWTLLLTGAGTLITASYSLHM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRER 452 + G V ++ RE Sbjct: 412 FLTTQRG-PITNPVLAIEPTHTREH 435 >gi|192351971|ref|YP_001974523.2| NADH dehydrogenase subunit 4 [Sphoeroides pachygaster] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 137/393 (34%), Positives = 218/393 (55%), Gaps = 17/393 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F + +L D +S L++L+ +L P IL+S N + +I+ L+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTTYDPINRQRMLISLLISLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 ASTEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--- 168 Query: 189 KKTSSIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 +K++ + L M P ++ + W W +F +K+P++ H WLP AHV+AP A Sbjct: 169 QKSNGSLSLLTMLHSPATQLTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPVA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K L Sbjct: 228 GSMILAAVLLKLGGYGMMRILVVLEPLTKELSYPFIV-LALWGVIMTGSICLRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 287 IAYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLA 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P + ++AN+ LP +GE ++I S+F S +L G +++A Sbjct: 347 RGLQMALPLMTAWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTIILTGLGTLITAG 406 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 YSL+++ G S + L+ RE +V Sbjct: 407 YSLYMFLMTQRGPSPSHML-ALEPSHTREHLLV 438 >gi|119360437|ref|YP_913571.1| NADH dehydrogenase subunit 4 [Barbus trimaculatus] gi|119225271|dbj|BAF41632.1| NADH dehydrogenase subunit 4 [Barbus trimaculatus] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 139/399 (34%), Positives = 215/399 (53%), Gaps = 17/399 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINTEPISRQRLYITLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYTQPLQLNPWSHLIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L P + + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLNPPSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLASSALFCLANTAYERTHSRTMVLARGLQTI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + + L+ RE + + PI +L V Sbjct: 413 LTSQRGPTP-NHIMGLQPYHSREHLLMTMHLLPITLLVV 450 >gi|260766580|gb|ACX50318.1| NADH dehydrogenase subunit 4 [Catostomus nebuliferus] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPIGRQRLYISLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TELVMFYIMFEATLIPTLVIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ + P I+ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMIILQYSQPLIIESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFAANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + V L RE ++ Sbjct: 411 LFLMSQRGPTPTHIV-GLPPFHTREHLLM 438 >gi|120586734|ref|YP_961378.1| NADH dehydrogenase subunit 4 [Oncorhynchus masou masou] gi|110810363|gb|ABG91542.1| NADH dehydrogenase subunit 4 [Oncorhynchus masou masou] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRAYISLLVSLQTFLVLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDSG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L M P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYMQ--PMHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVVLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFSGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFMASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + L+ RE ++ Sbjct: 411 LFLMTQRGPLPSHII-ALEPTHTREHLLI 438 >gi|283099257|ref|YP_003359309.1| NADH dehydrogenase subunit 4 [Acheilognathus koreensis] gi|146142381|gb|ABQ01643.1| NADH dehydrogenase subunit 4 [Acheilognathus koreensis] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 201/359 (55%), Gaps = 12/359 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NEYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLVVQYAQPLVLDSWSDKIWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P AV + +AN+ LP +GE ++I ++F S T L G +++A YSL Sbjct: 351 MIFPLTAVWWFITNLANLALPPLPNLMGELMIITTLFNWSPTTIALTGLGTLITAGYSL 409 >gi|280978289|ref|YP_003345225.1| NADH dehydrogenase subunit 4 [Thalassenchelys sp. Tht2] gi|271280737|dbj|BAI53492.1| NADH dehydrogenase subunit 4 [Thalassenchelys sp. Tht2] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 134/389 (34%), Positives = 211/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +SI L+VL+ +L P IL+S + R Y+ + L+ ++ AF + Sbjct: 54 NLYLATDPLSIPLLVLSCWLLPLMILASQNHMATEPINRQRSYITLLISLQILLTLAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 114 TEIIMFYIMFEATLIPTLTIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLTL--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLTMQYTKPLALSSWGDKAWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLTPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MVLPLMAAWWFIANLANLALPPLPNLMGELMIITSLFNWSYWSIILTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L RE ++ Sbjct: 411 MFLMTQRGPTP-NHIIGLDPSHTREHLLI 438 >gi|154940286|gb|ABS88958.1| NADH dehydrogenase subunit 4 [Sebastes ruberrimus] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 134/358 (37%), Positives = 203/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQSHTALEPINRQRTYISLLTSLQVFLIMAFGATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + + S Sbjct: 117 LMFYVMFEATLIPTLIIITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLLLQKDTGSLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ + S P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTIQYASSTPLSSYADKLW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR ++ L PL + P I L+L +I + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMVMLEPLTKELSYPFII-LALWGVIMTGSTCLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G+ GA+ M++HGL SSALF Y+RLH+R + GL +P Sbjct: 295 MGLVVGGILIQTPWGLAGAVILMIAHGLTSSALFCLANTNYERLHSRTMLLARGLQMVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE L+I S+F S VL G +++A YSL+++ Sbjct: 355 LMATWWFIASLANLALPPLPNLMGELLIITSLFGWSWWTLVLTGAGTLITASYSLYMF 412 >gi|37960066|gb|AAP47876.1| NADH dehydrogenase subunit 4 [Bos taurus] Length = 474 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I L+ L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLISLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPIHNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|260766550|gb|ACX50298.1| NADH dehydrogenase subunit 4 [Catostomus ardens] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 206/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TELVMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMMILQYSQPLVLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV +AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFAANLANLALPPLPNLMGELMIITSLFSWSPWTIALTGVGTLITAGYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|330371454|gb|AEC12710.1| NADH dehydrogenase subunit 4 [Hypselobarbus kurali] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTATWWFLANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L+ RE ++ Sbjct: 413 LMSQRG-QVPNHITGLQPFHTREHLLM 438 >gi|116235411|ref|YP_794158.1| NADH dehydrogenase subunit 4 [Muntiacus reevesi micrurus] gi|116006453|gb|ABJ51759.1| NADH dehydrogenase subunit 4 [Muntiacus reevesi micrurus] Length = 459 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P + +S + + + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLTASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAAELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|84579583|dbj|BAE72169.1| NADH dehydrogenase subunit 4 [Oryzias latipes] gi|253960431|dbj|BAH84915.1| NADH dehydrogenase subunit 4 [Oryzias latipes] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 137/385 (35%), Positives = 213/385 (55%), Gaps = 17/385 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + + N + I+ L+ L+ +I AF + +M Sbjct: 57 IATDPLSTPLLVLTCWLLPLMILASQNHMAKEPINRQRVYISLLISLQIFLILAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + ++ Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL---QNSTG 173 Query: 194 IIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + FP + ++W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSFLTTPFFPPLLLHTEASKFW-WAGCLLAFLVKMPLYGTHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL Q P I L+L I+ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGIVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A +FT+AN+ LP +GE ++I S+F SN +L G +++A YSL + Sbjct: 352 VLPLLATWWFLFTLANLALPPLPNLMGELMIITSLFNWSNWTLLLTGAGTLITASYSLHM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRER 452 + G V ++ RE Sbjct: 412 FLTTQRG-PITNPVLAIEPTHTREH 435 >gi|166240031|ref|YP_214910.2| NADH dehydrogenase subunit 4 [Oncorhynchus clarkii henshawi] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 216/399 (54%), Gaps = 17/399 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRAYISLLVSLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDNG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYTQ--PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFMASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV----YPIAVL 461 L+ G V L+ RE ++ PIA+L Sbjct: 411 LFLMTQRG-PLPSHVIALEPTHTREHLLIILHLTPIALL 448 >gi|2829036|gb|AAD10073.1| NADH ubiquinone oxidoreductase subunit 4 [Pseudobrama simoni] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPIARQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|198400371|ref|YP_002221311.1| NADH dehydrogenase subunit 4 [Distoechodon tumirostris] gi|63081775|gb|AAY30641.1| NADH dehydrogenase subunit 4 [Distoechodon tumirostris] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|327492761|ref|YP_004347648.1| NADH dehydrogenase subunit 4 [Marilyna darwinii] gi|327392626|dbj|BAK10051.1| NADH dehydrogenase subunit 4 [Marilyna darwinii] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 132/374 (35%), Positives = 210/374 (56%), Gaps = 10/374 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S K + QE R Y+ + L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQKHTSQEPLNRQRMYISLLISLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M+LFY+ FEA+LIP ++I WG ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMILFYVMFEATLIPTLILITRWGNQKERLNAGTYFLFYTLAGSLPLLVALLILQNN 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + +S + W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLTLMFSPHVEMHSYSDKIW-WVGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L++ +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILITLEPLTRELSYPFII-LAMWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVIGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP T +GE ++I S+F S L G +++A YSL Sbjct: 350 QVMLPLMTTWWFISSLANLALPPTPNLMGELMIITSLFNWSPVTIALTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCE 439 +++ G + Sbjct: 410 YMFLMTQRGPTPTH 423 >gi|2829057|gb|AAD10087.1| NADH ubiquinone oxidoreductase subunit 4 [Xenocypris fangi] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|295792445|gb|ADG29219.1| NADH dehydrogenase subunit 4 [Hypophthalmichthys nobilis] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLSSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-SHITKLPPFHTREHLLM 438 >gi|5836012|ref|NP_008773.1|ND4_15100 NADH dehydrogenase subunit 4 [Chelonia mydas] gi|5103698|dbj|BAA79206.1| NADH dehydrogenase subunit 4 [Chelonia mydas] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 131/392 (33%), Positives = 216/392 (55%), Gaps = 15/392 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F +Y+LGVD IS L++L+ +LTP IL+S + R ++ ++L+ +I AF Sbjct: 52 FSNYYLGVDQISAPLLILSCWLTPLMILASQNHLTTEPTSRKRTFIFTIILLQISLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE +LIP VII WG ER+ A F YT GS+ +L A++ + E Sbjct: 112 STTELIMFFITFETTLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLIALLSLNTE 171 Query: 189 KKTSSIIDLYAMS-KFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + + ++ M P + W W A +F IK+P++ H WLP AHV+AP AG Sbjct: 172 NGS---LSMHTMQLNQPTMLNSWTHMTWWFALLMAFMIKMPLYGLHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG IR + L PL+ P + L+L +I S + + QTD+K LI Sbjct: 229 SMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMV-LALWGVIMTSSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 288 AYSSVSHMGLVIASTLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 + +P ++ ++ ++ NM LP T +GE +I S+F SN ++ G +++A Y Sbjct: 348 NMQLLLPLMSLWWLLASLTNMALPPTINLMGELTIIASLFNWSNITILMTGLGTLITATY 407 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +L++ +G + ++ + RE ++ Sbjct: 408 TLYMLSTTQWGETP-SYIKTIPPTHTREHLLM 438 >gi|260766595|gb|ACX50328.1| NADH dehydrogenase subunit 4 [Catostomus warnerensis] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 134/360 (37%), Positives = 204/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLVSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LVMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMMILQYSQPLILESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMVAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I S+F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFAANLANLALPPLPNLMGELMIITSLFSWSPWTIALTGVGTLITAGYSLYLF 412 >gi|156186511|gb|ABU55499.1| NADH dehydrogenase subunit 4 [Opsaridium sp. CTOL439] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 211/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S +LG D +S L+VLT +L P IL+S + R Y+ + L++ +I AF + Sbjct: 54 SAYLGADPLSTPLLVLTCWLLPLMILASQNHLNPEPINRQRLYITLLVSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG ++R+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQNDRLNAGVYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L + P + W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 AGTLSMLMLPNTEPLLMNTWGYKIWWVGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ PL+ Q P I L+L II L+ + QTD+K L+AYS Sbjct: 232 LAAVLLKLGGYGMMRIMVVSGPLSQQLIYPFII-LALWGIIMTGLMCLRQTDLKSLVAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFSGAIIXMVAHGLASSALFCLANTAYERTHSRTMILARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ +P +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MLFPLTAVWWFMANLANLAMPPLPNLMGELMIITALFNWSPWTVALTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G L RE ++ Sbjct: 411 MFLTSQRGQVPSHAT-SLPPFHTREHLLI 438 >gi|28301764|ref|NP_783564.1| NADH dehydrogenase subunit 4 [Muntiacus muntjak] gi|28207786|gb|AAO32137.1| NADH dehydrogenase subunit 4 [Muntiacus muntjak] Length = 459 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYWM------------WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYWM W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWMQPLSSSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSGYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|84579625|dbj|BAE72208.1| NADH dehydrogenase subunit 4 [Oryzias latipes] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 137/385 (35%), Positives = 213/385 (55%), Gaps = 17/385 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + + N + I+ L+ L+ +I AF + +M Sbjct: 57 IATDPLSTPLLVLTCWLLPLMILASQNHMAKEPINRQRVYISLLISLQIFLILAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + ++ Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL---QNSTG 173 Query: 194 IIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + FP + ++W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSFLTTPFFPPLLLHTEASKFW-WAGCLLAFLVKMPLYGTHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL Q P I L+L I+ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGIVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A +FT+AN+ LP +GE ++I S+F SN +L G +++A YSL + Sbjct: 352 VLPLLATWWFLFTLANLALPPLPNLMGELMIITSLFNWSNWTLLLTGAGALITASYSLHM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRER 452 + G V ++ RE Sbjct: 412 FLTTQRG-PITNPVLAIEPTHTREH 435 >gi|312233359|ref|YP_004021571.1| NADH dehydrogenase subunit 4 [Leiopelma archeyi] gi|296041084|gb|ADG85499.1| NADH dehydrogenase subunit 4 [Leiopelma archeyi] Length = 459 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/386 (35%), Positives = 209/386 (54%), Gaps = 12/386 (3%) Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWK--SIQENFRE-- 113 SS ++ ++F + +D +S L+VLT +L P IL+S K SI+ R+ Sbjct: 35 ATSSLMLLHSTSETNHFITNITTIDQLSSPLLVLTCWLLPLMILASQKHLSIEPPTRQRT 94 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 Y+ L L+ +I AF + +++LFY+ FE +LIP +II WG +ER+ A F YT Sbjct: 95 YITILLSLQISLIMAFSASELVLFYVMFETTLIPTLIIITRWGNQAERLTAGVYFLFYTL 154 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPF 228 GS+ +L A++ T S+ L +S+ P W W A +F +K+P++ Sbjct: 155 TGSMPLLIALLTTHNSSGTLSLTIL-QLSQ-PTITTTWTNHLWWAACLVAFLVKMPLYGA 212 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA I+LK+GGYG +R + L P+ P I L+L +I Sbjct: 213 HLWLPKAHVEAPIAGSMVLAAILLKLGGYGIMRISIMLTPMTKDLVYPFIV-LALWGVIM 271 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 S V + QTD+K +IAYSS++HMG V GA+ M++HGLVSS LF Sbjct: 272 TSSVCLRQTDLKSMIAYSSVSHMGLVIAATLIQTPWSFTGAILLMIAHGLVSSLLFCLAN 331 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 Y+R H+R + G+ +P ++ +ANM LP +GE +++S+F SN Sbjct: 332 TNYERTHSRTLILTRGMQTILPLMGTWWLLSNLANMALPPFPNLMGELTIMVSLFNWSNL 391 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFG 434 +L G +++A YSL+++ G Sbjct: 392 TIILTGLGTLMTAGYSLYMFLTTQRG 417 >gi|280978107|ref|YP_003345056.1| NADH dehydrogenase subunit 4 [Simenchelys parasitica] gi|271280409|dbj|BAI53259.1| NADH dehydrogenase subunit 4 [Simenchelys parasitica] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VL+ +L P IL+S + R Y+ + L+ + AF + Sbjct: 54 SLYLATDPLSTPLLVLSCWLLPLMILASQNHMMPEPVGRQRTYITLLISLQMFLTMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLALQKDLG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ + S P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMLTIQYTS--PLTLYSWGDKIWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L P+ + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVVLTPMTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLTRGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MVLPLMAAWWFITNLANLALPPLPNLMGELMIITSMFNWSYWTIILTGLGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE MV Sbjct: 411 MFLMTQRGPTP-NHIIGLEPSYTREHLMV 438 >gi|161760606|ref|YP_001595581.1| NADH dehydrogenase subunit 4 [Puntius tetrazona] gi|161172448|gb|ABX59334.1| NADH dehydrogenase subunit 4 [Puntius tetrazona] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 139/396 (35%), Positives = 217/396 (54%), Gaps = 20/396 (5%) Query: 73 YFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIG 127 + CS +L D +S L+VLT +L P IL+S + R Y+ +L++ +I Sbjct: 50 WTCSNPYLATDPLSTPLLVLTCWLLPLMILASQNHMNPEPINRQRSYITLLALLQTFLIM 109 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 AF + ++L+FYI FEA+LIP +II WG ER+ A F YT GS+ +L A++ + Sbjct: 110 AFGATEILMFYIMFEATLIPTLIIITRWGNQVERLNAGTYFLFYTLAGSLPLLIALLTL- 168 Query: 187 WEKKTSSIIDLYAMSKFPFSIQY-------WMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + TS + + + ++P S Q W W +F +K+P++ H WLP AHV+A Sbjct: 169 --QTTSGTLSMLIL-QYPESSQLDSWGNTLW-WAGCLIAFLVKMPLYGVHLWLPKAHVEA 224 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGS+ LA ++LK+GGYG +R ++ L P + P I L+L II + + QTD+ Sbjct: 225 PVAGSMVLAAVLLKLGGYGMMRVMVMLNPPPQELTYPFII-LALWGIIMTGSICLRQTDL 283 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K LIAYSS++HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + Sbjct: 284 KLLIAYSSVSHMGLVAAGILTQTSWGFSGAIILMIAHGLVSSALFCLANSAYERTHSRTM 343 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL P A + +AN+ LP +GE ++I+++F S +L G ++ Sbjct: 344 MLARGLQAIFPLAATWWFIANLANLALPPLPNLMGELMIIVTMFNWSPWTILLTGLGTLI 403 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +A YSL+++ G + + L+ RE ++ Sbjct: 404 TAGYSLYMFLMSQRGQTP-NHIMGLQPYHTREHLLM 438 >gi|120586762|ref|YP_961339.1| NADH dehydrogenase subunit 4 [Opsariichthys bidens] gi|86450358|gb|ABC96655.1| NADH dehydrogenase subunit 4 [Opsariichthys bidens] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPITRQRLYITLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYSQPLLLDSWGHKIWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELVYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGVGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L RE ++ Sbjct: 411 MFLMSQRGPTPAH-IMKLPPFHTREHLLM 438 >gi|326536045|ref|YP_004300481.1| NADH dehydrogenase subunit 4 [Mallotus villosus] gi|311788460|gb|ADQ12845.1| NADH dehydrogenase subunit 4 [Mallotus villosus] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 133/360 (36%), Positives = 203/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHISPEPINRQRTYISLMASLQMFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ E T Sbjct: 116 IIMFYVMFEATLVPTLLIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNETGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+I L P + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITL--QYSQPLQLSTWGDKLWWVGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R +L L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMLMLDPLSKELAYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTAYERTHSRTMLLARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A V +AN+ LP +GE ++I ++F S V+ G +++A YSL+L+ Sbjct: 353 LPLMATWWFVANLANLALPPLPNLMGELMIITAMFNWSYWTIVITGVGTLITASYSLYLF 412 >gi|119360521|ref|YP_913584.1| NADH dehydrogenase subunit 4 [Ischikauia steenackeri] gi|119225285|dbj|BAF41645.1| NADH dehydrogenase subunit 4 [Ischikauia steenackeri] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIVLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|317097270|ref|YP_004123474.1| NADH dehydrogenase subunit 4 [Procapra przewalskii] gi|284176537|gb|ADB81003.1| NADH dehydrogenase subunit 4 [Procapra przewalskii] Length = 459 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSMPLLILTMWLLPLMLMASQHHLSKENLIRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LM--------LQYWVQPMSNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ P I+ SL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLLLNPVTELMGMP-IYQWSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|300470656|dbj|BAJ11143.1| NADH dehydrogenase subunit-4 [Cobitis biwae] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NHYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVFLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLHSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLAAAWWFIANLANLALPPLPNLMGELAIISTLFNWSPWTILLTGVGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTP-PHITGLPPFHTREHLLL 438 >gi|283099327|ref|YP_003359494.1| NADH dehydrogenase subunit 4 [Acheilognathus macropterus] gi|146142424|gb|ABQ01682.1| NADH dehydrogenase subunit 4 [Acheilognathus macropterus] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 H D +S L+VLT +L P IL+S I+ R Y L++ +I AF + + Sbjct: 56 HPATDPLSTPLLVLTCWLLPLMILASQNHIKPEPINRQRLYTSLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSILVVQYAQPLMLRSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPFAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMILLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A V +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAAWWFVANLANLALPPLPNLMGELMIITTLFNWSPVTIALTGMGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSHII-KLPPFHTREHLLM 438 >gi|196167857|ref|YP_002128431.1| NADH dehydrogenase subunit 4 [Mylopharyngodon piceus] gi|195969567|gb|ACG60612.1| NADH dehydrogenase subunit 4 [Mylopharyngodon piceus] gi|195969595|gb|ACG60638.1| NADH dehydrogenase subunit 4 [Mylopharyngodon piceus] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLDSWSHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|162382077|ref|YP_001604433.1| NADH dehydrogenase subunit 4 [Hypophthalmichthys molitrix] gi|161824402|gb|ABX79776.1| NADH dehydrogenase subunit 4 [Hypophthalmichthys molitrix] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLSSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-SHITKLPPFHTREHLLM 438 >gi|6648655|gb|AAF21278.1| NADH ubiquinone oxidoreductase subunit 4 [Megalobrama skolkovii] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 TIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPMLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|226453367|ref|YP_002791116.1| NADH dehydrogenase subunit 4 [Fundulus heteroclitus] gi|215511516|gb|ACJ67962.1| NADH dehydrogenase subunit 4 [Fundulus heteroclitus] gi|215511530|gb|ACJ67975.1| NADH dehydrogenase subunit 4 [Fundulus heteroclitus] gi|215511558|gb|ACJ68001.1| NADH dehydrogenase subunit 4 [Fundulus heteroclitus] gi|215511572|gb|ACJ68014.1| NADH dehydrogenase subunit 4 [Fundulus heteroclitus] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 207/365 (56%), Gaps = 12/365 (3%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGA 128 ++ + ++ D +S L+VLT +L P I++S + EN + I+ L+ L+ +I A Sbjct: 51 FYINNYMAYDPLSSPLLVLTCWLLPLMIIASQNHLAVEPENRQRTYISLLISLQIFLILA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVV--- 184 F + +M++FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A+++ Sbjct: 111 FSATEMIMFYVMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVALLIYHS 170 Query: 185 -MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M S S ++ + W W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 171 SMGSLSYLSLTSLPLTCSNL-YADKLW-WMACLLAFLVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRIMIILDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R I Sbjct: 288 AYSSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTIILAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A + ++AN+ LP +GE ++I S+F S +L G +++A Y Sbjct: 348 GLQMVLPLMATWWFLASLANLALPPLPNLMGEIMIITSLFNWSFYTLILTGLGTLITASY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|4379167|emb|CAA24009.1| unnamed protein product [Bos taurus] gi|19919702|gb|AAM08326.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|19919716|gb|AAM08339.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|20149077|gb|AAM12798.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|20149091|gb|AAM12811.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|37960024|gb|AAP47837.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|37960038|gb|AAP47850.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|37960052|gb|AAP47863.1| NADH dehydrogenase subunit 4 [Bos taurus] Length = 474 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I L+ L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLISLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPVHNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|2829060|gb|AAD10089.1| NADH ubiquinone oxidoreductase subunit 4 [Plagiognathops microlepis] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/384 (35%), Positives = 209/384 (54%), Gaps = 13/384 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVMQYSQPLLLHSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRER 452 G + + +L RE Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREH 435 >gi|289183073|ref|YP_003457066.1| NADH dehydrogenase subunit 4 [Himantolophus groenlandicus] gi|288908893|dbj|BAI77140.1| NADH dehydrogenase subunit 4 [Himantolophus groenlandicus] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 204/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + H+ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + Sbjct: 54 NLHMATDPLSTPLLVLTCWLLPLMILASQNHMAPEPLNRQRTYITLLTSLQLFLIVAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP ++I WG ++R+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLILITRWGNQTQRLNAGTYFLFYTLAGSLPLLVALLLLQNNTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L+ S P + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLHYSSPTPLTTYADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I F +L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLVTLEPLTKELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + ++AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 LLPLMASWWFIASLANLALPPLPNLMGELMILTSLFNWSYWTLALTGAGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|310788870|gb|ADP24438.1| NADH dehydrogenase subunit 4 [Balantiocheilos melanopterus] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 137/390 (35%), Positives = 214/390 (54%), Gaps = 15/390 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRSYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQ-----YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVLQYSQPLQLNSLGHMIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL Sbjct: 350 QVIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + + L+ RE ++ Sbjct: 410 YMFLMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|284794683|ref|YP_003412040.1| NADH dehydrogenase subunit 4 [Gila conspersa] gi|284507237|dbj|BAI67666.1| NADH dehydrogenase subunit-4 [Gila conspersa] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y++ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHVNSEPVSRQRLYIMLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYAQPMLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMVAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L RE ++ Sbjct: 411 MFLMSQRGPAPSH-IMKLPPFHTREHLLM 438 >gi|195969581|gb|ACG60625.1| NADH dehydrogenase subunit 4 [Mylopharyngodon piceus] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|119360703|ref|YP_913662.1| NADH dehydrogenase subunit 4 [Homaloptera leonardi] gi|119225369|dbj|BAF41723.1| NADH dehydrogenase subunit 4 [Homaloptera leonardi] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 143/395 (36%), Positives = 217/395 (54%), Gaps = 13/395 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L++LT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLILTCWLLPLMILASQNHIAHEPITRQRLYITLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQQSTGTL 175 Query: 193 SIIDL-YAMSKFPFSIQYWMWIA-FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 S++ L Y P S Y +W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 SMLILQYYQLPTPDSWGYKIWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L P + + P I L+L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMVRMMVILDPQSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G+ GA+ M++HGLVSSALF Y+R H+R + GL P Sbjct: 295 MGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTTYERTHSRTMILARGLQMIFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 355 LTATWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTITLTGAGTLITAAYSLYLFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV----YPIAVL 461 G S + L RE ++ P+A+L Sbjct: 415 SQRG-SAPTHITGLPPFHTREHLLISLHLIPLALL 448 >gi|119360215|ref|YP_913337.1| NADH dehydrogenase subunit 4 [Tinca tinca] gi|119225019|dbj|BAF41398.1| NADH dehydrogenase subunit 4 [Tinca tinca] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLSSSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFTANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGIGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITKLQPFHTREHLLM 438 >gi|82492310|gb|ABB78047.1| NADH dehydrogenase subunit 4 [Oncorhynchus mykiss] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 203/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRAYISLLVSLQTFLVLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDNG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYTQ--PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P V ++ANM LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFVASLANMALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|58202184|gb|AAW67152.1| ND4 [Oncorhynchus clarkii henshawi] Length = 461 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 216/399 (54%), Gaps = 17/399 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRAYISLLVSLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDNG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYTQ--PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFMASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV----YPIAVL 461 L+ G V L+ RE ++ PIA+L Sbjct: 411 LFLMTQRG-PLPSHVIALEPTHTREHLLIILHLTPIALL 448 >gi|26284405|gb|AAN84906.1|AF460846_10 NADH subunit 4 [Galeopterus variegatus] Length = 459 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 128/381 (33%), Positives = 207/381 (54%), Gaps = 9/381 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S + + + Y+ ++L+ +I F + ++++F Sbjct: 59 DPLSSPLLMLTTWLLPLMIMASQHHLSKEMYTRKKLYITMLILLQLFLIMTFTATELMMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG ER+ A F YT FGS+ +L A+ + + +++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQPERLNAGLYFLFYTLFGSMPLLIALTYIHNSAGSLNLLL 178 Query: 197 L--YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L + P +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LPFWTQISPPLWSNTLLWMACMIAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P + P + LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITIILNPPTTPMAYPFLI-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I G GA M++HGL SS LF Y+R+H R + GL +P A Sbjct: 298 IVAILIQTPWGFTGATTLMVAHGLTSSLLFCLANSNYERIHNRTMILARGLQMLLPLTAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+M+ F SN + ++++ALY+L++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVMMTAFSWSNITIIFTGLNMLITALYTLFMLTTTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCMV 455 + + +K RE ++ Sbjct: 418 -TFTHHINNIKPTFTRENSLM 437 >gi|310788922|gb|ADP24464.1| NADH dehydrogenase subunit 4 [Tor tambroides] Length = 457 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 203/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 53 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRSYISLLASLQTFLIMAFGATE 112 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 113 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 170 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 TLSMLVLQYSQPLQLNSWGHMVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 230 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 231 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 289 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 290 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 349 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 350 FPLTATWWFLANLANLALPPLPNLMGELMIITTLFSWSPWTILLTGLGTLITAGYSLYMF 409 >gi|148922722|ref|YP_001293823.1| NADH dehydrogenase subunit 4 [Spratelloides gracilis] gi|148762698|dbj|BAF64136.1| NADH dehydrogenase subunit 4 [Spratelloides gracilis] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 208/364 (57%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + + GVD +S L+VL+ +L P IL+S ++ R Y+ L++ +I AF Sbjct: 52 FSNSYTGVDPLSSPLLVLSCWLLPLMILASQNHTRQEPHSRQRVYISLLTSLQAFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 112 GATEIIMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLQAS 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T S++ + ++ P ++ W W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 TGTLSMLTMNFIT--PLTLSSWGDKIWWVACLLAFLVKMPLYGVHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMIRMTCVLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L P A V +AN+ LP +GE ++I ++F S ++ G +++A YS Sbjct: 349 LQVLFPLTATWWFVANLANLALPPLPNLMGELMIITTLFNWSPWTLIITGVGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|330371425|gb|AEC12687.1| NADH dehydrogenase subunit 4 [Puntius jerdoni] gi|330371434|gb|AEC12694.1| NADH dehydrogenase subunit 4 [Hypselobarbus lithopidos] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRSYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTTWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTATWWFLANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L+ RE ++ Sbjct: 413 LMSQRG-QVPNHITGLQPFHTREHLLM 438 >gi|310788882|gb|ADP24444.1| NADH dehydrogenase subunit 4 [Tor sinensis] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYISLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTSWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 VIFPLTATWWFLANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + L+ RE ++ Sbjct: 411 MFLMSQRG-QVPNHIMGLQPFHTREHLLM 438 >gi|6648634|gb|AAF21264.1| NADH ubiquinone oxidoreductase subunit 4 [Hypophthalmichthys nobilis] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLSSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-SHITKLPPFHTREHLLM 438 >gi|215511586|gb|ACJ68027.1| NADH dehydrogenase subunit 4 [Fundulus heteroclitus] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 207/365 (56%), Gaps = 12/365 (3%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGA 128 ++ + ++ D +S L+VLT +L P I++S + EN + I+ L+ L+ +I A Sbjct: 51 FYINNYMAYDPLSSPLLVLTCWLLPLMIIASQNHLAVEPENRQRTYISLLISLQIFLILA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVV--- 184 F + +M++FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A+++ Sbjct: 111 FSATEMIMFYVMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVALLIYHS 170 Query: 185 -MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M S S ++ + W W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 171 SMGSLSYLSLTSLPLTCSNL-YANKLW-WMACLLAFLVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRIMIILDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R I Sbjct: 288 AYSSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTIILAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A + ++AN+ LP +GE ++I S+F S +L G +++A Y Sbjct: 348 GLQMVLPLMATWWFLASLANLALPPLPNLMGEIMIITSLFNWSFYTLILTGLGTLITASY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|12583918|gb|AAG59677.1| NADH dehydrogenase subunit 4 [Muntiacus crinifrons] Length = 459 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P + +S + + + Y+ ++L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLTASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYWM------------WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYWM W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWMQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|2829054|gb|AAD10085.1| NADH ubiquinone oxidoreductase subunit 4 [Xenocypris davidi] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNHTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|146142454|gb|ABQ01708.1| NADH dehydrogenase subunit 4 [Rhodeus uyekii] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 208/387 (53%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 HL D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 HLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYLSLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLLIQYAQPLVLNSWSDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V I G GA+ M +HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGAILIQTPWGFTGAIILMPAHGLVSSMLFCLANTAYERTHSRTMILARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P V + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 LPLATVWWFISNLANLALPPLPNLMGELMIITALFNWSPATIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMTQRGPAP-NHIINLPPFHTREHLLM 438 >gi|63081831|gb|AAY30693.1| NADH dehydrogenase subunit 4 [Mylopharyngodon piceus] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|255506448|ref|YP_003097199.1| NADH dehydrogenase subunit 4 [Xenocypris davidi] gi|2829033|gb|AAD10071.1| NADH ubiquinone oxidoreductase subunit 4 [Xenocypris davidi] gi|254547196|gb|ACT66670.1| NADH dehydrogenase subunit 4 [Xenocypris davidi] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|89885714|dbj|BAE86991.1| NADH dehydrogenase subunit 4 [Sphoeroides pachygaster] Length = 461 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 137/393 (34%), Positives = 218/393 (55%), Gaps = 17/393 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F + +L D +S L++L+ +L P IL+S N + +I+ L+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTTYDPINRQRMLISLLISLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 ASTEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--- 168 Query: 189 KKTSSIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 +K++ + L M P ++ + W W +F +K+P++ H WLP AHV+AP A Sbjct: 169 QKSNGSLSLLTMLHSPATQLTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPVA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K L Sbjct: 228 GSMILAAVLLKLGGYGMMRILVVLEPLTKELSYPFIV-LALWGVIMTGSICLRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 287 IAYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLA 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P + ++AN+ LP +GE ++I S+F S +L G +++A Sbjct: 347 RGLQMALPLMTAWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTIILTGLGTLITAG 406 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 YSL+++ G S + L+ RE +V Sbjct: 407 YSLYMFLMTQRGPSPSHML-ALEPSHTREHLLV 438 >gi|119360423|ref|YP_913545.1| NADH dehydrogenase subunit 4 [Pungtungia herzi] gi|119225243|dbj|BAF41606.1| NADH dehydrogenase subunit 4 [Pungtungia herzi] Length = 460 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P +L+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMMLASQNHINPEPINRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLVLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGTGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHIMKLPPFHTREHLLM 438 >gi|326536086|ref|YP_004300517.1| NADH dehydrogenase subunit 4 [Odocoileus virginianus] gi|309399262|gb|ADO78897.1| NADH dehydrogenase subunit 4 [Odocoileus virginianus] Length = 459 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRVTMFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|325126714|ref|YP_004285862.1| NADH dehydrogenase subunit 4 [Paralaubuca typus] gi|325053266|dbj|BAJ83467.1| NADH dehydrogenase subunit 4 [Paralaubuca typus] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ L P W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMLVIQYSQPMLSNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-ITKLPPFHTREHLLM 438 >gi|14587500|gb|AAK70534.1|AF224620_4 NADH dehydrogenase subunit 4 [Allocebus trichotis] gi|209447623|gb|ACI47097.1| NADH dehydrogenase subunit 4 [Allocebus trichotis] Length = 459 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 204/366 (55%), Gaps = 14/366 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P IL+S K + Y+ ++L+ +I F +++++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMILASQHHLAKETWTRKKLYLTMLVLLQVFLIMTFSAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP VII WG +ER+ A + F YT GS+ +L A++ + + + +++ Sbjct: 119 YILFEATLIPTLVIITRWGNQTERLNAGFYFLFYTLIGSLPLLVALIYIQYSLGSLNLLT 178 Query: 197 L-YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MTLSFQEMP---NLWYNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ P I L L +I S + + QTD+K LIAYSSI+HM Sbjct: 236 LKLGGYGMLRITMILNPMTKLMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSISHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP + IGE LV M+ F SN +L ++++ALYSL++ Sbjct: 355 MAAWWLLASLTNLALPPSINLIGELLVTMASFSWSNITIILTGLNMLITALYSLYMLTTT 414 Query: 432 VFGVSK 437 G S Sbjct: 415 QRGKST 420 >gi|538490|gb|AAA67410.1| presumptive protein 4 [Sceloporus grammicus] Length = 461 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 198/364 (54%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + L +D IS L+VL+ +L P +L+S ++ R +++ +L++ +I F Sbjct: 52 FSTPQLMIDPISAPLLVLSCWLLPLMVLASKNHLKSEPLHRKRMFLMTISILQTFLILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 ++++ L YI FEA+LIP +II WG ER+ A F YT S+ +L AI+ + Sbjct: 112 SAINLTLLYIMFEATLIPTLIIITRWGNQQERLTAGTYFLFYTLASSLPLLIAILYFNTK 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 SSI+ L P W MW A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 NHHSSIMLLQLTQ--PQLTNTWSDVFMWAACLLAFMVKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+G YG +R + L P+ + + P + L+L I+ S + M QTD+K L+A Sbjct: 230 MVLAAILLKLGSYGIMRITMLLMPMPPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLMA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GAM M++HGL SS LF Y+R HTR + G Sbjct: 289 YSSVSHMGLVIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 P + ++ + NM LP + +GE L+I+S+F SN +L G +++A YS Sbjct: 349 FQIIFPLMSTWWLMANLTNMALPPSINLMGELLIIVSLFNWSNLTILLTGLGTLITAAYS 408 Query: 425 LWLY 428 L ++ Sbjct: 409 LHMF 412 >gi|12583942|gb|AAG59693.1| NADH dehydrogenase subunit 4 [Elaphodus cephalophus] Length = 459 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLTRKKLYITMLILLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSL-- 174 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 F F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 175 -----NF-FVLQYWAKPLPNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITMFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|52459785|ref|YP_089645.1| NADH dehydrogenase subunit 4 [Gegeneophis ramaswamii] gi|42406102|gb|AAS13701.1| NADH dehydrogenase subunit 4 [Gegeneophis ramaswamii] Length = 458 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 206/373 (55%), Gaps = 8/373 (2%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVI 126 ++Y + L +D +S L++LT +LTP I++S + N R + F+ L+ + Sbjct: 49 LNYINKW-LAIDQLSSPLMILTCWLTPLMIIASQNHMMNNSPNNQRLLITTFIFLQFTLT 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AF S ++LLFYI FE++LIP +II WG ER+ A F YT GS+ +L A++V+ Sbjct: 108 LAFSSTELLLFYIMFESTLIPTLIIITRWGNQIERLNAGTYFLFYTLLGSLPLLIALLVL 167 Query: 186 CWEKKTSSIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + S+++L +++ P W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 168 QNFTGSLSMLNLQYLNQMQPNQTNNIWWTACLIAFMVKMPLYGLHLWLPKAHVEAPIAGS 227 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L P + P + +SL II SL+ + QTD+K LIA Sbjct: 228 MILAAILLKLGGYGIMRISIMLTPFTKECIYPFL-IISLWGIIMTSLICLRQTDLKSLIA 286 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V GA M++HGL SS LF Y+R H R + G Sbjct: 287 YSSVSHMALVISATLIQTPWSFTGAAILMIAHGLTSSMLFCLANTNYERTHNRTLILAQG 346 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ + NM LP ++ +GE ++ ++F SN +L G+ +A+YS Sbjct: 347 LQTILPLMTIWWLLANLTNMALPPSTNLMGELTIVTAMFNWSNLTIILTGMGITFTAIYS 406 Query: 425 LWLYRKVVFGVSK 437 L ++ G+++ Sbjct: 407 LHMFLMTQRGLTQ 419 >gi|280978261|ref|YP_003345199.1| NADH dehydrogenase subunit 4 [Culter alburnus] gi|269996118|gb|ACZ57382.1| NADH dehydrogenase subunit 4 [Culter alburnus] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-ITKLPPFHTREHLLM 438 >gi|120586776|ref|YP_961352.1| NADH dehydrogenase subunit 4 [Oncorhynchus masou formosanus] gi|110810335|gb|ABG91516.1| NADH dehydrogenase subunit 4 [Oncorhynchus masou formosanus] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRAYISLLVSLQTFLVLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDSG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L M P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYMQ--PMHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVVLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFSGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFMASLANLALPPLPNLMGELMIITSMFSWSYWTLILTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + L+ RE ++ Sbjct: 411 LFLMTQRGPLPSHII-ALEPTHTREHLLI 438 >gi|300470636|dbj|BAJ11127.1| NADH dehydrogenase subunit-4 [Cobitis biwae] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVFLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTPTH-ITGLPPFHTREHLLM 438 >gi|37545835|gb|AAM95739.1| NADH dehydrogenase subunit 4 [Bos indicus] Length = 474 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I L+ L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLISLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPVHNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|2829042|gb|AAD10077.1| NADH ubiquinone oxidoreductase subunit 4 [Xenocypris argentea] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|317176575|dbj|BAJ54385.1| NADH dehydrogenase subunit 4 [Pantodon buchholzi] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L++LT +L P IL+S I+ R Y+ ++L+ +I AF + Sbjct: 54 NMYLATDPLSTPLLILTCWLLPLMILASQNHIRSEPLNRQRSYITLLILLQLFLIPAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLILHKNMG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + + ++ W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLQYSPVLDQPSWANNIW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS Sbjct: 233 AAVLLKLGGYGMMRIMVMLTPLTKELAYPFII-LALWGIIMTGTICLRQTDLKSMIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF Y+RLH+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERLHSRTLLMARGLQT 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + +AN+ LP +GE +I S+F S V+ FG +++A YSL++ Sbjct: 352 ILPLMASWWFIANLANLALPPLPNLMGELTIITSMFNWSAWTIVITGFGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|155368593|emb|CAM98607.1| NADH dehydrogenase subunit 4 [Procyon lotor] Length = 459 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/383 (33%), Positives = 205/383 (53%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P + +S K + Y+ + L+ +I F + ++++ Sbjct: 58 TDSLSAPLLVLTTWLLPLMLTASQFHLAKETLTRKKLYITMLITLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLLPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALL---WTQNDLGTL 174 Query: 196 D-LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L A + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 175 NFLIAQYWIQHTSSTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L P + + A LSL +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRITVLLNP-TTNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + GA M++HGL SSALF Y+R H+R + GL +P Sbjct: 294 MALVIAAVLIQTPWSYTGATVLMVAHGLTSSALFCLANSNYERTHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ +M N+ LP T IGE V+M+ F SN +L ++++ALY+L++ Sbjct: 354 LMAAWWLLASMTNLALPPTINLIGELFVVMASFSWSNMTIILMGTNIIITALYTLYMLIM 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G S + ++ +K RE Sbjct: 414 TQRGKS-TQHIKNIKPSFTRENA 435 >gi|215511544|gb|ACJ67988.1| NADH dehydrogenase subunit 4 [Fundulus heteroclitus] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 207/365 (56%), Gaps = 12/365 (3%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGA 128 ++ + ++ D +S L+VLT +L P I++S + EN + I+ L+ L+ +I A Sbjct: 51 FYINNYMAYDPLSSPLLVLTCWLLPLMIIASQNHLAAEPENRQRTYISLLISLQIFLILA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVV--- 184 F + +M++FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A+++ Sbjct: 111 FSATEMIMFYVMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVALLIYHS 170 Query: 185 -MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M S S ++ + W W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 171 SMGSLSYLSLTSLPLTCSNL-YADKLW-WMACLLAFLVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRIMIILDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R I Sbjct: 288 AYSSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTIILAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A + ++AN+ LP +GE ++I S+F S +L G +++A Y Sbjct: 348 GLQMVLPLMATWWFLASLANLALPPLPNLMGEIMIITSLFNWSFYTLILTGLGTLITASY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|62736203|ref|YP_227591.1| NADH dehydrogenase subunit 4 [Cervus nippon yesoensis] gi|62241303|dbj|BAD93679.1| NADH dehydrogenase subunit 4 [Cervus nippon yesoensis] Length = 459 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW++ +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLSCMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|330371464|gb|AEC12718.1| NADH dehydrogenase subunit 4 [Hypselobarbus micropogon] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L P++ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPMSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTATWWFLANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L+ RE ++ Sbjct: 413 LMSQRG-QVPNHITGLQPFHTREHLLM 438 >gi|162279942|ref|YP_001023772.2| NADH dehydrogenase subunit 4 [Phacochoerus africanus] Length = 459 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 132/380 (34%), Positives = 209/380 (55%), Gaps = 11/380 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLILTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + + + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLSAGLYFLFYTLAGSLPLLVALVYIQNTMGSLNFLI 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++ S P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IHYWSH-PLSNTWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L PL + Y A LS+ +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARGLQTFLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP + IGE L+IMS F SN +L ++++ALYSL++ Sbjct: 357 TWWLMASLTNLALPPSINLIGELLIIMSSFSWSNITIILMGANMMITALYSLYMLIMTQR 416 Query: 434 GVSKCEKVQQLKDLSLRERC 453 G + +K RE Sbjct: 417 G-KYSHHINNIKPSFTRENT 435 >gi|256427233|ref|YP_003127001.1| NADH dehydrogenase subunit 4 [Kuhlia mugil] gi|256353385|dbj|BAH97892.1| NADH dehydrogenase subunit 4 [Kuhlia mugil] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQVFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP V+I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLIPTLVLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNSAGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S P + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYTSPLPLTTYADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L ++ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R HTR + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHTRTLVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMATWWFIASLANLALPPLPNLMGELMIITSLFHWSYWTLLLTGAGTLITASYSLYMF 412 >gi|288903460|ref|YP_003434178.1| NADH dehydrogenase subunit 4 [Cervus nippon hortulorum] gi|285013426|gb|ADC32705.1| NADH dehydrogenase subunit 4 [Cervus nippon hortulorum] Length = 459 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMQRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|195934720|ref|YP_002120655.1| NADH dehydrogenase subunit 4 [Meles meles] gi|155368607|emb|CAM98620.1| NADH dehydrogenase subunit 4 [Meles meles] Length = 459 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 129/389 (33%), Positives = 209/389 (53%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 VD +S L++LTT+L P +++S + + + Y+ ++L+ +I F + ++++ Sbjct: 58 VDSLSAPLLMLTTWLLPLMLMASQHHLSKETLTRKKLYITMLIMLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLMPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALL---WAQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NL-------LVIQYWAQPLSNSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL + P + LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITMLLNPLTNLMAYPFMM-LSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIMAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+++ F SN +L + ++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVIASFSWSNITILLMGINITITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G ++ +K RE Sbjct: 407 SLYMLITTQRG-KYTHHIKNIKPSFTREN 434 >gi|108561809|ref|YP_626682.1| NADH dehydrogenase subunit 4 [Hynobius chinensis] gi|284794696|ref|YP_003412053.1| NADH dehydrogenase subunit 4 [Hynobius guabangshanensis] gi|51891132|gb|AAU12950.1| NADH dehydrogenase subunit 4 [Hynobius chinensis] gi|84371655|gb|ABC56095.1| NADH dehydrogenase subunit 4 [Hynobius chinensis] gi|284098151|gb|ADB78081.1| NADH dehydrogenase subunit 4 [Hynobius guabangshanensis] Length = 459 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 213/359 (59%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +LG+D +S L++LT +L P IL+S ++ N R Y+ ++L++ +I AF + + Sbjct: 55 YLGLDPLSSPLLILTCWLLPMMILASQNHLKNNPETQQRMYISMMIILQASLILAFAATE 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 115 IIMFYIAFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLILQNYSGSL 174 Query: 193 S--IIDLYA-MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S +++L + M +S + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 SFFLLELTSPMQLLLYSDKIW-WTACLLAFMVKMPLYGMHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL+ + P I L+L +I ++ M QTD+K LIAYSS++ Sbjct: 234 VLLKLGGYGILRVLIMLTPLSKELSYPFII-LALWGVIMTGMICMRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG + + G + M+SHGL+SSALF + Y+R H+R + G + Sbjct: 293 HMGLIIAAALIQTPWSLSGTIILMISHGLISSALFCLANMNYERTHSRTLLLMRGAQTML 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A ++ ++NM LP + GE +++S+F SN ++ G +++A Y+L+++ Sbjct: 353 PLMATWWLLTNLSNMALPPSLNLWGELTIMVSLFNWSNWTILITGLGTLITASYTLYMF 411 >gi|260766574|gb|ACX50314.1| NADH dehydrogenase subunit 4 [Catostomus latipinnis] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 135/360 (37%), Positives = 205/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMIVLQYSQPLILESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V G+ G GA+ M+SHGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGVLIQTPWGFTGAIILMISHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I S+F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFAANLANLALPPLPNLMGELMIITSLFSWSPWTIALTGAGTLITAGYSLYLF 412 >gi|126215359|ref|YP_001054837.1| NADH dehydrogenase subunit 4 [Neolamprologus brichardi] gi|126143560|dbj|BAF47298.1| NADH dehydrogenase subunit 4 [Neolamprologus brichardi] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 205/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAF 129 F S ++ D +S L+ LT +L P IL+S + E F R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLTLTCWLLPLMILASQNHTASEPFSRQRTYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNN 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L +M F F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYAPSMQLFSFADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMIMLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + +AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMTAWWFIAGLANLALPPLPNLMGELMIITSLFHWSWWTIALTGAGTLITASYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|124377103|emb|CAM32004.1| NADH dehydrogenase 4 [Theragra finnmarchica] Length = 461 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S VL G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAGTLVLTGIGTLITAAYSLYMF 412 >gi|88766370|gb|ABD49702.1| NADH dehydrogenase subunit 4 [Phacochoerus africanus] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 132/380 (34%), Positives = 209/380 (55%), Gaps = 11/380 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLILTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + + + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLSAGLYFLFYTLAGSLPLLVALVYIQNTMGSLNFLI 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++ S P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IHYWSH-PLSNTWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L PL + Y A LS+ +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARGLQTFLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP + IGE L+IMS F SN +L ++++ALYSL++ Sbjct: 357 TWWLMASLTNLALPPSINLIGELLIIMSSFSWSNITIILMGANMMITALYSLYMLIMTQR 416 Query: 434 GVSKCEKVQQLKDLSLRERC 453 G + +K RE Sbjct: 417 G-KYSHHINNIKPSFTRENT 435 >gi|16357033|ref|NP_443303.1| NADH dehydrogenase subunit 4 [Lampris guttatus] gi|16266918|dbj|BAB70101.1| NADH dehydrogenase subunit 4 [Lampris guttatus] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 208/372 (55%), Gaps = 17/372 (4%) Query: 69 HWIDYF-------CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIA 117 HW++ + + L +D +S L++LT +L P I++S ++ R ++ Sbjct: 40 HWLNLWSETGWNMTNLLLALDPLSSPLLILTCWLLPLMIIASQSHLKAEPINRQRSFLSL 99 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSI 176 +L++ +I AF + + +LFY+ FEA+LIP II WG +ER+ A F YT GS+ Sbjct: 100 LTLLQAFLIAAFGATETILFYLMFEATLIPTLFIITRWGNQTERLGAGTYFLFYTLAGSL 159 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 +L A++ + + S++ L M P + W W A +F +K+P++ H WLP Sbjct: 160 PLLVALLFLQNNTGSLSMLTLQYMEPLAPSPAAGGLW-WAACLLAFLVKMPLYGVHLWLP 218 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 AHV+AP AGS+ LA ++LK+GGYG +R ++ L PL+ + P I L+L ++ + V Sbjct: 219 KAHVEAPIAGSMILAAVLLKLGGYGMVRIMVVLAPLSKELSYPFII-LALWGVVMTASVC 277 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTD+K LIAYSS+ HMG V GI + G+ GA+ M++HGL SSALF Y+R Sbjct: 278 LRQTDLKSLIAYSSVGHMGLVASGILTQTYWGLTGAIILMVAHGLTSSALFCLANTNYER 337 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 HTR + GL +P A + ++AN+ LP +GE ++I S+F S Sbjct: 338 THTRTMLLARGLQMVLPLMAAWWFIMSLANLALPPLPNLMGELMIISSLFNWSPLTLATT 397 Query: 414 SFGVVLSALYSL 425 GV+++A YSL Sbjct: 398 GAGVLITAGYSL 409 >gi|62125773|gb|AAX63799.1| NADH dehydrogenase subunit 4 [Myxocyprinus asiaticus] gi|71610944|dbj|BAE16749.1| NADH dehydrogenase subunit-4 [Myxocyprinus asiaticus] gi|119225509|dbj|BAF41853.1| NADH dehydrogenase subunit 4 [Myxocyprinus asiaticus] Length = 460 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEMIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++Q W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLQSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILVQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFVANLANLALPPLPNLMGELMIITTMFNWSPWTITLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPAP-SHIMGLSPFHTREHLLM 438 >gi|255077753|gb|ACU00387.1| NADH dehydrogenase subunit 4 [Cryptobranchus alleganiensis] Length = 457 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 204/364 (56%), Gaps = 10/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 +G+D +S L++LT +L P I++S ++ N R YM ++L++ +I AF + + Sbjct: 56 MGLDQLSSPLMILTCWLFPLMIMASQNHLKNNPLNWQRTYMTMLIILQTSLIMAFSATEF 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++VM + S Sbjct: 116 MLFYISFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSMPLLIALLVMQNSLGSLS 175 Query: 194 IIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 I L M + Y W W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 FIILDLMPPMMLTFYYNKIW-WVACLLAFLVKMPLYGTHLWLPKAHVEAPIAGSMVLAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + PL+ + P I L+L + L+ QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGILRISMMSPPLSQELSYPFIT-LALWGTLMTGLICTRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GA+ M+SHGLVSS LF + Y+R H+R + G +P Sbjct: 294 MGLVIAAALIQTPWSYAGAITLMISHGLVSSVLFCLANLNYERTHSRTLLLMRGSQTILP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 ++ + NM +P ++ GE L+I S+F SN ++ V++A+Y+L++Y Sbjct: 354 LMMTWWLLGNLFNMAIPPSTNMWGELLIIASLFDWSNFTILITGICTVITAVYTLYIYMM 413 Query: 431 VVFG 434 G Sbjct: 414 TQHG 417 >gi|119360451|ref|YP_913363.1| NADH dehydrogenase subunit 4 [Aphyocypris chinensis] gi|119225047|dbj|BAF41424.1| NADH dehydrogenase subunit 4 [Aphyocypris chinensis] Length = 460 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P + L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELIYPFVI-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-SHIMKLPPFHTREHLLM 438 >gi|25006432|dbj|BAC23928.1| NADH dehydrogenase subunit 4 [Erpetoichthys calabaricus] Length = 460 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S+ + D IS L++LT +L P IL+S I R Y+ L+ ++I AF + Sbjct: 54 SFTMATDMISTPLIILTCWLLPLMILASQNHITTEPINRQRTYITLLTSLQLLLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 114 TEIILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLSLYKSTG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + S+I ++ + S W +W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 SLSMISMFMNNNI--SSDTWTNSLLWAACLMAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR L L P A++ A L+L II + M Q+D+K LIAYS Sbjct: 232 LAAVLLKLGGYGMIRMTLILEP-ATKSLAYPFIILALWGIIMTGSICMRQSDMKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R ++R + G+ Sbjct: 291 SVSHMGLVASGILIQTTWGFTGAIILMIAHGLTSSALFCLANTTYERTNSRTLLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + ++ NM LP +GE ++++S+F S+ +L G +++A YSL+ Sbjct: 351 IILPLMATWWFIMSLMNMALPPLPNLMGELIIMVSLFNWSSWTILLTGTGTLITATYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 LY G + + + ++ RE ++ Sbjct: 411 LYLSSQRGPAP-DNILLIEPTHTREHLLL 438 >gi|49616770|ref|YP_044735.1| NADH dehydrogenase subunit 4 [Shinisaurus crocodilurus] gi|49256982|dbj|BAD24785.1| NADH dehydrogenase subunit 4 [Shinisaurus crocodilurus] Length = 456 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 128/376 (34%), Positives = 199/376 (52%), Gaps = 15/376 (3%) Query: 71 IDYFCSY---HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLES 123 +D C++ +L +D IS L+ LT +L P ++S + R ++ +L++ Sbjct: 46 LDLECTHLTTNLSIDSISAPLLTLTCWLLPLMTIASQNHLHTEPMNRKRAFLSTLAILQT 105 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAI 182 +I F + D+++FY+ FEA+LIP +II WG +ER+ A F LYT S+ +L I Sbjct: 106 FLILTFTASDLMMFYVMFEATLIPTLIIITRWGAQAERLNAGTYFLLYTLTSSLPLLITI 165 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + K + ++ Y P + W +W+ +F +K+P++ H WLP AHV+ Sbjct: 166 LYL--NNKHALVLLQYLHFTQPALTESWTYYTLWLGCLMAFMVKMPLYGLHLWLPKAHVE 223 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP AGS+ LA I+LK+GGYG IR L L PL P + L+L II S + + QTD Sbjct: 224 APIAGSMVLAAILLKLGGYGIIRVSLTLNPLTHTLSYPFMA-LALWGIIMTSTICLRQTD 282 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS+ HMG V + + + G M M++HGL SS LF Y+R +R Sbjct: 283 LKSLIAYSSVGHMGLVIAAVLIQTQWSLSGTMMLMIAHGLTSSMLFCLANTNYERTQSRT 342 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GL +P + + NM P + +GE +I S+F S T +L G + Sbjct: 343 LLLARGLHLVLPMMTFWWLFANLTNMATPPSINLMGELFIISSLFNWSTTTIILTGAGTL 402 Query: 419 LSALYSLWLYRKVVFG 434 L+A YSL+++ G Sbjct: 403 LTATYSLYVFLSTQQG 418 >gi|327492649|ref|YP_004347544.1| NADH dehydrogenase subunit 4 [Lagocephalus lagocephalus] gi|327392570|dbj|BAK09999.1| NADH dehydrogenase subunit 4 [Lagocephalus lagocephalus] Length = 460 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 204/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L++L+ +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLILSCWLLPLMILASQSHTSQEPINRQRTYISLLTSLQFFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+L+P ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 MIMFYVMFEATLVPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLLQNTNGSL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + P + + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLAHSTPLPLTTYASKLW-WTACILAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L II S + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRILVTLEPLTKELGYPFIV-LALWGIIMTSSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGSTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQTAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S+ L G +++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELMILTSLFNWSSWTIALTGLGTLITASYSLYMF 412 >gi|213135965|gb|ACJ43527.1| NADH dehydrogenase subunit 4 [Calotriton asper] Length = 459 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 209/364 (57%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + ++ VD +S L+VLT +L P L+S ++ N R Y++ +L+S +I AF Sbjct: 51 FTNMYMLVDPVSSPLLVLTCWLLPLMTLASQNHLKTNPLSRQRTYLVMLALLQSSLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 111 SSTELIMFYIAFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQAS 170 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + S+ + M P Q + +W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 LGSLSLTLINTME--PMVTQSYTDKILWFACLLAFMVKMPLYGAHLWLPKAHVEAPVAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L PL + P + L+L ++ SL+ M QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGMIRITIILTPLTKEMSYPFMT-LALWGVVMTSLICMRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V I + GA+ M+SHGL+SS LF + Y+R H+R + G Sbjct: 288 YSSVSHMGLVIAAIMIQTPWSLTGAIILMISHGLISSTLFCLANLNYERTHSRTLLLMRG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P ++ ++NM LP T GE +++S+F S ++ G +++A Y+ Sbjct: 348 AQAILPLMTTWWLLANLSNMALPPTMNLWGELTIMVSLFNWSPLTILITGTGTLITASYT 407 Query: 425 LWLY 428 L+++ Sbjct: 408 LYMF 411 >gi|107991097|ref|YP_626604.1| NADH dehydrogenase subunit 4 [Liua tsinpaensis] gi|51891120|gb|AAU12944.1| NADH dehydrogenase subunit 4 [Liua tsinpaensis] gi|84371571|gb|ABC56017.1| NADH dehydrogenase subunit 4 [Liua tsinpaensis] Length = 458 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 129/372 (34%), Positives = 215/372 (57%), Gaps = 15/372 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIGAF 129 + +LG+D +S L++LT +L P IL+S S + R Y+ + L++ +I AF Sbjct: 51 LVNKYLGLDPLSSPLLILTCWLLPLMILASQNHLKNSPESRQRMYITMMITLQTSLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FYI FE++LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 111 AATEMIMFYITFESTLIPTLIIITRWGNQAERLNAGTYFLFYTLVGSLPLLVALLIL--- 167 Query: 189 KKTSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + S + L+ + P +S + W W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 168 QNFSGSLSLFLLEFNPMQLTMYSNKIW-WVACLLAFMVKMPLYGMHLWLPKAHVEAPIAG 226 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL + P I L+L +I L+ M QTD+K LI Sbjct: 227 SMILAAVLLKLGGYGILRISMMLTPLYKELSYPFII-LALWGVIMTGLICMRQTDLKSLI 285 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V + GA+ M+SHGL+SSALF + Y+R H+R + Sbjct: 286 AYSSVSHMGLVIAAALIQTPWSLSGAIILMISHGLISSALFCLANMNYERTHSRTLLLVR 345 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ +P + ++ ++NM LP + GE +++S+F S+ ++ G +++A Y Sbjct: 346 GMHTMLPLMSTWWLLVNLSNMALPPSLNLWGELTIMVSLFNWSSWTILITGIGTLITASY 405 Query: 424 SLWLYRKVVFGV 435 +L+++ G+ Sbjct: 406 TLYMFLMTQRGL 417 >gi|325087328|gb|EGC40638.1| NADH dehydrogenase subunit 4 [Ajellomyces capsulatus H88] Length = 311 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 183/309 (59%), Gaps = 3/309 (0%) Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237 ML +I+ M T+ D + + F + Q +++ F SFA+K P +TWL AHV Sbjct: 1 MLLSIITMSSIMGTTDF-DALSKANFNYITQLFLFYGIFISFAVKTPTIFLNTWLLKAHV 59 Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 ++P AGS+ LAGI+LK+ YG R +LPL P AS + +I+ + +I IIYAS ++ Sbjct: 60 ESPLAGSILLAGIVLKLSLYGIFRLILPLLPKASINYTYIIYVIGVITIIYASFSTLRTI 119 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV-GVIYDRLHT 356 DIK+LIAYSS++H +G FS G+EGA+ L+HG VSS LF CV GV+YDR T Sbjct: 120 DIKELIAYSSVSHAAVYLLGAFSNSIQGIEGAISLGLAHGFVSSGLFICVGGVLYDRSST 179 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R I Y GL MP ++++ + ++ N G P T FIGEF+ + F+ + +LAS Sbjct: 180 RLITYYRGLAQLMPIFSILFYILSLGNCGAPLTLNFIGEFMSLYGTFERVPFLGLLASSS 239 Query: 417 VVLSALYSLWLYRKVVFGVSKCEKVQQ-LKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 +V SA Y++++Y ++ FG + L DL+ RE ++ + + TV FG+YP PI D Sbjct: 240 IVFSAAYTIFMYNRIAFGGIFSSFFFKYLFDLNKREFVLLTCLVIFTVLFGVYPAPILDG 299 Query: 476 FSVPLSSII 484 +SS+I Sbjct: 300 LHYSVSSLI 308 >gi|119360535|ref|YP_913792.1| NADH dehydrogenase subunit 4 [Chanodichthys mongolicus] gi|119225551|dbj|BAF41892.1| NADH dehydrogenase subunit 4 [Culter mongolicus] Length = 460 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPVSRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-ITKLPPFHTREHLLM 438 >gi|114052894|ref|YP_740289.1| NADH dehydrogenase subunit 4 [Lacerta viridis viridis] gi|113926826|emb|CAJ45055.1| NADH dehydrogenase subunit 4 [Lacerta viridis viridis] Length = 460 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 201/368 (54%), Gaps = 10/368 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDML 135 D S L+VL+ +L P IL+S ++ R +++ L+ +I F + + + Sbjct: 58 STDATSSPLIVLSCWLLPLMILASQNHLKTEPLNRKRSFLMTISALQLTLILTFTASNFI 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 LFYI FE +LIP +II WG +ER+ A F YT S+ +L A++ + K + Sbjct: 118 LFYILFETTLIPTLIIITRWGNQAERLNAGLYFLFYTLTSSLPLLIAMLYLN-NKYAHTS 176 Query: 195 IDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++L+ +++ S W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 177 MELFFLNQPELASTSPNPMFWLASLLAFMVKLPLYGLHLWLPKAHVEAPIAGSMVLAAIL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR L L P S P I L+L I+ S + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGLIRILPMLNPHPSTLMFP-IMVLALWGILMTSSICLRQTDLKALIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V + G+ GAM M++HGL SSALF Y+R HTR + GL +P Sbjct: 296 GLVITAMMLQTPWGLTGAMTLMIAHGLSSSALFTLANTNYERTHTRTLLLVRGLQLALPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ + NM +P T +GE +I ++F S ++ G +++A+YSL+++ Sbjct: 356 MSTWWLLINLTNMAMPPTINLVGELTIITALFNWSYPTIIITGTGTLMTAIYSLYMFLMT 415 Query: 432 VFGVSKCE 439 G+ + Sbjct: 416 QRGIISTQ 423 >gi|223976116|ref|YP_002600879.1| NADH dehydrogenase subunit 4 [Antilope cervicapra] gi|223972285|dbj|BAH23324.1| NADH dehydrogenase subunit 4 [Antilope cervicapra] Length = 459 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLVLTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYWM------------WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW+ W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------LQYWVQPMSNSWSNVFTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRVTLLLNP-VTEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQMFLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|221145571|ref|YP_002519842.1| NADH dehydrogenase subunit 4 [Balistapus undulatus] gi|219806665|dbj|BAH10183.1| NADH dehydrogenase subunit 4 [Balistapus undulatus] Length = 460 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 134/361 (37%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 + +L DG+S L+VLT +L P IL+S + Q R Y+ L+ +I AF + Sbjct: 54 NLYLATDGLSTPLLVLTCWLLPLMILASQNHLTLEPQNRQRMYISLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEILMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNATG 173 Query: 191 TSSIIDL-YAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + S P ++ ++W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQHTASGHPEIWANKFW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLTILDPLTKELSYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A+ + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMAMWWFLASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGGGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|194277553|ref|YP_492616.2| NADH dehydrogenase subunit 4 [Hemibarbus mylodon] gi|190888452|gb|ABC56415.2| NADH dehydrogenase subunit 4 [Hemibarbus mylodon] Length = 460 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLIIQYSQPLLQDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ Q P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKQLVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-IMKLPPFHTREHLLM 438 >gi|56692550|ref|YP_163890.1| NADH dehydrogenase subunit 4 [Anguilla malgumora] gi|56565368|dbj|BAD78045.1| NADH dehydrogenase subunits 4 [Anguilla malgumora] Length = 460 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMRLEPTNRQRSYITLLISLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKDIG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPLILSSWGDKLWWAACLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTP-NHITGLEPSHTREHLLI 438 >gi|25057970|ref|NP_740201.1| NADH dehydrogenase subunit 4 [Sufflamen fraenatum] gi|25006232|dbj|BAC23835.1| NADH dehydrogenase subunit 4 [Sufflamen fraenatum] Length = 460 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 133/364 (36%), Positives = 207/364 (56%), Gaps = 16/364 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 +++L DG+S L+VLT +L P IL+S + R Y+ L+ +I AF + Sbjct: 54 NFYLATDGLSTPLLVLTCWLLPLMILASQNHLTPEPLSRQRMYISLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVLMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL---QN 170 Query: 191 TSSIIDLYAMSKFPF------SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T+ + L + F + ++W WI +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 TAGTLSLLTLQHTTFLCPDTWANKFW-WIGCMLAFLVKMPLYGAHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMMRMLTVLGPLTKELCYPFII-LALWGVIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVVGGILVQTSWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A + ++AN+ LP +GE +VI S+F S +L G +++A YS Sbjct: 349 LQVALPLMATWWFLASLANLALPPLPNLMGELMVITSLFNWSWWTLILTGGGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|317176561|dbj|BAJ54372.1| NADH dehydrogenase subunit 4 [Cromeria nilotica] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 208/389 (53%), Gaps = 11/389 (2%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFL 130 + ++ D +S L+VLT +L P +L+S ++ R Y+ + L+ +I AF Sbjct: 53 ANTYMATDPLSTPLLVLTCWLLPMMVLASQNHMRTEPLSRQRLYISLLISLQVFLIMAFS 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + + +FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ M E Sbjct: 113 ATEFFMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLSMQQET 172 Query: 190 KTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ L P + + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 GTLSMLTLQFADPLPLYSWGGKLW-WAGCMIAFLVKMPLYGAHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L P + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRVSIVLDPATKEMAYPFIA-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVVGGILIQTPWGFTGALALMIAHGLVSSALFCLANTSYERTHSRTLLLTRGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I+++F S +L G +++A YSL+ Sbjct: 351 TLFPLAAAWWFIMNLANLALPPLPNLMGELTIIIAMFNWSPWTILLTGAGTLITACYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLASQRGPTPTHII-NLPPTHTREHLLM 438 >gi|70987520|gb|AAZ16568.1| NADH dehydrogenase subunit 4 [Bos taurus] Length = 459 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I L+ L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLISLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPVHNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|16357132|ref|NP_443238.1| NADH dehydrogenase subunit 4 [Chlorophthalmus agassizi] gi|16266828|dbj|BAB70023.1| NADH dehydrogenase subunit 4 [Chlorophthalmus agassizi] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 202/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +LG D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLGTDPLSTPLLVLTCWLLPLMILASRNHISPEPLNRQRTYLSLLTSLQVFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYVMFEATLVPTLFIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNDTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTLQYSNPLNLSTWGDSLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R +L L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMLILDPLSKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGALVLMIAHGLASSALFCLANTNYERTHSRTMLLARGLQAV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P +AN+ LP +GE ++I S+F S+ +L G +++A YSL+++ Sbjct: 353 LPLMGTWWFFANLANLALPPLPNLMGELVIISSLFNWSSWTLILTGVGTLIAAGYSLYMF 412 >gi|57505804|ref|ZP_00371729.1| NADH-ubiquinone oxidoreductase, NQO13 subunit (NQO13) [Campylobacter upsaliensis RM3195] gi|57015834|gb|EAL52623.1| NADH-ubiquinone oxidoreductase, NQO13 subunit (NQO13) [Campylobacter upsaliensis RM3195] Length = 492 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 162/504 (32%), Positives = 267/504 (52%), Gaps = 32/504 (6%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L+I+ F P L F+ S +LG G F V + + +L ++ F +G S Sbjct: 2 LNILIFFPLLVAFL---SFFLGRGGIKIFSVVASLLILGL--NLQIFFDFLQGVS----F 52 Query: 66 EYYHWIDY--FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 E + + + F S+H+GV IS+ L++L + I S+ ++ R + A LE Sbjct: 53 ESHFSLGFAKFFSFHIGVSAISLSLMLLCSL----MIFLSFLFLKIENRAIVSAIFFLEF 108 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++G F + D LLFYIF+E SL+P+ I+GV+G + A KFF+Y F GSI ML AI Sbjct: 109 AMMGLFSAQDALLFYIFWEFSLLPLLYILGVYGKDFK--AGIKFFIYAFVGSILMLVAI- 165 Query: 184 VMCWEKKTSSIIDLYA---------MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + T ++ ++ +S P Q +++AFF +FAIK P+FP HTW P Sbjct: 166 -LYQASLTQQVLGIFTFDLEIWKNNVSVTPLLEQIVLFLAFFIAFAIKAPLFPLHTWAPK 224 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 + +P SV L + KM +G ++F LPLFP AS Y P + L +I+++Y ++++ Sbjct: 225 VYANSPILVSVML--VAFKMAPFGFLQFCLPLFPDASVYLMPFVLVLCVISVVYCAMIAF 282 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 D+K+LIAYSSI+H+G + GIF+ G+ GA+F M +HGLV+ LF ++ + Sbjct: 283 KTRDLKELIAYSSISHIGIMVAGIFTFSTLGISGAVFYMFAHGLVTGTLFLLAHLLVKKY 342 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T ++ L P +A+ + +A++ LP T F+GEFLV++++ + + +A+ A Sbjct: 343 GTSELNKLHSLSLKTPGFAIFFALVLLASVSLPLTISFVGEFLVLLALAKINIFLALFAG 402 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 V+L +Y L ++RK+ F + K +++ L +RE + P+ L + GI P + Sbjct: 403 LVVILGVIYMLAVFRKIFF-MQKEDEIASF-GLKMREILALIPVVALIFYLGIAPNILLK 460 Query: 475 TFSVPLSSIIENYTLKTGYSDSVK 498 S+ E L+ SV Sbjct: 461 PLQDEAKSLQEMMHLRALEQKSVN 484 >gi|157778617|gb|ABV70760.1| NADH dehydrogenase subunit 4 [Bos taurus] Length = 459 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I L+ L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLISLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPVHNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|119360320|ref|YP_913779.1| NADH dehydrogenase subunit 4 [Xenocypris argentea] gi|119225537|dbj|BAF41879.1| NADH dehydrogenase subunit 4 [Xenocypris argentea] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYSQPLLLSSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L RE ++ Sbjct: 411 MFLMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|317134186|ref|YP_004123438.1| NADH dehydrogenase subunit 4 [Pseudopungtungia tenuicorpus] gi|223951252|gb|ACN29547.1| NADH dehydrogenase subunit 4 [Pseudopungtungia tenuicorpus] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 143/430 (33%), Positives = 226/430 (52%), Gaps = 21/430 (4%) Query: 42 TINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFC-------SYHLGVDGISILLVVLTTF 94 TI I S ++W+ S +I W+ + + +L D +S L+VLT + Sbjct: 14 TIWLISSKWLWTATITHSLSIALISLT-WLKWTSETGWAESNAYLATDPLSTPLLVLTCW 72 Query: 95 LTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 L P IL+S I R Y+ L++ +I AF + ++++FYI FEA+LIP + Sbjct: 73 LLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGATEIIMFYIMFEATLIPTLI 132 Query: 151 IIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 II WG +ER+ A F YT GS+ +L A++++ ++ T ++ L P + Sbjct: 133 IITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTGTLSMLVIQYSQPLMLNS 190 Query: 210 W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 W W +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R ++ Sbjct: 191 WGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMMIM 250 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 L PL+ + P I L+L II + + QTD+K LIAYSS++HMG V GI G Sbjct: 251 LDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWG 309 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 GA+ M++HGLVSS LF Y+R H+R + GL P A+ + +AN+ Sbjct: 310 FSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMIFPLTAIWWFIANLANLA 369 Query: 386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLK 445 LP +GE ++I ++F S L G +++A YSL+++ G + + +L Sbjct: 370 LPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMFLMSQRGPTPSH-IMKLP 428 Query: 446 DLSLRERCMV 455 RE ++ Sbjct: 429 PFHTREHLLM 438 >gi|300470641|dbj|BAJ11131.1| NADH dehydrogenase subunit-4 [Cobitis biwae] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L++LT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLILTCWLLPLMILASQNHINPEPINRQRLYITLLVFLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTPTH-ITGLPPFHTREHLLM 438 >gi|300470631|dbj|BAJ11123.1| NADH dehydrogenase subunit-4 [Cobitis biwae] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVSLQTFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLHSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S ++ G +++A YSL+ Sbjct: 351 MIFPLTAAWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILITGIGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTP-PHITGLPPFHTREHLLL 438 >gi|221145459|ref|YP_002519673.1| NADH dehydrogenase subunit 4 [Melichthys vidua] gi|219806861|dbj|BAH10235.1| NADH dehydrogenase subunit 4 [Melichthys vidua] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 210/361 (58%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 + +L DG+S L+VLT +L P IL+S + Q R Y+ L+ +I AF + Sbjct: 54 NLYLATDGLSTPLLVLTCWLLPLMILASQNHLILEPQNRQRMYISLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEILMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTAG 173 Query: 191 TSSIIDL-YAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + ++ P ++ ++W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQHTITTCPNTWASKFW-WTGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLTILDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A+ + ++AN+ LP +GE +++ S+F S L G++++A YSL++ Sbjct: 352 ALPLMAMWWFLASLANLALPPLPNLMGELMIVTSLFNWSWWTLTLTGGGMLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|119360619|ref|YP_913402.1| NADH dehydrogenase subunit 4 [Zacco sieboldii] gi|119225089|dbj|BAF41463.1| NADH dehydrogenase subunit 4 [Zacco sieboldii] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + Sbjct: 54 NMYLAADPLSTPLLVLTCWLLPLMILASQNHVNPEPIARQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGMGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L RE ++ Sbjct: 411 MFLISQRGPTP-SHITKLPPFHTREHLLM 438 >gi|166066477|gb|ABY80741.1| NADH dehydrogenase subunit 4 [Pseudopungtungia nigra] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-IMKLPPFHTREHLLM 438 >gi|280978457|ref|YP_003345381.1| NADH dehydrogenase subunit 4 [Paraconger notialis] gi|271280611|dbj|BAI53402.1| NADH dehydrogenase subunit 4 [Paraconger notialis] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 134/388 (34%), Positives = 216/388 (55%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S + R Y+ + L+ ++ AF + Sbjct: 54 NLYLATDPLSAPLLVLSCWLLPLMILASQNHLSAEPVSRQRSYITLLISLQMLLTLAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLTLQKDLG 173 Query: 191 TSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + YA M + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTIQYAPQMDLPSWGDKIW-WTGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K +IAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIILTPLTKELAYPFII-LALWGVIMTGSICLRQTDLKSMIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLTRGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + +AN+ LP +GE ++I S+F SN +L G +++A YSL++ Sbjct: 352 ILPLMAAWWFISNLANLALPPLPNLMGELMIITSMFNWSNWSILLTGLGTLITAGYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L+ RE ++ Sbjct: 412 FLMTQRGPTP-NHILGLEPSHTREHLLI 438 >gi|166240025|ref|NP_758802.2| NADH dehydrogenase subunit 4 [Theragra chalcogramma] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S VL G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLVLTGIGTLITAAYSLYMF 412 >gi|37496471|emb|CAD22008.1| NADH dehydrogenase subunit 4 [Tapirus terrestris] Length = 459 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 199/355 (56%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DPLSAPLLVLTTWLLPLMLMASQHHLSKEPLTRKKLYITMLVLLQMFLIMTFTATELISF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALITT--QNFTGSLNL 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + Y P S ++W A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LLTQYWTQPLPNSWSSMFLWTACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL S Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITTILNPLTS-YMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMTSFSWSNITIILTGTNIIITALYSLYM 410 >gi|322422713|ref|YP_004222425.1| NADH dehydrogenase subunit 4 [Micromesistius poutassou] gi|317423516|emb|CBY85664.1| NADH dehydrogenase 4 [Micromesistius poutassou] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSTEPLNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNNTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMIYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|255077739|gb|ACU00374.1| NADH dehydrogenase subunit 4 [Proteus anguinus] Length = 456 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 208/377 (55%), Gaps = 7/377 (1%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLL 136 VD IS L+VLT +L P IL+S K I+ N R Y++ + L+ +I AF + +++L Sbjct: 58 VDQISSPLLVLTCWLLPLMILASQKHIKTNPATRQRTYILMLVFLQMALIIAFSASELML 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FE +LIP VII WG ER+ A + F YT GS +L A+++M + SI+ Sbjct: 118 FYIAFETTLIPTLVIITRWGNQMERLNAGHYFLFYTLAGSFPLLAALLLMNASTGSLSIL 177 Query: 196 DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 + + I +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+G Sbjct: 178 LMEMGATTLSPIDELLWLACLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAILLKLG 237 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 GYG IR L + P I L+L + L+ M QTD+K LIAYSS++HMG V Sbjct: 238 GYGIIRVSFLLISSMKEMSYPFII-LALWGAVMTGLICMRQTDLKALIAYSSVSHMGLVV 296 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 G+ GA M+SHGL SSALF + Y+R H+R + G +P AV Sbjct: 297 AATLIQTPWGLMGATLLMISHGLTSSALFCLANLNYERTHSRTLIMMRGAQAVLPILAVW 356 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 ++ ++NM LP T+ GE +++S+F S ++ ++++A+Y+L + + G Sbjct: 357 WLLANLSNMALPPTTNLWGELTIMVSLFNWSKWTIMMTGAIMLITAMYTLHMLQTTQRGP 416 Query: 436 SKCEKVQQLKDLSLRER 452 + Q L + RE Sbjct: 417 TPLHLKQALPPHT-REH 432 >gi|6648661|gb|AAF21282.1| NADH ubiquinone oxidoreductase subunit 4 [Parabramis pekinensis] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASRNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPMLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-ITKLPPFHTREHLLM 438 >gi|45826207|gb|AAS77726.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/392 (34%), Positives = 209/392 (53%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITVLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLANLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|209166222|gb|ACI41593.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|209166250|gb|ACI41619.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|209166264|gb|ACI41632.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 134/391 (34%), Positives = 207/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A +V ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLVASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINNIKPSFTRENALM 437 >gi|84579681|dbj|BAE72260.1| NADH dehydrogenase subunit 4 [Oryzias latipes] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/357 (37%), Positives = 204/357 (57%), Gaps = 14/357 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + + N + I+ LV L+ +I AF + +M Sbjct: 57 IATDPLSTPLLVLTCWLLPLMILASQNHMAKEPINRQRTYISLLVSLQIFLILAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL--QSSTGS 174 Query: 194 IIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + L P + ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSFLTTQFFPPLQLHTEASKFW-WAGCLLAFLVKMPLYGTHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P +FT+AN+ LP +GE ++I S+F SN +L G +++A YSL Sbjct: 353 LPLLTTWWFLFTLANLALPPLPSLMGELMIITSLFNWSNWTLLLTGAGTLITASYSL 409 >gi|37719402|gb|AAR01789.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 134/391 (34%), Positives = 207/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A +V ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLVASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINNIKPSFTRENALM 437 >gi|332886758|dbj|BAK22883.1| NADH dehydrogenase subunit 4 [Raiamas guttatus] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 141/399 (35%), Positives = 219/399 (54%), Gaps = 17/399 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 S + G D +S L+VLT +L P IL+S I N + IA L L++ +I AF + Sbjct: 54 SAYFGTDPLSTPLLVLTCWLLPLMILASQNHINPEPVNRQRLYIALLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L +++++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQNERLNAGVYFLFYTLAGSLPLLVSLLLLQQSTG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ L ++ P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMLVL--LNSEPMLVNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ Q P + L+L II L+ + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRIMVVLDPLSKQLIYPFLV-LALWGIIMTGLMCLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFSGAIILMVAHGLASSALFCLANTSYERTHSRTMILARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ +P +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFMANLANLAMPPLPNLMGELMIITALFNWSPWTIALTGAGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVL 461 ++ G + + L RE ++ P+A+L Sbjct: 411 MFLTSQRGQTPNHAI-NLSPFHSREHLLITLHLAPMALL 448 >gi|124486579|ref|YP_001031194.1| NADH dehydrogenase subunit 4 [Theragra finnmarchica] gi|26453408|dbj|BAC43778.1| NADH dehydrogenase subunit 4 [Theragra chalcogramma] gi|49658420|dbj|BAD27133.1| NADH dehydrogenase subunit 4 [Theragra chalcogramma] gi|49658434|dbj|BAD27146.1| NADH dehydrogenase subunit 4 [Theragra chalcogramma] gi|49658448|dbj|BAD27159.1| NADH dehydrogenase subunit 4 [Theragra chalcogramma] gi|49658462|dbj|BAD27172.1| NADH dehydrogenase subunit 4 [Theragra chalcogramma] gi|49658476|dbj|BAD27185.1| NADH dehydrogenase subunit 4 [Theragra chalcogramma] gi|49658490|dbj|BAD27198.1| NADH dehydrogenase subunit 4 [Theragra chalcogramma] gi|49658504|dbj|BAD27211.1| NADH dehydrogenase subunit 4 [Theragra chalcogramma] gi|49658518|dbj|BAD27224.1| NADH dehydrogenase subunit 4 [Theragra chalcogramma] gi|94481786|gb|ABF21492.1| NADH dehydrogenase subunit 4 [Theragra chalcogramma] gi|124377089|emb|CAM31991.1| NADH dehydrogenase 4 [Theragra finnmarchica] Length = 461 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S VL G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLVLTGIGTLITAAYSLYMF 412 >gi|60101834|ref|YP_209214.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|237869052|ref|YP_002907383.1| NADH dehydrogenase subunit 4 [Bos javanicus] gi|128741|sp|P03910|NU4M_BOVIN RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|27543915|dbj|BAC54744.1| NADH-ubiquinone oxidoreductase chain 4 [Bos taurus] gi|27543929|dbj|BAC54757.1| NADH-ubiquinone oxidoreductase chain 4 [Bos taurus] gi|27543943|dbj|BAC54770.1| NADH-ubiquinone oxidoreductase chain 4 [Bos taurus] gi|27543957|dbj|BAC54783.1| NADH-ubiquinone oxidoreductase chain 4 [Bos taurus] gi|27543971|dbj|BAC54796.1| NADH-ubiquinone oxidoreductase chain 4 [Bos taurus] gi|27543985|dbj|BAC54809.1| NADH-ubiquinone oxidoreductase chain 4 [Bos taurus] gi|27543999|dbj|BAC54822.1| NADH-ubiquinone oxidoreductase chain 4 [Bos taurus] gi|33321671|gb|AAQ06602.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|42521322|gb|AAS18251.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56410904|gb|AAV88119.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56410918|gb|AAV88132.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56410932|gb|AAV88145.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56410946|gb|AAV88158.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56410960|gb|AAV88171.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56410974|gb|AAV88184.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56410988|gb|AAV88197.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56411002|gb|AAV88210.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56411016|gb|AAV88223.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56411030|gb|AAV88236.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56411044|gb|AAV88249.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56411058|gb|AAV88262.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56411072|gb|AAV88275.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56411086|gb|AAV88288.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56411100|gb|AAV88301.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56411114|gb|AAV88314.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56411128|gb|AAV88327.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56411142|gb|AAV88340.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|56411156|gb|AAV88353.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987478|gb|AAZ16529.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987492|gb|AAZ16542.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987506|gb|AAZ16555.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987534|gb|AAZ16581.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987548|gb|AAZ16594.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987562|gb|AAZ16607.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987576|gb|AAZ16620.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987590|gb|AAZ16633.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987604|gb|AAZ16646.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987618|gb|AAZ16659.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987632|gb|AAZ16672.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987646|gb|AAZ16685.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987660|gb|AAZ16698.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987674|gb|AAZ16711.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987688|gb|AAZ16724.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987702|gb|AAZ16737.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987716|gb|AAZ16750.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987744|gb|AAZ16776.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987758|gb|AAZ16789.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987772|gb|AAZ16802.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987786|gb|AAZ16815.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987800|gb|AAZ16828.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987814|gb|AAZ16841.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987828|gb|AAZ16854.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987842|gb|AAZ16867.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987856|gb|AAZ16880.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987870|gb|AAZ16893.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987884|gb|AAZ16906.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987898|gb|AAZ16919.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987912|gb|AAZ16932.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987940|gb|AAZ16958.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987968|gb|AAZ16984.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987982|gb|AAZ16997.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70987996|gb|AAZ17010.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70988010|gb|AAZ17023.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70988024|gb|AAZ17036.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70988038|gb|AAZ17049.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70988052|gb|AAZ17062.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70988066|gb|AAZ17075.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70988080|gb|AAZ17088.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70988094|gb|AAZ17101.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70988108|gb|AAZ17114.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70988122|gb|AAZ17127.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|70988136|gb|AAZ17140.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778029|gb|ABV70214.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778043|gb|ABV70227.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778057|gb|ABV70240.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778071|gb|ABV70253.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778085|gb|ABV70266.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778099|gb|ABV70279.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778113|gb|ABV70292.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778127|gb|ABV70305.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778141|gb|ABV70318.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778155|gb|ABV70331.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778169|gb|ABV70344.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778183|gb|ABV70357.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778211|gb|ABV70383.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778225|gb|ABV70396.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778239|gb|ABV70409.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778253|gb|ABV70422.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778267|gb|ABV70435.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778281|gb|ABV70448.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778295|gb|ABV70461.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778309|gb|ABV70474.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778323|gb|ABV70487.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778337|gb|ABV70500.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778351|gb|ABV70513.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778365|gb|ABV70526.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778379|gb|ABV70539.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778393|gb|ABV70552.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778407|gb|ABV70565.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778421|gb|ABV70578.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778435|gb|ABV70591.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778449|gb|ABV70604.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778463|gb|ABV70617.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778477|gb|ABV70630.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778491|gb|ABV70643.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778505|gb|ABV70656.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778519|gb|ABV70669.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778533|gb|ABV70682.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778547|gb|ABV70695.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778561|gb|ABV70708.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778575|gb|ABV70721.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778589|gb|ABV70734.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778603|gb|ABV70747.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778631|gb|ABV70773.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778645|gb|ABV70786.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778659|gb|ABV70799.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778673|gb|ABV70812.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778687|gb|ABV70825.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778701|gb|ABV70838.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778715|gb|ABV70851.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778729|gb|ABV70864.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778743|gb|ABV70877.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778757|gb|ABV70890.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|229501224|gb|ACQ73758.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|229501238|gb|ACQ73771.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|233142554|gb|ACQ91131.1| NADH dehydrogenase subunit 4 [Bos javanicus] gi|237780771|gb|ACR19416.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|237780785|gb|ACR19429.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294679601|gb|ADF29606.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294959826|gb|ADF49336.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294959840|gb|ADF49349.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294959854|gb|ADF49362.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294959868|gb|ADF49375.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294959882|gb|ADF49388.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294959896|gb|ADF49401.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294959910|gb|ADF49414.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294959924|gb|ADF49427.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294959938|gb|ADF49440.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294959952|gb|ADF49453.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294959966|gb|ADF49466.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294959980|gb|ADF49479.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294959994|gb|ADF49492.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294960008|gb|ADF49505.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|294960022|gb|ADF49518.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977277|gb|ADN11784.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977291|gb|ADN11797.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977305|gb|ADN11810.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977319|gb|ADN11823.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977361|gb|ADN11862.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977375|gb|ADN11875.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977389|gb|ADN11888.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977403|gb|ADN11901.1| NADH dehydrogenase subunit 4 [Bos taurus] Length = 459 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I L+ L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLISLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPVHNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|326535975|ref|YP_004300416.1| NADH dehydrogenase subunit 4 [Galaxias gollumoides] gi|311788405|gb|ADQ12794.1| NADH dehydrogenase subunit 4 [Galaxias gollumoides] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 204/363 (56%), Gaps = 12/363 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFL 130 + ++ D +S L++L+ +L P IL+S N + +++ L L+ +I AF Sbjct: 53 ANLYIATDPLSTPLLILSCWLLPLMILASQNHTSSEPVNRQRTLVSLLTSLQVFLILAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 113 ATEVIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QS 170 Query: 190 KTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 DTGSLSMLTLQYNSPLELSTWADKLWWAACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R +L L PL + P + L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMLILDPLTKELAYPFVV-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + +AN+ LP +GE ++I S+F SN L G +++A YSL Sbjct: 350 QMVLPLMATWWFIANLANLALPPLPNLMGELVIITSLFNWSNWTIALTGVGTLITAAYSL 409 Query: 426 WLY 428 +L+ Sbjct: 410 YLF 412 >gi|310788936|gb|ADP24471.1| NADH dehydrogenase subunit 4 [Oxygymnocypris stewartii] Length = 460 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSAPLLVLSCWLLPLMILASQNHINPEPINRQRSYIMLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFY+ FE +LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IILFYVMFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLMLQYSQPMQLNSWGHMVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L ++ + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVILDPLSKELAYPFII-LALWGVVMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 GHMGLVAGGILIQTPWGFTGAIILMVAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLAAVWWFIANLANLALPPLPNLMGEIMIITTLFGWSPWTILLTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE +V Sbjct: 413 LMSQRGPTP-NHIVGLQPFHTREHLLV 438 >gi|70987730|gb|AAZ16763.1| NADH dehydrogenase subunit 4 [Bos taurus] Length = 459 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I L+ L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLISLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPVHNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATTLMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|116090848|ref|YP_778769.2| NADH dehydrogenase subunit 4 [Monachus schauinslandi] Length = 446 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/382 (33%), Positives = 207/382 (54%), Gaps = 9/382 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSTPLLALTTWLLPLMLMASQFHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGMYFLFYTLVGSLPLLVALLSIQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++ L+A +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 178 MLQLWAQPTLNSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + L PL S P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITMLLNPLTSSTAYPFMM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 297 VIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQGLLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP T IGE V+M+ F SN +L ++++A+YSL++ Sbjct: 357 TWWLMASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITAMYSLYMLITTQR 416 Query: 434 GVSKCEKVQQLKDLSLRERCMV 455 G ++ +K RE ++ Sbjct: 417 G-KYTHHIKNIKPSFTRENALM 437 >gi|330371459|gb|AEC12714.1| NADH dehydrogenase subunit 4 [Hypselobarbus periyarensis] Length = 460 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTATWWFLANLANLALPPLPNLMGELTIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L+ RE ++ Sbjct: 413 LMSQRG-QVPNHITGLQPFHTREHLLM 438 >gi|223976088|ref|YP_002600786.1| NADH dehydrogenase subunit 4 [Sus scrofa domesticus] gi|223972369|dbj|BAH23402.1| NADH dehydrogenase subunit 4 [Sus scrofa domestica] Length = 459 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 134/391 (34%), Positives = 207/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A +V ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLVASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINNIKPSFTRENALM 437 >gi|197311209|ref|YP_002154526.1| NADH dehydrogenase subunit 4 [Menidia menidia] gi|197304270|dbj|BAG69229.1| NADH dehydrogenase subunit 4 [Menidia menidia] Length = 460 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 205/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S +L D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYLATDPLSTPLLVLTCWLLPLMILASQNHTSSEPLGRQRTYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L A+ ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 AGTLSLLTLPYSPAIHLSTYADKLW-WAACLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG IR ++ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMIRMMVMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE +++ S+F S VL G +++A YSL Sbjct: 350 QMVLPLMTAWWFIASLANLALPPLPNLMGELMILSSLFNWSPWTLVLTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|239997617|gb|ACS37127.1| NADH dehydrogenase subunit 4 [Microcaecilia sp. PZ-2009] Length = 458 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 132/388 (34%), Positives = 211/388 (54%), Gaps = 8/388 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAF 129 F + + D +S L++LT +LTP I++S + N R Y+ F+ L+ +I AF Sbjct: 51 FSNKWMATDQLSTPLMILTCWLTPLMIIASRNHMSNNQPNQQRTYISMFIALQLSLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +++ FYI FE +LIP +II WG ER+ A F YT GS+ +L A++++ Sbjct: 111 SSTELIQFYIMFETTLIPTLIIITRWGNQVERLNAGTYFLFYTLMGSLPLLIALLILHNN 170 Query: 189 KKTSSIIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S++++ +++ + Y W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 171 MGSLSMMNMQFLNQITTTNTNYIWWVACLIAFLVKMPLYGTHLWLPKAHVEAPIAGSMIL 230 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L P + P I LSL II S + + QTD+K LIAYSS Sbjct: 231 AAVLLKLGGYGIMRVSMMLTPFTMETTYPFII-LSLWGIIMTSTICLRQTDLKSLIAYSS 289 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V + + GA M++HGL SS LF Y+R H R + GL Sbjct: 290 VSHMALVIMATMIQTPWTMSGATTLMIAHGLTSSMLFCLANTNYERTHNRTMLLARGLQT 349 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A+ +V + NM LP + +GE +I ++F S +L GV+++A+YSL + Sbjct: 350 ILPLMAMWWLVANLTNMALPPSINLMGELTIISAMFNWSTLTIILTGSGVIITAIYSLHM 409 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L RE ++ Sbjct: 410 FLTTQRG-PTTKHMNHLLPSYTREHLLM 436 >gi|190349310|ref|YP_001974510.1| NADH dehydrogenase subunit 4 [Oncorhynchus gorbuscha] gi|134268938|gb|ABO68962.1| NADH dehydrogenase subunit 4 [Oncorhynchus gorbuscha] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 203/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRTYISLLVSLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDNG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYTQ--PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFIASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|82492338|gb|ABB78073.1| NADH dehydrogenase subunit 4 [Oncorhynchus mykiss] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 203/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRAYISLLVSLQTFLVLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDNG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYTQ--PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P V ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|229501252|gb|ACQ73784.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|229501266|gb|ACQ73797.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977333|gb|ADN11836.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977347|gb|ADN11849.1| NADH dehydrogenase subunit 4 [Bos taurus] Length = 459 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I L+ L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLISLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPVHNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|11055681|gb|AAG28225.1|AF304203_10 NADH4 [Sus scrofa] gi|3702657|emb|CAA05237.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320735|gb|AAQ06028.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320847|gb|AAQ06132.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|157056435|gb|ABV02137.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|209166110|gb|ACI41489.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|209166124|gb|ACI41502.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|209166138|gb|ACI41515.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|209166152|gb|ACI41528.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|209166166|gb|ACI41541.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|209166180|gb|ACI41554.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|209166194|gb|ACI41567.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|209166208|gb|ACI41580.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|209166236|gb|ACI41606.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|209166278|gb|ACI41645.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 134/391 (34%), Positives = 207/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A +V ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLVASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINNIKPSFTRENALM 437 >gi|322422588|ref|YP_004222159.1| NADH dehydrogenase subunit 4 [Petrocephalus soudanensis] gi|317176435|dbj|BAJ54255.1| NADH dehydrogenase subunit 4 [Petrocephalus soudanensis] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHITPEPINRQRTYITLLISLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG SER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQSERLNAGTYFLFYTLAGSLPLLVALLILQKDLGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S++ + S P W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTMQYYS--PTKTTTWGDNIWWAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGILTQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRALLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTLTLTGLGTLITAAYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTPAHTI-TLQPSHTREHLLM 438 >gi|119360493|ref|YP_913649.1| NADH dehydrogenase subunit 4 [Gyrinocheilus aymonieri] gi|119225355|dbj|BAF41710.1| NADH dehydrogenase subunit 4 [Gyrinocheilus aymonieri] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILPYSQPLTLISWGHKIWWAGCVIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGEIMIITTLFNWSPWTIALTGVGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMTQRGPAP-NHILGLPPFHTREHLLM 438 >gi|44843571|emb|CAE48125.1| NADH deydrogenase subunit 4 [Erpetoichthys calabaricus] gi|296099538|gb|ADG95149.1| NADH dehydrogenase subunit 4 [Erpetoichthys calabaricus] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S+ + D IS L++LT +L P IL+S I R Y+ L+ ++I AF + Sbjct: 54 SFTMATDMISTPLIILTCWLLPLMILASQNHITTEPINRQRTYITLLTSLQLLLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 114 TEIILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLSLYKSTG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + S+I ++ + S W +W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 SLSMISMFMNNSI--SSDTWTNSLLWAACLMAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR L L P A++ A L+L II + M Q+D+K LIAYS Sbjct: 232 LAAVLLKLGGYGMIRMTLILEP-ATKSLAYPFIILALWGIIMTGSICMRQSDMKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R ++R + G+ Sbjct: 291 SVSHMGLVASGILIQTTWGFTGAIILMIAHGLTSSALFCLANTTYERTNSRTLLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + ++ NM LP +GE ++++S+F S+ +L G +++A YSL+ Sbjct: 351 IILPLMATWWFIMSLMNMALPPLPNLMGELIIMVSLFNWSSWTILLTGTGTLITATYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 LY G + + + ++ RE ++ Sbjct: 411 LYLSSQRGPAP-DNILLIEPTHTREHLLL 438 >gi|310788938|gb|ADP24472.1| NADH dehydrogenase subunit 4 [Platypharodon extremus] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSAPLLVLSCWLLPLMILASQNHINPEPINRQRSYIMLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IILFYIMFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMFMLQYSQPMQLNSWGHMVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVILDPLSKELAYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 GHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV V +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLAAVWWFVANLANLALPPLPNLMGEIMIITTLFGWSPWTILLTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE +V Sbjct: 413 LMSQRGPTP-NHIVGLQPFHTREHLLV 438 >gi|198447339|ref|YP_002221350.1| NADH dehydrogenase subunit 4 [Rhodeus ocellatus] gi|63081761|gb|AAY30628.1| NADH dehydrogenase subunit 4 [Rhodeus ocellatus] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 215/388 (55%), Gaps = 15/388 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 HL D +S L++LT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 HLATDPLSTPLLILTCWLLPLMILASQYHINSEPLNRQRLYISLLASLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL---QQTI 172 Query: 193 SIIDLYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + ++ + P + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 GTLSMFIIQYSQPLMLNSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILVQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P AV + +AN+ LP +GE ++I ++F S +L G++++A YSL+L Sbjct: 352 IFPLTAVWWFIANLANLALPPLPNLMGELMIISTLFNWSPMTILLTGLGMLITAAYSLYL 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + +L RE ++ Sbjct: 412 FLMSQRGPTP-NHIIKLAPFHTREHLLM 438 >gi|2829069|gb|AAD10095.1| NADH ubiquinone oxidoreductase subunit 4 [Xenocypris yunnanensis] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 SSYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYSQPLLLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GG G +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGCGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + ++N+GLP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLSNLGLPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L RE ++ Sbjct: 411 MFLMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|5835473|ref|NP_008402.1|ND4_13475 NADH dehydrogenase subunit 4 [Balanoglossus carnosus] gi|3065683|gb|AAD11946.1| NADH dehydrogenase subunit 4 [Balanoglossus carnosus] Length = 462 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 133/357 (37%), Positives = 197/357 (55%), Gaps = 9/357 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDML 135 D +S L+VL+ +L P +L+SW+ +Q+ R Y L ++I F +LD+L Sbjct: 58 ATDSLSTPLIVLSIWLLPLSLLASWRHLQQEPFPRQRIYAALLCSLTLILIVTFSALDLL 117 Query: 136 LFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 LFYI FEA+LIP ++I WG ER+ A F YT FGS+ +L A+ + + SI Sbjct: 118 LFYIAFEATLIPTLIVITRWGYQPERLQAGTYFLFYTLFGSLPLLIALFSIYTSTASVSI 177 Query: 195 -IDLYAMSKFPFSIQ-YWMW-IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + FSI +W +A +F K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 178 PLTILSSDLAQFSINSLTLWCVASIIAFLAKLPIYGTHLWLPKAHVEAPIAGSMILAAIL 237 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +RF +F + I + + + SL+ + QTD+K LIAYSS+ HM Sbjct: 238 LKLGGYGLVRFS-EIFSYPTNASTTPIMIICIWGALATSLICVRQTDMKALIAYSSVGHM 296 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V G FS G+ G++ M++HGLVSSALF + Y+R HTR + GL MP Sbjct: 297 SLVAAGTFSQTTWGIHGSLILMIAHGLVSSALFCLANLSYERTHTRTLALNRGLKLLMPL 356 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 ++ AN+GLP GE +I ++ S + V+ SA+YSL+L+ Sbjct: 357 STTWWLLTAAANLGLPPLPNLFGELFIINTLISWSPLTLLTTGLMVIFSAVYSLYLF 413 >gi|310788856|gb|ADP24431.1| NADH dehydrogenase subunit 4 [Hampala macrolepidota] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L++LT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLILTCWLLPLMILASQNHINPEPINRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +L+FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 ILMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNSLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLHLNSWGHTFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S + G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILFTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + +L+ RE ++ Sbjct: 413 LMSQRGPVP-NHITKLQPYHTREHLLM 438 >gi|49658532|dbj|BAD27237.1| NADH dehydrogenase subunit 4 [Theragra chalcogramma] Length = 461 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S VL G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLVLTGVGTLITAAYSLYMF 412 >gi|38640816|gb|AAR26017.1| NADH dehydrogenase subunit 4 [Sebastes schlegelii] Length = 477 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 133/358 (37%), Positives = 203/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQGHTALEPINRQRTYISLLTSLQVFLIMAFGATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + + S Sbjct: 117 LMFYVMFEATLIPTLIIITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLLLQKDTGSLS 176 Query: 194 IIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ + S P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTIQYASSTPLSSYADKLW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR ++ L PL + P I L+L ++ + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMVMLGPLTKELSYPFII-LALWGVVMTGSTCLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G+ GA+ M++HGL SSALF Y+RLH+R + GL +P Sbjct: 295 MGLVVGGILIQTPWGLAGAVILMIAHGLTSSALFCLANTNYERLHSRTMLLARGLQMVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE L+I S+F S VL G +++A YSL+++ Sbjct: 355 LMATWWFIASLANLALPPLPNLMGELLIITSLFGWSWWTLVLTGAGTLITASYSLYMF 412 >gi|5835311|ref|NP_007351.1|ND4_11617 NADH dehydrogenase subunit 4 [Arbacia lixula] gi|1480395|emb|CAA56615.1| NADH dehydrogenase subunit 4 [Arbacia lixula] Length = 461 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 128/343 (37%), Positives = 202/343 (58%), Gaps = 15/343 (4%) Query: 69 HWID--YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLE 122 HWI + S L VD I + L+VL+ +LTP +++S + N R +++ +++ Sbjct: 45 HWISKWHNLSLILSVDSIELPLLVLSCWLTPLALIASKGHLNNLPITNQRTFIVLVIIIT 104 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFA 181 + +I F SL+++LFYI FE +L+P ++I WG ER A F YT FGS+ +L + Sbjct: 105 TSLIITFSSLELILFYIAFETTLVPTLILITRWGAQMERFQAGLYFIFYTLFGSLPLLIS 164 Query: 182 IVVMCWEKKTSSIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + + + SI ++ + + S+ W W+ +F +K+P++ FH WLP AHV+ Sbjct: 165 LIALYFSSNSLSIPNVELVWLTTNSSTSLTVW-WLLSILAFLVKMPIYGFHLWLPKAHVE 223 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA--PVIFFLSLIAIIYASLVSMVQ 296 AP AGS+ LA I+LK+GGYG +R L+ LF S F+ P++ F A++ S++ + Q Sbjct: 224 APVAGSMILAAILLKLGGYGLMR-LISLFSTTSLNFSSLPLVVFCCWGALV-TSIICIRQ 281 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K LIAYSS+ HM V G+FS G+ GA+ M++HGLVSSALF +Y+R T Sbjct: 282 TDLKALIAYSSVGHMSIVAAGVFSQTIWGINGALMLMIAHGLVSSALFSLANTVYERSGT 341 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 R + GL +P + ++ AN+GLP T IGE L++ Sbjct: 342 RTLAITRGLKLILPLSTLWWLIMCAANLGLPPTPNLIGEILIL 384 >gi|327492719|ref|YP_004347609.1| NADH dehydrogenase subunit 4 [Auriglobus modestus] gi|327392346|dbj|BAK09791.1| NADH dehydrogenase subunit 4 [Auriglobus modestus] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 214/387 (55%), Gaps = 11/387 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ + L+ +I AF Sbjct: 52 FLNSYLATDPLSTPLLILSCWLLPLMILASQNHTAHEPIYRQRMYITLLISLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + + +FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 AATETTMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + F ++ + W W + +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLTLPYTTIFLPPTYANKIW-WTSCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L ++ + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILMALEPLTKELSYPFII-LALWGVVMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI + G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILTQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP F+GE ++I+S+F + +L GV+++A YSL Sbjct: 350 QTALPLMMTWWFIASLANLALPPLPNFMGELIIIISLFSWTWWTIILTGLGVLITASYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRER 452 +++ G + L+ RE Sbjct: 410 YMFLTTQRG-QLPSHIMTLEPSHTREH 435 >gi|292486457|ref|YP_003541093.1| NADH dehydrogenase subunit 4 [Bos primigenius] gi|229501280|gb|ACQ73810.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|229501294|gb|ACQ73823.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|229501308|gb|ACQ73836.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|229501322|gb|ACQ73849.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|291463832|gb|ADE05536.1| NADH dehydrogenase subunit 4 [Bos primigenius] gi|306977417|gb|ADN11914.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977431|gb|ADN11927.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977445|gb|ADN11940.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977459|gb|ADN11953.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977473|gb|ADN11966.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|306977487|gb|ADN11979.1| NADH dehydrogenase subunit 4 [Bos taurus] Length = 459 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I L+ L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLISLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPVHNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|207559906|gb|ACI24506.1| NADH dehydrogenase subunit 4 [Damaliscus pygargus] Length = 459 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 206/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S+ L++LT +L P +++S + +EN ++ I+ L+L + +I F + +++ F Sbjct: 59 DSLSMPLLILTMWLLPLMLMASQHHLSKENLTRKKLFISMLILLQLFLIMTFTAAELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI--QNTVGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------LQYWVQPVANSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLLLNPV-TDFMAYPFILLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS+F SNT +L +V++ALYS Sbjct: 348 LHTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMSIFSWSNTTIILVGINMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|239735198|dbj|BAH70417.1| NADH dehydrogenase subunit 4 [Anolis cybotes] Length = 459 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 200/359 (55%), Gaps = 8/359 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + L VD IS L+VL+ +L P +L+S +Q+ + ++I VL++++I F Sbjct: 51 FANKMLMVDQISSPLLVLSCWLLPLMVLASQNHLQQEPMHRKKTFLIILSVLQTLLILTF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+L+P +II WG +ER+ A F YT S+ +L AI+ + + Sbjct: 111 STTNLMMFYVVFEATLVPTLIIITRWGNQAERLTAGTYFLFYTLASSLPLLIAILTINFN 170 Query: 189 KKTSSIIDLYAMS-KFPFSI-QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 SS+ + + + S+ ++W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 NSHSSMFVMQIIQPQLNTSVSNNFLWAACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG IR L P+ + P L+L +I S + + QTD+K LIAYS Sbjct: 231 LAAILLKLGGYGIIRITTLLSPITPNLYYP-FMILALWGVIMTSAICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V + GA+ M++HGL SS LF Y+R H+R + L Sbjct: 290 SVSHMGLVITACLIQTPWAITGAITLMIAHGLTSSMLFCLANTNYERTHSRTLVLARSLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P ++ + NM LP + +GE L+I S+ S +L G +L+A+YSL Sbjct: 350 LILPLMTTWWLLANLTNMALPPSINLMGELLIISSLLNWSTFTILLTGVGTLLTAIYSL 408 >gi|194303913|gb|ACF41437.1| NADH dehydrogenase subunit 4 [Gadus morhua] Length = 461 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNNTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|108767320|ref|YP_636170.1| NADH dehydrogenase subunit 4 [Campostoma anomalum] gi|105873537|gb|ABF74770.1| NADH dehydrogenase subunit 4 [Campostoma anomalum] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 136/388 (35%), Positives = 213/388 (54%), Gaps = 15/388 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++++ Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQAERLSAGTYFLFYTLAGSLPLLVALLML---QQSA 172 Query: 193 SIIDLYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + L+ M P + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 GTLSLFIMQYAQPLLLDTWGHKIWWAGCLVAFLVKLPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R ++ L PL+ + P I L+L I+ + + QTD+K LIAYSS Sbjct: 233 AAILLKLGGYGMMRMMIMLDPLSKELIYPFII-LALWGIVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFSGAIILMVAHGLVSSMLFCLANTAYERTHSRTMVLARGLQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL++ Sbjct: 352 IFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + V +L RE ++ Sbjct: 412 FLMTQRGPTPNHLV-KLPPFHTREHLLM 438 >gi|255506406|ref|YP_003097160.1| NADH dehydrogenase subunit 4 [Budorcas taxicolor] gi|197107934|gb|ACH42511.1| NADH dehydrogenase subunit 4 [Budorcas taxicolor] Length = 459 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 206/355 (58%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QEN--FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN +++ I+ L+L + +I F + +++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENPARKKFFISMLILLQLFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI--QNTMGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPMPSSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIAYSSI+HM Sbjct: 237 KLGGYGMLRITLLLNPI-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSISHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALY+L++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYTLYM 410 >gi|57544861|ref|YP_052706.2| NADH dehydrogenase subunit 4 [Bos indicus] gi|75069822|sp|Q576B5|NU4M_BOSIN RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|33321657|gb|AAQ06589.1| NADH dehydrogenase subunit 4 [Bos indicus] gi|70987926|gb|AAZ16945.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778771|gb|ABV70903.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778785|gb|ABV70916.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|157778799|gb|ABV70929.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|229501336|gb|ACQ73862.1| NADH dehydrogenase subunit 4 [Bos taurus] gi|270486456|gb|ACZ83020.1| NADH dehydrogenase subunit 4 [Bos indicus] Length = 459 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I L+ L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLISLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPVHNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|119360633|ref|YP_913350.1| NADH dehydrogenase subunit 4 [Gnathopogon elongatus] gi|119225033|dbj|BAF41411.1| NADH dehydrogenase subunit 4 [Gnathopogon elongatus] Length = 460 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPITRQRMYISLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGIMIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|5836040|ref|NP_008799.1|ND4_15103 NADH dehydrogenase subunit 4 [Hippopotamus amphibius] gi|6647642|sp|Q9ZZY2|NU4M_HIPAM RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|4127873|emb|CAA09437.1| NADH4 [Hippopotamus amphibius] Length = 459 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 131/370 (35%), Positives = 201/370 (54%), Gaps = 28/370 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + ++ + L++ +I F +++++LF Sbjct: 59 DPLSTPLLILTMWLLPLMLMASQSHLLKEPPTRKKLFITMLITLQTFLIMTFSAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALIYI--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LM--------LQYWTQAVSNSWSNVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL P I LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTILNPLTEMMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T +GE LVIMS F SN +L ++++ LYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLVGELLVIMSSFSWSNITIILMGTNIMITTLYS 407 Query: 425 LWLYRKVVFG 434 L++ G Sbjct: 408 LYMLTTTQRG 417 >gi|5835174|ref|NP_008234.1|ND4_10553 NADH dehydrogenase subunit 4 [Pongo pygmaeus] gi|85700371|sp|P03908|NU4M_PONPY RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|6045118|dbj|BAA85291.1| NADH dehydrogenase subunit 4 [Pongo pygmaeus] Length = 459 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 132/401 (32%), Positives = 215/401 (53%), Gaps = 29/401 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLSTPLLMLTTWLLPLMIMASQHHLSNEPPSRKKLYLSMLISLQISLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIV----------VMC 186 YI FE +LIP +II WG ER+ A F YT GS+ +L A+ +M Sbjct: 119 YILFETTLIPTLIIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALTHTHNTLGSLNIML 178 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + D ++ S MW+A+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 179 LTLTARELTDSWSNSL--------MWLAYTMAFMMKMPLYGVHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L PL +++ A LSL +I S + + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRLTIILDPL-TKHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V I GA M++HGL SS LF Y+R H+R + GL Sbjct: 290 SVSHMALVVAAILIQTPWSFTGATTLMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A+ ++ ++ N+ LP T +GE V+M++F SN +L ++++ALYSL+ Sbjct: 350 TLLPLMALWWLLASLTNLALPPTINLLGELSVLMAMFSWSNITILLTGLNMLITALYSLY 409 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 ++ G + + +K S RE + ++PI +L++ Sbjct: 410 MFITTQRG-TPSHHINNMKPSSTRENTLMLMHLFPILLLSL 449 >gi|298916841|dbj|BAJ09720.1| NADH dehydrogenase subunit-4 [Oncorhynchus keta] Length = 460 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 203/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRTYISLLVSLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDNG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYTQ--PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFIASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|223972327|dbj|BAH23363.1| NADH dehydrogenase subunit 4 [Hippopotamus amphibius] Length = 459 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 131/370 (35%), Positives = 202/370 (54%), Gaps = 28/370 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + ++ + L++ +I F +++++LF Sbjct: 59 DPLSTPLLILTMWLLPLMLMASQSHLLKEPPTRKKLFITMLVTLQTFLIMTFSAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALIYI--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LM--------LQYWTQAVSNSWSNVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL P I LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTILNPLTEMMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + +GE LVIMS F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPSINLVGELLVIMSSFSWSNITIILMGTNIMITALYS 407 Query: 425 LWLYRKVVFG 434 L++ G Sbjct: 408 LYMLTTTQRG 417 >gi|118196918|emb|CAL37017.1| NADH dehydrogenase subunit 4 [Typhlops mirus] Length = 455 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 206/375 (54%), Gaps = 22/375 (5%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 + +L +D IS L+VL+ +L P +++S S+ R ++++ + L + ++ F Sbjct: 51 LANNYLDIDQISAPLLVLSYWLLPLMVMASQSSLSNEPIMRQRIFLMSLMTLHTFIVITF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++ YI FEA+LIP V+I WG +ER+ A F LYT F S+ +L AI+ + Sbjct: 111 TASSLMYLYIAFEATLIPTMVLITRWGHQAERLTAGTYFMLYTLFSSMPLLIAILFI--- 167 Query: 189 KKTSSIIDLYAMSKFPFS---------IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 +K I L+ FP + + MW A +F +K+PM+ FH WLP AHV+A Sbjct: 168 EKNMMIPSLF----FPTTGMFMPTNTTLNIIMWTACLMAFLVKMPMYGFHLWLPKAHVEA 223 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGS+ LA I+LKMGGYG IR L P+ + +F P+I +SL ++ ++ M QTD+ Sbjct: 224 PIAGSMVLAAILLKMGGYGMIRIFQALPPMNTNFFMPLII-ISLWGVLMTNMTCMQQTDL 282 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K LIAYSS+ HM V I G++GAM M++HG SS LF + Y+R H+R + Sbjct: 283 KSLIAYSSVGHMALVISAILIQTPWGIKGAMLLMIAHGFTSSLLFCLTNISYERTHSRLL 342 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 G+ P ++ + N+ LP F GE +++ ++F S + + G+++ Sbjct: 343 TLTKGMYIYFPLMTTWWLLANLMNIALPPLMNFTGEIMIMSTLFNWSTPTIIHMATGMII 402 Query: 420 SALYSLWLYRKVVFG 434 +A+YSL + FG Sbjct: 403 TAMYSLHMLISTQFG 417 >gi|56692480|ref|YP_163851.1| NADH dehydrogenase subunit 4 [Anguilla australis schmidti] gi|56565326|dbj|BAD78006.1| NADH dehydrogenase subunits 4 [Anguilla australis schmidti] Length = 460 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 134/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +LG D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + Sbjct: 54 NTYLGTDPLSTPLLVLSCWLLPLMILASQNHMRLEPINRQRSYITLLISLQMFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLTIQYTKPLILSSWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 MILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTP-NHIIGLEPSHTREHLLI 438 >gi|322506176|gb|ADX01631.1| NADH dehydrogenase subunit 4 [Ctenopharyngodon idella] Length = 460 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLASLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMTQRGPTPIH-ITKLPPFHTREHLLM 438 >gi|107991069|ref|YP_626565.1| NADH dehydrogenase subunit 4 [Liua shihi] gi|51891112|gb|AAU12940.1| NADH dehydrogenase subunit 4 [Liua shihi] gi|84371529|gb|ABC55978.1| NADH dehydrogenase subunit 4 [Liua shihi] Length = 458 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 214/367 (58%), Gaps = 9/367 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSW---KSIQENF-REYMIAFLVLESMVIGAFLS 131 + +LG+D +S L++LT +L P IL+S K+ EN R Y+ + L++ +I AF + Sbjct: 53 NKYLGLDPLSSPLLILTCWLLPMMILASQNHLKNTPENRQRMYITMMIALQTSLILAFAA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM--CWE 188 +M++FYI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 113 TEMIMFYITFESTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLQNSSG 172 Query: 189 KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + +++ M +S + W W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 173 SLSLFLLEFNPMQLMMYSDKIW-WVACLLAFMVKMPLYGMHLWLPKAHVEAPIAGSMILA 231 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL+ + P I L+L +I ++ M QTD+K LIAYSS+ Sbjct: 232 AVLLKLGGYGILRISIMLTPLSKELSYPFII-LALWGVIMTGMICMRQTDLKSLIAYSSV 290 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 291 SHMGLVIAAALIQTPWSLSGAIILMISHGLISSALFCLANMNYERTHSRTLLLMRGAHMM 350 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A ++ ++NM LP + GE +++S+F S+ ++ G +++A Y+L+++ Sbjct: 351 LPLMATWWLLINLSNMALPPSLNLWGELTIMVSLFNWSSWTILITGIGTLITASYTLYMF 410 Query: 429 RKVVFGV 435 G+ Sbjct: 411 LMTQRGL 417 >gi|124377061|emb|CAM31965.1| NADH dehydrogenase 4 [Gadus morhua] gi|194303661|gb|ACF41203.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303675|gb|ACF41216.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303689|gb|ACF41229.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303703|gb|ACF41242.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303717|gb|ACF41255.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303731|gb|ACF41268.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303745|gb|ACF41281.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303773|gb|ACF41307.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303787|gb|ACF41320.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303801|gb|ACF41333.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303815|gb|ACF41346.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303829|gb|ACF41359.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303843|gb|ACF41372.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303857|gb|ACF41385.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303871|gb|ACF41398.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303885|gb|ACF41411.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303899|gb|ACF41424.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303927|gb|ACF41450.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303941|gb|ACF41463.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303955|gb|ACF41476.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303969|gb|ACF41489.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303983|gb|ACF41502.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194303997|gb|ACF41515.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194304011|gb|ACF41528.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194304039|gb|ACF41554.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194304053|gb|ACF41567.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194304067|gb|ACF41580.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194304081|gb|ACF41593.1| NADH dehydrogenase subunit 4 [Gadus morhua] gi|194304095|gb|ACF41606.1| NADH dehydrogenase subunit 4 [Gadus morhua] Length = 461 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNNTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|84579639|dbj|BAE72221.1| NADH dehydrogenase subunit 4 [Oryzias latipes] Length = 460 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 135/385 (35%), Positives = 211/385 (54%), Gaps = 17/385 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + + R Y+ + L+ +I AF + +M Sbjct: 57 IATDPLSTPLLVLTCWLLPLMILASQNHMAKEPINRQRAYISLLISLQIFLILAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + ++ Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLSAGIYFLFYTLAGSLPLLVALLLL---QNSTG 173 Query: 194 IIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + L FP + ++W W +F + +P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLTTPFFPPLLLHTEASKFW-WAGCLLAFLVTMPLYGAHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A +FT+AN+ LP +GE ++I S+F SN +L G +++A YSL + Sbjct: 352 VLPLLATWWFLFTLANLALPPLPNLMGEIMIITSLFNWSNWTLLLTGAGTLITASYSLHM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRER 452 + G V ++ RE Sbjct: 412 FLTTQRG-PITNPVLAIEPTHTREH 435 >gi|108793262|ref|YP_636915.1| NADH dehydrogenase subunit 4 [Lophiomus setigerus] gi|25005631|dbj|BAC23290.1| NADH dehydrogenase subunit 4 [Lophiomus setigerus] Length = 460 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 202/361 (55%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+I L+ + AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLAILASQAHMASEPMTRQRTYIILLTSLQIFLTMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + T Sbjct: 116 IIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLWL--QNNTG 173 Query: 193 SIIDLYAMSKFPFSIQ-----YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLTLQFSDPLELKNITHKMW-WAGCILAFLVKMPLYGMHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R LL L PL + P I L+L +I V + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRILLLLQPLTKEMCYPFIV-LALWGVIMTGCVCLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 +AHMG V GI G GA+ M++HGL SSALF Y+RLH+R + GL Sbjct: 292 VAHMGLVIAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERLHSRTLMLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I ++F S +L G ++SA+YSL++ Sbjct: 352 ALPLMTGWWFIASLANLALPPLINLMGELMIITALFNWSPWTLILTGVGTLISAIYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|280978219|ref|YP_003345160.1| NADH dehydrogenase subunit 4 [Anarchias sp. Ansp] gi|271280200|dbj|BAI53181.1| NADH dehydrogenase subunit 4 [Anarchias sp. Ansp] Length = 460 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 133/404 (32%), Positives = 221/404 (54%), Gaps = 17/404 (4%) Query: 65 IEYYHW---IDYFCS-YHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMI 116 + ++ W + + CS + G D +S L+VL+ +L P L+S + + R ++ Sbjct: 39 LTWFKWESEVGWTCSGLYTGTDPLSTPLLVLSCWLLPLMTLASQNHMAPEPESRQRSFIT 98 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGS 175 + L++ +I AF + ++++FY+ FEA+LIP +II WG +ER+ A F YT GS Sbjct: 99 LLVSLQAFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGS 158 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTW 231 + +L A++++ +K ++ L P + W W +F +K+P++ H W Sbjct: 159 LPLLVALLIL--QKDLGTLSMLIMQHTDPLNTASWGAKLWWAGCLLAFLVKMPLYGAHLW 216 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP AHV+AP AG++ LA ++LK+GGYG +R + L PL + P I L+L II Sbjct: 217 LPKAHVEAPIAGTMVLAAVLLKLGGYGMMRIMTILTPLTKELAYPFII-LALWGIIMTGS 275 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 + + QTD+K +IAYSS++HMG V GI G GA+ M++HGLVSSALF Y Sbjct: 276 ICLRQTDLKSMIAYSSVSHMGLVAAGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNY 335 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R H+R + G+ +P A + ++AN+ LP +GE ++I+SVF S + Sbjct: 336 ERTHSRTLLLARGMQLVLPLAATWWFIASLANLALPPLPNLMGELMIIVSVFNWSYFTII 395 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L G +++A YSL+++ G + + L+ RE ++ Sbjct: 396 LTGLGTLITAGYSLYMFLMTQRGPTPXHMI-GLEPTHTREHILI 438 >gi|317108119|dbj|BAJ53877.1| NADH dehydrogenase subunit 4 [Leptoderma sp. LERE] Length = 461 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 142/399 (35%), Positives = 215/399 (53%), Gaps = 17/399 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLAADPLSTPLLVLTCWLLPLMILASQNHISHEPVNRQRMYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +L+FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 ILMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNNTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P S+ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTLQYSQPLSLSSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S + G +++A YSL+L+ Sbjct: 353 FPLTAVWWFTANLANLALPPLPNLMGEIMIIATMFNWSPWTLAITGLGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + V L RE + + PI +LT Sbjct: 413 LMSQRGPTPAHMV-GLTPYHTREHLLMTLHLVPIILLTT 450 >gi|332887038|dbj|BAK23143.1| NADH dehydrogenase subunit 4 [Luciosoma setigerum] Length = 460 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 135/388 (34%), Positives = 207/388 (53%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NTYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLTSLQAFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQQSTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L P S W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLMLPHTQLTPLSSWGNTMW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR ++ L P++ P I L+L I L+ + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRIMVVLEPMSKHLIYPFII-LALWGITMTGLICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VGHMGLVAGGILIQTPWGFSGAIILMIAHGLTSSALFCLANTSYERTHSRTMMLVRGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P AV + +AN+ +P +GE ++I ++F S L G +++A YSL++ Sbjct: 352 IFPLTAVWWFIANLANLAMPPLPSLMGELMIITALFNWSPWTIALTGLGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + + G L RE ++ Sbjct: 412 FLTLQRGPVP-NHTTNLPPFHTREHLLI 438 >gi|300507600|dbj|BAJ11214.1| NADH dehydrogenase subunit-4 [Cobitis striata] gi|300507605|dbj|BAJ11218.1| NADH dehydrogenase subunit-4 [Cobitis striata] Length = 460 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 214/388 (55%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQSHINPEPINRQRLYITLLVSLQAFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQHSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S+ L ++ F + +W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMFILQYSQPLTLFSWGHMFW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF +Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTVYERTHSRTMILARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+L Sbjct: 352 IFPLAAAWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGIGTLITAGYSLYL 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L RE ++ Sbjct: 412 FLMSQRGPTP-PHITGLPPFHTREHLLL 438 >gi|226453380|ref|YP_002791103.1| NADH dehydrogenase subunit 4 [Gadus ogac] gi|94481705|gb|ABF21417.1| NADH dehydrogenase subunit 4 [Gadus ogac] gi|94481719|gb|ABF21430.1| NADH dehydrogenase subunit 4 [Gadus ogac] Length = 461 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|94481646|gb|ABF21363.1| NADH dehydrogenase subunit 4 [Arctogadus glacialis] gi|94481660|gb|ABF21376.1| NADH dehydrogenase subunit 4 [Boreogadus saida] gi|194304025|gb|ACF41541.1| NADH dehydrogenase subunit 4 [Gadus morhua] Length = 461 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|288903538|ref|YP_003434292.1| NADH dehydrogenase subunit 4 [Cervus elaphus yarkandensis] gi|285013454|gb|ADC32731.1| NADH dehydrogenase subunit 4 [Cervus elaphus yarkandensis] Length = 459 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V++S F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVVSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|161867872|ref|YP_001600214.1| NADH dehydrogenase subunit 4 [Boreogadus saida] gi|161724993|emb|CAP46967.1| NADH dehydrogenase 4 [Boreogadus saida] Length = 460 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|53686400|ref|YP_097267.1| NADH dehydrogenase subunit 4 [Hydromantes brunus] gi|51980061|gb|AAU20717.1| NADH dehydrogenase subunit 4 [Hydromantes brunus] Length = 457 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 137/392 (34%), Positives = 214/392 (54%), Gaps = 21/392 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLS 131 + ++G+D IS L+VLT +L P IL+S ++ N R Y+ +L+ +I AF S Sbjct: 53 NKYMGLDFISSPLLVLTCWLFPLMILASQNHLKNNSIHKQRLYIFMLTILQMALILAFSS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++ LFYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++ + Sbjct: 113 TELTLFYIAFETTLIPTLIVITRWGNQTERLNAGMYFLFYTLAGSLPLLIALMFLYTSTG 172 Query: 191 TSSIIDLYAMSKF----PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + S+ L+ F P SI +W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 SLSLNLLFYSKMFLMTNPNSI---LWFGCLTAFMVKMPLYGAHLWLPKAHVEAPVAGSMI 229 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR L PL + +I L+L ++ L+ M QTD+K LIAYS Sbjct: 230 LAAVLLKLGGYGIIRITLIFTPLIKLSYPFII--LALWGVLMTGLICMRQTDLKSLIAYS 287 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 SI+HMG V GAM M+SHGL+SSALF Y+R+H+R + GL Sbjct: 288 SISHMGLVVAATLIQTPWSFTGAMILMISHGLISSALFCLANTNYERMHSRTMLLTRGLQ 347 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A ++ + NM LP T GE ++++S++ S ++ G +++A Y+L Sbjct: 348 VALPLMATWWLLLNLFNMALPPTPNLWGEIMIMVSLYNWSPWSILITGLGTLITAAYTLH 407 Query: 427 LYRKVVFGVSKCEKVQQLKDLS---LRERCMV 455 ++ + + + LK + RE C++ Sbjct: 408 MF----IITQRGQLPKHLKYTTPTFTREHCLM 435 >gi|2829063|gb|AAD10091.1| NADH ubiquinone oxidoreductase subunit 4 [Plagiognathops microlepis] Length = 460 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLHSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPFAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|5835285|ref|NP_008312.1|ND4_10917 NADH dehydrogenase subunit 4 [Crossostoma lacustre] gi|464241|sp|P34194|NU4M_CROLA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|336713|gb|AAB96820.1| NADH dehydrogenase subunit 4 [Crossostoma lacustre] Length = 460 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+ LT +L P +L+S I R Y+ L++ +I AF + Sbjct: 54 SLYLASDPLSTPLLGLTCWLLPLMVLASQNHITPEPIIRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQQTNG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSLLIL--QHSQPLALTSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVVLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPLTIILTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + + L RE ++ Sbjct: 411 LFLMSQRGPTP-KHIVGLPPFHTREHLLM 438 >gi|323649841|ref|YP_004222399.2| NADH dehydrogenase subunit 4 [Leptoderma sp. LERE] Length = 460 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 142/399 (35%), Positives = 215/399 (53%), Gaps = 17/399 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLAADPLSTPLLVLTCWLLPLMILASQNHISHEPVNRQRMYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +L+FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 ILMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNNTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P S+ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTLQYSQPLSLSSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S + G +++A YSL+L+ Sbjct: 353 FPLTAVWWFTANLANLALPPLPNLMGEIMIIATMFNWSPWTLAITGLGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + V L RE + + PI +LT Sbjct: 413 LMSQRGPTPAHMV-GLTPYHTREHLLMTLHLVPIILLTT 450 >gi|92918421|gb|ABE96694.1| NADH dehydrogenase subunit 4 [Lepidochelys olivacea] Length = 460 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 208/369 (56%), Gaps = 10/369 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAF 129 F + ++G+D IS L++L+ +LTP IL+S + R + + ++L+ ++ AF Sbjct: 52 FSNNYMGMDQISAPLLILSCWLTPMMILASQNHLALEPSSRKRTFTLTIILLQISLMLAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 ++++++F+I FE +LIP VII WG ER+ A F YT GS+ +L A++ + E Sbjct: 112 STMELIMFFITFETTLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLIALLSLYTE 171 Query: 189 KKTSSIIDLYAMSK-FPFSIQY--WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 +SS+ + P S Y W W A +F IK+P++ H W P AHV+AP AGS+ Sbjct: 172 NGSSSMYTMQLNQPIMPSSWTYTTW-WFALLMAFMIKMPLYGLHLWWPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG IR + L PL+ P + L+L +I S + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMV-LALWGVIMTSSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG + + + GA+ M++HGL SS LF Y+R H+R + + Sbjct: 290 SSVSHMGLIIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P ++ ++ ++ NM LP T +GE +I S+F SN ++ G +++A Y+L Sbjct: 350 QLLLPLMSLWWLLASLTNMALPPTINLMGELTIITSLFNWSNITILMTGLGTLITATYTL 409 Query: 426 WLYRKVVFG 434 ++ +G Sbjct: 410 YMLSTTQWG 418 >gi|76262559|gb|ABA41445.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 210/392 (53%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A + F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGFYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTHWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A+ ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAMWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|164420889|ref|YP_001648392.1| NADH dehydrogenase subunit 4 [Ramphotyphlops braminus] gi|84371473|gb|ABC55926.1| NADH dehydrogenase subunit 4 [Ramphotyphlops braminus] Length = 454 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 142/415 (34%), Positives = 215/415 (51%), Gaps = 25/415 (6%) Query: 41 STINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCI 100 +TI+FI +L S Q ++ F L VD IS L+ L+ +L P I Sbjct: 28 TTISFILALL----------SLQWLKQPTGPKLFSYPLLDVDHISAPLLTLSYWLLPLTI 77 Query: 101 LSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG 156 ++S S+ + R ++ A L ++ + F S + L YI FEA+LIP ++I WG Sbjct: 78 MASQSSLSKEPISRQRLFLTAVTTLHALTMLTFSSSSLTLMYIAFEATLIPTMILITRWG 137 Query: 157 -GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----M 211 +ER+ A F +YT S+ +L +I+ + T L+ F+ +W + Sbjct: 138 HQAERLTAGSYFMMYTLLSSMPLLISILFI---DHTLLAPTLFFFPTQNFNPPHWQNTTL 194 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 WIA +F +K+PM+ H WLP AHV+AP AGS+ LA I+LKMGGYG IR L L P+ + Sbjct: 195 WIACMLAFLVKMPMYGLHLWLPKAHVEAPIAGSMVLAAILLKMGGYGMIRILQALPPMKT 254 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 F ++ +SL +I + M QTD+K LIAYSSI HM V I G+ GAM Sbjct: 255 DTFI-ILLIISLWGMIMTNTTCMQQTDLKSLIAYSSIGHMCLVITAILIQSPWGLTGAML 313 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 M++HG SS LF + Y+R HTR + G+ +P + ++ + N+ LP + Sbjct: 314 LMIAHGFTSSLLFCLTNMSYERTHTRLLILTKGIHMTLPLFTTWWLLAGLTNIALPPSIN 373 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKD 446 F GE ++ S F SN + G++++A Y+L ++ FG K Q+LK Sbjct: 374 FSGEISILSSSFNWSNLTMIHLGLGILITATYTLNMFSLTQFG--KPSHSQKLKQ 426 >gi|6648637|gb|AAF21266.1| NADH ubiquinone oxidoreductase subunit 4 [Chanodichthys erythropterus] Length = 460 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPVSRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNVGTYFLFYTPAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L + P + +W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVILYSQPLLLDFWGHMIWWAVCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTITLTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|330371414|gb|AEC12678.1| NADH dehydrogenase subunit 4 [Hypselobarbus curmuca] Length = 460 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRSYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQFNSWGYTIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L P++ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPMSKELTYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTATWWFLANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L+ RE ++ Sbjct: 413 LMSQRG-QVPNHITGLQPFHTREHLLM 438 >gi|326909354|ref|YP_004327624.1| NADH dehydrogenase subunit 4 [Cobitis takatsuensis] gi|300508073|dbj|BAJ11459.1| NADH dehydrogenase subunit-4 [Cobitis takatsuensis] Length = 460 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 136/386 (35%), Positives = 210/386 (54%), Gaps = 13/386 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLHSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTATWWFIANLANLALPPLPNLMGELAIISTLFNWSPWTILLTGAGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRER 452 L+ G + + L RE Sbjct: 411 LFLMSQRGPTP-PHITGLPPFHTREH 435 >gi|194303759|gb|ACF41294.1| NADH dehydrogenase subunit 4 [Gadus morhua] Length = 461 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPINRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNNTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|115344909|emb|CAJ56958.1| NADH dehydrogenase subunit 4 [Monachus schauinslandi] Length = 447 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 129/380 (33%), Positives = 205/380 (53%), Gaps = 9/380 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSTPLLALTTWLLPLMLMASQFHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGMYFLFYTLVGSLPLLVALLSIQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++ L+A +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 178 MLQLWAQPTLNSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + L PL S P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITMLLNPLTSSTAYPFMM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 297 VIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQGLLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP T IGE V+M+ F SN +L ++++A+YSL++ Sbjct: 357 TWWLMASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITAMYSLYMLITTQR 416 Query: 434 GVSKCEKVQQLKDLSLRERC 453 G ++ +K RE Sbjct: 417 G-KYTHHIKNIKPSFTRENA 435 >gi|126215455|ref|YP_001054863.1| NADH dehydrogenase subunit 4 [Abudefduf vaigiensis] gi|126143588|dbj|BAF47324.1| NADH dehydrogenase subunit 4 [Abudefduf vaigiensis] Length = 460 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 204/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FINQYMATDPLSTPLLVLTCWLLPLMILASQNHTSSEPVNRQRMYITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L AM F+ ++W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYAPAMELTSFADKFW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMTCWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|5835494|ref|NP_007519.1|ND4_13504 NADH dehydrogenase subunit 4 [Glis glis] gi|3127905|emb|CAA04839.1| NADH-ubiquinone oxidoreductase subunit IV [Glis glis] Length = 459 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 132/358 (36%), Positives = 204/358 (56%), Gaps = 16/358 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF---REYMIAFLV-LESMVIGAFLSLDMLL 136 D +S L++LTT+L P +L+S + + ++ I L+ L++ +I F + +++L Sbjct: 58 TDSLSSPLLILTTWLFPLMMLASQNHLTKETTTRKKLFITILISLQTFLIMTFSATELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L +V+ + + +S + Sbjct: 118 GYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLL---IVLIYIQISSGSL 174 Query: 196 DLYAMS------KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + MS FP+S MW+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 NFLIMSFTSPQLIFPWSNNL-MWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG +R + L P+ P + LSL +I S + + QTD+K LIAYSS++ Sbjct: 234 ILLKLGGYGMMRITVILDPMTETMTYPFLM-LSLWGMIMTSSICLRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V I I S GA M++HGL SS LF Y+R H+R + GL + Sbjct: 293 HMGLVIIAILSQTAWSFMGATGLMIAHGLTSSLLFCLANSNYERTHSRTLLLARGLQMIL 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P ++ + N+ LP T IGE L+I+S F SN +L ++++ALYS+++ Sbjct: 353 PLMGTWWILANLTNLALPPTINLIGELLIILSTFSWSNFTIILTGLNMLITALYSIYM 410 >gi|332886884|dbj|BAK23000.1| NADH dehydrogenase subunit 4 [Aspidoparia morar] Length = 460 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 136/386 (35%), Positives = 211/386 (54%), Gaps = 11/386 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQAFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQQSAGTL 175 Query: 193 SIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L M+ + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLMLPHAQLMTATSWGHKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR ++ L PL+ Q P + L+L II L+ + QTD+K LIAYSS+ Sbjct: 235 VLLKLGGYGMIRIMVVLDPLSKQLIYPFMI-LALWGIIMTGLMCLRQTDLKSLIAYSSVG 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 294 HMGLVAGGILIQTPWGFSGAIILMIAHGLASSALFCLANTSYERTHSRTMILARGMQMIF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + ++AN+ +P +GE ++I ++F S VL G +++A YSL++++ Sbjct: 354 PLATAWWFLASLANLAMPPLPNLMGEIMIITAMFNWSPWTIVLTGLGTLITASYSLYMFQ 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G V L RE ++ Sbjct: 414 TSQRGTVP-NHVINLPPFHTREHLLL 438 >gi|39981083|gb|AAR33074.1| NADH dehydrogenase subunit 4 [Balaenoptera bonaerensis] Length = 459 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 129/356 (36%), Positives = 204/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKS-IQE---NFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S I+E + Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLILTMWLLPLMLMASQSHLIKEPPVRKKLYITMLITLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+V + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL---QNTTGTLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWVQPLSTSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLADVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MS+ S L +V++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSIXSWSXPTIXLMRTNIVITALYSLYM 410 >gi|295065505|ref|YP_003587275.1| NADH dehydrogenase subunit 4 [Bison bonasus] gi|294679587|gb|ADF29593.1| NADH dehydrogenase subunit 4 [Bison bonasus] Length = 459 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPMHNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSAFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|213136007|gb|ACJ43566.1| NADH dehydrogenase subunit 4 [Cynops ensicauda] Length = 459 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 205/364 (56%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S VD IS L+VLT +L P L+S ++ + R Y+ +L++ +I AF Sbjct: 51 FTSMSTSVDSISSPLLVLTCWLLPLMTLASQGHLKTSPLPRQRTYLTMLTLLQASLIIAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +++LFYI FE +LIP +II WG ER+ A F YT GS+ +L A++++ + Sbjct: 111 SSTELILFYIAFETTLIPTLIIITRWGNQVERLNAGTYFLFYTLAGSLPLLVALLIL--Q 168 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 S+ + P +Q + +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 169 NTLGSLSLALVNTMEPMVLQSYTSKMLWLACLLAFMVKMPLYGAHLWLPKAHVEAPVAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR L P+ + P + L+L ++ SL+ M QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGIIRITTILGPMTKEMSYPFMV-LALWGVVMTSLICMRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V I G GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 288 YSSVSHMGLVIAAIMMQTPWGTTGAVILMVSHGLISSALFCLANMNYERTHSRTLLLVRG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P ++ ++NM LP T GE +++S+F S ++ G +++A Y+ Sbjct: 348 AQATLPLMTTWWLIANLSNMALPPTMNLWGELTIMVSLFNWSPWTILITGAGALITASYT 407 Query: 425 LWLY 428 L+++ Sbjct: 408 LYMF 411 >gi|222836588|ref|YP_002586851.1| NADH dehydrogenase subunit 4 [Cetomimus sp. AMS I34481001] gi|222051540|dbj|BAH15229.1| NADH dehydrogenase subunit 4 [Cetomimus sp. AMS I34481001] Length = 460 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P I++S + E R Y+ L+ +I AF + Sbjct: 54 SLYMAADPLSAPLLVLTCWLLPLAIIASQNHMLEEPLNRQRTYISLLTFLQLFLILAFTA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TELIMFYIMFEATLIPTLVIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNDTG 173 Query: 191 TSSIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L A ++ + W W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLPFSKAQQLGSYADKAW-WLGCLMAFLVKMPLYGIHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L II + + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRVMVMLEPLTKELSYPFIIF-ALWGIIMTASICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTSWGFTGALTLMIAHGLASSALFCLANTNYERTHSRTMILARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + ++AN+ LP +GE ++I ++F S ++ G V++A YSL+L Sbjct: 352 LLPLMASWWFIASLANLALPPLPNLMGELMIISALFNWSPWTLLITGTGTVITASYSLYL 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|3805898|emb|CAA68114.1| NADH dehydrogenase 4 [Gadus morhua] Length = 461 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNHTERLNAGTYFLFYTLAGSLPLLVALLMLQNNTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIITGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|221145627|ref|YP_002519894.1| NADH dehydrogenase subunit 4 [Acreichthys tomentosus] gi|219806945|dbj|BAH10313.1| NADH dehydrogenase subunit 4 [Acreichthys tomentosus] Length = 460 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 134/375 (35%), Positives = 206/375 (54%), Gaps = 17/375 (4%) Query: 69 HWIDYF-------CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAF 118 HW+ + +L D +S L+VL+ +L P IL+S + EN + I+ Sbjct: 40 HWLKNISETGWTTTNSYLATDTLSTPLLVLSCWLLPLMILASQNHLALEPENRQRLYISL 99 Query: 119 LV-LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSI 176 L L+ +I AF + ++++FY+ FEA+LIP V+I WG +ER+ A F YT GS+ Sbjct: 100 LTSLQIFLILAFGATEVMMFYVMFEATLIPTLVLITRWGNQTERLNAGTYFLFYTLAGSL 159 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLP 233 +L A+ +M T S++ L S ++W W +F +K+P++ H WLP Sbjct: 160 PLLVALSLMYATTGTLSLLILQYSEPLHLSTLADKFW-WAGCMLAFLVKMPLYGVHLWLP 218 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 AHV+AP AGS+ LA ++LK+GGYG +R L+ L PL + P I L++ II + Sbjct: 219 KAHVEAPVAGSMVLAAVLLKLGGYGMMRMLVILDPLTKELSYPFII-LAVWGIIMTGSIC 277 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTD+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Y+R Sbjct: 278 LRQTDLKSLIAYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYER 337 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 H+R + GL +P A + ++AN+ LP +GE ++I S+ S L Sbjct: 338 THSRTMILARGLQTVLPLMATWWFISSLANLALPPLPNLMGELMIITSLLNWSWWTIALT 397 Query: 414 SFGVVLSALYSLWLY 428 G +++A YSL+++ Sbjct: 398 GVGTLITAGYSLYMF 412 >gi|2829051|gb|AAD10083.1| NADH ubiquinone oxidoreductase subunit 4 [Xenocypris davidi] Length = 460 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AG++ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGAMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|57544860|ref|NP_976187.2| NADH dehydrogenase subunit 4 [Sebastes schlegelii] Length = 460 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 133/358 (37%), Positives = 203/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQGHTALEPINRQRTYISLLTSLQVFLIMAFGATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + + S Sbjct: 117 LMFYVMFEATLIPTLIIITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLLLQKDTGSLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ + S P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTIQYASSTPLSSYADKLW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR ++ L PL + P I L+L ++ + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMVMLGPLTKELSYPFII-LALWGVVMTGSTCLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G+ GA+ M++HGL SSALF Y+RLH+R + GL +P Sbjct: 295 MGLVVGGILIQTPWGLAGAVILMIAHGLTSSALFCLANTNYERLHSRTMLLARGLQMVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE L+I S+F S VL G +++A YSL+++ Sbjct: 355 LMATWWFIASLANLALPPLPNLMGELLIITSLFGWSWWTLVLTGAGTLITASYSLYMF 412 >gi|157778197|gb|ABV70370.1| NADH dehydrogenase subunit 4 [Bos taurus] Length = 459 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I L+ L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLISLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPVHNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|197311646|ref|YP_002154578.1| NADH dehydrogenase subunit 4 [Iso hawaiiensis] gi|197304312|dbj|BAG69268.1| NADH dehydrogenase subunit 4 [Iso hawaiiensis] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 207/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + Sbjct: 54 SPYMATDPLSTPLLVLTCWLLPLMILASQNHTSNEPESRQRVYISLMTSLQIFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSAG 173 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + P ++ ++W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQFTPQAPLLTYADKFW-WTACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR + L PL + P I L+L ++ V + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRMMAMLEPLTKELSYPFIV-LALWGVVMMGSVCLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGLSGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + ++AN+ LP +GE ++I S++ S ++ G +++A YSL++ Sbjct: 352 LLPLMATWWFISSLANLALPPLPNLMGELMIITSLYNWSWWTLLVTGAGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|215979773|ref|YP_002333267.1| NADH dehydrogenase subunit 4 [Lagocephalus wheeleri] gi|215422723|dbj|BAG85557.1| NADH dehydrogenase subunit 4 [Lagocephalus wheeleri] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/359 (36%), Positives = 205/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLSLD 133 ++ D +S L++L+ +L P IL+S + QE R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLILSCWLLPLMILASQSHTAQEPINRQRTYISLLTSLQFFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 MIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTNGSL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L P + + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLAHSGPLPLTTYANKLW-WAACILAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L II S + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRILVTLEPLTKELSYPFIV-LALWGIIMTSSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGSAGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQTAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE +++ S+F S L G +++A YSL+++ Sbjct: 354 PLMAAWWFIASLANLALPPLPNLMGELMILTSLFNWSWWTIALTGLGTLITASYSLYMF 412 >gi|134303143|ref|YP_001122896.1| NADH dehydrogenase subunit 4 [Oncorhynchus masou 'Biwa'] gi|117957330|gb|ABK59107.1| NADH dehydrogenase subunit 4 [Oncorhynchus masou 'Biwa'] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL++ + R Y+ + L++ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILANQNHLSPEPLNRQRAYISLLVSLQTFLVLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDSG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L M P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYMQ--PVHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVVLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFSGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFMASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + L+ RE ++ Sbjct: 411 LFLMTQRGPLPSHII-ALEPTHTREHLLI 438 >gi|42632239|ref|NP_976122.1| NADH dehydrogenase subunit 4 [Sorex unguiculatus] gi|16416432|dbj|BAB70640.1| NADH dehydrogenase subunit 4 [Sorex unguiculatus] Length = 459 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 128/353 (36%), Positives = 202/353 (57%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI---QENFREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + E ++ I+ L+L ++ +I F + +++LF Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLMNETETRKKLYISMLILLQTFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS--SI 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T +I Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALIYIQNLSGTLNFTI 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L+A + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 TQLWAHNILNSWSNDFLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P+ P + LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRVTVLLNPITDTMAYPFLL-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILIQTPWSYMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP T IGE V+++ F SN +L VV++ALYSL++ Sbjct: 358 WWLLASLTNLALPPTINLIGELFVMLTSFSWSNMTMILMGANVVITALYSLYM 410 >gi|260766556|gb|ACX50302.1| NADH dehydrogenase subunit 4 [Catostomus catostomus] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LVMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMMILQYSQPLVLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFAANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGAGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + V L RE ++ Sbjct: 413 LMSQRGPTPTHIV-GLPPFHTREHLLM 438 >gi|2829045|gb|AAD10079.1| NADH ubiquinone oxidoreductase subunit 4 [Xenocypris argentea] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLGNTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|284794654|ref|YP_003412013.1| NADH dehydrogenase subunit 4 [Pseudogobio esocinus] gi|284507223|dbj|BAI67653.1| NADH dehydrogenase subunit-4 [Pseudogobio esocinus] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMFVIQYSQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAAYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHIMKLPPFHTREHLLM 438 >gi|280978331|ref|YP_003345264.1| NADH dehydrogenase subunit 4 [Facciolella oxyrhyncha] gi|271280755|dbj|BAI53479.1| NADH dehydrogenase subunit 4 [Facciolella oxyrhyncha] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/389 (33%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S + + R Y+ + L+ ++ AF + Sbjct: 54 NMYLATDPLSTPLLVLSCWLLPLMILASQNHMTPEPESRQRSYITLLISLQMLLTLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLIMQHTKPLDMTTWGDKLWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLNPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE L+I+++F S +L G +++A YSL+ Sbjct: 351 MVLPLMAAWWFLANLANLALPPLPNLMGEMLIIVAMFNWSYWSIILTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTP-NHIIGLEPSHSREHLLI 438 >gi|62184448|ref|YP_220598.1| NADH dehydrogenase subunit 4 [Jenkinsia lamprotaenia] gi|58430869|dbj|BAD89211.1| NADH dehydrogenase subunit 4 [Jenkinsia lamprotaenia] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/364 (37%), Positives = 205/364 (56%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S ++ VD +S L+VLT +L P IL+S + R Y+ L++ +I AF Sbjct: 52 FSSTYIAVDPLSAPLLVLTCWLLPLMILASQNHTRLEPISRQRLYITLLASLQAFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 112 GATEVIMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLHHT 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T S++ L S P + W W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 LGTLSMLTLNFAS--PLFLSSWGDKIWWVACLLAFLVKMPLYGVHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMIRMSAILDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L P A + +AN+ LP +GE ++I ++F S +L G +++A YS Sbjct: 349 LQVLFPLAATWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTLILTGVGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|332887122|dbj|BAK23221.1| NADH dehydrogenase subunit 4 [Barilius bendelisis] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 142/398 (35%), Positives = 214/398 (53%), Gaps = 15/398 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + HLG D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NTHLGTDPLSTPLLVLTCWLLPLMILASQNHINSEPISRQRLYISLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG SER+ A F YT GS+ +L AI+++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGSQSERLNAGTYFLFYTLAGSLPLLVAILLLQRSTG 173 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T + L M+ P + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLCMFMLPTMNSAPMDSWGHKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL+ + P + +L II L+ + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRIMVVLNPLSRELVYPFMIP-ALWGIIMTGLMCLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VGHMGLVAGGILIQTPWGFSGATILMIAHGLASSALFCLANTSYERTHSRTMVLARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P AV V +AN+ +P +GE ++I ++F S L G +++A YSL++ Sbjct: 352 VFPLGAVWWFVANLANLAMPPLPNLMGELMIITALFNWSPWTIALTGAGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVL 461 + G + L RE ++ P+A+L Sbjct: 412 FLTSQRGQVPNHAI-NLPPSHTREHLLITLHLIPMALL 448 >gi|82492296|gb|ABB78034.1| NADH dehydrogenase subunit 4 [Oncorhynchus mykiss] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 203/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRAYISLLVSLQTFLVLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDNG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYTQ--PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P V ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|152962715|dbj|BAF73953.1| NADH dehydrogenase subunit 4 [Procyon lotor] Length = 459 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/383 (33%), Positives = 205/383 (53%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P + +S K + Y+ + L+ +I F + ++++ Sbjct: 58 TDSLSAPLLVLTTWLLPLMLTASQFHLAKETLTRKKLYITMLITLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLLPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALL---WIQNDLGTL 174 Query: 196 D-LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L A + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 175 NFLIAQYWIQHTSSTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L P + + A LSL +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRITVLLNP-TTNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + GA M++HGL SSALF Y+R H+R + GL +P Sbjct: 294 MALVIAAVLIQTPWSYTGATVLMVAHGLTSSALFCLANSNYERTHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ +M N+ LP T IGE V+M+ F SN +L ++++ALY+L++ Sbjct: 354 LMAAWWLLASMTNLALPPTINLIGELFVVMASFSWSNMTIILMGMNIIITALYTLYMLIM 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G S + ++ +K RE Sbjct: 414 TQRGKS-TQHIKNIKPSFTRENA 435 >gi|55583368|ref|YP_138288.1| NADH dehydrogenase subunit 4 [Ichthyophis bannanicus] gi|46981631|gb|AAT07882.1| NADH dehydrogenase subunit 4 [Ichthyophis bannanicus] Length = 454 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/382 (34%), Positives = 210/382 (54%), Gaps = 11/382 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++L+ +LTP +L+S + N R Y+ F+ L+ +I AF + +++L Sbjct: 58 IDQLSAPLMILSCWLTPMMMLASQNHMNNNTMNHQRIYISMFISLQIALILAFSATELML 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+LIP +II WG +ER+ A F YT GS+ +L AI+ T + Sbjct: 118 FYITFEATLIPTLIIITRWGNQTERLNAGTYFIFYTLMGSLPLLIAILRYKMNSHTFTT- 176 Query: 196 DLYAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + + ++ +P + Q W W A +F +K+P + H WLP AHV+AP AGS+ LA ++LK Sbjct: 177 NTWQLTNYPNMATSQIW-WFACLIAFMVKMPWYGLHLWLPKAHVEAPIAGSMILAAVLLK 235 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L P + P I LSL +I S + + QTD+K LIAYSS++HMG Sbjct: 236 LGGYGIMRISSVLTPFTKESIYPFI-ILSLWGLIMTSSICLRQTDLKSLIAYSSVSHMGL 294 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V GA M++HGL SS LF Y+R H+R + G+ +P A Sbjct: 295 VISAGLIQTTWSFSGASTLMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGMQLILPLMA 354 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++NM +P ++ +GE ++ ++F SN ++ G +++ALY+L ++ Sbjct: 355 TWWLLANLSNMAIPPSTNLLGELTIMSALFNWSNWTIIITGMGTLITALYTLNMFLTTQH 414 Query: 434 GVSKCEKVQQLKDLSLRERCMV 455 G S+ + Q K RE ++ Sbjct: 415 GPSQ-NHLNQSKPTHTREHLLM 435 >gi|260766592|gb|ACX50326.1| NADH dehydrogenase subunit 4 [Catostomus santaanae] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LVMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMMILQYSQPLVLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFAANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGAGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + V L RE ++ Sbjct: 413 LMSQRGPTPSHIV-GLPPFHTREHLLM 438 >gi|221145473|ref|YP_002519686.1| NADH dehydrogenase subunit 4 [Odonus niger] gi|219806875|dbj|BAH10248.1| NADH dehydrogenase subunit 4 [Odonus niger] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 205/362 (56%), Gaps = 16/362 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 +L DG+S L+VLT +L P IL+S + Q R Y+ L+ +I AF + + Sbjct: 56 YLATDGLSTPLLVLTCWLLPLMILASQNHLTPEPQSRQRMYISLLTSLQFFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + T+ Sbjct: 116 ILMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL---QNTA 172 Query: 193 SIIDLYAMSKFPFSI------QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + L + F+ ++W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 GTLSLLTLQHTTFNCPDTWASKFW-WTGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMLTILDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 291 SVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGFQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A+ V ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 IALPLMAMWWFVASLANLALPPLPNLMGELMIITSLFNWSWWTLILTGAGTLITAGYSLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|38707622|ref|NP_944681.1| NADH dehydrogenase subunit 4 [Hyperoodon ampullatus] gi|38602497|emb|CAD87958.1| NADH4 protein [Hyperoodon ampullatus] Length = 459 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/382 (34%), Positives = 210/382 (54%), Gaps = 11/382 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +E + Y+ ++L++++I F + +++LF Sbjct: 59 DSLSTPLLMLTMWLLPLMLMASQSHLLKETLIRKKLYITMLIMLQTLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+ + T + + Sbjct: 119 YITFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALTYLQNTMGTLNFLL 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 L ++ P S + MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 LQHWTQ-PLSPSWSNTLMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + PL +++ A LSL +I S + + QTD+K LIAYSSI+HM Sbjct: 238 LGGYGMLR-ITPLLNPLTEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSISHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF +R H+R + GL +P A Sbjct: 297 VIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNDERTHSRTMILARGLQIFLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP T IGE LV+MS F SN +L +V++ALYSL++ Sbjct: 357 TWWLLASLTNLALPPTINLIGELLVVMSTFSWSNPTIILMGTNIVITALYSLYMLIMTQR 416 Query: 434 GVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 417 G-KHTHHINNLTPSFTREHALM 437 >gi|166240007|ref|NP_007818.2|ND4_15065 NADH dehydrogenase subunit 4 [Gadus morhua] gi|2499264|sp|P55781|NU4M_GADMO RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNHTERLNAGTYFLFYTLAGSLPLLVALLMLQNNTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIITGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|213136133|gb|ACJ43683.1| NADH dehydrogenase subunit 4 [Mertensiella caucasica] Length = 458 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/357 (36%), Positives = 208/357 (58%), Gaps = 9/357 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + +D IS L++LT +L P L+S ++ N R Y++ L++ +I AF S ++ Sbjct: 56 MTIDQISSPLLILTCWLLPLMTLASQNHLKPNPITRQRTYLMMLTALQTSLILAFSSTEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++V+ + S Sbjct: 116 IMFYIAFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLVLQTSLGSLS 175 Query: 194 II--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 +I D ++ ++ + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 LILIDFLQLNMTLYTNKI-LWLACLLAFLVKMPLYGIHLWLPKAHVEAPIAGSMILAAVL 234 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR + L PL + P F L++ ++ SL+ M QTD+K LIAYSS++HM Sbjct: 235 LKLGGYGIIRISVMLSPLMKEMSYP-FFLLAIWGVVMTSLICMRQTDLKSLIAYSSVSHM 293 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V I + GA+ M SHGL SSALF + Y+R H R + G +P Sbjct: 294 GLVIAAILIQTPWSMTGAVILMFSHGLTSSALFCLANLNYERTHNRTLLLIRGSQTILPL 353 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A ++ + NM LP ++ GE ++++S+F S +L G +++ALY+L+++ Sbjct: 354 MATWWLLTGLLNMALPPSTNLWGELMIMVSLFNWSPWTILLTGAGTLITALYTLYMF 410 >gi|166091630|ref|YP_001654975.1| NADH dehydrogenase subunit 4 [Ctenopharyngodon idella] gi|165935037|gb|ABY74760.1| NADH dehydrogenase subunit 4 [Ctenopharyngodon idella] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMTQRGPTPIH-ITKLPPFHTREHLLM 438 >gi|94481674|gb|ABF21389.1| NADH dehydrogenase subunit 4 [Gadus macrocephalus] Length = 461 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGVGTLITAAYSLYMF 412 >gi|222836327|ref|YP_002586838.1| NADH dehydrogenase subunit 4 [Procetichthys kreffti] gi|222051526|dbj|BAH15216.1| NADH dehydrogenase subunit 4 [Procetichthys kreffti] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 206/359 (57%), Gaps = 12/359 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + Q R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHMSVEPQNRQRMYISLMTSLQVFLIMAFAATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYVMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLLQNDTGTLS 176 Query: 194 IIDLYAMSKFPFSIQY----WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 ++ L+ +K P + Y W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 MLTLH-YNKTPQLLSYADKLW-WAGCLLAFLVKMPLYGIHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIVLEPLTKELCYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMILTRGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I+S+F S +L G +++A YSL+++ Sbjct: 354 PLMTSWWFIASLANLALPPLPNLMGELMIIVSLFNWSWWSLLLTGLGTMITAGYSLYMF 412 >gi|37620634|gb|AAQ95126.1| NADH dehydrogenase subunit 4 [Neovison vison] Length = 459 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/388 (33%), Positives = 206/388 (53%), Gaps = 29/388 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P I++S + + + Y+ ++L+ +I F + ++++F Sbjct: 59 DSLSAPLLALTTWLLPLMIMASQHHLSKETLMRKKLYITMLIMLQLFLIMTFAATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V W + ++ Sbjct: 119 YILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALV---WIQNNLGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 L-------LIIQYWAQPLLNSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTLLNPLTNHMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIMAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T +GE V+M+ F SN +L + ++A+YS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIILMGINITITAIYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KYTHHIKSIKPSFTREN 434 >gi|27885309|gb|AAO26135.1| NADH dehydrogenase subunit 4 [Oxypappus scaber] Length = 417 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/382 (33%), Positives = 212/382 (55%), Gaps = 11/382 (2%) Query: 63 QMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 Q++E Y WI+ F + LG+DG+SI V+LT F+T L++W +++ R + L + Sbjct: 11 QLVEDYKWINSFDFRWKLGIDGLSIGPVLLTGFITTLATLAAWPVTRDS-RLFHFLMLAM 69 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181 S IG+F S D+LLF+I +E LIP+++++ +WGG +R+Y+A KF LYT GSIF+L Sbjct: 70 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGGSIFLLMG 129 Query: 182 I--VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + V + + + + +P +++ +I Sbjct: 130 VLGVGLYGSNEPTLNFETSVNQSYPVALEIIFYIGXXXXXXXXXXXXXXXXXXXXXXXXX 189 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 + + LAGI+LKMG YG IR + L A F+P + + + IIYA+L S Q ++ Sbjct: 190 HYSTCMLLAGILLKMGAYGLIRINMELLAHAHAIFSPWLMIVGTMQIIYAALTSPGQRNL 249 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KK IAYSS++HMG++ IGI S +G+ GA+ Q++SHG + +ALFF G YDR+ + Sbjct: 250 KKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYL 309 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-------TVAVL 412 GG+ MP+ + F+MA++ LPG SGF+ E +V + + + + + Sbjct: 310 DEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGLITSQKYLLMPKIAITFV 369 Query: 413 ASFGVVLSALYSLWLYRKVVFG 434 + G++L+ +Y L + R++ +G Sbjct: 370 MAIGMILTPIYLLSMSRQMFYG 391 >gi|2829039|gb|AAD10075.1| NADH ubiquinone oxidoreductase subunit 4 [Xenocypris argentea] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I F + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMGFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLSSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LTSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|124055116|gb|ABM89730.1| NADH dehydrogenase subunit 4 [Chamaeleo arabicus] Length = 449 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/379 (34%), Positives = 211/379 (55%), Gaps = 13/379 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIGAFLSLD 133 +L +D IS L+ L+ +L P IL+S + Q R ++ L++++ A S + Sbjct: 55 YLSIDQISAPLLTLSYWLLPIAILASQNHLKHTTQMQTRMFLTCLTSLQTLLTLALSSTN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LF+I FEA+LIP +II WG ER+ A F YT S+ +L A+++M ++ Sbjct: 115 LILFFIMFEATLIPTMIIITRWGSQKERLTAGMYFMFYTLISSMPLLIALLMMNYQMNNL 174 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 SII + +K P +I +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 175 SIILMPTTNK-PNTI---LWLACTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 230 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + P+ L + P I ++L +I SL+ + Q D+K LIAYSS++HMG Sbjct: 231 KLGGYGMMR-ISPMLCLTKTLYYPFII-MALWGMIMTSLICLRQPDLKSLIAYSSVSHMG 288 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V S + GAM M++HG+ SS LF ++Y+R HTR + G+ +P Sbjct: 289 LVVAATMIQTPSSLTGAMILMVAHGITSSMLFCLANMMYERTHTRTLTMMQGIQTTLPLM 348 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ + NM +P T +GE ++ +VF S +L ++A+YS++++ + Sbjct: 349 TAFWLMANLTNMAIPPTINLMGEIMITSTVFNWSPPTLILTGSAATITAIYSMYMFSAIQ 408 Query: 433 FGVSKCEKVQQLKDLSLRE 451 G K +K + RE Sbjct: 409 QG--KTQKDMMIYPPQTRE 425 >gi|322422657|ref|YP_004222223.1| NADH dehydrogenase subunit 4 [Pollachius pollachius] gi|317423502|emb|CBY85651.1| NADH dehydrogenase 4 [Pollachius pollachius] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 206/361 (57%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLML--QNSTG 173 Query: 193 SI---IDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+ I YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S +L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGIGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|107991055|ref|YP_626630.1| NADH dehydrogenase subunit 4 [Batrachuperus pinchonii] gi|51891124|gb|AAU12946.1| NADH dehydrogenase subunit 4 [Batrachuperus pinchonii] gi|84371599|gb|ABC56043.1| NADH dehydrogenase subunit 4 [Batrachuperus pinchonii] Length = 459 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 207/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++G+D +S L++LT +L P IL+S ++ N R Y+ ++L++ +I AF + Sbjct: 53 NKYMGLDPLSSPLLILTCWLLPMMILASQNHLKNNPENRQRTYITMMIILQTSLILAFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM---CW 187 +M++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 113 TEMIMFYIAFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLQNFSG 172 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + + M +S + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 SLSLLLLELINPMQLMMYSDKIW-WTACLMAFMVKMPLYGVHLWLPKAHVEAPIAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL+ + P I L+L +I S++ M QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGILRVSIMLTPLSKELSYPFII-LALWGVIMTSMICMRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V + G + M+SHGL+SSALF + Y+R H+R + G Sbjct: 291 VSHMGLVIAAALIQTPWSLSGVIILMISHGLISSALFCLANMNYERTHSRTLLLMRGTQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++NM LP + GE +++S+F SN ++ +++A Y+L++ Sbjct: 351 MLPLMATWWLLVNLSNMALPPSLNLWGELTIMVSLFNWSNWTILITGVATLITASYTLYM 410 Query: 428 Y 428 + Sbjct: 411 F 411 >gi|260766583|gb|ACX50320.1| NADH dehydrogenase subunit 4 [Catostomus occidentalis] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 203/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLASLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TELIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMTILQYSQPLVLESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV +AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFAANLANLALPPLPNLMGELMIITSLFNWSPWTIALTGAGTLITAGYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|296905331|gb|ADH84027.1| NADH dehydrogenase subunit 4 [Sinibotia superciliaris] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/383 (35%), Positives = 208/383 (54%), Gaps = 13/383 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPMMILASQNHINPEPINRQRLYITLLASLQTFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNTTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPMTLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAAWWFIANLANLALPPLPNLMGEIMIITTLFNWSPWTIALTGTGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 G + + L RE Sbjct: 413 LMTQRGPTP-HHIMGLPPFHTRE 434 >gi|207560004|gb|ACI24597.1| NADH dehydrogenase subunit 4 [Pseudois nayaur] Length = 459 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 202/353 (57%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ L+L + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLARKKLFISMLILLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + + + Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALVYIQNTMGSLNFLV 178 Query: 197 L-YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LQYWVQPMPNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L L P P I LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITLLLNPTTDSMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP T +GE V+MS F SN +L +V++ALYSL++ Sbjct: 358 WWLLASLTNLALPPTINLVGELFVVMSTFSWSNITIILMGLNMVITALYSLYM 410 >gi|76262531|gb|ABA41419.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/392 (34%), Positives = 209/392 (53%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLASVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLANLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|38707460|ref|NP_944720.1| NADH dehydrogenase subunit 4 [Inia geoffrensis] gi|38602539|emb|CAD87997.1| NADH4 protein [Inia geoffrensis] Length = 459 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/382 (35%), Positives = 206/382 (53%), Gaps = 11/382 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P + +S K + Y+ +VL++++I F + +++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLTASQLHLKKETPTRKKLYITMLIVLQTLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YITFEATLIPTLIIITRWGNQAERLNAGLYFLFYTLMGSLPLLVALMYLQNTLGSLNFLL 178 Query: 197 LYAMSKFPFSIQYW---MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 L +K P SI + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 LQYWTK-PLSISWSNMILWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L PL P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMLRITSILNPLTENMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V I GA+ M++HGL SS LF Y+R H+R + GL +P A Sbjct: 297 VITAILIQTPWSHMGAVALMVAHGLTSSVLFCLANSNYERTHSRTMILARGLQILLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ + N+ LP T +GE LVI S F S +L +V++ALYSL++ Sbjct: 357 TWWLLAGLMNLALPPTINLVGELLVITSTFSWSKPTIILMGMNIVITALYSLYMLIMTQR 416 Query: 434 GVSKCEKVQQLKDLSLRERCMV 455 G + L S RE ++ Sbjct: 417 G-KNTPHINNLIPSSTREHALM 437 >gi|219524211|ref|YP_002456355.1| NADH dehydrogenase subunit 4 [Hydropotes inermis] gi|161824388|gb|ABX79763.1| NADH dehydrogenase subunit 4 [Hydropotes inermis] Length = 459 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYISMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + + ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALVYL---QNINGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 FML-------IQYWVEPLSNSWSNVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMMRITTLLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|164414460|ref|YP_001648366.1| NADH dehydrogenase subunit 4 [Hypophthalmichthys nobilis] gi|163658609|gb|ABY28400.1| NADH dehydrogenase subunit 4 [Hypophthalmichthys nobilis] Length = 460 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLSSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-SHITKLPPFHTREHLLM 438 >gi|157056691|gb|ABV02285.1| NADH dehydrogenase subunit 4 [Plecoglossus altivelis] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/360 (36%), Positives = 201/360 (55%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHISPEPVNRQRTYISLLASLQMFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ E T Sbjct: 116 IIMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNETGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+I L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITL--QYSQPLHLSAWGDKLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR +L L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRMMLMLDPLSKELAYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTAYERTHSRTMLLARGLQMA 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A V +AN+ LP +GE ++I ++F S + G +++A YSL+L+ Sbjct: 353 LPLTATWWFVANLANLALPPLPNLMGELVIITAMFNWSYWTIAITGVGTLITASYSLYLF 412 >gi|37620632|gb|AAQ95125.1| NADH dehydrogenase subunit 4 [Gulo gulo] Length = 459 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/389 (33%), Positives = 207/389 (53%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L++LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLMLTTWLLPLMLMASQYHLSKETLTRKKLYITMLVLLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALL---WVQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NL-------LVIQYWAPPLLDSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL + + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITVLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+M+ F SN +L + ++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIILMGINITITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G ++ +K RE Sbjct: 407 SLYMLITTQRG-KYTHHIKNVKPSFTREN 434 >gi|253729511|ref|YP_003029811.1| NADH dehydrogenase subunit 4 [Thymallus thymallus] gi|226407508|gb|ACO52896.1| NADH dehydrogenase subunit 4 [Thymallus thymallus] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/360 (37%), Positives = 206/360 (57%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPLNRQRTYITLLVSLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P ++I WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLLPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDNGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S++ L SK P ++ W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTL-QYSK-PLNLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLTEELAYPFIA-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 293 GHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQVV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P V ++AN+ LP +GE ++I S+F S +L G +++A YSL+L+ Sbjct: 353 LPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSYWTLLLTGVGTLITASYSLYLF 412 >gi|16357160|ref|NP_443264.1|ND4_15810 NADH dehydrogenase subunit 4 [Saurida undosquamis] gi|16266858|dbj|BAB70049.1| NADH dehydrogenase subunit 4 [Saurida undosquamis] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 205/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +LG D + L++LT +L P +L+S I R ++ + L+ +I AF + + Sbjct: 56 YLGTDPLFTPLLILTCWLLPLMVLASQNHISPEPATRQRIFITLLVSLQMFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFY+ FEA+LIP II WG +ER+ A F YT GS+ +L A++++ E T Sbjct: 116 IILFYVMFEATLIPTLFIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNETGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L+ +S P+ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLHYTKPLSLSPWGGKLW-WAACLLAFLVKMPLYGIHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR ++ L P ++ P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRIMVILEPQSTDLAYPFIA-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAAGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQAVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + +AN+ LP +GE ++I S+F S +L G +++A YSL+L+ Sbjct: 354 PLMTTWWFLANLANLALPPLPNLMGELIIISSLFNWSYWTLILTGLGTLITASYSLYLF 412 >gi|192293718|ref|YP_001994441.1| NADH dehydrogenase subunit 4 [Bathytroctes microlepis] gi|190715124|dbj|BAG49367.1| NADH dehydrogenase subunit 4 [Bathytroctes microlepis] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 138/386 (35%), Positives = 210/386 (54%), Gaps = 11/386 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISSEPISRQRSYISLLTFLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L M F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPMHLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P AV +AN+ LP +GE ++I ++F S VL G +++A YSL+L+ Sbjct: 354 PLTAVWWFTANLANLALPPLPNLMGEIMIISTMFNWSPWTLVLTGLGTLITAGYSLYLFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 414 MTQRGPAPAHMI-GLTPYHTREHLLM 438 >gi|148922610|ref|YP_001293719.1| NADH dehydrogenase subunit 4 [Engraulis encrasicolus] gi|148762586|dbj|BAF64032.1| NADH dehydrogenase subunit 4 [Engraulis encrasicolus] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 208/387 (53%), Gaps = 9/387 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S ++ +D +S L+VLT +L P IL+S Q R Y+ L++ +I AF + Sbjct: 54 STYMAIDPLSSPLLVLTCWLLPLMILASQNHTQAEPISRQRMYITLLTSLQAFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 114 TEVIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLALQASTG 173 Query: 191 TSSIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + S+I L + W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMITLNFNELPSLTHQADKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L PL + P I L+L I+ + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRITPILDPLTKEMAYPFIV-LALWGIVMTGTICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G+ GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 293 SHMGLVAGGILTQTPWGLTGAIILMIAHGLTSSALFCLANTSYERTHSRTMALARGMQTL 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S VL G +++A YSL+++ Sbjct: 353 FPLTATWWFIANLANLALPPLPNLMGEMMIITTMFNWSPWSIVLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMTQRGQTPSH-ITALPPYHTREHLLI 438 >gi|119360338|ref|YP_913506.1| NADH dehydrogenase subunit 4 [Gymnocypris przewalskii] gi|119225201|dbj|BAF41567.1| NADH dehydrogenase subunit 4 [Gymnocypris przewalskii] gi|169666031|gb|ACA63673.1| NADH dehydrogenase subunit 4 [Gymnocypris eckloni] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSAPLLVLSCWLLPLMILASQNHINPEPINRQRSYIMLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IILFYIMFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMFMLQYSQPLQLNSWGHMVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVILDPLSKELAYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 GHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLAAVWWFIANLANLALPPLPNLMGEIMIITTLFGWSPWTILLTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE +V Sbjct: 413 LMSQRGPTP-NHIVGLQPFHTREHLLV 438 >gi|310788916|gb|ADP24461.1| NADH dehydrogenase subunit 4 [Puntius nigrofasciatus] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 205/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M FS + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLLIQYSQPMQLNSFSHKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L++ II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLDPLSKELAYPFII-LAMWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQVIF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 354 PLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 >gi|2829024|gb|AAD10065.1| NADH ubiquinone oxidoreductase subunit 4 [Distoechodon tumirostris] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/385 (34%), Positives = 209/385 (54%), Gaps = 13/385 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDML 135 D +S L+VLT +L P IL+S + R Y+ L++ +I AF + +++ Sbjct: 58 ATDPLSTPLLVLTCWLLPLMILASQNHVNPEPISRQRLYITLLTSLQTFLIMAFGATEII 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T ++ Sbjct: 118 MFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTGTL 175 Query: 195 IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 SMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGLVSS LF Y+R H+R + GL P Sbjct: 295 MGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMIFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 355 LTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 415 SQRGPTP-NHITKLPPFHTREHLLM 438 >gi|19682824|emb|CAC84164.1| NADH dehydrogenase subunit 4 [Ovis canadensis] Length = 459 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 205/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ L+L + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLARKKLFISMLILLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T S+ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI--QNTTGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPMPNSWSSTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITLLLNPI-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPSINLIGELFVVMSTFSWSNITIILMGLNMVITALYSLYM 410 >gi|56692522|ref|YP_163994.1| NADH dehydrogenase subunit 4 [Anguilla nebulosa nebulosa] gi|56565480|dbj|BAD78149.1| NADH dehydrogenase subunits 4 [Anguilla nebulosa nebulosa] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMRFEPINRQRSYITLLISLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPLTLSSWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTPSHII-GLEPSHTREHLLI 438 >gi|12248146|ref|NP_073647.1| NADH dehydrogenase subunit 4 [Coregonus lavaretus] gi|12082034|dbj|BAB20716.1| NADH dehydrogenase subunit 4 [Coregonus lavaretus] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 204/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ + L+ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPLNRQRTYISLLVSLQMFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLLQNDNG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMLTLQYTQ--PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILVQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P V ++AN+ LP +GE ++I ++F S+ +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFVASLANLALPPLPNLMGELMIITTMFNWSHWTLLLTGVGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|295641141|gb|ADG22686.1| NADH dehydrogenase subunit 4 [Neovison vison] Length = 459 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/388 (33%), Positives = 206/388 (53%), Gaps = 29/388 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P I++S + + + Y+ ++L+ +I F + ++++F Sbjct: 59 DSLSAPLLALTTWLLPLMIMASQHHLSKETLMRKKLYITMLIMLQLFLIMTFAATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V W + ++ Sbjct: 119 YILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALV---WIQNNLGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 L-------LIIQYWAQPLLNSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTLLNPLTNHMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIMAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T +GE V+M+ F SN +L + ++A+YS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIILMGINITITAIYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++ G ++ +K RE Sbjct: 408 LYMMITTQRG-KYTHHIKSIKPSFTREN 434 >gi|317176785|dbj|BAJ54580.1| NADH dehydrogenase subunit 4 [Pollimyrus adspersus] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/390 (34%), Positives = 212/390 (54%), Gaps = 15/390 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NHYMATDQLSTPLLVLTCWLLPLMILASQNHIAPEPINRQRTYITLLISLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIL---QK 170 Query: 191 TSSIIDLYAMSKF-PFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + + M + P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 DLGTLSMLTMQYYNPTKMTTWGDKIWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R + L PL + P I L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMTVMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGLVSSALF Y+R +R + G+ Sbjct: 290 SSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFSLANTNYERTPSRTLLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + +AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QMILPLMTAWWFITNLANLALPPLPNLMGELMIITSMFNWSYWTIILTGLGTLITAAYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + + L+ RE ++ Sbjct: 410 YMFLMTQRGPTTAHTI-TLQPSHTREHLLM 438 >gi|94481687|gb|ABF21401.1| NADH dehydrogenase subunit 4 [Gadus macrocephalus] Length = 461 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGVGTLITAAYSLYMF 412 >gi|12583945|gb|AAG59695.1| NADH dehydrogenase subunit 4 [Hydropotes inermis] Length = 459 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSAPLLILTMWLLPLMLMASQHHLSKENLTRKKLYISMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + + ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALVYL---QNINGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 FML-------IQYWVEPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMMRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|300470646|dbj|BAJ11135.1| NADH dehydrogenase subunit-4 [Cobitis biwae] gi|300470651|dbj|BAJ11139.1| NADH dehydrogenase subunit-4 [Cobitis biwae] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 211/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLVSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLHSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A V +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLAAAWWFVANLANLALPPLPNLMGELAIISTLFNWSPWTILLTGVGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTP-PHITGLPPFHTREHLLL 438 >gi|2829048|gb|AAD10081.1| NADH ubiquinone oxidoreductase subunit 4 [Xenocyprioides carinatus] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 211/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 SSYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYSQPMLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LVLWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFSWSPWSIALTGGGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L RE ++ Sbjct: 411 MFLMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|45826193|gb|AAS77713.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/391 (34%), Positives = 207/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTARKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+PM +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPMLIIITRWGNQTERLNAGLCFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A +V ++ N+ LP + IGE +I + F N +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLVASLTNLALPPSINLIGELFIITASFSWFNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINNIKPSFTRENALM 437 >gi|207559990|gb|ACI24584.1| NADH dehydrogenase subunit 4 [Ovibos moschatus] Length = 459 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/355 (37%), Positives = 202/355 (56%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ L+L + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLARKKLFISMLILLQLFLIMTFAAAELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI--QNTMGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPMPNSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITLLLNPVTDFMSYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MS SN +L F +VL+ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELLVMMSTLSWSNITIILMGFNMVLTALYSLYM 410 >gi|322422388|ref|YP_004221818.1| NADH dehydrogenase subunit 4 [Jenkinsia sp. CL54] gi|317176351|dbj|BAJ54177.1| NADH dehydrogenase subunit 4 [Jenkinsia sp. CL54] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 136/388 (35%), Positives = 213/388 (54%), Gaps = 15/388 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D IS L++LT +L P +L+S +Q + R ++ + L+ +++ AF + + Sbjct: 56 YMATDPISTPLLILTCWLLPLMLLASQNHVQADPTSRQRTFITLLVSLQLLLVLAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFY+ FEA+LIP +II WG +ER+ A YT GS+ +L A++ + +S Sbjct: 116 VILFYVMFEATLIPTLIIITRWGSQAERLNAGTYLLFYTLAGSLPLLVALLAL---NLSS 172 Query: 193 SIIDLYAMS-KFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + + MS P S+ W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 GGLSMLTMSFSTPISLTSWADTFWWAACLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L PL +Q P + L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRMTSVLDPLTNQAAYPFLI-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G+ GAM M++HGL SSALF Y+RLH+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGITGAMILMIAHGLASSALFCLANTGYERLHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + +AN+ LP +GE +I ++F S L G +++A YSL++ Sbjct: 352 ILPLAATWWFLSNLANLALPPLPNLMGELFIITAMFNWSPWTLALTGTGTLITAGYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G S + + + RE ++ Sbjct: 412 FLMTQRGPSP-QHLLSISPFHTREHLLI 438 >gi|242624407|ref|YP_003002322.1| NADH dehydrogenase subunit 4 [Gillichthys mirabilis] gi|207081466|gb|ACI23015.1| NADH dehydrogenase subunit 4 [Gillichthys mirabilis] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/358 (37%), Positives = 201/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 L +D +S L+VLT +L P +L+S + R Y+ L+ +I AF + ++ Sbjct: 57 LALDPLSTPLLVLTCWLLPLMVLASQNHLAPEPPSRQRMYVSLLTSLQIFLILAFSATEV 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 LLFY+ FEA+LIP ++I WG E R+ A F YT GS+ +L A++++ + S Sbjct: 117 LLFYVMFEATLIPTLILITRWGNQEARLSAGTYFLFYTLAGSLPLLVALLILQNTTGSLS 176 Query: 194 IIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L + FP + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLPYANTFPLLTVGDKLW-WAGCLLAFLVKMPLYGMHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL Q P I LSL II + + QTD+K LIAYSS+ H Sbjct: 236 LLKLGGYGMMRMMIVLEPLTKQLSYPFII-LSLWGIIMTGSICLRQTDLKSLIAYSSVGH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R HTR + G+ +P Sbjct: 295 MGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHTRTMLLARGMQMLLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S T +L G +++A YSL+++ Sbjct: 355 LMTSWWFIASLANLALPPLPNLMGELMIISSLFNWSWTTILLTGAGTLITAAYSLYMF 412 >gi|215979605|ref|YP_002333111.1| NADH dehydrogenase subunit 4 [Takifugu niphobles] gi|215422555|dbj|BAG85401.1| NADH dehydrogenase subunit 4 [Takifugu niphobles] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 205/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L +S+ ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGTLSLLMLPHLSQLELTSYADKIW-WTGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILITLDPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|221145599|ref|YP_002519868.1| NADH dehydrogenase subunit 4 [Balistes vetula] gi|219806679|dbj|BAH10196.1| NADH dehydrogenase subunit 4 [Balistes vetula] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 206/364 (56%), Gaps = 16/364 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L DG+S L+VLT +L P IL+S + R Y+ L+ +I AF + Sbjct: 54 NLYLATDGLSTPLLVLTCWLLPLMILASQNHLTTEPLNRQRMYISLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEILMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL---QN 170 Query: 191 TSSIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T+ + L + P ++ ++W WI +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 TAGTLSLLTLQHTPSMCPNTWANKFW-WIGCMLAFLVKMPLYGAHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMMRMLTVLDPLTKELSYPFIV-LALWGVIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P ++ ++AN+ LP +GE ++I S+F S L G +++A YS Sbjct: 349 LQMALPLMSMWWFTASLANLALPPLPNLMGELMIITSLFSWSWWTLALTGAGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|94481759|gb|ABF21467.1| NADH dehydrogenase subunit 4 [Microgadus proximus] Length = 461 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMSRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNNTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIILDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGVGTLITAAYSLYMF 412 >gi|37962878|gb|AAR05791.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/384 (34%), Positives = 209/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMS-KFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LITHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A +V ++ N+ LP + IGE +I + F SN +L ++++ALYS LY ++ Sbjct: 356 ATWWLVASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS--LYMLII 413 Query: 433 FGVSK-CEKVQQLKDLSLRERCMV 455 K + +K RE ++ Sbjct: 414 TQRGKYTHHINNIKPSFTRENALM 437 >gi|86990371|ref|YP_492603.1| NADH dehydrogenase subunit 4 [Hemibarbus labeo] gi|84372111|gb|ABC56402.1| NADH dehydrogenase subunit 4 [Hemibarbus labeo] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRMYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYSQPLLVDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIISTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-IMKLPPFHTREHLLM 438 >gi|25057934|ref|NP_740149.1| NADH dehydrogenase subunit 4 [Salarias fasciatus] gi|25006162|dbj|BAC23770.1| NADH dehydrogenase subunit 4 [Salarias fasciatus] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 137/405 (33%), Positives = 218/405 (53%), Gaps = 20/405 (4%) Query: 31 RSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVV 90 + + ++L S I I+SL + + + + M+ Y L D +S L V Sbjct: 21 KKLWSISLSYSLIIAIYSLTL--LNNPAEVGWTMLGQY----------LATDPLSSPLTV 68 Query: 91 LTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLI 146 LT +L P IL+S + R Y+ L+ +I AF + ++++FYI FEA+LI Sbjct: 69 LTCWLLPLMILASQNHTAHDPLNRQRTYITLLTSLQMFLILAFNATELIMFYIMFEATLI 128 Query: 147 PMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF 205 P +II WG +ER+ A F YT GS+ +L A++ + T S + L + Sbjct: 129 PTLMIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLHLHNVTGTLSTLTLPLIQPLHL 188 Query: 206 S--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFL 263 + ++W +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + Sbjct: 189 TSYADKFLWAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMLRII 248 Query: 264 LPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMK 323 L L PL + P + L++ ++ A V M QTD+K LIAYSS++HMG V GI Sbjct: 249 LLLDPLTKEMSYPFMV-LAMWGLVMAGSVCMRQTDLKSLIAYSSVSHMGLVAAGILIQTP 307 Query: 324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMAN 383 G+ GA+ M++HGL SSALF Y+R H+R + GL +P ++ T+AN Sbjct: 308 WGLAGAIALMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMTLPLMTSWWLLMTLAN 367 Query: 384 MGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + LP + +GE ++I+S F S +L +++A YSL+++ Sbjct: 368 LALPPSPNLMGELMIIVSAFNWSYWTLILTGTATLITAAYSLYMF 412 >gi|50659191|ref|YP_054566.1| NADH dehydrogenase subunit 4 [Chinemys reevesi] gi|50059290|gb|AAT69366.1| NADH dehydrogenase subunit 4 [Chinemys reevesi] Length = 461 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/365 (34%), Positives = 202/365 (55%), Gaps = 11/365 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 LGVD IS L++L+ +LTP+ + ++ R ++ ++L+ +I AF + ++ Sbjct: 57 LGVDQISAPLLILSCWLTPYPPNNGQNNMTMEPTPRKRTFIFITILLQISLILAFSTTEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++F+I FE++L+P VII WGG ER+ A F YT GS+ +L A++ T S Sbjct: 117 IMFFIAFESTLLPTLVIITRWGGQMERLNAGTYFLFYTLIGSLPLLVALLTTQTFSGTLS 176 Query: 194 IIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 I L +S +P + W W+A F +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 ICTL-QLSTYPSMMNPWTHTMWWLALFTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAA 235 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR + L P P + L+L +I + + QTD+K LIAYSS+ Sbjct: 236 VLLKLGGYGIIRMTMTLAPPLKMLSYPFMM-LALWGVIMTGFICLRQTDLKSLIAYSSVG 294 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V + + GA+ M++HGL SS LF Y+R ++R + + + Sbjct: 295 HMGLVIAAALTRTEWACTGAITLMIAHGLTSSMLFCLANTNYERTNSRTLLLARNMQLLL 354 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + ++ NM LP T +GE +I+S+F SNT ++ G +L+A Y+L++ Sbjct: 355 PLMGLWWFSASLTNMALPPTINLMGELTIIVSLFNWSNTTILMTGLGTLLTAAYTLYMLI 414 Query: 430 KVVFG 434 +G Sbjct: 415 TTQWG 419 >gi|84579653|dbj|BAE72234.1| NADH dehydrogenase subunit 4 [Oryzias latipes] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 204/357 (57%), Gaps = 14/357 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + + N + I+ LV L+ ++ AF + +M Sbjct: 57 IATDPLSTPLLVLTCWLLPLMILASQNHMAKEPINRQRTYISLLVSLQIFLVLAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL--QNSTGS 174 Query: 194 IIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + L P + ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSFLTTQFFPPLQLHTEASKFW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL Q P I L+L ++ + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRIIIILDPLTKQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + T+AN+ LP +GE ++I S+F SN +L G +++A YSL Sbjct: 353 LPLLATWWFLVTIANLALPPLPNLMGELMIITSLFNWSNWTLLLTGAGTLITASYSL 409 >gi|28894790|ref|NP_795829.1| NADH dehydrogenase subunit 4 [Retropinna retropinna] gi|28804950|dbj|BAC58234.1| NADH dehydrogenase subunit 4 [Retropinna retropinna] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/363 (36%), Positives = 205/363 (56%), Gaps = 14/363 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VL+ +L P IL+S I R Y+ L+ +I AF + Sbjct: 54 SLYLATDPLSTPLLVLSCWLLPLMILASQNHICPEPIGRQRTYISLLASLQMFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQADTG 173 Query: 191 TSSIIDL-YAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S+I + YA P + W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSLITIQYAQ---PLGLSSWADKLWWMGCLMAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R +L L PL+ + P I L+L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMLMLDPLSKELAYPFIV-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G G + M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAGGILIQTPWGFTGVIILMIAHGLASSALFCLANTTYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + +AN+ LP +GE ++I S+F S VL G +++A YSL Sbjct: 350 QMILPLMATWWFLANLANLALPPLPNLMGELMIITSLFNWSQWTLVLTGVGTLITAGYSL 409 Query: 426 WLY 428 +L+ Sbjct: 410 YLF 412 >gi|37620612|gb|AAQ95115.1| NADH dehydrogenase subunit 4 [Monachus schauinslandi] Length = 459 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/380 (33%), Positives = 205/380 (53%), Gaps = 9/380 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGMYFLFYTLVGSLPLLVALLSIQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++ L+A +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 178 MLQLWAQPTLNSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + L PL S P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITMLLNPLTSSTAYPFMM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 297 VIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQVLLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP T IGE V+M+ F SN +L ++++A+YSL++ Sbjct: 357 TWWLMASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITAMYSLYMLITTQR 416 Query: 434 GVSKCEKVQQLKDLSLRERC 453 G ++ +K RE Sbjct: 417 G-KYTHHIKNIKPSFTRENA 435 >gi|45388025|ref|NP_991011.1| NADH dehydrogenase subunit 4 [Megalops cyprinoides] gi|45259441|dbj|BAD12295.1| NADH dehydrogenase subunit 4 [Megalops cyprinoides] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L++++I AF + Sbjct: 54 NTYMATDPLSTPLLVLTCWLLPLMILASQNHTMPEPTNRQRTYLTLLASLQALLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLIL--QKD 171 Query: 191 T---SSIIDLYAMSKFPFSIQYWMWIA-FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S ++ Y + P S MW A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLLTQYTNTTMPNSWGSKMWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L P+ + P I L+ II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMTAMLTPMTKELAYPFIA-LATWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R+H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERIHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+ S +L G +++A YSL+ Sbjct: 351 MILPLMAAWWFIMNLANLALPPLPNLMGELMIITSLMNWSLWTILLTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTP-NHIMALEPSHTREHLLM 438 >gi|5835271|ref|NP_008299.1|ND4_10885 NADH dehydrogenase subunit 4 [Oncorhynchus mykiss] gi|1352571|sp|P11631|NU4M_ONCMY RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|463163|gb|AAB03356.1| NADH dehydrogenase subunit 4 [Oncorhynchus mykiss] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 202/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ + L++ ++ AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQSHLSPEPLNRQRAYISLLVSLQTFLVLAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDNGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMFTLQYTQ--PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 293 GHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P V ++AN+ LP +GE ++I S+F S +L G +++A YSL+L+ Sbjct: 353 LPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLYLF 412 >gi|299823686|ref|YP_003734481.1| NADH dehydrogenase subunit 4 [Thryssa baelama] gi|299758093|dbj|BAJ09960.1| NADH dehydrogenase subunit 4 [Thryssa baelama] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 216/399 (54%), Gaps = 17/399 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK-SIQE---NFREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S ++ E R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSSPLLVLTCWLLPLMILASQNHTLAEPVPRQRMYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLAL--QTATG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ L PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMLTLSFNQPFGLVSWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L PL P I L+L I+ + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRITPILDPLTKDLAYPFII-LALWGIVMTGTICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 293 SHMGLVASGILVQTPWGMTGAIILMIAHGLTSSALFCLANTSYERTHSRTMALARGMQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S VL G +++A YSL+++ Sbjct: 353 FPLTATWWFIANLANLALPPLPNLMGEMMIITTMFNWSPWSIVLTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV----YPIAVLTV 463 G + + L RE ++ PI +LT+ Sbjct: 413 LMTQRGQTPTH-ITTLPPYHTREHLLISLHLIPIVLLTL 450 >gi|330371469|gb|AEC12722.1| NADH dehydrogenase subunit 4 [Hypselobarbus kurali] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P I++S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMIMASQNHISPEPINRQRSYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTTTWWFLANLANLALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L+ RE ++ Sbjct: 413 LMSQRG-QVPNHITGLQPFHTREHLLM 438 >gi|89257298|ref|YP_514587.1| NADH dehydrogenase subunit 4 [Kneria sp. SL-2004] gi|88759296|dbj|BAE79977.1| NADH dehydrogenase subunit 4 [Kneria sp. SL-2004] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 214/389 (55%), Gaps = 11/389 (2%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFL 130 +Y++ D +S L+VLT +L P IL+S + N + I+ L L+ +I AF Sbjct: 53 ANYYMATDPLSTPLLVLTCWLLPMMILASQNHMNSEPINRQRLFISLLTSLQLFLIMAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++ +FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E Sbjct: 113 ATEIFMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQTET 172 Query: 190 KTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ L + + +S + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 GTLSMLTLQFSKPLDLYSWSSKIW-WTGCMIAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L P + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMSIILDPATKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVVGGILIQTPWGFTGAIALMIAHGLVSSALFCLANTSYERTHSRTLILTRGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+ Sbjct: 351 MILPLSATWWFLMNLANLALPPMPNLMGELMIITAMFNWSPWTIILTGAGTLITACYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTPIHMI-NLPPTHTREHLLM 438 >gi|29570763|ref|NP_818926.1| NADH dehydrogenase subunit 4 [Gonorynchus greyi] gi|29501174|dbj|BAC67529.1| NADH dehydrogenase subunit 4 [Gonorynchus greyi] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 206/361 (57%), Gaps = 16/361 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 L D +S L++LT +L P IL+S I R Y+ + L++ +I AF + ++ Sbjct: 57 LATDPLSTPLLILTCWLLPLMILASQNHIAPEPLSRQRTYISLLVSLQAFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+L+P VII WG +ER+ A F YT GS+ +L A++++ KT+ Sbjct: 117 IMFYVMFEATLVPTLVIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL---HKTTG 173 Query: 194 IIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + ++A+ P + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSVHALGLLPQLTLTSYGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRVMVMLDPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILVQTPWGLTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++AN+ LP +GE ++I ++F S +L G +++A YSL+L Sbjct: 352 VLPLTAAWWFGASLANLALPPLPNLMGELMIITTLFAWSPWTLILTGAGTLITAGYSLYL 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|119511750|ref|ZP_01630853.1| NADH dehydrogenase subunit M [Nodularia spumigena CCY9414] gi|119463587|gb|EAW44521.1| NADH dehydrogenase subunit M [Nodularia spumigena CCY9414] Length = 500 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 164/477 (34%), Positives = 258/477 (54%), Gaps = 23/477 (4%) Query: 6 LSIVTFLPFLGVFVILF--SSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQ 63 LS + ++P + +I F ++ R +AL +S I ++LF+ FD Q Sbjct: 2 LSFLIWIPIVSAVIIGFLPGKFIAASRIRL--IALIVSGIVLFWNLFILLKFDISNPGMQ 59 Query: 64 MIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLE 122 E W + SY +GVDG+SIL+++L + LT I SS KS E R + L++ Sbjct: 60 FQENIPWNETLGLSYQIGVDGLSILMLILNSLLTWIAIYSSDKS-TERPRLFYSLILLVS 118 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 V GAFL+ ++LLF++F+E LIP +++I +WGG +R YA KF +YT +L Sbjct: 119 GGVAGAFLAENLLLFFLFYELELIPFYLLISIWGGEKRAYAGIKFLIYTAVSGALILATF 178 Query: 183 VVMCW-EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + M + TS D + +Q + F IKIP+ PFHTWLP+A+V+A Sbjct: 179 LSMVFLTGSTSFAFDAVSTQTLSAGLQLLLLTGIIIGFGIKIPLVPFHTWLPDAYVEASA 238 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 ++ L G++ K+G YG +RF + +FP A AP + I+ IY +++++ QTDIK+ Sbjct: 239 PIAILLGGVLAKLGTYGLLRFGMGMFPEAWSVVAPTLAIWGAISAIYGAVIAIAQTDIKR 298 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 ++AYSSI HMGYV + S + GA+ QM SHGL+ + LF VGVI ++ TR++ Sbjct: 299 MVAYSSIGHMGYVLLASASSTSLALVGAVAQMFSHGLILAILFHLVGVIEAKVGTRELDK 358 Query: 362 YGGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS------NTVAVL 412 GL + +P + ++++ MA+ G+PG +GF+ EF+ VFQ S T+ + Sbjct: 359 LNGLMSPIRGLPFISALLVLSGMASAGIPGLTGFVAEFI----VFQGSFSAFPLPTLLCV 414 Query: 413 ASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 AS G L+A+Y + L + FG + + E+ +AVL +F GI P Sbjct: 415 ASSG--LTAVYFVILLNRTCFG-KLDNNLAYYPKVVWAEKIPAIVLAVLIIFLGIQP 468 >gi|12583912|gb|AAG59673.1| NADH dehydrogenase subunit 4 [Muntiacus reevesi] Length = 459 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 200/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++L +L P + +S + + + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLILAMWLLPLMLTASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAAELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|5835872|ref|NP_008643.1|ND4_15069 NADH dehydrogenase subunit 4 [Sus scrofa] gi|20455496|sp|O79881|NU4M_PIG RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|4958961|gb|AAD34194.1|AF034253_10 NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 207/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINNIKASFTRENALM 437 >gi|254763708|gb|ACT80239.1| NADH dehydrogenase subunit 4 [Cynoglossus semilaevis] Length = 457 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 9/363 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L++LT +L P IL+S + Q R Y+ + L+ +I AF S + Sbjct: 56 YMATDTLSTPLIILTCWLLPLMILASQDHMKTESQTRQRLYITLLIFLQLFLISAFSSTE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG ER+ A YT S+ +L A++++ + T Sbjct: 116 LIMFYIMFEATLIPTLMIITRWGNQLERLSAGTYLLFYTLISSLPLLVALLMI--QTNTG 173 Query: 193 SIIDLYAMSKFPFSIQY-WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 S+ A F Q+ ++W+A F +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 174 SLSLTSAQFYFSLIPQHNFLWLACFLAFLVKMPLYGLHLWLPKAHVEAPIAGSMILAAVL 233 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + P++ P I L+L +I LV + Q D+K LIAYSS+ HM Sbjct: 234 LKLGGYGMMRISTIVDPISKNMTYPFIT-LALWGVIMTGLVCLQQMDLKSLIAYSSVGHM 292 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V G+ + G GA+ M++HGL SSALF + Y+R H+R ++ GL P Sbjct: 293 GLVVGGVLTQTSWGYSGALILMIAHGLTSSALFCLANINYERTHSRIMYLTRGLQIIFPL 352 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A+ + FT+AN+ LP +GE +I+ +F S + G +++A YSL ++ Sbjct: 353 MAIWWLSFTLANLALPPLPNMMGELTIIVCMFNWSWWTIIFTGLGTLITAAYSLHMFTTT 412 Query: 432 VFG 434 G Sbjct: 413 QRG 415 >gi|326536017|ref|YP_004300455.1| NADH dehydrogenase subunit 4 [Hypomesus nipponensis] gi|311788433|gb|ADQ12820.1| NADH dehydrogenase subunit 4 [Hypomesus nipponensis] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 204/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S I R Y+ L+ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLSCWLLPLMILASQNHISPEPINRQRAYISLMASLQMFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ E Sbjct: 114 TEIIMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNETG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+I L P ++ W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSLITLQYTQ--PLNLSTWGDKMWWVGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R +L L PL+ + P I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMLMLDPLSKELAYPFIV-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTTYERTHSRTMLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + +AN+ LP +GE ++I ++F S ++ G +++A YSL+ Sbjct: 351 MVLPLMTTWWFIANLANLALPPLPNLMGELMIITAMFNWSYWTLLITGVGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|288909005|dbj|BAI77244.1| NADH dehydrogenase subunit 4 [Lasiognathus sp. NMMBP 9030] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQSHMAPEPLNRQRTYITLLTSLQLFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP V+I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLVLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTG 173 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + P ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYATPIPLITYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I F +L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLVVLEPLTKELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVIGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S+ VL G +++A YSL++ Sbjct: 352 LLPLMTSWWFLASLANLALPPLPNLMGELMILTSLFNWSHPTIVLTGAGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|108767362|ref|YP_636092.1| NADH dehydrogenase subunit 4 [Chondrostoma lemmingii] gi|105873621|gb|ABF74848.1| NADH dehydrogenase subunit 4 [Chondrostoma lemmingii] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 209/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPASRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYAQPLLTDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLASAWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + V +L RE ++ Sbjct: 413 LMSQRGPAPAH-VMKLPPFHTREHLLM 438 >gi|107991027|ref|YP_626578.1| NADH dehydrogenase subunit 4 [Hynobius leechii] gi|51891114|gb|AAU12941.1| NADH dehydrogenase subunit 4 [Hynobius leechii] gi|84371543|gb|ABC55991.1| NADH dehydrogenase subunit 4 [Hynobius leechii] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 209/359 (58%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +LG+D +S L++LT +L P IL+S ++ N R Y+ ++L++ +I AF + + Sbjct: 55 YLGLDPLSSPLLILTCWLLPMMILASQNHLKNNPVNRQRMYISMMIILQASLILAFAATE 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 115 IIMFYIAFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLILQSYSGSL 174 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+ L S +S + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 SLFLLELTSPMQLMMYSDKIW-WAACLLAFMVKMPLYGMHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R + L PL+ + P I L+L +I ++ M QTD+K LIAYSS++ Sbjct: 234 VLLKLGGYGILRISIMLTPLSKELSYPFII-LALWGVIMTGMICMRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GA+ M+SHGL+SSALF + Y+R H+R + G + Sbjct: 293 HMGLVIAAALIQTPWSFSGAIILMISHGLISSALFCLANMNYERTHSRTLLLMRGAQVML 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A ++ ++NM LP + GE +++S+F SN ++ G +++A Y+L++Y Sbjct: 353 PLMATWWLLTNLSNMALPPSLNLWGELTIMVSLFNWSNWTILITGTGTLITASYTLYMY 411 >gi|237642064|ref|YP_002894726.1| NADH dehydrogenase subunit 4 [Moschus berezovskii] gi|153799699|gb|ABS50579.1| NADH dehydrogenase subunit 4 [Moschus berezovskii] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQYHLSKENLTRKKLFITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPMPNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L P +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITMFLNP-TTEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|56541768|emb|CAI30266.1| hypothetical protein [Pongo abelii] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/383 (34%), Positives = 209/383 (54%), Gaps = 13/383 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWK--SIQENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S S + R+ Y+ + L+ +I F + ++++F Sbjct: 60 DPLSTPLLMLTTWLLPLMIMASQHHLSNEPPLRKKLYLTMLISLQISLIMTFTAAELIMF 119 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE +LIP VII WG ER+ A F YT GS+ +L A++ + +I+ Sbjct: 120 YILFETTLIPTLVIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIHTHNTLGSLNIVL 179 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 180 LTLTARE--LTDSWSNSLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 237 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 KLGGYGMMRLIPILNPLTKHMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 296 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 297 LVVAAILIQTPWSFTGAITLMIAHGLTSSLLFCLANPNYERTHSRIMILSQGLQTLLPLM 356 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A+ ++ ++ N+ LP T +GE V+M++F SN +L ++++ LYSL+++ Sbjct: 357 ALWWLLASLTNLALPPTINLLGELSVLMAMFSWSNITILLTGLNMLITTLYSLYMFTTTQ 416 Query: 433 FGVSKCEKVQQLKDLSLRERCMV 455 G + + +K RE ++ Sbjct: 417 RG-TPTHHINNMKPSFTRENTLM 438 >gi|296940233|ref|YP_003667904.1| NADH dehydrogenase subunit 4 [Brookesia decaryi] gi|296531220|dbj|BAJ08069.1| NADH dehydrogenase subunit 4 [Brookesia decaryi] Length = 450 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/362 (34%), Positives = 206/362 (56%), Gaps = 10/362 (2%) Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIG 127 + + + + +D IS L+VL+ +L P +L+S S R +++ +L+S ++ Sbjct: 48 NKYQNLYTTIDQISAPLLVLSYWLLPIMVLASQNHLKYSTSMQKRVFLMCLAMLQSFLVM 107 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 A S ++LLF++ FEA+LIP +II WG ER+ A F LYT S+ +L A+++ Sbjct: 108 ALSSTNLLLFFLMFEATLIPTMIIITRWGNQKERLTAGMYFMLYTLVTSMPLLIALLINN 167 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ S+I L++ P + MW+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 168 YKMLHSNI--LFSSMLNP-ELNMTMWLACTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 224 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R L+ L + ++ LSL +I ASL+ + Q D+K LIAYS Sbjct: 225 LAAILLKLGGYGMMRISPMLYQLEKLHLPFIV--LSLWGMIMASLICLRQPDLKSLIAYS 282 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG + + S + GAM M++HG+ SS LF ++Y+R +TR + G+ Sbjct: 283 SVSHMGLIVMATMIQTPSSLTGAMMLMVAHGITSSMLFCLANIMYERTNTRTLIMMQGMQ 342 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 MP + + NM +P T GE ++IM+ F S ++ S ++A+YS+ Sbjct: 343 IAMPLMTAFWFLANLTNMAIPPTINLFGEIMIIMTTFNWSAPTLIITSLTAAITAIYSMH 402 Query: 427 LY 428 ++ Sbjct: 403 MF 404 >gi|221145431|ref|YP_002519647.1| NADH dehydrogenase subunit 4 [Canthidermis maculata] gi|219806847|dbj|BAH10222.1| NADH dehydrogenase subunit 4 [Canthidermis maculata] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/361 (37%), Positives = 210/361 (58%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + +L DG+S L+VLT +L P IL+S + + N + I+ L L+ +I AF + Sbjct: 54 NLYLATDGLSTPLLVLTCWLLPLMILASQNHLTQEPHNRQRMYISLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEILMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTAG 173 Query: 191 TSSIIDL-YAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + S P ++ +W W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLALQHTTSTHPNTWASTFW-WLGCMLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L L P+ + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLTILDPMTKELSYPFIT-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A+ + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMAMWWFLASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|156186515|gb|ABU55500.1| NADH dehydrogenase subunit 4 [Zacco platypus] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHVNPEPMARQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLSKELVYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A+ V +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 VIFPLTAIWWFVANLANLALPPLPNLMGELMIITTLFNWSPWTITLTGAGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + +L RE ++ Sbjct: 411 MFLMSQRGPTP-NHMMKLPPFHTREHLLM 438 >gi|38639892|ref|NP_943613.1| NADH dehydrogenase subunit 4 [Erpetoichthys calabaricus] gi|38304767|gb|AAR16112.1| NADH dehydrogenase subunit 4 [Erpetoichthys calabaricus] Length = 461 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S+ + D IS L++LT +L P IL+S I R Y+ L+ ++I AF + Sbjct: 54 SFTMATDMISTPLIILTCWLLPLMILASQNHITTEPINRQRTYITLLTSLQLLLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 114 TEVILFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLSLYKSTG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + S+I ++ + S W +W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 SLSMISMFMNNNI--SPDTWTNSLLWAACLMAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR L L P A++ A L++ II + M Q+D+K LIAYS Sbjct: 232 LAAVLLKLGGYGMIRMTLILEP-ATKSLAYPFIILAIWGIIMTGSICMRQSDMKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R ++R + G+ Sbjct: 291 SVSHMGLVASGILIQTAWGFTGAIILMIAHGLTSSALFCLANTTYERTNSRTLLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + ++ NM LP +GE ++++S+F S+ +L G +++A YSL+ Sbjct: 351 IILPLMATWWFIMSLMNMALPPLPNLMGELIIMVSLFNWSSWTILLTGTGTLITATYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 LY G + + + ++ RE ++ Sbjct: 411 LYLSSQRGPAP-DNILLIEPTHTREHLLL 438 >gi|67078845|gb|AAY64445.1| NADH dehydrogenase subunit 4 [Pelodiscus sinensis] Length = 461 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 214/386 (55%), Gaps = 14/386 (3%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVI 126 I F +++L + S L++L+ +LTP IL+S + R ++I ++L+ ++I Sbjct: 49 IMNFSNHNLQQNQTSTPLIILSCWLTPLMILASQNHLSTEPLSRKRTFIITTIILQMLLI 108 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVM 185 F + D+++F++ FEA+LIP ++I WG ER+ A F YT GS+ +L A++ + Sbjct: 109 MTFSTTDLIMFFVLFEATLIPTLMMITRWGNQMERLNAGTYFLFYTLMGSLPLLVALLSL 168 Query: 186 CWEKKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + SI+ + M K ++ W+ +A +F IK+P++ H WLP AHV+AP A Sbjct: 169 YSNTNSLSILTMQLSPTMLKNTWTNSMWL-LAALTAFMIKMPLYGLHLWLPKAHVEAPIA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA I+LK+GGYG IR + L+ + P + L+L II SL+ + QTD+K L Sbjct: 228 GSMILAAILLKLGGYGIIRIMSTTNFLSKTPYYPFMI-LALWGIIMTSLICLRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYS ++HMG VT + + GA+ M++HGL SS LF R+H+R + Sbjct: 287 IAYSPVSHMGLVTAATLTQTEWAYTGAITLMIAHGLTSSLLFCLANTKLRRIHSRTLLLT 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 + +P ++ ++ NM LP T +GE +I S+F SNT ++ G +++A Sbjct: 347 QNMQLLLPLMGTWWLLASLTNMALPPTINLMGELTIITSLFNWSNTTIIITGLGTLITAT 406 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLS 448 Y+L ++ +G E Q +K ++ Sbjct: 407 YTLHMFSSTQWG----ELPQHIKIMT 428 >gi|219524184|ref|YP_002456330.1| NADH dehydrogenase subunit 4 [Sacalia quadriocellata] gi|118244443|gb|ABK53943.1| NADH dehydrogenase subunit 4 [Sacalia quadriocellata] Length = 447 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 123/391 (31%), Positives = 213/391 (54%), Gaps = 23/391 (5%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI--QENFREYMIAFLVLESMVIGAFLS 131 F +Y+L VD IS ++L+ +LTP I++ ++ + R+ L ++ +F + Sbjct: 51 FSNYYLAVDQISAPFLILSCWLTPMMIMAGQNNLITEPTSRK-------LTNLTSTSFFN 103 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++++F+I FE++L+P VII WGG ER+ A F YT GS+ +L A++ + Sbjct: 104 MELIMFFIAFESTLLPTLVIITRWGGQMERLNAGTYFLFYTLIGSLPLLVALL----STQ 159 Query: 191 TSSIIDLYAMS------KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T S + +Y + P++ W W+A F +F IK+P++ H WLP AHV+AP AGS Sbjct: 160 TYSTLSIYMLQLSDYYKTNPWACTMW-WLALFTAFMIKMPLYGLHLWLPKAHVEAPVAGS 218 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L P ++ + L+L +I + + Q D+K LIA Sbjct: 219 MILAAVLLKLGGYGIIRMTMTLAP-PLKFLSYPFMMLALWGVIMTGFICLCQMDLKSLIA 277 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V + + GA+ M++HGL SS LF Y+R ++R + Sbjct: 278 YSSVSHMGLVIAATLTKTEWACTGAITLMIAHGLTSSMLFCLANTNYERTNSRTLILARN 337 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ANM LP T +GE +I+S+F S+T ++ G +++A Y+ Sbjct: 338 MQLLLPLMGLWWFSASLANMALPPTINLMGELTIIVSLFNWSDTTILMTGLGTLMTAAYT 397 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ +G + + + RE ++ Sbjct: 398 LYMLITTQWGETP-SHTKTISPTHTREHLLM 427 >gi|116014320|ref|YP_788139.1| NADH dehydrogenase subunit 4 [Verasper moseri] gi|115498279|gb|ABI98722.1| NADH dehydrogenase subunit 4 [Verasper moseri] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/358 (36%), Positives = 202/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K R Y+ L+ +I AF + ++ Sbjct: 57 MATDSLSTPLLVLTCWLLPLMILASQKHTTSEPLNRQRMYITLLASLQFFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 VMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTSGTLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L+ + S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLHYTNPLALSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P I F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMTMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQSPWGLTGALTLMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQVALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE ++I S+F S VL G +++A YSL+++ Sbjct: 355 LMATWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTLVLTGGGTLITAGYSLYMF 412 >gi|6648643|gb|AAF21270.1| NADH ubiquinone oxidoreductase subunit 4 [Ctenopharyngodon idella] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 +++K+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLMKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMTQRGPTPIH-ITKLPPFHTREHLLM 438 >gi|168481214|gb|ACA24720.1| NADH dehydrogenase subunit 4 [Ursus arctos] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/391 (34%), Positives = 207/391 (52%), Gaps = 31/391 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLVLLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLHT--QNNLGSLN 175 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 L +QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 176 FLL--------MQYWTQPLPNSWSSMFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL S P + LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLSPLTSSMAYPFMM-LSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSLLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T IGE V+++ F SN L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLSLPPTINLIGELFVVVATFSWSNITITLMGTNIIITALY 406 Query: 424 SLWLYRKVVFGVSKC-EKVQQLKDLSLRERC 453 S LY + KC + V+ +K RE Sbjct: 407 S--LYMLITTQRGKCTDHVKSIKPSFTRENA 435 >gi|32402535|ref|NP_861485.1| NADH dehydrogenase subunit 4 [Procavia capensis] gi|32187990|dbj|BAC78408.1| NADH dehydrogenase subunit 4 [Procavia capensis] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 201/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S + + Y+ + L+ ++I F + ++++F Sbjct: 59 DTLSTPLLILTTWLLPLMLLASQHHLMNEPTTRKKTYITMLISLQLLLIITFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-I 195 YI FE++LIP ++I WG SER+ A F YT GS+ +L ++ M + +I I Sbjct: 119 YIMFESTLIPTMIVITRWGNQSERLNAGLYFLFYTLLGSLPLLITLLHMQNTLGSLNILI 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 Y + P S W MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 179 SPYYTNNLPNS---WSTNLMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + LS+ ++ S + M QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITIFLDPLTKSMAYPFLL-LSMWGMLMTSSICMRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIVAIMIQTPWSYMGATTLMIAHGLTSSLLFCLANTNYERTHSRTMILTRGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE LVIMS F SNT +L ++++A+Y+L++ Sbjct: 355 MATWWTLASLTNLALPPSINLIGELLVIMSTFSWSNTTLILTGLNMLITAMYTLYMLTMT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|192293746|ref|YP_001994310.1| NADH dehydrogenase subunit 4 [Maulisia mauli] gi|190715166|dbj|BAG49406.1| NADH dehydrogenase subunit 4 [Maulisia mauli] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 140/388 (36%), Positives = 211/388 (54%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPANRQRMYISLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLTGSLPLLVALLLLQNDTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II V + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLDPLTKEMAYPFIV-LALWGIIMTGSVCLRQTDLKLLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R HTR + GL Sbjct: 292 VGHMGLVAGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTSYERTHTRTMALARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L Sbjct: 352 LFPLTAVWWFTANLANLALPPLPNLMGEIMIISTMFNWSPWTLALTGIGTLITAGYSLYL 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + V L RE ++ Sbjct: 412 FLMTQRGPAPVHMV-GLTSYHTREHLLM 438 >gi|14587479|gb|AAK70522.1|AF224617_4 NADH dehydrogenase subunit 4 [Cheirogaleus major] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 213/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLMKETWTRKKSYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALI---YTQNSLGSLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + M+ + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 MATMTLCNQEMSNSWSNGLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P+ ++Y A + L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPM-TKYLAYPLLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQSFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP + IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELLVIMASFSWSNITIILTGLNMLITALYSLYMLTVT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G L RE + + P+ +LT+ Sbjct: 415 QRG-KPTYHTHNLNPSLTRENTLMSMHMLPVILLTL 449 >gi|192293760|ref|YP_001994323.1| NADH dehydrogenase subunit 4 [Narcetes erimelas] gi|190715180|dbj|BAG49419.1| NADH dehydrogenase subunit 4 [Narcetes erimelas] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 207/374 (55%), Gaps = 10/374 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLLILASQNHISPEPISRQRMYISLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLDPLSKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L Sbjct: 352 LFPLTAVWWFTANLANLALPPLPNLMGEIMIITTMFNWSPWTLALTGLGTLVTAGYSLYL 411 Query: 428 YRKVVFGVSKCEKV 441 + G + + Sbjct: 412 FLMTQRGPAPAHMI 425 >gi|145208219|gb|ABP38008.1| NADH dehydrogenase subunit 4 [Bos grunniens] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPMHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGMNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|147744500|ref|YP_001218800.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|145208233|gb|ABP38021.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|145208247|gb|ABP38034.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532467|gb|ACU81396.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532481|gb|ACU81409.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532495|gb|ACU81422.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532551|gb|ACU81474.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532565|gb|ACU81487.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532579|gb|ACU81500.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532593|gb|ACU81513.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532635|gb|ACU81552.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532649|gb|ACU81565.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532705|gb|ACU81617.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532719|gb|ACU81630.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532733|gb|ACU81643.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532747|gb|ACU81656.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532775|gb|ACU81682.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532803|gb|ACU81708.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532817|gb|ACU81721.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532831|gb|ACU81734.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532845|gb|ACU81747.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532859|gb|ACU81760.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532873|gb|ACU81773.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532887|gb|ACU81786.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532901|gb|ACU81799.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532929|gb|ACU81825.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532943|gb|ACU81838.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532957|gb|ACU81851.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532971|gb|ACU81864.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532985|gb|ACU81877.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533013|gb|ACU81903.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533027|gb|ACU81916.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533069|gb|ACU81955.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533083|gb|ACU81968.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533139|gb|ACU82020.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533153|gb|ACU82033.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533181|gb|ACU82059.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533195|gb|ACU82072.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533209|gb|ACU82085.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533237|gb|ACU82111.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533251|gb|ACU82124.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533293|gb|ACU82163.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533307|gb|ACU82176.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533321|gb|ACU82189.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533335|gb|ACU82202.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533349|gb|ACU82215.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533363|gb|ACU82228.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533391|gb|ACU82254.1| NADH dehydrogenase subunit 4 [Bos grunniens] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPMHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGMNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|94981330|gb|ABF49558.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/392 (34%), Positives = 208/392 (53%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLVLLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ERI A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERINAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|238625892|gb|ACR48218.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 207/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLIITQRG-KHTHHINNIKPSFTRENALM 437 >gi|321398298|emb|CBX20889.1| nadh dehydrogenase subunit 4 [Castor fiber] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 121/357 (33%), Positives = 204/357 (57%), Gaps = 14/357 (3%) Query: 88 LVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 L++LT +L P I++S + + + + Y+ ++L++++I F + +++LFYI FEA Sbjct: 65 LLILTAWLLPLMIMASQQHMNKEPVGRKKMYITMLVLLQTLLIMTFTATELILFYILFEA 124 Query: 144 SLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK 202 +LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++L+ ++ Sbjct: 125 TLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYL---QBSLGSLNLHILNN 181 Query: 203 FPFSIQY-W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 + + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGY Sbjct: 182 YSEQLNLSWSNDLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGY 241 Query: 258 GCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 G +R + L P+ + P + LSL ++ S + + QTD+K LIAYSS++HM V + Sbjct: 242 GMMRITVLLSPITNHMMYPFML-LSLWGMLMTSSICLRQTDLKSLIAYSSVSHMALVIVA 300 Query: 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMM 377 I GA M++HGL SS LF Y+R+H+R + GL +P A+ + Sbjct: 301 ILIQSPWSFMGATALMVAHGLTSSVLFCLANTNYERVHSRTMLLARGLQTMLPLMALWWL 360 Query: 378 VFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ N+ LP T IGE ++I S F SN +L +++ALY+L++ G Sbjct: 361 TASLTNLALPPTINLIGELMIIASSFSWSNFTILLMGANTLITALYTLYMLTTTQRG 417 >gi|317097290|ref|YP_004123501.1| NADH dehydrogenase subunit 4 [Gobiobotia macrocephala] gi|223951266|gb|ACN29560.1| NADH dehydrogenase subunit 4 [Gobiobotia macrocephala] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPVNRQRLYITLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLML--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKDLIYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGEIMIITTLFSWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-IMKLPPFHTREHLLM 438 >gi|240266448|ref|YP_002970800.1| NADH dehydrogenase subunit 4 [Cynoglossus semilaevis] gi|164519774|gb|ABY59943.1| NADH dehydrogenase subunit 4 [Cynoglossus semilaevis] Length = 457 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 203/363 (55%), Gaps = 9/363 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L++LT +L P IL+S + Q R Y+ + L+ +I AF S + Sbjct: 56 YMATDTLSTPLIILTCWLLPLMILASQDHMKTESQTRQRLYITLLIFLQLFLISAFSSTE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG ER+ A YT S+ +L A++++ + T Sbjct: 116 LIMFYIMFEATLIPTLMIITRWGNQLERLSAGTYLLFYTLISSLPLLVALLMI--QTNTG 173 Query: 193 SIIDLYAMSKFPFSIQY-WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 S+ A F Q+ ++W+A F +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 174 SLSLTSAQFYFSLIPQHNFLWLACFLAFLVKMPLYGLHLWLPKAHVEAPIAGSMILAAVL 233 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG R + P++ P I L+L +I LV + Q D+K LIAYSS+ HM Sbjct: 234 LKLGGYGMTRISTIVDPISKNMTYPFIT-LALWGVIMTGLVCLQQMDLKSLIAYSSVGHM 292 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V G+ + G GA+ M++HGL SSALF + Y+R H+R ++ GL P Sbjct: 293 GLVVGGVLTQTSWGYSGALILMIAHGLTSSALFCLANINYERTHSRIMYLTRGLQIIFPL 352 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A+ + FT+AN+ LP +GE +I+ +F S + G +++A YSL ++ Sbjct: 353 MAIWWLSFTLANLALPPLPNMMGELTIIVCMFNWSWWTIIFTGLGTLITAAYSLHMFTTT 412 Query: 432 VFG 434 G Sbjct: 413 QRG 415 >gi|84488604|ref|YP_448942.1| NADH dehydrogenase subunit 4 [Rangifer tarandus] gi|84095027|dbj|BAE66696.1| NADH dehydrogenase subunit 4 [Rangifer tarandus] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 203/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLTRKKLYITMLILLQLCLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V ++ T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVY--FQNITGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F + +P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPLPNSWSNVFMWLACMMAFMVAMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRVTMFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYSLYM 410 >gi|283099313|ref|YP_003359446.1| NADH dehydrogenase subunit 4 [Rhodeus suigensis] gi|146142410|gb|ABQ01669.1| NADH dehydrogenase subunit 4 [Rhodeus suigensis] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N R I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRRRLYISLLASLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL--QQSAG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLLIQYAQPLMLHSWSDKLWWAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELAYPFIV-LALWGVITTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V I G GA+ M++HGL+SS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGAILIQTPWGFSGAITLMVAHGLISSMLFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F + L G +++A YSL+++ Sbjct: 353 FPLAAVWWFIANLANLALPPLPNLMGELMIITALFNWAPATIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMTQRGPTP-NHIMKLSPTHTREHLLM 438 >gi|270267687|ref|YP_003331363.1| NADH dehydrogenase subunit 4 [Conocara macropterum] gi|269994232|dbj|BAI50230.1| NADH dehydrogenase subunit 4 [Conocara macropterum] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 141/398 (35%), Positives = 215/398 (54%), Gaps = 15/398 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPVNRQRMYISLLASLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIILDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P AV +AN+ LP +GE ++I ++F S +L G +++A YSL+L+ Sbjct: 354 PLTAVWWFTANLANLALPPLPNLMGEIMIIATMFNWSPWTLILTGLGTLITASYSLYLFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 G + + L RE ++ PI +LT Sbjct: 414 MTQRGPTPAHMI-GLTPYHTREHLLMTLHLIPIILLTT 450 >gi|110432994|gb|ABG74215.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|110432999|gb|ABG74219.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|110433004|gb|ABG74223.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|110433009|gb|ABG74227.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|110433014|gb|ABG74231.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|110433019|gb|ABG74235.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|110433024|gb|ABG74239.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|110433029|gb|ABG74243.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/403 (33%), Positives = 211/403 (52%), Gaps = 33/403 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLLPLTIMASQYHLSKEPSERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SSIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMNYWFQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L PL +++ A + L +I SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITLILSPL-TKFMAYPFLMMCLWGMIMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM VT+ I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVTVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SNT +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNTTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 L + G S + RE + ++P+ +LT+ Sbjct: 408 LHMLAMTQRGKS-LYHMHNFNPSLTRENTLMSMHIFPLLMLTL 449 >gi|321398311|emb|CBX20901.1| nadh dehydrogenase subunit 4 [Castor fiber] gi|321398324|emb|CBX20913.1| nadh dehydrogenase subunit 4 [Castor fiber] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 121/357 (33%), Positives = 204/357 (57%), Gaps = 14/357 (3%) Query: 88 LVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 L++LT +L P I++S + + + + Y+ ++L++++I F + +++LFYI FEA Sbjct: 65 LLILTAWLLPLMIMASQQHMNKEPVGRKKMYITMLVLLQTLLIMTFTATELILFYILFEA 124 Query: 144 SLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK 202 +LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++L+ ++ Sbjct: 125 TLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYL---QNSLGSLNLHILNN 181 Query: 203 FPFSIQY-W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 + + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGY Sbjct: 182 YSEQLNLSWSNDLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGY 241 Query: 258 GCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 G +R + L P+ + P + LSL ++ S + + QTD+K LIAYSS++HM V + Sbjct: 242 GMMRITVLLSPITNHMMYPFML-LSLWGMLMTSSICLRQTDLKSLIAYSSVSHMALVIVA 300 Query: 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMM 377 I GA M++HGL SS LF Y+R+H+R + GL +P A+ + Sbjct: 301 ILIQSPWSFMGATALMVAHGLTSSVLFCLANTNYERVHSRTMLLARGLQTMLPLMALWWL 360 Query: 378 VFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ N+ LP T IGE ++I S F SN +L +++ALY+L++ G Sbjct: 361 TASLTNLALPPTINLIGELMIIASSFSWSNFTILLMGANTLITALYTLYMLTTTQRG 417 >gi|294959476|gb|ADF49011.1| NADH dehydrogenase subunit 4 [Bison bison] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPVHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|270267346|ref|YP_003331051.1| NADH dehydrogenase subunit 4 [Leptoderma lubricum] gi|269994274|dbj|BAI50269.1| NADH dehydrogenase subunit 4 [Leptoderma lubricum] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 200/360 (55%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPINRQRMYISLLTSLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNNTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P S+ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTLQYSQPLSLSSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFTANLANLALPPLPNLMGEIMIIATMFNWSPWTLALTGLGTLITASYSLYLF 412 >gi|294959434|gb|ADF48972.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959546|gb|ADF49076.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959616|gb|ADF49141.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959700|gb|ADF49219.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959714|gb|ADF49232.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959756|gb|ADF49271.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959770|gb|ADF49284.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959798|gb|ADF49310.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959812|gb|ADF49323.1| NADH dehydrogenase subunit 4 [Bison bison] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPVHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|226453393|ref|YP_002791038.1| NADH dehydrogenase subunit 4 [Bison bison] gi|157778813|gb|ABV70942.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959392|gb|ADF48933.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959406|gb|ADF48946.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959420|gb|ADF48959.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959462|gb|ADF48998.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959490|gb|ADF49024.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959504|gb|ADF49037.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959532|gb|ADF49063.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959560|gb|ADF49089.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959588|gb|ADF49115.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959602|gb|ADF49128.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959630|gb|ADF49154.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959644|gb|ADF49167.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959658|gb|ADF49180.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959672|gb|ADF49193.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959728|gb|ADF49245.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959742|gb|ADF49258.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959784|gb|ADF49297.1| NADH dehydrogenase subunit 4 [Bison bison] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPVHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATTLMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|153127172|ref|YP_001382091.1| NADH dehydrogenase subunit 4 [Meles anakuma] gi|152962743|dbj|BAF73979.1| NADH dehydrogenase subunit 4 [Meles meles anakuma] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/389 (33%), Positives = 204/389 (52%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 VD +S L++LTT+L P ++S + + + Y+ +L+ +I F + ++++ Sbjct: 58 VDSLSAPLLILTTWLLPLMFMASQHHLSKETLTRKKLYITMLTMLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALL---WTQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NL-------LVIQYWAQPLLNSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL P + LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLNPLTHLMAYPFMM-LSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIMAILIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+M+ F SN L + ++ALY Sbjct: 347 GLQMLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIALMGINITITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G ++ +K RE Sbjct: 407 SLYMLITTQRG-KYTHHIKNIKPSFTREN 434 >gi|284177737|ref|YP_003406738.1| NADH dehydrogenase subunit 4 [Moschus moschiferus] gi|213990239|gb|ACJ60541.1| NADH dehydrogenase subunit 4 [Moschus moschiferus] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQYHLSKENLTRKKLFITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPMSNSWSDVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L P +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITMFLNP-TTEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|242097429|emb|CAY40264.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/383 (34%), Positives = 208/383 (54%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLILLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLHT--QNNLGSLN 175 Query: 196 DL---YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLMMQYWIQPLPNSWSSIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTLLNPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T IGE V+++ F SN L ++++ALYS LY + Sbjct: 355 MAAWWLLASLTNLALPPTINLIGELFVVVATFSWSNITITLMGTNIIITALYS--LYMLI 412 Query: 432 VFGVSKC-EKVQQLKDLSLRERC 453 KC + V+ +K RE Sbjct: 413 TTQRGKCTDHVKSIKPSFTRENA 435 >gi|120586748|ref|YP_961404.1| NADH dehydrogenase subunit 4 [Elaphodus cephalophus] gi|111380730|gb|ABH09745.1| NADH dehydrogenase subunit 4 [Elaphodus cephalophus] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 202/355 (56%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLTRKKLYITMLILLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVLQYWVEPLPNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYSLYM 410 >gi|82492324|gb|ABB78060.1| NADH dehydrogenase subunit 4 [Oncorhynchus mykiss] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 203/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L++ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRAYISLLVSLQTFLVLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDNG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYTQ--PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMN 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P V ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|6648646|gb|AAF21272.1| NADH ubiquinone oxidoreductase subunit 4 [Hypophthalmichthys molitrix] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+ P AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEPPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 +++K+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLIKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|207559976|gb|ACI24571.1| NADH dehydrogenase subunit 4 [Oreamnos americanus] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/385 (34%), Positives = 208/385 (54%), Gaps = 34/385 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESPARKKLFISMLVLLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+ + + T Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLIALTYI---QNT----- 170 Query: 197 LYAMSKFPFSI-QYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M F I QYW MW+A +F +K+P++ H WLP AHV+AP AG Sbjct: 171 ---MGSLNFLILQYWVQPMSNSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA I+LK+GGYG +R L L+P+ + + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAILLKLGGYGMLRVTLLLYPI-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI+HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSISHMALVIVAILVQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALY Sbjct: 347 GLQMFLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLS 448 SL++ + + + + ++S Sbjct: 407 SLYM----LITTQRGKHTHHINNIS 427 >gi|12583909|gb|AAG59671.1| NADH dehydrogenase subunit 4 [Muntiacus reevesi] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 200/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++L +L P + +S + + + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLILAMWLLPLMLTASQHHLSKESLTRKKLYITMLILLQLFLIMTFTAAELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QSTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|16357426|ref|NP_443368.1| NADH dehydrogenase subunit 4 [Crenimugil crenilabis] gi|16267042|dbj|BAB70192.1| NADH dehydrogenase subunit 4 [Mugil cephalus] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 200/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAF 129 F H+ D +S L+VLT +L P IL+S I EN + I L L+ +I AF Sbjct: 52 FLGLHMATDPLSTPLLVLTCWLLPLMILASQNHISPEPENRQRMYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M +FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEMFMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L P S + W W +F +K+P++ H WLP AHV AP AGS+ Sbjct: 172 TGTLSLLTLQFCPPAPLSSYADKMW-WAGCLIAFLVKMPLYGAHLWLPKAHVXAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 A ++LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAY Sbjct: 231 VRAXVLLKLGGYGMMRMMILLEPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMTSWWFIASLANLALPPLPNLMGELMIISSLFNWSWWTLALTGIGTLITAAYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|327492705|ref|YP_004347596.1| NADH dehydrogenase subunit 4 [Tetractenos glaber] gi|327392598|dbj|BAK10025.1| NADH dehydrogenase subunit 4 [Tetractenos glaber] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/390 (34%), Positives = 214/390 (54%), Gaps = 11/390 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S +L D +S L++L+ +L P IL+S R Y+ + L+ +I AF Sbjct: 52 FLSPYLATDPLSTPLLILSCWLLPLMILASQNHTTHEPTNRQRMYITLLISLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M+LFY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMILFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L ++ ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLTLAHTAQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILVVLSPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQAPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S+ L G +++A YSL Sbjct: 350 QMMLPLMTAWWFITSLANLALPPLPNLMGELMIITSLFNWSSWTIGLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + + L+ RE ++ Sbjct: 410 YMFLMTQRGPAP-NHLMALEPSHTREHLLM 438 >gi|148298641|ref|YP_001249293.1| NADH dehydrogenase subunit 4 [Ailuropoda melanoleuca] gi|121592326|gb|ABM63261.1| NADH dehydrogenase subunit 4 [Ailuropoda melanoleuca] gi|145208512|gb|ABP38219.1| NADH dehydrogenase subunit 4 [Ailuropoda melanoleuca] gi|195182384|emb|CAQ68439.1| NADH dehydrogenase subunit 4 [Ailuropoda melanoleuca] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/394 (34%), Positives = 203/394 (51%), Gaps = 37/394 (9%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLVLTTWLLPLMLMASQFHLSKETLTRKKLYITMLILLQLFLIMTFSATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A+ Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLVAL------------- 164 Query: 196 DLYAMSKFP----FSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 LYA + +QYW MW+A +F +K+P++ H WLP AHV+A Sbjct: 165 -LYAQNSLGSLNFLMVQYWTQPLPNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEA 223 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGS+ LA ++LK+GGYG +R L PL + + A LSL +I S + + QTD+ Sbjct: 224 PIAGSMVLAAVLLKLGGYGMMRITTMLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDL 282 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K LIAYSS++HM V + I GA M++HGL SS LF Y+R H+R + Sbjct: 283 KSLIAYSSVSHMALVIVAILIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTM 342 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL +P A ++ + N+ LP T IGE V+M+ F SN +L + + Sbjct: 343 ILARGLQTLLPLMAAWWLLAGLTNLALPPTINLIGELFVVMATFSWSNITILLMGVNITI 402 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 +ALYSL++ G + ++ +K RE Sbjct: 403 TALYSLYMLISTQRG-KYTDHIKNIKPSYTRENA 435 >gi|253729525|ref|YP_003029824.1| NADH dehydrogenase subunit 4 [Thymallus arcticus] gi|227808642|gb|ACP40562.1| NADH dehydrogenase subunit 4 [Thymallus arcticus] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/360 (36%), Positives = 205/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPLNRQRTYITLLVSLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P ++I WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLLPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDNGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S++ L SK P ++ W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTL-QYSK-PLNLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLTKELAYPFIA-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 293 GHMGLAAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P V ++AN+ LP +GE ++I S+F S +L G +++A YSL+L+ Sbjct: 353 LPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSYWTLLLTGVGTLITASYSLYLF 412 >gi|25057645|ref|NP_739889.1| NADH dehydrogenase subunit 4 [Monocentris japonicus] gi|25005855|dbj|BAC23485.1| NADH dehydrogenase subunit 4 [Monocentris japonicus] Length = 460 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHMSPEPKNRQRTYISLLTSLQVFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLLQNETGTL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L F F + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMITLQYSKPFQLLTFGDKLW-WAGCLVAFLVKMPLYGIHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLDPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKALIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALVLMIAHGLASSALFCLANTNYERTHSRTMILARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTILLTGAGTMITAGYSLYMF 412 >gi|310788876|gb|ADP24441.1| NADH dehydrogenase subunit 4 [Chuanchia labiosa] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSAPLLVLSCWLLPLMILASQNHISPEPINRQRSYIMLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IILFYIMFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMFMLQYSQPLQLNSWGHMVWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVILDPLSKELAYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 GHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV V +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLAAVWWFVANLANLALPPLPNLMGEIMIITTLFGWSPWTILLTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIVGLQPFHTREHLLL 438 >gi|260766586|gb|ACX50322.1| NADH dehydrogenase subunit 4 [Catostomus plebeius] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 213/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMIVLQYSQPLILESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIVMLDPLSKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFAANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGAGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + V L RE ++ Sbjct: 413 LMSQRGPTPTHIV-GLSPFHTREHLLM 438 >gi|126215483|ref|YP_001054824.1| NADH dehydrogenase subunit 4 [Odax cyanomelas] gi|125625493|dbj|BAF46853.1| NADH dehydrogenase subunit 4 [Odax cyanomelas] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 206/359 (57%), Gaps = 12/359 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L++L+ +L P IL+S + R Y+ + L+ +I AF + ++ Sbjct: 57 MATDSLSTPLLILSCWLLPLMILASQNHTSSEPAQRQRTYITLMIALQVFLIMAFSATEV 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + S Sbjct: 117 IMFYVMFEATLIPTLLIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNNLGSLS 176 Query: 194 IIDLY----AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 ++ L A+S F F+ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 LLALQWAPPALS-FSFADKLW-WAACLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L +I L+ + QTD+K LIAYSS+ Sbjct: 235 VLLKLGGYGMMRVLMMLDPLTKELAYPFII-LALWGVIMTGLICLRQTDLKALIAYSSVG 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQAPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + T+AN+ LP + E +VI S+F S +L G +++A YSL+++ Sbjct: 354 PVMTAWWFISTLANLALPPLPNLMAELMVITSLFNWSWWTLLLTGAGTLITAGYSLYMF 412 >gi|256532789|gb|ACU81695.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532915|gb|ACU81812.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532999|gb|ACU81890.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533041|gb|ACU81929.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533055|gb|ACU81942.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533223|gb|ACU82098.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533265|gb|ACU82137.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533377|gb|ACU82241.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533405|gb|ACU82267.1| NADH dehydrogenase subunit 4 [Bos grunniens] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPMHNSWSSIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|251829659|gb|ACT21212.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 207/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINNIKXSFTRENALM 437 >gi|148922680|ref|YP_001293469.1| NADH dehydrogenase subunit 4 [Siganus fuscescens] gi|115361449|gb|ABI95816.1| NADH dehydrogenase subunit 4 [Siganus fuscescens] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/361 (37%), Positives = 206/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S + QE R Y+ L+ +I AF + Sbjct: 54 SPYMATDPLSTPLLVLTCWLLPLMILASQNHTAQEPINRQRVYITLLTSLQIFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEVIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + P + + W W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQFSNPIPLTTYADKLW-WMACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I F +L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRILVVLEPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + T+AN+ LP +GE ++I S+ S +L G +++A YSL++ Sbjct: 352 ALPLMATWWFIGTLANLALPPLPNLMGELMIISSLLNWSWWTLLLTGVGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|5835844|ref|NP_007844.1|ND4_15067 NADH dehydrogenase subunit 4 [Pongo abelii] gi|2829783|sp|P92698|NU4M_PONAB RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|1743304|emb|CAA66292.1| NAD4 [Pongo abelii] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/383 (33%), Positives = 205/383 (53%), Gaps = 13/383 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLSTPLLMLTTWLLPLMIMASQHHLSNEPPSRKKLYLTMLISLQISLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE +LIP VII WG ER+ A F YT GS+ +L A++ + S I Sbjct: 119 YILFETTLIPTLVIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALI-HTYNTLGSLNIV 177 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ + W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLTLTARELT-DSWSNSLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLIPILNPLTKHMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVVAAILIQTPWSFTGATTLMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A+ ++ ++ N+ LP T +GE V+M++F SN +L ++++ LYSL+++ Sbjct: 356 ALWWLLASLTNLALPPTINLLGELSVLMAMFSWSNITILLTGLNMLITTLYSLYMFTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMV 455 G + +K RE ++ Sbjct: 416 RG-TPTHHTNNMKPSFTRENTLM 437 >gi|222835861|ref|YP_002586825.1| NADH dehydrogenase subunit 4 [Barbourisia rufa] gi|222051512|dbj|BAH15203.1| NADH dehydrogenase subunit 4 [Barbourisia rufa] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 207/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + Q R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHVSPEPQNRQRMYISLLTSLQVFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 LIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQADAGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLVIQYTKPLQLLSYADKLW-WTGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL ++ P I F +L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLEPLTTKLCYPFIIF-ALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALVLMIAHGLASSALFCLANTNYERTHSRTMVLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+F S +L G++++A YSL+++ Sbjct: 354 PLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLLLTGAGMMITAGYSLYMF 412 >gi|56692536|ref|YP_163929.1| NADH dehydrogenase subunit 4 [Anguilla interioris] gi|56565410|dbj|BAD78084.1| NADH dehydrogenase subunits 4 [Anguilla interioris] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMRLEPINRQRSYITLLISLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPLILSSWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTP-NHITGLEPSHTREHLLI 438 >gi|56692392|ref|YP_164020.1| NADH dehydrogenase subunit 4 [Anguilla reinhardtii] gi|56565508|dbj|BAD78175.1| NADH dehydrogenase subunits 4 [Anguilla reinhardtii] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMRLEPINRQRSYITLLIFLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPLILSSWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTP-NHITGLEPSHTREHLLI 438 >gi|53686316|ref|YP_097137.1| NADH dehydrogenase subunit 4 [Plethodon elongatus] gi|51979907|gb|AAU20574.1| NADH dehydrogenase subunit 4 [Plethodon elongatus] Length = 458 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 139/400 (34%), Positives = 217/400 (54%), Gaps = 20/400 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +LG+D IS L+ LT +L P IL+S ++ N + Y+ L+ M++ AF Sbjct: 53 NKYLGLDQISSPLLTLTCWLLPLMILASKNHLKNNPLGRQQMYISMLTTLQIMLVLAFSP 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++ LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M Sbjct: 113 TELTLFYITFEATLIPTLIIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLMNTTTN 172 Query: 191 TSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 T S+ L++ + S +W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 173 TLSMGLLFSSPQMFMMTSTNNILWFGCLSAFMVKMPLYGAHLWLPKAHVEAPVAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L PL + +I L+L I+ L+ QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGIIRITLMFTPLIELSYPFII--LALWGILMTGLICTRQTDLKSLIAYSSV 290 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V + GA+ M+SHG++SSALF Y+R+H+R + GL Sbjct: 291 SHMGLVVAASLIQTQWSFTGAIILMISHGMISSALFCLANTNYERMHSRTMLLARGLQTV 350 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A ++ M NM LP T GE +++S+F S ++ G +++A Y+L+++ Sbjct: 351 FPLMATWWLILNMFNMALPPTPNLWGELTIMVSLFNWSPWTILITGLGTLITAAYTLYMF 410 Query: 429 RKVVFGVSKCEKVQQLKDLS---LRERCM----VYPIAVL 461 + + + LK S RE C+ + P+A+L Sbjct: 411 ----LMTQRGQLPKHLKHASPTLTREHCLMMMHLMPMALL 446 >gi|194277574|ref|YP_492577.2| NADH dehydrogenase subunit 4 [Coreoleuciscus splendidus] gi|190888462|gb|ABC56376.2| NADH dehydrogenase subunit 4 [Coreoleuciscus splendidus] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPIARQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLDSWGHKLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGIMIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGEIMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + V +L RE ++ Sbjct: 413 LMSQRGPTPTH-VMKLPPFHTREHLLM 438 >gi|37620626|gb|AAQ95122.1| NADH dehydrogenase subunit 4 [Odobenus rosmarus] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/383 (33%), Positives = 208/383 (54%), Gaps = 13/383 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDML 135 D +S L+ LTT+L P +++S + + + Y+ + L+ ++I F + +++ Sbjct: 57 STDSLSTPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYITMLISLQLLLIMTFTATELI 116 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ M T ++ Sbjct: 117 MFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLIALLHMQNNMGTLNL 176 Query: 195 IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + M++ + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LVTQYMTQT--LLDSWSNIFLWLACMTAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 294 MALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRIMILTRGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A+ ++ ++ N+ LP T IGE LV+++ F SN L ++++ALYSL++ Sbjct: 354 LMAMWWLLASLTNLALPPTINLIGELLVVITSFSWSNITITLMGANIIITALYSLYMLTM 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G ++ +K RE Sbjct: 414 TQRG-KYTHHIKNIKPSFTRENA 435 >gi|108793430|ref|YP_636889.1| NADH dehydrogenase subunit 4 [Sirembo imberbis] gi|25005533|dbj|BAC23199.1| NADH dehydrogenase subunit 4 [Sirembo imberbis] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/351 (36%), Positives = 200/351 (56%), Gaps = 8/351 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P IL+S Q + R Y+ L+ +I AF + +M++F Sbjct: 60 DPLSSPLLVLTCWLLPLMILASQNHTQLEPANHQRIYITLLTSLQFFLIMAFSATEMIMF 119 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 + FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T S++ Sbjct: 120 FTMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTMAGSLPLLVALLSLQKDVGTLSMLT 179 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L+ ++ P W +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 180 LHFSHTTQLPTLTNNLWWAGCLIAFLVKMPLYGIHLWLPKAHVEAPIAGSMVLAAVLLKL 239 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + + PL +Q P + L+L ++ S + + Q D+K LIAYSS++HMG V Sbjct: 240 GGYGMMRIMTIMQPLTAQLNYPFMI-LALWGVLMTSSICLRQADLKSLIAYSSVSHMGLV 298 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI S G GA+ M++HGL SSALF V Y+R H+R + GL +P Sbjct: 299 IGGILSQTPWGFTGALVLMIAHGLTSSALFCLANVNYERTHSRTMLLSRGLQILLPLTTT 358 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 + +AN+ LP +GE ++I+S+F SN +L G++++A YSL Sbjct: 359 WWFITALANLALPPLPNLMGELMIIVSLFNWSNWTLLLTGAGMLITAAYSL 409 >gi|207559836|gb|ACI24441.1| NADH dehydrogenase subunit 4 [Capra falconeri] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QEN--FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ LVL + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLLKENPTRKKLFISMLVLLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALI---------HIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LILQYWAQPVPNSWSNVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMMRITLLLNPI-TDYMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|5836026|ref|NP_008786.1|ND4_15102 NADH dehydrogenase subunit 4 [Plestiodon egregius] gi|5103718|dbj|BAA79219.1| NADH dehydrogenase subunit 4 [Plestiodon egregius] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/391 (33%), Positives = 205/391 (52%), Gaps = 13/391 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S + +D +S L+VL+ +L P ++S + + R +++ L+ ++ F Sbjct: 52 FASQYFNIDMVSAPLMVLSCWLLPLMAIASQNHLHQEPVNRKRMFLVTLTTLQVALLLTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + + +FYI FE +LIP +II WG +ER+ A F YT GS+ +L AI+ + Sbjct: 112 SATEFTMFYIMFETTLIPTLIIITRWGNQAERLSAGIYFLFYTLAGSLPLLVAILYL--N 169 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 K S++ + P W +W+A +F +K+PM+ H WLP AHV+AP AGS Sbjct: 170 NKYSNMFIPILHTLQPEMTHTWTNNMLWLACLMAFLVKMPMYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG IR L P+++Q P I LS+ II S + + Q D+K LIA Sbjct: 230 MVLAAILLKLGGYGIIRISPILSPMSTQMSYPFII-LSMWGIIMTSSICLRQADLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V + GAM M++HGL SS LF Y+R H+R + G Sbjct: 289 YSSVSHMGLVIAASLIQTPWSLTGAMALMIAHGLTSSMLFCLANTNYERTHSRTLLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P ++ + NM LP T GE L++ S+F S+ ++ G +L+A YS Sbjct: 349 LQLILPLMTAWWLLANLTNMALPPTINLTGELLIMASMFNWSSPTIIMTGLGTLLTAAYS 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L ++ G + Q++ RE ++ Sbjct: 409 LHMFLTTQRGKLPTHMI-QMEATHTREHLLM 438 >gi|207560032|gb|ACI24623.1| NADH dehydrogenase subunit 4 [Rupicapra rupicapra] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + +++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLARKKLFISMLVLLQLFLIMTFAATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MMGSLNF-LVLQYWVQPMSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLLLNP-TTDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMVAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|193075648|gb|ACF08726.1| NADH dehydrogenase subunit 4 [Coreoleuciscus splendidus] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPIARQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLDSWGHKLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGEIMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-NHIMKLPPFHTREHLLM 438 >gi|38707474|ref|NP_944772.1|ND4_17487 NADH dehydrogenase subunit 4 [Phocoena phocoena] gi|38602595|emb|CAD88049.1| NADH4 protein [Phocoena phocoena] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 199/353 (56%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L++++I F ++++++F Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLLKEPLTRKKLYITMLVMLQALLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + T + + Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYLQNTLGTLNFLL 178 Query: 197 L-YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L Y P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 LQYWTQPLPTSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL P + LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRITSILNPLTGHMAYPFLA-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I GA M++HGL SS LF Y+R+H+R + GL P A Sbjct: 298 IAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 358 WWLLASLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGANIVITALYSLYM 410 >gi|5835341|ref|NP_007377.1|ND4_11653 NADH dehydrogenase subunit 4 [Rhinoceros unicornis] gi|2499268|sp|Q96068|NU4M_RHIUN RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|1666203|emb|CAA66010.1| NADH subunit 4 [Rhinoceros unicornis] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 205/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P I++S + + + Y+ ++L+ ++I F + +++LF Sbjct: 59 DPLSAPLLVLTTWLLPLMIMASQHHLSKEPITRKKLYITMLIMLQLLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 Y+ FEA+LIP +II WG +ER+ A + F YT GS+ +L A++ + + T S+ Sbjct: 119 YVLFEATLIPTLIIITRWGNQTERLNAGFYFLFYTLTGSLPLLIALIHI--QNITGSLNL 176 Query: 197 L---YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L Y+ P S ++W+A F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LLIQYSAQTLPNSWSNTFLWLACMMGFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL S P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITMILNPLTSHMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A+ ++ ++ N+ LP T +GE V++S F SN +L ++++ALYSL++ Sbjct: 356 AMWWLLASLTNLALPPTINLVGELFVVVSSFSWSNLTIILMGTNIIITALYSLYM 410 >gi|294959574|gb|ADF49102.1| NADH dehydrogenase subunit 4 [Bison bison] gi|294959686|gb|ADF49206.1| NADH dehydrogenase subunit 4 [Bison bison] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPVHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|260766568|gb|ACX50310.1| NADH dehydrogenase subunit 4 [Catostomus fumeiventris] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/360 (37%), Positives = 203/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMTILQYSQPLILESWGHKFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVVLDPLSKELAYPFII-LALWGIIMTGSICLRQTDFKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I S+F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFAANLANLALPPLPNLMGELMIITSLFSWSPWTIALTGAGTLITAGYSLYLF 412 >gi|118196932|emb|CAL37030.1| NADH dehydrogenase subunit 4 [Ramphotyphlops australis] Length = 450 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/379 (34%), Positives = 210/379 (55%), Gaps = 15/379 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 + ++ +D IS L+VL+ +L P IL+S K++ E+ R ++++ L ++ + F Sbjct: 50 LANLYIDIDQISAPLLVLSFWLLPMTILASQKTLLEDPPQRQRLFLLSLTTLHALTVITF 109 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + L YI FEA+LIP ++I WG ++R+ A F +YT S+ +L AI+ + Sbjct: 110 SASSFTLMYIAFEATLIPTMILITRWGHQADRLLAGSYFMIYTLLSSMPLLIAILYL--- 166 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T ++ P ++ YW +W+A +F +K+PM+ FH WLP AHV+AP AGS Sbjct: 167 DSTFMAPTMFFHPTQP-TLSYWHMTSLWLACLLAFLVKMPMYGFHLWLPKAHVEAPVAGS 225 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LKMGGYG IR L L PL + + + +SL +I + + QTD+K LIA Sbjct: 226 MVLAAILLKMGGYGIIRILQALPPLETCTLS-LFVVISLWGMIMTNSTCLQQTDLKSLIA 284 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+ HMG V I G+ GAM M++HG SS LF + Y+R +TR + G Sbjct: 285 YSSVGHMGLVISAILIQTPWGLSGAMLLMIAHGFTSSLLFCLTNMSYERTNTRLLILTKG 344 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L ++P ++ ++ NM LP + F E L++ S+F SN G +++A+YS Sbjct: 345 LHMSLPLMTSWWLLASLMNMALPPSMNFTSEILIMSSIFNWSNLSIFHLGLGTLITAVYS 404 Query: 425 LWLYRKVVFGVSKCEKVQQ 443 L ++ FG +K++Q Sbjct: 405 LHMFTSTQFG-KPNQKLKQ 422 >gi|38707488|ref|NP_944642.1| NADH dehydrogenase subunit 4 [Eschrichtius robustus] gi|38602455|emb|CAD87919.1| NADH4 protein [Eschrichtius robustus] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/356 (35%), Positives = 208/356 (58%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L++++I F +++++LF Sbjct: 59 DPLSAPLLILTMWLLPLMLMASQSHLAKEPPVRKKLYVTMLIMLQTLLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALLFL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAQPLSTSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITPMLGPL-TEHMAYPFLMLSLWGMVMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MS+F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSIFSWSNPTILLMGTNIVITALYSLYM 410 >gi|296905328|gb|ADH84025.1| NADH dehydrogenase subunit 4 [Sinibotia robusta] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/384 (35%), Positives = 207/384 (53%), Gaps = 13/384 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLASLQTFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNTTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPMILNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAAWWFIANLANLALPPLPNLMGEIMIITTLFNWSPWTIALTGMGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRER 452 G + + L RE Sbjct: 413 LMSQRGPTP-HHITGLPPFHTREH 435 >gi|256532523|gb|ACU81448.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532537|gb|ACU81461.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532621|gb|ACU81539.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532677|gb|ACU81591.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532691|gb|ACU81604.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533125|gb|ACU82007.1| NADH dehydrogenase subunit 4 [Bos grunniens] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPMHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|209886907|ref|YP_002290762.1| NADH dehydrogenase subunit 4 [Elassoma zonatum] gi|209446983|dbj|BAG74847.1| NADH dehydrogenase subunit 4 [Elassoma zonatum] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 204/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 ++ + D IS L++LT +L P I++S R Y+ L+ +I AF + Sbjct: 54 NHFMATDPISTPLMILTCWLLPLTIIASQNHTSSEPVSRQRMYITLLTSLQFFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TELIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLILQNSAG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S++ L + ++ ++W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLTLQYNNPIHLMSYADKFW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRMLTVLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI + G+ GAM M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVAGILTQTSWGITGAMILMIAHGLTSSALFCLANTNYERTHSRTMILARGLQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P ++AN+ LP +GE ++I S+F S VL G +++A YSL++ Sbjct: 352 ALPLMTAWWFFSSLANLALPPLPNLMGELMIITSLFNWSWWTIVLTGSGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|16357019|ref|NP_443433.1| NADH dehydrogenase subunit 4 [Elassoma evergladei] gi|16267323|dbj|BAB70439.1| NADH dehydrogenase subunit 4 [Elassoma evergladei] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 138/391 (35%), Positives = 213/391 (54%), Gaps = 29/391 (7%) Query: 50 FVW--SVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 F W SV + G +S I+ F + D IS L++LT +L P I++S Sbjct: 39 FTWLSSVLETGWNS---------INLF----MATDPISTPLMILTCWLLPLTIIASQNHT 85 Query: 108 Q----ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIY 162 R Y+ L+ +I AF + ++++FY+ FEA+LIP ++I WG +ER+ Sbjct: 86 SSEPINRQRMYITLLTSLQFFLILAFSATELIMFYVMFEATLIPTLILITRWGNQTERLN 145 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFP-----FSIQYWMWIAFFC 217 A F YT GS+ +L A++++ + T S+ L P ++ ++W W A Sbjct: 146 AGTYFLFYTLVGSLPLLVALLIL--QNSTGSLSLLTLQYNNPIHLMSYADKFW-WAACLM 202 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG IR L L PL+ + P Sbjct: 203 AFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLLKLGGYGMIRMLTVLEPLSKELSYPF 262 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 I L+L +I + + QTD+K LIAYSS++HMG V GI + G+ GAM M++HG Sbjct: 263 II-LALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVVAGILTQTSWGITGAMILMIAHG 321 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L SSALF Y+R H+R + GL +P ++AN+ LP +GE + Sbjct: 322 LTSSALFCLANTNYERTHSRTMILARGLQMALPLMTTWWFFSSLANLALPPLPNLMGELM 381 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +I S+F S L G +++A YSL+++ Sbjct: 382 IITSLFNWSWWTIALTGSGTLITAGYSLYMF 412 >gi|156078373|gb|ABU47843.1| NADH dehydrogenase subunit 4 [Pan troglodytes] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/408 (33%), Positives = 218/408 (53%), Gaps = 29/408 (7%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LT +L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSLSFSSDPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIV------ 183 + D+++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ Sbjct: 112 ATDLIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTL 171 Query: 184 ----VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 ++ T + + +A MW+A+ +F +K+P++ H WLP AHV+A Sbjct: 172 GSLNILLLTLPTQELSNTWA--------NNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEA 223 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGS+ LA ++LK+GGYG +R L L PL P + LSL +I S + + QTD+ Sbjct: 224 PIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLM-LSLWGMIMTSSICLRQTDL 282 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K LIAYSS++HM V I GA+ M++HGL SS LF Y+R H+R + Sbjct: 283 KSLIAYSSVSHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIM 342 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL +P A ++ ++AN+ LP T +GE V+++ F SNT +L F +++ Sbjct: 343 ILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLI 402 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +ALYSL+++ +G S + +K RE +++ PI +L++ Sbjct: 403 TALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFLHLSPILLLSL 449 >gi|94481772|gb|ABF21479.1| NADH dehydrogenase subunit 4 [Pollachius virens] Length = 461 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLML--QNSTG 173 Query: 193 SIIDL-----YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+ L + PF + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLIIPYTKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S +L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGVGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|195661124|ref|YP_002117876.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|195182369|emb|CAQ68426.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097233|emb|CAY39895.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097275|emb|CAY39974.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097289|emb|CAY40001.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097443|emb|CAY40290.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097457|emb|CAY40320.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097471|emb|CAY40346.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097611|emb|CAY40610.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/383 (34%), Positives = 208/383 (54%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLILLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLHT--QNNLGSLN 175 Query: 196 DL---YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLMMQYWIQPLPNSWSSIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTLLNPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T IGE V+++ F SN L ++++ALYS LY + Sbjct: 355 MAAWWLLASLTNLALPPTINLIGELFVVVATFSWSNITITLMGTNIIITALYS--LYMLI 412 Query: 432 VFGVSKC-EKVQQLKDLSLRERC 453 KC + ++ +K RE Sbjct: 413 TTQRGKCTDHIKSIKPSFTRENA 435 >gi|14587493|gb|AAK70530.1|AF224619_4 NADH dehydrogenase subunit 4 [Cheirogaleus major] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 213/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLMKETWTRKKSYLSMLIFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALI---YTQNSLGSLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + M+ + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 MATMTLCNQELSNSWSNGLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P+ ++Y A + L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPM-TKYLAYPLLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQSFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP + IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELLVIMASFSWSNITIILTGLNMLITALYSLYMLTVT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G L RE + + P+ +LT+ Sbjct: 415 QRG-KPTYHTHNLNPSLTRENTLMSMHMLPVILLTL 449 >gi|15451813|ref|NP_203736.1| NADH dehydrogenase subunit 4 [Engraulis japonicus] gi|15430505|dbj|BAB64373.1| NADH dehydrogenase subunit 4 [Engraulis japonicus] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/385 (34%), Positives = 207/385 (53%), Gaps = 9/385 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S Q R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSSPLLVLTCWLLPLMILASQNHTQTEPISRQRMYITLLTSLQAFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 VIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLALQASTGSL 175 Query: 193 SIIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 S+I L + W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 SMITLNFNELPSLTHQADKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR L PL + P I L+L I+ + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRITPILDPLTKEMAYPFIV-LALWGIVMTGTICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI + G+ GA+ M++HGL SSALF Y+R H+R + G+ P Sbjct: 295 MGLVAGGILTQTPWGLTGAIILMIAHGLTSSALFCLANTSYERTHSRTMALARGMQTLFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A + +AN+ LP +GE ++I ++F S VL G +++A YSL+++ Sbjct: 355 LTATWWFIANLANLALPPLPNLMGEMMIITTMFNWSPWSIVLTGLGTLITAGYSLYMFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 415 TQRGQTPSH-ITALPPYHTREHLLI 438 >gi|195933643|ref|YP_002117939.1| NADH dehydrogenase subunit 4 [Ursus thibetanus ussuricus] gi|148910926|gb|ABR18508.1| NADH dehydrogenase subunit 4 [Ursus thibetanus ussuricus] gi|151384878|gb|ABS11101.1| NADH dehydrogenase subunit 4 [Ursus thibetanus ussuricus] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/391 (33%), Positives = 208/391 (53%), Gaps = 31/391 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQSHLSKETLTRKKLYITMLVLLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLH---TQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L M QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NLLMM-------QYWIQPLPNSWSSVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL S + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLDPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMVAHGLTSSMLFCLANSNYERVHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T IGE V+++ F SN L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVVATFSWSNITITLMGANIIITALY 406 Query: 424 SLWLYRKVVFGVSKC-EKVQQLKDLSLRERC 453 S LY + KC + ++ +K RE Sbjct: 407 S--LYMLITTQRGKCTDHIKSIKPSFTRENA 435 >gi|133755344|ref|NP_112141.2|ND4_15633 NADH dehydrogenase subunit 4 [Plecoglossus altivelis] gi|55700052|dbj|BAB40610.2| NADH dehydrogenase subunit 4 [Plecoglossus altivelis] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 201/360 (55%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHISPEPVNRQRTYISLLASLQMFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ E T Sbjct: 116 IIMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNETGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+I L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITL--QYSQPLHLSAWGDKLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R +L L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMLMLDPLSKELAYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTAYERTHSRTMLLARGLQMA 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A V +AN+ LP +GE ++I ++F S + G +++A YSL+L+ Sbjct: 353 LPLTATWWFVANLANLALPPLPNLMGELVIITAMFNWSYWTIAITGVGTLITASYSLYLF 412 >gi|299825742|ref|YP_003734672.1| NADH dehydrogenase subunit 4 [Anchoviella sp. LBP 2297] gi|299758149|dbj|BAJ09981.1| NADH dehydrogenase subunit 4 [Anchoviella sp. LBP 2297] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S Q R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSSPLLVLTCWLLPLMILASQNHTQVEPISRQRMYITLLTSLQAFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLALQASTGSL 175 Query: 193 SIIDLYAMSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+I L ++ P I + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMITL-NFNQPPTLIHQADKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L PL + P I L+L I+ + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRITPILDPLTKEMAYPFIV-LALWGIVMTGTICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G+ GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 293 SHMGLVASGILTQTPWGLTGAIILMIAHGLTSSALFCLANTSYERTHSRTMALARGMQTL 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTATWWFIANLANLALPPLPNLMGEMMIITTMFNWSPWSIILTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMTQRGQTPSH-ITALPPYHTREHLLI 438 >gi|159793507|ref|YP_001542777.1| NADH dehydrogenase subunit 4 [Ursus thibetanus] gi|121592298|gb|ABM63235.1| NADH dehydrogenase subunit 4 [Ursus thibetanus] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/391 (33%), Positives = 208/391 (53%), Gaps = 31/391 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQSHLSKETLTRKKLYITMLVLLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLH---TQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L M QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NLLMM-------QYWIQPLPNSWSSVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL S + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLDPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMVAHGLTSSMLFCLANSNYERVHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T IGE V+++ F SN L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVVATFSWSNITITLMGANIIITALY 406 Query: 424 SLWLYRKVVFGVSKC-EKVQQLKDLSLRERC 453 S LY + KC + ++ +K RE Sbjct: 407 S--LYMLITTQRGKCTDHIKSIKPSFTRENA 435 >gi|327492733|ref|YP_004347622.1| NADH dehydrogenase subunit 4 [Omegophora armilla] gi|327392612|dbj|BAK10038.1| NADH dehydrogenase subunit 4 [Omegophora armilla] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/390 (34%), Positives = 216/390 (55%), Gaps = 11/390 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F + ++ D +S L+VL+ +L P IL+S + N + I+ LV L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLVLSCWLLPLMILASQNHTKHEPVNRQRMYISLLVSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 AATEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDL-YAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L Y+ + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLTLIYSTPSQLYTYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVSLEPLTKELSYPFII-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QTALPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIALTGMGTLITASYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + L+ RE ++ Sbjct: 410 YMFLTTQRG-PLPNHILALEPSHTREHLLI 438 >gi|157736225|ref|YP_001491366.1| NADH dehydrogenase subunit 4 [Trixiphichthys weberi] gi|139000727|dbj|BAF51890.1| NADH dehydrogenase subunit 4 [Trixiphichthys weberi] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 203/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S L D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPLLATDPLSTPLLVLTCWLLPLMILASQNHTSSEPINRQRIYITLLASLQISLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +++LFY+ FE +LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 AATEIILFYVMFETTLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQKN 171 Query: 189 KKTSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L ++ ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 VGTLSLLTLQYLAPLHLVSYADKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I F ++ +I L+ + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMLVLLEPLTKELSYPFIIF-AMWGVIMTGLICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QTALPLMATWWFFASLANLALPPLPNLMGELMIITSLFNWSWWTLLLTGVGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|120944012|ref|YP_973111.1| NADH dehydrogenase subunit 4 [Ursus thibetanus mupinensis] gi|89112905|gb|ABD61069.1| NADH dehydrogenase subunit 4 [Ursus thibetanus mupinensis] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/391 (33%), Positives = 208/391 (53%), Gaps = 31/391 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQSHLSKETLTRKKLYITMLVLLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLH---TQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L M QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NLLMM-------QYWIQPLPNSWSSVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL S + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLDPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMVAHGLTSSMLFCLANSNYERVHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T IGE V+++ F SN L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVVATFSWSNITITLMGANIIITALY 406 Query: 424 SLWLYRKVVFGVSKC-EKVQQLKDLSLRERC 453 S LY + KC + ++ +K RE Sbjct: 407 S--LYMLITTQRGKCTDHIKSIKPSFTRENA 435 >gi|21717330|ref|NP_659346.3| NADH dehydrogenase subunit 4 [Odobenus rosmarus rosmarus] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/383 (33%), Positives = 208/383 (54%), Gaps = 13/383 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDML 135 D +S L+ LTT+L P +++S + + + Y+ + L+ ++I F + +++ Sbjct: 57 STDSLSTPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYITMLISLQLLLIMTFTATELI 116 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ M T ++ Sbjct: 117 MFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLIALLHMQNNMGTLNL 176 Query: 195 IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + M++ + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LVTQYMTQT--LLDSWSNIFLWLACMTAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 294 MALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRIMILTRGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A+ ++ ++ N+ LP T IGE LV+++ F SN L ++++ALYSL++ Sbjct: 354 LMAMWWLLASLTNLALPPTINLIGELLVVITSFSWSNITITLMGANIIITALYSLYMLTM 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G ++ +K RE Sbjct: 414 TQRG-KYTHHIKNIKPSFTRENA 435 >gi|14587458|gb|AAK70510.1|AF224614_4 NADH dehydrogenase subunit 4 [Cheirogaleus medius] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/395 (34%), Positives = 215/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLMKETWMRKKLYLSMLIFLQVFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYT--QNFLGSLNM 176 Query: 195 --IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I LY ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LTITLYNQELSNSWSNSFLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P+ +++ A + L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITMILDPM-TKFLAYPLLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 VT+ I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVTMAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQSFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELLVIMASFSWSNITIILTGLNMLITALYSLYMLTITQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G S L RE + ++PIA+LT+ Sbjct: 416 RGKSTYH-THNLNPSFTRENTLMSMHMFPIALLTL 449 >gi|6648667|gb|AAF21286.1| NADH ubiquinone oxidoreductase subunit 4 [Schizothorax prenanti] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/386 (34%), Positives = 211/386 (54%), Gaps = 13/386 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 L +S L+VLT +L P IL+S I R Y++ L++ +I AF + ++ Sbjct: 57 LATGPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYIMLLASLQTFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T + Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTGT 174 Query: 194 IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + L P + W W +F +K+P++ H WLP AHV AP AGS+ LA Sbjct: 175 LSMLVLQYSQPLQLDSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVGAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++L++GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLELGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQVIF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 354 PLTAVWWFIANLANLALPPLPNLMGELMIITTLFSWSPWTILLTGLGTLITAGYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 414 MSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|315638074|ref|ZP_07893259.1| NADH-quinone oxidoreductase subunit M [Campylobacter upsaliensis JV21] gi|315481922|gb|EFU72541.1| NADH-quinone oxidoreductase subunit M [Campylobacter upsaliensis JV21] Length = 492 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 162/504 (32%), Positives = 265/504 (52%), Gaps = 32/504 (6%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 L+I+ F P L F+ S +LG G F V + + +L ++ F +G S Sbjct: 2 LNILIFFPLLVAFL---SFFLGRGGIKIFSVVASLLILGL--NLQIFFDFLQGVS----F 52 Query: 66 EYYHWIDY--FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 E + + + F S+H+GV IS+ L++L + I S+ ++ + + A LE Sbjct: 53 ESHFSLGFAKFFSFHIGVSAISLSLMLLCSL----MIFLSFLFLKIENKAIVSAIFFLEF 108 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 ++G F + D LLFYIF+E SL+P+ I+GV+G + A KFF+Y F GSI ML AI Sbjct: 109 AMMGLFSAQDALLFYIFWEFSLLPLLYILGVYGKDFK--AGIKFFIYAFAGSILMLVAI- 165 Query: 184 VMCWEKKTSSIIDLYA---------MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 + T ++ ++ +S P Q +++AFF +FAIK P+FP HTW P Sbjct: 166 -LYQASLTQQVLGIFTFDLEIWKNNVSVTPLLEQIVLFLAFFIAFAIKAPLFPLHTWAPK 224 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 + +P SV L + KM +G ++F LPLFP AS Y P + L +I+++Y ++++ Sbjct: 225 VYANSPILVSVML--VAFKMAPFGFLQFCLPLFPDASVYLMPFVLVLCVISVVYCAMIAF 282 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 D+K+LIAYSSI+H+G + GIF+ G+ GA+F M +HGLV+ LF ++ + Sbjct: 283 KTRDLKELIAYSSISHIGIMVAGIFTFSTLGISGAVFYMFAHGLVTGTLFLLAHLLVKKY 342 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 T ++ L P +A+ + +A++ LP T F+GEFLV++++ + + +A+ A Sbjct: 343 GTSELNKLHSLSLKAPGFAIFFALVLLASVSLPLTISFVGEFLVLLALAKINIFLALFAG 402 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 V+L A+Y L ++RK+ F + E L +RE + P+ L + GI P + Sbjct: 403 LVVILGAIYMLAVFRKIFFMQKEGEIAS--FGLKMREILALIPVIALIFYLGIAPNILLK 460 Query: 475 TFSVPLSSIIENYTLKTGYSDSVK 498 S+ E L+ SV Sbjct: 461 PLQDEAKSLQEMMHLRALEQKSVN 484 >gi|256533111|gb|ACU81994.1| NADH dehydrogenase subunit 4 [Bos grunniens] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPMHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTIKLIGELFVMMSTFSWSNITIILMGMNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|242097485|emb|CAY40372.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097499|emb|CAY40398.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097513|emb|CAY40425.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/383 (34%), Positives = 208/383 (54%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLILLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLHT--QNNLGSLN 175 Query: 196 DL---YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLMMQYWIQPLPNSWSSIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTLLNPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T IGE V+++ F SN L ++++ALYS LY + Sbjct: 355 MAAWWLLASLTNLALPPTINLIGELFVVVATFSWSNITITLMGTNIIITALYS--LYMLI 412 Query: 432 VFGVSKC-EKVQQLKDLSLRERC 453 KC + ++ +K RE Sbjct: 413 TTQRGKCTDHIKSIKPSFTRENA 435 >gi|42632281|ref|NP_976109.1| NADH dehydrogenase subunit 4 [Rhinolophus pumilus] gi|16416418|dbj|BAB70627.1| NADH dehydrogenase subunit 4 [Rhinolophus pumilus] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/357 (35%), Positives = 207/357 (57%), Gaps = 16/357 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENFRE---YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S + E+ + +M ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLMLTTWLLPLMLIASQHHLANESLNQKKLFMTMLILLQVFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLLPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI---QNTTGTLN 175 Query: 197 LYAMSKF---PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + +S + P S + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 176 -FLLSTYWLQPLSPSWSNAFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L P + + A LSL +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMLRITMLLNP-VTDFMAYPFLILSLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 294 MALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTILP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+MS F S+ +L +V++ALYSL++ Sbjct: 354 LMAAWWLLASLTNLALPPTINLIGELFVVMSTFSWSSMSIILMGTNIVITALYSLYM 410 >gi|207559822|gb|ACI24428.1| NADH dehydrogenase subunit 4 [Budorcas taxicolor] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 205/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QEN--FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN +++ I+ L+L + +I F + +++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENPARKKFFISMLILLQLFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI--QNTMGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPMPSSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIAYSSI+HM Sbjct: 237 KLGGYGMLRITLLLDPI-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSISHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+MS F SN +L +V++ LY+L++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITTLYTLYM 410 >gi|157736057|ref|YP_001491522.1| NADH dehydrogenase subunit 4 [Zebrasoma flavescens] gi|157679382|dbj|BAF80437.1| NADH dehydrogenase subunit 4 [Zebrasoma flavescens] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/359 (36%), Positives = 204/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDSLSTPLLVLTCWLLPLMILASQNHTTLEPINRQRMYITLLTSLQIFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLVPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGTL 175 Query: 193 SIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + +S + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSNYIHLTTYSDKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I F +L +I A + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVILEPLTKELSYPFIIF-ALWGVIMAGTICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERAHSRTMVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A V ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMATWWFVGSLANLALPPLPNLMGELMIMTSLFNWSWWTLILTGAGTLITAGYSLYMF 412 >gi|299825757|ref|YP_003734686.1| NADH dehydrogenase subunit 4 [Lethenteron reissneri] gi|298103882|dbj|BAJ09379.1| NADH dehydrogenase subunit 4 [Lethenteron reissneri] Length = 458 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 139/360 (38%), Positives = 201/360 (55%), Gaps = 18/360 (5%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI-------QENFREYMIAFLVLESMVIGAFLS 131 L +D S L++L+ +L P I++S + Q+ +I +L + GA Sbjct: 57 LSIDQFSCPLIMLSCWLLPLMIMASQAHMKTEPITRQKTMIALLILLQILLCVTFGAS-- 114 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FYI FE +LIP +II WG ER+ A F YT S+ +L A++++ Sbjct: 115 -NLLMFYIAFETTLIPTLLIITRWGNQKERLTAGLYFLFYTLSASLPLLLALIMIQTHLN 173 Query: 191 TSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + SI DL +S P+S W WIA F +F IK+P++ FH WLP AHV+AP AGS+ Sbjct: 174 SLSIYVIPLSDLSLLSNTPWSEALW-WIASFLAFLIKMPLYIFHLWLPKAHVEAPIAGSM 232 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA I+LK+GGYG IR PL P + +++ +I S + + QTD+K +IAY Sbjct: 233 VLAAILLKLGGYGMIRMSSLFIPLTKDLATPFMI-IAMWGMIVTSSICLRQTDLKSMIAY 291 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GIF+ GA+ M++HGLVSS LF + Y+R HTR IF GL Sbjct: 292 SSVSHMGLVVAGIFTMTPWAWSGALAMMIAHGLVSSGLFCLANITYERTHTRSIFMNRGL 351 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P + ++ T ANM LP F+ EFL+I S+F SN +L + L+AL+SL Sbjct: 352 QALFPLMSFWWLMMTFANMALPPFPNFMAEFLIITSLFNWSNWTIILLGLSMTLTALFSL 411 >gi|138892897|ref|YP_001127600.1| NADH dehydrogenase subunit 4 [Ursus thibetanus formosanus] gi|117649948|gb|ABK54015.1| NADH dehydrogenase subunit 4 [Ursus thibetanus formosanus] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/381 (34%), Positives = 210/381 (55%), Gaps = 11/381 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P +++S + + + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLVLTTWLLPLMLMASQSHLSKETLTRKKLYITMLVLLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ T + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLHTQNNLGTLNFL 177 Query: 196 DL-YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 178 MMQYWIQPLPNSWSSIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITTLLDPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAVLIQTPWSYMGATALMVAHGLTSSMLFCLANSNYERVHSRTMILARGLQTLLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP T IGE V+++ F SN L ++++ALYS LY + Sbjct: 357 AWWLLASLTNLALPPTINLIGELFVVVATFSWSNITITLMGANIIITALYS--LYMLITT 414 Query: 434 GVSKC-EKVQQLKDLSLRERC 453 KC + ++ +K RE Sbjct: 415 QRGKCTDHIKSIKPSFTRENA 435 >gi|56692564|ref|YP_163981.1| NADH dehydrogenase subunit 4 [Anguilla bengalensis labiata] gi|56565466|dbj|BAD78136.1| NADH dehydrogenase subunits 4 [Anguilla bengalensis labiata] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMRFEPIGRQRSYITLLISLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPLTLSSWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTPSHII-GLEPSHTREHLLI 438 >gi|148922568|ref|YP_001293680.1| NADH dehydrogenase subunit 4 [Clupea pallasii] gi|148762544|dbj|BAF63993.1| NADH dehydrogenase subunit 4 [Clupea pallasii] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VL +L P IL+S + R ++ + L++ +I AF + + Sbjct: 56 YMAIDPLSAPLLVLACWLLPLMILASQNHTRTEPISRQRTFICLLISLQAFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +L+FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T Sbjct: 116 ILMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLAL--QNSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ + P ++ W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMIILNFNPPLALASWGDMMWWAACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRMSTILDPLTKEAAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 293 SHMGLVAGGILIQTPWGLTGALILMIAHGLVSSALFCLANTSYERTHSRTMALARGMQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A V +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTATWWFVANLANLALPPLPNLMGEVMIITTMFNWSPWTLILTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G E ++ L RE ++ Sbjct: 413 LMTQRGPVP-EHIKGLTPYHTREHLLI 438 >gi|222834569|ref|YP_002586786.1| NADH dehydrogenase subunit 4 [Eutaeniophorus festivus] gi|222051596|dbj|BAH15281.1| NADH dehydrogenase subunit 4 [Eutaeniophorus festivus] Length = 460 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 207/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P I++S + E R Y+ L+ +I AF + + Sbjct: 56 YMAADPLSAPLLVLTCWLLPLAIIASQNHMLEEPLARQRTYISLLTFLQLFLILAFTATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 LIMFYIMFEATLIPTLVIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTL 175 Query: 193 SIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L A ++ + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLPFSKAQQLGSYADKAW-WLGCLMAFLVKMPLYGIHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L II + + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIMVMLEPLTKELSYPFIIF-ALWGIIMTASICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTSWGFTGALTLMIAHGLASSALFCLANTNYERTHSRTMILARGLQILL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I ++F S ++ G V++A YSL+L+ Sbjct: 354 PLMASWWFIASLANLALPPLPNLMGELMIISALFNWSPWSLLITGTGTVITASYSLYLF 412 >gi|148543144|ref|YP_001260495.1| NADH dehydrogenase subunit 4 [Cuora aurocapitata] gi|57165277|gb|AAW34390.1| NADH dehydrogenase subunit 4 [Cuora aurocapitata] Length = 461 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/388 (33%), Positives = 208/388 (53%), Gaps = 12/388 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAF 129 F + +LGVD IS ++L+ +LTP I++ ++ R ++ ++L+ +I AF Sbjct: 51 FSNCYLGVDQISAPFLILSCWLTPMMIMAGQNNLIMEPTPRKRTFIFTTILLQISLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE++L+P VII WGG ER+ A F YT GS+ +L A++ Sbjct: 111 STTELIMFFIAFESTLLPTLVIITRWGGQMERLNAGTYFLFYTLIGSLPLLVALLTAQTY 170 Query: 189 KKTSSIIDL----YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T SI L Y P + W W+A F +F IK+P++ H WLP AHV+AP AGS Sbjct: 171 SGTLSICTLQLSTYPNMMNPCAHTMW-WLALFTAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L P P + L+L +I + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGIIRMTMTLAPPLKMLSYPFMM-LALWGLIMTGFICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+ HMG V + + GA+ M++HGL SS LF Y+R ++R + Sbjct: 289 YSSVGHMGLVIAAALTRTEWACTGAITLMIAHGLTSSMLFCLANTNYERTNSRTLLLARN 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ NM LP T +GE +I+S+F SNT ++ G +++A Y+ Sbjct: 349 MQLLLPLMGLWWFSASLTNMALPPTINLMGELTIIVSLFNWSNTTILMTGLGTLMAAAYT 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++ +G + + + RE Sbjct: 409 LYMLIITQWGETP-SHTKTIPPTHTREH 435 >gi|195661265|ref|YP_002117928.1| NADH dehydrogenase subunit 4 [Arctodus simus] gi|195182399|emb|CAQ68452.1| NADH dehydrogenase subunit 4 [Arctodus simus] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/390 (33%), Positives = 207/390 (53%), Gaps = 29/390 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLVLTTWLLPLMLMASQFHLSKETLTRKKLYITMLILLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLHT--QNNLGSLN 175 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 L +QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 176 FLM--------MQYWTQPLPNSWSSIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL + P + LSL +I S + + Q D+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLSPLTNSMAYPFMM-LSLWGMIMTSSICLRQADLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRIMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T IGE V+M+ F SNT VL ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNTTIVLMGTNIIITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SL++ G + ++ +K RE Sbjct: 407 SLYMLITTQRG-KYTDHIKNIKPSFTRENA 435 >gi|78499544|gb|ABB45797.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 207/392 (52%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQIPLSKETHNRKKLYITMLILLQLFLIMTFTGTELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLASVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|14587486|gb|AAK70526.1|AF224618_4 NADH dehydrogenase subunit 4 [Cheirogaleus major] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 213/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLMKETWTRKKSYLSMLIFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALI---YPQNSLGSLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + M+ + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 MATMTLCNQELSNSWSNGLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P+ ++Y A + L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPM-TKYLAYPLLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQSFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP + IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELLVIMASFSWSNITIILTGLNMLITALYSLYMLTVT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G L RE + + P+ +LT+ Sbjct: 415 QRG-KPTYHTHNLNPSLTRENTLMSMHMLPVILLTL 449 >gi|11055639|gb|AAG28186.1|AF304200_10 NADH4 [Sus scrofa] gi|11055667|gb|AAG28212.1|AF304202_10 NADH4 [Sus scrofa] gi|33320693|gb|AAQ05989.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320707|gb|AAQ06002.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320721|gb|AAQ06015.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320749|gb|AAQ06041.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320763|gb|AAQ06054.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320777|gb|AAQ06067.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320791|gb|AAQ06080.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320805|gb|AAQ06093.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320819|gb|AAQ06106.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320833|gb|AAQ06119.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320861|gb|AAQ06145.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320875|gb|AAQ06158.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320889|gb|AAQ06171.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320903|gb|AAQ06184.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320917|gb|AAQ06197.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320931|gb|AAQ06210.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320945|gb|AAQ06223.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|33320959|gb|AAQ06236.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|157144255|dbj|BAF80080.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 460 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 208/392 (53%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|157056663|gb|ABV02259.1| NADH dehydrogenase subunit 4 [Plecoglossus altivelis] gi|157056677|gb|ABV02272.1| NADH dehydrogenase subunit 4 [Plecoglossus altivelis] gi|157056705|gb|ABV02298.1| NADH dehydrogenase subunit 4 [Plecoglossus altivelis] gi|157056719|gb|ABV02311.1| NADH dehydrogenase subunit 4 [Plecoglossus altivelis] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 201/360 (55%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHISPEPVNRQRTYISLLASLQMFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ E T Sbjct: 116 IIMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNETGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+I L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITL--QYSQPLHLSAWGDKLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R +L L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMLMLDPLSKELAYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTAYERTHSRTMLLARGLQMA 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A V +AN+ LP +GE ++I ++F S + G +++A YSL+L+ Sbjct: 353 LPLTATWWFVANLANLALPPLPNLMGELVIITAMFNWSYWTIAITGVGTLITASYSLYLF 412 >gi|38707636|ref|NP_944707.1| NADH dehydrogenase subunit 4 [Platanista minor] gi|38602525|emb|CAD87984.1| NADH4 protein [Platanista minor] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 136/391 (34%), Positives = 202/391 (51%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ + L++ +I F + +++LF Sbjct: 59 DSLSTPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLITLQTTLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP ++I WG ER+ A F YT GS+ +L A+ + + T S+ Sbjct: 119 YIMFEATLIPTLILITRWGNQPERLNAGLYFLFYTLMGSLPLLVALTYL--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYWM------------WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LL--------LQYWTQPLSPSWSNTLTWLASMMAFLVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L PL P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITLTLNPLTEHMTYPFLI-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSSI+HM V I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSISHMALVITAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRIMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE LVI S F SN L +V++ALYS Sbjct: 348 LQTFLPLMASWWLLASLTNLALPPTINLIGELLVITSTFSWSNPTIFLMGMNIVITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + L RE ++ Sbjct: 408 LYMLITTQRG-KHTHHINNLIPSFTREHALM 437 >gi|302632660|ref|YP_003848756.1| NADH dehydrogenase subunit 4 [Cuora pani] gi|259122041|gb|ACV92115.1| NADH dehydrogenase subunit 4 [Cuora pani] Length = 461 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/388 (33%), Positives = 208/388 (53%), Gaps = 12/388 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAF 129 F + +LGVD IS ++L+ +LTP I++ ++ R ++ ++L+ +I AF Sbjct: 51 FSNCYLGVDQISAPFLILSCWLTPMMIMAGQNNLIMEPTPRKRTFIFTTILLQISLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE++L+P VII WGG ER+ A F YT GS+ +L A++ Sbjct: 111 STTELIMFFIAFESTLLPTLVIITRWGGQMERLNAGTYFLFYTLIGSLPLLVALLTAQTY 170 Query: 189 KKTSSIIDL----YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T SI L Y P + W W+A F +F IK+P++ H WLP AHV+AP AGS Sbjct: 171 SGTLSICTLQLSTYPNMMNPCAHTMW-WLALFTAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L P P + L+L +I + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGIIRMTMTLAPPLKMLSYPFMM-LALWGLIMTGFICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+ HMG V + + GA+ M++HGL SS LF Y+R ++R + Sbjct: 289 YSSVGHMGLVIAAALTRTEWACTGAITLMIAHGLTSSMLFCLANTNYERTNSRTLLLARN 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ NM LP T +GE +I+S+F SNT ++ G +++A Y+ Sbjct: 349 MQLLLPLMGLWWFSASLTNMALPPTINLMGELTIIVSLFNWSNTTILMTGLGTLMAAAYT 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++ +G + + + RE Sbjct: 409 LYMLIITQWGETP-SHTKTIPPTHTREH 435 >gi|16356991|ref|NP_443225.1| NADH dehydrogenase subunit 4 [Chauliodus sloani] gi|16266782|dbj|BAB69984.1| NADH dehydrogenase subunit 4 [Chauliodus sloani] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 142/402 (35%), Positives = 215/402 (53%), Gaps = 17/402 (4%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGA 128 +F +++L D +S L++L+ +L P IL+S I R Y+ L+ +I A Sbjct: 51 HFSNFYLASDPLSTPLLILSCWLLPLMILASQNHITPEPLARQRTYLSLLTSLQMFLILA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + ++++FYI FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 111 FGATEIIMFYIMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL-- 168 Query: 188 EKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +K T ++ L P + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 169 QKDTGTLSLLTLQYSRPLQLLSWGDKLWWAGCLIAFLVKMPLYGTHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG IR ++ L PL P I L+L II + + QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMIRMVIILNPLTELLALPFIT-LALWGIIMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI GV GA M++HGL SSALF Y+R H+R +F Sbjct: 288 AYSSVSHMGLVVGGILIQTPWGVAGATILMIAHGLASSALFCLANTSYERTHSRVMFLMR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G +P + ++AN+ LP +GE L+I S+F S +L G +++A Y Sbjct: 348 GTQTILPLMTTWWFLASLANLALPPLPNLMGELLIISSMFNWSYFTLILTGTGTLITAAY 407 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVL 461 SL L+ G + L+ RE ++ PIA+L Sbjct: 408 SLHLFLTTQRGPVP-NSILALEPTHTREHLLLALHLSPIALL 448 >gi|322422616|ref|YP_004222185.1| NADH dehydrogenase subunit 4 [Pollachius virens] gi|317423488|emb|CBY85638.1| NADH dehydrogenase 4 [Pollachius virens] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLML--QNSTG 173 Query: 193 SIIDL-----YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+ L + PF + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLIIPYTKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S +L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGVGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|256427328|ref|YP_003127090.1| NADH dehydrogenase subunit 4 [Siganus unimaculatus] gi|256353245|dbj|BAH97762.1| NADH dehydrogenase subunit 4 [Siganus unimaculatus] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 SPYMATDPLSTPLLVLTCWLLPLMILASQNHTTLEPVNRQRTYITLLTSLQIFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEVIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + P + + W W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQFSNPIPLTTYADKLW-WMACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I F +L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRILVVLEPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + T+AN+ LP +GE ++I S+ S +L G +++A YSL++ Sbjct: 352 ALPLMATWWFIGTLANLALPPLPNLMGELMIISSLLNWSWWTLLLTGVGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|38707558|ref|NP_944668.1| NADH dehydrogenase subunit 4 [Kogia breviceps] gi|38602483|emb|CAD87945.1| NADH4 protein [Kogia breviceps] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 209/391 (53%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + R+ Y+ ++L++ +I F + +++LF Sbjct: 59 DSLSTPLLMLTMWLFPLMLMASQSHLLKEPPIRKKLYITMLIMLQTSLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE +L+P +II WG +ER+ A F YT GS+ +L A+ + + T+ ++ Sbjct: 119 YIMFETTLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALTYL---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LLLQYWAEPLPASWSNTLMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L PL ++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITLLLNPL-TELMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V GI GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVITGILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN VL ++++ALYS Sbjct: 348 LQIFLPLMASWWLLASLTNLALPPTINLIGELFVVMSTFSWSNFTIVLMGTNILITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + L RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINNLTPSFTREHALM 437 >gi|110432595|gb|ABG73896.1| NADH dehydrogenase subunit 4 [Lepilemur seali] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 207/363 (57%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTTWLFPLTVMASQYHLTKESWERKKHFLSTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L V +C + + + Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLL---VALCHIQDSMGTLS 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPSSWSNYLLWTACIMAFMVKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R ++ L PL +++ A + L +I SL+ + QTD+K LIAYSSI+HM Sbjct: 236 LKLGGYGMMRIIMILNPL-TKFMAYPFLMMCLWGMIMTSLICLRQTDLKSLIAYSSISHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 VT+ I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVTMAILIQTPWSLMGATTLMVAHGLTSSVLFCLANSNYERIHSRTMLPARGLQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ +++N+ LP + IGE LV M+ F SNT +L ++++A YSL++ Sbjct: 355 MNTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLITATYSLYMLTTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|213136273|gb|ACJ43813.1| NADH dehydrogenase subunit 4 [Pleurodeles poireti] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 133/381 (34%), Positives = 211/381 (55%), Gaps = 12/381 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 + ++ VD IS L +LT +L P L+S ++ N R Y+I +L+ +I AF Sbjct: 52 TNLYMTVDPISSPLTILTCWLLPLMTLASQNHLKTNPLSRQRTYLIMLALLQMSLITAFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 S +++LFYI FE +LIP VII WG +ER+ A F YT GS+ +L A++V+ Sbjct: 112 STELILFYIAFETTLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLVLQTTL 171 Query: 190 KTSSI--IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S+ I+L + +W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLSLTLINLMEPVMVYNNSNKILWLACLLAFMVKMPLYGVHLWLPKAHVEAPIAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L P+ + P L+L ++ SL+ + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGIIRVTTILTPMTKELSYP-FMILALWGVVMTSLICLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V I + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 291 VSHMGLVIAAIMIQTPWSMTGAIILMISHGLISSALFCLANLNYERTHSRTLLLTRGAQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++NM LP + GE +++S+F S ++ G +++A Y+L++ Sbjct: 351 ILPLMATWWLLTNLSNMALPPSMNLWGELTIMVSLFNWSPWTILITGAGTLITASYTLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLS 448 + + + Q L LS Sbjct: 411 F----LMTQRGQTPQHLNSLS 427 >gi|312233373|ref|YP_004021584.1| NADH dehydrogenase subunit 4 [Sus scrofa taiwanensis] gi|83779141|gb|ABC47385.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|125213072|dbj|BAF46412.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315438|gb|ABP62998.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315452|gb|ABP63011.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315466|gb|ABP63024.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315480|gb|ABP63037.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315494|gb|ABP63050.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315508|gb|ABP63063.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315522|gb|ABP63076.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315536|gb|ABP63089.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315550|gb|ABP63102.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315564|gb|ABP63115.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315578|gb|ABP63128.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315592|gb|ABP63141.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315606|gb|ABP63154.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315620|gb|ABP63167.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315634|gb|ABP63180.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315648|gb|ABP63193.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315662|gb|ABP63206.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315676|gb|ABP63219.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315690|gb|ABP63232.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315704|gb|ABP63245.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315718|gb|ABP63258.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315732|gb|ABP63271.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315746|gb|ABP63284.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315760|gb|ABP63297.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|145315800|gb|ABP63334.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|157056545|gb|ABV02176.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|225580662|gb|ABE02597.2| NADH dehydrogenase subunit 4 [Sus scrofa] gi|238625878|gb|ACR48205.1| NADH dehydrogenase subunit 4 [Sus scrofa] gi|269812094|gb|ACZ44406.1| NADH dehydrogenase subunit 4 [Sus scrofa taiwanensis] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 208/392 (53%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|21622589|emb|CAD21715.2| NADH dehydrogenase subunit 4 [Odobenus rosmarus rosmarus] Length = 484 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/383 (33%), Positives = 208/383 (54%), Gaps = 13/383 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDML 135 D +S L+ LTT+L P +++S + + + Y+ + L+ ++I F + +++ Sbjct: 57 STDSLSTPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYITMLISLQLLLIMTFTATELI 116 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ M T ++ Sbjct: 117 MFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLIALLHMQNNMGTLNL 176 Query: 195 IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + M++ + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LVTQYMTQT--LLDSWSNIFLWLACMTAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 294 MALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRIMILTRGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A+ ++ ++ N+ LP T IGE LV+++ F SN L ++++ALYSL++ Sbjct: 354 LMAMWWLLASLTNLALPPTINLIGELLVVITSFSWSNITITLMGANIIITALYSLYMLTM 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G ++ +K RE Sbjct: 414 TQRG-KYTHHIKNIKPSFTRENA 435 >gi|327492677|ref|YP_004347570.1| NADH dehydrogenase subunit 4 [Lagocephalus laevigatus] gi|327392584|dbj|BAK10012.1| NADH dehydrogenase subunit 4 [Lagocephalus laevigatus] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 205/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D IS L+VL+ +L P I +S ++ R Y+ L+ +I AF + + Sbjct: 56 YMATDPISAPLLVLSCWLLPIMISASQSHTEKEPISRQRAYISLLTSLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ K + Sbjct: 116 MIMFYVMFEATLIPTLILITRWGNQTERLSAGTYFLFYTLAGSLPLLIALLLLQNTKGSL 175 Query: 193 SIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLAYSEPLLLTTYASKIW-WTACILAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ + PL + P I L+L II S + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRILVTMEPLTKEMVYPFIV-LALWGIIMTSSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVSGILIQTPWGSTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLTRGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMAAWWFIASLANLALPPLPNLMGELMILTSLFNWSWWTIILTGLGTLITASYSLYMF 412 >gi|131839184|ref|YP_001096037.1| NADH dehydrogenase subunit 4 [Procyon lotor] gi|130381981|dbj|BAF49012.1| NADH dehydrogenase subunit 4 [Procyon lotor] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/383 (34%), Positives = 205/383 (53%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P + +S K + Y+ + L+ +I F + ++++ Sbjct: 58 TDSLSAPLLVLTTWLLPLMLTASQFHLAKETLTRKKLYITMLITLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLLPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALL---WIQNDLGTL 174 Query: 196 D-LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L A + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 NFLIAQYWIQHTSSTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L P S + A LSL +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRITVLLNPTMS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + GA M++HGL SSALF Y+R H+R + GL +P Sbjct: 294 MALVIAAVLIQTPWSYTGATVLMVAHGLTSSALFCLANSNYERTHSRTMILTRGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ +M N+ LP + IGE V+M+ F SN VL ++++ALY+L++ Sbjct: 354 LMAAWWLLASMTNLALPPSINLIGELFVVMASFSWSNMTIVLMGTNIIITALYTLYMLIM 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G S + ++ +K RE Sbjct: 414 TQRGKS-TQHIKNIKPSFTRENA 435 >gi|119360689|ref|YP_913623.1| NADH dehydrogenase subunit 4 [Barbatula toni] gi|119225327|dbj|BAF41684.1| NADH dehydrogenase subunit 4 [Barbatula toni] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ ++ AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHIYPEPINRQRLYITLLASLQTFLVMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IVMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQTTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSQPLTLNSWGHNIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II A + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMAGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLASSMLFCLANTAYERTHSRTMVLTRGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A+ +AN+ LP +GE ++I ++F S +L G +++A YSL+L+ Sbjct: 353 FPLTAMWWFTANLANLALPPLPNLMGELMIITTLFSWSPWTIMLTGAGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + ++ L RE ++ Sbjct: 413 LMTQRGPTP-NHIKGLSPFHTREHLLM 438 >gi|226463981|ref|YP_002734938.1| NADH dehydrogenase subunit 4 [Chamaeleo arabicus] gi|124055102|gb|ABM89717.1| NADH dehydrogenase subunit 4 [Chamaeleo arabicus] Length = 449 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 211/379 (55%), Gaps = 13/379 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIGAFLSLD 133 +L +D IS L+ L+ +L P IL+S + Q R ++ L++++ A S + Sbjct: 55 YLSIDQISAPLLTLSYWLLPIAILASQNHLKHTTQMQTRMFLTCLTSLQTLLTLALSSTN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LF+I FEA+LIP +II WG ER+ A F YT S+ +L A+++M ++ Sbjct: 115 LILFFIMFEATLIPTMIIITRWGSQKERLTAGMYFMFYTLISSMPLLIALLMMNYQMNNL 174 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +II + +K P +I +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 175 NIILMPTTNK-PNTI---LWLACTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 230 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + P+ L + P I ++L +I SL+ + Q D+K LIAYSS++HMG Sbjct: 231 KLGGYGMMR-ISPMLCLTKTLYYPFII-MALWGMIMTSLICLRQPDLKSLIAYSSVSHMG 288 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V S + GAM M++HG+ SS LF ++Y+R HTR + G+ +P Sbjct: 289 LVVAATMIQTPSSLTGAMILMVAHGITSSMLFCLANMMYERTHTRTLTMMQGIQTTLPLM 348 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ + NM +P T +GE ++ +VF S +L ++A+YS++++ + Sbjct: 349 TAFWLMANLTNMAIPPTINLMGEIMITSTVFNWSPPTLILTGSAATITAIYSMYMFSAIQ 408 Query: 433 FGVSKCEKVQQLKDLSLRE 451 G K +K + RE Sbjct: 409 QG--KTQKDMMIYPPQTRE 425 >gi|108773027|ref|YP_636079.1| NADH dehydrogenase subunit 4 [Dorosoma cepedianum] gi|105873607|gb|ABF74835.1| NADH dehydrogenase subunit 4 [Dorosoma cepedianum] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 203/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++ VD +S L+VLT +L P IL+S +E R Y+ L++ +I AF + Sbjct: 54 NTYMAVDPLSAPLLVLTCWLLPLMILASQNHTREEPISRQRMYISLLASLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 114 TEIIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTL--QST 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGSLSMMTLNFGQPLTLMSWGDKIWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMIRMTTILDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE ++I ++F S VL G +++A YSL+ Sbjct: 351 MLFPLTATWWFIANLANLALPPLPNLMGEVMIITTMFNWSPWTLVLTGAGTLITAGYSLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|262399631|gb|ACY65592.1| NADH dehydrogenase subunit 4 [Pan troglodytes verus] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 136/403 (33%), Positives = 220/403 (54%), Gaps = 19/403 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LT +L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSLSFSSDPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + D+++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ + Sbjct: 112 ATDLIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALI---YTH 168 Query: 190 KTSSIIDLYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T +++ ++ + W MW+A+ +F +K+P++ H WLP AHV+AP AGS Sbjct: 169 NTLGSLNILLLTLTTQELSNTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L PL P + LSL +I S + + QTD+K LIA Sbjct: 229 MMLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V I GA+ M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYS Sbjct: 348 LQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 L+++ +G S + +K RE +++ PI +L++ Sbjct: 408 LYMFTTTQWG-SLTHHINNMKPSFTRENTLMFLHLSPILLLSL 449 >gi|197311237|ref|YP_002154539.1| NADH dehydrogenase subunit 4 [Odontesthes sp. Odsp-001] gi|197304284|dbj|BAG69242.1| NADH dehydrogenase subunit 4 [Odontesthes sp. Odsp-001] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 204/366 (55%), Gaps = 16/366 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNSYMATDPLSTPLLVLTCWLLPLMILASQNHTSAEPVNRQRTYVTLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIL--- 168 Query: 189 KKTSSIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++ + L + P ++ + W W A +F +K+P++ H WLP AHV+AP A Sbjct: 169 QNSAGTLSLLTLQYAPLIHLTSYADKLW-WAACLLAFLVKMPLYGAHLWLPKAHVEAPIA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG IR + L PL + P I F +L II + + QTD+K L Sbjct: 228 GSMILAAVLLKLGGYGMIRMMTMLEPLTKELSYPFIVF-ALWGIIMTGSICLRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 287 IAYSSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLA 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P + ++AN+ LP +GE ++I S+F S +L G +++A Sbjct: 347 RGLQMVLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFGWSAWTLILTGTGTLITAG 406 Query: 423 YSLWLY 428 YSL+++ Sbjct: 407 YSLYMF 412 >gi|51339533|gb|AAU00527.1| NADH dehydrogenase subunit 4 [Procyon lotor] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 131/383 (34%), Positives = 206/383 (53%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P + +S K + Y+ + L+ +I F + ++++ Sbjct: 58 TDSLSAPLLVLTTWLLPLMLTASQFHLAKETLTRKKLYITMLITLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLLPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALL---WIQNDLGTL 174 Query: 196 D-LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L A + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 175 NFLIAQYWIQHTSSTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L P S + A LSL +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRITVLLNPTMS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + GA M++HGL SSALF Y+R+H+R + GL +P Sbjct: 294 MALVIAAVLIQTPWSYTGATVLMVAHGLTSSALFCLANSNYERIHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ +M N+ LP + IGE V+M+ F SN VL ++++ALY+L++ Sbjct: 354 LMAAWWLLASMTNLALPPSINLIGELFVVMASFSWSNMTIVLMGTNIIITALYTLYMLIM 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G S + ++ +K RE Sbjct: 414 TQRGKS-TQHIKNIKPSFTRENA 435 >gi|256532663|gb|ACU81578.1| NADH dehydrogenase subunit 4 [Bos grunniens] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPMHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T +GE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLVGELFVMMSTFSWSNITIILMGMNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|161868014|ref|YP_001600227.1| NADH dehydrogenase subunit 4 [Arctogadus glacialis] gi|161725007|emb|CAP46980.1| NADH dehydrogenase 4 [Arctogadus glacialis] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 205/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYKRTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMXTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|322422333|ref|YP_004221767.1| NADH dehydrogenase subunit 4 [Castor fiber] gi|321398272|emb|CBX20865.1| nadh dehydrogenase subunit 4 [Castor fiber] gi|321398285|emb|CBX20877.1| nadh dehydrogenase subunit 4 [Castor fiber] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 121/357 (33%), Positives = 203/357 (56%), Gaps = 14/357 (3%) Query: 88 LVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 L++LT +L P I++S + + + + Y+ ++L++++I F + +++LFYI FEA Sbjct: 65 LLILTAWLLPLMIMASQQHMNKEPVGRKKMYITMLVLLQTLLIMTFTATELILFYILFEA 124 Query: 144 SLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK 202 +LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++L+ ++ Sbjct: 125 TLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYL---QNSLGSLNLHILNN 181 Query: 203 FPFSIQY-W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 + + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGY Sbjct: 182 YSEQLNLSWSNDLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGY 241 Query: 258 GCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 G +R L P+ + P + LSL ++ S + + QTD+K LIAYSS++HM V + Sbjct: 242 GMMRITALLSPITNHMMYPFML-LSLWGMLMTSSICLRQTDLKSLIAYSSVSHMALVIVA 300 Query: 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMM 377 I GA M++HGL SS LF Y+R+H+R + GL +P A+ + Sbjct: 301 ILIQSPWSFMGATALMVAHGLTSSVLFCLANTNYERVHSRTMLLARGLQTMLPLMALWWL 360 Query: 378 VFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ N+ LP T IGE ++I S F SN +L +++ALY+L++ G Sbjct: 361 TASLTNLALPPTINLIGELMIIASSFSWSNFTILLMGANTLITALYTLYMLTTTQRG 417 >gi|25057704|ref|NP_739941.1| NADH dehydrogenase subunit 4 [Parazen pacificus] gi|25005911|dbj|BAC23537.1| NADH dehydrogenase subunit 4 [Parazen pacificus] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 204/359 (56%), Gaps = 12/359 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 +G D +S L++LT +L P IL+S + R Y++ L+ +I AF + ++ Sbjct: 57 MGTDPLSTPLLILTCWLLPLMILASQHHMATEPLSRQRTYIMLLSSLQFFLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FYI FEA+LIP +II WG ER+ A F YT GS+ +L A++++ T S Sbjct: 117 LMFYIMFEATLIPTLIIITRWGNQKERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLS 176 Query: 194 IIDLYAMSKFP----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 ++ + + P +S W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 MLTM-QYNDMPLTESWSQNLW-WAGCMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIMVTLNPLSKEMVYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R+H+R + G+ M Sbjct: 294 HMGLVAGGIMIQTPWGFTGALILMIAHGLASSALFCLANTNYERMHSRTMLLARGMQMVM 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A ++AN+ LP +GE ++I S+F S +L G +++A YSL+L+ Sbjct: 354 PLMATWWFTASLANLALPPLPNLMGEIMIISSLFNWSWLTIILTGTGTLITAGYSLYLF 412 >gi|330470205|ref|YP_004407948.1| proton-translocating NADH-quinone oxidoreductase subunit M [Verrucosispora maris AB-18-032] gi|328813176|gb|AEB47348.1| proton-translocating NADH-quinone oxidoreductase, chain M [Verrucosispora maris AB-18-032] Length = 510 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 158/423 (37%), Positives = 243/423 (57%), Gaps = 14/423 (3%) Query: 77 YHLGVDGISILLVVLTTFLTPFCI-LSSWK-SIQENFREYMIAFLVLESMVIGAFLSLDM 134 +HLGVDGIS LVVLT LT C + W+ + R + LV+E ++G FL+LD+ Sbjct: 85 FHLGVDGISWPLVVLTALLTLLCCGYTCWRVPAGGSGRALVALLLVVEVGILGTFLALDL 144 Query: 135 LLFYIFFEASLIPMFVIIGVWGGSER--------IYAAYKFFLYTFFGSIFMLFAIVVMC 186 +LF++FFE L+PM+ II WGG AA KF LYT FGS+ +L + V+ Sbjct: 145 VLFFLFFEIVLLPMYAIIVGWGGDGTDPAAVAARRRAARKFALYTLFGSVLLLVGVYVVV 204 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T+ I+ L + Q + +FA+K P++P H+WLP+AH QAPT GSV Sbjct: 205 AAAGTADIVALTGGNGLARGTQLAAFTLLAVAFAVKSPLWPLHSWLPDAHTQAPTVGSVL 264 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAG++LKMG YG IR + + P +++ APV+ L++ AI+ SLV + QT++K+LIAYS Sbjct: 265 LAGVLLKMGTYGLIRVAVGVAPEGARWAAPVLGVLAVAAILIGSLVCLAQTELKRLIAYS 324 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG+V +GI + +G++ A+ ++HG+++ LFF G I DR HT + GL Sbjct: 325 SVGHMGFVLLGIATLTATGIQAALIGNVAHGIITGLLFFLAGAIKDRTHTGALRELSGLR 384 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSAL 422 PR + ++ +A++GLPG +GF GE +++ + T+AVLA+FG L+A Sbjct: 385 ETAPRLSGLLAFAAVASLGLPGLAGFWGEAFAVVAAVEVGGALWITLAVLAAFGGALTAA 444 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 Y L L R+V G + L+ E P+ +L + G+ P + P+++ Sbjct: 445 YLLRLLRQVTHGRATPAVAGLKPGLAGAEVAAWAPLVLLALAVGLAPTLVLGVAEAPVTA 504 Query: 483 IIE 485 ++E Sbjct: 505 LVE 507 >gi|56692508|ref|YP_164007.1| NADH dehydrogenase subunit 4 [Anguilla obscura] gi|56565494|dbj|BAD78162.1| NADH dehydrogenase subunits 4 [Anguilla obscura] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMRLEPINRQRSYITLLISLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPLVLSSWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTP-NHIIGLEPSHTREHLLI 438 >gi|294959448|gb|ADF48985.1| NADH dehydrogenase subunit 4 [Bison bison] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 200/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K I + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKEILTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPVHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|264681221|ref|YP_003289139.1| NADH dehydrogenase subunit 4 [Rastrelliger brachysoma] gi|169809402|gb|ACA84176.1| NADH dehydrogenase subunit 4 [Rastrelliger brachysoma] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 206/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQE---NFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + QE R Y+ L+ +I AF + Sbjct: 54 NLYLATDLLSTPLLVLTCWLLPLMILASQNHTAQEPVNRQRMYITLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L+ + S + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLHYSTPLQLSSYADKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRIMIMLDPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S+ L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSHWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|213136021|gb|ACJ43579.1| NADH dehydrogenase subunit 4 [Cynops orientalis] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 135/394 (34%), Positives = 218/394 (55%), Gaps = 19/394 (4%) Query: 50 FVWSVFDKGRSSFQMIEYYHWIDY------FCSYHLGVDGISILLVVLTTFLTPFCILSS 103 ++W+ F S M+ W++ F + + VD S L+VLT +L P L+S Sbjct: 22 WLWTHFTVNSSIIAMMSLT-WLNLPFEFSNFTNVLMSVDQTSSPLLVLTCWLLPLMTLAS 80 Query: 104 WKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS- 158 K ++ N R Y++ +L++ +I AF S ++++FYI FE +LIP +II WG Sbjct: 81 QKHLKVNSLPRQRTYLVMLTLLQASLIIAFSSTELIMFYIAFETTLIPTLIIITRWGNQV 140 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIA 214 ER+ A F YT GS+ +L A++V+ + S+ + M P +Q + +W+A Sbjct: 141 ERLNAGTYFLFYTLAGSLPLLIALLVLQNSLGSLSLTLINIME--PMVLQSYSNKTLWLA 198 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ GYG IR L P+A + Sbjct: 199 CLLAFMVKMPLYGAHLWLPKAHVEAPVAGSMILAAVLLKLVGYGIIRTTTILAPMAKEMS 258 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P L+L ++ SL+ M QTD+K LIAYSS++HMG V I GA+ M+ Sbjct: 259 YP-FMILALWGVVMTSLICMRQTDLKSLIAYSSVSHMGLVIAAIMIQTPWSTTGAVILMI 317 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGL+SSALF + Y+R H+R + G +P A ++ ++NM LP + G Sbjct: 318 SHGLISSALFCLANMNYERSHSRTLLLVRGAQATLPLMATWWLITNLSNMALPPSMNLWG 377 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 E +++S+F S ++ G +++A Y+L+++ Sbjct: 378 ELTIMVSLFNWSPWTILITGAGALITASYTLYIF 411 >gi|226463825|ref|YP_002727932.1| NADH dehydrogenase subunit 4 [Chamaeleo chamaeleon] gi|124055172|gb|ABM89782.1| NADH dehydrogenase subunit 4 [Chamaeleo chamaeleon] Length = 450 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/380 (33%), Positives = 209/380 (55%), Gaps = 14/380 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIGAFLSLD 133 +L VD IS L+ L+ +L P ILSS S Q R + + L+ ++ + S + Sbjct: 55 YLSVDQISAPLLTLSYWLLPIAILSSQNHLKYSTQTQTRMFFMCLTTLQMLLTLSLSSTN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LF+I FEA+LIP +II WG ER+ A F YT S+ +L A+++M ++ Sbjct: 115 IILFFIMFEATLIPTMIIITRWGSQKERLTAGMYFMFYTLISSMPLLIALLMMNYQMDNL 174 Query: 193 SIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + L M+ + P +I MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 175 NTM-LTPMTTYKPNTI---MWLACTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAIL 230 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + P+ L + P I ++L +I SL+ + Q D+K LIAYSS++HM Sbjct: 231 LKLGGYGMMR-ISPMLCLTKTLYYPFII-MALWGMIMTSLICLRQPDLKSLIAYSSVSHM 288 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V S + GAM M++HG+ SS LF ++Y+R HTR + G+ +P Sbjct: 289 GLVITATMIQTPSSLSGAMILMVAHGITSSMLFCLANMMYERTHTRTLAMMQGIQTTLPL 348 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + NM +P T +GE + ++F S +L ++A+YS++++ + Sbjct: 349 VTAFWLIANLTNMAIPPTINLMGEITITTTMFNWSPPTLILTGSAATITAIYSMYMFSAI 408 Query: 432 VFGVSKCEKVQQLKDLSLRE 451 G K +K + RE Sbjct: 409 QQG--KTQKDMMISPPQTRE 426 >gi|157736197|ref|YP_001491288.1| NADH dehydrogenase subunit 4 [Diagramma pictum] gi|139000612|dbj|BAF51812.1| NADH dehydrogenase subunit 4 [Diagramma picta] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 204/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S ++ D +S L+VLT +L P IL+S R Y++ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLVLTCWLLPLMILASQNHTASEPINRQRTYIMLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEIIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L + P ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYSNPLPLITYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMLVMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|295641267|gb|ADG22803.1| NADH dehydrogenase subunit 4 [Nasua nasua] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 210/384 (54%), Gaps = 17/384 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P +++S K + Y+ + L+ ++I F + ++++ Sbjct: 58 TDSLSAPLLVLTTWLLPLMLMASQFHLMKETPTRKKLYITMLITLQLLLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLLPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLIALL---WAQNNLGTL 174 Query: 196 DLYAMSKF---PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + + M+++ P S + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 N-FLMAQYWIKPMSTSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R + L P + + A LSL +I S + + QTD+K LIAYSS++ Sbjct: 234 VLLKLGGYGMMRVTIMLNP-TTGFMAYPFMMLSLWGMIMTSSMCLRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HM V + GA M++HGL SS LF Y+R+H+R + GL + Sbjct: 293 HMALVIAAVLIQTPWSYAGATALMIAHGLTSSMLFCLANSNYERIHSRTMIIARGLQTLL 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALY+L++ Sbjct: 353 PLMAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNFTIILMGTNIIITALYTLYMLI 412 Query: 430 KVVFGVSKCEKVQQLKDLSLRERC 453 G ++ +K RE Sbjct: 413 TTQHG-KPTYHIKNIKPSFTRENT 435 >gi|270267374|ref|YP_003331077.1| NADH dehydrogenase subunit 4 [Leptoderma retropinna] gi|269994288|dbj|BAI50282.1| NADH dehydrogenase subunit 4 [Leptoderma retropinna] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 213/399 (53%), Gaps = 17/399 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLAADPLSTPLLVLTCWLLPLMILASQNHISPEPVNRQRMYISLLASLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P S+ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTLQYSQPLSLSSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFAANLANLALPPLPNLMGEIMIIATMFNWSPWTLALTGLGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 G + + L RE ++ PI +LT Sbjct: 413 LMSQRGPTPAHMI-GLTPYHTREHLLMTLHLIPILLLTT 450 >gi|165932461|ref|YP_001650745.1| NADH dehydrogenase subunit 4 [Macroramphosus scolopax] gi|154758872|dbj|BAF75012.1| NADH dehydrogenase subunit 4 [Macroramphosus scolopax] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 139/394 (35%), Positives = 213/394 (54%), Gaps = 23/394 (5%) Query: 43 INFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILS 102 I F L++ S D G SS S +L D +S L+VLT +L P IL+ Sbjct: 34 IAFASLLWLSSAMDTGWSSL-------------SSYLATDPLSTPLLVLTCWLLPLMILA 80 Query: 103 SWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG- 157 S ++ R Y+ L+ +I AF + ++++FY+ FEA+LIP VII WG Sbjct: 81 SQNHTRQEPINRQRAYITLLASLQIFLIMAFGATEIIMFYVMFEATLIPTLVIITRWGNQ 140 Query: 158 SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI---QYWMWIA 214 +ER+ A F YT GS+ +L A++++ T SI+ L + S + W W Sbjct: 141 AERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGTLSILTLQYANPIALSSYGDKLW-WAG 199 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R ++ L PL + Sbjct: 200 CLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVLLKLGGYGMMRMMIVLEPLTKELS 259 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P I F +L +I + + QTD+K LIAYSS++HMG V GI G GA+ M+ Sbjct: 260 YPFIVF-ALWGVIMTGSICLRQTDMKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMI 318 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 +HGL SSALF Y+R H+R + G+ +P + ++AN+ LP +G Sbjct: 319 AHGLTSSALFCLANTSYERTHSRTMVLARGMQMILPLMTAWWFIASLANLALPPLPNLMG 378 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 E ++I S++ S +L G +++A YSL+L+ Sbjct: 379 ELMIITSLYNWSWPTLLLTGAGTLITAGYSLYLF 412 >gi|115494603|ref|YP_778782.1| NADH dehydrogenase subunit 4 [Mirounga leonina] gi|115344923|emb|CAJ56971.1| NADH dehydrogenase subunit 4 [Mirounga leonina] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 130/384 (33%), Positives = 210/384 (54%), Gaps = 13/384 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGMYFLFYTLVGSLPLLVALLFIQNNMGTLNFL 177 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L +++ P + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 178 MLQLLTQ-PM-LNSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL + P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRMTMMLNPLTNSMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQMLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 355 MAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILTGTNIIITALYSLYMLITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G V+ +K RE ++ Sbjct: 415 QRG-KFTHHVKNIKPSFTRENALM 437 >gi|109689661|ref|YP_659534.1| NADH dehydrogenase subunit 4 [Bathygadus antrodes] gi|109452331|dbj|BAE96367.1| NADH dehydrogenase subunit 4 [Bathygadus antrodes] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/356 (35%), Positives = 204/356 (57%), Gaps = 10/356 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VL+ +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSSPLLVLSCWLLPLMILASQNHLYSEPMNRQRVYITLLTSLQLFLIAAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP +II WG +ER+ A F YT S+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLIITRWGNQTERLNAGVYFLFYTLASSLPLLVALLMLQDSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ ++ + FPF + W W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIHYSKPLVTFPFGGKIW-WVACMFAFLVKMPLYGMHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L P++ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIMLSPISQEMIYPFIA-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G G++ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGSLTLMIAHGLASSALFCLANTNYERTHSRTMLLARGLQTAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P A + ++AN+ LP +GE +++ S+F S +L G +++A YSL Sbjct: 354 PLMATWWFIASLANLALPPLPNLMGELMILTSLFNWSMWTLILTGAGTLITAAYSL 409 >gi|222839841|ref|YP_002587056.1| NADH dehydrogenase subunit 4 [Tursiops aduncus] gi|170026965|gb|ACB06019.1| NADH dehydrogenase subunit 4 [Tursiops aduncus] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 209/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L+ ++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLMKEPLARKKLYITMLVLLQVLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGVNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|157056530|gb|ABV02162.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 210/392 (53%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A F +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACFMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLASVLLKLGGYGMMRITTIVNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVMLAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A+ ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAMWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMHMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|11055653|gb|AAG28199.1|AF304201_10 NADH4 [Sus scrofa] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 208/392 (53%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|326536072|ref|YP_004300506.1| NADH dehydrogenase subunit 4 [Osmerus mordax] gi|311788487|gb|ADQ12870.1| NADH dehydrogenase subunit 4 [Osmerus mordax] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 202/362 (55%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S I R Y+ L+ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLSCWLLPLMILASQNHISPEPINRQRTYISLMASLQMFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ E Sbjct: 114 TEIIMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNETG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+I L P + W W+ +F +K+P++ H WLP AHV+AP GS+ Sbjct: 174 TLSLITL--QYSQPLQLSTWGDKLWWVGCLLAFLVKMPLYGVHLWLPKAHVEAPIRGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R +L L PL+ + P I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMLMLDPLSKELAYPCIV-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTAYERTHSRTMLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + +AN+ LP +GE ++I ++F S V+ G +++A YSL+ Sbjct: 351 MVLPLMTTWWFIANLANLALPPLPNLMGELMIITAMFNWSYWTLVITGVGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|147917536|gb|ABQ52641.1| NADH dehydrogenase subunit 4 [Equus caballus] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 205/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ +L++ +I F + +++ F Sbjct: 59 DPLSAPLLVLTTWLLPLMLMASQHHLSKEPLIRKKLYITMLTMLQTFLIMTFTATELISF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ SI + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALI---------SIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L F IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 LTGSLNF-LLIQYWNQALPDSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L P S + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTMLNPQTS-FMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE V+MS F SN +L + ++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPSINLIGELFVVMSSFSWSNITIILMGTNITITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINSIKPSFTRENALM 437 >gi|153581848|emb|CAO79769.1| NADH dehydrogenase 4 [Reinhardtius hippoglossoides] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 130/358 (36%), Positives = 204/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K R Y+ L+ +I AF + ++ Sbjct: 57 MATDSLSTPLLVLTCWLLPLMILASQKHTASEPLGRQRMYITLLASLQFFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 VMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTSGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L+ ++ ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLHYTDPLTLSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P I F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMTMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI + G+ GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQLPWGLTGALTLMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQVALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 355 LMATWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMF 412 >gi|108767250|ref|YP_636027.1| NADH dehydrogenase subunit 4 [Cyprinella spiloptera] gi|105873551|gb|ABF74783.1| NADH dehydrogenase subunit 4 [Cyprinella spiloptera] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 213/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P +L+S I + R Y+ L++ +I AF + Sbjct: 54 SPYLATDPLSTPLLVLTCWLLPLMLLASQNHINLHPIVRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQTERLDAGTYFLFYTLVGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLIIQYSPPVLVGSWSHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILVQTPWGFTGAIILMIAHGLVSSMLFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFVANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGLGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + + + RE ++ Sbjct: 411 MFLMSQRGPTP-HHILSITPVHTREHLLM 438 >gi|41353105|ref|NP_958774.1| NADH dehydrogenase subunit 4 [Ochotona princeps] gi|41016106|emb|CAD60956.1| NADH dehydrogenase subunit 4 [Ochotona princeps] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 209/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QEN--FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ LVL + ++ F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKENPPRKKLFISMLVLLQIFLVMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLVIITRWGNQAERLNAGTYFLFYTLMGSLPLLVALLYIHNTSGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLTNLALPPSINLIGELFVIISSFSWSNLTIILAGINMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|280978233|ref|YP_003345173.1| NADH dehydrogenase subunit 4 [Muraenesox bagio] gi|271280462|dbj|BAI53298.1| NADH dehydrogenase subunit 4 [Muraenesox bagio] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/388 (34%), Positives = 214/388 (55%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S + R ++I + L+ ++ AF S Sbjct: 54 NLYLATDPLSTPLLVLSCWLLPLMILASQNHMMTEPLIRQRSFIILLITLQILLTLAFSS 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ M Sbjct: 114 TEIMMFYVMFEATLIPTLIVITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLFMQNNLG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + M+ + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTIQYTNNMNMPSWGEKIW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL P I L+L II + + QTD+K +IAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLEPLTKDLAYPFII-LALWGIIMTGTICLRQTDLKSMIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF + Y+R+H R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANMNYERVHGRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ILPLMAAWWFILNLANLALPPLPNLMGELMIITSMFNWSYWSILLTGLGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L+ RE +V Sbjct: 412 FLITQRGPAPAHML-ALEPSHTREHLLV 438 >gi|256532509|gb|ACU81435.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256532761|gb|ACU81669.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533097|gb|ACU81981.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533167|gb|ACU82046.1| NADH dehydrogenase subunit 4 [Bos grunniens] gi|256533279|gb|ACU82150.1| NADH dehydrogenase subunit 4 [Bos grunniens] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+ + I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVAL---------TYIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPMHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|283825448|gb|ADB43199.1| NADH dehydrogenase subunit 4 [Oreochromis niloticus] gi|291002183|gb|ADD71187.1| NADH dehydrogenase subunit 4 [Oreochromis niloticus] gi|291002225|gb|ADD71226.1| NADH dehydrogenase subunit 4 [Oreochromis niloticus] gi|291002267|gb|ADD71265.1| NADH dehydrogenase subunit 4 [Oreochromis sp. 'red tilapia'] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S ++ D +S L+ LT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLALTCWLLPLMILASQNHTAPEPISRQRTYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNN 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L +M F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYTPSMQLSSFADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTSWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFHWSWWTIALTGGGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|162423277|gb|ABX89418.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 208/392 (53%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN ++ ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIIVMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + LK RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNLKPSFTRENALM 437 >gi|159162014|gb|ABM92890.2| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 208/392 (53%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLVLLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|126215525|ref|YP_001054772.1| NADH dehydrogenase subunit 4 [Oreochromis sp. KM-2006] gi|125625437|dbj|BAF46801.1| NADH dehydrogenase subunit 4 [Oreochromis sp. KM-2006] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 201/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S ++ D +S L+ LT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLALTCWLLPLMILASQNHTAPEPISRQRTYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ + A++++ Sbjct: 112 SATEVIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLHVALLLLQNN 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L +M F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYTPSMQLSSFADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTSWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFHWSWWTIALTGGGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|281428855|ref|YP_003355031.1| NADH dehydrogenase subunit 4 [Oreochromis niloticus] gi|281309683|gb|ADA58754.1| NADH dehydrogenase subunit 4 [Oreochromis niloticus] Length = 460 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S ++ D +S L+ LT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLALTCWLLPLMILASQNHTASEPISRQRTYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L +M F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYTPSMQLSSFADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFHWSWWTIALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|62184476|ref|YP_220624.1| NADH dehydrogenase subunit 4 [Sundasalanx mekongensis] gi|58430897|dbj|BAD89237.1| NADH dehydrogenase subunit 4 [Sundasalanx mekongensis] Length = 460 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 135/404 (33%), Positives = 216/404 (53%), Gaps = 17/404 (4%) Query: 65 IEYYHWIDY----FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMI 116 + + HW ++++ +D +S L+VL+ +L P IL+S + R Y+ Sbjct: 39 LSWLHWTTETGWTLPNFYMAIDPLSAPLLVLSCWLLPLMILASQNHTRTEPIHRQRTYIS 98 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGS 175 L++ +I AF + ++++FY+ FEA+L+P +II WG +ER+ A F YT GS Sbjct: 99 LLASLQAFLILAFGATEIIMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGS 158 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTW 231 + +L A++ + + T S+ L F++ W W +F +K+P++ H W Sbjct: 159 LPLLIALLNL--QNSTGSLSMLTLNFNETFTLTSWSSKIWWTGCLLAFLVKMPLYGVHLW 216 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP AHV+AP AGS+ LA ++LK+GGYG IR L PL + P I L+L +I Sbjct: 217 LPKAHVEAPIAGSMVLAAVLLKLGGYGLIRMTSILDPLTKEMAYPFIV-LALWGVIMTGS 275 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 + + QTD+K LIAYSS++HMG V GIF G+ GA+ M++HGLVSSALF Y Sbjct: 276 ICLRQTDLKSLIAYSSVSHMGLVAGGIFIQTPWGLTGAIILMIAHGLVSSALFCLANTAY 335 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R H+R + GL P A + +AN+ LP +GE ++I ++F S + Sbjct: 336 ERTHSRTMVLARGLQILFPLTATWWFIANLANLALPPLPNLMGEIMIITTLFNWSPWTLI 395 Query: 412 LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L G +++A YSL+++ G + + L RE ++ Sbjct: 396 LTGTGTLITAGYSLYMFLMTQRGPTPAHII-GLTPYHTREHLLI 438 >gi|56692336|ref|YP_164033.1| NADH dehydrogenase subunit 4 [Anguilla rostrata] gi|56692409|ref|YP_163864.1| NADH dehydrogenase subunit 4 [Anguilla bicolor bicolor] gi|56692423|ref|YP_163877.1| NADH dehydrogenase subunit 4 [Anguilla bicolor pacifica] gi|56692466|ref|YP_163838.1| NADH dehydrogenase subunit 4 [Anguilla australis australis] gi|56565312|dbj|BAD77993.1| NADH dehydrogenase subunits 4 [Anguilla australis australis] gi|56565340|dbj|BAD78019.1| NADH dehydrogenase subunits 4 [Anguilla bicolor bicolor] gi|56565354|dbj|BAD78032.1| NADH dehydrogenase subunits 4 [Anguilla bicolor pacifica] gi|56565522|dbj|BAD78188.1| NADH dehydrogenase subunits 4 [Anguilla rostrata] Length = 460 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMRLEPINRQRSYITLLISLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPLILSSWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTP-NHIIGLEPSHTREHLLI 438 >gi|256427342|ref|YP_003127103.1| NADH dehydrogenase subunit 4 [Hyperoglyphe japonica] gi|256353259|dbj|BAH97775.1| NADH dehydrogenase subunit 4 [Hyperoglyphe japonica] Length = 460 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ VD +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMAVDALSTPLLVLTCWLLPLMILASQNHTSLEPLNRQRMYITLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 VIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLHNNTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQFSSPLQLISYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R + L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMTMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S+ +L G +++A YSL+++ Sbjct: 354 PLMTTWWFLASLANLALPPLPNLMGELMIITSLFNWSHWTILLTGAGTLITASYSLYMF 412 >gi|19343526|ref|NP_597990.1| NADH dehydrogenase subunit 4 [Ursus maritimus] gi|19110582|gb|AAL85190.1|AF303111_10 NADH dehydrogenase subunit 4 [Ursus maritimus] gi|21425562|emb|CAD21728.1| NADH dehydrogenase subunit 4 [Ursus maritimus] gi|288898370|gb|ADC66682.1| NADH dehydrogenase subunit 4 [Ursus maritimus] gi|288898440|gb|ADC66747.1| NADH dehydrogenase subunit 4 [Ursus maritimus] Length = 459 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 135/391 (34%), Positives = 207/391 (52%), Gaps = 31/391 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLVLTTWLLPLMLMASQFHLSKETLTRKKLYITMLVLLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLHT--QNNLGSLN 175 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 L +QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 176 FLL--------MQYWTQPLPNSWSSMFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL S + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLGPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSLLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T IGE V+++ F SN L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLSLPPTINLIGELFVVVATFSWSNITITLMGTNIIITALY 406 Query: 424 SLWLYRKVVFGVSKC-EKVQQLKDLSLRERC 453 S LY + KC V+ +K RE Sbjct: 407 S--LYMLITTQRGKCTNHVKSIKPSFTRENA 435 >gi|288908977|dbj|BAI77218.1| NADH dehydrogenase subunit 4 [Bertella idiomorpha] Length = 460 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 204/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 H+ D +S L+VLT +L P IL+S + R Y++ L+ +I AF + + Sbjct: 56 HMATDPLSTPLLVLTCWLLPLMILASQGHMASEPLNRQRTYIVLLTSLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ +T Sbjct: 116 IIMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTETL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + P + + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSTLPPLTTYTDKLW-WLGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P+I F +L ++ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVVLEPLTKELTYPLIIF-ALWGVVMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ + Sbjct: 294 HMGLVIGGILIQTPWGFSGALTLMIAHGLTSSALFCLANTNYERTHSRTMILARGMQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP + E +++ S+F S L G +++A YSL+++ Sbjct: 354 PLMTSWWFLASLANLALPPLPNLMAELMILTSLFNWSPWTIALTGMGTLITATYSLYMF 412 >gi|157736127|ref|YP_001491483.1| NADH dehydrogenase subunit 4 [Heniochus diphreutes] gi|157679340|dbj|BAF80398.1| NADH dehydrogenase subunit 4 [Heniochus diphreutes] Length = 460 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/373 (35%), Positives = 204/373 (54%), Gaps = 11/373 (2%) Query: 71 IDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMV 125 + + C S ++ D +S L+VLT +L P IL+S N + I L L+ + Sbjct: 48 VGWSCLSTYMATDPLSTPLLVLTCWLLPLMILASQNHTSSEPLNRQRMHITLLTSLQIFL 107 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVV 184 I AF + + L+FY+ FEA+LIP V+I WG +ER+ A F YT GS+ +L A+++ Sbjct: 108 IMAFGATETLMFYVMFEATLIPTLVLITRWGNQAERLNAGTYFLFYTLAGSLPLLIALML 167 Query: 185 MCWEKKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + T S++ L FP + + W W F +K+P++ H WLP AHV+AP Sbjct: 168 LQNSTGTLSMLILQYSDPFPLNTYAHKLW-WAGCLLGFLVKLPLYGAHLWLPKAHVEAPI 226 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA I+LK+GGYG +R L L PL + P I L+L ++ + + + QTD+K Sbjct: 227 AGSMVLAAILLKLGGYGMMRLLPVLEPLTKELGYPFII-LALWGVVMTASICLRQTDLKS 285 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG V I G+ GA+ M++HGL SSALF Y+R H+R + Sbjct: 286 LIAYSSVSHMGLVASAILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMLL 345 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GL +P + ++AN+ LP +GE ++I S+F S +L G +++A Sbjct: 346 ARGLQMALPLMTTWWFITSLANLALPPLPNLMGELMIITSLFNWSPWTIILTGLGTLITA 405 Query: 422 LYSLWLYRKVVFG 434 YSL ++ G Sbjct: 406 GYSLQMFLTTQRG 418 >gi|298110799|gb|ADI57758.1| NADH dehydrogenase subunit 4 [Ovis vignei] gi|298110813|gb|ADI57771.1| NADH dehydrogenase subunit 4 [Ovis vignei] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/375 (34%), Positives = 211/375 (56%), Gaps = 16/375 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ L+L + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLARKKLFISMLILLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI--QNTMGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPMPNSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITLLLNPI-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP + IGE V+MS F SN +L +V++ALYSL++ + Sbjct: 356 AAWWLLASLTNLALPPSINLIGELFVVMSTFSWSNITIILMGLNMVITALYSLYM----L 411 Query: 433 FGVSKCEKVQQLKDL 447 + + Q + ++ Sbjct: 412 ITTQRGKHTQHINNI 426 >gi|294959518|gb|ADF49050.1| NADH dehydrogenase subunit 4 [Bison bison] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I L+ L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLISLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPVHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|34393060|dbj|BAC82841.1| NADH dehydrogenase subunit 4 [Cervus nippon yesoensis] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW++ +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLSCMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K L+A Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFMMLSLWGMIMTSSICLRQTDLKSLMA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 Y S++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YPSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTFLPLMATWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|269994134|dbj|BAI50139.1| NADH dehydrogenase subunit 4 [Alepocephalus longiceps] Length = 461 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHIASEPINRQRTYISLLASLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLSLFSWGDKIW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L I+ + + QTD+K LIAYSS+ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGILMTGSICLRQTDLKSLIAYSSVG 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + ++AN+ LP +GE ++I ++F S V G +++A YSL+L+ Sbjct: 354 PLTAVWWLTASLANLALPPLPNLMGEIMIIATMFNWSPWTLVFTGLGTLITAGYSLYLF 412 >gi|47588962|gb|AAT36036.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] gi|47588986|gb|AAT36039.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] gi|47589015|gb|AAT36042.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] gi|110432585|gb|ABG73888.1| NADH dehydrogenase subunit 4 [Lepilemur seali] gi|110432590|gb|ABG73892.1| NADH dehydrogenase subunit 4 [Lepilemur seali] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 207/363 (57%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTTWLFPLTVMASQYHLTKESWERKKHFLSTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L V +C + + + Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLL---VALCHIQDSMGTLS 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPSSWSNYLLWTACIMAFMVKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R ++ L PL +++ A + L +I SL+ + QTD+K LIAYSSI+HM Sbjct: 236 LKLGGYGMMRIIMILNPL-TKFMAYPFLMMCLWGMIMTSLICLRQTDLKSLIAYSSISHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 VT+ I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVTMAILIQTPWSLMGATTLMVAHGLTSSVLFCLANSNYERIHSRTMLLARGLQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ +++N+ LP + IGE LV M+ F SNT +L ++++A YSL++ Sbjct: 355 MNTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLITATYSLYMLTTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|147917522|gb|ABQ52628.1| NADH dehydrogenase subunit 4 [Equus caballus] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 205/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ +L++ +I F + +++ F Sbjct: 59 DPLSAPLLVLTTWLLPLMLMASQHHLSKEPLTRKKLYITMLTMLQTFLIMTFTATELISF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ SI + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALI---------SIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L F IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 LTGSLNF-LLIQYWNQALPDSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L P S + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTMLNPQTS-FMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE V+MS F SN +L + ++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPSINLIGELFVVMSSFSWSNITIILMGANITITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINSIKPSFTRENALM 437 >gi|284177695|ref|YP_003406699.1| NADH dehydrogenase subunit 4 [Oreochromis aureus] gi|283825434|gb|ADB43186.1| NADH dehydrogenase subunit 4 [Oreochromis aureus] gi|291002211|gb|ADD71213.1| NADH dehydrogenase subunit 4 [Oreochromis niloticus] gi|291002239|gb|ADD71239.1| NADH dehydrogenase subunit 4 [Oreochromis aureus] gi|291002253|gb|ADD71252.1| NADH dehydrogenase subunit 4 [Oreochromis aureus] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S ++ D +S L+ LT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLALTCWLLPLMILASQNHTASEPISRQRAYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L +M F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYAPSMQLSSFADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFHWSWWTIALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|269994190|dbj|BAI50191.1| NADH dehydrogenase subunit 4 [Bathytroctes macrolepis] Length = 461 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 206/372 (55%), Gaps = 10/372 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLAADPLSTPLLVLTCWLLPLMILASQNHVSPEPISRQRMYISLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLSKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMMLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 354 PLTAVWWFTANLANLALPPLPNLMGEIMIITTMFNWSPWTLALTGLGTLITASYSLYLFL 413 Query: 430 KVVFGVSKCEKV 441 G + + Sbjct: 414 MTQRGPAPAHMI 425 >gi|223471657|ref|YP_002587069.1| NADH dehydrogenase subunit 4 [Tursiops truncatus] gi|170026979|gb|ACB06032.1| NADH dehydrogenase subunit 4 [Tursiops truncatus] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 208/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L+ ++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLVMLQVLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGMNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|16356949|ref|NP_443615.1| NADH dehydrogenase subunit 4 [Myripristis berndti] gi|16267176|dbj|BAB70309.1| NADH dehydrogenase subunit 4 [Myripristis berndti] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/359 (36%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRMYISLLTTLQIFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IILFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLMGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLALQYVKPLQLLSLGDKLW-WAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVILDPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGLTGALLLMIAHGLASSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLLLTGAGTLITAGYSLYMF 412 >gi|291002169|gb|ADD71174.1| NADH dehydrogenase subunit 4 [Oreochromis niloticus] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S ++ D +S L+ LT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLALTCWLLPLMILASQNHTASEPISRQRTYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L +M F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYTPSMQLSSFADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFHWSWWTIALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|13540768|ref|NP_110513.1|ND4_15626 NADH dehydrogenase subunit 4 [Anguilla japonica] gi|13429965|dbj|BAB39721.1| NADH dehydrogenase subunit 4 [Anguilla japonica] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 211/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + Sbjct: 54 NTYLATDPLSTPLLVLSCWLLPLMILASQNHMRPEPINRQRSYITLLISLQMFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLTIQYTKPLILSTWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 MILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTP-NHIIGLEPSHTREHLLI 438 >gi|76262545|gb|ABA41432.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/392 (33%), Positives = 209/392 (53%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A + F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGFYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+ P AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEGPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A+ ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAMWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|56692322|ref|YP_163825.1| NADH dehydrogenase subunit 4 [Anguilla anguilla] gi|56565298|dbj|BAD77980.1| NADH dehydrogenase subunits 4 [Anguilla anguilla] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMRLEPTNRQRSYITLLISLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPLILSSWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTP-NHIIGLEPSHTREHLLI 438 >gi|95116714|gb|ABF56569.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 207/392 (52%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQMERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|552879|gb|AAA67418.1| presumptive protein 4 [Sceloporus grammicus] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 127/364 (34%), Positives = 197/364 (54%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + L +D IS L+ L+ +L P + +S ++ R +++ +L++ +I F Sbjct: 52 FSTPQLMIDPISAPLLALSCWLLPLMVPASQNHLKSEPMHRKRMFLMTLSILQTFLILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + + LFYI FEA+L+P +II WG +ER+ A F YT S+ +L AI+ + + Sbjct: 112 TATNFTLFYIMFEATLVPTLIIITRWGNQAERLTAGTYFLFYTLASSLPLLIAILYLNSK 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 SSI+ L P W MW A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 NHHSSIMLLQLTQ--PQLTNSWSNVFMWAACLLAFMVKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+G YG +R L P+ + + P + L+L I+ S + M QTD+K LIA Sbjct: 230 MVLAAILLKLGSYGIMRITTLLMPMTPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GAM M++HGL SS LF Y+R HTR + G Sbjct: 289 YSSVSHMGLVVAACLIQTPWSFTGAMILMVAHGLTSSMLFCLANTNYERTHTRTMVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 P + ++ + NM LP + +GE L+I+S+F S+ +L G +++A+YS Sbjct: 349 FQIIFPLMSTWWLMANLTNMALPPSINLMGELLIIVSLFNWSSPTILLTGLGTLITAVYS 408 Query: 425 LWLY 428 L ++ Sbjct: 409 LHMF 412 >gi|56692378|ref|YP_163968.1| NADH dehydrogenase subunit 4 [Anguilla mossambica] gi|56565452|dbj|BAD78123.1| NADH dehydrogenase subunits 4 [Anguilla mossambica] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 209/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S + R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMHLEPINRQRSYITLLISLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPLILSSWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTP-NHIIGLEPSHTREHLLI 438 >gi|37496443|emb|CAD21982.1| NADH dehydrogenase subunit 4 [Procavia capensis] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 198/354 (55%), Gaps = 14/354 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S + + Y+ + L+ ++I F + ++++F Sbjct: 59 DTLSTPLLILTTWLLPLMLLASQHHLMNEPTTRKKTYITMLISLQLLLIITFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-I 195 YI FE++LIP ++I WG SER+ A F YT GS+ +L ++ M + +I I Sbjct: 119 YIMFESTLIPTMIVITRWGNQSERLNAGLYFLFYTLLGSLPLLITLLHMQNTLGSLNILI 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 Y + P S W MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 179 SPYYTNSLPNS---WSTSLMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + LS+ ++ S + M QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITIFLDPLTKSMAYPFLL-LSMWGMVMTSSICMRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIVAIMIQTPWSYMGATTLMIAHGLTSSLLFCLANTNYERTHSRTMILTRGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 A + ++ N+ LP + IGE LVIMS F SNT +L ++++A+Y+L Sbjct: 355 MAAWWTLASLTNLALPPSINLIGELLVIMSSFSWSNTTLILTGLNMLITAMYTL 408 >gi|159027127|emb|CAO86758.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 490 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 145/420 (34%), Positives = 231/420 (55%), Gaps = 7/420 (1%) Query: 55 FDKGRSSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD Q WI++ +Y LGVDG+S L+ L + LT + +S + + Sbjct: 48 FDPSNPQMQFTVNLPWINFLGFNYALGVDGLSFSLLFLNSILTIIALYASGTEVNRP-KF 106 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L+L + V GAFL+ D+LLF++F+E ++P++ +I +WGG R YA KF LYT Sbjct: 107 YYSLLLLLNAGVAGAFLAQDLLLFFLFYELEIVPLYFLIAIWGGQRRGYAGMKFLLYTAI 166 Query: 174 GSIFMLFAIVVMCWEKKTSSII-DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 +L + + + W ++ + + Q + I AIKIP+FPFHTWL Sbjct: 167 SGFLVLISFLGLVWLTGANNFAYNPLLSNNLDVKTQLLLLIPLLIGLAIKIPIFPFHTWL 226 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHV+A T SV LAGI+LK+G YG +RF + LF A AP + ++ I+ +Y + Sbjct: 227 PDAHVEASTPVSVLLAGILLKLGTYGLLRFGVGLFLDAWVTLAPWLATIAAISALYGASC 286 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q D+KK++AYSSI+HM Y+ + + + + A+ QM+SHGL+S+ LF VGV+Y Sbjct: 287 AIAQKDMKKVVAYSSISHMAYILLAAAATTRLSITAAILQMISHGLISALLFLLVGVVYK 346 Query: 353 RLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + +RD+ GL++ +P ++M++ MA+ G+PG GFI EFLV F Sbjct: 347 KTGSRDVDYLRGLLNPERGLPITGMLMILAAMASAGIPGMVGFIAEFLVFRGSFPIFPIQ 406 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +L L+A+Y L + +V FG E + ++ + ER +A+ + G+ P Sbjct: 407 TLLCLVASGLTAVYFLLMINRVFFGRLTPE-LSRIPRSTWPERFPEIALALFIIVLGLQP 465 >gi|119360731|ref|YP_913714.1| NADH dehydrogenase subunit 4 [Leptobotia mantschurica] gi|119225439|dbj|BAF41788.1| NADH dehydrogenase subunit 4 [Leptobotia mantschurica] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYTQPLILNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGEIMIISTLFNWSPWTIALTGTGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIVGLPPFHTREHLLM 438 >gi|239997673|gb|ACS37179.1| NADH dehydrogenase subunit 4 [Pipa pipa] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 127/365 (34%), Positives = 207/365 (56%), Gaps = 10/365 (2%) Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIG 127 +F ++ + +D +S L++L+ +L P IL+S + + R ++ L+ +I Sbjct: 49 PHFTTHPMSIDPLSSPLLILSCWLLPLMILASQHHLSHEPIQRQRTFLTTVATLQLSLIL 108 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 AF + +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 109 AFSATELILFYIMFEMTLIPTLIIITRWGNQTERLNAGAYFLFYTLAGSLPLLVALLWLQ 168 Query: 187 WEKKT--SSIIDL-YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + + + I+ L M ++ + W W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 169 TQSGSLSTPIMQLSTTMVAHTWAHKLW-WLACLLAFMVKMPLYGAHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL P + LSL II S + + QTD+K +I Sbjct: 228 SMVLAAVLLKLGGYGILRISMALTPLLKNLSYPFLI-LSLWGIIMTSSICLRQTDLKSMI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V + GAM M++HGL+SS+LF Y+R H+R + Sbjct: 287 AYSSVSHMGLVISAALIQTPWSLTGAMTLMIAHGLISSSLFCLANTNYERTHSRALMLAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ +ANM LP + +GE ++ ++F SN L G +L+A Y Sbjct: 347 GLQAILPLTATWWLLSNLANMALPPSPNLMGEITIMTALFNWSNWTIALTGLGTLLTASY 406 Query: 424 SLWLY 428 SL+++ Sbjct: 407 SLYMF 411 >gi|281376632|ref|YP_003331285.2| NADH dehydrogenase subunit 4 [Bathytroctes macrolepis] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 206/372 (55%), Gaps = 10/372 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YLAADPLSTPLLVLTCWLLPLMILASQNHVSPEPISRQRMYISLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLSKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMMLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 354 PLTAVWWFTANLANLALPPLPNLMGEIMIITTMFNWSPWTLALTGLGTLITASYSLYLFL 413 Query: 430 KVVFGVSKCEKV 441 G + + Sbjct: 414 MTQRGPAPAHMI 425 >gi|145315786|gb|ABP63321.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/391 (33%), Positives = 207/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLILTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + +GE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLVGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLIMTQRG-KYTHHINNIKPSFTRENALM 437 >gi|134303087|ref|YP_001122909.1| NADH dehydrogenase subunit 4 [Oncorhynchus kisutch] gi|118412524|gb|ABK81700.1| NADH dehydrogenase subunit 4 [Oncorhynchus kisutch] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 204/363 (56%), Gaps = 14/363 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S + R Y+ + L+ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRTYISLLVSLQMFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDNG 173 Query: 191 TSSIIDL-YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S+ L YA P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYAQ---PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I L+L I+ + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRMVVMLDPLTKELAYPFIV-LALWGIVMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QMVLPLMTTWWFMASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSL 409 Query: 426 WLY 428 +L+ Sbjct: 410 YLF 412 >gi|332886940|dbj|BAK23052.1| NADH dehydrogenase subunit 4 [Luciosoma bleekeri] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 134/386 (34%), Positives = 207/386 (53%), Gaps = 11/386 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHINSEPISRQRMYISLLASLQTFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++V+ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLAGSLPLLVALLVLQQSTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLMLPHTQLAPLTSWGNTMW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR ++ L P++ Q P I L+L +I ++ + QTD+K LIAYSS+ Sbjct: 235 VLLKLGGYGMIRIMVVLEPMSKQMIYPFIV-LALWSITMTGMICLRQTDLKSLIAYSSVG 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 294 HMGLVAGGILIQTPWGFSGAIILMIAHGLTSSALFCLANTSYERTHSRTMMLVRGMQMIF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A+ + +AN+ +P +GE ++I ++F S L G +++A YSL+++ Sbjct: 354 PLTAIWWFITNLANLAMPPLPSLMGEIMIITALFNWSPWTIALTGLGTLITASYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G L RE ++ Sbjct: 414 TSQRGPVP-NHTTNLPPFHTREHLLI 438 >gi|299828932|ref|YP_003734763.1| NADH dehydrogenase subunit 4 [Coilia reynaldi] gi|299758177|dbj|BAJ09987.1| NADH dehydrogenase subunit 4 [Coilia reynaldi] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 137/400 (34%), Positives = 217/400 (54%), Gaps = 15/400 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S ++ +D +S L+VLT +L P IL+S + R Y+ L++ +I AF + Sbjct: 54 SNYMAIDPLSSPLLVLTCWLLPLMILASQNHTKAEPVSRQRTYISLLASLQAFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 114 TEIIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLALQATTG 173 Query: 191 TSSIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S++ L ++ + + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSMLTLNFNQPLTLISWGDKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L PL P I L+L I+ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRITPILDPLTKDMAYPFIV-LALWGIVMTGTICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI + G+ GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVASGILTQTPWGMTGAIILMIAHGLTSSALFCLANTNYERTHSRTMALARGMQL 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A + +AN+ LP +GE ++I ++F S VL G +++A YSL++ Sbjct: 352 LFPLTATWWFIANLANLALPPLPNLMGEMMIITTMFNWSPWSIVLTGLGTLITAGYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + L RE ++ PI +LT+ Sbjct: 412 FLMTQRGQTPTH-ITALPPYHTREHLLIMLHLVPIILLTL 450 >gi|119360365|ref|YP_913597.1| NADH dehydrogenase subunit 4 [Acheilognathus typus] gi|119225299|dbj|BAF41658.1| NADH dehydrogenase subunit 4 [Acheilognathus typus] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 208/387 (53%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 HL D +S L+VLT +L P IL+S ++ R Y+ L++ +I AF + + Sbjct: 56 HLATDPLSTPLLVLTCWLLPLMILASQNHMKPEPMARQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT S+ +L A++++ ++ Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLASSLPLLVALLLL--QQSMG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYTQPLTLYSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ Q P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMILLDPLSKQLAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLASSMLFCLANTTYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAAWWFAANLANLALPPLPNLMGELMIITTLFNWSPATIALTGLGTLITASYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G S + +L RE ++ Sbjct: 413 LMSQRG-STPSHIIKLPPFHTREHLLM 438 >gi|6648652|gb|AAF21276.1| NADH ubiquinone oxidoreductase subunit 4 [Megalobrama pellegrini] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 209/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP HV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPMLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKTHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I + F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTPFNWSPWAFALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-ITKLPPFHTREHLLM 438 >gi|25057224|ref|NP_739720.1| NADH dehydrogenase subunit 4 [Lota lota] gi|25005617|dbj|BAC23277.1| NADH dehydrogenase subunit 4 [Lota lota] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VL+ +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YIATDPLSTPLLVLSCWLLPLMILASQNHLSSEPVNRQRMYITLLATLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNNAGTL 175 Query: 193 SIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L PF W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILPYTKPLLLTPFGSNIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMVMLEPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLILTGAGTLITAAYSLYMF 412 >gi|120586804|ref|YP_961326.1| NADH dehydrogenase subunit 4 [Gymnogobius petschiliensis] gi|40886721|gb|AAR96280.1| NADH dehydrogenase subunit 4 [Gymnogobius petschiliensis] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 132/358 (36%), Positives = 202/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 L +D +S L+VLT +L P IL+S N + + L+ L+ +I AF + ++ Sbjct: 57 LALDPLSTPLLVLTCWLLPLMILASQNHTATEPINRQRMFVTLLISLQIFLIMAFSATEV 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 LLFYI FEA+L+P ++I WG ER+ A F YT GS+ +L A++++ + S Sbjct: 117 LLFYIMFEATLVPTLILITRWGSQGERLNAGTYFLFYTLAGSLPLLVALLILQNTTGSLS 176 Query: 194 IIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L FP + + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLPYTPTFPLVTIADKLW-WAGCLLAFLVKMPLYGMHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LIAYSS+ H Sbjct: 236 LLKLGGYGMMRMMIVLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVGH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R HTR + G+ +P Sbjct: 295 MGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHTRTMLLARGMQVVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S T VL G +++A YSL+++ Sbjct: 355 LMTCWWFIASLANLALPPLPNLMGELMIISSLFNWSWTTIVLTGTGTLITAGYSLYMF 412 >gi|14587472|gb|AAK70518.1|AF224616_4 NADH dehydrogenase subunit 4 [Cheirogaleus medius] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 136/395 (34%), Positives = 215/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLMKETWMRKKLYLSMLIFLQVFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYT--QNFLGSLNM 176 Query: 195 --IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I LY ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LTITLYNQELSNSWSNSFLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P+ +++ A + L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITMILDPM-TKFLAYPLLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 VT+ I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVTMAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQSFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP IGE LVIM+ F SN +L + ++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELLVIMASFSWSNITIILTGLNMFITALYSLYMLTVTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G S + L RE + ++PIA+LT+ Sbjct: 416 RGKSTYH-MHNLNPSFTRENTLMSMHMFPIALLTL 449 >gi|6648658|gb|AAF21280.1| NADH ubiquinone oxidoreductase subunit 4 [Megalobrama terminalis] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPMLLNSWGHKIWWAACLIAFLVKMPLYGVHLWLPKAHVEAPFAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ L +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALSPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTP-SHITKLPPFHTREHLLM 438 >gi|25057210|ref|NP_740136.1| NADH dehydrogenase subunit 4 [Petroscirtes breviceps] gi|25006148|dbj|BAC23757.1| NADH dehydrogenase subunit 4 [Petroscirtes breviceps] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 209/387 (54%), Gaps = 15/387 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 +G D +S L++LT +L P IL+S I N++ I+ L L+ +I AF + ++ Sbjct: 57 MGSDPVSSPLIILTCWLLPLMILASQNHISPEPLNYQRTYISLLASLQLFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAI-----VVMCWE 188 L+FYI FEA+LIP F II WG ER+ A Y F YT GS+ +L A+ + Sbjct: 117 LMFYIMFEATLIPTFFIITRWGNQPERLDAGYYFLFYTLVGSLPLLLALFYIQNLTGTLS 176 Query: 189 KKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 T + DL+ + + +W++ +F IK P++ H WLP AHV+AP AGS+ LA Sbjct: 177 TLTLPLSDLHLDHSYAHKL---LWVSCLLAFLIKTPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR +L L PL P + ++L +I A + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRIILILDPLTDIMAYPFLV-MALWGMIMAGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G+ G++ M++HGL SSALF + Y+R H+R I GL Sbjct: 293 SHMGLVAAGILIQTPWGLAGSIVLMIAHGLTSSALFCLANMNYERTHSRSIILSRGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + + ++AN+ LP + +GE ++I + F S +L +++A YSL+++ Sbjct: 353 FPLLSTWWFLMSLANLALPPSPNLMGELMIITATFGWSWWTLLLTGPATLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE V Sbjct: 413 LMTQRG-PLPHHITNLPPTHSREHLTV 438 >gi|296905334|gb|ADH84029.1| NADH dehydrogenase subunit 4 [Leptobotia taeniops] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILPYSQPLILSSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGEIMIISTLFNWSPWTIILTGTGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHIVGLPPFHTREHLLM 438 >gi|47588131|gb|AAT35912.1| NADH dehydrogenase subunit 4 [Cheirogaleus medius] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 213/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLMKETWTRKKSYLSMLIFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALI---YTQNSLGSLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + M+ + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 MTTMTLCNQELSNSWSNGLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P+ ++Y A + L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPM-TKYLAYPLLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQSFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPFINLIGELLVIMASFSWSNITIILTGLNMLITALYSLYMLTVT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G L RE + + PI +LT+ Sbjct: 415 QRG-KTTYHTHNLNPSLTRENTLMSMHMLPIILLTL 449 >gi|108937501|ref|YP_654159.1| NADH dehydrogenase subunit 4 [Batrachuperus mustersi] gi|84371683|gb|ABC56121.1| NADH dehydrogenase subunit 4 [Batrachuperus mustersi] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/399 (33%), Positives = 221/399 (55%), Gaps = 24/399 (6%) Query: 40 ISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFC 99 +ST + + +LF S+F+ + Y LG+D +S L++LT +L P Sbjct: 27 MSTNSLLIALFSLSMFNLPSEHMMLNNKY----------LGLDPLSSPLLILTCWLLPMM 76 Query: 100 ILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 IL+S ++ N R Y+ ++L++ +I AF + +M++FYI FE +LIP +II W Sbjct: 77 ILASQNHLKNNPINRQRTYITMLIILQASLILAFTATEMIMFYIAFETTLIPTLIIITRW 136 Query: 156 GG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFP-----FSIQY 209 G +ER+ A F YT GS+ +L A+++M S + L MS P FS + Sbjct: 137 GNQAERLNAGTYFLFYTLAGSLPLLVALLIMQ-NSLGSLSLFLLEMSN-PLQLTLFSDKI 194 Query: 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 W W A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L P+ Sbjct: 195 W-WGACLIAFLVKMPLYGMHLWLPKAHVEAPIAGSIILAAVLLKLGGYGILRISVMLTPM 253 Query: 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 + + P + L+L +I + + +T +K LIAYSS++HMG V GA Sbjct: 254 SKELSHPFLI-LALWDVIMTGMTWLQRTHLKSLIAYSSVSHMGLVIAAALIQTPWSFTGA 312 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 + M+SHGL+SSALF + Y+R H+R + G +P ++ ++NM LP + Sbjct: 313 IILMISHGLISSALFCLANMNYERTHSRTLLLMRGTQTILPLMTTWWLLINLSNMALPPS 372 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 GE ++++S+F S+ ++ G +++A Y+L+++ Sbjct: 373 LNLWGELIIMVSMFNWSSWTIMVTGIGTLITASYTLYMF 411 >gi|37620610|gb|AAQ95114.1| NADH dehydrogenase subunit 4 [Mirounga leonina] Length = 459 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 210/384 (54%), Gaps = 13/384 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGMYFLFYTLVGSLPLLVALLFIQNNMGTLNFL 177 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L +++ P + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 178 MLQLLTQ-PM-LNSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL + P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMMLNPLTNSMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQMLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 355 MAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILTGTNIIITALYSLYMLITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G ++ +K RE ++ Sbjct: 415 QRG-KFTHHIKNIKPSFTRENALM 437 >gi|14602395|ref|NP_148773.1| NADH dehydrogenase subunit 4 [Trachurus japonicus] gi|14588629|dbj|BAB61820.1| NADH dehydrogenase subunit 4 [Trachurus japonicus] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDALSTPLLVLTCWLLPLMILASQNHTSSEPINRQRMYITLLTSLQFFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGSL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L+ + P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLHYSNPIPLSTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLMATWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTLALTGTGTLITAGYSLYMF 412 >gi|16357398|ref|NP_443446.1| NADH dehydrogenase subunit 4 [Kareius bicoloratus] gi|16267337|dbj|BAB70452.1| NADH dehydrogenase subunit 4 [Kareius bicoloratus] Length = 460 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 135/385 (35%), Positives = 211/385 (54%), Gaps = 11/385 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K R Y+ L+ +I AF + ++ Sbjct: 57 MATDALSTPLLVLTCWLLPLMILASQKHTASEPLGRQRMYITLLASLQFFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTSGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L+ ++ ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLHYGDPLTLSSYADKMW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P I F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMTMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQSPWGLTGALTLMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQVALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 355 LMATWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTLALTGSGTLITAGYSLYMFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G V L+ RE ++ Sbjct: 415 TQRGPLPTH-VIALEPSHTREHLLI 438 >gi|295065688|ref|YP_003587630.1| NADH dehydrogenase subunit 4 [Oreochromis sp. 'red tilapia'] gi|294679497|gb|ADF29541.1| NADH dehydrogenase subunit 4 [Oreochromis sp. 'red tilapia'] Length = 460 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + ++ D +S L+ LT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLALTCWLLPLMILASQNHTASEPISRQRTYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L +M F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYTPSMQLSSFADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTSWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFHWSWWTIALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|209662409|ref|YP_002286784.1| NADH dehydrogenase subunit 4 [Xiphophorus maculatus] gi|209446927|dbj|BAG74795.1| NADH dehydrogenase subunit 4 [Xiphophorus maculatus] Length = 461 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 209/372 (56%), Gaps = 16/372 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F S + D IS L+VLT +L P IL+S + N + I+ L+ L+ +I AF Sbjct: 52 FLSCFMASDPISTPLLVLTCWLLPLMILASQNHLMLEPINRQRIFISLLISLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A++++ Sbjct: 112 SATELIMFYVMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLIALLLL--- 168 Query: 189 KKTSSIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++ + + + P ++ + W W+A +F +K+P++ H WLP AHV+AP A Sbjct: 169 QNSAGTLSFFTLPYLPPTYSTLWAHKIW-WVACLLAFLVKMPLYGAHLWLPKAHVEAPIA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K L Sbjct: 228 GSMVLAAVLLKLGGYGMMRILVILDPLTKELNYPFII-LALWGVIMTGSICLRQTDLKAL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V I + GA+ M++HGL SSALF Y+R H+R + Sbjct: 287 IAYSSVSHMGLVAAAILIQTPWALTGALILMIAHGLTSSALFCLANTNYERSHSRTMILA 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A+ T+AN+ LP +GE ++I S+F S +L G +++A Sbjct: 347 RGLQTLLPLTAIWWFTATLANLALPPLPNLMGELMIITSLFNWSTWTLILTGLGTLITAG 406 Query: 423 YSLWLYRKVVFG 434 YSL+++ G Sbjct: 407 YSLYMFLTTQRG 418 >gi|11545718|ref|NP_071462.1| NADH dehydrogenase subunit 4 [Sardinops melanostictus] gi|11526568|dbj|BAB18611.1| NADH dehydrogenase subunit 4 [Sardinops melanostictus] Length = 460 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 208/389 (53%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S ++ +D +S L+VLT +L P IL+S Q R Y+ L+ +I AF + Sbjct: 54 SNYMAIDPLSAPLLVLTCWLLPLMILASQNHTQPEPAARQRMYLSLLASLQVFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 114 TEIIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLSLQSSTG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + S++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 SLSMVTLNFCQ--PLTLMSWGDKIWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMIRMTTVLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTSYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE ++I ++F S VL G +++A YSL+ Sbjct: 351 MLFPLTATWWFIANLANLALPPLPNLMGEIMIITTMFNWSPWTLVLTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + L RE ++ Sbjct: 411 MFLMTQRGPVPAH-ITGLTPYHTREHLLI 438 >gi|33334129|gb|AAQ12187.1| NADH dehydrogenase subunit 4 [Bubalus bubalis] Length = 459 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 200/358 (55%), Gaps = 28/358 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALVYI---QSTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWAQPMSNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLLLNPV-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 L +P A ++ ++ N+ LP T IGE LV+MS F SNT +L +V++AL Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELLVVMSTFSWSNTTIILMGANMVITAL 405 >gi|46237742|ref|YP_005967.1| NADH dehydrogenase subunit 4 [Mola mola] gi|46092364|dbj|BAD14271.1| NADH dehydrogenase subunit 4 [Mola mola] Length = 460 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/366 (36%), Positives = 207/366 (56%), Gaps = 16/366 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S +L D +S L+VLT +L P IL+S + R Y++ L+ +I AF Sbjct: 52 FLSPYLATDPLSTPLLVLTCWLLPLMILASQNHMTHEPVNRQRTYIMLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEVIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--- 168 Query: 189 KKTSSIIDLYAMS-KFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + T+ + L A+ P ++ + W W +F +K+P++ H WLP AHV+AP A Sbjct: 169 QNTTGTLSLLALQYSNPLLLTTYADKLW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPVA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R L+ L PL Q P I L+L +I + + QTD+K L Sbjct: 228 GSMILAAVLLKLGGYGMMRMLVVLEPLTKQLSYPFII-LALWGVIMTGSICLRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + Sbjct: 287 IAYSSVSHMGLVVGGILVQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLA 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P + ++AN+ LP +GE L+I S+F S L G +++A Sbjct: 347 RGLQIALPLMTAWWFIASLANLALPPLPNLMGELLIITSLFNWSWWTLALTGAGTLITAG 406 Query: 423 YSLWLY 428 YSL+++ Sbjct: 407 YSLYMF 412 >gi|58372107|ref|YP_194933.1| NADH dehydrogenase subunit 4 [Trachurus trachurus] gi|38603504|dbj|BAD02887.1| NADH dehydrogenase subunit 4 [Trachurus trachurus] Length = 460 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDALSTPLLVLTCWLLPLMILASQNHTSSEPINRQRMYITLLTSLQFFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGSL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L+ + P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLHYSNPIPLSTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLMATWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTLALTGTGTLITAGYSLYMF 412 >gi|254445382|ref|ZP_05058858.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Verrucomicrobiae bacterium DG1235] gi|198259690|gb|EDY83998.1| proton-translocating NADH-quinone oxidoreductase, chain M subfamily [Verrucomicrobiae bacterium DG1235] Length = 508 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 132/419 (31%), Positives = 229/419 (54%), Gaps = 12/419 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 S HLG++GIS+ L V++ + L + +S EN Y+ L+++ ++G F S+D+ Sbjct: 79 SLHLGLNGISLPLFVMSAVVGLAAGLYAAQSKAENLSRYLFCLLIMQGGLMGVFASIDVF 138 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FY F E +LIP FV++GVWGG +R YAA K +Y G++ L ++ + + +S Sbjct: 139 FFYFFHELALIPTFVMVGVWGGRDRGYAAMKMTIYLTLGAMISLAGLIALYVKSGANSFD 198 Query: 194 IIDLYA-MSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +I L A ++ P S + ++ + F I + ++P HTW P + AP++ ++ AG+ Sbjct: 199 LITLKAHLAAAPLSETVSHYAFGLLLFGFGILVSLWPLHTWAPLGYGAAPSSAAMLHAGV 258 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 + K G YG I+ +PL P + I +L+L ++ L++M Q D+K+++ YSS+ H Sbjct: 259 LKKFGLYGLIQIAVPLIPGGVGQWENWIVWLALGNVVVVGLITMAQRDLKQMLGYSSVMH 318 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MGY +GI + GV GA+ M++HGL + LF +I+ R T ++ GGL P Sbjct: 319 MGYAFLGIAAMSVLGVGGAVLMMVAHGLTVALLFMLSTMIHHRTQTFEMEEMGGLSKKAP 378 Query: 371 RYAVVMMVFTMANMGLPGT--SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + + MA++GLPG + F GEF + +S+++ V +A+ G+++SA+Y L Sbjct: 379 VLSAFFVCAMMASIGLPGPGLANFWGEFGIFVSIWEYKPWVLFVAATGIIISAVYGLRSI 438 Query: 429 RKVVFGVS-----KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSS 482 +V FG + +K + D++ ER + VL F G++P + + + L S Sbjct: 439 SRVFFGNESEDFLEVQKENSVTDMTWAERVPALILLVLLFFIGLFPKTVTSSLNEALES 497 >gi|280978499|ref|YP_003345420.1| NADH dehydrogenase subunit 4 [Robinsia catherinae] gi|271280130|dbj|BAI53220.1| NADH dehydrogenase subunit 4 [Robinsia catherinae] Length = 460 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 203/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VL+ +L P IL+S + R Y+ + L+ + AF + Sbjct: 54 NLYIATDPLSTPLLVLSCWLLPLMILASQNHVSTEPANRQRSYITLLISLQIFLTLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLML--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSLLTIQYTKPLLMNTWGDKIWWAACVMAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMLIILNPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 291 SVSHMGLVVSGIMIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +ANM LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 VILPLMAAWWFIANLANMALPPLPNLMGELMIITSMFNWSYWSIILTGLGTLITAAYSLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|222839870|ref|YP_002587095.1| NADH dehydrogenase subunit 4 [Delphinus capensis] gi|170026993|gb|ACB06045.1| NADH dehydrogenase subunit 4 [Delphinus capensis] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 208/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L+ ++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLVMLQVLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGVNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|212725546|ref|YP_002317294.1| NADH dehydrogenase subunit 4 [Anguilla luzonensis] gi|261866703|ref|YP_003264352.1| NADH dehydrogenase subunit 4 [Anguilla sp. HYT-2008] gi|194441302|gb|ACF71024.1| NADH dehydrogenase subunit 4 [Anguilla sp. HYT-2008] gi|212720551|dbj|BAG84153.1| NADH dehydrogenase subunits 4 [Anguilla luzonensis] Length = 460 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMRLEPINRQRSYITLLISLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPLILSSWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTP-NHIIGLEPSHTREHLLI 438 >gi|148922540|ref|YP_001293667.1| NADH dehydrogenase subunit 4 [Clupea harengus] gi|148762530|dbj|BAF63980.1| NADH dehydrogenase subunit 4 [Clupea harengus] Length = 460 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VL +L P IL+S + R ++ + L++ +I AF + + Sbjct: 56 YMAIDPLSAPLLVLACWLLPLMILASQNHTRTEPISRQRTFICLLISLQAFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +L+FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T Sbjct: 116 ILMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLAL--QNSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ + P ++ W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMIILNFNPPLALASWGDMMWWAACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L P+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRMSTILDPITKEAAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 293 SHMGLVAGGILIQTPWGLTGALILMIAHGLVSSALFCLANTSYERTHSRTMALARGMQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A V +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTATWWFVANLANLALPPLPNLMGEVMIITTMFNWSPWTLILTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G E ++ L RE ++ Sbjct: 413 LMTQRGPVP-EHIKGLTPYHTREHLLI 438 >gi|256533419|gb|ACU82280.1| NADH dehydrogenase subunit 4 [Bos grunniens] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 201/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPMHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ LYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGMNMVITTLYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|256427356|ref|YP_003127116.1| NADH dehydrogenase subunit 4 [Cubiceps pauciradiatus] gi|256353273|dbj|BAH97788.1| NADH dehydrogenase subunit 4 [Cubiceps pauciradiatus] Length = 460 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 207/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S + QE R Y+ L+ +I AF + Sbjct: 54 NQYMATDPLSTPLLVLTCWLLPLMILASQNHTAQEPLNRQRMYITLLTSLQIFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L YA + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYAAPLQLVSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSYWTLLLTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|110432765|gb|ABG74032.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] gi|110432775|gb|ABG74040.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 131/402 (32%), Positives = 210/402 (52%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKEPWERKKHFLFTLISLQLFLIMTFTTTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYTGTLNLFMMTYWSQEMPNSWSSSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITIILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM VT+ I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVTVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN ++ ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIIMTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G S L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGKSSYHTHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|124055186|gb|ABM89795.1| NADH dehydrogenase subunit 4 [Chamaeleo chamaeleon] Length = 450 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 130/380 (34%), Positives = 210/380 (55%), Gaps = 14/380 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIGAFLSLD 133 +L VD IS L+ L+ +L P IL+S S Q R + + L++++ + S + Sbjct: 55 YLSVDQISAPLLTLSYWLLPIAILASQNHLKYSTQTQTRMFFMCLTTLQTLLTLSLSSTN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LF+I FEA+LIP +II WG ER+ A F YT S+ +L A+++M ++ Sbjct: 115 IILFFIMFEATLIPTMIIITRWGSQKERLTAGMYFMFYTLISSMPLLIALLMMNYQMDNL 174 Query: 193 SIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + L M+ + P +I MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 175 NT-TLTPMTTYKPNTI---MWLACTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAIL 230 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + P+ LA + P I ++L +I SL+ + Q D+K LIAYSSI+HM Sbjct: 231 LKLGGYGMMR-ISPMLCLAKTLYYPFII-VALWGMIMTSLICLRQPDLKSLIAYSSISHM 288 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V S + GAM M++HG+ SS LF ++Y+R HTR + G+ +P Sbjct: 289 GLVVTATMIQTPSSLSGAMILMVAHGITSSMLFCLANMMYERTHTRTLAMMQGIQTTLPL 348 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + NM +P T +GE + ++F S +L ++A+YS++++ + Sbjct: 349 LTAFWLISNLTNMAIPPTINLMGEITITTTMFNWSPPTLILTGSAATITAIYSMYMFSAI 408 Query: 432 VFGVSKCEKVQQLKDLSLRE 451 G K +K + RE Sbjct: 409 QQG--KTQKDMIISPPQTRE 426 >gi|207559850|gb|ACI24454.1| NADH dehydrogenase subunit 4 [Capra ibex] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 203/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QEN--FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ LVL + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENPTRKKLFISMLVLLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIHI--QNTVGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWAQPVPNSWSNVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITLLLNPI-TDYMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVMSAFSWSNITIILMGLNMVITALYSLYM 410 >gi|256427177|ref|YP_003126949.1| NADH dehydrogenase subunit 4 [Kyphosus cinerascens] gi|256353329|dbj|BAH97840.1| NADH dehydrogenase subunit 4 [Kyphosus cinerascens] Length = 460 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQAFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + P + + W W +F +K+P++ H WLP AHV+AP AGS+ LAG Sbjct: 176 SLLTLQYSNPIPLTTYADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMILAG 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R + L PL + P I F L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMTMLEPLTKELSYPFIIF-GLWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTSWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLLLTGAGTLITAGYSLYMF 412 >gi|46917268|dbj|BAD18048.1| NADH dehydrogenase subunits 4 [Leiognathus nuchalis] Length = 460 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 201/364 (55%), Gaps = 10/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + R Y+ L++++I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQHHMTPEPLPRQRAYITLLTSLQALLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++V+ T S Sbjct: 117 MMFYITFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLLSSLPLLVALLVLQNTTGTLS 176 Query: 194 IIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L S+ P F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 FLTLQFNSQMPLTSFTDKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L L PL Q P I L+L +I + + Q+D+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRILPLLEPLTKQLSYPFIL-LALWGMIMTGSICLRQSDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G GA+ M++HGL SSALF Y+R H R + GL P Sbjct: 295 MGLVVAGALLQTPWSFSGALILMIAHGLTSSALFCLANTNYERTHNRTMLLTRGLQTAFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A +F++AN+ LP +GE +VI S+F S +L G +++A YSL+++ Sbjct: 355 LMATWWFLFSLANLALPPLPNLMGELMVISSLFNWSPWTLILTGAGTLITAAYSLYMFLT 414 Query: 431 VVFG 434 G Sbjct: 415 TQRG 418 >gi|221145529|ref|YP_002519803.1| NADH dehydrogenase subunit 4 [Abalistes stellaris] gi|219806651|dbj|BAH10170.1| NADH dehydrogenase subunit 4 [Abalistes stellaris] Length = 460 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L DG+S L+VL+ +L P IL+S + R Y+ L+ +I AF + Sbjct: 54 NLYLATDGLSTPLLVLSCWLLPLMILASQNHLTSEPLNRQRMYISLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEILMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSAG 173 Query: 191 TSSIIDL-YAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + S P ++ ++W W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQHTTSICPNTWANKFW-WVGCMLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLTILDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A+ + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMAMWWFLASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|16357328|ref|NP_443589.1| NADH dehydrogenase subunit 4 [Hoplostethus japonicus] gi|16267144|dbj|BAB70283.1| NADH dehydrogenase subunit 4 [Hoplostethus japonicus] Length = 460 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 131/359 (36%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHMSSEPTNRQRTYISLLTSLQIFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNETGTL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSKPFQLLTYGDKLW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKELSYPFII-LALWGIIMTGSICLRQTDLKALIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMVLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L GV+++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIILTGAGVIITAGYSLYMF 412 >gi|299828974|ref|YP_003734802.1| NADH dehydrogenase subunit 4 [Lycengraulis grossidens] gi|299758213|dbj|BAJ09995.1| NADH dehydrogenase subunit 4 [Lycengraulis grossidens] Length = 460 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 211/386 (54%), Gaps = 11/386 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S Q R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSSPLLVLTCWLLPLMILASQNHTQMEPASRQRMYLSLLASLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLALQASTGSL 175 Query: 193 SIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L ++ + + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMVTLNFNEPLTLIHQADKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR L PL + P I L+L I+ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRITPILDPLTKEMAYPFIV-LALWGIVMTGTICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI + G+ GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 294 HMGLVASGILTQTPWGLTGAIILMIAHGLTSSALFCLANTSYERTHSRTMALARGMQTLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 354 PLTATWWFIANLANLALPPLPNLMGEMMIITTMFNWSPWSIILTGLGTLITAGYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 414 MTQRGQTPSH-ITALPPYHTREHLLI 438 >gi|262188098|ref|YP_003276032.1| NADH dehydrogenase subunit 4 [Cuon alpinus] gi|261840636|gb|ACY00236.1| NADH dehydrogenase subunit 4 [Cuon alpinus] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 129/379 (34%), Positives = 207/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQSHLSKEPLTRKKLYISMLILLQLFLIMTFTASELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + +I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHSLMGSLNFLI 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMASFSWSNITVILMGVNIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENT 435 >gi|298110687|gb|ADI57654.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|298110701|gb|ADI57667.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|298110743|gb|ADI57706.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|298110757|gb|ADI57719.1| NADH dehydrogenase subunit 4 [Ovis aries] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 131/376 (34%), Positives = 211/376 (56%), Gaps = 16/376 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ L+L + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLARKKLFISMLILLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI--QNTMGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPMPNSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITLLLNPI-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP + IGE V+MS F SN +L +V++ALYSL++ + Sbjct: 356 AAWWLLASLTNLALPPSINLIGELFVVMSTFSWSNITIILMGLNMVITALYSLYM----L 411 Query: 433 FGVSKCEKVQQLKDLS 448 + + + ++S Sbjct: 412 ITTQRGKHTHHINNIS 427 >gi|289183258|ref|YP_003457238.1| NADH dehydrogenase subunit 4 [Echinocardium cordatum] gi|288995573|emb|CBH40173.1| NADH dehydrogenase 4 [Echinocardium cordatum] Length = 470 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 135/378 (35%), Positives = 210/378 (55%), Gaps = 25/378 (6%) Query: 69 HWID--YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLE 122 HW+ + S+ LG D IS L+VL+ +L P +L++ S+ N R ++ LV+ Sbjct: 53 HWVSSWHNVSFILGSDSISAPLIVLSCWLAPLSLLANKSSLSNNPPLNQRTFIALVLVIT 112 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFA 181 + ++ F SL+++LFY+ FE +LIP ++I WG ER A F YT GS+ +L + Sbjct: 113 TALVITFSSLELILFYVAFETTLIPTLILITRWGAQMERFQAGLYFIFYTLVGSLPLLIS 172 Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + + T ++ + + +SI W W +F IK+P++ FH WLP AHV+ Sbjct: 173 LLAIYFSSLTLTLTNAELIWSPDYSIDSLNIW-WALSIVAFLIKMPIYGFHLWLPKAHVE 231 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY-------ASL 291 AP AGS+ LA I+LK+GGYG +R L+ LF S LSL+ II+ S+ Sbjct: 232 APVAGSMILAAILLKLGGYGLMR-LISLFSTVSAN------SLSLVLIIFCSWGALVTSI 284 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 + + QTD+K LIAYSS+ HM V GIFS G+ GA+ M++HGLVSSALF IY Sbjct: 285 ICVRQTDLKALIAYSSVGHMSIVAAGIFSQTPWGMNGALVLMIAHGLVSSALFSLANTIY 344 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R TR + G +P + ++ +N+GLP + IGE +++ S+ S + Sbjct: 345 ERNGTRTLAITRGFKLILPLSTIWWLLMCASNLGLPPSPNLIGEIMILTSLISWSPWLFP 404 Query: 412 LASFGVVLSALYSLWLYR 429 + V A+YSL +++ Sbjct: 405 ILGLATVFGAIYSLMVFQ 422 >gi|110432780|gb|ABG74044.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 131/402 (32%), Positives = 210/402 (52%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKEPWERKKHFLFTLISLQLFLIMTFTTTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYTGTLNLFMMTYWSQEMPNSWSSSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM VT+ I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVTVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN ++ ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIIMTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G S L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGKSSYHTHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|91176226|ref|YP_537167.1| NADH dehydrogenase subunit 4 [Verasper variegatus] gi|90287789|gb|ABD92809.1| NADH dehydrogenase subunit 4 [Verasper variegatus] Length = 460 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 137/385 (35%), Positives = 210/385 (54%), Gaps = 11/385 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSKPLLVLTCWLLPLMILASQKHTASEPLNRQRMYITLLSSLQFFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 VMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSSGTLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L+ + S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLHYTNPLALSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P I F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMTMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQSPWGLTGALTLMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQVALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A + ++AN+ LP +GE ++I S+F S VL G +++A YSL+++ Sbjct: 355 LMATWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTLVLTGGGTLITAGYSLYMFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G V L+ RE ++ Sbjct: 415 TQRGPLPTH-VIALEPSHTREHLLI 438 >gi|84488775|ref|YP_448812.1| NADH dehydrogenase subunit 4 [Manouria emys] gi|67005634|gb|AAY62432.1| NADH dehydrogenase subunit 4 [Manouria emys] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 123/343 (35%), Positives = 190/343 (55%), Gaps = 12/343 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 +++LGVD IS L++L+ +LTP IL+S + R ++ + L+ + AF + Sbjct: 53 NHYLGVDQISAPLLILSCWLTPLMILASQNHLIAEPMSRKRTFISTIISLQIPLTLAFSA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++F+I FE +LIP VII WG ER+ A F YT GS+ +L A++ M + Sbjct: 113 TELIMFFIAFETTLIPTLVIITRWGNQVERLNAGTYFLFYTLIGSLPLLVALLFMQTQNG 172 Query: 191 TSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S + P + W W A +F IK+P++ H WLP AHV+AP AGS+ Sbjct: 173 TLSTCTMQL--NQPTMMNSWTHSMWWFALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMI 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR + L PL+ P + ++L +I S + + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGIIRITMTLDPLSKTLSYPFMV-MALWGVIMTSSICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V + + GA+ M++HGL SS LF Y+R H+R + + Sbjct: 290 SVSHMGLVIAATLTQTQWSYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLTRNMQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 +P A+ ++ ++ NM LP T +GE +I S+F SNT Sbjct: 350 VLLPLMALWWLLASLTNMALPPTINLMGELTIIASLFNWSNTT 392 >gi|148922736|ref|YP_001293771.1| NADH dehydrogenase subunit 4 [Ilisha elongata] gi|148762642|dbj|BAF64084.1| NADH dehydrogenase subunit 4 [Ilisha elongata] Length = 460 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 202/366 (55%), Gaps = 12/366 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L++LT +L P IL+ Q R Y+ + L++++I AF + + Sbjct: 56 YMAIDPLSAPLLILTCWLLPLMILAXPNHTQTEPMPRQRTYISLLVSLQALLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLMGSLPLLVALLAL--QDSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMITLNYNQPSTLTSWGHKMWWAGCMVAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRMTSILDPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTSYERTHSRTMILARGLQTL 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTTTWWFIANLANLALPPLPNLMGEIMIITTLFNWSPWTLILTGLGTLITAGYSLYMF 412 Query: 429 RKVVFG 434 G Sbjct: 413 LTTQRG 418 >gi|327493041|ref|YP_004347988.1| NADH dehydrogenase subunit 4 [Canthigaster jactator] gi|327392262|dbj|BAK09713.1| NADH dehydrogenase subunit 4 [Canthigaster jactator] Length = 460 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 206/361 (57%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S N + I+ L L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHTAHEPINRQRMYISLLTSLQFFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 MIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLL--QNSNG 173 Query: 193 SIIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+ L + P+ + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLTLLHSTPYPLLTYVDKLW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R L+ L PL + P I L+L II L+ M QTD+K LIAYSS Sbjct: 233 AAILLKLGGYGMMRILVTLEPLTKELSYPFII-LALWGIIMTGLICMRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI + G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILTQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ALPLMTIWWFLASLANLALPPLPNLMGELMIITSLFNWSWWTIILTGLGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|223471643|ref|YP_002586890.1| NADH dehydrogenase subunit 4 [Stenella attenuata] gi|170027021|gb|ACB06071.1| NADH dehydrogenase subunit 4 [Stenella attenuata] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 208/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L+ ++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLVMLQVLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLACLTNIALPPTINLIGELLVIMSTFSWSNLTIILMGVNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|166368581|ref|YP_001660854.1| NAD(P)H-quinone oxidoreductase subunit D4 [Microcystis aeruginosa NIES-843] gi|166090954|dbj|BAG05662.1| NADH dehydrogenase subunit 4 NdhD4 [Microcystis aeruginosa NIES-843] Length = 490 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 145/420 (34%), Positives = 230/420 (54%), Gaps = 7/420 (1%) Query: 55 FDKGRSSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE 113 FD Q WI++ +Y LGVDG+S L+ L + LT + +S + + Sbjct: 48 FDPSNPQMQFTVNLPWINFLGFNYALGVDGLSFSLLFLNSILTIIALYASGTEVNRP-KF 106 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173 Y L+L + V GAFL+ D+LLF++F+E ++P++ +I +WGG R YA KF LYT Sbjct: 107 YYSLLLLLNAGVAGAFLAQDLLLFFLFYELEIVPLYFLIAIWGGQRRGYAGMKFLLYTAI 166 Query: 174 GSIFMLFAIVVMCWEKKTSSII-DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 +L + + + W + + + Q + I AIKIP+FPFHTWL Sbjct: 167 SGFLVLISFLGLVWLTGADNFAYNPLLSNNLDVKTQLLLLIPLLIGLAIKIPIFPFHTWL 226 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P+AHV+A T SV LAGI+LK+G YG +RF + LF A AP + ++ I+ +Y + Sbjct: 227 PDAHVEASTPVSVLLAGILLKLGTYGLLRFGVGLFLDAWVTLAPWLATIAAISALYGASC 286 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 ++ Q D+KK++AYSSI+HM Y+ + + + + A+ QM+SHGL+S+ LF VGV+Y Sbjct: 287 AIAQKDMKKVVAYSSISHMAYILLAAAATTRLSITAAILQMISHGLISALLFLLVGVVYK 346 Query: 353 RLHTRDIFAYGGLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + +RD+ GL++ +P ++M++ MA+ G+PG GFI EFLV F Sbjct: 347 KTGSRDVDYLRGLLNPERGLPITGMLMILAAMASAGIPGMVGFIAEFLVFRGSFPIFPIQ 406 Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +L L+A+Y L + +V FG E + ++ + ER +A+ + G+ P Sbjct: 407 TLLCLVASGLTAVYFLLMINRVFFGRLTPE-LSRIPRSTWPERFPEIALALFIIVLGLQP 465 >gi|83779155|gb|ABC47398.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 133/392 (33%), Positives = 208/392 (53%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 + +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 NSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITVLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPTAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|238866984|ref|YP_002929473.1| NADH dehydrogenase subunit 4 [Tarsius syrichta] gi|238809337|dbj|BAH69165.1| NADH dehydrogenase subunit 4 [Tarsius syrichta] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 204/377 (54%), Gaps = 12/377 (3%) Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYM 115 ++ ++ Y+ I S D +S L++LTT+L P I++S + + + Y+ Sbjct: 37 TTLSLLNYFLDISTNFSATFSTDSLSTPLLILTTWLLPLMIMASQNHLSKEPLTRKKLYI 96 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFG 174 + L++ +I F + +++ FYI FEA+LIP +II WG +ER+ A F YT G Sbjct: 97 SMLITLQAFLIMTFTATELIFFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIG 156 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHT 230 S+ +L A+V + S+ + P W +W+A +F +K+P++ H Sbjct: 157 SLPLLIALVYT--QNLLGSLNMMINTLIMPSLSNSWSNSILWLACMMAFMVKMPLYGLHL 214 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP AGS+ LA I+LK+GGYG +R + L P +Y A LSL +I S Sbjct: 215 WLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITIILNP-PMEYMAYPFLMLSLWGMIMTS 273 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 274 SICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFIGATTLMIAHGLTSSLLFCLANTN 333 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R+H+R + GL +P A ++ ++ N+ LP T IGE V+M+ F S+ Sbjct: 334 YERVHSRTMALARGLQTLLPLAATWWLLASLTNLALPPTINLIGELSVMMAAFSWSHLTI 393 Query: 411 VLASFGVVLSALYSLWL 427 +L +++ALYSL++ Sbjct: 394 ILVGLNTLITALYSLYM 410 >gi|37620608|gb|AAQ95113.1| NADH dehydrogenase subunit 4 [Mirounga angustirostris] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 209/384 (54%), Gaps = 13/384 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ + L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQLHLSKEPLTRKKLYITMLISLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGMYFLFYTLVGSLPLLVALLFIQNNMGTLNFL 177 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L +++ P + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 178 MLQLLTQ-PM-LNSWSNTLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL + P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMMLNPLTNSMAYPFMI-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQVLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T IGE V+M+ F SN ++ ++++ALYSL++ Sbjct: 355 MAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIIMTGTNIIITALYSLYMLTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G V+ +K RE ++ Sbjct: 415 QRG-KYTHHVKNIKPSFTRENALM 437 >gi|222838752|ref|YP_002586984.1| NADH dehydrogenase subunit 4 [Stenella coeruleoalba] gi|170027035|gb|ACB06084.1| NADH dehydrogenase subunit 4 [Stenella coeruleoalba] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 208/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L+ ++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLVMLQVLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGVNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|222839827|ref|YP_002587043.1| NADH dehydrogenase subunit 4 [Sousa chinensis] gi|170026951|gb|ACB06006.1| NADH dehydrogenase subunit 4 [Sousa chinensis] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 208/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L+ ++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLVMLQVLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSSI+HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSISHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 + + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALIIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGVNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|70987954|gb|AAZ16971.1| NADH dehydrogenase subunit 4 [Bos taurus] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I L+ L+ +I F +++++LF Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLISLQLFLIMTFTAMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LMLQYWVQPVHNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF +R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNSERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|5835998|ref|NP_008760.1|ND4_15098 NADH dehydrogenase subunit 4 [Cavia porcellus] gi|5679807|emb|CAB51827.1| NADH dehydrogenase subunit 4 [Cavia porcellus] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 128/346 (36%), Positives = 196/346 (56%), Gaps = 12/346 (3%) Query: 92 TTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 TT+L P I++S + + R+ Y+ ++L+ +I F + +M++FYI FE +LIP Sbjct: 69 TTWLLPLMIIASQHHLNNETEMRKKLYLTLMVLLQISLIMTFSATEMIMFYILFETTLIP 128 Query: 148 MFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS 206 +II WG +ER+ A F YT GS+ +L A+V + T + + +K P + Sbjct: 129 TLIIITRWGNQAERMKAGLYFLFYTLVGSLPLLIALVYLQNLLGTMNFLLFDYTNKIPPT 188 Query: 207 IQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRF 262 W MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG +R Sbjct: 189 T--WSANMMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRI 246 Query: 263 LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGM 322 L L PL S Y A LSL +I S + + QTD+K LIAYSSI+HM V + I Sbjct: 247 LQLLEPLTS-YMAYPFILLSLWGMIMTSSICLRQTDLKSLIAYSSISHMALVIVAIMIQT 305 Query: 323 KSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMA 382 GA M++HGL SS LF Y+R+H+R + GL +P V ++ ++ Sbjct: 306 PLSFMGATALMIAHGLTSSLLFCLANSNYERIHSRTMILARGLQTVLPLMMVWWLLSSLT 365 Query: 383 NMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 N+ LP T +GE +I+S F SN +L ++++ALY+L+++ Sbjct: 366 NLALPPTINLVGELYIILSTFSWSNLTIILTGLNMLITALYTLYMF 411 >gi|195182445|emb|CAQ68491.1| NADH dehydrogenase subunit 4 [Helarctos malayanus] Length = 459 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/390 (33%), Positives = 205/390 (52%), Gaps = 29/390 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLILLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + + Sbjct: 118 FYILFEATLIPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLH---TQNNLGSL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + M QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NFLVM-------QYWAQPLPNSWSSMFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL S + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLHPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T IGE V+++ F SN L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVVATFSWSNITITLMGTNIIITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SL++ G + V+ +K RE Sbjct: 407 SLYMLITTQRG-KYTDHVKSIKPSFTRENA 435 >gi|121582630|ref|YP_980200.1| NADH dehydrogenase subunit 4 [Lepidophyma flavimaculatum] gi|121309371|dbj|BAF43988.1| NADH dehydrogenase subunit 4 [Lepidophyma flavimaculatum] Length = 456 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 137/426 (32%), Positives = 234/426 (54%), Gaps = 15/426 (3%) Query: 40 ISTINFIFSLFV-WSVFDKGRSSFQMIEYYHWIDY-FCSYHLGVDGISILLVVLTTFLTP 97 +S N++FS + S+F ++ Q++ Y +D+ S +L D S L++L+ +L P Sbjct: 17 LSKPNYLFSTLIPLSIFPALLTT-QLLYYPMNLDHQHISPYLKTDTTSTPLIILSAWLLP 75 Query: 98 FCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 +L+S +Q+ R +++ ++L+S ++ F + D+++F+I FE +LIP +II Sbjct: 76 LMMLASQNHLQQEPTTRKRTFLLTMVILQSALLLTFSASDLIMFFILFETTLIPTLIIIT 135 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII--DLYAMSKFPFSIQYW 210 WG +ER+ A F YT GS+ +L I+ M +S+I + Sbjct: 136 RWGTQAERLTAGTYFLFYTLAGSLPLLVTILYMANTTMNTSMILFMVTTQHTPTTWTANL 195 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 MW+ +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + P + Sbjct: 196 MWLTLLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGILRVSSAMTPTS 255 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 + ++ ++ L+L II S + + QTD+K LIAYSS++HMG V GA+ Sbjct: 256 TLHYPFIV--LALWGIIMTSTICLRQTDLKALIAYSSVSHMGLVIAAALIQTPWSTTGAL 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF + Y+R+HTR + GL +P ++ + N+ LP T Sbjct: 314 IMMIAHGLTSSMLFCLANINYERMHTRTLLLTRGLQLLLPLMTTWWLLANLMNLALPPTM 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK-VQQLKDLSL 449 + E ++I S+F S+T ++ FG +L+A YSL L+ V G K K + ++ ++ Sbjct: 374 NLLAELMIIASMFNWSSTTIIILGFGTLLTATYSLSLFLLVQQG--KLPKHLTNIEPINT 431 Query: 450 RERCMV 455 RE ++ Sbjct: 432 REHMLM 437 >gi|325511664|gb|ADZ22996.1| NADH dehydrogenase subunit 4 [Pseudorca crassidens] gi|325511678|gb|ADZ23009.1| NADH dehydrogenase subunit 4 [Pseudorca crassidens] Length = 459 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 208/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L++++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLIMLQTLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YITFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGMNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|284794725|ref|YP_003412079.1| NADH dehydrogenase subunit 4 [Raiamas senegalensis] gi|284507279|dbj|BAI67705.1| NADH dehydrogenase subunit-4 [Raiamas senegalensis] Length = 460 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 138/396 (34%), Positives = 212/396 (53%), Gaps = 17/396 (4%) Query: 70 WIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMV 125 W D S +L D +S L+VLT +L P IL+S I R Y+ L++ + Sbjct: 50 WTD--SSIYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLAFLQTFL 107 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVV 184 I AF + + ++FYI FEA+LIP +II WG S+R+ A F YT GS+ +L A+++ Sbjct: 108 IMAFGATEFIMFYIMFEATLIPTLIIITRWGNQSDRLNAGVYFLFYTLAGSLPLLVALLL 167 Query: 185 MCWEKKTSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + T S++ +L ++ + I W+ +F +K+P++ H WLP AHV+A Sbjct: 168 LQQSSGTLSMLMLPNTELMLVNNWGHKIW---WVGCLIAFLVKMPLYGVHLWLPKAHVEA 224 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGS+ LA ++LK+GGYG +R + L PL+ Q P + L+L II L+ + QTD+ Sbjct: 225 PVAGSMVLAAVLLKLGGYGMMRIMAVLNPLSQQLVYPFMI-LALWGIIMTGLMCLRQTDL 283 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K LIAYSS+ HMG V GI G GA M++HGL SSALF Y+R H+R + Sbjct: 284 KSLIAYSSVGHMGLVAGGIMIQTPWGFSGATILMVAHGLASSALFCLANTTYERTHSRTM 343 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 G+ P AV + +AN+ +P +GE ++I ++F S L G ++ Sbjct: 344 ILARGMQLIFPLTAVWWFMANLANLAMPPLPNLMGELMIISALFNWSPWTIALTGTGTLI 403 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +A YSL+++ + G + L RE ++ Sbjct: 404 TASYSLYMFLTLQRGQLPGHSI-NLPPFHTREHLLI 438 >gi|56692364|ref|YP_163903.1| NADH dehydrogenase subunit 4 [Anguilla celebesensis] gi|56565382|dbj|BAD78058.1| NADH dehydrogenase subunits 4 [Anguilla celebesensis] Length = 460 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMRLEPINRQRSYITLLISLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPLILSSWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPTLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTP-NHIIGLEPSHTREHLLI 438 >gi|62086646|dbj|BAD91742.1| NADH dehydrogenase subunit 4 [Eschrichtius robustus] Length = 459 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 127/356 (35%), Positives = 207/356 (58%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L++++I F + +++LF Sbjct: 59 DPLSAPLLILTMWLLPLMLMASQSHLAKEPPVRKKLYVTMLIMLQTLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALLYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAQPLSTSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITPMLGPL-TEHMAYPFLMLSLWGMVMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MS+F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSIFSWSNPTILLMGTNIVITALYSLYM 410 >gi|55583394|ref|YP_138249.1| NADH dehydrogenase subunit 4 [Myxocyprinus asiaticus] gi|41216067|gb|AAR99682.1| NADH dehydrogenase subunit 4 [Myxocyprinus asiaticus] Length = 460 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 215/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I + + I L L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHITPEPISRQRLNITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEMIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++Q W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLQSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILVQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV V +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFVANLANLALPPLPNLMGELMIITTMFNWSPWTITLTGTGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPAP-SHIMGLSPFHTREHLLM 438 >gi|16357075|ref|NP_443407.1|ND4_15821 NADH dehydrogenase subunit 4 [Zenopsis nebulosus] gi|16267206|dbj|BAB70335.1| NADH dehydrogenase subunit 4 [Zenopsis nebulosus] Length = 460 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 136/360 (37%), Positives = 208/360 (57%), Gaps = 14/360 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDM 134 +G D +S L++LT +L P IL+S + QE R Y+ L+ +I AF S ++ Sbjct: 57 MGTDPLSTPLLILTCWLLPLMILASQNHMAQEPLSRQRTYITLLASLQFFLILAFSSTEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYVMFEATLIPTLLIITRWGNQKERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLS 176 Query: 194 II-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ DL A+++ +S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 MLITQYNDL-ALTQ-SWSHKIW-WAGCMIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVTLNPLSKEMIFPFII-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 MP A ++AN+ LP +GE ++I S+F S +L G +++A YSL+L+ Sbjct: 353 MPLMATWWFTASLANLALPPLPNLMGEIMIITSLFNWSWFTIILTGAGTLITAGYSLYLF 412 >gi|294679511|gb|ADF29554.1| NADH dehydrogenase subunit 4 [Pseudorca crassidens] Length = 459 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 208/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L++++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLIMLQTLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YITFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGMNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|110432870|gb|ABG74116.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] Length = 459 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/402 (32%), Positives = 210/402 (52%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKEPWERKKHFLFTLISLQLFLIMTFTTTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYTGTLNLFMMTYWSQEMPNSWSSSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITIILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM VT+ I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVTVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN ++ ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIIMTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G S L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGKSSYHTHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|47588157|gb|AAT35916.1| NADH dehydrogenase subunit 4 [Cheirogaleus major] Length = 458 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 212/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + Y+ + L++ +I F + +++LF Sbjct: 58 DSLSSPLLMLTVWLLPLMIMASQHHLMKETWTRKKSYLSMLIFLQTFLIMTFTATELILF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 118 YILFEATLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALI---YTQNSLGSLN 174 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + M+ + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 175 MTTMTLCNQELTNSWSNGLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 234 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P+ ++Y A + L L +I S + + QTD+K LIAYSS++HM Sbjct: 235 LKLGGYGMMRITTILDPM-TKYLAYPLLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 293 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 294 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERTHSRTMLLARGLQSFLPL 353 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 354 MATWWLLASLTNLALPPFINLIGELLVIMASFSWSNITIILTGLNMLITALYSLYMLTVT 413 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G L RE + + P+ +LT+ Sbjct: 414 QRG-KPTYHTHNLNPSLTRENTLMSMHMLPVILLTL 448 >gi|190349422|ref|YP_001974601.1| NADH dehydrogenase subunit 4 [Platichthys stellatus] gi|125657054|gb|ABN48621.1| NADH dehydrogenase subunit 4 [Platichthys stellatus] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 135/385 (35%), Positives = 211/385 (54%), Gaps = 11/385 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K R Y+ L+ +I AF + ++ Sbjct: 57 MATDSLSTPLLVLTCWLLPLMILASQKHTASEPLGRQRMYITLLASLQFFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTSGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L+ ++ ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLHYGDPLALSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P I F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMTMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQSPWGLTGALTLMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQVALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 355 LMATWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTLALTGSGTLITAGYSLYMFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G V L+ RE ++ Sbjct: 415 TQRGPLPTH-VIALEPSHTREHLLI 438 >gi|153581778|emb|CAO79704.1| NADH dehydrogenase 4 [Hippoglossus stenolepis] gi|153581792|emb|CAO79717.1| NADH dehydrogenase 4 [Hippoglossus stenolepis] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 136/385 (35%), Positives = 208/385 (54%), Gaps = 11/385 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K R Y+ L+ +I AF + ++ Sbjct: 57 MATDSLSTPLLVLTCWLLPLMILASQKHTALEPLSRQRMYITLLASLQFFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 VMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTSGTLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L+ S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLHYTDPLALSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P I F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMTMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQSPWGLTGALTLMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQVALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 355 LMATWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G V L+ RE ++ Sbjct: 415 TQRGPLPTH-VIALEPSHTREHLLI 438 >gi|5835563|ref|NP_008415.1|ND4_13947 NADH dehydrogenase subunit 4 [Ovis aries] gi|6093574|sp|O78755|NU4M_SHEEP RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|3445515|gb|AAD10104.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|56713975|gb|AAW23982.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|86264070|gb|ABC87772.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|158187245|gb|ABW22863.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|158187259|gb|ABW22876.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|158187273|gb|ABW22889.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|158187287|gb|ABW22902.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|158187301|gb|ABW22915.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|158187315|gb|ABW22928.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|298110631|gb|ADI57602.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|298110645|gb|ADI57615.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|298110659|gb|ADI57628.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|298110673|gb|ADI57641.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|298110771|gb|ADI57732.1| NADH dehydrogenase subunit 4 [Ovis aries musimon] gi|298110785|gb|ADI57745.1| NADH dehydrogenase subunit 4 [Ovis aries musimon] Length = 459 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 204/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ L+L + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLARKKLFISMLILLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI--QNTMGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPMPNSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITLLLNPI-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPSINLIGELFVVMSTFSWSNITIILMGLNMVITALYSLYM 410 >gi|221144522|ref|YP_002519608.1| NADH dehydrogenase subunit 4 [Pervagor janthinosoma] gi|219806805|dbj|BAH10456.1| NADH dehydrogenase subunit 4 [Pervagor janthinosoma] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 204/371 (54%), Gaps = 10/371 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 L D +S L+VL+ +L P IL+S + R Y+ L+ +I AF + ++ Sbjct: 57 LATDPLSTPLLVLSCWLLPLMILASQNHVAPEPVTRQRIYISLLTSLQLALIMAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 LLF++ FEA+LIP ++I WG +ER++A F YT GS+ +L A++ + T S Sbjct: 117 LLFFVMFEATLIPTLILITRWGNQTERLHAGTYFLFYTLAGSLPLLVALLHLYASTDTLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L S ++W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQHSEPLHLSTVEDKFW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L+ L PL + P + L+L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMLMMLDPLTKELSYPFLI-LALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI + G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVVAGILTQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQAILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + ++AN+ LP +GE ++I S+ S+ L G++++A YSL+++ Sbjct: 355 LMTAWWFISSLANLALPPLPNLMGEIMIITSLINWSSWTIALTGAGMLITAGYSLYMFLM 414 Query: 431 VVFGVSKCEKV 441 G + V Sbjct: 415 TQRGKTPTHLV 425 >gi|56692494|ref|YP_163955.1| NADH dehydrogenase subunit 4 [Anguilla megastoma] gi|56565438|dbj|BAD78110.1| NADH dehydrogenase subunits 4 [Anguilla megastoma] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLSCWLLPLMILASQNHMRLEPINRQRSYITLLISLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPLILSSWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTP-NHIIALEPSHTREHLLI 438 >gi|119360381|ref|YP_913285.1| NADH dehydrogenase subunit 4 [Hemibarbus barbus] gi|119224963|dbj|BAF41346.1| NADH dehydrogenase subunit 4 [Hemibarbus barbus] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHINPEPVSRQRMYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYSQPLLMDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAAWWFIANLANLALPPLPNLMGELMIISTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-IMKLPPFHTREHLLM 438 >gi|325126840|ref|YP_004286077.1| NADH dehydrogenase subunit 4 [Nibea albiflora] gi|324023014|gb|ADY15576.1| NADH dehydrogenase subunit 4 [Nibea albiflora] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 203/369 (55%), Gaps = 10/369 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAF 129 F + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNSYMATDPLSTPLLVLTCWLLPLMILASQNHTASEPTNRQRMYITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L + P + + W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 AGTLSLLTLQFSNPVPLTTVADKIW-WVGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL + P I F +L ++ L+ + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRVLPMLEPLTKELSYPFIIF-ALWGVVMTGLICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILVQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P ++AN+ LP F+GE ++I S+F S +L G +++A YSL Sbjct: 350 QVALPLMGTWWFFASLANLALPPLPNFMGELMIITSLFNWSGWTLLLTGAGTLITAGYSL 409 Query: 426 WLYRKVVFG 434 +++ G Sbjct: 410 YMFVTTQRG 418 >gi|46917228|dbj|BAD18022.1| NADH dehydrogenase subunits 4 [Leiognathus decorus] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 201/364 (55%), Gaps = 10/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + R Y+ L++++I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQHHMAPEPLTRQRAYITLLTSLQALLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++V+ T S Sbjct: 117 MMFYITFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLLSSLPLLVALLVLQNTTGTLS 176 Query: 194 IIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L S+ P F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 FLTLQFNSQMPLASFTDKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L L PL Q P I L+L +I + + Q+D+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRILPLLEPLTKQLSYPFIL-LALWGMIMTGSICLRQSDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G GA+ M++HGL SSALF Y+R H R + GL P Sbjct: 295 MGLVVAGALLQTPWSFSGALILMIAHGLTSSALFCLANTNYERTHNRTMLLTRGLQTAFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A +F++AN+ LP +GE +VI S+F S +L G +++A YSL+++ Sbjct: 355 LMATWWFLFSLANLALPPLPNLMGELMVISSLFNWSPWTLILTGAGTLITAAYSLYMFLT 414 Query: 431 VVFG 434 G Sbjct: 415 TQRG 418 >gi|25057665|ref|NP_739915.1| NADH dehydrogenase subunit 4 [Ostichthys japonicus] gi|25005883|dbj|BAC23511.1| NADH dehydrogenase subunit 4 [Ostichthys japonicus] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRMYISLLTTLQIFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IILFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLMGSLPLLVALLLLQNNTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYVKPLQLLSLGDKLW-WAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVVLDPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGLTGALLLMIAHGLASSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWSLLLTGAGTLITAGYSLYMF 412 >gi|5835117|ref|NP_007169.1|ND4_10543 NADH dehydrogenase subunit 4 [Equus caballus] gi|1352570|sp|P48655|NU4M_HORSE RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|577581|emb|CAA56088.1| NADH dehydrogenase [Equus caballus] Length = 459 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 205/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ +L++ +I F + +++ F Sbjct: 59 DPLSAPLLVLTTWLLPLMLMASQHHLSKEPLIRKKLYITMLTMLQTFLIMTFTATELISF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ SI + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALI---------SIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L F IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 LTGSLNF-LLIQYWNQALPDSWSNIFLWLACMMAFMVKMPVYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L P S + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTMLNPQTS-FMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE V+MS F SN +L + ++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPSINLIGELFVVMSSFSWSNITIILMGANITITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINSIKPSFTRENALM 437 >gi|213136287|gb|ACJ43826.1| NADH dehydrogenase subunit 4 [Pleurodeles waltl] Length = 459 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 140/414 (33%), Positives = 224/414 (54%), Gaps = 17/414 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 + ++ +D +S L+VLT +L P L+S ++ N R Y+I +L+ +I AF Sbjct: 52 TNLYMTIDQVSSPLMVLTCWLLPLMTLASQNHLKMNPLTRQRTYLIMLALLQMSLITAFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 S +++LFYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + Sbjct: 112 STELILFYIAFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLTLQATL 171 Query: 190 KTSSI--IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S+ I+L + +W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLSLTLINLMEPMMLYNNSDKMLWLACLLAFMVKMPLYGIHLWLPKAHVEAPIAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L PL P + L+L ++ L+ + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGIIRITTILTPLTKDLSYPFMI-LALWGVVMTGLICLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V I + GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 291 VSHMGLVIAAIMIQTPWSMTGAVILMISHGLISSALFCLANLNYERTHSRTLLLTRGAQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++NM LP + GE +++S+F S ++ G +++A Y+L++ Sbjct: 351 ILPLMATWWLLANLSNMALPPSMNLWGELTIMVSLFNWSPWTILITGAGTLITASYTLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTVFFGIYPVPIRDTFS 477 + G + + L RE + + P+A+L + P I TFS Sbjct: 411 FLTTQRGQTP-PHLNLLSPAYTREHLLMALHLIPMALLI----LKPAIISGTFS 459 >gi|190349366|ref|YP_001974705.1| NADH dehydrogenase subunit 4 [Varanus salvator] gi|189182401|gb|ACD81918.1| NADH dehydrogenase subunit 4 [Varanus salvator] Length = 457 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 126/362 (34%), Positives = 198/362 (54%), Gaps = 8/362 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + + +D S L+VL+ +L P ++S ++ R ++I L++ ++ F Sbjct: 52 FLNLSMSIDQTSASLLVLSCWLLPIMAMASQNHLKHEPTTRKRMFLITITTLQTFLLMTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +++LFYI EA+LIP II WG +ER+ A F YT S+ +L +I+ + Sbjct: 112 TANNLILFYISXEATLIPTLTIITRWGSQAERLKAGTYFMFYTLASSLPLLISILYLNSS 171 Query: 189 KKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T I ++ P Q ++W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 SLTLLIPEILPHPLQPTKTLSQAFLWFGCLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LKMGGYG IR L L PL P++ ++ II SL + QTD+K LIAYS Sbjct: 232 LAAILLKMGGYGMIRILPTLTPLTPSLLFPLLT-MATWGIIMTSLTCLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V I + G+ G+M M++HGL SS LF Y++ TR + GL Sbjct: 291 SVSHMGLVISAILTQTNLGLTGSMLLMIAHGLTSSLLFCLANTNYEQTQTRTLLITRGLH 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + + ++ANM LP + +GE +I S+F S +LA G +L+A Y+L+ Sbjct: 351 IVLPLMTLWWLYASLANMALPPSINLMGELFIITSLFSWSPLTIILAGTGTLLTASYTLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|299823714|ref|YP_003734507.1| NADH dehydrogenase subunit 4 [Brevoortia tyrannus] gi|299758121|dbj|BAJ09972.1| NADH dehydrogenase subunit 4 [Brevoortia tyrannus] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 208/387 (53%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L +D +S L+VLT +L P IL+S Q R Y+ L++ +I AF + + Sbjct: 56 YLAIDPLSAPLLVLTCWLLPLMILASQNHTQSEPASRQRMYLSLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTL--QNSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMITLNFCQPLTLVSWGDKIWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRMTTVLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 293 SHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTSYERTHSRTMVLARGMQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTATWWFIANLANLALPPLPNLMGEVMIITTMFNWSPWTLILTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 413 LMTQRGPVPAH-ITGLTPYHTREHLLI 438 >gi|148922666|ref|YP_001293745.1| NADH dehydrogenase subunit 4 [Etrumeus teres] gi|148762614|dbj|BAF64058.1| NADH dehydrogenase subunit 4 [Etrumeus teres] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 202/364 (55%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 + ++ +D +S L+VLT +L P IL+S + R Y+ L+S +I AF Sbjct: 52 LSNNYMAIDPLSSPLLVLTCWLLPLMILASQNHTRLEPTSRQRTYISLLASLQSFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 112 GATEIIMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLAL--Q 169 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T S+ L P ++ W W +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 SSTGSLSMLTLNFNQPLTLISWGDKIWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMIRMTTILDPLTKEMAYPFIT-LALWGIIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVASGILIQTPWGLTGAIILMIAHGLVSSALFCLANTSYERTHSRTMLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + P A + +AN+ LP +GE ++I ++F S +L G +++A YS Sbjct: 349 MQMLFPLTATWWFIANLANLALPPLPNLMGEVMIITTMFNWSPWTLILTGLGTLITAGYS 408 Query: 425 LWLY 428 L+L+ Sbjct: 409 LYLF 412 >gi|292496246|ref|YP_003541119.1| NADH dehydrogenase subunit 4 [Saccostrea mordax] gi|226247306|gb|ACO40236.1| NADH dehydrogenase subunit 4 [Saccostrea mordax] Length = 449 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 136/381 (35%), Positives = 209/381 (54%), Gaps = 8/381 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWK--SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 D S +V LT ++ IL+S +++ +++ ++ L+L ++G FL M LFYI Sbjct: 58 DIFSASMVTLTFWVCGVSILASGSLGTLRGDYKSFVWLMLLLCFFLVGCFLVNMMTLFYI 117 Query: 140 FFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198 FE++LIPM II +WG ERI A YT GS+ +LF I+ M E +T S + Sbjct: 118 LFESTLIPMVAIIAIWGQQPERIPAIRYISAYTVGGSLPLLFIIIFM--ECQTGSSFIWF 175 Query: 199 AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG 258 K S+ +W W+ F F +K P++P HTWLP AHVQAP GSV LAGI+LK+GGYG Sbjct: 176 IAPKH--SMDWWFWVMCFSGFLVKFPIYPAHTWLPKAHVQAPVGGSVVLAGILLKLGGYG 233 Query: 259 CIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318 +R ++ +F + + F + LSL +YA+ + Q+D+KKLIAYSS++HM + IG+ Sbjct: 234 ILRMMM-VFSYSLEKFGLFVISLSLGGSVYAAFMCSRQSDVKKLIAYSSVSHMAFCIIGL 292 Query: 319 FSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMV 378 FS ++ G+ A ++ HG +SS LF G+ + HTR++ G P + +V Sbjct: 293 FSCLEVGLTSAFIMLMGHGFISSGLFALCGMSSELTHTRNLKMMSGACRTTPILTSMWLV 352 Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC 438 F M N+G+P I E L ++S + S +YS LY ++V G Sbjct: 353 FIMMNLGVPPCPTIISEVLAVVSAISVGPWSFLFLVVYFFASGVYSFGLYCQLVHGPVSE 412 Query: 439 EKVQQLKDLSLRERCMVYPIA 459 E +++S R+ V+ +A Sbjct: 413 EDPVMFEEVSPRDMLSVFVLA 433 >gi|242624379|ref|YP_003002296.1| NADH dehydrogenase subunit 4 [Branchiostegus japonicus] gi|193875941|gb|ACF24611.1| NADH dehydrogenase subunit 4 [Branchiostegus japonicus] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 210/367 (57%), Gaps = 13/367 (3%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVI 126 + Y Y D IS L+VLTT+L P IL+S + R Y+ L+ +I Sbjct: 50 MSYLTPYT-ATDAISAPLLVLTTWLLPLMILASQAHLHHEPLSRQRMYVSLLASLQFFLI 108 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AF + ++++FYI FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 109 LAFSATEIIMFYIMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL 168 Query: 186 CWEKKTSSIIDLY----AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 T S++ L AMS +S ++W W+A +F +K+P++ H WLP AHV+AP Sbjct: 169 QNTTGTLSLLTLQYSELAMSG-SYSSKFW-WVALMLAFLVKMPLYGAHLWLPKAHVEAPV 226 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA ++LK+GGYG IR L+ L P+ Q P I L+L +I + QTD+K Sbjct: 227 AGSMILAAVLLKLGGYGMIRVLMMLEPVTKQLCYPFII-LALWGVIMTGSTCLRQTDLKS 285 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG V GI + G+ G++ M+SHGL SSALF Y+R H+R + Sbjct: 286 LIAYSSVSHMGLVIAGILTQSPWGITGSLILMISHGLTSSALFCLANTNYERTHSRTMLL 345 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GL +P A+ + ++AN+ LP +GE ++I ++F S L G +++A Sbjct: 346 ARGLQAALPLMAMWWFLASLANLALPPLPNLMGELMIITAMFNWSWWTIALTGAGTLITA 405 Query: 422 LYSLWLY 428 YSL+++ Sbjct: 406 GYSLYMF 412 >gi|154090903|ref|YP_001403138.1| NADH dehydrogenase subunit 4 [Hippoglossus hippoglossus] gi|153581694|emb|CAO79626.1| NADH dehydrogenase 4 [Hippoglossus hippoglossus] gi|153581708|emb|CAO79639.1| NADH dehydrogenase 4 [Hippoglossus hippoglossus] gi|153581736|emb|CAO79665.1| NADH dehydrogenase 4 [Hippoglossus hippoglossus] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 136/385 (35%), Positives = 208/385 (54%), Gaps = 11/385 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K R Y+ L+ +I AF + ++ Sbjct: 57 MATDSLSTPLLVLTCWLLPLMILASQKHTALEPLSRQRMYITLLASLQFFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 VMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTSGTLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L+ S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLHYTDPLALSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P I F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMTMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQSPWGLTGALTLMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQVALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 355 LMATWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G V L+ RE ++ Sbjct: 415 TQRGPLPTH-VIALEPSHTREHLLI 438 >gi|154090931|ref|YP_001403151.1| NADH dehydrogenase subunit 4 [Hippoglossus stenolepis] gi|153581750|emb|CAO79678.1| NADH dehydrogenase 4 [Hippoglossus stenolepis] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 136/385 (35%), Positives = 208/385 (54%), Gaps = 11/385 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K R Y+ L+ +I AF + ++ Sbjct: 57 MATDSLSTPLLVLTCWLLPLMILASQKHTALEPLSRQRMYITLLASLQFFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 VMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTSGTLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L+ S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLHYTDPLALSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P I F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMTMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQSPWGLTGALTLMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQVALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 355 LMATWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G V L+ RE ++ Sbjct: 415 TQRGPIPTH-VIALEPSHTREHLLI 438 >gi|165932503|ref|YP_001650862.1| NADH dehydrogenase subunit 4 [Fistularia commersonii] gi|154758858|dbj|BAF74999.1| NADH dehydrogenase subunit 4 [Fistularia commersonii] Length = 460 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 135/359 (37%), Positives = 204/359 (56%), Gaps = 12/359 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLSLDM 134 L D +S L+VLT +L P IL+S + QE R Y+ L+ +I AF + ++ Sbjct: 57 LATDSLSTPLLVLTCWLLPLMILASQNHTAQEPLNRQRTYISLLTSLQVFLIMAFGATEV 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 ILFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTTGTLS 176 Query: 194 IIDLYAMSKFP----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 ++ L+ S P ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 MLTLH-YSSCPELSSYADKLW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIMVMLDPLTKELSYPFII-LALWGIIMTGSICLRQTDVKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE L+I S+F + L G +++A YSL+L+ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELLIISSLFMWTPWTIALTGLGTLITAGYSLYLF 412 >gi|298110827|gb|ADI57784.1| NADH dehydrogenase subunit 4 [Ovis ammon] gi|298110841|gb|ADI57797.1| NADH dehydrogenase subunit 4 [Ovis vignei] Length = 459 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 204/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ L+L + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLARKKLFISMLILLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI--QNTMGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPMPNSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITLLLNPI-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPSINLIGELFVVMSTFSWSNITIILMGLNMVITALYSLYM 410 >gi|295641071|gb|ADG22621.1| NADH dehydrogenase subunit 4 [Mustela sibirica] Length = 459 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 208/389 (53%), Gaps = 31/389 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ +I F + ++++F Sbjct: 59 DSLSTPLLVLTTWLLPLMLMASQHHLSKETLTRKKLYITMLVMLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + ++ Sbjct: 119 YILFEATLMPTLVIITRWGNQTERLSAGLYFLFYTLVGSLPLLIALLW---LQNNLGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L M QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 LLIM-------QYWAQPLPNSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL S Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRVTMLLNPLTS-YMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIMAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T +GE V+M+ F SN L ++++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIALMGVNIIITALYS 407 Query: 425 LWLYRKVVFGVSKC-EKVQQLKDLSLRER 452 LY + KC ++ +K RE Sbjct: 408 --LYMLITTQRGKCTHHIKNIKPSFTREN 434 >gi|226463955|ref|YP_002791207.1| NADH dehydrogenase subunit 4 [Chamaeleo monachus] gi|124055060|gb|ABM89678.1| NADH dehydrogenase subunit 4 [Chamaeleo monachus] Length = 450 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 129/393 (32%), Positives = 214/393 (54%), Gaps = 16/393 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIGAFLSLD 133 +L +D IS L+ L+ +L P IL+S + Q R +++ L++++ A S + Sbjct: 55 YLSIDQISAPLLTLSFWLLPIAILASQNHLKLTTQMQTRMFLMCLTTLQALLTMALSSTN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LF+I FEA+LIP +II WG ER+ A F YT S+ +L A+++M + Sbjct: 115 LILFFIMFEATLIPTMMIITRWGSQKERLTAGMYFMFYTLASSMPLLIALLMMNNQMDNL 174 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + + L M+ + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 175 NTL-LTPMTTYKPNTT--LWLACTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 231 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + P+ L P I ++L +I SL+ + Q D+K LIAYSS++HMG Sbjct: 232 KLGGYGMMR-ISPMLCLTKTLCYPFII-MALWGMIMTSLICLRQPDLKSLIAYSSVSHMG 289 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V S + GAM M++HG+ SS LF ++Y+R HTR + G+ +P Sbjct: 290 LVVSATMIQTPSSLTGAMILMVAHGITSSMLFCLANMMYERTHTRTLTMMQGIQTTLPLM 349 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ + NM +P T +GE + ++F S +L ++A+YS++++ + Sbjct: 350 TAFWLMANLTNMAIPPTINLLGEITITTTMFNWSPPTLILTGSAATITAIYSMYMFSAIQ 409 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVL 461 G K +K L RE + V P+A+L Sbjct: 410 QG--KLQKDMMLPPAQTREYLVLILHVMPMALL 440 >gi|296531234|dbj|BAJ08082.1| NADH dehydrogenase subunit 4 [Calumma parsonii] Length = 450 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 125/396 (31%), Positives = 217/396 (54%), Gaps = 12/396 (3%) Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMI 116 S Q ++ ++ + + ++ +D IS L+ L+ +L P I++S ++ + +++ Sbjct: 38 SLQWLKIPLTLNKYSNTYMSIDQISAPLLTLSYWLLPIAIMASQNHLKHTTLVQKQMFLM 97 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGS 175 L++ + AF S +++LF+I FEA+LIP +II WG SER+ A F LYT S Sbjct: 98 CLAALQTFLTLAFSSTNLILFFIMFEATLIPTMMIITRWGSQSERLTAGMYFMLYTLISS 157 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 + +L A+++ +I+ LY ++ P +I +W+A +F +K+P++ H WLP A Sbjct: 158 MPLLIALLISNNMMDNLNIMLLYMINAKPNTI---IWLACTMAFMVKMPLYGLHLWLPKA 214 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP AGS+ LA I+LK+GGYG +R L+ + ++ +I L+L +I SL+ + Sbjct: 215 HVEAPIAGSMVLAAILLKLGGYGMMRISPMLYQIQMLHYPFII--LALWGMIMTSLICLR 272 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+K LIAYSS++HMG V + + GAM M++HG+ SS LF ++Y+R + Sbjct: 273 QPDLKSLIAYSSVSHMGLVVTATMIQTPASLTGAMILMVAHGITSSMLFCLANMMYERTN 332 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR + G+ MP ++ + NM +P T +GE ++ + F S +L Sbjct: 333 TRTMAMMQGIQTTMPLMTTFWLLANLTNMAIPPTINLLGEIMITTATFNWSPLTLILTGS 392 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 ++A+YS+ ++ G K +K + RE Sbjct: 393 TAAITAIYSMHMFSSTQQG--KLQKDMIINPAQTRE 426 >gi|289474185|gb|ADC97742.1| NADH dehydrogenase subunit 4 [Megaptera novaeangliae] Length = 459 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 128/356 (35%), Positives = 207/356 (58%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + R+ Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLIKEPPIRKKLYITMLITLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALLYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAQPLSTSWSNIFLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSVLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MSVF SN +L +V++ALY+L++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSVFSWSNPTIILMGTNIVITALYTLYM 410 >gi|27733897|ref|NP_775729.1| NADH dehydrogenase subunit 4 [Euthynnus alletteratus] gi|27597262|dbj|BAC55175.1| ND4 [Euthynnus alletteratus] Length = 460 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 204/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPVNRQRMYITLLTSLQFFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L YA M F+ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYAAPMQMTSFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S+ L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSHWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|312233345|ref|YP_004021558.1| NADH dehydrogenase subunit 4 [Alosa sapidissima] gi|309321593|gb|ADO65548.1| NADH dehydrogenase subunit 4 [Alosa sapidissima] Length = 460 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 134/386 (34%), Positives = 209/386 (54%), Gaps = 11/386 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S Q R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSAPLLVLTCWLLPLMILASQNHTQSEPASRQRMYLSLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLQNSTGSL 175 Query: 193 SIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L ++ + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMITLNFCQPLTLISWGDKIW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRMTTVLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 294 HMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTSYERTHSRTMVLARGMQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 354 PLTATWWFIANLANLALPPLPNLMGEIMIITTMFNWSPWTLILTGLGTLITAGYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 414 MTQRGPVPAH-ITGLTPYHTREHLLI 438 >gi|221145417|ref|YP_002519634.1| NADH dehydrogenase subunit 4 [Balistoides conspicillum] gi|219806833|dbj|BAH10209.1| NADH dehydrogenase subunit 4 [Balistoides conspicillum] Length = 460 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 136/361 (37%), Positives = 209/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 + +L DG+S L+VLT +L P IL+S + Q R Y+ L+ +I AF + Sbjct: 54 NLYLATDGLSTPLLVLTCWLLPLMILASQNHLIPEPQSRQRMYISLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEILMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTTG 173 Query: 191 TSSIIDLYAM-SKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L M S +P ++ ++W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQHMTSAYPDTWANKFW-WTGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLTILDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A+ + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMAMWWFLASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|195933659|ref|YP_002117954.1| NADH dehydrogenase subunit 4 [Ursus thibetanus thibetanus] gi|146221815|gb|ABQ12044.1| NADH dehydrogenase subunit 4 [Ursus thibetanus thibetanus] Length = 459 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 209/381 (54%), Gaps = 11/381 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQSHLSKETLTRKKLYITMLVLLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ T + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLHTQNNLGTLNFL 177 Query: 196 DL-YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 178 MMQYWIQPLPNSWSSVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITTLLDPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAVLIQTPWSYMGATALMVAHGLTSSMLFCLANSNYERVHSRTMILARGLQTLLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP T IGE V+++ F SN L ++++ALYS LY + Sbjct: 357 AWWLLASLTNLALPPTINLIGELFVVVATFSWSNITITLMGANIIITALYS--LYMLITT 414 Query: 434 GVSKC-EKVQQLKDLSLRERC 453 KC + ++ +K RE Sbjct: 415 QRGKCTDHIKSIKPSFTRENA 435 >gi|147917510|gb|ABQ52617.1| NADH dehydrogenase subunit 4 [Equus caballus] Length = 459 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 132/391 (33%), Positives = 205/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ +L++ +I F + +++ F Sbjct: 59 DPLSAPLLVLTTWLLPLMLMASQHHLSKEPLIRKKLYITMLTMLQTFLIMTFTATELISF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ SI + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALI---------SIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L F IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 LTGSLNF-LLIQYWNQALPDSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + +A I+LK+GGYG +R L P S + A LSL +I S + + QTD+K LIA Sbjct: 229 MVMAAILLKLGGYGMLRITTMLNPQTS-FMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE V+MS F SN +L + ++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPSINLIGELFVVMSSFSWSNITIILMGANITITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINSIKPSFTRENALM 437 >gi|255764542|ref|YP_003097649.1| NADH dehydrogenase subunit 4 [Xiphophorus hellerii] gi|208436415|gb|ACI28647.1| NADH dehydrogenase subunit 4 [Xiphophorus hellerii] gi|208436443|gb|ACI28673.1| NADH dehydrogenase subunit 4 [Xiphophorus hellerii] Length = 461 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 208/369 (56%), Gaps = 10/369 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI---QENFREYMIAFLV-LESMVIGAF 129 F + + D IS L+VLT +L P +L+S + N + I+ L+ L+ +I AF Sbjct: 52 FLNCFMASDPISTPLLVLTCWLLPLMVLASQNHLMLEPTNRQRIFISLLISLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP +II WG ER+ A F YT GS+ +L A++++ Sbjct: 112 SATELIMFYIMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDL-YAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S L Y +P ++ + W W+A +F IK+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSFFTLPYLPPTYPALWAHKIW-WVACLLAFLIKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVILDPLTKELNYPFII-LALWGVIMTGSICLRQTDLKALIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V I + GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAAILIQTPWALTGALILMIAHGLTSSALFCLANTNYERSHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A+ T+AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QTLLPLAAIWWFTATLANLALPPLPNLMGELMIITSLFNWSMWTLILTGLGTLITAGYSL 409 Query: 426 WLYRKVVFG 434 +++ G Sbjct: 410 YMFLTTQRG 418 >gi|25057495|ref|NP_739668.1| NADH dehydrogenase subunit 4 [Cataetyx rubrirostris] gi|25005547|dbj|BAC23212.1| NADH dehydrogenase subunit 4 [Cataetyx rubrirostris] Length = 460 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 204/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + N + I L+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHTAQKPANRQRVFITLLISLQFFLILAFSATEV 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTLS 176 Query: 194 IIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLPYSETIQLSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L+ L PL + P I F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMLIVLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAAAILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE ++I S+F S VL G +++A YSL++Y Sbjct: 355 LMASWWFISSLANLALPPLPNLMGELMIITSLFNWSPWTLVLTGAGTLITAGYSLYMY 412 >gi|269994314|dbj|BAI50306.1| NADH dehydrogenase subunit 4 [Rinoctes nasutus] Length = 473 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRMYISLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L P + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLQYSQPLPLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLDPLSKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L Sbjct: 352 LFPLTAVWWLTANLANLALPPLPNLMGEIMIITTMFNWSPWTLALTGLGTLITAGYSLYL 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|159524420|ref|YP_001542738.1| NADH dehydrogenase subunit 4 [Tremarctos ornatus] gi|121592354|gb|ABM63287.1| NADH dehydrogenase subunit 4 [Tremarctos ornatus] Length = 459 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 130/382 (34%), Positives = 209/382 (54%), Gaps = 13/382 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P +++S + + + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLVLTTWLLPLMLMASQSHLSKETLTRKKLYITMLILLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLHT--QNNLGSLN 175 Query: 196 DL---YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLMMQYWIQPLPSSWSSIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL + + A LSL +I S + + Q D+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQADLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + + GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRIMILARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 355 MAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNATIILMGTNIIITALYSLYMLITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERC 453 G + V+ +K RE Sbjct: 415 QRG-KYTDHVKNIKPSFTRENA 435 >gi|39981065|gb|AAR33062.1| NADH dehydrogenase subunit 4 [Eubalaena australis] Length = 459 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 205/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + R+ Y+ ++L+ ++I F + +++LF Sbjct: 59 DPLSTRLLMLTMWLLPLMLMASQSHLLKEPPIRKKLYITMLIMLQVLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALIYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAQPLSTSWSNIFLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARGLQIFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V+MS F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVVMSAFSWSNPTILLMGTNIVITALYSLYM 410 >gi|256985318|ref|YP_003162755.1| NADH dehydrogenase subunit 4 [Microcanthus strigatus] gi|256542245|dbj|BAH98086.1| NADH dehydrogenase subunit 4 [Microcanthus strigatus] Length = 460 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 208/361 (57%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FREYMIAFLV--LESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R+ M L+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHMAPEPLSRQRMFITLLTSLQLFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++V+ + T Sbjct: 116 IIMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLVL--QNNTG 173 Query: 193 SIIDLYAMSKFPF-----SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 ++ L +PF + + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSYPFLPNTYADKLW-WAACLLAFLVKMPLYGTHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL + P I F +L +I S + + QTD+K +IAYSS Sbjct: 233 AAVLLKLGGYGMMRMMTMLEPLTKELSYPFIIF-ALWGVIMTSSICLRQTDLKSMIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI + G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVIGGILTQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + ++AN+ LP +GE ++I ++F S +L G +++A YSL++ Sbjct: 352 ALPLTATWWFIASLANLALPPLPNLMGELMIITALFNWSWWTLMLTGTGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|124055214|gb|ABM89821.1| NADH dehydrogenase subunit 4 [Chamaeleo chamaeleon] Length = 450 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 207/379 (54%), Gaps = 12/379 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIGAFLSLD 133 +L VD IS L+ L+ +L P IL+S S Q R + + L++++ + S + Sbjct: 55 YLSVDQISAPLLTLSYWLLPIAILASQNHLKYSTQTQTRMFFMCLSTLQTLLTLSLSSTN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M+LF+I FEA+LIP +II WG ER+ A F YT S+ +L A+++M ++ Sbjct: 115 MILFFIMFEATLIPTMIIITRWGSQKERLTAGMYFMFYTLISSMPLLIALLMMNYQLDNL 174 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + L M+ + + MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 175 NT-TLTPMTTYKPNTT--MWLACTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAILL 231 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + P+ LA + P I ++L +I SL+ + Q D+K LIAYSS++HMG Sbjct: 232 KLGGYGMMR-ISPMLCLAKTLYYPFII-VALWGMIMTSLICLRQPDLKSLIAYSSVSHMG 289 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V S + GAM M++HG+ SS LF ++Y+R HTR + G+ +P Sbjct: 290 LVVTATMIQTPSSLSGAMILMVAHGITSSMLFCLANMMYERTHTRTLAMMQGIQTTLPLM 349 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ + NM +P T +GE + ++F S +L ++A+YS+ ++ + Sbjct: 350 TAFWLISNLTNMAIPPTINLMGEITITTTMFNWSPPTLILTGSAATITAIYSMHMFSAIQ 409 Query: 433 FGVSKCEKVQQLKDLSLRE 451 G K +K + RE Sbjct: 410 QG--KTQKDMMISPPQTRE 426 >gi|154090917|ref|YP_001403164.1| NADH dehydrogenase subunit 4 [Reinhardtius hippoglossoides] gi|153581806|emb|CAO79730.1| NADH dehydrogenase 4 [Reinhardtius hippoglossoides] gi|153581820|emb|CAO79743.1| NADH dehydrogenase 4 [Reinhardtius hippoglossoides] gi|153581834|emb|CAO79756.1| NADH dehydrogenase 4 [Reinhardtius hippoglossoides] Length = 460 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 130/358 (36%), Positives = 203/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K R Y+ L+ +I AF + ++ Sbjct: 57 MATDSLSTPLLVLTCWLLPLMILASQKHTASEPLGRQRMYITLLASLQFFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 VMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTSGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L+ ++ ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLHYTDPLTLSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P I F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMTMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQSPWGLTGALTLMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQVALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 355 LMATWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMF 412 >gi|89257242|ref|YP_514693.1| NADH dehydrogenase subunit 4 [Ranzania laevis] gi|86604656|dbj|BAE79239.1| NADH dehydrogenase subunit 4 [Ranzania laevis] Length = 460 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 205/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S +L D +S L+VLT +L P IL+S + R Y++ L+ +I AF Sbjct: 52 FLSPYLAADTLSTPLLVLTCWLLPLMILASQNHMAHEPVSRQRTYIMLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEVIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L +S ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLALPYSDPLSLTTYADKLW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL Q P I L+L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRMLVMLEPLTKQLSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILVQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QVALPLMTAWWFIASLANLALPPLPNLMGELMIITSMFNWSWWTLALTGTGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|114052828|ref|YP_740276.1| NADH dehydrogenase subunit 4 [Solea senegalensis] gi|113208358|dbj|BAF03549.1| NADH dehydrogenase subunit 4 [Solea senegalensis] Length = 460 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 204/357 (57%), Gaps = 14/357 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 + D IS L+VL+ +L P IL+S + + NF+ I+ L L+ +I AF + ++ Sbjct: 57 MATDSISTPLLVLSCWLLPLMILASQNHMAKDPSNFQRAYISLLTSLQFFLILAFGATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLSLQGWTGTMS 176 Query: 194 II-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ DL ++ P++ W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 LLTLPFSDLAPLT--PYTSMLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL Q P I L++ II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRIMIMLEPLTKQLCYPFII-LAMWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE +I S+F S +L G +++A YSL Sbjct: 353 LPLMAAWWFIASLANLALPPLPNLMGELTIITSLFNWSWWTLILTGAGTLITAGYSL 409 >gi|108793248|ref|YP_636993.1| NADH dehydrogenase subunit 4 [Lepisosteus spatula] gi|25006502|dbj|BAC23993.1| NADH dehydrogenase subunit 4 [Atractosteus spatula] Length = 460 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI---QENFREYMIAFLV-LESMVIGAFLSLD 133 +L +D +S L+VLT +L P I++S I N + I+ LV L++ +I AF + + Sbjct: 56 YLAIDPLSTPLLVLTCWLLPLMIMASQNHIFPEPINRQRMYISLLVSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP II WG +ER+ A F YT GS+ +L A++ + +K T Sbjct: 116 IILFYIMFEATLIPTLAIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTL--QKDTG 173 Query: 193 SIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLLIQYSQPALTPSWTNKIWWAACLLAFLVKMPLYGIHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L I + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRVVVLLDPLTKELAYPFII-LALWGAIMTGTTCLRQTDLKALIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG VT GI G GA+ M++HGLVSSALF +Y+R +TR + G+ Sbjct: 293 SHMGLVTGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTVYERTNTRTLLITRGMQTF 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P AV + ++AN+ LP GE ++ S+F S +L +++ +Y+++++ Sbjct: 353 LPLTAVWWFIASLANLALPPFPNLTGEMAIMASLFYWSEWTLILTGLAALITIIYTMYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 +G + ++ + RE ++ Sbjct: 413 MTTQWGPVP-PSMSNIEPPNSREHLLI 438 >gi|213136077|gb|ACJ43631.1| NADH dehydrogenase subunit 4 [Echinotriton chinhaiensis] Length = 459 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 215/392 (54%), Gaps = 13/392 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLL 136 VD +S L++LT +L P L+S ++ N R Y+I +L+ +I AF S ++++ Sbjct: 58 VDPLSSPLLILTCWLLPLMTLASQNHLKTNPPSRQRTYLIMLTLLQISLITAFSSTELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 118 FYIAFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLTLQTTMGSLSLT 177 Query: 196 DLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + M S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 178 LINMMDPMMTQNSSNKILWLACLLAFMVKMPLYGVHLWLPKAHVEAPVAGSMILAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG IR + L L + P + L+L ++ SL+ M QTD+K LIAYSS++HMG Sbjct: 238 LGGYGIIRITVVLAQLTKEMSYPFMI-LALWGVVMTSLICMRQTDLKSLIAYSSVSHMGL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + GA+ M+SHGL+SSALF + Y+R H+R + G +P A Sbjct: 297 VIAATMIQTPLSMTGAVILMISHGLISSALFCLANLNYERTHSRTLLLTRGAQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++NM LP + GE +I+S+F S ++ +++A Y+L+++ Sbjct: 357 TWWLLANLSNMALPPSMNLWGELTIILSLFNWSPWTILITGTATLITASYTLYMFLMTQR 416 Query: 434 GVSKCEKVQQLKDLSLRERCM----VYPIAVL 461 G + + L RE + ++P+A+L Sbjct: 417 GPTP-PHLNSLSPSHTREHLLMALHLFPMALL 447 >gi|148922582|ref|YP_001293654.1| NADH dehydrogenase subunit 4 [Alosa pseudoharengus] gi|148762516|dbj|BAF63967.1| NADH dehydrogenase subunit 4 [Alosa pseudoharengus] Length = 460 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 134/386 (34%), Positives = 209/386 (54%), Gaps = 11/386 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S Q R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSAPLLVLTCWLLPLMILASQNHTQSEPASRQRMYLSLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLQNSTGSL 175 Query: 193 SIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L ++ + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMITLNFCQPLTLISWGDKIW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRMTTVLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 294 HMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTSYERTHSRTMVLARGMQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 354 PLTATWWFIANLANLALPPLPNLMGEIMIITTMFNWSPWTLILTGLGTLITAGYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 414 MTQRGPVPAH-ITGLTPYHTREHLLI 438 >gi|58578659|ref|YP_203286.1| NADH dehydrogenase subunit 4 [Herpestes javanicus] gi|57014063|gb|AAW32552.1| NADH dehydrogenase subunit 4 [Herpestes javanicus] Length = 459 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 134/384 (34%), Positives = 212/384 (55%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P I +S + + + Y+ + L+ +I F S ++++F Sbjct: 59 DSLSAPLLALTTWLLPLMITASQSHLSKETLTRKKLYITMLITLQLFLIMTFTSTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + TS ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLYI---QNTSGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 M + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLIMQYWNKPMSTTWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +Q P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTLLNPLTNQMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++AN+ LP + +GE VIM+ F SNT +L ++++ALYSL++ Sbjct: 355 MAAWWLLASLANLALPPSINLVGELFVIMASFSWSNTTIILMGTNIIITALYSLYMLITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + +K RE ++ Sbjct: 415 QRG-KNTYHTKSIKPSFTRENALM 437 >gi|16357118|ref|NP_443485.1| NADH dehydrogenase subunit 4 [Ijimaia dofleini] gi|16266813|dbj|BAB70010.1| NADH dehydrogenase subunit 4 [Ijimaia dofleini] Length = 460 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 127/360 (35%), Positives = 203/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSS----WKSIQENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P +++S + R Y+ + L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMVMASQNHTYNEPVNRQRTYLSLLVSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLML--QNNLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMLTLTYSEPLTLASWGDKIWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR + L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRMMAVLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQTV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + ++AN+ LP +GE ++I S++ S +L G +++A YSL+++ Sbjct: 353 LPLMATWWFIASLANLALPPLPNLMGELMIITSLYNWSYWSIILTGMGTLITAAYSLYMF 412 >gi|148922764|ref|YP_001293758.1| NADH dehydrogenase subunit 4 [Ilisha africana] gi|148762628|dbj|BAF64071.1| NADH dehydrogenase subunit 4 [Ilisha africana] Length = 460 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 200/369 (54%), Gaps = 10/369 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 + ++ +D +S L++LT +L P IL+S Q R Y+ L+ +I AF Sbjct: 52 LSNNYMAIDALSAPLLILTCWLLPLMILASQNHTQTEPLPRQRMYITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 112 GATEIIMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLMGSLPLLIALLALQSS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + SII L F + + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGSLSIITLNFNQPFTLTSYGDKIW-WTGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMIRMTTILDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI + G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAGGILTQTPWGLTGAIILMIAHGLASSALFCLANTSYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P +AN+ LP +GE ++I ++F S +L G +++A YSL Sbjct: 350 QTLFPLTTTWWFAANLANLALPPLPNLMGEMMIITAMFNWSPWTLILTGLGTLITAGYSL 409 Query: 426 WLYRKVVFG 434 +++ G Sbjct: 410 YMFLTTQRG 418 >gi|5835229|ref|NP_008273.1|ND4_10703 NADH dehydrogenase subunit 4 [Protopterus dolloi] gi|1161213|gb|AAC38030.1| NADH dehydrogenase subunit 4 [Protopterus dolloi] Length = 461 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 220/391 (56%), Gaps = 12/391 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + ++ +D IS L+VL+ +L P IL+S + + R Y+I ++L++ ++ F Sbjct: 52 FINLYMTIDSISAPLLVLSCWLLPLMILASQNHMLHEPLQRQRVYLILLMILQTFLLLTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 ++ ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 MASELIMFYVMFEATLIPTLIIITRWGNQAERLQAGTYFLFYTLAGSLPLLIALLLINKN 171 Query: 189 KKTSSIIDL----YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 TSSI+ L S ++ W W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 MMTSSIVLLNFFSTDFSSNSYASTLW-WAASLFAFLVKMPLYGVHLWLPKAHVEAPIAGS 230 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PLA P I L+L II ++ + Q+D+K LIA Sbjct: 231 MVLAAILLKLGGYGMLRMIPILPPLAKPLIYPFII-LALWGIIMTGMICLRQSDLKSLIA 289 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G+ GA+ M++HGL SS LF Y+R H+R + G Sbjct: 290 YSSVSHMGLVISGILIQTPWGLTGAITLMIAHGLTSSLLFCLANTNYERTHSRTMLLARG 349 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + + ++ + N+ LP + +GE +IM+ F + +L G +++A YS Sbjct: 350 MQTILPLFGLWWLLANLTNLALPPSINLMGELPIIMATFNWAGLTILLTGIGTLITATYS 409 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++Y G + ++ RE ++ Sbjct: 410 LYMYMMTQHG-QISPQTTMMEPAHTREHLLI 439 >gi|291002197|gb|ADD71200.1| NADH dehydrogenase subunit 4 [Oreochromis niloticus] Length = 460 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + ++ D +S L+ LT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLALTCWLLPLMILASQNHTAPEPISRQRTYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNN 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L +M F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYTPSMQLSSFADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTSWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFHWSWWTIALTGGGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|157736085|ref|YP_001491444.1| NADH dehydrogenase subunit 4 [Coreoperca kawamebari] gi|157679298|dbj|BAF80359.1| NADH dehydrogenase subunit 4 [Coreoperca kawamebari] Length = 460 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 127/364 (34%), Positives = 210/364 (57%), Gaps = 16/364 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S ++ E R ++ ++L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTVHEPINRQRMFITLLVILQTCLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++LLFY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L +++++ + Sbjct: 114 TEILLFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVSLLLL---QN 170 Query: 191 TSSIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 ++ + L + P ++ + W W+ +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 STGTLSLLTLPYSPPLLLTTYADKMW-WMGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMMRMMVMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A + ++AN+ LP +GE ++I S+F S L G +++A YS Sbjct: 349 LQMALPLMATWWFIASLANLALPPLPNLMGELMIITSLFSWSWWTLALTGVGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|148922694|ref|YP_001293641.1| NADH dehydrogenase subunit 4 [Alosa alosa] gi|148762502|dbj|BAF63954.1| NADH dehydrogenase subunit 4 [Alosa alosa] Length = 460 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 134/386 (34%), Positives = 209/386 (54%), Gaps = 11/386 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S Q R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSAPLLVLTCWLLPLMILASQNHTQSEPASRQRMYLSLLASLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLQNSTGSL 175 Query: 193 SIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L ++ + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMITLNFCQPLTLISWGDKIW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRMTTVLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 294 HMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTSYERTHSRTMVLARGMQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 354 PLTATWWFIANLANLALPPLPNLMGEIMIITTMFNWSPWTLILTGLGTLITAGYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 414 MTQRGPVPAH-ITGLTPYHTREHLLI 438 >gi|290573234|gb|ADD46403.1| NADH dehydrogenase subunit 4 [Apostichopus japonicus] gi|290573249|gb|ADD46417.1| NADH dehydrogenase subunit 4 [Apostichopus japonicus] Length = 456 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 202/373 (54%), Gaps = 28/373 (7%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI----GAF 129 F S+ L VD +S L++L+ +L P C L+ ++ N FL L +I F Sbjct: 50 FLSHSLAVDSLSAPLIILSCWLAPLCFLAQ-NVVKGNSGSLQNGFLALTCSIIFFLLLTF 108 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 SL++L F+I FEA+LIP V+I WG + ER+ A F YT FGS+ +L +IV++ Sbjct: 109 SSLNILSFFICFEATLIPTLVLITRWGANVERLQAGTYFLFYTLFGSLPLLVSIVLISQT 168 Query: 189 KKT-----SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T S I+ L + F FSI W WI +F +K+P++ FH WLP AHV+AP AG Sbjct: 169 TSTLMIPISEIVSLQG-NTF-FSINIW-WIITIVAFLVKMPIYGFHLWLPKAHVEAPVAG 225 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII--YASLVSMV----QT 297 S+ LA I+LK+GGYG IR + YF V +++ +I + +L++ + QT Sbjct: 226 SMILAAILLKLGGYGIIRM--------NAYFPDVTTLSAILTVICCWGTLITSILCTRQT 277 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K LIAYSS+ HM V G + GA+ M++HGLVSSALF ++Y+R HTR Sbjct: 278 DLKALIAYSSVGHMSLVAAGTIVFSDWTISGAIMLMIAHGLVSSALFALANILYERTHTR 337 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +IF G ++ AN+GLP IGE +I + S +A + Sbjct: 338 NIFITRGFKMITVLLPFWWLISCAANLGLPPLPNLIGELYIITGIISWSIFLAPILGVAT 397 Query: 418 VLSALYSLWLYRK 430 V A+YSL +Y+ Sbjct: 398 VFGAIYSLLIYQN 410 >gi|288898398|gb|ADC66708.1| NADH dehydrogenase subunit 4 [Ursus arctos] gi|288898412|gb|ADC66721.1| NADH dehydrogenase subunit 4 [Ursus maritimus] gi|288898426|gb|ADC66734.1| NADH dehydrogenase subunit 4 [Ursus arctos] Length = 459 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 134/391 (34%), Positives = 206/391 (52%), Gaps = 31/391 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLVLLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLHT--QNNLGSLN 175 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 L +QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 176 FLL--------MQYWTQPLPNSWSSMFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL S + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLGPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSLLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T IGE V+++ F SN L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLSLPPTINLIGELFVVVATFSWSNITITLMGTNIIITALY 406 Query: 424 SLWLYRKVVFGVSKC-EKVQQLKDLSLRERC 453 S LY + KC V+ +K RE Sbjct: 407 S--LYMLITTQRGKCTNHVKSIKPSFTRENA 435 >gi|195182354|emb|CAQ68413.1| NADH dehydrogenase subunit 4 [Ursus thibetanus] Length = 459 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 131/381 (34%), Positives = 209/381 (54%), Gaps = 11/381 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQSHLSKETLTRKKLYITMLILLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ T + + Sbjct: 118 FYILFEATLMPTLVIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALLHTQNNLGTLNFL 177 Query: 196 DL-YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 178 MMQYWIQPLPNSWSSVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITTLLGPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAVLIQTPWSYMGATALMVAHGLTSSMLFCLANSNYERVHSRTMILARGLQTLLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP T IGE V+++ F SN L ++++ALYS LY + Sbjct: 357 AWWLLASLTNLALPPTINLIGELFVVVATFSWSNITITLMGANIIITALYS--LYMLITT 414 Query: 434 GVSKC-EKVQQLKDLSLRERC 453 KC + ++ +K RE Sbjct: 415 QRGKCTDHIKSIKPSFTRENA 435 >gi|62184336|ref|YP_220728.1| NADH dehydrogenase subunit 4 [Megaptera novaeangliae] gi|62086590|dbj|BAD91690.1| NADH dehydrogenase subunit 4 [Megaptera novaeangliae] gi|219560183|gb|ACL27310.1| NADH dehydrogenase subunit 4 [Megaptera novaeangliae] gi|289474181|gb|ADC97740.1| NADH dehydrogenase subunit 4 [Megaptera novaeangliae] Length = 459 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 128/356 (35%), Positives = 207/356 (58%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + R+ Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLIKEPPIRKKLYITMLITLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALLYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAQPLSTSWSNIFLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MSVF SN +L +V++ALY+L++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSVFSWSNPTIILMGTNIVITALYTLYM 410 >gi|289183017|ref|YP_003457014.1| NADH dehydrogenase subunit 4 [Neoceratias spinifer] gi|288908851|dbj|BAI77101.1| NADH dehydrogenase subunit 4 [Neoceratias spinifer] Length = 460 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 199/355 (56%), Gaps = 10/355 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P I++S + N R Y+I L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMIVASQNHMTHNPLNRQRTYIILLTSLQLFLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 AMFYIMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L + P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 177 LLTLQYSAASPLSSYGDKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAI 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L+ L PL + P I L+L ++ + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMLVVLEPLTEKLSYPFII-LALWGVLMTGSMCLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R HTR + G+ +P Sbjct: 295 MGLVVGGILVQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHTRTMILARGMQMLLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 V ++AN+ LP +GE +++ S+ S+ +L G +++A YSL Sbjct: 355 LMTSWWFVTSLANLALPPLPNLMGELMILTSLLNWSHWTIILTGAGTLITAAYSL 409 >gi|190349561|ref|YP_001974484.1| NADH dehydrogenase subunit 4 [Monotaxis grandoculis] gi|139000595|dbj|BAF51799.1| NADH dehydrogenase subunit 4 [Monotaxis grandoculis] Length = 460 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 205/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLS 131 S ++ D +S L+VLT ++ P IL+S + EN + + LV L+ +I AF + Sbjct: 54 SPYIATDNLSTPLLVLTCWILPLMILASQSHVAREPENRQRMFLTLLVSLQVFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++ LFY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 114 TEITLFYVMFEATLIPTLMLITRWGNQTERLSAGIYFLFYTLAGSLPLLVALLTLQNDTG 173 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L P ++ ++W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLILQYSDISPLNSYADKFW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R L L PL Q P I L+L ++ + + QTD+K LIAYSS Sbjct: 233 AAILLKLGGYGMMRMLTVLEPLTEQLSYPFII-LALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMTSWWFIASLANLALPPLPNLMGELMIITSLFNWSYWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|124377075|emb|CAM31978.1| NADH dehydrogenase 4 [Melanogrammus aeglefinus] Length = 460 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLTTLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIISYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIILDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|207560018|gb|ACI24610.1| NADH dehydrogenase subunit 4 [Rupicapra pyrenaica] Length = 459 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 199/363 (54%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ L+L + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLARKKLFISMLILLQLFLIMTFAATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALI---------HIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MMGSLNF-LVLQYWVQPMSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLLLNP-TTDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMVAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|195182430|emb|CAQ68478.1| NADH dehydrogenase subunit 4 [Tremarctos ornatus] Length = 459 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 130/382 (34%), Positives = 209/382 (54%), Gaps = 13/382 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P +++S + + + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLVLTTWLLPLMLMASQSHLSKETLTRKKLYITMLVLLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLHT--QNNLGSLN 175 Query: 196 DL---YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLMMQYWIQPLPSSWSSIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL + + A LSL +I S + + Q D+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQADLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + + GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRIMILARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 355 MAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNATIILMGTNIIITALYSLYMLITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERC 453 G + V+ +K RE Sbjct: 415 QRG-KYTDHVKNIKPSFTRENA 435 >gi|256427219|ref|YP_003126988.1| NADH dehydrogenase subunit 4 [Rhynchopelates oxyrhynchus] gi|256353371|dbj|BAH97879.1| NADH dehydrogenase subunit 4 [Rhynchopelates oxyrhynchus] Length = 460 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 129/358 (36%), Positives = 203/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHTSSEPINRQRMYISLLTSLQIFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLHNDTGTLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L + P + + W W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLVLQYSNPIPLTTYADKLW-WAACLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL Q P I F +L I+ + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMIMLEPLTKQLSYPFIIF-ALWGIVMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQIALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I+S+F S +L G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPLPNLMGELMIIVSLFNWSWWTLLLTGAGTLITASYSLYMF 412 >gi|242624421|ref|YP_003002335.1| NADH dehydrogenase subunit 4 [Branchiostegus argentatus] gi|193875969|gb|ACF24637.1| NADH dehydrogenase subunit 4 [Branchiostegus argentatus] Length = 460 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 209/364 (57%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 + + ++ D IS L++LTT+L P +L+S + N + I+ L L+ +I AF Sbjct: 52 YLNLYMATDTISAPLLILTTWLLPLMMLASQAHLHHEPLNRQRMYISLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEIIMFYIMFEATLIPTLFLITRWGNQTERLNAGAYFLFYTLAGSLPLLVALLLLQ-N 170 Query: 189 KKTSSIIDLYAMSKF----PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + + S+ +S ++W W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 TTGTLSLLTLQYSELTMSGSYSSKFW-WVALMLAFLVKMPLYGAHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG IR L+ L P+ Q P I L+L +I + QTD+K LIA Sbjct: 230 MILAAILLKLGGYGMIRVLMMLEPVTKQLCYPFII-LALWGVIVTGSTCLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI + G+ G++ M+SHGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVIAGILTQSPWGITGSLILMISHGLTSSALFCLANTNYERTHSRTMLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A+ + ++AN+ LP +GE ++I + F S +L G +++A YS Sbjct: 349 LQAALPLMAMWWFLASLANLALPPLPNLMGELMIITATFNWSWWTIILTGAGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|261866717|ref|YP_003264365.1| NADH dehydrogenase subunits 4 [Serrivomer sector] gi|260894428|dbj|BAI44478.1| NADH dehydrogenase subunits 4 [Serrivomer sector] Length = 460 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 133/390 (34%), Positives = 212/390 (54%), Gaps = 13/390 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFL 130 + +L D +S L++L+ +L P IL+S ++ R Y+ + L+ +I AF Sbjct: 53 TNTYLATDPLSTPLLILSCWLLPLMILASQNHMRPEPINRQRSYITLLISLQMFLIMAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYI FEA+LIP +II WG ER+ A F YT GS+ +L +++V+ +K Sbjct: 113 ATEIIMFYIMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVSLLVL--QK 170 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 DLGTLSMLTIQYTKPLILYSWGDKLWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAY Sbjct: 231 ILAAVLLKLGGYGMMRIIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFSLANTNYERTHSRTLLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QMILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSILLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + + L+ RE ++ Sbjct: 410 YMFLMTQRGPTP-NHIINLEPSHTREHLLI 438 >gi|288898454|gb|ADC66760.1| NADH dehydrogenase subunit 4 [Ursus arctos] Length = 459 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 133/383 (34%), Positives = 206/383 (53%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLVLLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI- 194 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLHT--QNNLGSLN 175 Query: 195 --IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLMQYWIQPLPNSWSSMFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTLLSPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + + GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIVAVLIQTPWSYMGATALMIAHGLTSSLLFCLANSNYERTHSRTMILARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T IGE V+++ F SN L ++++ALYS LY + Sbjct: 355 MAAWWLLASLTNLSLPPTINLIGELFVVVATFSWSNITITLMGTNIIITALYS--LYMLI 412 Query: 432 VFGVSKC-EKVQQLKDLSLRERC 453 KC V+ +K RE Sbjct: 413 TTQRGKCTNHVKSIKPSFTRENA 435 >gi|21622579|emb|CAD13417.2| NADH dehydrogenase subunit 4 [Tamandua tetradactyla] Length = 472 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 204/354 (57%), Gaps = 10/354 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P +L+S + + + Y+ ++L+ ++I F + ++LLF Sbjct: 59 DPLSTPLLALTMWLLPLMLLASQSHLSKETITRKKLYISMLIMLQMLLIMTFTATELLLF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + +++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLMGSLPLLVALTYIQNNTGSLNLLT 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ +Q+ ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK Sbjct: 179 MKYLTQL-LPMQWASNFLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + L PL ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMLRITVMLDPL-TEYMAYPFIMLSLWGMIMTSSILLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIMAIMIQTPLSFIGASVLMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTIIPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP + IGE V++ F SN +L VV++ALYSL++ Sbjct: 357 SWWLLASLTNLALPPSINLIGELFVMIPSFAWSNFTMLLMGLNVVITALYSLYM 410 >gi|14587465|gb|AAK70514.1|AF224615_4 NADH dehydrogenase subunit 4 [Cheirogaleus medius] Length = 459 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 138/399 (34%), Positives = 212/399 (53%), Gaps = 25/399 (6%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLMKETWTRKKLYLSMLIFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIY------TQNFLG 172 Query: 197 LYAMSKFPFSIQY----W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 M F Q W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 173 SLNMLTITFYNQELSNSWSNSFLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P+ ++ A + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITMILDPM-TKLLAYPLLMLCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM VT+ I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVTMAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQSF 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A ++ ++ N+ LP IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPFINLIGELLVIMASFSWSNITIILTGLNMLITALYSLYML 411 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G S L RE + + PIA+LT+ Sbjct: 412 TVTQRGKSTYH-THNLNPSFTRENTLMSMHMLPIALLTL 449 >gi|56692350|ref|YP_163942.1| NADH dehydrogenase subunit 4 [Anguilla marmorata] gi|56565424|dbj|BAD78097.1| NADH dehydrogenase subunits 4 [Anguilla marmorata] Length = 460 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 209/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMRLEPINRQRSYITLLISLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPLILSSWGDKLWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMITILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMTQRGPTPSHII-GLEPSHTREHLLI 438 >gi|157939563|ref|YP_001496987.1| NADH dehydrogenase subunit 4 [Bufo japonicus] gi|157908534|dbj|BAF81502.1| NADH dehydrogenase subunit 4 [Bufo japonicus] Length = 454 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 211/371 (56%), Gaps = 26/371 (7%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + + +DGIS L+VLT +LT +L+S + + R Y+ ++L+ + AF Sbjct: 50 FLNNYFTIDGISSPLLVLTCWLTAPTLLASQSKLSKEPISRQRTYIFTIIMLQVTTLLAF 109 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 L+ M+LF+I FEA++IP ++I WG ER+ A YT FGS+ +L A++ Sbjct: 110 LADSMILFFIMFEATMIPTLIVITRWGAQKERMLAGTYLIFYTLFGSMALLTALLYFHET 169 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM-------WIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 T SI +++K FS Y + W+A +F +K+P++ H WLP AHV+AP Sbjct: 170 FGTMSI----SLAK-SFSANYTLSTCSLTWWLACLIAFLVKMPLYGVHLWLPKAHVEAPI 224 Query: 242 AGSVFLAGIMLKMGGYGCIR---FLLPLF-PLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 AGS+ LAG +LK+GGYG +R F+ F PLA P++ F SL ++ ++++ QT Sbjct: 225 AGSMILAGTLLKLGGYGILRMNAFITDSFTPLAQ----PLVVF-SLFGVLLSAILCSRQT 279 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K LIA+SS++HMG V + + G+M M+SHGLVSSALF Y+R ++R Sbjct: 280 DLKSLIAFSSVSHMGLVIAASMIKTEWSIIGSMVLMISHGLVSSALFCLANTSYERTNSR 339 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 + G P A ++ T+ N+ LP + FIGE ++ S+FQ SN +L GV Sbjct: 340 TLILLQGTQIIFPLAAAWWLLATLMNLALPPSPNFIGEMSILTSLFQWSNMTLILTGLGV 399 Query: 418 VLSALYSLWLY 428 V + YSL+++ Sbjct: 400 VFTTAYSLYMF 410 >gi|156937338|ref|YP_001435134.1| proton-translocating NADH-quinone oxidoreductase, chain M [Ignicoccus hospitalis KIN4/I] gi|156566322|gb|ABU81727.1| proton-translocating NADH-quinone oxidoreductase, chain M [Ignicoccus hospitalis KIN4/I] Length = 496 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 136/341 (39%), Positives = 189/341 (55%), Gaps = 31/341 (9%) Query: 81 VDGISILLVVLTTFL-TPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 VD +S L + +T + +SW+ I+E R Y+ L E+ +IG F + ++ FY+ Sbjct: 74 VDALSSLFLAITALIFIAVAWAASWE-IEERPRLYLALMLASEAALIGVFATWNLFWFYL 132 Query: 140 FFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA 199 F+E +L+PMF+ I WGG ++YAAYKFF+YT G + +L AI + W LY Sbjct: 133 FWEFTLLPMFIHILYWGGERKVYAAYKFFVYTQVGGLMLLVAIA-LGW---------LYG 182 Query: 200 MSKFPFS--------IQYWMWIAF----FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + F F+ W+ +AF SF IK+P+ PFHTWLP AHV+AP+ SV L Sbjct: 183 ANTFDFTEFAASLAVAPDWVKVAFAWLTLLSFFIKMPVPPFHTWLPAAHVEAPSPSSVIL 242 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A +MLKMGGY IR L + P P I + +A +YAS V++ Q D K+++AY+S Sbjct: 243 ASLMLKMGGYAFIRITLGMAPYVLMGALPFIAVWAALAAVYASTVAIAQEDFKRVVAYTS 302 Query: 308 IAHMGYVTIGIFS---GMKS----GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 I HM TIG G+K G G++F+M+SH V ALF GVI HTR I Sbjct: 303 ITHMSMSTIGAAVWALGLKEASLLGFIGSVFEMISHSFVVGALFLLSGVIKHYCHTRKIP 362 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 A GL P + V+MV A GLPGTSG+ E ++ S Sbjct: 363 AIRGLAFVAPILSTVIMVAIFAGFGLPGTSGYPAELSLVAS 403 >gi|14588643|dbj|BAB61833.1| NADH dehydrogenase subunit 4 [Trachurus japonicus] Length = 460 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDALSTPLLVLTCWLLPLMILASQNHTSSEPINRQRMYITLLTSLQFFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGSL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L+ + P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLHYSNPIPLSTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLMATWWFISCLANLALPPLPNLMGELMIITSLFNWSWWTLALTGTGTLITAGYSLYMF 412 >gi|327492985|ref|YP_004347936.1| NADH dehydrogenase subunit 4 [Colomesus asellus] gi|327392234|dbj|BAK09687.1| NADH dehydrogenase subunit 4 [Colomesus asellus] Length = 460 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 203/372 (54%), Gaps = 16/372 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ ++ AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTAHEPVSRQRMYISLLTSLQFFLVLAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +M++FYI FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 TSTEMMMFYIMFEATLIPTLFLITRWGNQAERLSAGNYFLFYTLAGSLPLLVALLLL--- 168 Query: 189 KKTSSIIDLYAMSKFPFSI------QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++ + L + P S + W W+ +F +K+P++ H WLP AHV+AP A Sbjct: 169 QNSNGTLSLLILPYTPLSQLNTYADKIW-WVGCILAFLVKMPLYGVHLWLPKAHVEAPIA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R L+ L PL + P I L+L II + M QTD+K L Sbjct: 228 GSMVLAAVLLKLGGYGMMRILVTLEPLTKELSYPFIV-LALWGIIMTGSICMRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 287 IAYSSVGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLA 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G+ +P + T+AN+ LP +GE ++I S+F S +L G +++A Sbjct: 347 RGMQMALPLMTAWWFIATLANLALPPLPNLMGELMIITSLFNWSWWTIILTGLGTLITAG 406 Query: 423 YSLWLYRKVVFG 434 YSL+++ G Sbjct: 407 YSLYMFLTTQRG 418 >gi|66802167|gb|AAY56618.1| NADH dehydrogenase subunit 4 [Merlangius merlangus] Length = 461 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLTTLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|317134215|ref|YP_004123662.1| NADH dehydrogenase subunit 4 [Pungitius sinensis] gi|166066421|gb|ABY80689.1| NADH dehydrogenase subunit 4 [Pungitius sinensis] Length = 460 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 202/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLS 131 +Y+L D +S L+VLT +L P I++S + E + R Y+ L+ +I AF + Sbjct: 54 NYYLATDSLSTPLLVLTCWLLPLMIIASQNHTANEPYNRQRAYITLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLLLQNNAG 173 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + F F+ + W W + +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTIQYSDPFQLATFADKLW-WASCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR + L PL P I F +L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRMIAMLDPLTKDLGYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V I + GA+ M++HGL SSALF Y+R H R + GL Sbjct: 292 VSHMGLVVAAILIQTPWSLSGALILMIAHGLASSALFCLANTNYERTHNRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+GLP +GE L+I S+F S L G +++ YSL++ Sbjct: 352 ALPLMTTWWFIASLANLGLPPLPNLMGELLIITSLFNWSWWTLALTGAGTLITVSYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|213136427|gb|ACJ43956.1| NADH dehydrogenase subunit 4 [Tylototriton asperrimus] Length = 458 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 206/367 (56%), Gaps = 13/367 (3%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVI 126 + + H+ VD IS L++LT +L P L+S ++ N R Y+I +L+ +I Sbjct: 48 LPTMTNLHMTVDPISSPLLILTCWLLPLMTLASQNHLKTNPMSRQRTYLIMLTLLQMSLI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AF S ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + Sbjct: 108 TAFSSTELIMFYIAFEATLIPTLVIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLTL 167 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQ----YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + S+ + M P Q +W+A +F +K+P++ H WLP AHV+AP Sbjct: 168 QTTMGSLSLTLINMME--PMMTQNNSNKILWLACLLAFMVKMPLYGTHLWLPKAHVEAPI 225 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA + K+GGYG IR L PL + P + L+L ++ L+ M QTD+K Sbjct: 226 AGSMILAAVS-KLGGYGIIRITTILTPLTKEMSYPFMI-LALWGVVMTGLICMRQTDLKS 283 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG V I G+ GA+ M+SHGL+SSALF + Y+R H+R + Sbjct: 284 LIAYSSVSHMGLVIAAIMIQTPWGMTGAIILMISHGLISSALFCLANLNYERTHSRTLLL 343 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 G +P A ++ ++NM LP + GE +++S+F S ++ G +++A Sbjct: 344 ARGTQTILPLTATWWLLTNLSNMALPPSMNLWGELTIMVSLFNWSPWTILITGTGTLITA 403 Query: 422 LYSLWLY 428 Y+L+++ Sbjct: 404 SYTLYMF 410 >gi|94481732|gb|ABF21442.1| NADH dehydrogenase subunit 4 [Melanogrammus aeglefinus] Length = 455 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 50 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLTTLQLFLILAFGATE 109 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 110 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 169 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 170 SLLIISYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 228 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 229 VLLKLGGYGMMRLMIILDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 287 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 288 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 347 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 348 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSAWTLILTGIGTLITAAYSLYMF 406 >gi|25057839|ref|NP_740071.1| NADH dehydrogenase subunit 4 [Caranx melampygus] gi|25006078|dbj|BAC23692.1| NADH dehydrogenase subunit 4 [Caranx melampygus] Length = 460 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDALSTPLLVLTCWLLPLMILASQNHTSSEPINRQRMYITLLTSLQFFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 VIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGSL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSNPIPLSTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMF 412 >gi|228015370|ref|YP_002836161.1| NADH dehydrogenase subunit 4 [Apostichopus japonicus] gi|227437205|gb|ACP30406.1| NADH dehydrogenase subunit 4 [Apostichopus japonicus] gi|261399806|dbj|BAI45122.1| NADH dehydrogenase subunit 4 [Apostichopus japonicus] gi|261490164|dbj|BAI45189.1| NADH dehydrogenase subunit 4 [Apostichopus japonicus] Length = 456 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 202/373 (54%), Gaps = 28/373 (7%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI----GAF 129 F S+ L VD +S L++L+ +L P C L+ ++ N FL L +I F Sbjct: 50 FLSHSLAVDSLSAPLIILSCWLAPLCFLAQ-NVVKGNSGSLQNGFLALTCSIIFFLLLTF 108 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 SL++L F+I FEA+LIP V+I WG + ER+ A F YT FGS+ +L +IV++ Sbjct: 109 SSLNILSFFICFEATLIPTLVLITRWGANVERLQAGTYFLFYTLFGSLPLLVSIVLISQT 168 Query: 189 KKT-----SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T S I+ L + F FSI W WI +F +K+P++ FH WLP AHV+AP AG Sbjct: 169 TSTLMIPISEIVSLQG-NTF-FSINIW-WIITIVAFLVKMPIYGFHLWLPKAHVEAPVAG 225 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII--YASLVSMV----QT 297 S+ LA I+LK+GGYG IR + YF V +++ +I + +L++ + QT Sbjct: 226 SMILAAILLKLGGYGIIRM--------NAYFPDVTTLSAILTVICCWGALITSILCTRQT 277 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K LIAYSS+ HM V G + GA+ M++HGLVSSALF ++Y+R HTR Sbjct: 278 DLKALIAYSSVGHMSLVAAGTIVFSDWTISGAIMLMIAHGLVSSALFALANILYERTHTR 337 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +IF G ++ AN+GLP IGE +I + S +A + Sbjct: 338 NIFITRGFKMITVLLPFWWLISCAANLGLPPLPNLIGELYIITGIISWSIFLAPILGVAT 397 Query: 418 VLSALYSLWLYRK 430 V A+YSL +Y+ Sbjct: 398 VFGAIYSLLIYQN 410 >gi|317097499|ref|YP_004123713.1| NADH dehydrogenase subunit 4 [Pungitius kaibarae] gi|166066435|gb|ABY80702.1| NADH dehydrogenase subunit 4 [Pungitius kaibarae] Length = 460 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 202/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLS 131 +Y+L D +S L+VLT +L P I++S + E + R Y+ L+ +I AF + Sbjct: 54 NYYLATDSLSTPLLVLTCWLLPLMIIASQNHTANEPYNRQRTYITLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLLLQNNAG 173 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + F F+ + W W + +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTIQYSDPFQLATFADKLW-WASCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR + L PL P I F +L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRMIAMLDPLTKDLGYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V I + GA+ M++HGL SSALF Y+R H R + GL Sbjct: 292 VSHMGLVVAAILIQTPWSLSGALVLMIAHGLASSALFCLANTNYERTHNRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+GLP +GE L+I S+F S L G +++ YSL++ Sbjct: 352 ALPLMTTWWFIASLANLGLPPLPNLMGELLIITSLFNWSWWTLALTGAGTLITVSYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|221145557|ref|YP_002519829.1| NADH dehydrogenase subunit 4 [Xanthichthys auromarginatus] gi|219806917|dbj|BAH10287.1| NADH dehydrogenase subunit 4 [Xanthichthys auromarginatus] Length = 460 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 203/363 (55%), Gaps = 14/363 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L DG+S L+VLT +L P IL+S + + R Y+ L+ +I AF + Sbjct: 54 NLYLATDGLSTPLLVLTCWLLPLMILASQNHLAQEPHSRQRMYISLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVLMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL---QN 170 Query: 191 TSSIIDLYAMSKF-PFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T+ + L A+ P W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 TTGTLSLLALQHAAPAHADTWASKFWWAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMLTVLDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 290 SSVSHMGLVVGGILIQSPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGF 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A+ + ++AN+ LP +GE +VI S+F S L G +++A YSL Sbjct: 350 QMALPLMAMWWFLASLANLALPPLPNLMGELMVITSLFNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|157736267|ref|YP_001491301.1| NADH dehydrogenase subunit 4 [Parapristipoma trilineatum] gi|139000633|dbj|BAF51825.1| NADH dehydrogenase subunit 4 [Parapristipoma trilineatum] Length = 460 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYISLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEIIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L + P + + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYSNPVPLTTYADKLW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMLVMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|215979577|ref|YP_002333085.1| NADH dehydrogenase subunit 4 [Chelonodon patoca] gi|215422765|dbj|BAG85596.1| NADH dehydrogenase subunit 4 [Chelonodon patoca] Length = 460 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 128/364 (35%), Positives = 202/364 (55%), Gaps = 10/364 (2%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGA 128 +F + ++ D +S L+VL+ +L P IL+S + R Y+ L+ +I A Sbjct: 51 HFLNPYMATDPLSTPLLVLSCWLLPLMILASQNHMTPEPLNRQRMYISLLASLQLFLIMA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 111 FAATEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLLQN 170 Query: 188 EKKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + S++ L + S + W W +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 TNGSLSLLTLPHSTPLQLSTYAGKIW-WTGCILAFLVKMPLYGVHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L+ L PL + P I L+L II + M QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMMRILVSLEPLTKELSYPFII-LALWGIIMTGTICMRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVIGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++AN+ LP +GE +++ S+ S L G +++A YS Sbjct: 349 LQTALPLMTTWWFIASLANLALPPLPNLMGELMILTSLLNWSWWTIALTGLGTLITASYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|256532607|gb|ACU81526.1| NADH dehydrogenase subunit 4 [Bos grunniens] Length = 459 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 201/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPMHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+ S F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMTSTFSWSNITIILMGMNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|254055041|ref|YP_003058387.1| NADH dehydrogenase subunit 4 [Oryzias javanicus] gi|253960445|dbj|BAH84928.1| NADH dehydrogenase subunit 4 [Oryzias javanicus] Length = 460 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 133/358 (37%), Positives = 199/358 (55%), Gaps = 10/358 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S + D +S L+VLT +L P IL+S ++ R Y+ + L+ +I AF + Sbjct: 54 STFMATDPLSTPLLVLTCWLLPLMILASQNHMKHEPTNRQRTYISLLISLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEMIMFYVMFEATLIPTLVIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSAG 173 Query: 191 TSSIIDLYAMSKFPFSIQ---YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S + S Q W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSFLTTQFFQPLEMSSQASKLW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL SQ P I L+L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRVIIVLDPLTSQLSYPFIV-LALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGFTGALVLMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + T+AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 352 VLPLMASWWFISTLANLALPPLPNLMGELMIITSLFNWSFWTLILTGAGTLITASYSL 409 >gi|124055200|gb|ABM89808.1| NADH dehydrogenase subunit 4 [Chamaeleo chamaeleon] gi|124055228|gb|ABM89834.1| NADH dehydrogenase subunit 4 [Chamaeleo chamaeleon] Length = 450 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 207/379 (54%), Gaps = 12/379 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIGAFLSLD 133 +L VD IS L+ L+ +L P IL+S S Q R + + L++++ + S + Sbjct: 55 YLSVDQISAPLLTLSYWLLPIAILASQNHLKYSTQTQTRMFFMCLSTLQTLLTLSLSSTN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M+LF+I FEA+LIP +II WG ER+ A F YT S+ +L A+++M ++ Sbjct: 115 MILFFIMFEATLIPTMIIITRWGSQKERLTAGMYFMFYTLISSMPLLIALLMMNYQLDNL 174 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + L M+ + + MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 175 NT-TLTPMTTYKPNTT--MWLACTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAILL 231 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + P+ LA + P I ++L +I SL+ + Q D+K LIAYSS++HMG Sbjct: 232 KLGGYGMMR-ISPMLCLAKTLYYPFII-VALWGMIMTSLICLRQPDLKSLIAYSSVSHMG 289 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V S + GAM M++HG+ SS LF ++Y+R HTR + G+ +P Sbjct: 290 LVVTATMIQTPSSLSGAMILMVAHGITSSMLFCLANMMYERTHTRTLAMMQGIQTTLPLM 349 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ + NM +P T +GE + ++F S +L ++A+YS+ ++ + Sbjct: 350 TAFWLISNLTNMAIPPTINLMGEITITTTMFNWSPPTLILTGSAATITAIYSMHMFSAIQ 409 Query: 433 FGVSKCEKVQQLKDLSLRE 451 G K +K + RE Sbjct: 410 QG--KTQKDMMISPPQTRE 426 >gi|148922554|ref|YP_001293862.1| NADH dehydrogenase subunit 4 [Sardina pilchardus] gi|148762740|dbj|BAF64175.1| NADH dehydrogenase subunit 4 [Sardina pilchardus] Length = 460 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 134/361 (37%), Positives = 201/361 (55%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S +Q R Y+ L+ +I AF + + Sbjct: 56 YMAIDPLSAPLLVLTCWLLPLMILASQNHMQIEPAPRQRTYLSLLASLQVFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLTAGTYFLFYTLAGSLPLLVALLSLQASTGSL 175 Query: 193 SII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+I L A+ + I W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 176 SMITLNFCQLTALGSWGDKIW---WAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRMTAVLDPLTKEMAYPFIV-LALWGIIMTGAICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTSYERTHSRTMVLARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A + +AN+ LP +GE ++I SVF S VL G +++A YSL++ Sbjct: 352 LFPLTATWWFIANLANLALPPLPNLMGEVMIITSVFNWSPWTLVLTGLGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|62184546|ref|YP_220780.1| NADH dehydrogenase subunit 4 [Eubalaena japonica] gi|39981062|gb|AAR33060.1| NADH dehydrogenase subunit 4 [Eubalaena glacialis] gi|62086688|dbj|BAD91781.1| NADH dehydrogenase subunit 4 [Eubalaena japonica] Length = 459 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 205/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + R+ Y+ ++L+ ++I F + +++LF Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLLKEPPVRKKLYITMLIMLQVLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALIYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAQPLSTSWSNIFLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITPMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V+MS F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVVMSAFSWSNPTILLMGTNIVITALYSLYM 410 >gi|166240013|ref|YP_313651.2| NADH dehydrogenase subunit 4 [Merlangius merlangus] Length = 460 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLTTLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|260766685|gb|ACX50388.1| NADH dehydrogenase subunit 4 [Thoburnia hamiltoni] Length = 460 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHTNSEPINRQRLYISLLASLQAFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 LIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++Q W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYSEPLTLQSWGHKLWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I ++L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLEPLSKELSYPFII-MALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILTQTPWGFTGAIILMIAHGLVSSTLFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTITLTGTGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 413 LMSQRGPTP-NHISGLPPFHTREHLLM 438 >gi|21717325|ref|NP_659385.3| NADH dehydrogenase subunit 4 [Tamandua tetradactyla] Length = 459 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 204/354 (57%), Gaps = 10/354 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P +L+S + + + Y+ ++L+ ++I F + ++LLF Sbjct: 59 DPLSTPLLALTMWLLPLMLLASQSHLSKETITRKKLYISMLIMLQMLLIMTFTATELLLF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + +++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLMGSLPLLVALTYIQNNTGSLNLLT 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ +Q+ ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK Sbjct: 179 MKYLTQL-LPMQWASNFLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + L PL ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMLRITVMLDPL-TEYMAYPFIMLSLWGMIMTSSILLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIMAIMIQTPLSFIGASVLMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTIIPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP + IGE V++ F SN +L VV++ALYSL++ Sbjct: 357 SWWLLASLTNLALPPSINLIGELFVMIPSFAWSNFTMLLMGLNVVITALYSLYM 410 >gi|94481746|gb|ABF21455.1| NADH dehydrogenase subunit 4 [Merlangius merlangus] Length = 461 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLTTLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIPYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIVLDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSAWTLILTGVGTLITAAYSLYMF 412 >gi|25057757|ref|NP_739980.1| NADH dehydrogenase subunit 4 [Neocyttus rhomboidalis] gi|25005953|dbj|BAC23576.1| NADH dehydrogenase subunit 4 [Neocyttus rhomboidalis] Length = 460 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 134/360 (37%), Positives = 204/360 (56%), Gaps = 14/360 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI-QENFREYMIAFLVLESM---VIGAFLSLDM 134 +G D +S L++LT +L P IL+S + QE + +L S+ +I AF + ++ Sbjct: 57 MGTDPLSTPLLILTCWLLPLMILASQHHMAQEPLNRQRVYITLLSSLQFFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A++++ T S Sbjct: 117 LMFYVMFEATLIPTLIIITRWGNQKERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLS 176 Query: 194 II-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ DL M+ + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 MLTTQYNDLNLMTSWGHKL--W-WAGCMIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRIMVTLNPLSKEMIFPFII-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 MP A ++AN+ LP +GE ++I S+F S L G +++A YSL+L+ Sbjct: 353 MPLMATWWFTASLANLALPPLPNLMGEIMIISSLFNWSWFTIALTGTGTLITAGYSLYLF 412 >gi|242624393|ref|YP_003002309.1| NADH dehydrogenase subunit 4 [Branchiostegus albus] gi|193875955|gb|ACF24624.1| NADH dehydrogenase subunit 4 [Branchiostegus albus] Length = 460 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 206/360 (57%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI-QENFREYMIAFLVLESM---VIGAFLSLD 133 ++ D IS L++LTT+L P IL+S + QE + +L S+ +I AF + + Sbjct: 56 YMATDTISTPLLILTTWLLPLMILASQAHLCQEPLNRQRVYISLLASLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 IIMFYIMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLXLQ-NTTGT 174 Query: 193 SIIDLYAMSKF----PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + S+ +S ++W W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSLLTLQYSELTMSNSYSSKFW-WVALMLAFLVKMPLYGAHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L+ L P+A Q P I L+L +I + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRVLMMLEPVAKQLCYPFII-LALWGVIMTGSTCLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI + G+ G++ M+SHGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVIAGILTLSPWGITGSLILMISHGLTSSALFCLANTNYERTHSRTMLLARGLQTA 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A+ + ++AN+ LP +GE ++I + S +L G +++A YSL+++ Sbjct: 353 LPLMAMWWFLASLANLALPPLPNLMGELMIITAALNWSWWTIILTGAGTLITAGYSLYMF 412 >gi|207559878|gb|ACI24480.1| NADH dehydrogenase subunit 4 [Capra pyrenaica] Length = 459 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 203/362 (56%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESPTRKKLFISMLVLLQLFLIMTFSATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIHI--QNTVGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWAQPVPNSWSNVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITLLLNPI-TDYMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVMSAFSWSNITIILMGLNMVITALYSLYMLITTQ 415 Query: 433 FG 434 +G Sbjct: 416 WG 417 >gi|66864732|gb|AAY57442.1| NADH dehydrogenase subunit 4 [Melanogrammus aeglefinus] Length = 460 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLTTLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIISYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIILDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|28894762|ref|NP_795842.1| NADH dehydrogenase subunit 4 [Salangichthys microdon] gi|28804964|dbj|BAC58247.1| NADH dehydrogenase subunit 4 [Salangichthys microdon] Length = 460 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 202/362 (55%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S I R Y+ L+ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLSCWLLPLMILASQNHISPEPVNRQRTYIALLASLQMFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ E Sbjct: 114 TEIIMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNETG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSLLTL--QYSQPLHLSTWGDKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R +L L PL+ + P I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMLMLDPLSKELAYPFIV-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTAYERTHSRTMLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + +AN+ LP +GE ++I ++F S ++ G +++A YSL+ Sbjct: 351 MVLPLMTTWWFIANLANLALPPLPNLMGELMIITAMFNWSYWTLLITGLGTLITASYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|280978415|ref|YP_003345342.1| NADH dehydrogenase subunit 4 [Serrivomer beanii] gi|271280555|dbj|BAI53363.1| NADH dehydrogenase subunit 4 [Serrivomer beanii] Length = 460 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/390 (34%), Positives = 212/390 (54%), Gaps = 13/390 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFL 130 + +L D +S L++L+ +L P IL+S ++ R Y+ + L+ +I AF Sbjct: 53 TNTYLATDPLSTPLLILSCWLLPLMILASQNHMRPEPLSRQRSYITLLVSLQMFLIMAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYI FEA+LIP +II WG ER+ A F YT GS+ +L +++V+ +K Sbjct: 113 ATEIIMFYIMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVSLLVL--QK 170 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 DLGTLSMLTIQYTKPLILYSWGDKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAY Sbjct: 231 ILAAVLLKLGGYGMMRIIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFSLANTNYERTHSRTLLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QMILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSILLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + V L+ RE ++ Sbjct: 410 YMFLMTQRGPTP-NHVINLEPSHTREHLLI 438 >gi|16357286|ref|NP_443381.1| NADH dehydrogenase subunit 4 [Scopelogadus mizolepis] gi|16267086|dbj|BAB70231.1| NADH dehydrogenase subunit 4 [Scopelogadus mizolepis] Length = 460 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 200/358 (55%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + Q R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHMTPEPQNRQRMYISLLTSLQMFLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTLS 176 Query: 194 IIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQYTKPLQLSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL + P I F +L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMTMLDPLTKELSYPFIIF-ALWGIIMTGAICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMILARGLQMVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPLPNLMGELVIITSLFNWSWWTLLLTGAGTLITASYSLYMF 412 >gi|202071079|gb|ACH95424.1| NADH dehydrogenase sunbunit 4 [Equus caballus] Length = 459 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/391 (33%), Positives = 207/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ +L++ +I F + +++ F Sbjct: 59 DPLSAPLLVLTTWLLPLMLMASQHHLSKEPLIRKKLYITMLTMLQTFLIMTFTATELISF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ SI + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALI---------SIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L F IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 LTGSLNF-LLIQYWNQALPDSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L P S + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTMLNPQTS-FMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V +G+ G M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVGVLIQTPWSDMGVTALMIAHGLTSSVLFCLANSSYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L ++ R A ++ ++ ++ LP + IGE LV+MS F SN ++ + ++ALYS Sbjct: 348 LQTHLLRMAAWWLLASLTSVALPPSINMIGELLVVMSSFSWSNITIIVMGANITITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINSIKPSFTRENALM 437 >gi|332886772|dbj|BAK22896.1| NADH dehydrogenase subunit 4 [Salmostoma bacaila] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 135/402 (33%), Positives = 220/402 (54%), Gaps = 18/402 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFL 130 + +L D +S L++LT +L P IL+S + R Y+ L+ ++ AF Sbjct: 53 ANAYLATDPLSTPLMILTCWLLPLMILASQNHVNPEPINRQRLYITLLTSLQVFLLMAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + +++LFYI FEA+LIP II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 113 ATEVILFYIMFEATLIPTLFIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL---Q 169 Query: 190 KTSSIIDLYAMSKFPFSI------QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +++ + + + + ++ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 QSTGTLSMLVLPQTQLTLLDSWGSKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG IR + L PL+ Q P + L+L II L+ + QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMIRIMTMLDPLSKQLIYPFMA-LALWGIIMTGLMCLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+ HMG V GI GV GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVGHMGLVAGGIMIQTNWGVSGAIILMIAHGLASSALFCLANTSYERTHSRTMLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ P V + ++AN+ +P +GE ++I ++ + S L G +++A+Y Sbjct: 348 GMQMIFPLTTVWWFLASLANLAMPPLPNLMGEIMIISALVKWSPWTVALTGSGTLITAVY 407 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCM-VYPIAVLTVF 464 SL++++ G + V L+ RE + V +A +TV Sbjct: 408 SLYMFQTTQRG-TMPHHVINLQPFHTREHLLAVLHLAPMTVL 448 >gi|62184420|ref|YP_220767.1| NADH dehydrogenase subunit 4 [Eubalaena australis] gi|62086674|dbj|BAD91768.1| NADH dehydrogenase subunit 4 [Eubalaena australis] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 205/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + R+ Y+ ++L+ ++I F + +++LF Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLLKEPPVRKKLYITMLIMLQVLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALIYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAQPLSTSWSNIFLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V+MS F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVVMSAFSWSNPTILLMGTNIVITALYSLYM 410 >gi|270267318|ref|YP_003331025.1| NADH dehydrogenase subunit 4 [Herwigia kreffti] gi|269994260|dbj|BAI50256.1| NADH dehydrogenase subunit 4 [Herwigia kreffti] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 204/372 (54%), Gaps = 10/372 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLAADPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRMYLSLLTFLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMMLTRGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P V +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 354 PLTTVWWFTANLANLALPPLPNLMGEIMIITTMFNWSPWTLALTGLGTLITAGYSLYLFL 413 Query: 430 KVVFGVSKCEKV 441 G + + Sbjct: 414 MCQRGPAPAHMI 425 >gi|212725490|ref|YP_002317242.1| NADH dehydrogenase subunit 4 [Pungitius pungitius] gi|212374561|dbj|BAG83127.1| NADH dehydrogenase subunit 4 [Pungitius pungitius] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 202/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLS 131 +Y+L D +S L+VLT +L P I++S + E + R Y+ L+ +I AF + Sbjct: 54 NYYLATDSLSTPLLVLTCWLLPLMIIASQNHTANEPYSRQRAYITLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLLLQNNAG 173 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + F F+ + W W + +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTIQYSDPFQLATFADKLW-WASCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR + L PL P I F +L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRMIAMLDPLTKDLGYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V I + GA+ M++HGL SSALF Y+R H R + GL Sbjct: 292 VSHMGLVVAAILIQTPWSLSGALILMIAHGLASSALFCLANTNYERTHNRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+GLP +GE L+I S+F S L G +++ YSL++ Sbjct: 352 ALPLMTTWWFIASLANLGLPPLPNLMGELLIITSLFNWSWWTLALTGAGTLITVSYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|166240010|ref|YP_313664.2| NADH dehydrogenase subunit 4 [Melanogrammus aeglefinus] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 206/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++G D +S L+VL+ +L P +L+S + R Y+ L+ +I AF + + Sbjct: 56 YIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLTTLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTL 175 Query: 193 SIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + YA PF + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIISYAKPLLLMPFGSKIW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRLMIILDPLSKEMVYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSAWTLILTGIGTLITAAYSLYMF 412 >gi|115531636|ref|YP_783982.1| NADH dehydrogenase subunit 4 [Galaxiella nigrostriata] gi|115501489|dbj|BAF34224.1| NADH dehydrogenase subunit 4 [Galaxiella nigrostriata] Length = 485 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/360 (35%), Positives = 201/360 (55%), Gaps = 8/360 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + +L VD +S L+ L+ +L P IL+S N + +I+ LV L+ +I AF + Sbjct: 54 NLYLAVDPLSAPLLTLSCWLLPLMILASQNHTSSEPVNRQRTLISLLVSLQVFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 114 TELIMFYVMFEATLLPTLIVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLALQKDTG 173 Query: 191 TSSIIDLYAMSKFPF--SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 T S+I + + S W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMITMQYIQPLNLISSTDKLWWTACLLAFLVKMPLYGMHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R +L L PL + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRIMLMLEPLNKELVYPFIV-LALWGVIMTGSICLRQTDLKALIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 293 SHMGLVAAGILIQTPWGFTGAIILMIAHGLTSSALFCLANTSYERTHSRTMLLARGMQII 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P V +AN+ LP +GE ++I ++F SN + G ++A YS +L+ Sbjct: 353 LPLMTTWWFVANLANLALPPLPNLMGELIIITTLFNWSNWTLLTTGVGTFITAAYSFYLF 412 >gi|219524017|gb|ABX59370.1| NADH dehydrogenase subunit 4 [Apostichopus japonicus] gi|261399820|dbj|BAI45135.1| NADH dehydrogenase subunit 4 [Apostichopus japonicus] Length = 456 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 202/373 (54%), Gaps = 28/373 (7%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI----GAF 129 F S+ L VD +S L++L+ +L P C L+ ++ N FL L +I F Sbjct: 50 FLSHSLAVDSLSAPLIILSCWLAPLCFLAQ-NVVKGNSGSLQNGFLALTCSIIFFLLLTF 108 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 SL++L F+I FEA+LIP V+I WG + ER+ A F YT FGS+ +L +IV++ Sbjct: 109 SSLNILSFFICFEATLIPTLVLITRWGANVERLQAGTYFLFYTLFGSLPLLVSIVLISQT 168 Query: 189 KKT-----SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T S I+ L + F FSI W WI +F +K+P++ FH WLP AHV+AP AG Sbjct: 169 TSTLMIPISEIVTLQG-NTF-FSINIW-WIITIVAFLVKMPVYGFHLWLPKAHVEAPVAG 225 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII--YASLVSMV----QT 297 S+ LA I+LK+GGYG IR + YF V +++ +I + +L++ + QT Sbjct: 226 SMILAAILLKLGGYGIIRM--------NAYFPDVTTLSAILTVICCWGALITSILCTRQT 277 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K LIAYSS+ HM V G + GA+ M++HGLVSSALF ++Y+R HTR Sbjct: 278 DLKALIAYSSVGHMSLVAAGTIVFSDWTISGAIMLMIAHGLVSSALFALANILYERTHTR 337 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +IF G ++ AN+GLP IGE +I + S +A + Sbjct: 338 NIFITRGFKMITVLLPFWWLISCAANLGLPPLPNLIGELYIITGIISWSIFLAPILGVAT 397 Query: 418 VLSALYSLWLYRK 430 V A+YSL +Y+ Sbjct: 398 VFGAIYSLLIYQN 410 >gi|68989212|ref|YP_254632.1| NADH dehydrogenase subunit 4 [Okamejei kenojei] gi|41216616|gb|AAR99695.1| NADH dehydrogenase subunit 4 [Okamejei kenojei] Length = 462 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 144/386 (37%), Positives = 222/386 (57%), Gaps = 11/386 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWK--SIQENFRE--YMIAFLVLESMVIGAFLSLDM 134 LG+D +S L+ LT +L P +L+S K S + + R+ Y+ + L+ +I AF + +M Sbjct: 57 LGIDPLSAPLLALTCWLLPLMLLASLKHLSSEPHKRQQIYISLLITLQITLIMAFSATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++V+ + T S Sbjct: 117 ILFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLVLQKDLGTLS 176 Query: 194 IIDL-YAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L Y S P+S ++W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 MLILQYPNSTNPYSWASKFW-WTACLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAA 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P + L++ II S + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIIVMLDPLTKEMAYPFLI-LAIWGIIMTSSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I GA M++HGL+SS LF Y+R+H+R + G +P Sbjct: 295 MGLVAAAILIQTPWSFAGATALMIAHGLISSMLFCLANTNYERIHSRTLLLARGTQIILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + +AN+ LP + +GE L+I S+F+ SN +L GV+L+A YSL++Y Sbjct: 355 LMGTSWFLANLANLALPPSPNLMGELLIISSLFKWSNWTIMLTGTGVLLTASYSLYMYLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMVY 456 G + + + L RE ++Y Sbjct: 415 TQRGPTP-QHLLFLTPSHTREHLLMY 439 >gi|270267659|ref|YP_003331337.1| NADH dehydrogenase subunit 4 [Bathytroctes michaelsarsi] gi|269994218|dbj|BAI50217.1| NADH dehydrogenase subunit 4 [Bathytroctes michaelsarsi] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 204/374 (54%), Gaps = 10/374 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRMYISLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L P + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLQYSQPLPLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLDPLSKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L Sbjct: 352 LFPLTAVWWFTANLANLALPPLPNLMGEIMIITTMFNWSPWTLALTGLGTLITAGYSLYL 411 Query: 428 YRKVVFGVSKCEKV 441 + G + + Sbjct: 412 FLMTQRGPTPAHMI 425 >gi|148543111|ref|YP_001260508.1| NADH dehydrogenase subunit 4 [Ammotragus lervia] gi|126742205|gb|ABO27124.1| NADH dehydrogenase subunit 4 [Ammotragus lervia] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/353 (36%), Positives = 201/353 (56%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L+VLT +L P +++S + + ++ I+ L+L + +I F + +++LF Sbjct: 59 DSLSTPLLVLTMWLLPLMLMASQHHLSKESLARKKLFISMLILLQLFLIMTFSAAELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + +I Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIHIQNTMGSLNFLI 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LQYWVQPMPNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L L P+ + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRITLLLNPI-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP T IGE V+ S F SN +L +V++ALYSL++ Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVTSTFSWSNITIILMGLNMVITALYSLYM 410 >gi|315501485|ref|YP_004080372.1| proton-translocating NADH-quinone oxidoreductase, chain m [Micromonospora sp. L5] gi|315408104|gb|ADU06221.1| proton-translocating NADH-quinone oxidoreductase, chain M [Micromonospora sp. L5] Length = 501 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 144/383 (37%), Positives = 227/383 (59%), Gaps = 13/383 (3%) Query: 65 IEYYHWIDYF------CSYHLGVDGIS-ILLVVLTTFLTPFCILSSWK--SIQENFREYM 115 ++ +H +D +HLGVDGIS L+V+ C + W+ + + R + Sbjct: 65 VQPWHQVDLTWVPGLDLRFHLGVDGISWPLVVLTALLTLLCCAYTLWRVPTGGGSGRALV 124 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 LV+E ++G FL+LD++LF++FFE L+PM+ +I WGG++R AA KF LYT FGS Sbjct: 125 ALLLVVEVGILGTFLALDLVLFFLFFEVVLLPMYAVIAGWGGADRRRAARKFALYTLFGS 184 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 + +L + V+ T+ ++ L + Q + +FA+K P++P H+WLP+A Sbjct: 185 VLLLVGVYVVVAAAGTADLVTLTGGAGLSRGTQLAAFTLLALAFAVKSPLWPLHSWLPDA 244 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H QAPT GSV LAG++LKMG YG IR + + P +++ APV+ L++ AI+ LV + Sbjct: 245 HTQAPTVGSVILAGVLLKMGTYGLIRVAVGVAPEGARWAAPVLGVLAVAAILVGGLVCLA 304 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+K+LIAYSS+ HMG+V +G+ + +G++ A+ ++HG+++ LFF G + DR H Sbjct: 305 QDDLKRLIAYSSVGHMGFVLLGVATLTATGIQAALIGNIAHGVITGLLFFLAGAVKDRAH 364 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN----TVAV 411 T + GL PR A ++ +A++GLPG +GF GE +++ Q T+AV Sbjct: 365 TGSLAELSGLRETAPRLAGLLGFAAVASLGLPGLAGFWGEAFAVVAAVQRGGPLWLTLAV 424 Query: 412 LASFGVVLSALYSLWLYRKVVFG 434 LA+ G L+A Y L L R+V G Sbjct: 425 LAALGGALTAAYFLRLLRRVTHG 447 >gi|51979795|gb|AAU20470.1| NADH dehydrogenase subunit 4 [Hydromantes italicus] Length = 457 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/385 (34%), Positives = 210/385 (54%), Gaps = 10/385 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLD 133 ++G+D IS L++LT +L P IL+S ++ N + Y+ +L+ +I AF S + Sbjct: 55 YMGLDYISSPLLILTCWLFPLLILASQNHLKNNSLSHQQTYIFMITILQMALILAFSSTE 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 115 LILFYITFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLTALIFLYTSLGSL 174 Query: 193 SIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 S+ L SK S +W+A +F IK+P++ H WLP AHV+AP AGS+ LA + Sbjct: 175 SMNLLLYSSKMLSMTSTNNILWLACLVAFMIKMPLYGAHLWLPKAHVEAPVAGSMILAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR L PL + +I L+L I+ L+ + Q D+K LIAYSS++H Sbjct: 235 LLKLGGYGIIRITLMFTPLTKLSYPFII--LALWGILMTGLICLRQADLKSLIAYSSVSH 292 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GA+ M+SHGL+SSALF Y+R H+R + GL +P Sbjct: 293 MGLVVAATLIQTPWSFTGAVILMISHGLISSALFCLANTNYERTHSRTMLLAQGLQITLP 352 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ + NM +P T GE ++++S+F S ++ G +++A Y+L ++ Sbjct: 353 LMATWWLLINLFNMAMPPTPNLWGEMVIMVSLFNWSPWSILITGLGALITAAYTLHMFLI 412 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G + ++ RE C++ Sbjct: 413 TQRG-RLPKHLKYTTPTFTREHCLM 436 >gi|9828503|gb|AAG00209.1| NADH dehydrogenase subunit 4 [Ochotona princeps] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 207/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + ++ F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESPPRKKLFISMLVLLQIFLVMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLVIITRWGNQAERLNAGTYFLFYTLMGSLPLLVALLYIHNTSGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLTNLALPPSINLIGELFVIISSFSWSNLTIILAGINMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|208433839|ref|YP_002265506.1| NADH dehydrogenase subunit 4 [Xenobalistes tumidipectoris] gi|207367013|dbj|BAG71991.1| NADH dehydrogenase subunit 4 [Xenobalistes tumidipectoris] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 203/363 (55%), Gaps = 14/363 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L DG+S L+VLT +L P IL+S + + R Y+ L+ +I AF + Sbjct: 54 NLYLATDGLSTPLLVLTCWLLPLMILASQNHLAQEPHSRQRMYISLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVLMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL---QN 170 Query: 191 TSSIIDLYAMSKF-PFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T+ + L A+ P W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 TTGTLSLLALQHAAPAHADTWASKFWWAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMLTVLDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 290 SSVSHMGLVVGGILIQSPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGF 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A+ + ++AN+ LP +GE +VI S+F S L G +++A YSL Sbjct: 350 QMALPLMAMWWFLASLANLALPPLPNLMGELMVITSLFSWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|110432770|gb|ABG74036.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/402 (32%), Positives = 209/402 (51%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKEPWERKKHFLFTLISLQLFLIMTFTTTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYTGPLNLFMMTYWSQEMPNSWSSSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITIILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM VT+ I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVTVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN ++ ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIIMTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G S L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGKSSYHTHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|30142174|gb|AAP13859.1| NADH dehydrogenase subunit 4 [Etheostoma obeyense] Length = 461 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 143/419 (34%), Positives = 224/419 (53%), Gaps = 24/419 (5%) Query: 19 VILFSSYLGCGRRSFFGVALGISTINFIFSL-FVWSVFDKGRSSFQMIEYYHWIDYFCSY 77 ++L + G + + AL S I + SL ++ S D G SS + Sbjct: 9 LMLIPTVWGAPPKWLWPTALTHSLIIAVVSLTWLKSASDTGWSSLGL------------- 55 Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTASEPLTRQRMYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLIIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSSGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L + F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITLQFSDSSQLTSFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL P I F +L +I V + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIVVMLDPLTKDLSYPFIIF-ALWGVIMTGSVCLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R+H+R + GL + Sbjct: 294 HMGLVIGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERMHSRTMLLARGLQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + + ++AN+ LP +GE +++ S+F S L G++++A YSL+++ Sbjct: 354 PLMTIWWFIASLANLALPPLPNLMGELMIVTSMFNWSWWTLALTGAGMLITASYSLYMF 412 >gi|207559794|gb|ACI24402.1| NADH dehydrogenase subunit 4 [Ammotragus lervia] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/353 (36%), Positives = 201/353 (56%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L+VLT +L P +++S + + ++ I+ L+L + +I F + +++LF Sbjct: 59 DSLSTPLLVLTMWLLPLTLMASQHHLSKESLTRKKLFISMLILLQLFLIMTFSAAELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + +I Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIHIQNIMGSLNFLI 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LQYWVQPMPNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L L P+ + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRITLLLNPI-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP T IGE V+ S F SN +L +V++ALYSL++ Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVTSAFSWSNITIILMGLNMVITALYSLYM 410 >gi|281376631|ref|YP_003331272.2| NADH dehydrogenase subunit 4 [Bathytroctes breviceps] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 204/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQSHISPEPVSRQRMYISLLTFLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLLLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV ++AN+ LP +GE ++I+++F S VL G +++A YSL+L+ Sbjct: 354 PLTAVWWFTASLANLALPPLPNLMGEIMIIVTMFNWSPWTLVLTGLGTLITAGYSLYLF 412 >gi|222539825|gb|ACM66279.1| NADH dehydrogenase subunit 4 [Apostichopus japonicus] gi|222539853|gb|ACM66305.1| NADH dehydrogenase subunit 4 [Apostichopus japonicus] Length = 453 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 202/373 (54%), Gaps = 28/373 (7%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI----GAF 129 F S+ L VD +S L++L+ +L P C L+ ++ N FL L +I F Sbjct: 50 FLSHSLAVDSLSAPLIILSCWLAPLCFLAQ-NVVKGNSGSLQNGFLALTCSIIFFLLLTF 108 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 SL++L F+I FEA+LIP V+I WG + ER+ A F YT FGS+ +L +IV++ Sbjct: 109 SSLNILSFFICFEATLIPTLVLITRWGANVERLQAGTYFLFYTLFGSLPLLVSIVLISQT 168 Query: 189 KKT-----SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T S I+ L + F FSI W WI +F +K+P++ FH WLP AHV+AP AG Sbjct: 169 TSTLMIPISEIVSLQG-NTF-FSINIW-WIITIVAFLVKMPIYGFHLWLPKAHVEAPVAG 225 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII--YASLVSMV----QT 297 S+ LA I+LK+GGYG IR + YF V +++ +I + +L++ + QT Sbjct: 226 SMILAAILLKLGGYGIIRM--------NAYFPDVTTLSAILTVICCWGALITSILCTRQT 277 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K LIAYSS+ HM V G + GA+ M++HGLVSSALF ++Y+R HTR Sbjct: 278 DLKALIAYSSVGHMSLVAAGTIVFSDWTISGAIMLMIAHGLVSSALFALANILYERTHTR 337 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +IF G ++ AN+GLP IGE +I + S +A + Sbjct: 338 NIFITRGFKMITVLLPFWWLISCAANLGLPPLPNLIGELYIITGIISWSIFLAPILGVAT 397 Query: 418 VLSALYSLWLYRK 430 V A+YSL +Y+ Sbjct: 398 VFGAIYSLLIYQN 410 >gi|75071114|sp|Q5Y4Q1|NU4M_BOSMU RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|52857758|gb|AAU89115.1| NADH dehydrogenase subunit 4 [Bos grunniens] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 200/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 MVGSLNF-LMLQYWVQPMHNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + + A LSL +I S + + QTD+K LI Sbjct: 229 MVLAAILLKLGGYGMLRITLILNPM-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIG 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V+ ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGMNMVIPALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|25057509|ref|NP_739681.1| NADH dehydrogenase subunit 4 [Diplacanthopoma brachysoma] gi|25005561|dbj|BAC23225.1| NADH dehydrogenase subunit 4 [Diplacanthopoma brachysoma] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 206/358 (57%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWK-SIQE--NFREYMIAFLV-LESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + QE N + I L+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHTAQEPDNRQRMFITLLISLQFFLILAFSATEV 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L M ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQYSETMQLSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMVMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGAILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGLQMVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 355 LMATWWFISSLANLALPPLPNLMGELMIITSLFNWSPWTLILTGTGTLITASYSLYMF 412 >gi|326370398|gb|ADZ56228.1| NADH dehydrogenase subunit 4 [Steno bredanensis] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 208/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L++++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLVMLQTLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YITFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGVNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|270267388|ref|YP_003331090.1| NADH dehydrogenase subunit 4 [Narcetes stomias] gi|269994302|dbj|BAI50295.1| NADH dehydrogenase subunit 4 [Narcetes stomias] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRMYISLLAFLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQVLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV ++AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 354 PLTAVWWFTASLANLALPPLPNLMGEIMIIATMFNWSPWTLALTGLGTLITAGYSLYLF 412 >gi|223471671|ref|YP_002587108.1| NADH dehydrogenase subunit 4 [Grampus griseus] gi|170027007|gb|ACB06058.1| NADH dehydrogenase subunit 4 [Grampus griseus] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 208/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L+ ++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLIMLQILLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YITFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALMYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGMNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|19343498|ref|NP_597964.1| NADH dehydrogenase subunit 4 [Ursus americanus] gi|19110554|gb|AAL85164.1|AF303109_10 NADH dehydrogenase subunit 4 [Ursus americanus] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/390 (34%), Positives = 207/390 (53%), Gaps = 29/390 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I AF +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLARKKLYITMLILLQLFLIMAFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLMPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLHT--QNNLGSLN 175 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 L +QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 176 FLM--------MQYWTQPLPNSWSSAFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL S + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLGPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMVAHGLTSSMLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T IGE V+++ F SN L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVVATFSWSNITIALMGTNIIITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SL++ G + V+ +K RE Sbjct: 407 SLYMLITTQRG-KYTDHVKSIKPSFTRENA 435 >gi|222835110|ref|YP_002586812.1| NADH dehydrogenase subunit 4 [Ataxolepis apus] gi|222051624|dbj|BAH15307.1| NADH dehydrogenase subunit 4 [Ataxolepis apus] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/359 (36%), Positives = 205/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + E R Y+ L+ +I AF + + Sbjct: 56 YMAADPLSAPLLVLTCWLLPLAILASQNHMLEEPLTRQRTYISLLTFLQLFLILAFTATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI EA+LIP VII WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 LIMFYIMLEATLIPTLVIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTL 175 Query: 193 SIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L ++ + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLPFSKTQQLGSYADKAW-WLGCLMAFLVKMPLYGIHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L II + + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIMVMLEPLTKELSYPFIIF-ALWGIIMTASICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTSWGFTGALTLMIAHGLASSALFCLANTNYERTHSRTMILARGLQILL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I ++F S ++ G V++A YSL+L+ Sbjct: 354 PLMASWWFIASLANLALPPLPNLMGELMIISALFNWSPWSLLITGTGTVITASYSLYLF 412 >gi|126215387|ref|YP_001054798.1| NADH dehydrogenase subunit 4 [Cymatogaster aggregata] gi|125625465|dbj|BAF46827.1| NADH dehydrogenase subunit 4 [Cymatogaster aggregata] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 208/363 (57%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWK--SIQENFREYM-IAFLV-LESMVIGAF 129 F + + D +S L+ LT +L P IL+S S + R+ M I+ L L+ +I AF Sbjct: 52 FLNLCMATDPLSTPLLALTCWLLPLMILASQNHTSTEPLNRQRMYISLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++L+FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVLMFYVMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQDS 171 Query: 189 KKTSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L YA M ++ ++W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYAAPMEMTSYADKFW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRMMIVLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMTAWWFIASLANLALPPLPNLMGEIMIISSLFNWSWWTLALTGTGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|190715208|dbj|BAG49445.1| NADH dehydrogenase subunit 4 [Bathylaco nigricans] Length = 461 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/374 (35%), Positives = 205/374 (54%), Gaps = 10/374 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHIAPEPVSRQRMYISLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L P ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLQHSQPLPLFSWADKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERTHSRTMMLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P V ++AN+ LP +GE ++I ++F S L G +++A YSL+L Sbjct: 352 LFPLTTVWWFTASLANLALPPLPNLMGEIMIITTMFNWSPWTLALTGLGTLITAGYSLYL 411 Query: 428 YRKVVFGVSKCEKV 441 + G + + Sbjct: 412 FLMTQRGPAPAHMI 425 >gi|80973002|gb|ABB53233.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/392 (33%), Positives = 207/392 (52%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQIHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LI Sbjct: 229 MVLAAVLLKLGGYGMMRITTILKPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIP 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|51339556|gb|AAU00538.1| NADH dehydrogenase subunit 4 [Helarctos malayanus] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/390 (33%), Positives = 205/390 (52%), Gaps = 29/390 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLILLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + + Sbjct: 118 FYILFEATLMPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLH---TQNNLGSL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + M QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NFLVM-------QYWAQPLPNSWSSMFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL S + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLHPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T IGE V+++ F SN L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVVATFSWSNITITLMGTNIIITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SL++ G + V+ +K RE Sbjct: 407 SLYMLITTQRG-KYTDHVKSIKPSFTRENA 435 >gi|288903334|ref|YP_003434061.1| NADH dehydrogenase subunit 4 [Hynobius yangi] gi|219562617|gb|ACL27766.1| NADH dehydrogenase subunit 4 [Hynobius yangi] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 208/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +LG+D +S L++LT +L P IL+S ++ N R Y+ ++L++ +I AF + + Sbjct: 55 YLGLDPLSSPLLILTCWLLPMMILASQNHLKNNPVNRQRMYISMMIILQASLILAFAATE 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 115 IIMFYIAFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLILQSYSGSL 174 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+ L S +S + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 SLFLLELTSPMQLMMYSDKIW-WAACLLAFMVKMPLYGMHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GG G +R + L PL+ + P I L+L +I ++ M QTD+K LIAYSS++ Sbjct: 234 VLLKLGGNGILRISIMLTPLSKELSYPFII-LALWGVIMTGMICMRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GA+ M+SHGL+SSALF + Y+R H+R + G + Sbjct: 293 HMGLVIAAALIQTPWSFSGAIILMISHGLISSALFCLANMNYERTHSRTLLLMRGAQVML 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A ++ ++NM LP + GE +++S+F SN ++ G +++A Y+L++Y Sbjct: 353 PLMATWWLLTNLSNMALPPSLSLWGELTIMVSLFNWSNWTILITGAGTLITASYTLYMY 411 >gi|207559864|gb|ACI24467.1| NADH dehydrogenase subunit 4 [Capra nubiana] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 126/355 (35%), Positives = 200/355 (56%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + ++ ++L+ +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESPTRKKTFISTLVLLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIHI--QNTVGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LILQYWAQPVPNSWSNVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITLLLNPI-TDYMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYSLYM 410 >gi|28881965|ref|NP_795738.1| NADH dehydrogenase subunit 4 [Lipolagus ochotensis] gi|28804852|dbj|BAC58143.1| NADH dehydrogenase subunit 4 [Bathylagus ochotensis] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 204/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLSCWLLPLMILASQNHTASEPTNRQRTYLSLLASLQMFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIILFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNHTG 173 Query: 191 TSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L YA ++ F + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLPYAQPLTLSSFGDKLW-WAGCLLAFLVKMPLYGIHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLDPLTKELAYPFIA-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF + Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANITYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A + +AN+ LP +GE ++I S+F S +L G +++A YSL+L Sbjct: 352 IFPLMATWWFIANLANLALPPLPNLMGELMIITSMFNWSPWTLILTGAGTLITASYSLYL 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|294679525|gb|ADF29567.1| NADH dehydrogenase subunit 4 [Globicephala macrorhynchus] Length = 458 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/383 (34%), Positives = 211/383 (55%), Gaps = 14/383 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF--REYMIAFLVLESMVIGAFLSLDMLLFY 138 D +S L++LT +L P +++S + ++E ++ I L+L++++I F + ++++FY Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQFHLLKEPLARKKLYITMLMLQTLLIMTFTATELIMFY 118 Query: 139 IFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL 197 I FE++LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 ITFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALMYL---QNTVGSLNF 175 Query: 198 YAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 176 LLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 235 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 KLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 294 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 LVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPLM 354 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 TTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGMNIVITALYSLYMLIMTQ 414 Query: 433 FGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 RG-KHTHHINNLTPTFTREHALM 436 >gi|283096355|ref|YP_003359188.1| NADH dehydrogenase subunit 4 [Nyctereutes procyonoides] gi|281371702|gb|ADA63634.1| NADH dehydrogenase subunit 4 [Nyctereutes procyonoides] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/389 (33%), Positives = 204/389 (52%), Gaps = 29/389 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S K + Y ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQYHLSKEPYTRKKLYASMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLHI--QNNMGSLSF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LM--------VQYWARPLPNSWSNILLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMMRVTTMLNPL-TNFMAYPFMLLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVVVAVLIQTPWSYMGATTLMIAHGLTSSMLFCLANSNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMATFSWSNITILLMGANIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KHTHHIKNIKPSFTRENT 435 >gi|280978429|ref|YP_003345355.1| NADH dehydrogenase subunit 4 [Stemonidium hypomelas] gi|271280574|dbj|BAI53376.1| NADH dehydrogenase subunit 4 [Stemonidium hypomelas] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 214/388 (55%), Gaps = 15/388 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L++L+ +L P IL+S ++ R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLILSCWLLPLMILASQNHMRLEPISRQRSYITLLVSLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG ER+ A F YT GS+ +L +++V+ + T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVSLLVLQKDLGTL 175 Query: 193 SIIDL-YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+I + YA P + W W +F IK+P++ H WLP AHV+AP AGS+ L Sbjct: 176 SMITIQYAK---PLILCSWGDKLWWAGCLVAFLIKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS Sbjct: 233 AAVLLKLGGYGMMRIIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFSLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSILLTGLGTLITAGYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L+ RE ++ Sbjct: 412 FLMTQRGPTP-NHIINLEPSHTREHLLI 438 >gi|222839263|ref|YP_002586997.1| NADH dehydrogenase subunit 4 [Cuora flavomarginata] gi|188503895|gb|ACD56040.1| NADH dehydrogenase subunit 4 [Cuora flavomarginata] Length = 458 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 211/388 (54%), Gaps = 12/388 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAF 129 F + +LGVD IS ++L+ +LTP I++ ++ R ++ ++L+ +I AF Sbjct: 51 FSNCYLGVDPISAPFLILSCWLTPMMIMAGQNNLIMEPTPRKRTFIFTTILLQFSLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE++L+P VII WGG ER+ A F YT GS+ +L A++ Sbjct: 111 STTELIMFFIAFESTLLPTLVIITRWGGQMERLNAGTYFLFYTLIGSLPLLVALLAAQTY 170 Query: 189 KKTSSI----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T SI + +Y P++ W W+A F +F IK+P++ H WLP AHV+AP AGS Sbjct: 171 SGTLSICTLQLSIYPNMTNPWTHTVW-WLALFTAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L P + P + L+L +I + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGIIRMTMTLAPPLKMFSYPFMM-LALWGVIMTGFICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+ HMG V + + GA+ M++HGL SS LF Y+R ++R + Sbjct: 289 YSSVGHMGLVIAAALTRTEWACTGAITLMIAHGLTSSMLFCLANTNYERTNSRTLLLARN 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ NM LP T +GE +I+S+F SNT ++ G +++A Y+ Sbjct: 349 MQLLLPLMGLWWFSASLTNMALPPTINLMGELTIIVSLFNWSNTTILMTGLGTLMAATYT 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++ +G + + + RE Sbjct: 409 LYMLIITQWGETP-SHTKTIPPTHTREH 435 >gi|157738569|ref|YP_001491392.1| NADH dehydrogenase subunit 4 [Kentrocapros aculeatus] gi|139000759|dbj|BAF51916.1| NADH dehydrogenase subunit 4 [Kentrocapros aculeatus] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/384 (34%), Positives = 207/384 (53%), Gaps = 23/384 (5%) Query: 53 SVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---- 108 ++FD G SS S ++ D +S L+ LT +L P IL+S Sbjct: 44 NLFDTGWSSL-------------SPYMATDPLSTPLLTLTCWLLPLMILASQNHTTLEPI 90 Query: 109 ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKF 167 R Y+ L+ +I AF + ++++FY+ FEA+LIP ++I WG +ER+ A F Sbjct: 91 NRQRMYITLLTSLQFFLILAFGATEVIMFYVMFEATLIPTLILITRWGNQTERLNAGTYF 150 Query: 168 FLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIP 224 YT GS+ +L A++++ T S++ L M + ++ + W W +F +K+P Sbjct: 151 LFYTLAGSLPLLVALLLLQNSTGTLSLLTLQYSDPMHLYTYADKLW-WAGCILAFLVKMP 209 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 ++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL + P I F +L Sbjct: 210 LYGVHLWLPKAHVEAPVAGSMILAAVLLKLGGYGMMRMLTVLEPLTKELSYPFIIF-ALW 268 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +I + + QTD+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Sbjct: 269 GVIMTGSICLRQTDLKSLIAYSSVSHMGLVVGGILIQTTWGFTGALILMIAHGLTSSALF 328 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 Y+R H+R + GL +P V ++AN+ LP +GE ++I S+F Sbjct: 329 CLANTNYERTHSRTMLLARGLQMALPLMTAWWFVASLANLALPPLPNLMGELMIITSLFN 388 Query: 405 NSNTVAVLASFGVVLSALYSLWLY 428 S L G +++A YSL+++ Sbjct: 389 WSWPTLALTGAGTLITAGYSLYMF 412 >gi|157736183|ref|YP_001491249.1| NADH dehydrogenase subunit 4 [Naso lopezi] gi|139000544|dbj|BAF51760.1| NADH dehydrogenase subunit 4 [Naso lopezi] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 203/363 (55%), Gaps = 14/363 (3%) Query: 78 HLG----VDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 HLG D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 HLGPYMATDPLSTPLLVLTCWLLPLMILASQNHTAPEPINRQRMYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEIIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L + P + + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 AGTLSLLTLQYANYIPLTTYADKMW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRMLVMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE +++ S+F S L G +++A YSL Sbjct: 350 QVALPLMATWWFIGSLANLALPPLPNLMGELMIMTSLFNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|126215415|ref|YP_001054811.1| NADH dehydrogenase subunit 4 [Ditrema temminckii] gi|125625479|dbj|BAF46840.1| NADH dehydrogenase subunit 4 [Ditrema temminckii] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + + D +S L+VLT +L P IL+S + R Y+ L+ +I AF Sbjct: 52 FLNLCMATDPLSTPLLVLTCWLLPLMILASQNHMSTEPLNRQRTYISLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++L+FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVLMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L M ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 AGTLSLLTLQYIPPMQMTSYADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRMMIVLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGAIILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLTTAWWFIASLANLALPPLPNLMGEIMIISSLFNWSWWTLALTGTGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|45388053|ref|NP_991050.1| NADH dehydrogenase subunit 4 [Ophisurus macrorhynchos] gi|45259611|dbj|BAD12360.1| NADH dehydrogenase subunit 4 [Ophisurus macrorhynchos] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S + R Y+ + L+ ++ AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMSLEPTNRQRSYITLLISLQILLTLAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLSLHKDLGTL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + P + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTMQYTDPLPLLSWGDKVW-WAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLTPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSMIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMML 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + +AN+ LP +GE ++I ++F S VL G +++A YSL+++ Sbjct: 354 PLMTAWWFISNLANLALPPLPNLMGEIMIITAMFNWSYWSIVLTGLGTLITAGYSLYMF 412 >gi|262399575|gb|ACY65540.1| NADH dehydrogenase subunit 4 [Pan troglodytes verus] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 135/403 (33%), Positives = 220/403 (54%), Gaps = 19/403 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LT +L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSLSFSSDPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ + Sbjct: 112 ATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALI---YTH 168 Query: 190 KTSSIIDLYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T +++ ++ + W MW+A+ +F +K+P++ H WLP AHV+AP AGS Sbjct: 169 NTLGSLNILLLTLTTQELSNTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L PL P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V I GA+ M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYS Sbjct: 348 LQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 L+++ +G S + +K RE +++ PI +L++ Sbjct: 408 LYMFTTTQWG-SLTHHINNMKPSFTRENTLMFLHLSPILLLSL 449 >gi|110432785|gb|ABG74048.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/402 (32%), Positives = 210/402 (52%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKEPWEGKKHFLFTLISLQLFLIMTFTTTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYTGTLNLFMMTYWSQEMPNSWSSSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITIILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM VT+ I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVTVAILIQTPWSFMGATPLMIAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN ++ ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIIMTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G S L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGKSSYHTHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|6648640|gb|AAF21268.1| NADH ubiquinone oxidoreductase subunit 4 [Abbottina rivularis] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/388 (33%), Positives = 210/388 (54%), Gaps = 15/388 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L++LT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLILTCWLLPLMILASQNHINPEPLNRQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +++S Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL---QQSS 172 Query: 193 SIIDLYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + + M P + W W +F +K+P++ H WLP AHV+ P AGS+ L Sbjct: 173 GTLSMLTMQYTQPLLLHSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEPPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL+ P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLDPLSKDLIYPFII-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGLQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A+ + +AN+ LP +GE ++I ++F S L G +++A YSL++ Sbjct: 352 IFPLTAIWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + +L RE ++ Sbjct: 412 FLMSQRGPTP-NHITKLPPFHTREHLLM 438 >gi|327492775|ref|YP_004347661.1| NADH dehydrogenase subunit 4 [Carinotetraodon salivator] gi|327392374|dbj|BAK09817.1| NADH dehydrogenase subunit 4 [Carinotetraodon salivator] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/386 (34%), Positives = 212/386 (54%), Gaps = 11/386 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + L D +S L++L+ +L P IL+S + R Y+ L+ ++ AF Sbjct: 52 FLNSCLATDPLSTPLLILSCWLLPLMILASQNHTAHDPMPRQRMYISLLTSLQFFLVLAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 AATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQKS 171 Query: 189 KKTSSIIDLY--AMSKFP-FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L+ A S P ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLTLFYPAPSDLPTYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILVVLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVIGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QVALPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIALTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRE 451 +++ G + V L+ RE Sbjct: 410 YMFLTTQRG-PLTKHVMTLEPSHTRE 434 >gi|289474183|gb|ADC97741.1| NADH dehydrogenase subunit 4 [Megaptera novaeangliae] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/356 (35%), Positives = 207/356 (58%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + R+ Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLIKEPPIRKKLYITMLITLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALLYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAQPLSTSWSNIFLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSVLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQVFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE LV+MS+F SN +L +V++ALY+L++ Sbjct: 355 MATWWLLASLTNLALPPTINLIGELLVVMSIFSWSNPTIILMGTNIVITALYTLYM 410 >gi|213136049|gb|ACJ43605.1| NADH dehydrogenase subunit 4 [Cynops pyrrhogaster] Length = 459 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/364 (35%), Positives = 204/364 (56%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + + VD IS L+VLT +L P L+S + ++ N R Y+I +L++ ++ AF Sbjct: 51 FTNMLMSVDSISSPLLVLTCWLLPLMTLASQEHLKTNPLPRQRTYLIMLTLLQASLVIAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S ++++FYI FE +LIP +II WG ER+ A F YT GS+ +L A++++ + Sbjct: 111 SSTELIMFYIAFETTLIPTLIIITRWGNQVERLNAGTYFLFYTLAGSLPLLIALLIL--Q 168 Query: 189 KKTSSIIDLYAMSKFPFSIQ----YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 S+ P +Q +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 169 NTLGSLSFTLTSVMEPMMLQNHTNKMLWLACLLAFMVKMPLYGAHLWLPKAHVEAPVAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR L P+ + P + L+L ++ L+ M QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGIIRITTILTPMTKEMSYPFLT-LALWGVVMTGLICMRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V I GA+ M+SHGL+SSALF + Y+R H+R + G Sbjct: 288 YSSVSHMGLVIAAIMIQTPWSTTGAIILMISHGLISSALFCLANMNYERTHSRTLLLVRG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P A + ++NM LP T GE +++S+F S ++ G +++A Y+ Sbjct: 348 AQAMLPLMAAWWITANLSNMALPPTMNLWGELTIMVSLFNWSPWTMLITGAGALITASYT 407 Query: 425 LWLY 428 L+++ Sbjct: 408 LYMF 411 >gi|16357202|ref|NP_443290.1| NADH dehydrogenase subunit 4 [Diaphus splendidus] gi|16266902|dbj|BAB70088.1| NADH dehydrogenase subunit 4 [Diaphus splendidus] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/376 (35%), Positives = 209/376 (55%), Gaps = 19/376 (5%) Query: 69 HWIDY-------FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIA 117 HW+ + F S +G D +S L++L+ +L P IL+S + R Y+ Sbjct: 40 HWLAHPSETGWSFVSPLMGTDPLSTPLLILSCWLLPLMILASQNHMTHEPISRQRTYISL 99 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSI 176 L+ +I AF + ++ +FY+ FEA+LIP ++I WG +ER+ A F YT GS+ Sbjct: 100 LTSLQFFLILAFGATEVFMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSL 159 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWL 232 +L A++++ E T S++ L SK P + W W +F +K+P++ H WL Sbjct: 160 PLLVALLLLQNETGTLSLLTL-QFSK-PLLMTTWSNKIWWAGCLIAFLVKMPLYGAHLWL 217 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P AHV+AP AGS+ LA ++LK+GGYG +R +L L PL+ + P I L+L +I + Sbjct: 218 PKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMLLLDPLSKELAYPFIV-LALWGVIMTGSI 276 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + QTD+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Y+ Sbjct: 277 CLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALVLMIAHGLASSALFCLANTNYE 336 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R H+R + G+ +P A + +AN+ LP +GE ++I S+F S +L Sbjct: 337 RTHSRTMVLARGMQTMLPLMATWWFISNLANLALPPLPNLMGELMIITSLFNWSPWTLIL 396 Query: 413 ASFGVVLSALYSLWLY 428 G +++A YSL+++ Sbjct: 397 TGAGTLITAGYSLYMF 412 >gi|280978387|ref|YP_003345316.1| NADH dehydrogenase subunit 4 [Nettastoma parviceps] gi|271280791|dbj|BAI53453.1| NADH dehydrogenase subunit 4 [Nettastoma parviceps] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 210/389 (53%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S + R Y+ + L+ ++ AF + Sbjct: 54 NMYLATDPLSTPLLVLSCWLLPLMILASQSHMMPEPVNRQRTYITLLISLQMLLTLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLTL--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLIMQHTKPLILVSWGDKMWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLNPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I ++F S ++ G +++A YSL+ Sbjct: 351 MILPLMAAWWFIINLANLALPPLPNLMGEIMIITAMFNWSYWSIIITGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L RE ++ Sbjct: 411 MFIMTQRGPTP-NHIMGLDPSHTREHLLI 438 >gi|261348423|gb|ACX70678.1| NADH dehydrogenase subunit 4 [Oryzias javanicus] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/358 (36%), Positives = 199/358 (55%), Gaps = 10/358 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S + D +S L+VLT +L P IL+S ++ R Y+ + L+ +I AF + Sbjct: 54 STFMATDPLSTPLLVLTCWLLPLMILASQNHMKHEPTNRQRTYISLLISLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEMIMFYVMFEATLIPTLVIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSAG 173 Query: 191 TSSIIDLYAMSKFPFSIQ---YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S + S Q W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSFLTTQFFQPLEMSSQASKLW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL SQ P I L+L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRVIIVLDPLTSQLSYPFIV-LALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V G+ G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGVLIQTPWGFTGALVLMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + T+AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 352 VLPLMASWWFISTLANLALPPLPNLMGELMIITSLFNWSFWTLILTGAGTLITASYSL 409 >gi|295293530|gb|ADF88074.1| NADH dehydrogenase subunit 4 [Pan troglodytes troglodytes] gi|295293572|gb|ADF88113.1| NADH dehydrogenase subunit 4 [Pan troglodytes troglodytes] gi|295293586|gb|ADF88126.1| NADH dehydrogenase subunit 4 [Pan troglodytes troglodytes] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 137/402 (34%), Positives = 222/402 (55%), Gaps = 17/402 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LT +L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSLPFSSDPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ Sbjct: 112 ATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTL 171 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + +I+ L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 GSLNIL-LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSM 229 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAY Sbjct: 230 VLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HM V I GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 289 SSVSHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGL 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL Sbjct: 349 QTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSL 408 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +++ +G S + +K RE +++ PI +L++ Sbjct: 409 YMFTTTQWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|148922806|ref|YP_001293836.1| NADH dehydrogenase subunit 4 [Odaxothrissa vittata] gi|148762712|dbj|BAF64149.1| NADH dehydrogenase subunit 4 [Odaxothrissa vittata] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 135/360 (37%), Positives = 205/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK--SIQENFREYM-IAFLV-LESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S S + R+ M I+ L L++ +I AF + + Sbjct: 56 YMAIDPLSAPLLVLTCWLLPLMILASQNHTSTEPISRQRMYISLLASLQAFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTL--QSSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMITLNFGQPLTLMSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRMTTVLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S VL G +++A YSL+L+ Sbjct: 353 FPLTATWWFIANLANLALPPLPNLMGEVMIITTMFNWSPWTLVLTGVGTLITAGYSLYLF 412 >gi|269994176|dbj|BAI50178.1| NADH dehydrogenase subunit 4 [Bathytroctes breviceps] Length = 461 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 204/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQSHISPEPVSRQRMYISLLTFLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLLLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV ++AN+ LP +GE ++I+++F S VL G +++A YSL+L+ Sbjct: 354 PLTAVWWFTASLANLALPPLPNLMGEIMIIVTMFNWSPWTLVLTGLGTLITAGYSLYLF 412 >gi|158966662|ref|YP_001531186.1| NADH dehydrogenase subunit 4 [Stylephorus chordatus] gi|158853274|dbj|BAF91457.1| NADH dehydrogenase subunit 4 [Stylephorus chordatus] gi|158853288|dbj|BAF91470.1| NADH dehydrogenase subunit 4 [Stylephorus chordatus] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/357 (36%), Positives = 203/357 (56%), Gaps = 10/357 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDML 135 D +S L++L+ +L P IL+S I R Y+ + L+ +I AF + +M+ Sbjct: 58 ATDPLSTPLLILSCWLLPLMILASQNHIAPEPINRQRMYLTLLITLQLFLIMAFGATEMI 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 LFY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S+ Sbjct: 118 LFYVMFEATLIPTLLIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLMLQNDTGTLSL 177 Query: 195 IDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + L+ + + W W A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 178 LVLHYTKPLFLLTYGDKLW-WAACLLAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAAVL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R ++ L PL+ + P + L+L +I + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGMMRLMVMLEPLSKEMIYPFMA-LALWGVIMTGSICLRQTDLKSLIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 296 GLVAGGILIQTPWGFTGALVLMIAHGLASSALFCLANTNYERTHSRVMVLARGLQMVLPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A ++AN+ LP +GE +++ S+F S VL G +++A YSL+++ Sbjct: 356 MATWWFTASLANLALPPLPNLMGELMILTSLFSWSMWTLVLTGSGTLITAAYSLYMF 412 >gi|327492817|ref|YP_004347700.1| NADH dehydrogenase subunit 4 [Tetraodon palembangensis] gi|327392388|dbj|BAK09830.1| NADH dehydrogenase subunit 4 [Tetraodon palembangensis] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 201/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTTHEPINRQRTYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 AATEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S+ L + S + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLFTLLHTTPLQLSTYADKIW-WTGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILMALEPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGAVILMIAHGLTSSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QTALPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTILLTGLGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|295293488|gb|ADF88035.1| NADH dehydrogenase subunit 4 [Pan troglodytes troglodytes] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 137/402 (34%), Positives = 222/402 (55%), Gaps = 17/402 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LT +L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSLAFSSDPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ Sbjct: 112 ATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTL 171 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + +I+ L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 GSLNIL-LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSM 229 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAY Sbjct: 230 VLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HM V I GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 289 SSVSHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGL 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL Sbjct: 349 QTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSL 408 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +++ +G S + +K RE +++ PI +L++ Sbjct: 409 YMFTTTQWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|316926515|ref|YP_004111305.1| NADH dehydrogenase subunit 4 [Capra hircus] gi|261864016|gb|ACY01507.1| NADH dehydrogenase subunit 4 [Capra hircus] gi|270153126|gb|ACZ61139.1| NADH dehydrogenase subunit 4 [Capra hircus] gi|270153140|gb|ACZ61152.1| NADH dehydrogenase subunit 4 [Capra hircus] gi|270153154|gb|ACZ61165.1| NADH dehydrogenase subunit 4 [Capra hircus] gi|270153168|gb|ACZ61178.1| NADH dehydrogenase subunit 4 [Capra hircus] gi|283049413|gb|ADB07179.1| NADH dehydrogenase subunit 4 [Capra hircus] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 201/355 (56%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLLKESPTRKKLFISMLVLLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIHI--QNTVGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWAQPVPNSWSNVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITLLLNPI-TDYMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYSLYM 410 >gi|88061950|gb|ABD38954.1| NADH dehydrogenase subunit 4 [Cynoscion nebulosus] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAF 129 F + ++ D +S L+VLT +L P IL+S + QE R Y+ L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLVLTCWLLPLMILASQNHTAQEPINRQRMYITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L P + + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQFSDPTPLTTLADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG IR L L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMIRILPMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QVALPLMATWWFIASLANLALPPLPNLMGELMMITSLFNWSWWTLALTGTGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|215979563|ref|YP_002333072.1| NADH dehydrogenase subunit 4 [Takifugu exascurus] gi|215422751|dbj|BAG85583.1| NADH dehydrogenase subunit 4 [Takifugu exascurus] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 211/387 (54%), Gaps = 11/387 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 STTEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLGQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVTLDPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRER 452 +++ G + + L+ RE Sbjct: 410 YMFLMTQRGPAP-NHLLALEPSHTREH 435 >gi|155368551|emb|CAM98568.1| NADH dehydrogenase subunit 4 [Ailuropoda melanoleuca] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/394 (33%), Positives = 202/394 (51%), Gaps = 37/394 (9%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLVLTTWLLPLMLMASQFHLSKETLTRKKLYITMLILLQLFLIMTFSATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A+ Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLVAL------------- 164 Query: 196 DLYAMSKFP----FSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 LYA + +QYW MW+A +F +K+P++ H WLP AHV+A Sbjct: 165 -LYAQNSLGSLNFLMVQYWTQPLPNSWSNIFMWLACMMAFMVKMPLYGLHLWLPKAHVEA 223 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGS+ LA ++LK+GGYG +R L PL + + A LSL +I S + + QTD+ Sbjct: 224 PIAGSMVLAAVLLKLGGYGMMRITTMLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDL 282 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K LIAYSS++HM V + I GA M++HGL SS LF Y+R H+R + Sbjct: 283 KSLIAYSSVSHMALVIVAILIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTM 342 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 G +P A ++ + N+ LP T IGE V+M+ F SN +L + + Sbjct: 343 ILARGSQTLLPLMAAWWLLAGLTNLALPPTINLIGELFVVMATFSWSNITILLMGVNITI 402 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 +ALYSL++ G + ++ +K RE Sbjct: 403 TALYSLYMLISTQRG-KYTDHIKNIKPSYTRENA 435 >gi|53686484|ref|YP_097033.1| NADH dehydrogenase subunit 4 [Aneides flavipunctatus] gi|51979781|gb|AAU20457.1| NADH dehydrogenase subunit 4 [Aneides flavipunctatus] Length = 458 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 209/362 (57%), Gaps = 17/362 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFL-VLESMVIGAFLSLD 133 +LG+D IS L+VLT +L P IL+S +++N F++ I+ L +L+ +I AF + + Sbjct: 55 YLGLDQISSPLLVLTCWLMPLMILASQNHLKKNSIIFQKTYISMLFMLQMALILAFSATE 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 115 LILFYIAFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLYLSTFIGSL 174 Query: 193 SI------IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ +++ M+ + +W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 175 SLEFLMIYPNMFVMT----TTNKILWFGCMMAFMVKMPLYGAHLWLPKAHVEAPVAGSMI 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR L P+ + +I L+L ++ SL+ + Q D+K LIAYS Sbjct: 231 LAAVLLKLGGYGIIRITLMFTPMIELSYPFII--LALWGVLMTSLICIRQADLKSLIAYS 288 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 SI+HMG V GA+ M+SHGLVSSALF + Y+R H+R + GL Sbjct: 289 SISHMGLVVAATLIQTPWSFTGAVILMISHGLVSSALFCLANMNYERTHSRTMLLARGLQ 348 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A ++F + NM LP T GE ++I+S+F S ++ G +L+A Y+L+ Sbjct: 349 ATLPLMATWWLLFNLLNMALPPTPNLWGELIIIISLFNWSPWTILIMGLGTLLTAAYTLY 408 Query: 427 LY 428 +Y Sbjct: 409 MY 410 >gi|289183115|ref|YP_003457105.1| NADH dehydrogenase subunit 4 [Oneirodes thompsoni] gi|288908935|dbj|BAI77179.1| NADH dehydrogenase subunit 4 [Oneirodes thompsoni] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/382 (33%), Positives = 209/382 (54%), Gaps = 11/382 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+ LT +L P IL+S + R Y++ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLALTCWLLPLMILASQNHMASEPLNRQRAYIMLLTSLQLFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++V+ T Sbjct: 116 IIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLVLQNNTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + P + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSTPAPLTTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I F +L ++ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVVLEPLTKELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ + Sbjct: 294 HMGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGMQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + ++AN+ LP +GE +++ S+F S+ L G +++A YSL+++ Sbjct: 354 PLMTSWWFIASLANLALPPLPNLVGELMILTSLFNWSHWTIALTGSGTLITAAYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRE 451 G + + L+ RE Sbjct: 414 TTQRGPAPSHML-ALEPSHTRE 434 >gi|189492452|gb|ACE01175.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492466|gb|ACE01188.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKELLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|89257284|ref|YP_514732.1| NADH dehydrogenase subunit 4 [Grasseichthys gabonensis] gi|88759282|dbj|BAE79964.1| NADH dehydrogenase subunit 4 [Grasseichthys gabonensis] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 140/401 (34%), Positives = 219/401 (54%), Gaps = 13/401 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFL 130 +Y++ D +S L+VLT +L P IL+S + N + I+ L L+ +I AF Sbjct: 53 ANYYMATDPLSTPLLVLTCWLLPMMILASQNHMSSEPINRQRLYISLLTSLQVFLIMAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++ +FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E Sbjct: 113 ATEIFMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQTET 172 Query: 190 KTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ L ++ + +S + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 GTLSMLTLQFSKPLALYSWSSKIW-WAGCMIAFLVKMPLYGAHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L P + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMSIILDPATKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVVGGILIQTPWGFTGAIALMIAHGLASSALFCLANTSYERTHSRTLVLTRGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE L+I S+F S ++ G +++A YSL+ Sbjct: 351 MIFPLSATWWFLMNLANLALPPLPNLMGELLIITSMFNWSPWTIIITGAGTLITACYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERC--MVYPIAVLTVFF 465 L+ G + + L RE M++ I ++ + F Sbjct: 411 LFLMSQRGPTPTHMI-NLPPSHTREHLLMMLHVIPIIMLIF 450 >gi|295641085|gb|ADG22634.1| NADH dehydrogenase subunit 4 [Mustela putorius] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/389 (33%), Positives = 207/389 (53%), Gaps = 31/389 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ +I F + ++++F Sbjct: 59 DSLSTPLLVLTTWLLPLMLMASQHHLSKETLTRKKLYITMLVMLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + ++ Sbjct: 119 YILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLW---LQNNLGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L M QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 LLIM-------QYWAQPLPNSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL S Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITMLLNPLTS-YMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIMAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T +GE V+M+ F SN L + ++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIALMGVNITITALYS 407 Query: 425 LWLYRKVVFGVSKC-EKVQQLKDLSLRER 452 LY + KC ++ +K RE Sbjct: 408 --LYMLITTQRGKCTHHIKNIKPSFTREN 434 >gi|288898384|gb|ADC66695.1| NADH dehydrogenase subunit 4 [Ursus arctos] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/391 (34%), Positives = 205/391 (52%), Gaps = 31/391 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLVLLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLHT--QNNLGSLN 175 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 L +QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 176 FLL--------MQYWTQPLPNSWSSMFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL S + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLGPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSLLFCLANSNYERTHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T IGE V+++ F SN L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLSLPPTINLIGELFVVVATFSWSNITITLMGTNIIITALY 406 Query: 424 SLWLYRKVVFGVSKC-EKVQQLKDLSLRERC 453 S LY + KC V+ +K RE Sbjct: 407 S--LYMLITTQRGKCTNHVKSIKPSFTRENA 435 >gi|223937088|ref|ZP_03628996.1| proton-translocating NADH-quinone oxidoreductase, chain M [bacterium Ellin514] gi|223894369|gb|EEF60822.1| proton-translocating NADH-quinone oxidoreductase, chain M [bacterium Ellin514] Length = 514 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 136/419 (32%), Positives = 227/419 (54%), Gaps = 12/419 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDML 135 +YH+GVDGI++ L+++ + SW I +E+ I LV+ ++GAF SLD+ Sbjct: 77 NYHVGVDGINVGLILMGAIVAFAAACVSW-DINSRDKEFYILLLVMTGGILGAFASLDIF 135 Query: 136 LFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FY F E +L+P F++IGVWG G + YA ++ LY G++ L ++ + + K ++ Sbjct: 136 MFYFFHELALVPTFIMIGVWGRGENKNYATFQITLYLSIGALISLVGLIAL-YVKSGANT 194 Query: 195 IDLYAMSKF----PFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 D+ A++ + P S+ Q +++ F I I ++PFHTW P + APTA ++ A Sbjct: 195 FDIVALTTYVKDHPISLHDQNFIFPLLLFGFGILISLWPFHTWAPLGYGSAPTATAMLHA 254 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++ K G YG IR LPL P A+ + VI +L L I Y LV+M Q + LI YSS+ Sbjct: 255 GVLKKFGLYGLIRIALPLLPQATHSWINVIAWLCLGNIFYCGLVAMRQKNFNWLIGYSSV 314 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 AHMG+V +GI S G+ GA+ M++HG +++ F G +Y T ++ GGL+ Sbjct: 315 AHMGFVFLGIASLNLIGITGAVLVMIAHGFLAALSFGLSGYLYHITGTLEMDKMGGLLRK 374 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV-VLSALYSLWL 427 +P +M+ A GLPG + F GE + ++ + +A +G V+ A+Y L Sbjct: 375 LPFLGTALMMALFAGCGLPGFANFAGEVTIFFGAYKTYPLITGIAVWGASVIGAVYMLRA 434 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF-FGIYPVPIRDTFSVPLSSIIE 485 R ++ GV EK + + + R + Y I ++++ FG +P + + I++ Sbjct: 435 IRNMLHGVVP-EKFMGVAESAFPHRKVPYLILLVSLLVFGFFPRLLTEKIEPSAKRIVD 492 >gi|14647175|ref|NP_148947.1| NADH dehydrogenase subunit 4 [Oncorhynchus tshawytscha] gi|14595681|gb|AAK70894.1|AF392054_10 NADH dehydrogenase subunit 4 [Oncorhynchus tshawytscha] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 201/360 (55%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHLSPEPLNRQRTYISLLVSLQMFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A+++M + T Sbjct: 116 IIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLMQNDSGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMFTLQYTQ--PLYLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L++ II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LAMWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 293 GHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+L+ Sbjct: 353 LPLMTTWWFMASLANLALPPLPNLMGELMIITSMFNWSYWTLILTGLGTLITASYSLYLF 412 >gi|16357384|ref|NP_443693.1| NADH dehydrogenase subunit 4 [Helicolenus hilgendorfi] gi|16267294|dbj|BAB70413.1| NADH dehydrogenase subunit 4 [Helicolenus hilgendorfi] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 201/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQGHTALEPINRQRMYITLLTSLQVFLIMAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + + S Sbjct: 117 LMFYVMFEATLIPTLILITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLLLQKDTGSLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ + + P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTIQYANTTPLSSYADKLW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR ++ L PL + P I L+L +I + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMVMLDPLTKELSYPFII-LALWGVIMTGSTCLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+RLH+R + GL +P Sbjct: 295 MGLVVGGILIQTPWGFAGAVILMIAHGLTSSALFCLANTNYERLHSRTMLLARGLQMVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE L+I S+F S VL G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPLPNLMGELLIITSLFGWSWWTLVLTGAGTLITASYSLYMF 412 >gi|299823700|ref|YP_003734494.1| NADH dehydrogenase subunit 4 [Amazonsprattus scintilla] gi|299758107|dbj|BAJ09966.1| NADH dehydrogenase subunit 4 [Amazonsprattus scintilla] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 211/386 (54%), Gaps = 11/386 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S Q R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSSPLLVLTCWLLPLMILASQNHTQAEPISRQRMYISLLTSLQAFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLALQASTGSL 175 Query: 193 SIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L ++ + + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMVTLNFNQPLTLIHQADKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR L PL + P I L+L I+ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRITPILDPLTKEMAYPFIV-LALWGIVMTGTICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI + G+ GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 294 HMGLVAGGILTQTPWGLTGAIILMIAHGLTSSALFCLANTSYERTHSRTMALARGMQTLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A + +AN+ LP +GE ++I +++ S VL G +++A YSL+++ Sbjct: 354 PLTATWWFIANLANLALPPLPNLMGEVMIITTMYNWSPWSIVLTGLGTLITAGYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 414 MTQRGQTPTH-ITALPPYHTREHLLI 438 >gi|270267486|ref|YP_003331181.1| NADH dehydrogenase subunit 4 [Alepocephalus bairdii] gi|269994120|dbj|BAI50126.1| NADH dehydrogenase subunit 4 [Alepocephalus bairdii] Length = 461 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRTYISLLTSLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 354 PLTAVWWFTANLANLALPPLPNLMGEIMIISTMFNWSPWTLALTGLGTLITAGYSLYLF 412 >gi|219560197|gb|ACL27323.1| NADH dehydrogenase subunit 4 [Delphinus delphis] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 208/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L+ ++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLVMLQVLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YIMFEATLIPTLIMITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGVNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|156186504|gb|ABU55496.1| NADH dehydrogenase subunit 4 [Danionella sp. 0091] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/388 (34%), Positives = 211/388 (54%), Gaps = 15/388 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHMNTEPINRQRVYITLLTFLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++T+ Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL---QQTT 172 Query: 193 SIIDLYAMSKFP----FSIQYWMWIA-FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + + M P S+ + +W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 GTLSMLIMQHTPNMDLTSLGHMIWWAGCLIAFLVKMPLYGMHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL+ + P I L+L I+ L + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRIMVMLDPLSKELAYPFII-LALWGILMTGLTCLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VGHMGLVAGGILIQTPWGFSGAVILMIAHGLTSSALFCLANTTYERTHSRTMILARGMQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P + +AN+ LP +GE +I ++F S ++ G +++A YSL+L Sbjct: 352 IFPTMTTWWFIANLANLALPPLPNLMGELTIISALFNWSPWTIIITGLGTLIAASYSLYL 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G E + L RE ++ Sbjct: 412 FITTQRG-QVPEHIINLPPSHTREHLLM 438 >gi|153581764|emb|CAO79691.1| NADH dehydrogenase 4 [Hippoglossus stenolepis] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 211/387 (54%), Gaps = 15/387 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S K R Y+ L+ +I AF + ++ Sbjct: 57 MATDSLSTPLLVLTCWLLPLMILASQKHTALEPLSRQRMYITLLASLQFFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 VMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTSGTLS 176 Query: 194 II-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ D A+S + + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 LLTVHYTDPLALSSY--ADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR + L PL + P I F +L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRMMTMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQSPWGLTGALTLMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQVA 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMATWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G V L+ RE ++ Sbjct: 413 LMTQRGPLPTH-VIALEPSHTREHLLI 438 >gi|71658046|ref|YP_271998.1| NADH dehydrogenase subunit 4 [Cobitis sinensis] gi|44887485|gb|AAS48074.1| NADH dehydrogenase subunit 4 [Cobitis sinensis] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 214/389 (55%), Gaps = 14/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 +++L D +S L+VL+ +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NFYLATDPLSTPLLVLSCWLLPLMILASQNHINPKPINRQRLYITLLVSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 ++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 -VSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 350 MIFPLTAVWWFIANLANLALPPLPNLMGELTIISALFNWSPWTILLTGTGTLITAGYSLY 409 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + V L RE ++ Sbjct: 410 LFLMSQRGPTPTHIV-GLPPFHTREHLLM 437 >gi|10864683|ref|NP_067144.1| NADH dehydrogenase subunit 4 [Sigmops gracilis] gi|12483624|dbj|BAB21446.1| NADH dehydrogenase subunit 4 [Sigmops gracilis] Length = 457 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 137/384 (35%), Positives = 208/384 (54%), Gaps = 11/384 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S++L D +S L++LT +L P IL+S I R +M ++L++ +I AF S Sbjct: 54 SHYLAPDLLSTPLLILTCWLLPLMILASQNHISLEPTGRQRSFMTLLVLLQTSLILAFGS 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++ +F+I FEA+LIP II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEITMFFIMFEATLIPTLFIITRWGNQTERLNAGTYFLFYTLTGSLPLLIALLLLQKDTT 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLMTLQFTKPLQPSSYGDKLW-WAGCLAAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L L PL P+I L+L ++ + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRMTLVLNPLTKHLAYPIIA-LALWGVVVMGSACLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V GI G GA M++HGL SSALF Y+R++TR + G+ Sbjct: 292 VSHMALVAGGILIQTPWGFYGATMLMIAHGLTSSALFCLANTYYERVNTRTMLIIRGMQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P + ++AN+ LP +GE L+I S+F S +L G +++A YSL L Sbjct: 352 ISPTITTWWLTASLANLALPPLPNLMGELLIISSMFNWSYWTLLLTGAGTLITATYSLHL 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRE 451 Y G S + + L+ RE Sbjct: 412 YLVTQQGPSP-QHITSLEPPHTRE 434 >gi|25057683|ref|NP_739928.1| NADH dehydrogenase subunit 4 [Sargocentron rubrum] gi|25005897|dbj|BAC23524.1| NADH dehydrogenase subunit 4 [Sargocentron rubrum] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 203/361 (56%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTKAEPHNRQRTYISLLTTLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLMGSLPLLIALLLL--QNSTG 173 Query: 193 SIIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 ++ L PF + + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLQYAKPFQLLSLGDKLW-WAACLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRILVVLDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALLLMIAHGLASSALFCLANTNYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ILPLMTTWWFMASLANLALPPLPNLMGELMIITSLFNWSWWTLLLTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|242912966|ref|YP_002970911.1| NADH dehydrogenase subunit 4 [Trionyx triunguis] gi|239937439|dbj|BAH79153.1| NADH dehydrogenase subunit 4 [Trionyx triunguis] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/403 (32%), Positives = 217/403 (53%), Gaps = 25/403 (6%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L++L+ +LTP IL+S + R ++ ++L++++I F + D Sbjct: 56 NLATDQVSTPLIILSCWLTPLMILASQNHLSTEPLPRKRTFITTVILLQTLLIMTFSATD 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++F++ FEA+LIP ++I WG ER+ A F YT GS+ +L A++ + T+ Sbjct: 116 LMMFFVLFEATLIPTLMMITRWGNQMERLNAGTYFLFYTLIGSLPLLIALLSL--YSNTN 173 Query: 193 SIIDLYAMSKFPFSIQYW---MWI-AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ P W MW+ A +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMPTMQLNPPTMTNTWTNSMWLLAALTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPL-FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 I+LK+GGYG IR ++ + Y+ L+L II L+ + QTD+K LIAYSS Sbjct: 234 AILLKLGGYGIIRIMMTTALTFKTPYYP--FMILALWGIIMTGLICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V + + GA+ M++HGL SS LF Y+R+H+R + + Sbjct: 292 VSHMGLVIAATLTQTEWAYTGAITIMIAHGLTSSMLFCLANTNYERIHSRTLLLTQNMQL 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P ++ ++ NM LP T +GE +I S+F S+ +L G +++A Y+L + Sbjct: 352 LLPLMGTWWLIASLTNMALPPTINLMGELTIITSLFNWSHPTIILTGLGTLITATYTLHM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLS---LRERCM----VYPIAVLTV 463 + +G E Q +K ++ RE + V P+ +LT+ Sbjct: 412 FSSTQWG----ELPQHMKTITPTHTREHLIMTLHVLPMMLLTL 450 >gi|229929320|ref|YP_002887607.1| NADH dehydrogenase subunit 4 [Rhinoceros sondaicus] gi|229473106|gb|ACQ73080.1| NADH dehydrogenase subunit 4 [Rhinoceros sondaicus] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 203/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P I++S + + + Y+ ++L+ ++I F + +++ F Sbjct: 59 DPLSAPLLVLTTWLLPLMIMASQHHLSKEPLSRKKLYITMLIMLQLLLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A + F YT GS+ +L A++ + + T S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGFYFLFYTLTGSLPLLIALIHI--QNITGSLNL 176 Query: 197 L---YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L Y+ P S ++W+A F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LLIQYSTQTLPNSWSSIFLWLACMMGFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL S P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITMILNPLTSHMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATTLMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T +GE V+++ F SN +L ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLVGELFVVVASFSWSNLTIILMGTNIIITALYSLYM 410 >gi|192288429|ref|YP_001994349.1| NADH dehydrogenase subunit 4 [Sagamichthys abei] gi|190715222|dbj|BAG49458.1| NADH dehydrogenase subunit 4 [Sagamichthys abei] Length = 466 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 139/388 (35%), Positives = 209/388 (53%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPLSRQRMYISLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPLAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II V + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLDPLTKEMTYPFIV-LALWGIIMTGSVCLRQTDLKLLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R HTR + GL Sbjct: 292 VGHMGLVAGGILVQTPWGFTGAIILMIAHGLTSSALFCLANTGYERTHTRTMALTRGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P V +AN+ LP +GE ++I ++F S L G +++A YSL+L Sbjct: 352 LFPLATVWWFTANLANLALPPLPNLMGEIMIISTMFNWSPWTLALTGIGTLITAGYSLYL 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L RE ++ Sbjct: 412 FLMTQRGPTPTHMI-GLPPYHTREHLLM 438 >gi|300508101|dbj|BAJ11485.1| NADH dehydrogenase subunit-4 [Cobitis striata] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 211/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVSLQTFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ LP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLHSWGHMFWWAGCLIAFLVKMPLYGTQPQLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF IY+R H+R + GL Sbjct: 291 SVSHMGLVAGGILVQTPWGFTGAIILMIAHGLVSSALFCLANTIYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLTATWWFIANLANLALPPLPNLMGELTIISTLFNWSPWTILLTGVGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTP-PHITGLPPFHTREHLLL 438 >gi|262399561|gb|ACY65527.1| NADH dehydrogenase subunit 4 [Pan troglodytes troglodytes] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 137/402 (34%), Positives = 222/402 (55%), Gaps = 17/402 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LT +L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSLPFSSDPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ Sbjct: 112 ATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTL 171 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + +I+ L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 GSLNIL-LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSM 229 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAY Sbjct: 230 VLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HM V I GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 289 SSVSHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGL 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL Sbjct: 349 QTLLPLMAFWWLLASLANLALPPTINLLGELSVLVASFSWSNTTLLLTGFNMLITALYSL 408 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +++ +G S + +K RE +++ PI +L++ Sbjct: 409 YMFTTTQWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|270267631|ref|YP_003331311.1| NADH dehydrogenase subunit 4 [Bajacalifornia megalops] gi|269994204|dbj|BAI50204.1| NADH dehydrogenase subunit 4 [Bajacalifornia megalops] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 204/375 (54%), Gaps = 12/375 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NQYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRMYISLLASLQTCLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ + P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMMTLQYSQPLLLLSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMIMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV ++AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MLFPLTAVWWFTASLANLALPPLPNLMGEIMIITTMFNWSPWTLALTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKV 441 L+ G + + Sbjct: 411 LFLMTQRGPTPAHMI 425 >gi|237506904|gb|ACQ99208.1| NADH dehydrogenase subunit 4 [Apostichopus japonicus] Length = 456 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 202/373 (54%), Gaps = 28/373 (7%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI----GAF 129 F S+ L VD +S L++L+ +L P C L+ ++ N FL L +I F Sbjct: 50 FLSHSLAVDSLSAPLIILSCWLAPLCFLAQ-NVVKGNSGSLQNGFLALTCSIIFFLLLTF 108 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 SL++L F+I FEA+LIP V+I WG + ER+ A F YT FGS+ +L +IV++ Sbjct: 109 SSLNILSFFICFEATLIPTLVLITRWGANVERLQAGTYFLFYTLFGSLPLLVSIVLISQT 168 Query: 189 KKT-----SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T S I+ L + F FSI W W+ +F +K+P++ FH WLP AHV+AP AG Sbjct: 169 TSTLMIPISEIVSLQG-NTF-FSINIW-WVITIVAFLVKMPIYGFHLWLPKAHVEAPVAG 225 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII--YASLVSMV----QT 297 S+ LA I+LK+GGYG IR + YF V +++ +I + +L++ + QT Sbjct: 226 SMILAAILLKLGGYGIIRM--------NAYFPDVTTLSAILTVICCWGALITSILCTRQT 277 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K LIAYSS+ HM V G + GA+ M++HGLVSSALF ++Y+R HTR Sbjct: 278 DLKALIAYSSVGHMSLVAAGTIVFSDWTISGAIMLMVAHGLVSSALFALANILYERTHTR 337 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +IF G ++ AN+GLP IGE +I + S +A + Sbjct: 338 NIFITRGFKMITVLLPFWWLISCAANLGLPPLPNLIGELYIITGIISWSIFLAPILGVAT 397 Query: 418 VLSALYSLWLYRK 430 V A+YSL +Y+ Sbjct: 398 VFGAIYSLLIYQN 410 >gi|295641099|gb|ADG22647.1| NADH dehydrogenase subunit 4 [Mustela nivalis] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/389 (33%), Positives = 209/389 (53%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P +++S + + + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSTPLLVLTTWLLPLMLMASQHHLSKETLTRKKLYITMLVMLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T +++ Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGMYFLFYTLVGSLPLLIALLWLQNNLGTLNLL 177 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 178 I----------IQYWAQPLPNSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL S Y A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRMTMLLNPLTS-YMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIMAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+M+ F SN +L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIILMGVNIIITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G ++ +K RE Sbjct: 407 SLYMLITTQRG-KYTHHIKNIKPSFTREN 434 >gi|327492971|ref|YP_004347923.1| NADH dehydrogenase subunit 4 [Torquigener pleurogramma] gi|327392472|dbj|BAK09908.1| NADH dehydrogenase subunit 4 [Torquigener pleurogramma] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 212/387 (54%), Gaps = 11/387 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L +++ ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLAQLELASYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILITLDPLTKELSYPFII-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMAAWWFISSLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRER 452 +++ G + + L+ RE Sbjct: 410 YMFLMTQRGPAP-NHLLALEPSHTREH 435 >gi|207559892|gb|ACI24493.1| NADH dehydrogenase subunit 4 [Capra sibirica] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 199/363 (54%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESPARKKLFISMLVLLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+ + I + Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVAL---------THIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 F +QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 TVGSLNF-LILQYWAQPMSNSWSNAFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ + Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMMRITLLLNPI-TDYMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|192293732|ref|YP_001994297.1| NADH dehydrogenase subunit 4 [Leptochilichthys agassizii] gi|190715152|dbj|BAG49393.1| NADH dehydrogenase subunit 4 [Leptochilichthys agassizii] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRMYISLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMTVMLDPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P AV ++AN+ LP +GE ++I ++F S L G +++A YSL+L Sbjct: 352 LFPLTAVWWFTASLANLALPPLPNLMGEIMIIATMFNWSPWTLALTGLGTLITAGYSLYL 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|300470661|dbj|BAJ11147.1| NADH dehydrogenase subunit-4 [Cobitis biwae] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NHYMATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRLYITLLVFLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QHS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLILQYSQPLTLHSWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF ++R H+ + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTAFERTHSGPMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+ Sbjct: 351 MIFPLAAAWWFIANLANLALPPLPNLMGELAIISTLFNWSPWTILLTGVGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMSQRGPTP-PHITGLPPFHTREHLLL 438 >gi|115494771|ref|YP_778847.1| NADH dehydrogenase subunit 4 [Cystophora cristata] gi|37620618|gb|AAQ95118.1| NADH dehydrogenase subunit 4 [Cystophora cristata] gi|115344993|emb|CAJ57036.1| NADH dehydrogenase subunit 4 [Cystophora cristata] Length = 459 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/381 (33%), Positives = 207/381 (54%), Gaps = 11/381 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P I++S + + + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMIMASQSHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P ++I WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 118 FYILFEATLVPTLIVITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLFIQNNMGTLNFL 177 Query: 196 DLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + ++ P S + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 MIQLWTQ-PLSSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITALLNPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQVLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILTGTNIIITALYSLYMLITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERC 453 G ++ +K RE Sbjct: 416 RG-KYTSHIKNIKPSFTRENT 435 >gi|28268820|gb|AAO37905.1|AF224574_4 NADH dehydrogenase subunit 4 [Hapalemur griseus griseus] Length = 458 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 202/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ +I F + +++ F Sbjct: 58 DSLSSPLVILTMWLLPLMIMASQHHLTKEPWTLKKLYLSMLISLQMFLIMTFTATELIYF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 118 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI---QNYLGSLN 174 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L MS + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 175 LSTMSLCFQELPNSWSNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 234 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 235 LKLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 293 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I G GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 294 ALVIVAILIQTPWGFMGATVLMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 353 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 354 MATWWLFASLTNLALPPSINLIGELLVIMASFSWSNITIILMGLNMLITALYSLYMLTTT 413 Query: 432 VFG 434 G Sbjct: 414 QRG 416 >gi|222837519|ref|YP_002586877.1| NADH dehydrogenase subunit 4 [Gyrinomimus myersi] gi|222051582|dbj|BAH15268.1| NADH dehydrogenase subunit 4 [Gyrinomimus myersi] Length = 460 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 206/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P I++S + E R Y+ L+ +I AF + Sbjct: 54 SLYMAADPLSAPLLVLTCWLLPLAIIASQNHMLEEPLTRQRTYISLLTFLQLFLILAFTA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TELIMFYIMFEATLIPTLVIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNDTG 173 Query: 191 TSSIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L ++ + W W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLPFSKTQQLGSYADKAW-WLGCLMAFLVKMPLYGMHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L II + + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRVMVMLEPLTKELSYPFIIF-ALWGIIMTASICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTSWGFTGALTLMIAHGLASSALFCLANTNYERTHSRTMILARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I ++F S ++ G V++A YSL+L Sbjct: 352 LLPLMTSWWFIASLANLALPPLPNLMGELMIISALFNWSPWSLLITGTGTVITASYSLYL 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|53686554|ref|YP_097280.1| NADH dehydrogenase subunit 4 [Bolitoglossa n. sp. RLM-2004] gi|51980075|gb|AAU20730.1| NADH dehydrogenase subunit 4 [Bolitoglossa n. sp. RLM-2004] Length = 458 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/373 (35%), Positives = 207/373 (55%), Gaps = 11/373 (2%) Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMI 116 SF ++ + + + +D IS L+VLT +L P IL+S +++N R Y+ Sbjct: 38 SFNLLLLPTELTMLANKYFSLDYISSPLLVLTCWLLPLMILASQGHLKKNPTNRQRMYLS 97 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGS 175 L+ +I AF S +++LFYI FE++LIP +II WG +ER+ A F YT GS Sbjct: 98 TLTFLQISLIMAFSSTELILFYITFESTLIPTLIIITRWGNQTERLNAGTYFLFYTLMGS 157 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWL 232 + +L A++ + ++ T S+ L +SK F +W +F +K+P++ H WL Sbjct: 158 LPLLVALLFLSYQTGTLSMTTL-PLSKELFLLTPTSKLLWFGCLMAFMVKMPLYGMHLWL 216 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P AHV+AP AGS+ LA I+LK+GGYG IR + PL + +I LS+ I+ LV Sbjct: 217 PKAHVEAPVAGSMILAAILLKLGGYGIIRISIMFTPLIELSYPFII--LSMWGILMTGLV 274 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + QTD+K LIAYSSI+HMG V + GA+ M+SHGL SSALF Y+ Sbjct: 275 CIRQTDLKSLIAYSSISHMGLVVAAALIQTPWSLSGAIILMISHGLTSSALFCLANTTYE 334 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R ++R + GL +P ++ ++ NM LP T GE +++MS+F S ++ Sbjct: 335 RTNSRTMLLARGLQIMLPLMTTWWLITSLTNMALPPTMNLWGELMILMSLFNWSVWTIIM 394 Query: 413 ASFGVVLSALYSL 425 G++++A Y+L Sbjct: 395 TGLGMLITATYTL 407 >gi|29570637|ref|NP_818796.1| NADH dehydrogenase subunit 4 [Apteronotus albifrons] gi|29501146|dbj|BAC67503.1| NADH dehydrogenase subunit 4 [Apteronotus albifrons] Length = 460 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 208/387 (53%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L++LT +L P IL+S + R ++ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLILTCWLLPMMILASQNHTRSEPLNRQRTFLTLLTSLQIFLIIAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +LLFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K T Sbjct: 116 ILLFYIAFEATLIPTLIIITRWGNQTERLDAGTYFLFYTLAGSLPLLVALLIL--QKTTG 173 Query: 193 S----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + I+ L +S WIA +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSLPILQLSNLSTLNTEGDKIWWIACLFAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRITIVLDPLTKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTTYERTHSRTMILARGMQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P V + +AN+ LP +GE +I ++F S +L G +++A YSL L+ Sbjct: 353 FPLATVWWFIANLANLALPPLPNLMGELTIISAMFNWSKWTIILTGAGTLITAAYSLHLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LTTQRGPTPPHML-NLQPSHTREHLLM 438 >gi|16357370|ref|NP_443680.1| NADH dehydrogenase subunit 4 [Dactyloptena peterseni] gi|16267279|dbj|BAB70400.1| NADH dehydrogenase subunit 4 [Dactyloptena peterseni] Length = 460 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 135/381 (35%), Positives = 205/381 (53%), Gaps = 9/381 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLDM 134 LG D +S L++LT +L P +L+S K + N + I+ L+ L+ +I AF + ++ Sbjct: 57 LGTDPLSTPLLILTCWLLPLMLLASQKHVNSEPINRQRTFISLLISLQVFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFY+ FEA++IP II WG ER+ A F YT GS+ +L A++V+ + S Sbjct: 117 ILFYVMFEATIIPTLFIITRWGSQKERLNAGTYFLFYTLVGSLPLLVALLVLQNNIGSLS 176 Query: 194 IIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++ + + S W A +F IK+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 177 LLTVQYSPLDSHHLSTNKLWWAACLMAFLIKLPLYGLHLWLPKAHVEAPIAGSMILAAVL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL + P I L+L ++ + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGMMRMTALLDPLTKELSYPFII-LALWGLVMTGAICLRQTDLKSLIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V GI G GAM M+SHGL SSALF Y+R H+R + GL +P Sbjct: 296 GLVAGGILIQTPWGFSGAMILMISHGLTSSALFCLANTNYERTHSRTMILARGLQMALPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ ++AN+ LP + E ++I ++F S V G +++A YSL+L+ Sbjct: 356 MTTWWLIASLANLALPPIPSSMAELMIITALFNWSQWTLVFTGLGTLITAGYSLYLFIMT 415 Query: 432 VFGVSKCEKVQQLKDLSLRER 452 G +Q L RE Sbjct: 416 QRG-PLPPHIQTLDPSHTREH 435 >gi|126215345|ref|YP_001054850.1| NADH dehydrogenase subunit 4 [Tropheus duboisi] gi|126143574|dbj|BAF47311.1| NADH dehydrogenase subunit 4 [Tropheus duboisi] Length = 460 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAF 129 F S ++ D +S L+ LT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLALTCWLLPLMILASQNHTASEPSSRQRTYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEVIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L ++ F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYAPSLQLSSFADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMTAWWFITSLANLALPPLPNLMGELMIIASLFHWSWWTIALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|24817437|gb|AAN64772.1|AF224579_4 NADH dehydrogenase subunit 4 [Hapalemur griseus occidentalis] Length = 458 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 202/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ ++I F + +++ F Sbjct: 59 DSLSSPLVILTMWLLPLMIMASQHHLTKEPWTLKKLYLSMLISLQMLLIMTFTATELIYF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI---QNYLGSLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L MS + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 LSTMSLCFQELPNSWSNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPM-TKYLAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLFASLTNLALPPSINLIGELLVIMASFSWSNITIILMGLNMLITALYSLYMLTTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|24817471|gb|AAN64796.1|AF224586_4 NADH dehydrogenase subunit 4 [Varecia variegata variegata] Length = 459 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 204/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P IL+S + +E++ + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSSPLMMLTMWLLPLMILASQHHLAKESWTLKKSYLSMLIFLQMLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + E + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSMPLLVALIYL--ENYSGSLNL 176 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L F W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LMTNLCFQELPNSWSNNLLWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL +++ A F L L +I AS + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITVILDPL-TKFMAYPFFMLCLWGMIMASSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 296 LVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 + ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 356 STWWLLASLTNLALPPSINLIGELFVTMTSFSWSNITIILMGLNMLITALYSLYM 410 >gi|269302351|gb|ACZ29025.1| NADH dehydrogenase subunit 4 [Mustela nivalis] Length = 459 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/388 (33%), Positives = 209/388 (53%), Gaps = 29/388 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ +I F + ++++F Sbjct: 59 DSLSTPLLVLTTWLLPLMLMASQHHLSKETLTRKKLYITMLVMLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T +++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGMYFLFYTLVGSLPLLIALLWLQNNLGTLNLLI 178 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 179 ----------IQYWAQPLPNSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL S Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITMLLNPLTS-YMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIMAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T +GE V+M+ F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIILMGVNIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KYTHHIKNIKPSFTREN 434 >gi|12248174|ref|NP_073660.1| NADH dehydrogenase subunit 4 [Diplophos taenia] gi|12082048|dbj|BAB20729.1| NADH dehydrogenase subunit 4 [Diplophos taenia] Length = 460 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 138/398 (34%), Positives = 213/398 (53%), Gaps = 17/398 (4%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSL 132 Y+L D +S L+VL+ +L P IL+S + R Y+ + L++++I AF + Sbjct: 55 YYLAFDPLSAPLLVLSCWLLPLMILASQNHVCPEPTGRQRVYISLLVSLQALLILAFGAT 114 Query: 133 DMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT 191 + ++FY+ FEA+LIP II WG +ER+ A F YT GS+ +L +++++ +K T Sbjct: 115 ETIMFYVMFEATLIPTLFIITRWGNQAERLNAGVYFLFYTLAGSLPLLVSLLLL--QKDT 172 Query: 192 SSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 GTLSLLTLQYSPPLQLSTWGSKLWWAGCLLAFLVKMPLYGTHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMPMLDPLTKNLAYPFIA-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVAGGILIQTPWGISGAIILMIAHGLASSALFCLANTNYERTHSRTMLLMRGMQA 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE L+I S+F S VL G +++A YSL L Sbjct: 352 VLPLMTAWWFIASLANLALPPLPNLMGELLIISSMFNWSYWTLVLTGAGTLITAAYSLHL 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV----YPIAVL 461 + G L+ RE ++ PIA+L Sbjct: 412 FLTTQRGPLP-RHATSLEPSHTREHLLIALHLLPIALL 448 >gi|157738555|ref|YP_001491379.1| NADH dehydrogenase subunit 4 [Triacanthus biaculeatus] gi|139000741|dbj|BAF51903.1| NADH dehydrogenase subunit 4 [Triacanthus biaculeatus] Length = 460 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 204/369 (55%), Gaps = 10/369 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S L D +S L++LT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPFLATDPLSAPLLILTCWLLPLMILASQNHTSPEPVARQRVYITLLTSLQISLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +++LFYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEVILFYIMFETTLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQKN 171 Query: 189 KKTSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L ++ ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 VGTLSLLTLQYLAPLHLVSYADKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I F ++ +I L+ + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMLILLEPLTKELSYPFIVF-AMWGVIMTGLICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P ++AN+ LP +GE ++I+S+F S +L G +++A YSL Sbjct: 350 QTALPLMGTWWFFASLANLALPPLPNLMGELMIIVSLFNWSWWTLILTGAGTLITAGYSL 409 Query: 426 WLYRKVVFG 434 +++ G Sbjct: 410 YMFLTTQRG 418 >gi|77020106|ref|YP_337901.1| NADH dehydrogenase subunit 4 [Andrias japonicus] gi|76559853|dbj|BAE45328.1| NADH dehydrogenase subunit 4 [Andrias japonicus] Length = 458 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 200/358 (55%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDM 134 +G+D +S L++LT +L P I++S ++ R YMI ++L++ +I AF + + Sbjct: 56 MGLDQLSSPLMILTCWLLPLMIMASQNHLKNTTLNWQRTYMIMLIILQASLILAFSATEF 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++VM + S Sbjct: 116 MLFYISFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSMPLLIALLVMQNSLTSLS 175 Query: 194 IIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 I L M ++ Y W W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 FIILDLMPPMVLTLYYNKIW-WAACLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMILAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L + + P I L+L ++ L+ QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGILRVSMMLSQASEELSYPFII-LALWGVVMTGLICTRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GA+ M+SHGL SS LF + Y+R H+R + G +P Sbjct: 294 MGLVIAAAMIQTPWSYAGAIALMISHGLTSSVLFCLANLNYERHHSRTLLLMRGSQTVLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 ++ + NM +P ++ GE L+I S+F S ++ V++A+Y+L++Y Sbjct: 354 LMMTWWLLSNLLNMAIPPSTNMWGELLIITSLFNWSGYTILITGISTVITAVYTLYIY 411 >gi|153124665|ref|YP_001382268.1| NADH dehydrogenase subunit 4 [Gulo gulo] gi|151416758|emb|CAM98633.1| NADH4 protein [Gulo gulo] Length = 459 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/389 (32%), Positives = 205/389 (52%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L++L T+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLMLMTWLLPLMLMASQYHLSKETLTRKKLYITMLVLLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ W + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALL---WVQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NL-------LVIQYWAPPLLDSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL + + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITDLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+M+ F SN +L + ++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIILMGINITITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G ++ +K RE Sbjct: 407 SLYMLITTQRG-KYTHHIKNVKPSFTREN 434 >gi|222051554|dbj|BAH15242.1| NADH dehydrogenase subunit 4 [Cetostoma regani] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/357 (36%), Positives = 202/357 (56%), Gaps = 10/357 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDML 135 D +S L++L+ +L P IL+S + R Y+ +L++ +I AF + +++ Sbjct: 58 ATDPLSTPLLILSCWLLPLMILASQNHMFAEPLNRQRMYISLLTLLQAFLIMAFSATELI 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S+ Sbjct: 118 MFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNDAGTLSM 177 Query: 195 IDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + L FS + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 178 LTLQYSEPLQFSSYTNKIW-WVGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGMMRMMIMLEPLTMELCYPFIIF-ALWGIIMTGSICLRQTDLKSLIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V GI G GAM M++HGL SSALF Y+R H+R + GL P Sbjct: 296 GLVVGGILIQTSWGFAGAMTLMIAHGLASSALFCLANTNYERTHSRTMLLTRGLQMVFPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S ++ G +++A YSL+++ Sbjct: 356 MTTWWFIASLANLALPPLPNLMGELMIISSLFNWSEWSLLITGLGTMITAGYSLYMF 412 >gi|208433797|ref|YP_002265532.1| NADH dehydrogenase subunit 4 [Aluterus scriptus] gi|207367027|dbj|BAG72004.1| NADH dehydrogenase subunit 4 [Aluterus scriptus] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 205/362 (56%), Gaps = 10/362 (2%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFL 130 +Y+L D +S L+VL+ +L P IL+S + EN + I+ L L+ +I AF Sbjct: 53 ANYYLATDALSTPLLVLSCWLLPLMILASQNHVAPEPENRQRLYISLLTSLQIFLIMAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ Sbjct: 113 ATEVMMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALSLLYAST 172 Query: 190 KTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ L + + ++W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 GTLSLLILQFSEPLHLTGLADKFW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMLIILDPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + ++AN+ LP +GE ++I S+ S L G +++A YSL+ Sbjct: 351 TILPLMATWWFISSLANLALPPLPNLMGELMIITSLLNWSWWTIALTGLGTLITAGYSLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|110432845|gb|ABG74096.1| NADH dehydrogenase subunit 4 [Lepilemur seali] gi|209447657|gb|ACI47124.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|209447662|gb|ACI47128.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|209447667|gb|ACI47132.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|209447672|gb|ACI47136.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|209447677|gb|ACI47140.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/360 (35%), Positives = 207/360 (57%), Gaps = 8/360 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S K E + ++ + L+ +I F + +++LF Sbjct: 59 DPLSSPLLILTTWLFPLTVMASQYHLTKESWERKKHFLSTLISLQLFLIMTFAATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + T S++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALSHIQNSMGTLSLLM 178 Query: 197 L-YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + Y + + P S Y +W A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 MTYWLQELPNSWSNYLLWTACIMAFMVKMPLYGLHMWLPKAHVEAPIAGSMVLAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R ++ L PL +++ A + L +I SL+ + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRIIMILNPL-TKFMAYPFLMMCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I + GA M++HGL SS LF Y+R+H+R + GL +P + Sbjct: 298 IMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERIHSRTMLLARGLQALLPLMST 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ +++N+ LP + IGE LV M+ F SNT +L ++++A YSL++ G Sbjct: 358 WWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLITATYSLYMLTTTQRG 417 >gi|16357104|ref|NP_443472.1| NADH dehydrogenase subunit 4 [Ateleopus japonicus] gi|16266798|dbj|BAB69997.1| NADH dehydrogenase subunit 4 [Ateleopus japonicus] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/360 (35%), Positives = 202/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L++LT +L P I++S K R Y+ + L+ +I AF + + Sbjct: 56 YMATDSLSTPLLILTCWLLPLMIMASQKHTYNEPMNRQRAYLSLLVSLQVFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L +++++ + Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVSLLML--QNNLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMLTLAYSQPLTLISWGDKIWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQTV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + ++AN+ LP +GE ++I S++ S +L G +++A YSL+++ Sbjct: 353 LPLMTAWWFISSLANLALPPLPNLMGELMIITSLYNWSYWSIILTGMGTLITAAYSLYMF 412 >gi|16356977|ref|NP_443628.1|ND4_15838 NADH dehydrogenase subunit 4 [Zeus faber] gi|16267191|dbj|BAB70322.1| NADH dehydrogenase subunit 4 [Zeus faber] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 138/384 (35%), Positives = 209/384 (54%), Gaps = 15/384 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 +G D +S L++LT +L P IL+S + R Y+ L+ +I AF + ++ Sbjct: 57 MGTDPLSTPLLILTCWLLPLMILASQNHMAPEPLSRQRTYISLLSSLQVFLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FYI FEA+LIP +II WG ER+ A F YT GS+ +L A++++ T S Sbjct: 117 LMFYIMFEATLIPTLIIITRWGNQKERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLS 176 Query: 194 II-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ DL + + S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 MLITPYNDLTLTTSW--SHKLW-WAGCMIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRIMVTLDPLSKEMLFPFII-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 MP A ++AN+ LP +GE ++I S+F S +L G +++A YSL+L+ Sbjct: 353 MPLMASWWFTASLANLALPPLPNLMGEIMIISSLFNWSWFTIILTGAGTLITAGYSLYLF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRER 452 G + + L RE Sbjct: 413 LMTQRG-PLPQHITALSPSHTREH 435 >gi|209427668|ref|YP_002274298.1| NADH dehydrogenase subunit 4 [Lutra lutra] gi|209361430|gb|ACI43344.1| NADH dehydrogenase subunit 4 [Lutra lutra] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/389 (33%), Positives = 207/389 (53%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 VD +S L++LTT+L P +++S + + + Y+ + L+ ++I F + ++++ Sbjct: 58 VDSLSTPLLMLTTWLLPLMLMASQHHLSKETLTRKKLYITMLVTLQLLLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLW---LQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NLLV-------IQYWAQPLPNSWSNMLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL + P LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITVLLNPLTNHMAYP-FMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIMAVLIQSPWSYAGATALMVAHGLTSSLLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+MS F SN +L + ++ALY Sbjct: 347 GLQMLLPLMATWWLLASLTNLALPPTINLVGELFVVMSSFSWSNITIILMGVNITITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G ++ +K RE Sbjct: 407 SLYMLITTQRG-KLTHHIKNIKPSFTREN 434 >gi|115494813|ref|YP_778795.1| NADH dehydrogenase subunit 4 [Lobodon carcinophaga] gi|37620600|gb|AAQ95109.1| NADH dehydrogenase subunit 4 [Lobodon carcinophaga] gi|115344937|emb|CAJ56984.1| NADH dehydrogenase subunit 4 [Lobodon carcinophaga] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/382 (33%), Positives = 206/382 (53%), Gaps = 9/382 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLSLTTWLLPLMLMASQFHLSKESLTRKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGMYFLFYTLVGSLPLLVALLFIQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++ L+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 178 MLQLWTQPMLNSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + L PL + P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITMLLNPLTNSMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 297 VIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQVLLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 357 AWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYSLYMLITTQR 416 Query: 434 GVSKCEKVQQLKDLSLRERCMV 455 G ++ +K RE ++ Sbjct: 417 G-KYTHHIKNIKPSFTRENALM 437 >gi|219560225|gb|ACL27349.1| NADH dehydrogenase subunit 4 [Tursiops truncatus] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 207/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L+ ++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLVMLQVLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI EA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YIMXEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGMNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|260150995|ref|YP_003208310.1| NADH dehydrogenase subunit 4 [Mesocricetus auratus] gi|186694660|gb|ACC86269.1| NADH dehydrogenase subunit 4 [Mesocricetus auratus] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 205/358 (57%), Gaps = 14/358 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDML 135 +D +S L LT +L P +L+S K I++ N + Y+ + L+ ++I F + +++ Sbjct: 57 SMDSLSSPLTALTIWLLPLMLLASQKHIKKETVLNKKLYISMLVTLQILLIMTFSANELI 116 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + +K+ Sbjct: 117 MFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSIPLLIALISI---QKSLGT 173 Query: 195 IDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 +++ +S ++ Y +W+A +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 LNILLLSLNTSTLDNNWSNYILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG +R + L P+ P I LSL ++ S + + QTD+K LIAYSS++ Sbjct: 234 ILLKLGGYGMMRVSIILDPMTETMAYPFIL-LSLWGMLMTSSICLRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HM V I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 293 HMALVIAAIMIQTPWSFMGASALMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQTAF 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A + + ++AN+ LP + IGE L+ +++F S+ +L ++++ALYSL++ Sbjct: 353 PLMATLWFLGSLANLALPPSINLIGELLITITLFSWSHLSIILVGTNILITALYSLYM 410 >gi|108767264|ref|YP_636105.1| NADH dehydrogenase subunit 4 [Scomberomorus cavalla] gi|105873635|gb|ABF74861.1| NADH dehydrogenase subunit 4 [Scomberomorus cavalla] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTALEPVNRQRMYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSTPLQLISYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S+ L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSHWTLALTGAGTLITAGYSLYMF 412 >gi|148922624|ref|YP_001293797.1| NADH dehydrogenase subunit 4 [Sardinella maderensis] gi|148762670|dbj|BAF64110.1| NADH dehydrogenase subunit 4 [Sardinella maderensis] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSSPLLVLTCWLLPLMILASQNHTRTEPISRQRMYISLLASLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLQSSTGTL 175 Query: 193 SIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L ++ + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMITLNFGQPLTLVSWGDKIW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRMTSILDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S VL G +++A YSL+++ Sbjct: 354 PLTATWWFIANLANLALPPLPNLMGEVMIITTMFNWSPWTLVLTGLGTLITAGYSLYMF 412 >gi|150378423|ref|YP_001315081.1| NADH dehydrogenase subunit 4 [Camelus ferus] gi|122003962|gb|ABM65796.1| NADH dehydrogenase subunit 4 [Camelus ferus] gi|134302888|gb|ABO70704.1| NADH dehydrogenase subunit 4 [Camelus ferus] gi|134302902|gb|ABO70717.1| NADH dehydrogenase subunit 4 [Camelus ferus] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/391 (33%), Positives = 213/391 (54%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DALSAPLLVLTTWLLPLMLIASQSHLSKEPLTRKKVYITMLILLQVLLIMTFTASELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 Y+ FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T+ ++ Sbjct: 119 YVLFEATLVPTLIIITRWGSQAERLNAGSYFLFYTLSGSLPLLVALVYI---QNTTGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 M QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 FLIM-------QYWNQPLMDSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL ++Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRLTTMLNPL-TEYMAYPFLMLSLWGMIMTSSICLRQTDLKALIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATTLMVAHGLTSSMLFCLANTNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A+ ++ ++AN+ LP T +GE V+MS F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAMWWLLASLANLALPPTINLLGELFVVMSAFSWSNITIILMGANMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLIMTQRG-KHTHHINNIKPTYTRENTLM 437 >gi|32453803|ref|NP_861585.1| NADH dehydrogenase subunit 4 [Andrias davidianus] gi|32329434|emb|CAD37343.1| NADH dehydrogenase subunit 4 [Andrias davidianus] Length = 458 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 201/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDM 134 +G+D +S L++LT +L P I++S ++ R YMI ++L++ +I AF + + Sbjct: 56 MGLDQLSSPLMILTCWLLPLMIMASQNHLKNTTLSWQRTYMIMLIILQASLILAFSATEF 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A+++M + S Sbjct: 116 MLFYISFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSMPLLIALLIMQNSLTSLS 175 Query: 194 IIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 I L M ++ Y W W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 FIILDLMPPMMLTLYYNKIW-WAACLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMILAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L + + P I L+L ++ L+ QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGILRVSMMLSQASEELSYPFII-LALWGVMMTGLICTRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GA+ M+SHGL SS LF + Y+R H+R + G +P Sbjct: 294 MGLVIAAAMIQTPWSYAGAITLMISHGLTSSVLFCLANLNYERTHSRTLLLMRGSQTILP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 ++ + NM +P ++ GE L+I S+F S+ ++ V++A+Y+L++Y Sbjct: 354 LMMTWWLLSNLLNMAIPPSTNMWGELLIITSLFNWSSYTILITGISTVITAVYTLYIY 411 >gi|212725616|ref|YP_002317359.1| NADH dehydrogenase subunit 4 [Apeltes quadracus] gi|212374505|dbj|BAG83075.1| NADH dehydrogenase subunit 4 [Apeltes quadracus] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 200/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P I++S R Y+ L+ +I AF + + Sbjct: 56 YLATDSLSTPLLVLTCWLLPLMIIASQNHTATEPLNRQRVYITLLTSLQIFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L +++++ + T Sbjct: 116 IIMFYVMFEATLIPTLVIITRWGNQTERLNAGLYFLFYTLAGSLPLLVSLLLLQNTEGTL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L F F+ + W W + F +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSDPFQLTTFADKLW-WASCFLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR ++ L PL P I F +L ++ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRMIVMLDPLTKDLGYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V I + GA+ M++HGL SSALF Y+R H R + GL + Sbjct: 294 HMGLVVAAILIQTPWSLSGALTLMIAHGLASSALFCLANTNYERTHNRTLLLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P V ++AN+GLP +GE L+I S+F S L G +++ YSL+++ Sbjct: 354 PLMTTWWFVASLANLGLPPLPNLMGELLIITSLFNWSWWTITLTGAGTLITVSYSLYMF 412 >gi|270267416|ref|YP_003331116.1| NADH dehydrogenase subunit 4 [Talismania bifurcata] gi|269994330|dbj|BAI50321.1| NADH dehydrogenase subunit 4 [Talismania bifurcata] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 134/389 (34%), Positives = 208/389 (53%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S + R Y+ + L++ +I AF + Sbjct: 54 SPYLATDPLSTPLLVLTCWLLPLMILASQNHVSPEPISRQRTYLSLLVSLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QND 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P S+ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLTLQYSQPLSLLSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRIMIILDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P V +AN+ LP +GE ++I ++F S G +++A YSL+ Sbjct: 351 MLFPLTTVWWFTANLANLALPPLPNLMGEIMIITTMFNWSPWTLAFTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLMTQRGPAPAHMI-GLTPYHTREHLLM 438 >gi|42717969|ref|NP_976096.1| NADH dehydrogenase subunit 4 [Rhinolophus monoceros] gi|15420939|gb|AAK97516.1|AF406806_9 NADH dehydrogenase subunit 4 [Rhinolophus monoceros] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/355 (35%), Positives = 203/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENFRE---YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S + E+ + +M ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLMLTTWLLPLMLIASQHHLANESLNQKKLFMTMLILLQVFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLLPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI--QNITGTLNF 176 Query: 195 -IDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + Y + P ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LLSTYWLQPLSPSWSNAFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P+ + + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITMLLNPI-TDFMAYPFLILSLWGMIMTSSICLRQTDVKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP T IGE V+MS F S+ +L +V++ALYSL++ Sbjct: 356 TAWWLLASLTNLALPPTINLIGELFVVMSTFSWSSMSIILMGTNIVITALYSLYM 410 >gi|77020051|ref|YP_337833.1| NADH dehydrogenase subunit 4 [Pantholops hodgsonii] gi|74419066|gb|ABA03266.1| NADH dehydrogenase subunit 4 [Pantholops hodgsonii] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 203/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ L+L + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFISMLILLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIHI--QNTIGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPMPNSWSSTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITLLLNPV-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+MS F S +L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVMSTFSWSTITIILMGLNMVITALYSLYM 410 >gi|28882007|ref|NP_795816.1| NADH dehydrogenase subunit 4 [Platytroctes apus] gi|28804936|dbj|BAC58221.1| NADH dehydrogenase subunit 4 [Platytroctes apus] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 136/385 (35%), Positives = 211/385 (54%), Gaps = 18/385 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQSHISPEPISRQRMYVSLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L YA +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLQYAQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P V +AN+ LP +GE ++I ++F S L G +++A YSL+L Sbjct: 352 LFPLTTVWWFTANLANLALPPLPNLMGEIMIITTMFNWSPWTLALTGLGTLITAGYSLYL 411 Query: 428 YRKV--------VFGVSKCEKVQQL 444 + + G++ C + L Sbjct: 412 FLMTQRGPAPAHMIGLTPCHTREHL 436 >gi|226462725|ref|YP_002727906.1| NADH dehydrogenase subunit 4 [Chamaeleo africanus] gi|124055144|gb|ABM89756.1| NADH dehydrogenase subunit 4 [Chamaeleo africanus] Length = 450 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/380 (33%), Positives = 211/380 (55%), Gaps = 14/380 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L +D IS L+ L+ +L P IL+S ++ R +++ L++++ A S + Sbjct: 55 YLSIDQISAPLLTLSYWLLPIAILASQNHLKYTTLTQTRMFLMCLTTLQTLLTLALSSTN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LF+I FEA+LIP +II WG ER+ A F YT S+ +L A+++M ++ Sbjct: 115 IILFFIMFEATLIPTMMIITRWGSQKERLTAGMYFMFYTLISSMPLLIALLMMNYQMDNL 174 Query: 193 SIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + L M+ F P +I W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 175 NTM-LTPMTTFKPNTIT---WLACTLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAIL 230 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + P+ L + P I ++L +I SL+ + Q D+K LIAYSS++HM Sbjct: 231 LKLGGYGMMR-ISPMLCLTKTLYYPFII-MALWGMIMTSLICLRQPDLKSLIAYSSVSHM 288 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V S + GAM M++HG+ SS LF ++Y+R HTR + G+ +P Sbjct: 289 GLVVTATLIQTPSSLNGAMILMVAHGITSSMLFCLANMMYERTHTRTLAMMQGIQTTLPL 348 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ +ANM +P T +GE + ++F S +L ++A+YS++++ + Sbjct: 349 MTAFWLIANLANMAIPPTINLMGEITITTTMFNWSPPTLILTGSATTITAIYSMYMFSTI 408 Query: 432 VFGVSKCEKVQQLKDLSLRE 451 G K +K + RE Sbjct: 409 QQG--KTQKDMMISPPQTRE 426 >gi|45685262|gb|AAS75389.1| NADH dehydrogenase subunit 4 [Acanthogobius hasta] Length = 477 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 135/379 (35%), Positives = 205/379 (54%), Gaps = 17/379 (4%) Query: 65 IEYYHWIDYFC-------SYHLGVDGISILLVVLTTFLTPFCILSSWKS-IQENF---RE 113 + + W+ C + + +D +S L+VLT +L P IL+S I E R Sbjct: 36 VTSFSWLSNPCDTGWSLMNQSMALDPLSTPLLVLTCWLLPLMILASQHHMIHEPINRQRT 95 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 ++ L+ +I AF + +++ FYI FEA+L+P ++I WG +ER+ A F YT Sbjct: 96 FITILTTLQVFLILAFSATELIFFYIMFEATLVPTLILITRWGNQAERLNAGTYFLFYTP 155 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFH 229 GS+ +L A++++ T S+ L+ + P + + W W +F +K+P++ H Sbjct: 156 AGSLPLLIALLLLQNTTGTLSLFILHYTTTLPMISIADKLW-WAGCLVAFLVKMPLYGMH 214 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 WLP AHV+AP AGS+ LA I+LK GGYG +R + L PL Q P I L+L +I Sbjct: 215 LWLPKAHVEAPIAGSMILAAILLKTGGYGMMRVMTLLEPLTPQLSYPFII-LALWGVIMT 273 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 + + QTD+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Sbjct: 274 GSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFSGALILMIAHGLTSSALFCLANT 333 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 Y+R HTR + GL +P A ++AN+ LP +GE ++I SVF S Sbjct: 334 NYERTHTRTMVLARGLQMALPLMAAWWFTASLANLALPPLPNLMGELMIITSVFNWSWAT 393 Query: 410 AVLASFGVVLSALYSLWLY 428 L G +++A YSL+++ Sbjct: 394 IALTGAGTLITAGYSLYMF 412 >gi|238866872|ref|YP_002929344.1| NADH dehydrogenase subunit 4 [Perodicticus potto] gi|238809407|dbj|BAH69230.1| NADH dehydrogenase subunit 4 [Perodicticus potto] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 206/387 (53%), Gaps = 20/387 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LTT+L P I++S + + + Y+ + L+ +I F + +++LF Sbjct: 58 DTLSTPLVMLTTWLLPLMIMASQHHLHKESLTRKKTYISMLISLQLTLIMMFSASELILF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FE +LIP +II WG +ER+ A F YT GS+ +L ++ M + S Sbjct: 118 YILFETTLIPTLIIITRWGNQTERLNAGLYFLFYTLLGSLPLLVVLIHM--QNSLGSLNF 175 Query: 194 -IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 I+ LY + S W MW+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 NILSLYTQNTTTCS---WSDDLMWMACMMAFLVKMPLYGTHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LKMGGYG +R L PL P + LSL +I S + + QTD+K L+AYSS+ Sbjct: 233 AVLLKMGGYGMMRMTSLLNPLTYDMAYPFLT-LSLWGMIMTSSICLRQTDLKSLVAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V I GA M++HGL SS LF Y+R+H R + GL Sbjct: 292 SHMALVITAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMILARGLQTI 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A+ ++ ++ N+ LP + IGE L+++S F SN +L +++ALYSL ++ Sbjct: 352 LPLMAIWWLLASLTNLALPPSINLIGELLILISTFSWSNLSILLTGLNTLITALYSLHMF 411 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +K RE ++ Sbjct: 412 ISTQRG-NLAHHISNIKPSFTRENTLM 437 >gi|207559920|gb|ACI24519.1| NADH dehydrogenase subunit 4 [Hemitragus jemlahicus] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 199/363 (54%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ L L + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESPTRKKLFISMLALLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIHI---QNTVGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 FLV-------LQYWAQPMPNSWSNVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P + Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMMRITLLLNP-TTDYMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSSI+HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSISHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|21492454|ref|NP_659334.1| NADH dehydrogenase subunit 4 [Lepus europaeus] gi|21425403|emb|CAD13290.1| NADH dehydrogenase subunit 4 [Lepus europaeus] Length = 458 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 200/362 (55%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P IL+S + + + Y+ + L+ ++ F + +++LF Sbjct: 59 DALSTPLLMLTVWLLPLMILASQHHLSKESLLRKKTYISLLISLQIFLVMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLMGSLPLLVALIHL--QNSMGSLNF 176 Query: 195 --IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I L S MW+A +F +K+P++ WLP AHV+AP AGS+ LA ++L Sbjct: 177 LLIQLSNESLLTSWSNSLMWLACMMAFLVKMPLYGLLLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRVTILLNPI-TEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSFMGATALMIAHGLTSSLLFCLANSNYERVHSRTMLLARGLQTVLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP T +GE L++M+ F SN +L V+++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLLGELLIVMASFSWSNLTIILMGTNVLITALYSLYMLSTTQ 415 Query: 433 FG 434 G Sbjct: 416 RG 417 >gi|192293774|ref|YP_001994336.1| NADH dehydrogenase subunit 4 [Normichthys operosus] gi|190715194|dbj|BAG49432.1| NADH dehydrogenase subunit 4 [Normichthys operosus] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 138/388 (35%), Positives = 210/388 (54%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NLYLATDPLSAPLLVLTCWLLPLMILASQNHISPEPISRQRMYISLLTSLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLQYSQPLSLFSWGDKIW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPLAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II V + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLDPLTKEMAYPFIV-LALWGIIMTGSVCLRQTDLKLLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R HTR + GL Sbjct: 292 VGHMGLVAGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTSYERTHTRTMALARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P V +AN+ LP +GE ++I ++F S L G++++A YSL+L Sbjct: 352 LFPLTTVWWFTANLANLALPPLPNLMGEIMIISTMFNWSPWTLALTGIGMLITAGYSLYL 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + + L RE ++ Sbjct: 412 FLMTQRGPAPAHMI-GLTPYHTREHLLM 438 >gi|55583436|ref|YP_138275.1| NADH dehydrogenase subunit 4 [Hyla chinensis] gi|46981617|gb|AAT07869.1| NADH dehydrogenase subunit 4 [Hyla chinensis] Length = 454 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 199/355 (56%), Gaps = 8/355 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLL 136 +D IS L++LT +LT +L+S + + R Y+ +VL+ + AFL+ +MLL Sbjct: 57 IDQISSPLLILTCWLTAPTLLASQSKLSKEPISRQRAYIFTIIVLQITTLLAFLADNMLL 116 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 F+I FE+++IP +II WG ER+ A YT FGS+ +L A++ T SI Sbjct: 117 FFILFESTMIPTLIIITRWGAQKERMLAGTYLLFYTLFGSMALLTALLFFHETFGTLSIS 176 Query: 196 DLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + SK P + W A F +F +K+P++ H WLP AHV+AP AGS+ LAG +LK Sbjct: 177 LIKESSKELHPSACMLAWWTACFTAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAGTLLK 236 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + Q AP+I F S+ ++ ++ + QTD+K LIA+SS++HMG Sbjct: 237 LGGYGILRINAIINDSFLQTAAPLIIF-SMFGVLLSAALCSRQTDLKSLIAFSSVSHMGL 295 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + G++ M+SHGLVSSALF Y+R HTR + G +P A Sbjct: 296 VIAASLLKTDWSIAGSLILMISHGLVSSALFCLANTSYERTHTRTLVVLQGSQIILPLSA 355 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 ++ + NM LP + FIGE ++ S+FQ SN ++ ++ + YSL+++ Sbjct: 356 AWWLMAALLNMALPPSPNFIGEMSILSSLFQWSNFTLIIMGISILFTTSYSLYMF 410 >gi|89257312|ref|YP_514745.1| NADH dehydrogenase subunit 4 [Parakneria cameronensis] gi|88759310|dbj|BAE79990.1| NADH dehydrogenase subunit 4 [Parakneria cameronensis] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 138/390 (35%), Positives = 211/390 (54%), Gaps = 13/390 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 +Y++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF Sbjct: 53 ANYYMATDPLSTPLLVLTCWLLPMMILASQNHMNSEPISRQRLYISLLTSLQLFLIMAFS 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++ +FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ E Sbjct: 113 ATEIFMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQTET 172 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L SK P S+ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 GTLSMLTL-QFSK-PLSLCSWSSKIWWAGCMIAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R + L P + P I L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMSIILDPATKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGAIALMIAHGLASSALFCLANTSYERTHSRTLMLTRGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + +AN+ LP +GE ++I ++F S VL G +++A YSL Sbjct: 350 QMILPLSATWWFLMNLANLALPPLPNLMGELVIITAMFNWSPWTIVLTGAGTLITACYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +L+ G + + L RE ++ Sbjct: 410 YLFLMSQRGPTPTHMI-NLPPSHTREHLLM 438 >gi|110432835|gb|ABG74088.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 212/384 (55%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P +++S K E + ++ + L+ +++ F + ++++F Sbjct: 59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP VII WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVAL---SYIQSSMGTLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ +++N+ LP + IGE LV M+ F SNT +L ++++A YSL++ Sbjct: 355 MSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S +Q RE ++ Sbjct: 415 QRGKSPYH-MQNFSPSLTRENTLM 437 >gi|108561426|ref|YP_626724.1| NADH dehydrogenase subunit 4 [Canis latrans] gi|91702685|gb|ABE48242.1| NADH dehydrogenase subunit 4 [Canis latrans] gi|91702699|gb|ABE48255.1| NADH dehydrogenase subunit 4 [Canis latrans] gi|91702713|gb|ABE48268.1| NADH dehydrogenase subunit 4 [Canis latrans] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 204/389 (52%), Gaps = 29/389 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLY---------IHN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L F IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 LMGSLNF-LMIQYWTQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+M+ F SN +L + ++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGINITITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KYSHHIKNIKPSFTRENA 435 >gi|40804688|ref|NP_955714.1| NADH dehydrogenase subunit 4 [Thunnus alalunga] gi|115531605|ref|YP_784187.1| NADH dehydrogenase subunit 4 [Thunnus orientalis] gi|295065604|ref|YP_003587404.1| NADH dehydrogenase subunit 4 [Thunnus thynnus] gi|32351891|dbj|BAC78539.1| ND4 [Thunnus thynnus thynnus] gi|40645314|dbj|BAD06501.1| NADH dehydrogenase subunit 4 [Thunnus alalunga] gi|115391870|dbj|BAF33358.1| NADH dehydrogenase subunit 4 [Thunnus orientalis] gi|268619084|gb|ACZ13321.1| NADH dehydrogenase subunit 4 [Thunnus obesus] gi|281428556|gb|ADA69818.1| NADH dehydrogenase subunit 4 [Thunnus thynnus] gi|281428584|gb|ADA69844.1| NADH dehydrogenase subunit 4 [Thunnus orientalis] gi|281428612|gb|ADA69870.1| NADH dehydrogenase subunit 4 [Thunnus alalunga] gi|290790501|gb|ADD62716.1| NADH dehydrogenase subunit 4 [Thunnus tonggol] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 207/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S + QE R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTAQEPINRQRMYITLLTSLQFFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L YA + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYAPPLQLMSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S+ L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGEIMILTSLFNWSHWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|295293600|gb|ADF88139.1| NADH dehydrogenase subunit 4 [Pan troglodytes troglodytes] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 137/402 (34%), Positives = 219/402 (54%), Gaps = 17/402 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LT +L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSLPFSSDPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ Sbjct: 112 ATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTL 171 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + +I+ L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 GSLNIL-LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSM 229 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL P + LSL +I S + + QTD+K LIAY Sbjct: 230 VLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HM V I GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 289 SSVSHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGL 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL Sbjct: 349 QTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSL 408 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +++ +G S + +K RE + + PI +L++ Sbjct: 409 YMFTTTQWG-SLTHHINSMKPSFTRENTLXFLHLSPILLLSL 449 >gi|326370314|gb|ADZ56150.1| NADH dehydrogenase subunit 4 [Globicephala macrorhynchus] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 208/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L++++I F + ++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQFHLLKEPLARKKLYITMLIMLQTLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YITFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALMYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGMNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|295442692|ref|YP_003595301.1| NADH dehydrogenase subunit 4 [Thunnus maccoyii] gi|294847931|gb|ADF43954.1| NADH dehydrogenase subunit 4 [Thunnus maccoyii] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 207/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S + QE R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTAQEPINRQRMYITLLTSLQFFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L YA + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYAPPLQLMSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S+ L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGEIMILTSLFNWSHWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|121309385|dbj|BAF44001.1| NADH dehydrogenase subunit 4 [Geocalamus acutus] Length = 454 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/382 (32%), Positives = 210/382 (54%), Gaps = 11/382 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDML 135 +D +S L++LT +L P +L++ +Q + ++I VL++ ++ F + +M Sbjct: 58 SIDQLSAPLMILTCWLLPLMVLANHHHLQHEPKSLHQTFLITITVLQAALLITFSATEMT 117 Query: 136 LFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSS 193 +FYI FE +LIP ++I WG ER+ A F YT S+ +L A++ TS Sbjct: 118 MFYIMFETTLIPTLLLITRWGAQQERLIAGSYFIFYTLISSLPLLIALLFYYKINSHTSF 177 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK Sbjct: 178 ELTMLNTKQLTNQTSLILWLACMTAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLAAILLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R ++P+F A+ P+ L+L + AS + + QTD+K LIAYSSI+HM Sbjct: 238 LGGYGMLR-MMPMFT-ATMPTIPLTA-LALWGSVMASTICLRQTDLKSLIAYSSISHMAL 294 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I + + G GA+ M++HGL SS F Y+R HTR + GL +P Sbjct: 295 VILAILTNTQWGFTGALTLMIAHGLTSSMAFCLANTSYERTHTRTMTLTAGLQLLLPLMT 354 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ANM LP + +GE +I+++F+ S T + + +L+A+YSL+++ Sbjct: 355 TWWLLMSLANMALPPSINLLGELSIIVTLFKWSPTTIIPLALNTLLTAIYSLYMFITTQH 414 Query: 434 GVSKCEKVQQLKDLSLRERCMV 455 G K + ++ RE ++ Sbjct: 415 G--KPNIMTTMQPSHTREHLLL 434 >gi|47156690|gb|AAT12241.1| NADH dehydrogenase subunit 4 [Equus caballus] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 134/395 (33%), Positives = 205/395 (51%), Gaps = 37/395 (9%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFRE--------YMIAFLVLESMVIGAFLSLD 133 D +S L+VLTT+L P +++ IQ + + Y+ +L++ +I F + + Sbjct: 59 DPLSAPLLVLTTWLLPLMLMA----IQHHLSKEPLIRKKLYITMLTMLQTFLIMTFTATE 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++ FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ Sbjct: 115 LISFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALI--------- 165 Query: 193 SIIDLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 SI +L F IQYW +W+A +F +K+P++ H WLP AHV+AP Sbjct: 166 SIQNLTGSLNF-LLIQYWNQALPDSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAP 224 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGS+ LA I+LK+GGYG +R L P S + A LSL +I S + + QTD+K Sbjct: 225 IAGSMVLAAILLKLGGYGMLRITTMLNPQTS-FMAYPFLMLSLWGMIMTSSICLRQTDLK 283 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 LIAYSS++HM V + + GA M++HGL SS LF Y+R H+R + Sbjct: 284 SLIAYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMI 343 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL +P A ++ ++ N+ LP + IGE V+MS F SN +L + ++ Sbjct: 344 LARGLQTLLPLMAAWWLLASLTNLALPPSINLIGELFVVMSSFSWSNITIILMGANITIT 403 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ALYSL++ G + +K RE ++ Sbjct: 404 ALYSLYMLITTQRG-KYTHHINSIKPSFTRENALM 437 >gi|221143424|ref|YP_002519442.1| NADH dehydrogenase subunit 4 [Rudarius ercodes] gi|219806989|dbj|BAH10495.1| NADH dehydrogenase subunit 4 [Rudarius ercodes] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 209/362 (57%), Gaps = 10/362 (2%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI--QENFREYM-IAFLV-LESMVIGAFL 130 + +L D +S L+VL+ +L P IL+S + + R+ + I+ LV L+ +I AF Sbjct: 53 ANLYLATDALSTPLLVLSCWLLPLMILASQNHLACEPEIRQRLYISLLVSLQIFLIMAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ ++ Sbjct: 113 ATEVMMFYIMFEATLIPTLMIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALSLLYSST 172 Query: 190 KTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ L + P S ++W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 GTLSLLILQYLDPIPLSSAADKFW-WVGCTIAFLVKMPLYGAHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRILIVLSPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R+H+R + L Sbjct: 291 SVSHMGLVIGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERMHSRTMVLARSLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + ++AN+ LP +GE +++ S+ S +L G +++A YSL+ Sbjct: 351 TILPLMATWWFISSLANLALPPLPNLMGELMILASLLNWSTWTILLTGAGSLITAGYSLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|9828507|gb|AAG00211.1| NADH dehydrogenase subunit 4 [Ochotona ladacensis] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 202/353 (57%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S ++LT +L P +++S + + + ++ I+ LVL + +I F +++LF Sbjct: 59 DPLSTPFLILTFWLLPLMLIASQNHLSKESPSRKKLFISMLVLLQIFLIMTFSVTELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG SER+ A F YT GS+ +L A++ + T + I Sbjct: 119 YILFEATLIPTLIIITRWGNQSERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLI 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 I L A +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 IQLLACPLTNSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTVLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP + IGE LVI+S F SN +LA ++++ALY+L++ Sbjct: 358 WWLLASLTNLALPPSINLIGELLVIVSSFSWSNFTIILAGINMLITALYTLYM 410 >gi|107991083|ref|YP_626663.1| NADH dehydrogenase subunit 4 [Hynobius amjiensis] gi|51891108|gb|AAU12938.1| NADH dehydrogenase subunit 4 [Hynobius amjiensis] gi|84371501|gb|ABC55952.1| NADH dehydrogenase subunit 4 [Hynobius amjiensis] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 133/397 (33%), Positives = 221/397 (55%), Gaps = 20/397 (5%) Query: 40 ISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFC 99 ++T +FI ++ +F+ M+ Y LG+D +S L++LT +L P Sbjct: 27 MTTNSFIIAMLSLMMFNLSSEYMLMVNKY----------LGLDPLSSPLLILTCWLLPMM 76 Query: 100 ILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 IL+S ++ N R Y+ ++L++ +I AF + ++++FYI FE +LIP +II W Sbjct: 77 ILASQNHLKNNPDNRQRLYISMMVILQASLILAFTATEIIMFYIAFETTLIPTLIIITRW 136 Query: 156 GG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI---QYWM 211 G +ER+ A F YT GS+ +L A++++ + S L S S+ + W Sbjct: 137 GNQAERLNAGTYFLFYTLAGSLPLLVALLILQNYLGSLSFFLLELTSPMQLSLYSDKIW- 195 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 W A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L+ L PL+ Sbjct: 196 WAACLLAFMVKMPLYGMHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRILITLTPLSK 255 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 + P I L+L +I ++ M QTD+K LIAYSS++HMG V + GA+ Sbjct: 256 ELSYPFII-LALWGVIMTGMICMRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSLSGAII 314 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 M+S L+SSALF + Y+R H+R + G +P A ++ ++NM LP + Sbjct: 315 LMISQDLISSALFGLANMNYERTHSRTLLFMRGAQTMLPLMATWWLLTNLSNMALPPSLN 374 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 GE +++S+F SN ++ G +++A Y+L+++ Sbjct: 375 LWGELTIMVSLFNWSNWTILITGVGTLITASYTLYMF 411 >gi|270267715|ref|YP_003331389.1| NADH dehydrogenase subunit 4 [Conocara murrayi] gi|269994246|dbj|BAI50243.1| NADH dehydrogenase subunit 4 [Conocara murrayi] Length = 460 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/358 (36%), Positives = 199/358 (55%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 L D +S L+VLT +L P IL+S I R Y+ L+ +I AF + ++ Sbjct: 57 LATDPLSTPLLVLTCWLLPLMILASQNHISSEPINRQRTYLSLLTSLQMFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 ILFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLTGSLPLLVALLLLQNNTGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MLTLQYSQPLSLFSYGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SS LF Y+R ++R + GL P Sbjct: 295 MGLVAGGILIQTPWGFTGAIILMIAHGLASSVLFCLANTSYERTNSRTMMLARGLQMLFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 AV + +AN+ LP +GE ++I ++F S G +++A YSL+L+ Sbjct: 355 LTAVWWLTANLANLALPPLPNLMGEIMIITTMFNWSPWTLAFTGLGTLITAAYSLYLF 412 >gi|5835355|ref|NP_007390.1|ND4_12144 NADH dehydrogenase subunit 4 [Equus asinus] gi|3122508|sp|P92484|NU4M_EQUAS RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|1805756|emb|CAA66023.1| NADH dehydrogenase subunit 4 [Equus asinus] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/391 (33%), Positives = 205/391 (52%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ +L++ +I F + +++ F Sbjct: 59 DPLSAPLLVLTTWLLPLMLMASQHHLSKEPLIRKKLYITMLAMLQTFLIMTFTATELISF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ SI + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALI---------SIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L F IQYW +W+A +F +K+P++ WLP AHV+AP AGS Sbjct: 170 LTGSLNF-LLIQYWNQALPDSWSNIFLWLACMMAFMVKMPLYGLRLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L P + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITMMLNP-QTNFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE V+MS F SN +L + ++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPSINLIGELFVVMSSFSWSNITIILMGANITITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLITTQRG-KYTHHINSIKPSFTRENALM 437 >gi|295293726|gb|ADF88256.1| NADH dehydrogenase subunit 4 [Pan troglodytes verus] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 135/403 (33%), Positives = 222/403 (55%), Gaps = 19/403 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LT +L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSLPFSSDPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ + Sbjct: 112 ATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALI---YTH 168 Query: 190 KTSSIIDLYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T +++ ++ + W MW+A+ +F +K+P++ H WLP AHV+AP AGS Sbjct: 169 NTLGSLNILLLTLTTQELSNTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V I GA+ M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYS Sbjct: 348 LQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 L+++ +G S + +K RE +++ PI +L++ Sbjct: 408 LYMFTTTQWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|238866956|ref|YP_002929434.1| NADH dehydrogenase subunit 4 [Eulemur macaco macaco] gi|24817368|gb|AAN64724.1|AF224528_4 NADH dehydrogenase subunit 4 [Eulemur macaco macaco] gi|24817373|gb|AAN64728.1|AF224529_4 NADH dehydrogenase subunit 4 [Eulemur macaco macaco] gi|10954104|gb|AAG25733.1| NADH dehydrogenase subunit 4 [Eulemur macaco macaco] gi|156073023|gb|ABU45845.1| NADH dehydrogenase subunit 4 [Eulemur macaco macaco] gi|156073028|gb|ABU45849.1| NADH dehydrogenase subunit 4 [Eulemur macaco macaco] gi|238809309|dbj|BAH69139.1| NADH dehydrogenase subunit 4 [Eulemur macaco macaco] Length = 459 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 200/355 (56%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P IL+S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMILASQYHLTKESWTLKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYI--QNYLGSLNM 176 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L F W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LTMKLYFQEMPNSWSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL + P + L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITMILDPLTNHMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 296 LVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMVITALYSLYM 410 >gi|108793402|ref|YP_636941.1| NADH dehydrogenase subunit 4 [Diretmus argenteus] gi|25005827|dbj|BAC23459.1| NADH dehydrogenase subunit 4 [Diretmus argenteus] Length = 460 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+ LT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLTLTCWLLPLMILASQSHMSLEPMNRQRTYITLLSSLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNEAGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + +S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMVTLQYVKPLQLLTYSDKVW-WAGCLLAFLVKMPLYGMHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLEPLTKEMSYPFII-LALWGIIMTGSICLRQTDLKALIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALVLMIAHGLASSALFCLANTNYERTHSRTMVLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S VL G +++A YSL+++ Sbjct: 354 PLMTSWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLVLTGAGTLITASYSLYMF 412 >gi|270267444|ref|YP_003331142.1| NADH dehydrogenase subunit 4 [Alepocephalus agassizii] gi|269994092|dbj|BAI50100.1| NADH dehydrogenase subunit 4 [Alepocephalus agassizii] Length = 460 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 204/372 (54%), Gaps = 10/372 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPIGRQRMYISLLTSLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 354 PLTAVWWFTANLANLALPPLPNLMGEIMIISTMFNWSPWTLALTGLGTLITAGYSLYLFL 413 Query: 430 KVVFGVSKCEKV 441 G + V Sbjct: 414 MSQRGPAPAHMV 425 >gi|50301927|gb|AAT74239.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|91702419|gb|ABE47995.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494286|gb|ACE02878.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPCSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|212725476|ref|YP_002317229.1| NADH dehydrogenase subunit 4 [Gasterosteus wheatlandi] gi|212374547|dbj|BAG83114.1| NADH dehydrogenase subunit 4 [Gasterosteus wheatlandi] Length = 460 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 201/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 +Y+L D +S L+VLT +L P I++S R Y+ L+ +I AF + Sbjct: 54 NYYLATDSLSTPLLVLTCWLLPLMIIASQNHTANEPCNRQRVYITLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQTERLNAGVYFLFYTLAGSLPLLIALLLLQNSSG 173 Query: 191 TSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + F F+ + W W + +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTIQYSDPFHLSTFADKLW-WASCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR + L PL + P I F +L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRMIPILDPLTKELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V I + GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVAAILIQTPWSLSGALILMIAHGLASSALFCLANTNYERTHSRTLLLGRGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+GLP +GE ++I S+F S L G +++ YSL++ Sbjct: 352 ALPLMTTWWFIASLANLGLPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITVSYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|150375654|ref|YP_001315068.1| NADH dehydrogenase subunit 4 [Camelus bactrianus] gi|122003941|gb|ABM65778.1| NADH dehydrogenase subunit 4 [Camelus bactrianus] gi|134302855|gb|ABO70673.1| NADH dehydrogenase subunit 4 [Camelus bactrianus] gi|134302869|gb|ABO70686.1| NADH dehydrogenase subunit 4 [Camelus bactrianus] gi|223972299|dbj|BAH23337.1| NADH dehydrogenase subunit 4 [Camelus bactrianus] Length = 459 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/391 (33%), Positives = 213/391 (54%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLIASQSHLSKEPLTRKKVYITMLILLQVLLIMTFTASELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 Y+ FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T+ ++ Sbjct: 119 YVLFEATLVPTLIIITRWGSQAERLNAGSYFLFYTLSGSLPLLVALVYI---QNTTGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 M QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 FLIM-------QYWNQPLMDSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL ++Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRLTTMLNPL-TEYMAYPFLMLSLWGMIMTSSICLRQTDLKALIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATTLMVAHGLTSSMLFCLANTNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A+ ++ ++AN+ LP T +GE V+MS F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAMWWLLASLANLALPPTINLLGELFVVMSAFSWSNITIILMGANMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLIMTQRG-KHTHHINNIKPTYTRENSLM 437 >gi|45826221|gb|AAS77739.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/392 (33%), Positives = 207/392 (52%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ ++ A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLVVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LI Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIG 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|29570623|ref|NP_818809.1| NADH dehydrogenase subunit 4 [Chanos chanos] gi|29501160|dbj|BAC67516.1| NADH dehydrogenase subunit 4 [Chanos chanos] Length = 460 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S + N + I+ L L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHLAPEPINRQRIYISLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IILFYIMFEATLVPTLMIITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLLQNDTGTL 175 Query: 193 SIIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + P S + W W +F K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQFSNPLPLSSWGDKIW-WAGCLIAFLAKMPLYGIHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG +R ++ L PL + P I L+L I+ + + QTD+K LIAYSS++ Sbjct: 235 ILLKLGGYGMMRIIIILDPLTKEMAYPFIV-LALWGIVMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILVQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMALTRGLQVIF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A +AN+ LP +GE ++I ++F S +L G +++A YSL+L+ Sbjct: 354 PLTATWWFAANLANLALPPLPNLMGELMIITALFNWSPWTLILTGAGTLITAGYSLYLF 412 >gi|57544862|ref|YP_063356.2| NADH dehydrogenase subunit 4 [Acanthogobius hasta] Length = 460 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 135/379 (35%), Positives = 205/379 (54%), Gaps = 17/379 (4%) Query: 65 IEYYHWIDYFC-------SYHLGVDGISILLVVLTTFLTPFCILSSWKS-IQENF---RE 113 + + W+ C + + +D +S L+VLT +L P IL+S I E R Sbjct: 36 VTSFSWLSNPCDTGWSLMNQSMALDPLSTPLLVLTCWLLPLMILASQHHMIHEPINRQRT 95 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 ++ L+ +I AF + +++ FYI FEA+L+P ++I WG +ER+ A F YT Sbjct: 96 FITILTTLQVFLILAFSATELIFFYIMFEATLVPTLILITRWGNQAERLNAGTYFLFYTP 155 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFH 229 GS+ +L A++++ T S+ L+ + P + + W W +F +K+P++ H Sbjct: 156 AGSLPLLIALLLLQNTTGTLSLFILHYTTTLPMISIADKLW-WAGCLVAFLVKMPLYGMH 214 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 WLP AHV+AP AGS+ LA I+LK GGYG +R + L PL Q P I L+L +I Sbjct: 215 LWLPKAHVEAPIAGSMILAAILLKTGGYGMMRVMTLLEPLTPQLSYPFII-LALWGVIMT 273 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 + + QTD+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Sbjct: 274 GSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFSGALILMIAHGLTSSALFCLANT 333 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 Y+R HTR + GL +P A ++AN+ LP +GE ++I SVF S Sbjct: 334 NYERTHTRTMVLARGLQMALPLMAAWWFTASLANLALPPLPNLMGELMIITSVFNWSWAT 393 Query: 410 AVLASFGVVLSALYSLWLY 428 L G +++A YSL+++ Sbjct: 394 IALTGAGTLITAGYSLYMF 412 >gi|207559808|gb|ACI24415.1| NADH dehydrogenase subunit 4 [Hemitragus jayakari] Length = 459 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 202/355 (56%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + ++ I+ L+L + +I F + +++LF Sbjct: 59 DSLSTPLLILTMWLLPLMIMASQHHLSKESLARKKLFISMLILLQLFLIMTFSAAELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 Y+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YVMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALMYI--QNTMGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPMPNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITLLLNPITNFMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+ S F SN +L ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVTSTFSWSNITIILMGLNMMITALYSLYM 410 >gi|24817432|gb|AAN64768.1|AF224578_4 NADH dehydrogenase subunit 4 [Hapalemur griseus occidentalis] Length = 458 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 202/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ ++I F + +++ F Sbjct: 59 DSLSSPLVILTMWLLPLMIMASQHHLTKEPWILKKLYLSMLISLQMLLIMTFTATELIYF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI---QNYLGSLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L MS + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 LSTMSLCFQELPNSWSNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVAILIQTPWSFMGATVLMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLFASLTNLALPPSINLIGELLVIMASFSWSNITIILMGLNMLITALYSLYMLTTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|84488674|ref|YP_448864.1| NADH dehydrogenase subunit 4 [Testudo horsfieldii] gi|67005687|gb|AAY62481.1| NADH dehydrogenase subunit 4 [Testudo horsfieldii] Length = 459 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/383 (34%), Positives = 201/383 (52%), Gaps = 19/383 (4%) Query: 40 ISTINFIFSLFVWSV-----FDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTF 94 + TI F +WS F S Q+ + + F +++LGVD IS L++L+ + Sbjct: 12 LPTITFCKPKQLWSTTLIYSFGVALLSLQLFKPSMELMTFSNHYLGVDRISAPLLILSCW 71 Query: 95 LTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV 150 LTP IL+S + R + + L+ +I AF + ++++F+I FE +LIP V Sbjct: 72 LTPLMILASQNHLTMEPISRKRTFTATIIFLQISLILAFSTTELIMFFITFETTLIPTLV 131 Query: 151 IIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQ 208 II WG ER+ A F YT GS+ +L A+ M + + + Y M P + Sbjct: 132 IITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSYM---QTRNGTMSTYTMQLNQPTMMT 188 Query: 209 YWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 W W A +F IK+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG IR + Sbjct: 189 SWAHSLWWFALLIAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITM 248 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 L PL+ P + ++L +I S + + QTD+K LIAYSS++HMG V + Sbjct: 249 TLSPLSKTLSYPFMV-MALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLMQTQW 307 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 GAM M++HGL SS LF Y+R H+R + + +P + ++ ++ NM Sbjct: 308 SHTGAMTLMIAHGLTSSMLFCLANTNYERTHSRMLLLTQNMQLLLPLMGLWWLLASLTNM 367 Query: 385 GLPGTSGFIGEFLVIMSVFQNSN 407 LP T +GE +I S+F SN Sbjct: 368 ALPPTINLMGELTIIASLFNWSN 390 >gi|21717322|ref|NP_659372.3| NADH dehydrogenase subunit 4 [Galeopterus variegatus] Length = 459 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 134/383 (34%), Positives = 206/383 (53%), Gaps = 13/383 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S K + Y+ ++L+ +I F + ++++F Sbjct: 59 DPLSSPLLMLTTWLPPLMIMASQHHLSKETHTRKKLYITMLVLLQLFLIMTFAATELMMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG ER+ A F YT FGS+ +L A+ + T S+ Sbjct: 119 YIMFEATLIPTLIIITRWGNQPERLNAGLYFLFYTLFGSMPLLIALTYI--HNSTGSLNL 176 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L S W +W A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LLLPHWTQMSPPLWSSTLLWTACMTAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P + P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITIILNPPTTPMTYPFLI-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I G GAM M++HGL SS LF Y+R+H R + GL +P Sbjct: 296 LVIVAILIQTPWGFTGAMTLMIAHGLTSSLLFCLANSNYERVHNRTMILARGLQVLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALY+L++ Sbjct: 356 TTWWLLASLANLALPPTINLIGELFVMMTAFSWSNITIILTGLNMLITALYTLFMLTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMV 455 G + + +K RE ++ Sbjct: 416 RG-TLTHHINSIKPTFTRENSLM 437 >gi|159524381|ref|YP_001542764.1| NADH dehydrogenase subunit 4 [Helarctos malayanus] gi|121592340|gb|ABM63274.1| NADH dehydrogenase subunit 4 [Helarctos malayanus] Length = 459 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/390 (33%), Positives = 205/390 (52%), Gaps = 29/390 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLILLQLFLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + + Sbjct: 118 FYILFEATLMPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLH---TQNNLGSL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + M QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NFLVM-------QYWAQPLPNSWSSMFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL S + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLHPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T IGE V+++ F SN L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVMVATFSWSNITITLMGTNIIITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SL++ G + V+ +K RE Sbjct: 407 SLYMLITTQRG-KYTDHVKSIKPSFTRENA 435 >gi|215979689|ref|YP_002333189.1| NADH dehydrogenase subunit 4 [Takifugu vermicularis] gi|215422639|dbj|BAG85479.1| NADH dehydrogenase subunit 4 [Takifugu vermicularis] Length = 460 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 205/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L +++ ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLNQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVTLDPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|110432855|gb|ABG74104.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] Length = 459 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 212/384 (55%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P +++S K E + ++ + L+ +++ F + ++++F Sbjct: 59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP VII WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVAL---SYIQSSMGTLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ +++N+ LP + IGE LV M+ F SNT +L ++++A YSL++ Sbjct: 355 MSTWWLLASLSNLALPPSMNLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S +Q RE ++ Sbjct: 415 QRGKSPYH-MQNFSPSLTRENTLM 437 >gi|288903432|ref|YP_003434152.1| NADH dehydrogenase subunit 4 [Hypoplectrus gemma] gi|226346388|gb|ACO49644.1| NADH dehydrogenase subunit 4 [Hypoplectrus gemma] Length = 460 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 201/359 (55%), Gaps = 16/359 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLL 136 +D IS L+VLT +L P I++S R Y+ L+ +I AF + ++++ Sbjct: 59 IDSISSPLLVLTCWLLPLMIIASQHHTANEPINRQRLYITLLTSLQFFLILAFSATELIM 118 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG + R+ A F YT GS+ +L A++++ + + Sbjct: 119 FYIMFEATLLPTLVIITRWGNQAARLNAGIYFLFYTLAGSLPLLVALLLL---QNHLGTL 175 Query: 196 DLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 L + FP ++ + W W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILPYFPPLELSSYASKLW-WVACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR + L PL + P I ++L +I S + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGLIRMTIILDPLTKELSYPFIV-IALWGVIMTSSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GAM M+SHGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVAGILIQTPWGLAGAMILMISHGLTSSALFCLANTNYERTHSRTMLLARGLQMIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP + E ++I S+F S + G +++A YSL+++ Sbjct: 354 PLMATWWFIASLANLALPPLPNLMAELMIITSLFSWSAWTLAITGLGTLITASYSLYMF 412 >gi|254055013|ref|YP_003058252.1| NADH dehydrogenase subunit 4 [Oryzias dancena] gi|253960473|dbj|BAH84954.1| NADH dehydrogenase subunit 4 [Oryzias dancena] Length = 460 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 133/366 (36%), Positives = 203/366 (55%), Gaps = 16/366 (4%) Query: 70 WIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMV 125 WI + ++ +D +S L+VLT +L P IL+S + R Y+ + L+ + Sbjct: 50 WIS--LNTYMAIDPLSTPLLVLTCWLLPLMILASQNHMSAEPVNRQRTYISLLVSLQIFL 107 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVV 184 I AF + +M++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A+++ Sbjct: 108 IMAFGATEMIMFYVMFEATLIPTLVIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLI 167 Query: 185 MCWEKKTSSIIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 + + T S+ L P + + W W +F +K+P++ H WLP AHV+A Sbjct: 168 L--QNSTGSLSFLTTQFFQPLDMNSTASKLW-WAGCLIAFLVKMPLYGAHLWLPKAHVEA 224 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGS+ LA ++LK+GGYG +R + L PL Q P I L+L ++ + + QTD+ Sbjct: 225 PIAGSMILAAVLLKLGGYGMMRIITILDPLTKQLSYPFIV-LALWGVVMTGSICLRQTDL 283 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K LIAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 284 KSLIAYSSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTL 343 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL +P A + T+AN+ LP +GE +++ S+F S +L G ++ Sbjct: 344 LLARGLQMILPLLASWWFISTLANLALPPLPNLMGELMILTSLFNWSYWTLILTGAGALI 403 Query: 420 SALYSL 425 +A YSL Sbjct: 404 TASYSL 409 >gi|166851914|ref|YP_001661377.1| NADH dehydrogenase subunit 4 [Dendrohyrax dorsalis] gi|166788072|emb|CAP17664.1| NADH dehydrogenase subunit 4 [Dendrohyrax dorsalis] Length = 460 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 134/404 (33%), Positives = 211/404 (52%), Gaps = 15/404 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S + + YM + L+ ++I F + +++LF Sbjct: 60 DALSTPLLILTTWLLPLMLMASQHHLMHEPMTRKKTYMTMLISLQLLLIITFTATELILF 119 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-I 195 YI FE++LIP ++I WG SER+ A F YT GS+ +L +++ M + +I + Sbjct: 120 YIMFESTLIPTMIVITRWGNQSERLNAGLYFLFYTLLGSLPLLISLLYMQNTLGSLNILV 179 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 Y + P S W MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 180 SPYYTNNLPNS---WSTNLMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + LS+ +I S + M QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGMMRITIFLDPLTKSMAYPFLL-LSMWGMIMTSSICMRQTDLKSLIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 ALVIVAIMIQTPWSYMGATTLMIAHGLTSSLLFCLANTNYERMHSRTMILARGLQTLLPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + IGE LVI S F S+T L ++++A Y++ + Sbjct: 356 MSTWWILASLTNLALPPSINLIGELLVITSTFSWSHTTLFLMGLNMLITATYTMHMLTTT 415 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475 G + + M +A L + I P I T Sbjct: 416 QRGKPSHHNKNTIPTFTRENTLMTLHLAPL-ILLPINPTIIMGT 458 >gi|115494631|ref|YP_778912.1| NADH dehydrogenase subunit 4 [Pusa sibirica] gi|115345077|emb|CAJ57114.1| NADH dehydrogenase subunit 4 [Pusa sibirica] Length = 459 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/383 (34%), Positives = 208/383 (54%), Gaps = 11/383 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLARKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLFIQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +I L+A P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 MIQLWA-QPLPSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITALLSPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQVLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYSLYMLITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMV 455 G ++ +K RE ++ Sbjct: 416 RG-KYTYHIKNIKPSFTRENALM 437 >gi|190349492|ref|YP_001974653.1| NADH dehydrogenase subunit 4 [Cyclemys atripons] gi|116518543|gb|ABJ99498.1| NADH dehydrogenase subunit 4 [Cyclemys atripons] Length = 458 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/347 (34%), Positives = 198/347 (57%), Gaps = 15/347 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAF 129 F + +LGVD IS L++L+ +LTP I++ ++ R ++I ++L+ ++ AF Sbjct: 51 FSNCYLGVDKISAPLLILSCWLTPMMIMAGQNNLAVEPTSRKRTFIIITILLQVSLVLAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE++L+P VII WG ER+ A F YT GS+ +L A++ Sbjct: 111 SATELIMFFIAFESTLLPTLVIITRWGVQMERLSAGTYFLFYTLIGSLPLLVALLT---T 167 Query: 189 KKTSSIIDLY--AMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + +S + +Y +S +P+ + W W+A F +F IK+P++ H WLP AHV+AP A Sbjct: 168 QTYTSTLSVYMLQLSPYPYMMNPWTHTMWWLALFIAFMIKMPLYGLHLWLPKAHVEAPIA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG IR + L P P + L+L ++ S + + QTD+K L Sbjct: 228 GSMILAAVLLKLGGYGIIRMTMTLAPPLKMPSYPFMM-LALWGVVMTSFICLRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V + + GA+ M++HGL SS LF Y+R +R + Sbjct: 287 IAYSSVSHMGLVIATTLTRTEWACTGAITLMIAHGLTSSMLFCLANTNYERTSSRTLLLA 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 + +P ++ ++ANM LP T +GE +I+S+F SNT Sbjct: 347 RNMQLLLPLMSLWWFSASLANMALPPTINLMGELAIIVSLFNWSNTT 393 >gi|148922652|ref|YP_001293706.1| NADH dehydrogenase subunit 4 [Dorosoma petenense] gi|148762572|dbj|BAF64019.1| NADH dehydrogenase subunit 4 [Dorosoma petenense] Length = 460 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 208/363 (57%), Gaps = 14/363 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FREYMIAFLV--LESMVIGAFLS 131 + ++ +D +S L+VLT +L P IL+S +E R+ M L+ L++ +I AF + Sbjct: 54 NTYMAIDPLSSPLLVLTCWLLPLMILASQNHTREEPVSRQRMFISLLASLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 114 TEIIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTL---QS 170 Query: 191 TSSIIDLYAMSKF-PFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T+ + + ++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 TTGSLSMMTLNFWQPLTLVSWGDKIWWAGCLAAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMIRMTTILDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL Sbjct: 350 QMLFPLTATWWFIANLANLALPPLPNLMGEVMIITTMFNWSPWTLILTGTGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|319428606|ref|YP_001974679.2| NADH dehydrogenase subunit 4 [Anolis carolinensis] gi|317185868|gb|ACD81892.2| NADH dehydrogenase subunit 4 [Anolis carolinensis] Length = 454 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/352 (36%), Positives = 195/352 (55%), Gaps = 8/352 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLL 136 VD IS L+ LT +L P +++S + + R ++I +L++++I F + +++L Sbjct: 58 VDRISAPLLTLTCWLLPLMVMASQNHLNQEPLHRKRTFLILISILQALLIFTFSTTNLIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+LIP V+I WG +ER+ A F YT S+ +L AI+ + ++ SS Sbjct: 118 FYIMFEATLIPTLVVITRWGNQAERLTAGTYFLFYTLASSLPLLIAILFINFKNNLSSTM 177 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++ + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK Sbjct: 178 VLQMIQPQMMETASNSLLWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG IR L P F P + LSL I+ S + M QTD+K LIAYSS++HMG Sbjct: 238 LGGYGIIRMTTILHPQPLNLFYPFL-ILSLWGIVMTSSICMRQTDLKSLIAYSSVSHMGL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V GAM M++HGL SS LF Y+R H+R + GL P Sbjct: 297 VISACLIQTPWANTGAMLLMIAHGLTSSMLFCLANTSYERTHSRTMVLARGLQLVFPLMT 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 ++ + NM LP + +GE L+I S+F S T +L G +++A+Y+L Sbjct: 357 TWWLLANLTNMALPPSINLMGELLIITSLFNWSMTTIILTGTGTLITAIYTL 408 >gi|302870004|ref|YP_003838641.1| proton-translocating NADH-quinone oxidoreductase subunit M [Micromonospora aurantiaca ATCC 27029] gi|302572863|gb|ADL49065.1| proton-translocating NADH-quinone oxidoreductase, chain M [Micromonospora aurantiaca ATCC 27029] Length = 501 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 115/292 (39%), Positives = 177/292 (60%), Gaps = 4/292 (1%) Query: 147 PMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS 206 PM+ +I WGG++R AA KF LYT FGS+ +L + V+ T+ ++ L + Sbjct: 156 PMYAVIAGWGGADRRRAARKFALYTLFGSVLLLVGVYVVVAAAGTADLVALTGGAGLSRG 215 Query: 207 IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 Q + +FA+K P++P H+WLP+AH QAPT GSV LAG++LKMG YG IR + + Sbjct: 216 TQLAAFTLLALAFAVKSPLWPLHSWLPDAHTQAPTVGSVILAGVLLKMGTYGLIRVAVGV 275 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 P +++ APV+ L++ AI+ LV + Q D+K+LIAYSS+ HMG+V +G+ + +G+ Sbjct: 276 APEGARWAAPVLGVLAVAAILVGGLVCLAQDDLKRLIAYSSVGHMGFVLLGVATLTATGI 335 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 + A+ ++HG+++ LFF G + DR HT + GL PR A ++ +A++GL Sbjct: 336 QAALIGNIAHGVITGLLFFLAGAVKDRAHTGSLAELSGLRETAPRLAGLLGFAAVASLGL 395 Query: 387 PGTSGFIGEFLVIMSVFQNSN----TVAVLASFGVVLSALYSLWLYRKVVFG 434 PG +GF GE +++ Q T+AVLA+ G L+A Y L L R+V G Sbjct: 396 PGLAGFWGEAFAVVAAVQRGGPLWLTLAVLAALGGALTAAYFLRLLRRVTHG 447 >gi|58047416|ref|YP_192936.1| NADH dehydrogenase subunit 4 [Discoglossus galganoi] gi|46242537|gb|AAS83390.1| NADH dehydrogenase subunit 4 [Discoglossus galganoi] Length = 459 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 202/366 (55%), Gaps = 10/366 (2%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVI 126 + +F L D +S L++L+ +L P I++S + R ++ L+ +I Sbjct: 48 LTHFTDNMLATDQLSSPLLILSCWLLPLMIIASQNHMTSEPLTRQRTFISTLTCLQIALI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AF + +++LFY+ FE +LIP ++I WG +ER+ A F YT GS+ +L A++ + Sbjct: 108 VAFGATELILFYVMFELTLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLAL 167 Query: 186 CWEKKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 T SI+ L +M+ +S + W W+A +F +K+P++ H WLP AHV+AP A Sbjct: 168 QKTGGTLSILTLQLSPSMTPMAWSNKAW-WLACLLAFMVKMPLYGTHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA I+LK+GGYG +R + L P P I LSL II S V + QTD+K + Sbjct: 227 GSMVLAAILLKLGGYGIMRISITLAPTMKDLAYPFIV-LSLWGIIMTSSVCLRQTDLKSM 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V GA+ M++HGL+SSALF Y+R H+R + Sbjct: 286 IAYSSVSHMGLVIAAALIQTPWSFTGAIVLMIAHGLISSALFCLANTNYERTHSRALLLS 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G+ +P + +ANM LP + +GE +++S+F SN L G +L+A Sbjct: 346 RGMQSILPLMGTWWLFSNLANMALPPSPNLMGELTIMISMFNWSNWTIALTGMGTLLTAS 405 Query: 423 YSLWLY 428 YSL+++ Sbjct: 406 YSLYMF 411 >gi|298110715|gb|ADI57680.1| NADH dehydrogenase subunit 4 [Ovis aries] gi|298110729|gb|ADI57693.1| NADH dehydrogenase subunit 4 [Ovis aries] Length = 459 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 202/355 (56%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ L+L + +I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLARKKLFISMLILLQLFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YIMFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI--QNTMGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPMPNSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ + + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITLLLNPI-TDFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPSINLIGELFVVMSTFSWSNITIILMGLNMVITALYSLYM 410 >gi|165932489|ref|YP_001650823.1| NADH dehydrogenase subunit 4 [Pegasus volitans] gi|154758816|dbj|BAF74960.1| NADH dehydrogenase subunit 4 [Pegasus volitans] Length = 460 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 207/358 (57%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLDM 134 L D +S L+VL+ +L P IL+S EN + I+ LV L+ +I AF + +M Sbjct: 57 LATDCLSTPLLVLSCWLLPLMILASQNHTAQEPENRQRMYISLLVSLQMFLILAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FE++LIP V+I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 117 IMFYVMFESTLIPTLVLITRWGNQTERLKAGTYFLFYTLAGSLPLLVALLLLQNSTGTLC 176 Query: 194 IIDL-YAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L Y+ S + S + W W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQYSPSTYDLSYANKLW-WLACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L P+ + P I F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIMIMLEPMTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAAGILIQTPWGTTGALVLMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQAILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP + E ++I S+F S ++ G +++A YSL+++ Sbjct: 355 LMATWWFIASLANLALPPLPNLMAEIMIISSLFNWSYFTILITGAGTLITAGYSLYMF 412 >gi|108767292|ref|YP_636118.1| NADH dehydrogenase subunit 4 [Notropis stramineus] gi|105873649|gb|ABF74874.1| NADH dehydrogenase subunit 4 [Notropis stramineus] Length = 460 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 213/389 (54%), Gaps = 17/389 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPIARQRLYITLLTSLQAFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++++ Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL---QQST 172 Query: 193 SIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + L + P +S + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 GTLSLLIIQYTPLLLVSSWSHKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R ++ L PL+ P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGMMRMMMMLDPLSKDLVYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILVQTPWGFTGAIILMIAHGLVSSMLFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 VIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGLGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + +L RE ++ Sbjct: 411 LFLMSQRGPTP-HHIVKLSPFHTREHLLM 438 >gi|317097226|ref|YP_004123359.1| NADH dehydrogenase subunit 4 [Rattus fuscipes] gi|290573435|gb|ADD46552.1| NADH dehydrogenase subunit 4 [Rattus fuscipes] Length = 459 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 136/395 (34%), Positives = 219/395 (55%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P IL+S +++ + + Y+ + L++++I F +++++LF Sbjct: 59 DPLSTPLIILTTWLLPLMILASQNHMKKESPTHQKLYISMLISLQTLLIMTFSTMELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +++ P S W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 L-SLTTQPLS-STWSNNILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRISIILDPLTKSLAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 296 LVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP +GE ++M+ F SN +L + +V++ +YS+++ Sbjct: 356 ATWWLLASLANLALPPLINLMGELFIVMATFSWSNPSIILMATNIVITGMYSMYMIITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 416 RG-KLTSHMNNLQPSHTRESTLMILHILPLMLLTI 449 >gi|148922708|ref|YP_001293732.1| NADH dehydrogenase subunit 4 [Ethmalosa fimbriata] gi|148762600|dbj|BAF64045.1| NADH dehydrogenase subunit 4 [Ethmalosa fimbriata] Length = 460 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 202/362 (55%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ +D +S L+VLT +L P IL+S + R Y+ L++ +I AF + Sbjct: 54 NTYMAIDPLSAPLLVLTCWLLPLMILASQTHTRMEPVSRQRMYISLLASLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 114 TEIIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTL--QSS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGSLSMITLNFGQPLTLMSWGDKIWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMIRMTTILDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE ++I ++F S VL G +++A YSL+ Sbjct: 351 MLFPLTATWWFIANLANLALPPLPNLMGEVMIITTMFNWSPWTLVLTGVGTLITAGYSLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|281376626|ref|YP_003331245.2| NADH dehydrogenase subunit 4 [Alepocephalus umbriceps] Length = 460 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPIGRQRMYISLLTSLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 354 PLTAVWWFTANLANLALPPLPNLMGEIMIISTMFNWSPWTLALTGLGTLITAGYSLYLF 412 >gi|270267532|ref|YP_003331219.1| NADH dehydrogenase subunit 4 [Alepocephalus productus] gi|281372545|ref|YP_003331168.2| NADH dehydrogenase subunit 4 [Alepocephalus australis] gi|269994148|dbj|BAI50152.1| NADH dehydrogenase subunit 4 [Alepocephalus productus] Length = 460 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRMYISLLTSLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 354 PLTAVWWFTANLANLALPPLPNLMGEIMIISTMFNWSPWTLALTGLGTLITAGYSLYLF 412 >gi|270302421|gb|ACZ70442.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302435|gb|ACZ70455.1| NADH dehydrogenase subunit 4 [Orcinus orca] Length = 459 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 130/384 (33%), Positives = 206/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ + L++++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLVTLQTLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YITFEATLIPTLILITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWTQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSSI+HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSISHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 + + GA M++HGL SS LF Y+R H+R + GL P Sbjct: 295 ALIIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGVNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|215979759|ref|YP_002333254.1| NADH dehydrogenase subunit 4 [Torquigener brevipennis] gi|215422709|dbj|BAG85544.1| NADH dehydrogenase subunit 4 [Torquigener brevipennis] Length = 460 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 211/387 (54%), Gaps = 11/387 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPISRQRMYITLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L +++ ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLTQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILITLDPLTKELSYPFII-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMGAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRER 452 +++ G + + L+ RE Sbjct: 410 YMFLMTQRGPAP-NHLLALEPSHTREH 435 >gi|21622596|emb|CAD21802.2| NADH dehydrogenase subunit 4 [Galeopterus variegatus] Length = 474 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 134/383 (34%), Positives = 206/383 (53%), Gaps = 13/383 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S K + Y+ ++L+ +I F + ++++F Sbjct: 59 DPLSSPLLMLTTWLPPLMIMASQHHLSKETHTRKKLYITMLVLLQLFLIMTFAATELMMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG ER+ A F YT FGS+ +L A+ + T S+ Sbjct: 119 YIMFEATLIPTLIIITRWGNQPERLNAGLYFLFYTLFGSMPLLIALTYI--HNSTGSLNL 176 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L S W +W A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LLLPHWTQMSPPLWSSTLLWTACMTAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P + P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITIILNPPTTPMTYPFLI-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I G GAM M++HGL SS LF Y+R+H R + GL +P Sbjct: 296 LVIVAILIQTPWGFTGAMTLMIAHGLTSSLLFCLANSNYERVHNRTMILARGLQVLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALY+L++ Sbjct: 356 TTWWLLASLANLALPPTINLIGELFVMMTAFSWSNITIILTGLNMLITALYTLFMLTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMV 455 G + + +K RE ++ Sbjct: 416 RG-TLTHHINSIKPTFTRENSLM 437 >gi|24817378|gb|AAN64732.1|AF224532_4 NADH dehydrogenase subunit 4 [Eulemur macaco flavifrons] gi|24817383|gb|AAN64736.1|AF224533_4 NADH dehydrogenase subunit 4 [Eulemur macaco flavifrons] gi|10954109|gb|AAG25737.1| NADH dehydrogenase subunit 4 [Eulemur macaco flavifrons] gi|156073033|gb|ABU45853.1| NADH dehydrogenase subunit 4 [Eulemur macaco flavifrons] gi|156073038|gb|ABU45857.1| NADH dehydrogenase subunit 4 [Eulemur macaco flavifrons] Length = 459 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 202/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P IL+S + +E++ + Y+ + L+ +++ F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMILASQYHLTKESWTLKKLYLSMLISLQMLLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYFQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL + P + L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPLTNHMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMVITALYSLYM 410 >gi|16357005|ref|NP_443420.1| NADH dehydrogenase subunit 4 [Gasterosteus aculeatus] gi|16267235|dbj|BAB70361.1| NADH dehydrogenase subunit 4 [Gasterosteus aculeatus] Length = 460 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 201/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 +Y+L D +S L+VLT +L P I++S R Y+ L+ +I AF + Sbjct: 54 NYYLATDSLSTPLLVLTCWLLPLMIIASQNHTAAEPCNRQRVYITLLTSLQIFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + F F+ + W W + +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTIQYSDPFHLSTFADKLW-WASCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR + L PL + P I F +L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRMIPILDPLTKELGYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V I + GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVAAILIQTPWSLSGALILMIAHGLASSALFCLANTNYERTHSRTLLLGRGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+GLP +GE ++I S+F S L G +++ YSL++ Sbjct: 352 ALPLMTTWWFIASLANLGLPPLPNLMGELMIITSLFSWSWWTLALTGAGTLITVSYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|157736029|ref|YP_001491262.1| NADH dehydrogenase subunit 4 [Spicara maena] gi|139000562|dbj|BAF51773.1| NADH dehydrogenase subunit 4 [Spicara maena] Length = 460 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 204/364 (56%), Gaps = 16/364 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S +LG D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 SLYLGTDPLSTPLLVLTCWLLPLMILASQNHTASEPINRQRMYITLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TELIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLIL---QN 170 Query: 191 TSSIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 ++ + L + P +S + W W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 STGSLSLLTLPYSPPMQLSLYSHKLW-WAACLLAFLVKMPLYGIHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR L L PL + P I F +L +I + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGMIRILTILEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVVGGILIQTPWGLSGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P V ++AN+ LP +GE ++I ++F S L G +++A YS Sbjct: 349 LQMILPLMMVWWFFASLANLALPPLPNLMGELMIITALFGWSWWTLALTGVGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|118135683|gb|ABK62694.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 207/391 (52%), Gaps = 31/391 (7%) Query: 83 GISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LFY Sbjct: 60 SLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILFY 119 Query: 139 IFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL 197 I FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ L Sbjct: 120 ILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNFL 177 Query: 198 YAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 I YW MW+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 178 I--------IHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSM 229 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L PL + Y A LS+ +I S + + QTD+K LIAY Sbjct: 230 VLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 289 SSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARGL 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 349 QTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS- 407 Query: 426 WLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 -LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|47587888|gb|AAT35876.1| NADH dehydrogenase subunit 4 [Hapalemur griseus occidentalis] Length = 459 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 202/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ ++I F + +++ F Sbjct: 59 DSLSSPLVILTMWLLPLMIMASQHHLTKEPWTLKKLYLSMLISLQMLLIMTFTATELIYF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI---QNYLGSLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L MS + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 LSTMSLCFQELPNSWSNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVAILIQTPWSFMGATVLMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLFASLTNLALPPSINLIGELLVIMASFSWSNITIILMGLNMLITALYSLYMLTTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|269994106|dbj|BAI50113.1| NADH dehydrogenase subunit 4 [Alepocephalus australis] Length = 461 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRMYISLLTSLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 354 PLTAVWWFTANLANLALPPLPNLMGEIMIISTMFNWSPWTLALTGLGTLITAGYSLYLF 412 >gi|21449912|ref|NP_659309.1| NADH dehydrogenase subunit 4 [Macroscelides proboscideus] gi|21425376|emb|CAD13404.1| NADH dehydrogenase subunit 4 [Macroscelides proboscideus] Length = 459 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 203/354 (57%), Gaps = 10/354 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S + + + Y+ ++L+ +I F S +++LF Sbjct: 59 DALSTPLLILTTWLLPLMLMASQYHLASDSLTRKKLYISMLILLQLFLIMTFTSSELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + + +I+ Sbjct: 119 YIMFEATLIPTLVIITRWGNQNERLNAGVYFLFYTLMGSLPLLIALISIQNSMGSLNIMM 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 L +K P + ++W+A +F IK+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 LQYWNK-PLDSTWSPNFLWLACMMAFMIKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + L P A++ A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTIILEP-ATKTMAYPFIMLSLWGMVMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + + GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 297 VIVAVMIQTPWSFMGATTLMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++AN+ LP + IGE L++ S F SN +L + ++ALYSL++ Sbjct: 357 TWWIMASLANLALPPSINLIGELLIMTSSFTWSNLTILLLGLNMFITALYSLYM 410 >gi|326370286|gb|ADZ56124.1| NADH dehydrogenase subunit 4 [Globicephala macrorhynchus] Length = 459 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 206/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L++++I F + ++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQFHLLKEPLARKKLYITMLIMLQTLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YITFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALMYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPLTGHMAYPFLV-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGMNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|295293516|gb|ADF88061.1| NADH dehydrogenase subunit 4 [Pan troglodytes troglodytes] Length = 459 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 138/402 (34%), Positives = 219/402 (54%), Gaps = 17/402 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LT +L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSLPFSSDPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYIFFE +LIP II WG ER+ A F YT GS+ +L A+ Sbjct: 112 ATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALTY-AHNT 170 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 S I L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 LGSLNILLLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSM 229 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAY Sbjct: 230 VLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HM V I GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 289 SSVSHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGL 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL Sbjct: 349 QTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSL 408 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +++ +G S + +K RE +++ PI +L++ Sbjct: 409 YMFTTTQWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|280978471|ref|YP_003345394.1| NADH dehydrogenase subunit 4 [Myroconger compressus] gi|271280374|dbj|BAI53233.1| NADH dehydrogenase subunit 4 [Myroconger compressus] Length = 460 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 202/363 (55%), Gaps = 12/363 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFL 130 + +L D +S L++L+ +L P L+S ++ R ++ + L+ +I AF Sbjct: 53 ANLYLATDPLSTPLLILSCWLLPLMTLASQNHLKPEPIHRQRTFITLLISLQMFLILAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 113 ATEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLFL--QK 170 Query: 190 KTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 ++ L + P + + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 DLGTLSMLMMQNTDPLNTKTWADKIWWAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAY Sbjct: 231 VLAAVLLKLGGYGMMRVMVILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P ++AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QLIFPLATTWWFTASLANLALPPLPNLMGELMIITSMFNWSYLTIILTGLGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|261348409|gb|ACX70665.1| NADH dehydrogenase subunit 4 [Oryzias dancena] Length = 460 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 200/358 (55%), Gaps = 14/358 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S + R Y+ + L+ +I AF + + Sbjct: 56 YMAIDPLSTPLLVLTCWLLPLMILASQNHMSAEPVNRQRTYISLLVSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 MIMFYVMFEATLIPTLVIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLIL--QNSTG 173 Query: 193 SIIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+ L P + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSFLTTQFFQPLDMNSTASKLW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL Q P I L+L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRIITILDPLTKQLSYPFIV-LALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + T+AN+ LP +GE +++ S+F S +L G +++A YSL Sbjct: 352 ILPLLASWWFISTLANLALPPLPNLMGELMILTSLFNWSYWTLILTGAGALITASYSL 409 >gi|269994162|dbj|BAI50165.1| NADH dehydrogenase subunit 4 [Alepocephalus umbriceps] Length = 461 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPIGRQRMYISLLTSLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 354 PLTAVWWFTANLANLALPPLPNLMGEIMIISTMFNWSPWTLALTGLGTLITAGYSLYLF 412 >gi|56692437|ref|YP_163916.1| NADH dehydrogenase subunit 4 [Anguilla dieffenbachii] gi|56565396|dbj|BAD78071.1| NADH dehydrogenase subunits 4 [Anguilla dieffenbachii] Length = 460 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/389 (33%), Positives = 210/389 (53%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S ++ R Y+ + L+ +I AF + Sbjct: 54 NTYLATDPLSTPLLVLSCWLLPLMILASQNHMRLEPINRQRSYITLLISLQMFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLAL--QKD 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P + W W + +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLTIQYTKPLILSSWGDKLWWAGCLMASLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRMIIILTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 MILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWSIALTGLGTLITAGYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTP-NHIIGLEPSHTREHLLI 438 >gi|25057915|ref|NP_740123.1| NADH dehydrogenase subunit 4 [Pholis crassispina] gi|25006134|dbj|BAC23744.1| NADH dehydrogenase subunit 4 [Pholis crassispina] Length = 460 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P I++S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMIMASQNHTTLEPLNRQRTYITLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLLQNSAGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSDPVQLTSYGDKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRMVVMLDPLTQELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFSGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A V ++AN+ LP +GE ++I S+F S VL G +++A YSL+++ Sbjct: 354 PLMATWWFVASLANLALPPLPNLMGEIMIITSMFNWSWWTLVLTGAGTLITASYSLYMF 412 >gi|269302347|gb|ACZ29023.1| NADH dehydrogenase subunit 4 [Pusa caspica] Length = 459 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 199/355 (56%), Gaps = 10/355 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLARKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI- 194 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T ++ Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLFIQNNMGTLNLL 177 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I L+A P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 MIQLWA-QPLPSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITALLSPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQVLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYSLYM 410 >gi|238908477|ref|YP_002929331.1| NADH dehydrogenase subunit 4 [Loris tardigradus] gi|238809393|dbj|BAH69217.1| NADH dehydrogenase subunit 4 [Loris tardigradus] Length = 459 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/364 (34%), Positives = 202/364 (55%), Gaps = 15/364 (4%) Query: 82 DGISILLVVLTTFLTPFCILSS----WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S +K + Y+ + L+ ++I F + +++LF Sbjct: 58 DTLSTPLLILTTWLLPLMIMASQHHLYKEPLMRKKLYISMLISLQMLLIMTFTASELILF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L V + + + ++ Sbjct: 118 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLLGSLPLL---VTLIYTQNFLGSLN 174 Query: 197 LYAMSKFP--FSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 L+ + F S+ W WIA +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 LHILPLFNQNMSLNSWSNNLTWIACMVAFMVKMPLYGTHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L PL + P + LSL +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRITTILHPLTNSMSYPFLI-LSLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + I GA M++HGL SS +F Y+R+H+R + GL +P Sbjct: 294 MALVIVAILIQTPWSFMGATALMIAHGLTSSMMFCLANSNYERIHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A+ + ++ N+ LP + IGE +++++ F S VL +++ALYSL+++ Sbjct: 354 LMALWWLAASLTNLALPPSINLIGELMIMITSFAWSKLSIVLTGLNTLITALYSLYMFTM 413 Query: 431 VVFG 434 G Sbjct: 414 TQHG 417 >gi|288908731|dbj|BAI76990.1| NADH dehydrogenase subunit 4 [Antennarius striatus] Length = 457 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 207/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ VD IS L+VLT +L P IL+S + E R +++ L++++I AF + + Sbjct: 56 YMAVDYISGPLLVLTCWLLPLMILASRGHMSLEPAERQRMFLLLLTTLQALLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L +++V+ T Sbjct: 116 LMMFYLMFEATLIPTLAMITRWGNQAERLNAGTYFLFYTLAGSLPLLVSLMVLQNSTGTL 175 Query: 193 SIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + + F Y +W+ + +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTL-SFNHFNLDSTYSNKALWVGCLVALLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R + L PL P I L+L +I + + + QTD+K LIAYSS+A Sbjct: 235 VLLKLGGYGMMRITMLLTPLTKDLSYPFII-LALWGLIMTASICLRQTDLKSLIAYSSVA 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI + G GA+ M++HGL SSALF Y+R H+R I G + Sbjct: 294 HMGLVIAGILTQTTWGYLGALTLMVAHGLTSSALFCLANTNYERTHSRTIILIRGAQLIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ ++AN+ LP +GE L+I+++F+ S +L +++A YSL+++ Sbjct: 354 PLMGTWWLIASLANLALPPLPNLVGELLLIVTLFKWSTWSIILTGAATLITAAYSLYMF 412 >gi|221143466|ref|YP_002519481.1| NADH dehydrogenase subunit 4 [Oxymonacanthus longirostris] gi|219806763|dbj|BAH10417.1| NADH dehydrogenase subunit 4 [Oxymonacanthus longirostris] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 209/372 (56%), Gaps = 14/372 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I N + I+ L+ L+ +I AF + + Sbjct: 56 YLATDALSTPLLVLTCWLLPLMILASQNHINHEPYNRQRLYISILISLQIFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 VMLFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALSLLYNTTGTL 175 Query: 193 SIIDL-YA----MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S++ L YA +SK + +W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 176 SLLILQYAEPLYLSKL--TDMFW-WAACILAFLVKMPLYGAHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I L+L I+ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLIILEPLTKELSYPFII-LALWGIVMTGSICLQQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVIGGILIPNPWGFTGALVLMIAHGLTSSALFCLANTNYERTHSRTMILARGLQT 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + +AN+ LP +GE ++I S+ S +L G +++A YSL++ Sbjct: 352 ILPLMTAWWFILALANLALPPLPNLMGELMIITSLLNWSWPTIILTGPGTLIAAGYSLYM 411 Query: 428 YRKVVFGVSKCE 439 + G + + Sbjct: 412 FLMTQRGKTPAQ 423 >gi|288903375|ref|YP_003434099.1| NADH dehydrogenase subunit 4 [Clinocottus analis] gi|226346374|gb|ACO49631.1| NADH dehydrogenase subunit 4 [Clinocottus analis] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 130/357 (36%), Positives = 197/357 (55%), Gaps = 10/357 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDML 135 D +S L+VLT +L P IL+S R Y+ L+ +I AF + ++L Sbjct: 58 ATDPLSTPLLVLTCWLLPLMILASQNHTASEPLSRQRTYLTLLTSLQIFLILAFGATELL 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 LFY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ T S+ Sbjct: 118 LFYVMFEATLIPTLFLITRWGNQAERLNAGIYFLFYTLAGSLPLLVALLLLQNNTGTLSL 177 Query: 195 IDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + S + W W +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 178 LTMQYSTPLELSCYTHKLW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R ++ L PL + P + L+L +I S + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGMMRMVIMLEPLTKELSYPFLI-LALWGVIMTSSICLRQTDLKALIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 296 GLVVGGILIQTPWGFSGALILMVAHGLASSALFCLANTNYERTHSRTLLLARGLQAALPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A +AN+ LP +GE ++I S+F S +L G +L+A YSL+++ Sbjct: 356 MATWWFAACLANLALPPLPNLMGELMIITSLFNWSWPTIILTGAGTLLTASYSLYMF 412 >gi|148922820|ref|YP_001293849.1| NADH dehydrogenase subunit 4 [Pellonula leonensis] gi|148762726|dbj|BAF64162.1| NADH dehydrogenase subunit 4 [Pellonula leonensis] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 134/360 (37%), Positives = 205/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK--SIQENFREYM-IAFLV-LESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S S + R+ M I+ L L++ +I AF + + Sbjct: 56 YMAIDPLSAPLLVLTCWLLPLMILASQNHTSTEPISRQRMYISLLASLQAFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T Sbjct: 116 IIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTL--QSSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSMITLNFGQPLTLMSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMIRMTAVLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+L+ Sbjct: 353 FPLTATWWFIANLANLALPPLPNLMGEVMIITTMFNWSPWTLILTGVGTLITAGYSLYLF 412 >gi|118474847|ref|YP_891373.1| NADH-quinone oxidoreductase chain m [Campylobacter fetus subsp. fetus 82-40] gi|118414073|gb|ABK82493.1| NADH-quinone oxidoreductase chain m [Campylobacter fetus subsp. fetus 82-40] Length = 495 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 150/494 (30%), Positives = 264/494 (53%), Gaps = 27/494 (5%) Query: 6 LSIVTFLPFL-GVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 LS++ FLPF+ GV + LF + G+ + F V++ ++ + L ++ FD + Q Sbjct: 8 LSLIIFLPFIVGVLIALFFND-KAGKLTAFVVSIVVA----VLGLVLFFKFDP-NAGMQF 61 Query: 65 IEYYHWI-DYFCSYHLGVDGIS--ILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121 ++ + Y SY +GVDGI+ ILL++ + F F IL + K + Y L + Sbjct: 62 VDSISLVPKYGISYLVGVDGINLYILLIITSAFPPLFFILKNRK------KGYWANMLFM 115 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLF 180 +S + SLD++ FY +E LIP+F+++G++G S R A Y FGS+ ML Sbjct: 116 QSGFLSVVSSLDLVYFYAGWEMMLIPIFIMVGIYGKDSGRAGALMDMMYYAIFGSMIMLG 175 Query: 181 AIVVMCWEKKTS------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234 AI+ + + DL +S +Q ++ F +F IK+P+FPFH W+ N Sbjct: 176 AIIYIGAAHYYEFGFFSFRLEDLIKVS-LNSDLQTVLFFCFMLAFVIKLPLFPFHLWMSN 234 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 A+ ++ T + L+ I K+ + +RF+LPLFP++ ++ L L +++Y + ++ Sbjct: 235 AYTKSLTTATFMLSVIASKVAVFAILRFVLPLFPVSFVNYSTWFISLGLFSMLYFGIAAI 294 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 D K L+AY+S +H+G + G+F+ + G+M+Q+++H + S +F VG+I ++L Sbjct: 295 KVKDFKTLLAYASASHLGLIIAGVFALDVEAMTGSMYQVVAHAITSGIMFLLVGMISEQL 354 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 TR I GGL P +A + + ++++GLP T GF+GE L+I +F+ + + + Sbjct: 355 GTRKISKLGGLAIKAPVFATIFAIAMISSVGLPATVGFVGELLIIFGLFKANLIYGIFGT 414 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF-FGIYPVPIR 473 +V+ A+Y +YRK + + E + KDL RE + + +AV +F GIYP P Sbjct: 415 TSIVIGAIYMFIVYRKAILQ-NTNELTAKFKDLRKRE-ILAFLVAVAMIFIMGIYPKPFI 472 Query: 474 DTFSVPLSSIIENY 487 ++ E+Y Sbjct: 473 KQIEPTMNERYESY 486 >gi|115494757|ref|YP_778886.1| NADH dehydrogenase subunit 4 [Phoca largha] gi|37620624|gb|AAQ95121.1| NADH dehydrogenase subunit 4 [Phoca largha] gi|115345035|emb|CAJ57075.1| NADH dehydrogenase subunit 4 [Phoca largha] gi|227002030|gb|ACP04266.1| NADH dehydrogenase subunit 4 [Phoca largha] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 200/355 (56%), Gaps = 10/355 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLFIQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +I L+A P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 MIQLWA-QPLPSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITVLLSPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQVLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYSLYM 410 >gi|119360229|ref|YP_913272.1| NADH dehydrogenase subunit 4 [Cyprinella lutrensis] gi|119224949|dbj|BAF41333.1| NADH dehydrogenase subunit 4 [Cyprinella lutrensis] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 139/389 (35%), Positives = 213/389 (54%), Gaps = 17/389 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPIVRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ +++ Sbjct: 116 IIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL---QQSE 172 Query: 193 SIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + L + P +S + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 GTLSLLIIQYSPPTLMSSWSHKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R ++ L PL+ P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGMMRMMMMLDPLSKDLIYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSMLFCLANTAYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 VIFPLAAVWWFIANLANLALPPLPNLMGELMIITTLFSWSPWTIALTGLGTLVTAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + V +L RE ++ Sbjct: 411 MFLMSQRGPTP-QHVIKLSPFHTREHLLM 438 >gi|110432630|gb|ABG73924.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 206/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLALTTWLLPLTIMASQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QNHTGTVN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + + W MW+A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YSL + Sbjct: 355 MSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILMGLNMLITATYSLHMLATT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S + L RE ++ Sbjct: 415 QRGKS-LYHMHNLNPSLTRENTLM 437 >gi|38707516|ref|NP_944616.1| NADH dehydrogenase subunit 4 [Balaena mysticetus] gi|38602427|emb|CAD87893.1| NADH4 protein [Balaena mysticetus] gi|39981074|gb|AAR33068.1| NADH dehydrogenase subunit 4 [Balaena mysticetus] gi|62086660|dbj|BAD91755.1| NADH dehydrogenase subunit 4 [Balaena mysticetus] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 205/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + R+ Y+ ++L++++I F + +++LF Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLLKEPPVRKKLYITMLIMLQALLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + T+ ++ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALTYL---QNTTGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQHWAQPLSTSWSNIFLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V++S F SN +L +V++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVVVSAFSWSNPTILLMGTNIVITALYSLYM 410 >gi|280978191|ref|YP_003345134.1| NADH dehydrogenase subunit 4 [Derichthys serpentinus] gi|271280444|dbj|BAI53285.1| NADH dehydrogenase subunit 4 [Derichthys serpentinus] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 212/386 (54%), Gaps = 11/386 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VL+ +L P +++S + R ++ + L+ ++ AF + + Sbjct: 56 YMATDPLSTPLLVLSCWLLPLMVMASQNHMALEPLNRQRSFITLLVSLQILLTLAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLILQKDLGTL 175 Query: 193 SIIDL-YAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + Y P S + W WI +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTIQYTKPPTPSSWGDKMW-WIGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ P + P I L+L II + + QTD+K +IAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMFNPTTKELMYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGLVSSALF Y+R H R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHNRTLLLARGLQMIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A + +AN+ LP +GE ++I S+F S VL G +++A YSL+++ Sbjct: 354 PLMAAWWFIMNLANLALPPLPNLMGELMIITSMFNWSYWTIVLTGLGTLITASYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 414 MTQQGPTP-NHIVGLEPSHTREHLLI 438 >gi|83309081|ref|YP_423958.1| NADH dehydrogenase subunit 4 [Lipotes vexillifer] gi|55274426|gb|AAV49120.1| NADH dehydrogenase subunit 4 [Lipotes vexillifer] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 198/370 (53%), Gaps = 28/370 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L++ +I F ++++ LF Sbjct: 59 DPLSAPLLILTMWLLPLMLMASQFHLLKETPNRKKLYISMLIMLQTFLIMTFTAMELTLF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALMYL--QNMLGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LL--------LQYWTQPLSSSWSNIFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITSILDPLTEDMAYPFLT-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSSI+HM V I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSISHMALVITAILIQTPWSYMGATALMIAHGLSSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ + N+ LP T IGE LVI S F SN+ +L V++ALYS Sbjct: 348 LQIFLPLMATWWLLACLTNLALPPTINLIGELLVITSTFSWSNSTIILLGTNTVITALYS 407 Query: 425 LWLYRKVVFG 434 L++ G Sbjct: 408 LYMLITTQHG 417 >gi|215979745|ref|YP_002333241.1| NADH dehydrogenase subunit 4 [Takifugu ocellatus] gi|215422695|dbj|BAG85531.1| NADH dehydrogenase subunit 4 [Takifugu ocellatus] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 204/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLGQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVTLDPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|190349324|ref|YP_001974743.1| NADH dehydrogenase subunit 4 [Acanthopagrus latus] gi|134153971|gb|ABO64369.1| NADH dehydrogenase subunit 4 [Acanthopagrus latus] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 204/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 SPYLATDALSTPLLVLTCWLLPLMILASQNHTATEPLNRQRMYITLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEVIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQSNAG 173 Query: 191 TSSIIDLY--AMSKFP-FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S++ L A ++ P + + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLTLTYSAPTQLPTYGDKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLTVLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFSGALILMVAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I+S+F S L G +++A YSL++ Sbjct: 352 VLPLMTAWWFIASLANLALPPLPNLMGELMIIVSLFNWSWWTLALTGTGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|91702447|gb|ABE48021.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|91702587|gb|ABE48151.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066127|gb|ABY80416.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492480|gb|ACE01201.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494118|gb|ACE02722.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494258|gb|ACE02852.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|28881937|ref|NP_795777.1| NADH dehydrogenase subunit 4 [Galaxias maculatus] gi|28804894|dbj|BAC58182.1| NADH dehydrogenase subunit 4 [Galaxias maculatus] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 202/363 (55%), Gaps = 12/363 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFL 130 + ++ D +S L+VL+ +L P IL+S N + +I+ L L+ +I AF Sbjct: 53 TNLYIATDPLSTPLLVLSCWLLPLMILASQGHAATEPINRQRTLISLLASLQVFLILAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FY+ FEA+L+P VII WG +ER+ A F YT GS+ +L A++++ + Sbjct: 113 ATEVIMFYVMFEATLLPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QA 170 Query: 190 KTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 S+ L P ++ W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 DAGSLSMLTLQYSAPLTLMTWADKMWWAACLVAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R +L L PL P I L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMVLVLDPLTKDLAYPFIV-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + +AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMATWWFIANLANLALPPLPNLMGELVIITSLFNWSGWTIALTGVGTLITAAYSL 409 Query: 426 WLY 428 +L+ Sbjct: 410 YLF 412 >gi|215979647|ref|YP_002333150.1| NADH dehydrogenase subunit 4 [Takifugu porphyreus] gi|215422597|dbj|BAG85440.1| NADH dehydrogenase subunit 4 [Takifugu porphyreus] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 211/387 (54%), Gaps = 11/387 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNSYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLGQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILVTLDPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRER 452 +++ G + + L+ RE Sbjct: 410 YMFLMTQRGPAP-NHLLALEPSHTREH 435 >gi|15079212|ref|NP_149953.1| NADH dehydrogenase subunit 4 [Episoriculus fumidus] gi|14599786|gb|AAK71090.1|AF348081_9 NADH dehydrogenase subunit 4 [Episoriculus fumidus] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 119/358 (33%), Positives = 199/358 (55%), Gaps = 13/358 (3%) Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYA 163 ++ + Y+ ++L++ +I F + ++++FYI FEA+LIP ++I WG +ER+ A Sbjct: 86 NETEQRKKLYISMLIMLQTFLIMTFSATELIMFYILFEATLIPTLILITRWGNQTERLNA 145 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFS--IQYW----MWIAFFC 217 F YT GS+ +L A++ + + T+ ++ + +++F + W +W+A Sbjct: 146 GLYFLFYTLIGSLPLLVALLYI---QTTTGTLN-FTITQFCAQSIMNSWSDDLLWLACMM 201 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L P+ P Sbjct: 202 AFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITVLLNPITETMAYPF 261 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 + LSL +I S + + QTD+K LIAYSS++HM V + I GA M++HG Sbjct: 262 LL-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L SS LF Y+R+H+R + GL +P A ++ ++ N+ LP T IGE Sbjct: 321 LTSSMLFCLANTNYERIHSRTMILARGLQTILPLMATWWLLASLTNLALPPTINLIGELF 380 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++S F SNT +L VV++ALYSL++ G + + RE C++ Sbjct: 381 IMLSTFSWSNTTMILTGINVVITALYSLYMLIMTQRG-KYSYHINTINPTFTRENCLM 437 >gi|71658116|ref|YP_272011.1| NADH dehydrogenase subunit 4 [Plesiobatis daviesi] gi|49066391|gb|AAT49286.1| NADH dehydrogenase subunit 4 [Plesiobatis daviesi] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 208/367 (56%), Gaps = 18/367 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +LGVD +S L+ LT +L P +L+S + R Y+ + L+ ++I AF Sbjct: 52 FSNLYLGVDPLSSPLLTLTCWLLPLMLLASQNHLNNEPHTRQRIYINLLITLQLLLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M+LFYI FEA+LIP +II WG +ER+ A F YT S+ +L A++ + + Sbjct: 112 SATEMILFYIMFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLMASLPLLIALLALQND 171 Query: 189 KKTSSIIDLYAMSKFP-------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + S++ +FP ++ ++W W A +F +K+P++ H WLP AHV+AP Sbjct: 172 FGSLSMLTF----QFPQLLNSSSWTNKFW-WAACLIAFLVKMPLYGTHLWLPKAHVEAPI 226 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA I+LK+GGYG +R + L PL + P + L+L II S + QTD+K Sbjct: 227 AGSMILAAILLKLGGYGMMRIISILDPLTKEMAFPFLI-LALWGIIMTSSTCLRQTDLKS 285 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+ HMG V I GA M++HGL+SSALF Y+R HTR + Sbjct: 286 LIAYSSVTHMGLVVAAILIQTPWSFAGATALMIAHGLISSALFCLANTNYERTHTRTLLL 345 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 G+ +P A + +AN+ LP T +GE L++ S+F+ S ++ GV+L+A Sbjct: 346 TRGMQIVLPLMATSWFLINLANLALPPTPNLMGELLIMSSLFKWSQWTIIMTGLGVLLTA 405 Query: 422 LYSLWLY 428 YSL+++ Sbjct: 406 SYSLYMF 412 >gi|215979591|ref|YP_002333098.1| NADH dehydrogenase subunit 4 [Takifugu chrysops] gi|215422541|dbj|BAG85388.1| NADH dehydrogenase subunit 4 [Takifugu chrysops] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 211/387 (54%), Gaps = 11/387 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPISRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLGQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVTLDPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRER 452 +++ G + + L+ RE Sbjct: 410 YMFLMTQRGPAP-NHLLALEPSHTREH 435 >gi|197253956|ref|YP_002149700.1| NADH dehydrogenase subunit 4 [Pseudopungtungia nigra] gi|171676016|gb|ACB49326.1| NADH dehydrogenase subunit 4 [Pseudopungtungia nigra] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 209/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL + P IL+S I + R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLPCWPLPLMILASQNHINPEPIKRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP + I WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IVMFYIMFEATLIPTLITITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVIQYSQPLLLNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLDPLSKELVYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMVLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIALTGAGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 LMSQRGPTPSH-IMKLPPFHTREHLLM 438 >gi|215979619|ref|YP_002333124.1| NADH dehydrogenase subunit 4 [Takifugu obscurus] gi|255764528|ref|YP_003097551.1| NADH dehydrogenase subunit 4 [Takifugu fasciatus] gi|215422569|dbj|BAG85414.1| NADH dehydrogenase subunit 4 [Takifugu obscurus] gi|255361313|gb|ACU09511.1| NADH dehydrogenase subunit 4 [Takifugu fasciatus] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 211/387 (54%), Gaps = 11/387 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLGQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVTLDPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRER 452 +++ G + + L+ RE Sbjct: 410 YMFLMTQRGPAP-NHLLALEPSHTREH 435 >gi|10954159|gb|AAG25777.1| NADH dehydrogenase subunit 4 [Eulemur fulvus mayottensis] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYMGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNSILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|45826179|gb|AAS77700.1| NADH dehydrogenase subunit 4 [Sus scrofa] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/392 (33%), Positives = 207/392 (52%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYI--QNTTGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L I YW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LI--------IHYWSHPLSHSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + Y A LS+ +I S + + TD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTILNPL-TNYMAYPFLMLSMWGMIMTSSICLRPTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAIMIPTPWSFMGATALMIAHGLTSSMLFCLAHTNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE +I + F SN +L ++++ALYS Sbjct: 348 LQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYS 407 Query: 425 LWLYRKVVFGVSK-CEKVQQLKDLSLRERCMV 455 LY ++ K + +K RE ++ Sbjct: 408 --LYMLIITQRGKYTHHINNIKPSFTRENALM 437 >gi|37620622|gb|AAQ95120.1| NADH dehydrogenase subunit 4 [Pusa hispida] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 199/355 (56%), Gaps = 10/355 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLFIQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +I L+A P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 MIQLWA-QPLPSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITTLLSPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQVLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYSLYM 410 >gi|24817456|gb|AAN64784.1|AF224583_4 NADH dehydrogenase subunit 4 [Hapalemur simus] gi|24817461|gb|AAN64788.1|AF224584_4 NADH dehydrogenase subunit 4 [Hapalemur simus] Length = 458 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/364 (34%), Positives = 202/364 (55%), Gaps = 14/364 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLV-LESMVIGAFLSLDMLL 136 D +S LV+LT +L P I++S + + ++ I+ L+ L+ +++ F + +++L Sbjct: 58 TDPLSSPLVILTMWLLPLMIMASQHHLMKESWTLKKLYISMLISLQMLLVMTFTATELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + Sbjct: 118 FYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALI---YTQNHLGSL 174 Query: 196 DLYAM----SKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +L M + P S +W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 175 NLSTMILCFQELPNSWSNNLLWTACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRITMMLNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 294 MALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 354 LMATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSLYMLTT 413 Query: 431 VVFG 434 G Sbjct: 414 TQRG 417 >gi|197311167|ref|YP_002154448.1| NADH dehydrogenase subunit 4 [Hypselecara temporalis] gi|197304593|dbj|BAG69520.1| NADH dehydrogenase subunit 4 [Hypselecara temporalis] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLVLTCWLLPLMILASQHHTSSEPVNRQRMYITLLSSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQNS 171 Query: 189 KKTSSIIDLYA---MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L + F F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 SGTLSLLTLQFSPFVQLFSFADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R + L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMTMLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILVQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMTAWWFIASLANLALPPLPSLMGELMIITSLFNWSWWTIALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|192288401|ref|YP_001994454.1| NADH dehydrogenase subunit 4 [Gonorynchus abbreviatus] gi|190715138|dbj|BAG49380.1| NADH dehydrogenase subunit 4 [Gonorynchus abbreviatus] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/388 (33%), Positives = 209/388 (53%), Gaps = 17/388 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + ++ Sbjct: 57 LATDPLSTPLLVLTCWLLPLMILASQNHITPEPVSRQRTYISLLASLQTFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ KT+ Sbjct: 117 IMFYVMFEATLVPTLIIITRWGNQAERLNAGMYFLFYTLAGSLPLLVALLLL---NKTTG 173 Query: 194 IIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + ++ + P + + W W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMHTIGLLPQLSLVSYGDKIW-WVGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR ++ L PL Q P I ++L I+ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMIRVMVVLDPLTEQMAYPFII-MALWGIVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGLTGAIVLMIAHGLASSALFCLANTSYERTHSRSMVFARGLQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A ++ N+ LP +GE ++I ++F + + G ++A YSL+L Sbjct: 352 LFPLTAAWWFGASLVNLALPPLPNLMGELVIIATLFAWAPWTLIFTGLGTAITAAYSLYL 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + +K RE ++ Sbjct: 412 FLMTQRGPVPL-YLTNMKPFHTREHLLI 438 >gi|47589382|gb|AAT36102.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589398|gb|AAT36106.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 212/384 (55%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P +++S K E + ++ + L+ +++ F + ++++F Sbjct: 59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP VII WG +ER+ A F YT GS+ +L V + + + + ++ Sbjct: 119 YILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLL---VALSYIQSSMGTLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ +++N+ LP + IGE LV M+ F SNT +L ++++A YSL++ Sbjct: 355 MSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S +Q RE ++ Sbjct: 415 QRGKSPYH-MQNFSPSLTRENTLM 437 >gi|115345091|emb|CAJ57127.1| NADH dehydrogenase subunit 4 [Pusa sibirica] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/383 (34%), Positives = 208/383 (54%), Gaps = 11/383 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLARKKLYITMLVLLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLFIQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +I L+A P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 MIQLWA-QPLPSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITALLSPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQVLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYSLYMLITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMV 455 G ++ +K RE ++ Sbjct: 416 RG-KYTYHIKNIKPSFTRENALM 437 >gi|46917256|dbj|BAD18040.1| NADH dehydrogenase subunits 4 [Secutor megalolepis] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 197/364 (54%), Gaps = 10/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + R Y+ L+ ++I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQHHMSPEPPTRQRIYITLLSSLQMLLIMAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++ + + S Sbjct: 117 MMFYITFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLMSSLPLLVALLTLQNTTGSLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQFNPHMPLSSSTDKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL Q P I L+L +I + + Q+D+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIMPVLEPLTKQLSYPFII-LALWGMIMTGSICLRQSDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G GA+ M++HGL SSALF Y+R H R + GL P Sbjct: 295 MGLVVAGALLQTPWSFSGALILMIAHGLTSSALFCLANTNYERTHNRTMLLTRGLQTTFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A +F++AN+ LP +GE +VI S+F S +L G +++A YSL++Y Sbjct: 355 LMATWWFLFSLANLALPPLPNLMGELMVITSLFNWSPWTLILTGAGTLITAGYSLYMYLT 414 Query: 431 VVFG 434 G Sbjct: 415 TQRG 418 >gi|221145669|ref|YP_002520018.1| NADH dehydrogenase subunit 4 [Pseudalutarius nasicornis] gi|219806975|dbj|BAH10482.1| NADH dehydrogenase subunit 4 [Pseudalutarius nasicornis] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 134/358 (37%), Positives = 201/358 (56%), Gaps = 8/358 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK--SIQENFRE--YMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S S + N R+ Y+ L+ ++ AF + + Sbjct: 56 YLATDALSTPLLVLTCWLLPLTILASQNHLSREPNNRQRLYISILTSLQIFLVLAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 LMLFYIMFEATLIPTLILITRWGNQAERLNAGIYFLFYTLAGSLPLLVALSLLYGSTGTL 175 Query: 193 SIIDLYAMSKFPFSIQYWM--WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 S++ L S M W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 SLLVLQYSEPLHLSKPTDMLWWAACMLAFLVKMPLYGAHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L L PL + P I L+L II S + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRVLTVLEPLTKELSYPFIA-LALWGIIMTSSICLQQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVISGILIQTPWSFAGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGLQAILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + T+AN+ LP +GE ++I S+ S +L G++++A YSL+++ Sbjct: 355 LMTTWWFISTLANLALPPLPNLMGELMIITSLLNWSWLTIILTGPGMLITASYSLYMF 412 >gi|28268810|gb|AAO37897.1|AF224571_4 NADH dehydrogenase subunit 4 [Hapalemur griseus griseus] gi|28268825|gb|AAO37909.1|AF224575_4 NADH dehydrogenase subunit 4 [Hapalemur griseus alaotrensis] Length = 458 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 201/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ +I F + +++ F Sbjct: 58 DSLSSPLVILTMWLLPLMIMASQHHLTKEPWTLKKLYLSMLISLQMFLIMTFTATELIYF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+V + + ++ Sbjct: 118 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALVYI---QNYLGSLN 174 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L MS + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 175 LSTMSLCFQELPNSWSNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 234 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 235 LKLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 293 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 294 ALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 353 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 354 MATWWLFASLTNLALPPSINLIGELLVIMTSFSWSNITIILMGLNMLITALYSLYMLTTT 413 Query: 432 VFG 434 G Sbjct: 414 QRG 416 >gi|5835028|ref|NP_007091.1|ND4_10464 NADH dehydrogenase subunit 4 [Cyprinus carpio] gi|436883|emb|CAA43336.1| NADH ubiquinone oxidoreductase subunit 4 [Cyprinus carpio] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 204/371 (54%), Gaps = 13/371 (3%) Query: 94 FLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 +L P IL+S I R Y+ +L++ +I AF + ++++FYI FEA+LIP Sbjct: 72 WLLPLMILASQNHINPEPISRERLYITLLALLQTFLIMAFGATEIIMFYIMFEATLIPTL 131 Query: 150 VIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ 208 +II WG +ER+ A F YT GS+ +L A++++ ++ T ++ L P + Sbjct: 132 IIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTGTLSMLVLQYSQPLQLN 189 Query: 209 YW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 W W +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R ++ Sbjct: 190 SWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMMV 249 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 L PL+ + P I L+L II + + QTD+K LIAYSS++HMG V GI Sbjct: 250 MLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPW 308 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 G GA+ M++HGLVSSALF Y+R H+R + GL P AV + +AN+ Sbjct: 309 GFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVIFPLTAVWWFIANLANL 368 Query: 385 GLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQL 444 LP +GE ++I ++F S +L G +++A YSL+++ G + + L Sbjct: 369 ALPPLPNLMGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMFLMSQRGPTP-NHIMGL 427 Query: 445 KDLSLRERCMV 455 + RE ++ Sbjct: 428 QPFHTREHLLM 438 >gi|213136441|gb|ACJ43969.1| NADH dehydrogenase subunit 4 [Tylototriton wenxianensis] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/384 (34%), Positives = 209/384 (54%), Gaps = 9/384 (2%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 + H+ VD IS L+VLT +L P ++S ++ N R Y+I +L+ +I AF Sbjct: 52 TNLHMTVDQISSPLLVLTCWLLPLMTIASQNHLKTNPLSRQRTYLIMLTLLQMSLITAFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 S ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + Sbjct: 112 STELIMFYIAFEATLIPTLVIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLTLQTTM 171 Query: 190 KTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S+ + M + +W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLSLTLIGMMEPMMTKNNSNKILWLACLLAFMVKMPLYGIHLWLPKAHVEAPIAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG I L PL + P L+L ++ L+ M QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGIIWITTILAPLTKEMSYP-FMILALWGVVMTGLICMRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V I + GA+ M+S GL+SSALF + Y+R H+R I G Sbjct: 291 VSHMGLVIAAIMIQTPWSMTGAIILMISLGLISSALFCLANLNYERTHSRTIVLARGTQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++NM LP + GE +++S+F S ++ G +++A Y+L++ Sbjct: 351 ILPIMATWWLLTNLSNMALPPSMNLWGELTIMVSLFNWSPWTILITGTGALITASYTLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRE 451 + G + + QL RE Sbjct: 411 FLMTQRGPTPTH-LNQLSPSHTRE 433 >gi|7580473|ref|NP_037658.1|ND4_15261 NADH dehydrogenase subunit 4 [Talpa europaea] gi|6851075|emb|CAB71168.1| NADH dehydrogenase subunit 4 [Talpa europaea] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 203/362 (56%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + Y+ ++L+ ++ F + +++LF Sbjct: 59 DPLSAPLLVLTTWLLPLMLMASQFHLSNEHLTRKKLYISMLILLQVFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-I 195 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+ + + T S+ + Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGMYFLFYTLVGSLPLLVALTYL--QNFTGSLNL 176 Query: 196 DLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + + P ++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 TIMQLLSVPLPNEWASILLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P + + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITVILSP-HTNFMAYPFMALSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIVAIMIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP T IGE LV++S F SN +L +V++ALYSL++ + Sbjct: 356 ATWWLMASLTNLALPPTINLIGELLVMLSSFSWSNITMILMGLNMVITALYSLYMLIQTQ 415 Query: 433 FG 434 G Sbjct: 416 RG 417 >gi|269302343|gb|ACZ29021.1| NADH dehydrogenase subunit 4 [Halichoerus grypus] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 199/355 (56%), Gaps = 10/355 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLARKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLFIQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +I L+A P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 MIQLWA-QPLPSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITALLSPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQVLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYSLYM 410 >gi|110432645|gb|ABG73936.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 206/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLALTTWLLPLTIMASQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QNHTCTLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + + W MW+A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YSL + Sbjct: 355 MSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILMGLNMLITATYSLHMLATT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S + L RE ++ Sbjct: 415 QRGKS-LYHMHNLNPSLTRENTLM 437 >gi|289183269|ref|YP_003457248.1| NADH dehydrogenase subunit 4 [Ceratias uranoscopus] gi|288909047|dbj|BAI77283.1| NADH dehydrogenase subunit 4 [Ceratias uranoscopus] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/385 (34%), Positives = 212/385 (55%), Gaps = 11/385 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S + R Y++ L+ +I AF + Sbjct: 54 SLYVATDPLSTPLLVLTCWLLPLMILASQNHLGHEPINRQRLYIMLLTFLQVFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVVMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDTG 173 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L P ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQHSPLAPLVSYADKLW-WAASLLAFLVKMPLYGMHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P + F ++ ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRILVVLEPLTKELSYPFLAF-AMWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVVAGILIQTPLGFTGALVLMVAHGLTSSALFCLANTNYERTHSRTMVLARGIQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A T+AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 LLPLMAAWWFTATLANLALPPFPNLMGELMILTSLFNWSYWTLALTGTGTLITAAYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRER 452 + G + + L+ RE Sbjct: 412 FLLTQRGPTPAH-ILALEPSHTREH 435 >gi|189494342|gb|ACE02930.1| NADH dehydrogenase subunit 4 [Canis latrans] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 204/389 (52%), Gaps = 29/389 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLY---------IHN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L F IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 LMGSLNF-LMIQYWTQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+M+ F SN +L + ++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGINITITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KYPHHIKNIKPSFTRENA 435 >gi|215979633|ref|YP_002333137.1| NADH dehydrogenase subunit 4 [Takifugu pardalis] gi|215422583|dbj|BAG85427.1| NADH dehydrogenase subunit 4 [Takifugu pardalis] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 211/387 (54%), Gaps = 11/387 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLGQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVTLDPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRER 452 +++ G + + L+ RE Sbjct: 410 YMFLMTQRGPAP-NHLLALEPSHTREH 435 >gi|154177549|ref|YP_001382281.2| NADH dehydrogenase subunit 4 [Canis lupus lupus] Length = 458 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|115494855|ref|YP_778899.1| NADH dehydrogenase subunit 4 [Pusa caspica] gi|115345063|emb|CAJ57101.1| NADH dehydrogenase subunit 4 [Pusa caspica] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 199/355 (56%), Gaps = 10/355 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLVRKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI- 194 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T ++ Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLFIQNNMGTLNLL 177 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I L+A P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 MIQLWA-QPLPNSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITALLSPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQVLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYSLYM 410 >gi|5834867|ref|NP_006937.1|ND4_10018 NADH dehydrogenase subunit 4 [Phoca vitulina] gi|128756|sp|Q00506|NU4M_PHOVI RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|13441|emb|CAA45266.1| NADH dehydrogenase subunit 4L [Phoca vitulina] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/381 (34%), Positives = 207/381 (54%), Gaps = 11/381 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLFIQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +I L+A P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 MIQLWA-QPLPSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL + + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITVLLSPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQVLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYSLYMLTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERC 453 G ++ +K RE Sbjct: 416 RG-KYTYHIKNIKPSFTRENA 435 >gi|326370300|gb|ADZ56137.1| NADH dehydrogenase subunit 4 [Globicephala macrorhynchus] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 206/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L++++I F + ++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQFHLLKEPLARKKLYITMLIMLQTLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YITFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALMYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILDPLTGHMAYPFLV-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGMNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|317134257|ref|YP_004123197.1| NADH dehydrogenase subunit 4 [Rattus leucopus] gi|290573365|gb|ADD46487.1| NADH dehydrogenase subunit 4 [Rattus leucopus] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 137/393 (34%), Positives = 213/393 (54%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P IL+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMILASQNHMKKENLLHQKLYISMLISLQILLIMTFSTTELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSVGTLNFLI 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + L P MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LSLTTQPLSPTWSNNIMWLACMMAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRVSIILDPLTKSLAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I GA M++HGL SS LF Y+R+H+R + GL P A Sbjct: 298 ITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP +GE ++M+ F SN +L + +V++ +YS+++ G Sbjct: 358 WWLLASLANLALPPLINLMGELFIVMATFSWSNPSIILTAMNIVITGMYSMYMIITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + L+ RE + + P+ +LT+ Sbjct: 418 -KLTNHMNNLQPSHTRELTLMALHIIPLMLLTI 449 >gi|110432625|gb|ABG73920.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] gi|110432635|gb|ABG73928.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] gi|110432655|gb|ABG73944.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] gi|110432670|gb|ABG73956.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] Length = 459 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 206/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLALTTWLLPLTIMASQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QNHTGTLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + + W MW+A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YSL + Sbjct: 355 MSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILMGLNMLITATYSLHMLATT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S + L RE ++ Sbjct: 415 QRGKS-LYHMHNLNPSLTRENTLM 437 >gi|295065674|ref|YP_003587617.1| NADH dehydrogenase subunit 4 [Thunnus obesus] gi|281428598|gb|ADA69857.1| NADH dehydrogenase subunit 4 [Thunnus obesus] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 207/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S + QE R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTAQEPINRQRMYITLLTSLQFFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L YA + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYAPPLQLMSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALTLMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S+ L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGEIMILTSLFNWSHWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|46238034|ref|YP_005980.1| NADH dehydrogenase subunit 4 [Masturus lanceolatus] gi|46092378|dbj|BAD14284.1| NADH dehydrogenase subunit 4 [Masturus lanceolatus] Length = 460 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 204/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + +L D +S L+VLT +L P IL+S + R Y++ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLVLTCWLLPLMILASQNHMTYEPINRQRTYIMLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEIIMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNA 171 Query: 189 KKTSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYSNPLLLTTYADKLW-WAGCLVAFLVKMPLYGAHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL Q P I L+L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRMLVVLEPLTKQLSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILVQTPWGFTGALILMVAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P ++AN+ LP +GE L+I+S+F S L G +++A YSL Sbjct: 350 QIALPLMTAWWFFASLANLALPPLPNLMGELLIIISLFNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|296940247|ref|YP_003667930.1| NADH dehydrogenase subunit 4 [Trioceros melleri] gi|296531248|dbj|BAJ08095.1| NADH dehydrogenase subunit 4 [Trioceros melleri] Length = 450 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 122/396 (30%), Positives = 214/396 (54%), Gaps = 12/396 (3%) Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMI 116 S Q ++ ++ + + + +D IS L+VL+ +L P IL+S ++ R +++ Sbjct: 38 SLQWLKIPMTMNKYSNTYTTIDQISSPLLVLSYWLLPIAILASQNHLKHTTLMHKRMFLM 97 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGS 175 + L++ + + S +++LF+I FEA++IP VII WG +ER+ A F YT S Sbjct: 98 CLMTLQTFLTLSLSSTNLILFFIMFEATMIPTTVIITRWGSQTERLTAGMYFMFYTMISS 157 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 + +L A+++ + + + + ++ ++ P +I +W+A +F +K+PM+ H WLP A Sbjct: 158 MPLLIALLMTNHQMDSINTMLMFTINSKPNTI---LWLACTMAFMVKMPMYGLHLWLPKA 214 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP AGS+ LA I+LK+GGYG +R + P+ P I L+L ++ SL+ + Sbjct: 215 HVEAPIAGSMVLAAILLKLGGYGMMR-ISPMLYQTQMLHYPFII-LALWGMVMTSLICLR 272 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q D+K LIAYSS++HMG V S + GAM M++HG+ SS LF ++Y+R + Sbjct: 273 QPDLKSLIAYSSVSHMGLVVTATMIQTPSSLTGAMMLMVAHGITSSMLFCLANMMYERTN 332 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR + G+ +P ++ + NM +P T +GE V + F S ++ Sbjct: 333 TRTLTMMQGMQTTIPIMTAFWLLANLTNMAIPPTINLMGEITVTTATFNWSTPTIIMTGS 392 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 ++A+YS++++ G K +K RE Sbjct: 393 AATITAIYSMYMFSSTQQG--KMQKDMMTPPAHTRE 426 >gi|89257256|ref|YP_514574.1| NADH dehydrogenase subunit 4 [Cromeria nilotica] gi|88759254|dbj|BAE79938.1| NADH dehydrogenase subunit 4 [Cromeria nilotica] Length = 460 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 137/390 (35%), Positives = 213/390 (54%), Gaps = 11/390 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F ++ D +S L+VLT +L P IL+S + N + I+ L L+ +I AF Sbjct: 52 FAGPYMATDPLSTPLLVLTCWLLPMMILASQNHMNTEPINRQRLYISLLTSLQLFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++ +FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E Sbjct: 112 GATEIFMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQAE 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ + ++ + +S + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLTMQFAKPLALYSWSSKIW-WAGCMIAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R + L P + P I L+L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMSIILDPATKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALALMIAHGLVSSALFCLANTSYERTHSRTLALTRGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P A + +AN+ LP +GE ++I ++F S V+ G +++A YSL Sbjct: 350 QMVFPLAATWWFIMNLANLALPPLPNLMGELVIITAMFNWSPLTIVITGTGTLITACYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +L+ G + V L RE ++ Sbjct: 410 YLFLMSQRGPTPAHIV-NLPPTHTREHLLM 438 >gi|327493013|ref|YP_004347962.1| NADH dehydrogenase subunit 4 [Colomesus psittacus] gi|327392248|dbj|BAK09700.1| NADH dehydrogenase subunit 4 [Colomesus psittacus] Length = 460 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 203/366 (55%), Gaps = 16/366 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYLATDPLSTPLLILSCWLLPLMILASQNHTAHEPASRQRMYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 ASTEMIMFYVMFEATLIPTLILITRWGNQAERLNAGNYFLFYTLAGSLPLLVALLLL--- 168 Query: 189 KKTSSIIDLYAMSKFP------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++ + L + P ++ + W W +F +K+P++ H WLP AHV+AP A Sbjct: 169 QNSNGTLSLLTLLHTPPSQLNTYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K L Sbjct: 228 GSMILAAVLLKLGGYGMMRILVTLEPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 287 IAYSSVGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLA 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G+ +P + T+AN+ LP +GE ++I S+F S VL G +++A Sbjct: 347 RGMQMALPLMTAWWFIATLANLALPPLPNLMGELMIITSMFNWSWWTIVLTGLGTLITAG 406 Query: 423 YSLWLY 428 YSL+++ Sbjct: 407 YSLYMF 412 >gi|292496230|ref|YP_003541104.1| NADH dehydrogenase subunit 4 [Crassostrea iredalei] gi|226247290|gb|ACO40221.1| NADH dehydrogenase subunit 4 [Crassostrea iredalei] Length = 449 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 142/429 (33%), Positives = 228/429 (53%), Gaps = 33/429 (7%) Query: 51 VWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCIL--SSWKSIQ 108 +WSVF + + + FC VD S LV L+ ++ IL SS +++ Sbjct: 32 IWSVFSLTYWVGSGVSWESLSNLFC-----VDIFSSSLVTLSLWVCGISILVSSSMINLR 86 Query: 109 ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKF 167 F + + VL +++ +F+ + +FY+ FE++L+PM +IIG+WG ER+ + Sbjct: 87 GLFNSFWVLVTVLCFLLVQSFMVNTLAMFYVLFESTLVPMIMIIGIWGSQFERVPSIQYI 146 Query: 168 FLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI------QYWMWIAFFCSFAI 221 YT GS +L I M ++Y S F +SI + +W+ F F I Sbjct: 147 AGYTMAGSFPLLLVIASM----------EVYTGSSFIWSIAIKHSVEGVIWVFCFLGFLI 196 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P FPFHTWLP AHVQAP GSV LAGI+LK+GGYG RF++ +F + F ++ L Sbjct: 197 KLPAFPFHTWLPKAHVQAPVGGSVILAGILLKLGGYGITRFMM-VFSYTLEPFGILVITL 255 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 SL +Y +L+ + Q+D+KKLIA+SS++HM + IG+FS + G+ GA ++SHG +SS Sbjct: 256 SLYGSVYGALMCIRQSDVKKLIAFSSVSHMAFPVIGLFSCTEVGLVGAYIMLVSHGFISS 315 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 LF G+ + +H+R I A +P A +V M N+G+P I E L ++S Sbjct: 316 GLFVLCGITSELVHSRKIKALNNATRLLPELAFFWLVAIMMNLGVPPCPVIISEVLCVLS 375 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVL 461 + + ++LS YS LY ++ +K +K ++++++ V Sbjct: 376 AIAIWPWIFIPLLLYLILSGAYSFSLYCQLTETWTKSDKSLLFSEMAIKD--------VD 427 Query: 462 TVFFGIYPV 470 +FF +YP+ Sbjct: 428 ALFFLLYPL 436 >gi|221143452|ref|YP_002519468.1| NADH dehydrogenase subunit 4 [Scobinichthys granulatus] gi|219807003|dbj|BAH10508.1| NADH dehydrogenase subunit 4 [Scobinichthys granulatus] Length = 460 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S + EN + I L L+ +I AF + + Sbjct: 56 YLATDALSTPLLVLSCWLLPLMILASQNHMALEPENRQRLYICLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 VMMFYVMFEATLIPTLILITRWGNQTERLRAGVYFLFYTLAGSLPLLVALSLLYVSTGTL 175 Query: 193 SIIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S Q+W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILQYSEPLQLSGLADQFW-WMGCMLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLTVLDPLTKEMSYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R HTR + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHTRTMVLARGLQTVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+ S L G +++A YSL+++ Sbjct: 354 PLMATWWFISSLANLALPPLPNLMGELMIITSLLNWSWWTIALTGAGTLITAGYSLYMF 412 >gi|226453418|ref|YP_002791077.1| NADH dehydrogenase subunit 4 [Tarentola mauritanica] gi|167030954|gb|ABZ05715.1| NADH dehydrogenase subunit 4 [Tarentola mauritanica] Length = 449 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 133/394 (33%), Positives = 210/394 (53%), Gaps = 12/394 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL----VLESMVIGAFLSLDMLL 136 +D IS L++L+ + P I++S + R FL L++ +I AF + D+ L Sbjct: 59 LDEISTPLIILSAWTLPLMIIASQHHLASAPRMQKHLFLATAATLQTTLIMAFAATDLTL 118 Query: 137 FYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P ++I WG ++R+ A F LYT GS+ +L I+ M + T+ I Sbjct: 119 FYIMFEATLLPTLILITRWGHQAQRLNAGTYFLLYTLAGSLPLLTTILYMNMIRHTN--I 176 Query: 196 DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 L A++ + +W+ +F IKIP++ H WLP AHV+AP AGS+ LA I+LK+G Sbjct: 177 VLLALTNTSLN-STLLWLTCMTAFFIKIPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 235 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 GYG IR + P+ + + L+L +I SL + Q D+K +IAYSS++HMG VT Sbjct: 236 GYGIIR-MTPILAPTMKILSLPFMALALWGMIMTSLTCLRQPDLKAIIAYSSVSHMGLVT 294 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 + GAM M++HG+ SS LF Y+R HTR + GL +P Sbjct: 295 TAALIQTPWSIPGAMVLMIAHGIASSMLFCLANTSYERTHTRMMTMTRGLQLMLPLKTTW 354 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 + ++ NM +P + +GE ++I+S+F + T +L +L+ALYSL ++ Sbjct: 355 WLTASLLNMAMPPSINLLGEIMIILSLFNWTMTTIILTGSATLLTALYSLHMFLST--QR 412 Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 SK V + RE ++ + T+ +YP Sbjct: 413 SKPSPVTA-EPAHTREHLLMVLHLIPTITLIVYP 445 >gi|46917250|dbj|BAD18036.1| NADH dehydrogenase subunits 4 [Secutor hanedai] Length = 460 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 199/364 (54%), Gaps = 10/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + + R+ Y+ L+ ++I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQHHMLPEPPIRQRIYITLLASLQMLLIMAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++ + + S Sbjct: 117 MMFYITFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLMSSLPLLVALLTLQNTTGSLS 176 Query: 194 IIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L P F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQFNPHMPLPSFTDKLW-WTGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL Q P I L+L ++ + + Q+D+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIMPLLEPLTKQLSYPFII-LALWGMVMTGSICLRQSDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G GA+ M++HGL SSALF Y+R H R + GL P Sbjct: 295 MGLVVAGALLQTPWSFSGALILMIAHGLTSSALFCLANTNYERTHNRTMLLTRGLQTTFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A +F++AN+ LP +GE +VI S+F S L G +++A YSL++Y Sbjct: 355 LMATWWFLFSLANLALPPLPNLMGELMVITSLFNWSPWTLTLTGAGTLITAGYSLYMYLT 414 Query: 431 VVFG 434 G Sbjct: 415 TQRG 418 >gi|39841632|ref|NP_950220.1| NADH dehydrogenase subunit 4 [Saccopharynx lavenbergi] gi|38453747|dbj|BAD02193.1| NADH dehydrogenase subunits 4 [Saccopharynx lavenbergi] Length = 460 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 124/367 (33%), Positives = 200/367 (54%), Gaps = 12/367 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L++L+ +L P IL+S ++ + Y+ ++L+ +I AF + + Sbjct: 56 YLSTDLLSAPLLMLSCWLLPLMILASQNHMRPEPLTRQQSYITLMILLQLALIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 + LFY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M K Sbjct: 116 IALFYVMFEATLIPTMIIITRWGSQTERLNAGTYFMFYTLMGSLPLLVALLMM--HKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ L + P+ W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLSLLLTQHEMPYPNTSWGDKIWWLGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R L L P + LSL II + Q+D+K L+AYSS+ Sbjct: 234 AVLLKLGGYGIMRMAAILTSLTKMLSYPFMV-LSLWGIIMTGANCLRQSDLKALVAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V G+ + G G++ M+SHGL SS LF Y+R H+R + G+ Sbjct: 293 SHMGLVVAGVMTQTPWGFTGSLILMISHGLTSSLLFCLTNTNYERTHSRTLLLTRGMCMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 MP + ++ +AN+ LP +GE ++I S+F + +L G +++A YSL+++ Sbjct: 353 MPLMSAWWLIACLANLALPPLPNLMGELMIITSLFNWTYWSIILTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGV 435 G Sbjct: 413 LMTQHGT 419 >gi|280978121|ref|YP_003345069.1| NADH dehydrogenase subunit 4 [Coloconger cadenati] gi|271280665|dbj|BAI53440.1| NADH dehydrogenase subunit 4 [Coloconger cadenati] Length = 460 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 130/360 (36%), Positives = 202/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S + R Y+ + L+ ++ AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMASEPVVRQRTYISLLISLQILLTLAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTL--QKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW---MWIA-FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTKPMDLSSWADKTWCAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L++ II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMIMLGPLTKELAYPFII-LAMWGIIMTGSICLRQTDLKAMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I S+F SN L G +++A YSL+++ Sbjct: 353 LPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSNWTIALTGLGTLITAGYSLYMF 412 >gi|256985304|ref|YP_003162742.1| NADH dehydrogenase subunit 4 [Enoplosus armatus] gi|256542231|dbj|BAH98073.1| NADH dehydrogenase subunit 4 [Enoplosus armatus] Length = 460 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 200/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L++ +I AF + + Sbjct: 56 YMATDALSTPLLVLTCWLLPLMILASQNHTALEPLNRQRMYITLLTSLQAFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 VILFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYTNPLLLSTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIMVVLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLMTSWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMF 412 >gi|74325211|ref|YP_313755.1| NADH dehydrogenase subunit 4 [Cypselurus hiraii] gi|73991764|dbj|BAE43653.1| NADH dehydrogenase subunit 4 [Cypselurus hiraii] Length = 460 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S + + R Y++ L+ +I AF + Sbjct: 54 SLYMATDPLSTPLLVLTCWLLPLMILASQNHMATEPENRQRTYILLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TELIMFYVMFEATLIPTLFIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S++ L + P S + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLTLQHAAISPLSTYADKIW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMISLEPLTKELSYPFII-LALWGVLMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 ALPLMTSWWFLASLANLALPPLPNLMGELMILSSLFNWSPWTLALTGTGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|156073013|gb|ABU45837.1| NADH dehydrogenase subunit 4 [Eulemur mongoz] gi|156073018|gb|ABU45841.1| NADH dehydrogenase subunit 4 [Eulemur mongoz] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 203/353 (57%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + +E++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLMILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + +++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNHLGSLNMLT 178 Query: 197 L-YAMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + Y + + P S M W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MKYYLQEMPNSWSNNMLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL P + L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTILDPLTKHMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +GI GA M++HGL SS LF Y+R+H+R + G+ +P A Sbjct: 298 VVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 358 WWLLASLTNLALPPSINLIGELFVVMASFSWSNITIILMGLNMLITALYSLYM 410 >gi|110432660|gb|ABG73948.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 206/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLALTTWLLPLTIMASQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QNHTGTLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + + W MW+A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YSL + Sbjct: 355 MSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILMGLNMLITATYSLHMLATT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S + L RE ++ Sbjct: 415 QRGKS-LYHMHNLNPSLTRENTLM 437 >gi|47587916|gb|AAT35880.1| NADH dehydrogenase subunit 4 [Hapalemur griseus occidentalis] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 202/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ ++I F + +++ F Sbjct: 59 DSLSSPLVILTMWLLPLMIMASQHHLTKEPWTLKKLYLSMLISLQMLLIMTFTATELIYF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI---QNYLGSLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L MS + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 LSTMSLCFQELPNSWSNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVAILIQTPWSFMGATVLMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE L+IM+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLFASLTNLALPPSINLIGELLIIMASFSWSNITIILMGLNMLITALYSLYMLTTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|108561309|ref|YP_626737.1| NADH dehydrogenase subunit 4 [Canis lupus] gi|122064629|sp|Q3L6Y5|NU4M_CANLU RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|50301843|gb|AAT74161.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50301857|gb|AAT74174.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50301899|gb|AAT74213.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50302025|gb|AAT74330.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|51339370|gb|AAU00449.1| NADH dehydrogenase subunit 4 [Canis lupus] gi|91702475|gb|ABE48047.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|91702559|gb|ABE48125.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|91702615|gb|ABE48177.1| NADH dehydrogenase subunit 4 [Canis lupus] gi|91702629|gb|ABE48190.1| NADH dehydrogenase subunit 4 [Canis lupus] gi|91702657|gb|ABE48216.1| NADH dehydrogenase subunit 4 [Canis lupus] gi|91702671|gb|ABE48229.1| NADH dehydrogenase subunit 4 [Canis lupus] gi|151416772|emb|CAM98646.1| NADH4 protein [Canis lupus lupus] gi|166065553|gb|ABY79883.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065623|gb|ABY79948.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065651|gb|ABY79974.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065665|gb|ABY79987.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065679|gb|ABY80000.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065707|gb|ABY80026.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065735|gb|ABY80052.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065847|gb|ABY80156.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065861|gb|ABY80169.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065987|gb|ABY80286.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066085|gb|ABY80377.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066183|gb|ABY80468.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066253|gb|ABY80533.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066309|gb|ABY80585.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066337|gb|ABY80611.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066393|gb|ABY80663.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066407|gb|ABY80676.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492228|gb|ACE00967.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492242|gb|ACE00980.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492256|gb|ACE00993.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492270|gb|ACE01006.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492284|gb|ACE01019.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492298|gb|ACE01032.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492312|gb|ACE01045.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492326|gb|ACE01058.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492340|gb|ACE01071.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492354|gb|ACE01084.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492382|gb|ACE01110.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492396|gb|ACE01123.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492410|gb|ACE01136.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492424|gb|ACE01149.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492438|gb|ACE01162.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492564|gb|ACE01279.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493894|gb|ACE02514.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493908|gb|ACE02527.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493950|gb|ACE02566.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494062|gb|ACE02670.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494146|gb|ACE02748.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494230|gb|ACE02826.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494328|gb|ACE02917.1| NADH dehydrogenase subunit 4 [Canis lupus] gi|225543940|gb|ACN91448.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|254028463|gb|ACT53159.1| NADH dehydrogenase subunit 4 [Canis lupus chanco] gi|294774399|dbj|BAJ05679.1| NADH dehydrogenase subunit 4 [Canis lupus] gi|294774413|dbj|BAJ05692.1| NADH dehydrogenase subunit 4 [Canis lupus] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|295293642|gb|ADF88178.1| NADH dehydrogenase subunit 4 [Pan troglodytes troglodytes] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 136/402 (33%), Positives = 221/402 (54%), Gaps = 17/402 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LT +L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSLPFSSDPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ Sbjct: 112 ATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTL 171 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + +I+ L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 GSLNIL-LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSM 229 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAY Sbjct: 230 VLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HM V I GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 289 SSVSHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGL 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ LYSL Sbjct: 349 QTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITTLYSL 408 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +++ +G S + +K RE +++ PI +L++ Sbjct: 409 YMFTTTQWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|25057825|ref|NP_740058.1| NADH dehydrogenase subunit 4 [Carangoides armatus] gi|25006064|dbj|BAC23679.1| NADH dehydrogenase subunit 4 [Carangoides armatus] Length = 460 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 201/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NNYMATDALSTPLLVLTCWLLPLMILASQNHTSSEPINRQRMYITLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S++ L + P + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLTLQYSNPIPLATYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMTMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 VLPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGTGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|215979731|ref|YP_002333228.1| NADH dehydrogenase subunit 4 [Takifugu oblongus] gi|215422681|dbj|BAG85518.1| NADH dehydrogenase subunit 4 [Takifugu oblongus] Length = 460 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 204/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLGQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVTLDPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|18077892|ref|NP_542239.1| NADH dehydrogenase subunit 4 [Tachyglossus aculeatus] gi|75047769|sp|Q8W9G4|NU4M_TACAC RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|17932774|emb|CAC88019.1| NADH dehydrogenase subunit 4 [Tachyglossus aculeatus] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 201/363 (55%), Gaps = 12/363 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VL+ +L P IL+S + R Y+I + L+ ++ AF +++ ++ Sbjct: 58 TDPLSSPLLVLSCWLLPLMILASQFHLMNESTTHKRMYLILLVSLQVALLMAFSAVEFMM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 +YI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 118 YYILFETTLIPTLIIIARWGNQTERLNAGLYFLFYTLLGSLPLLVALIFT--QAQMGSLH 175 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L + W +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA I+ Sbjct: 176 ILLLTLTPNPLLNSWSNDILWLACMMAFLVKMPLYGFHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R ++ L P++ P I L+ +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGILRIIIILEPISKLMAYPFII-LATWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V G GA M++HGL S+ LF Y+R H+R + GL +P Sbjct: 295 GLVVAASLIQTPWGFMGATAMMIAHGLTSTMLFRLANTNYERAHSRTMVLIRGLQMVLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++AN+GLP T I E ++I+S F SN +L V++A+YSL++ V Sbjct: 355 MSSWWLLASLANLGLPPTINLISELMIIVSAFSWSNLTLILLGLNTVITAIYSLYMLTSV 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|91702643|gb|ABE48203.1| NADH dehydrogenase subunit 4 [Canis lupus] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|189492368|gb|ACE01097.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493642|gb|ACE02280.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|281428626|gb|ADA69883.1| NADH dehydrogenase subunit 4 [Katsuwonus pelamis] Length = 460 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 202/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQFFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + F+ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSAPLQLASFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S+ L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSHWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|110628443|gb|ABG79705.1| NADH dehydrogenase subunit 4 [Chionodraco rastrospinosus] Length = 460 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+ LT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLALTCWLLPLMILASQHHMSNEPLNRQRTYLTLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT S+ +L A++++ T Sbjct: 116 LIMFYVMFEATLLPTLMIITRWGNQAERLNAGMYFLFYTLASSLPLLVALLILQNTSGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L MS + + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYMSPMSLTTHADKLW-WVGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GG+G +R +L L PL + P I F +L I+ A + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGFGMMRMMLVLEPLTKEMLYPFIVF-ALWGIVMAGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R+H+R I GL + Sbjct: 294 HMGLVVAGILVQTPWGFAGALILMIAHGLTSSALFCLANTNYERIHSRSILLARGLQVVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P +MAN+ LP +GE ++I S+ S L G++++A YS++++ Sbjct: 354 PLMTTWWFFASMANLALPPLPNLMGELMIITSLIGWSYWTLALTGTGMLITASYSMYMF 412 >gi|16519252|gb|AAL25147.1|AF224516_4 NADH dehydrogenase subunit 4 [Eulemur mongoz] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 125/353 (35%), Positives = 201/353 (56%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + +E++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLMILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + + P S M W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MKYYLQEMPNSWSNNMLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL P + L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTILDPLTKHMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +GI GA M++HGL SS LF Y+R+H+R + G+ +P A Sbjct: 298 VVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP + IGE VIM+ F SN +L ++++ALYSL++ Sbjct: 358 WWLLASLTNLALPPSINLIGELFVIMASFSWSNITIILMGLNMLITALYSLYM 410 >gi|215979675|ref|YP_002333176.1| NADH dehydrogenase subunit 4 [Takifugu snyderi] gi|215422625|dbj|BAG85466.1| NADH dehydrogenase subunit 4 [Takifugu snyderi] Length = 460 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 204/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLGQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVTLDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|110432650|gb|ABG73940.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 207/387 (53%), Gaps = 21/387 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLALTTWLLPLTIMASQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QNHTGTLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L+ M+ + P S W MW+A +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 LFMMTYWSQELPNS---WSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R L PL +++ A L L +I SL+ + QTD+K LIAYSS+ Sbjct: 233 AILLKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YSL + Sbjct: 352 LPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILMGLNMLITATYSLHML 411 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G S + L RE ++ Sbjct: 412 ATTQRGKS-LYHMHNLNPSLTRENTLM 437 >gi|212725602|ref|YP_002317346.1| NADH dehydrogenase subunit 4 [Martes zibellina] gi|211997671|gb|ACJ14798.1| NADH dehydrogenase subunit 4 [Martes zibellina] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 129/389 (33%), Positives = 208/389 (53%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+VLTT+L P +++S + + + Y+ + L+ ++I F + ++++ Sbjct: 58 TDSLSAPLLVLTTWLLPLMLMASQHHLSKETLTRKKLYITMLVTLQLLLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLWL---QNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NL-------LVIQYWTQPLLSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL + + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITILLNPL-TDFMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+M+ F SN +L + ++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIILMGINITITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G V+ +K RE Sbjct: 407 SLYMLITTQRG-KYTHHVKNIKPSFTREN 434 >gi|47589307|gb|AAT36089.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589328|gb|AAT36093.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589644|gb|AAT36145.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589675|gb|AAT36149.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589703|gb|AAT36153.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|110432570|gb|ABG73876.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|110432575|gb|ABG73880.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|110432600|gb|ABG73900.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|110432790|gb|ABG74052.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|110432795|gb|ABG74056.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|110432800|gb|ABG74060.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|110432805|gb|ABG74064.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|110432815|gb|ABG74072.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|110432820|gb|ABG74076.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|110432830|gb|ABG74084.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|110432850|gb|ABG74100.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|110432860|gb|ABG74108.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|110432865|gb|ABG74112.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 212/384 (55%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P +++S K E + ++ + L+ +++ F + ++++F Sbjct: 59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP VII WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVAL---SYIQSSMGTLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ +++N+ LP + IGE LV M+ F SNT +L ++++A YSL++ Sbjct: 355 MSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S +Q RE ++ Sbjct: 415 QRGKSPYH-MQNFSPSLTRENTLM 437 >gi|91702405|gb|ABE47982.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|91702461|gb|ABE48034.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|91702573|gb|ABE48138.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065609|gb|ABY79935.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065833|gb|ABY80143.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066001|gb|ABY80299.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066169|gb|ABY80455.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066197|gb|ABY80481.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492494|gb|ACE01214.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492508|gb|ACE01227.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492522|gb|ACE01240.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492536|gb|ACE01253.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492550|gb|ACE01266.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493740|gb|ACE02371.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493754|gb|ACE02384.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493768|gb|ACE02397.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493782|gb|ACE02410.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493796|gb|ACE02423.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493810|gb|ACE02436.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493824|gb|ACE02449.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493838|gb|ACE02462.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493936|gb|ACE02553.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493964|gb|ACE02579.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493978|gb|ACE02592.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493992|gb|ACE02605.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494020|gb|ACE02631.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494104|gb|ACE02709.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494132|gb|ACE02735.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494244|gb|ACE02839.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494300|gb|ACE02891.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|28881993|ref|NP_795803.1| NADH dehydrogenase subunit 4 [Nansenia ardesiaca] gi|28804922|dbj|BAC58208.1| NADH dehydrogenase subunit 4 [Nansenia ardesiaca] Length = 460 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 205/367 (55%), Gaps = 10/367 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK---SIQENFREYMIAFLV-LESMVIGAFLS 131 + +L D +S L++L+ +L P IL+S S EN + I+ L L+ +I AF + Sbjct: 54 NLYLATDPLSTPLLILSCWLLPLMILASQNHMASEPENRQRTYISLLASLQMFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIILFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNHAG 173 Query: 191 TSSIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + F + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLPYTQPLHLSSFGDKLW-WAGCLLAFLVKMPLYGIHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLDPLTKELAYPFIA-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF + Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANITYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A + +AN+ LP +GE ++I S+F S L G +++A YSL+L Sbjct: 352 IFPLTATWWFIANLANLALPPLPNLMGELMIISSMFNWSPWTLALTGAGSLITASYSLYL 411 Query: 428 YRKVVFG 434 + G Sbjct: 412 FLTTQRG 418 >gi|189492830|gb|ACE01526.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 206/389 (52%), Gaps = 29/389 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLY---------IHN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 FP IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 FMGSLNFPM-IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GAM M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGAMALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KYSHHIKNIKPSFTRENA 435 >gi|289183143|ref|YP_003457131.1| NADH dehydrogenase subunit 4 [Sladenia gardineri] gi|288908717|dbj|BAI76977.1| NADH dehydrogenase subunit 4 [Sladenia gardineri] Length = 460 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y++ L+ +I AF + + Sbjct: 56 YMASDPLSTPLLVLTCWLLPLMILASQAHTASEPINRQRVYIMLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 VILFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSTPLHFTAYAHKLW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L ++ + + Q+D+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVMLEPLTKELSYPFII-LALWGVVMTGSICLRQSDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVIAGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLTRGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A ++AN+ LP +GE ++I S+F S V G +++A YSL+++ Sbjct: 354 PLMAAWWFTASLANLALPPLPNLMGELMIITSLFNWSWWTLVFTGVGTLITAAYSLYMF 412 >gi|24817427|gb|AAN64764.1|AF224572_4 NADH dehydrogenase subunit 4 [Hapalemur griseus griseus] Length = 458 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 201/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ +I F + +++ F Sbjct: 58 DSLSSPLVILTMWLLPLMIMASQHHLTKEPWTLKKLYLSMLISLQMFLIMTFTATELIYF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 118 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI---QNYLGSLN 174 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L MS + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 175 LSTMSLCFQELPNSWSNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 234 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 235 LKLGGYGMMRITMILNPM-TKYLAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 293 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 294 ALVIVAILIQTPWSFMGATVLMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 353 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 354 MATWWLFASLTNLALPPSINLIGELLVIMASFSWSNITIILMGLNMLITALYSLYMLTTT 413 Query: 432 VFG 434 G Sbjct: 414 QRG 416 >gi|327492593|ref|YP_004347492.1| NADH dehydrogenase subunit 4 [Polyspina piosae] gi|327392290|dbj|BAK09739.1| NADH dehydrogenase subunit 4 [Polyspina piosae] Length = 460 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 204/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPVNRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L +++ + + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 AGSLSLLMLPHLAQLELTTYADKIW-WAGCVLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRIMITLDPLTKELSYPFII-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMAAWWFITSLANLALPPLPNLMGELMIITSLFNWSYWTIGLTGLGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|331746961|ref|YP_004425107.1| NADH dehydrogenase subunit 4 [Plecotus auritus] gi|296099776|gb|ADG95370.1| NADH dehydrogenase subunit 4 [Plecotus auritus] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 200/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S KS + Y+ ++L+ +I F + ++++F Sbjct: 59 DSLSTPLMMLTVWLLPLMIIASQHHLSKSSTSQKKLYITMMILLQVFLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P ++I WGG +ER+ A F YT GS+ +L A++ + KT S+ Sbjct: 119 YILFEATLLPTLIMITRWGGQTERLNAGTYFLFYTLAGSLPLLVALLYT--QNKTGSLNL 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A+ +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LL--------LQYWINPSHYLWTDLAMWLAYMLAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P + P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITLMLNPTTNLMAYPFLI-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIMAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERTHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP + +GE V M++F SN + ++ALY+ Sbjct: 348 LQMILPLMAAWWLMASLANLALPPSINLMGELFVTMAMFSWSNLSMFPLGINITITALYT 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|186694646|gb|ACC86256.1| NADH dehydrogenase subunit 4 [Cricetulus griseus] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 131/356 (36%), Positives = 200/356 (56%), Gaps = 12/356 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++L +L P +L+S I++ N + Y+ ++L++++I F + +++L Sbjct: 58 IDPLSSSLIMLVIWLLPLMLLASQNHIKKETDYNKKLYISMLIILQTLLIPTFSANELML 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+LIP VII WG +ER+ A F YT GSI +L A++ + S+ Sbjct: 118 FYILFEATLIPTLVIITRWGNQTERLSAGLYFLFYTLVGSIPLLIALISI--NSSLGSLN 175 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L Q W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 TLLLTLSNYMLNQSWSNHILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRLSVILDPLTKSMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAIMIQTPWSFMGASALMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQTAFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A+ + ++ N+ LP + IGE L+ +S+F SN +L ++++ALYSL++ Sbjct: 355 MALFWFLGSLTNLALPPSINLIGELLISISLFSWSNFTILLVGTNILITALYSLYM 410 >gi|115494617|ref|YP_778925.1| NADH dehydrogenase subunit 4 [Pusa hispida] gi|115345105|emb|CAJ57140.1| NADH dehydrogenase subunit 4 [Pusa hispida] Length = 459 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 129/358 (36%), Positives = 199/358 (55%), Gaps = 16/358 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLARKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ T + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLFTQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 +I L+A P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 178 MIQLWA-QPLPNS---WSNTHLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++ Sbjct: 234 VLLKLGGYGMMRITTLLSPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HM V + I GA M++HGL SS LF Y+R H+R + GL + Sbjct: 293 HMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQVLL 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 353 PLMAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYSLYM 410 >gi|165932545|ref|YP_001650810.1| NADH dehydrogenase subunit 4 [Aeoliscus strigatus] gi|154758788|dbj|BAF74934.1| NADH dehydrogenase subunit 4 [Aeoliscus strigatus] Length = 460 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 205/358 (57%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWK-SIQE---NFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + QE R Y+ + L++ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHTAQEPANRQRMYITLLISLQTFLIMAFGATEV 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNTTGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L ++ ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MLTLQYSPPVASTNYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L P+ + P I F +L ++ + + QTD+K LIAYSS+ H Sbjct: 236 LLKLGGYGMMRMMILLEPMTKELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSSVGH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + G+ +P Sbjct: 295 MGLVVGGILVQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGMQIVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S +L G +++A YSL+L+ Sbjct: 355 LMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLLLTGAGTLITAGYSLYLF 412 >gi|157736155|ref|YP_001491431.1| NADH dehydrogenase subunit 4 [Doederleinia berycoides] gi|139000806|dbj|BAF51955.1| NADH dehydrogenase subunit 4 [Doederleinia berycoides] Length = 460 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 200/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L++LT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLILTCWLLPLMILASQNHTALEPLNRQRTYITLLTSLQIFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLLNNTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLTLQYSDPLQLVTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLVMLDPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H R + GL Sbjct: 292 VSHMGLVVAGILIQTPWGFTGAIILMIAHGLTSSALFCLANTNYERTHNRTLILTRGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|327492859|ref|YP_004347739.1| NADH dehydrogenase subunit 4 [Tetraodon biocellatus] gi|327392402|dbj|BAK09843.1| NADH dehydrogenase subunit 4 [Tetraodon biocellatus] Length = 460 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 201/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 S ++ D +S L+VL+ +L P IL+S N + I+ L L+ +I AF + Sbjct: 54 SPYMATDPLSTPLLVLSCWLLPLMILASQNHTAHEPINRQRMYISLLTSLQFFLIMAFAA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSNG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + SI+ L + S + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSILTLLHSTPPQLSTYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L L PL + P I L+L +I + M QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRILTTLEPLTKELSYPFII-LALWGVIMTGSICMRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIALTGVGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|317097053|ref|YP_004123116.1| NADH dehydrogenase subunit 4 [Cottus poecilopus] gi|166066449|gb|ABY80715.1| NADH dehydrogenase subunit 4 [Cottus poecilopus] Length = 460 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 204/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S+ L+VLT +L P +L+S R Y+ L+ +I AF + Sbjct: 54 NFYMATDSLSVPLLVLTCWLLPLMVLASQNHTTSEPLNRQRTYLSLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIVMFYVMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L M ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLPYSNPMELSSYAHKLW-WGGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMVVMLEPLTKELSYPFIVF-ALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFSGALILMIAHGLASSALFCLANTSYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S VL G +++A YSL++ Sbjct: 352 VLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIVLTGAGTLITASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|218677296|ref|YP_002427686.1| NADH dehydrogenase subunit 4 [Eremias brenchleyi] gi|134153985|gb|ABO64382.1| NADH dehydrogenase subunit 4 [Eremias brenchleyi] Length = 460 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 130/384 (33%), Positives = 206/384 (53%), Gaps = 11/384 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDML 135 + +S L++LT +L P I++S ++ R +++ + L++ +I F + + + Sbjct: 58 SITPVSAPLIILTCWLLPLMIMASQNHLKTEPVNRKRMFLMTLMTLQTALIMTFAASEFV 117 Query: 136 LFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 LFYI FE +LIP VII WG ER+ A F YT S+ +L ++ + + Sbjct: 118 LFYILFETTLIPTLVIITRWGNQLERLNAGLYFLFYTLASSLPLLITLLHLH-STHLHTS 176 Query: 195 IDLYAMSK--FPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++L+ + + P + M W++ +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 177 MELFFLQQPDLPSTKTAQMFWLSSLLAFMVKLPLYGLHLWLPKAHVEAPIAGSMVLAAIL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR L P P I ++L I+ S + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGLIRISPMLNPHPPTLLLP-IMVMALWGILMTSSICLRQTDLKALIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V I S G+ GAM M++HGL SSALF Y+R HTR + GL P Sbjct: 296 GLVAAAIMSQTPWGMTGAMTLMIAHGLTSSALFTLANTNYERTHTRTLLLVRGLQLIFPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ + NM LP + +GE L+I ++F S +L G +++A YSL+++ Sbjct: 356 LSTWWLLTNLTNMALPPSINLVGELLIITALFNWSPPSIILTGIGTLITASYSLYMFLMT 415 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 GV + Q L RE ++ Sbjct: 416 QRGVISTQ-FQSLYPTHTREHLIL 438 >gi|225622243|ref|YP_002726659.1| NADH dehydrogenase subunit 4 [Lissemys punctata] gi|117581832|gb|ABK41359.1| NADH dehydrogenase subunit 4 [Lissemys punctata] Length = 460 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 129/404 (31%), Positives = 215/404 (53%), Gaps = 13/404 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D IS L++LT +LTP I++S + R + I ++L++++I F + + Sbjct: 56 YLATDQISTPLIILTCWLTPLMIIASQNHMSTEPLPRKRIFTITIVLLQTLLIMTFSTTN 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LF+I FEA+L+P ++I WG ER+ A F LYT GS+ +L A++ + TS Sbjct: 116 LMLFFITFEATLVPTLMMITRWGNQMERLNAGTYFMLYTLIGSLPLLVALLSL--HSHTS 173 Query: 193 SIIDLYAMSKFPFSIQYW---MWI-AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ P W MW+ A +F +P++ H WLP AHV+AP AGS+ LA Sbjct: 174 SLFMPVLQLNPPTMTNTWTNSMWLLAVLTAFTQSMPLYGLHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG IR +L ++ + P I L L II SL+ + QTD+K LIAYSS+ Sbjct: 234 AILLKLGGYGIIRIMLTTNFMSKTLYYPFII-LGLWGIIMTSLICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG +T + + G + M++HGL SS LF + Y+R+H+R + + Sbjct: 293 SHMGLITAATLTQTEWAYTGTIILMIAHGLTSSMLFCLANMNYERIHSRTLLMAQNMQTL 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P ++ ++ NM LP + +GE +I S+F S ++ + G +++A+Y+L ++ Sbjct: 353 LPLMGTWWLLASLTNMALPPSINLMGELTIITSMFIWSPPTILITAIGTLITAMYTLHMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 +G ++ RE + + ++ P PI Sbjct: 413 STTQWG-PHLTHMKSTSPSHTREHLTITLHILPSILLMTKPEPI 455 >gi|10954169|gb|AAG25785.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] Length = 459 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 201/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWTLKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL P + S +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPLTKHMAYPFLMLCSW-GMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + GG+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLAGGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|47587759|gb|AAT35856.1| NADH dehydrogenase subunit 4 [Hapalemur simus] Length = 459 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/364 (34%), Positives = 202/364 (55%), Gaps = 14/364 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLV-LESMVIGAFLSLDMLL 136 D +S LV+LT +L P I++S + + ++ I+ L+ L+ +++ F + +++L Sbjct: 58 TDPLSSPLVILTMWLLPLMIMASQHHLMKESWTLKKLYISMLISLQMLLVMTFTATELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + Sbjct: 118 FYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALI---YTQNHLGSL 174 Query: 196 DLYAM----SKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +L M + P S +W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 175 NLSTMILCFQELPNSWSNNLLWTACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRITMMLNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 294 MALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 354 LMATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSLYMLTT 413 Query: 431 VVFG 434 G Sbjct: 414 TQRG 417 >gi|91176212|ref|YP_537128.1| NADH dehydrogenase subunit 4 [Cricetulus griseus] gi|88766507|gb|ABD49735.1| NADH dehydrogenase subunit 4 [Cricetulus griseus] Length = 459 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 131/356 (36%), Positives = 200/356 (56%), Gaps = 12/356 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++L +L P +L+S I++ N + Y+ ++L++++I F + +++L Sbjct: 58 IDPLSSSLIMLVIWLLPLMLLASQNHIKKETDYNKKLYISMLIILQTLLIPTFSANELML 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+LIP VII WG +ER+ A F YT GSI +L A++ + S+ Sbjct: 118 FYILFEATLIPTLVIITRWGNQTERLSAGLYFLFYTLVGSIPLLIALISI--NSSLGSLN 175 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L Q W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 TLLLTLSNYMLNQSWSNHILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRLSVILDPLTKSMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAIMIQTPWSFMGASALMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQTAFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A+ + ++ N+ LP + IGE L+ +S+F SN +L ++++ALYSL++ Sbjct: 355 MALFWFLGSLTNLALPPSINLIGELLISISLFSWSNFTILLVGTNILITALYSLYM 410 >gi|91702601|gb|ABE48164.1| NADH dehydrogenase subunit 4 [Canis lupus] Length = 459 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKSIKPSFTRENA 435 >gi|25057610|ref|NP_739785.1| NADH dehydrogenase subunit 4 [Melanocetus murrayi] gi|25005701|dbj|BAC23355.1| NADH dehydrogenase subunit 4 [Melanocetus murrayi] Length = 460 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHMTPEPLNRQRVYITLLTSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP ++I WG ++R+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLILITRWGNQTQRLNAGTYFLFYTLAGSLPLLVALLLLQNTTGTL 175 Query: 193 SIIDLYAMSK---FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ S ++ + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTFQYSSPALLTTYADKLW-WVGCLLAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I F +L ++ S + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVTLEPLTKELSYPFIIF-ALWGVVMTSSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GAM M++HGL SSALF Y+R H+R + G+ + Sbjct: 294 HMGLVVGGILIQTPWGFSGAMILMIAHGLTSSALFCLANTQYERTHSRTMILARGMQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S L G +++A YSL+++ Sbjct: 354 PLMTSWWFIASLANLALPPLPNLMGELMILTSLFNWSPWTIALTGAGTLITATYSLYMF 412 >gi|110432665|gb|ABG73952.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] Length = 459 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 206/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLALTTWLLPLTIMASEHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QNHTGTLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + + W MW+A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YSL + Sbjct: 355 MSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILMGLNMLITATYSLHMLATT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S + L RE ++ Sbjct: 415 QRGKS-LYHMHNLNPSLTRENTLM 437 >gi|110432825|gb|ABG74080.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] Length = 459 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 212/384 (55%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P +++S K E + ++ + L+ +++ F + ++++F Sbjct: 59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP VII WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVAL---SYIQSSMGTLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPNSWSNYVLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ +++N+ LP + IGE LV M+ F SNT +L ++++A YSL++ Sbjct: 355 MSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S +Q RE ++ Sbjct: 415 QRGKSPYH-MQNFSPSLTRENTLM 437 >gi|226247251|gb|ACO40185.1| NADH dehydrogenase subunit 4 [Crassostrea ariakensis] Length = 449 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 140/410 (34%), Positives = 218/410 (53%), Gaps = 15/410 (3%) Query: 51 VWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCIL--SSWKSIQ 108 VWS F + + + FC VD S L+ LT ++ I+ S+ +++ Sbjct: 32 VWSAFSLTYWGGSGVSWESLSELFC-----VDIYSSSLISLTLWVCGISIMVSSALLNLR 86 Query: 109 ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKF 167 F + + +L M++ F+ + +FY+ FE++L+PM IIG+WGG ER+ + Sbjct: 87 GTFNLFWVLVTLLAFMLVQCFMVNTLAMFYVLFESTLVPMISIIGIWGGQFERVPSIQYI 146 Query: 168 FLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM-WIAFFCSFAIKIPMF 226 YT GS +L M E + S + SK F+ W+ W A F F IK+P + Sbjct: 147 AAYTVGGSFPLLLVFTAM--ELHSGSSFMWFICSKMDFN---WIFWTACFLGFLIKLPAY 201 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 PFHTWLP AHVQAP GSV LAGI+LK+GGYG R ++ LF + F + LSL Sbjct: 202 PFHTWLPKAHVQAPVGGSVILAGILLKLGGYGITRLMM-LFSYTLESFGIFVIVLSLYGS 260 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 +Y +++ + Q+D+KKLIA+SS++HM + IG+FS + G+ GA ++SHG +SS LF Sbjct: 261 VYGAVMCIRQSDVKKLIAFSSVSHMAFPVIGLFSCTEVGLVGAYIMLVSHGFISSGLFVL 320 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 G+ + +H+R I A V +P + +V MAN+G+P I E L ++S Sbjct: 321 CGISSELVHSRKIKAMNEGVRAIPSLGFIWLVMIMANLGVPPCPVIISEVLSVVSAIALW 380 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 V V + VLS +YS LY ++ K + +++L++ +Y Sbjct: 381 PWVFVPLALYFVLSGVYSFSLYCQLTTSKVKHKTEVLFNEVTLKDMKAMY 430 >gi|240266508|ref|YP_002970856.1| NADH dehydrogenase subunit 4 [Basiliscus vittatus] gi|239735170|dbj|BAH70391.1| NADH dehydrogenase subunit 4 [Basiliscus vittatus] Length = 460 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 198/359 (55%), Gaps = 8/359 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +GVD S L+ L+ +L P +++S + R +++ L++ +I F Sbjct: 52 FLNQWMGVDQFSAPLLALSCWLLPLMVMASQNHLNSEPIYRKRTFLVTLSFLQTFIILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP ++I WG +ER+ A F YT S+ +L +I+ M + Sbjct: 112 SATNLIMFYIMFEATLIPTLILITRWGNQAERLNAGIYFLFYTLASSLPLLISILFMNIK 171 Query: 189 KKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 SSI+ L + Y +W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NNHSSILLLQLTQPQLMTTWSNYMLWTACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG IR + L PL + + P + L+L I+ S + M QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGIIRITILLAPLTPKLYYPFMI-LALWGIVMTSAICMRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V + GA+ M++HGL SS LF Y+R H+R + G Sbjct: 291 SVSHMGLVITACLIQTPWSMTGALVLMIAHGLTSSMLFCLANTNYERTHSRTLLLARGFQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P ++ + NM LP T +GE +I S+F S+T +L G +L+A+YSL Sbjct: 351 IILPLMTTWWLLANLTNMALPPTINLMGELTIITSLFNWSSTTILLTGLGTLLTAIYSL 409 >gi|47588767|gb|AAT36004.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] gi|47588787|gb|AAT36008.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] Length = 459 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/372 (33%), Positives = 199/372 (53%), Gaps = 28/372 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTMWLLPLTIMASQYHLTKEPSQRKKHFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVAL----------SSIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMVTYWSQEMPNSWSNSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNVTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVS 436 L++ G S Sbjct: 408 LYMLTMTQRGKS 419 >gi|115494673|ref|YP_778626.1| NADH dehydrogenase subunit 4 [Bufo gargarizans] gi|82395916|gb|ABB72537.1| NADH dehydrogenase subunit 4 [Bufo gargarizans] Length = 454 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 134/371 (36%), Positives = 210/371 (56%), Gaps = 26/371 (7%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + + +D IS L+VLT +LT +L+S + + R Y+ ++L+ + AF Sbjct: 50 FLNNYFTIDEISSPLLVLTCWLTAPTLLASQSKLSKEPISRQRAYIFTIIMLQVTTLLAF 109 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 L+ +M+LF+I FEA++IP ++I WG ER+ A YT FGS+ +L A++ Sbjct: 110 LADNMILFFIMFEATMIPTLIVITRWGAQKERMLAGTYLIFYTLFGSMALLTALLYFHET 169 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM-------WIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 T SI +++K FS Y + W+A +F +K+P++ H WLP AHV+AP Sbjct: 170 FGTMSI----SLAK-SFSANYTLSTCSLTWWLACLIAFLVKMPLYGVHLWLPKAHVEAPI 224 Query: 242 AGSVFLAGIMLKMGGYGCIR---FLLPLF-PLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 AGS+ LAG +LK+GGYG +R F+ F PLA P+I F SL ++ ++++ QT Sbjct: 225 AGSMILAGTLLKLGGYGILRMNAFITDSFTPLAQ----PLIVF-SLFGVLLSAILCSRQT 279 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K LIA+SS++HMG V + + G+M M+SHGLVSSALF Y+R ++R Sbjct: 280 DLKSLIAFSSVSHMGLVIAASMIKTEWSIAGSMVLMISHGLVSSALFCLANTSYERTNSR 339 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 + G P A ++ T+ N+ LP + FIGE ++ S+FQ SN L G+ Sbjct: 340 TLILLQGTQIIFPLAAAWWLLATLMNLALPPSPNFIGEMSILTSLFQWSNMTLTLTGLGI 399 Query: 418 VLSALYSLWLY 428 + + YSL+++ Sbjct: 400 IFTTAYSLYMF 410 >gi|28894776|ref|NP_795725.1| NADH dehydrogenase subunit 4 [Alepocephalus tenebrosus] gi|28804838|dbj|BAC58130.1| NADH dehydrogenase subunit 4 [Alepocephalus tenebrosus] Length = 460 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 203/372 (54%), Gaps = 10/372 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+ LT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLELTCWLLPLMILASQNHISPEPISRQRTYISLLTSLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L +S F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLSLFSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P AV +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 354 PLTAVWWFTANLANLALPPLPNLMGEIMIISTMFNWSPWTLALTGLGTLITAGYSLYLFL 413 Query: 430 KVVFGVSKCEKV 441 G + + Sbjct: 414 MTQRGPAPAHMI 425 >gi|24817343|gb|AAN64704.1|AF224519_4 NADH dehydrogenase subunit 4 [Eulemur mongoz] gi|29893257|gb|AAP06813.1|AF224520_4 NADH dehydrogenase subunit 4 [Eulemur mongoz] Length = 459 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 203/353 (57%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + +E++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLMILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + + P S M W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MKYYLQEMPNSWSNNMLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +GI GA M++HGL SS LF Y+R+H+R + G+ +P A Sbjct: 298 VVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 358 WWLLASLTNLALPPSINLIGELFVVMASFSWSNITIILMGLNMLITALYSLYM 410 >gi|40804674|ref|NP_955701.1| NADH dehydrogenase subunit 4 [Katsuwonus pelamis] gi|40645300|dbj|BAD06488.1| NADH dehydrogenase subunit 4 [Katsuwonus pelamis] Length = 460 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 202/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQFFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + F+ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSAPLQLASFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S+ L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSHWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|177543319|gb|ACB73049.1| NADH dehydrogenase subunit 4 [Colobus satanas satanas] Length = 459 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 134/410 (32%), Positives = 218/410 (53%), Gaps = 17/410 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFL 130 CS HL D ++ L++LT +L P I++S + + Y+ + L+ +I F+ Sbjct: 52 CSTHLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPPRKKLYVSMMIFLQITLIMTFM 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L ++ + + Sbjct: 112 ATELILFYILFETTLIPTLIIITRWGSQAERLNAGTYFLFYTLTGSLPLLIMLLYIYNDL 171 Query: 190 KTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + +I+ L ++ + +W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLNIMLLTLTARELTNTWSHNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L PL ++Y A LSL +I S + + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMRLTSILDPL-TEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V + + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVIVASLIQTPWSLTGAIILMVAHGLTSSMLFCLANSNYERTHSRIMMLSRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + N+ LP T +GE LV+ + F S+ +L ++++ALYSL + Sbjct: 351 LLPLMAFWWFTANLTNLALPPTINLVGELLVVATSFSWSHITIMLTGLNMLITALYSLHM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT----VFFGIYP 469 Y G+ +K RE +++ PI +L+ V G+ P Sbjct: 411 YVTTQRGL-LTHHATSIKPSFTRENTLMFMHLSPIILLSLNPNVIMGLTP 459 >gi|289183129|ref|YP_003457118.1| NADH dehydrogenase subunit 4 [Lophiodes caulinaris] gi|288908703|dbj|BAI76964.1| NADH dehydrogenase subunit 4 [Lophiodes caulinaris] Length = 460 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 205/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++G D +S L+VLT +L P IL+S + R Y+I L+ +I AF + Sbjct: 54 NLYMGTDPLSTPLLVLTCWLLPLMILASQAHMTSEPKIRQRTYIILLTTLQFFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEVILFYIMFEATLIPTLILITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLLLQNYTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + P++ + +W+ +F +K+P++ H WLP A V+AP AGS+ L Sbjct: 174 TLSLLTLQYTLPLGFTPYTYKM-LWVGCMLAFLVKMPLYGAHLWLPKAPVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRVLAVLEPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVIGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ALPLMTAWWFLASLANLALPPLPNLMGELMIITSLFNWSMWTLILTGLGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|327492999|ref|YP_004347949.1| NADH dehydrogenase subunit 4 [Chelonodon pleurospilus] gi|327392500|dbj|BAK09934.1| NADH dehydrogenase subunit 4 [Chelonodon pleurospilus] Length = 460 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 203/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F + ++ D +S L++L+ +L P IL+S N + I+ L L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLILSCWLLPLMILASQNHTAHEPINRQRMYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 AATEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L S S + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLTLLHASPPQLSSYADKLW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P + L+L I+ + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILITLEPLTKELSYPFLI-LALWGIVMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIALTGLGTLITASYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|215979661|ref|YP_002333163.1| NADH dehydrogenase subunit 4 [Takifugu stictonotus] gi|215422611|dbj|BAG85453.1| NADH dehydrogenase subunit 4 [Takifugu stictonotus] Length = 460 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 204/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLGQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVTLDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMILPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|157736071|ref|YP_001491275.1| NADH dehydrogenase subunit 4 [Lethrinus obsoletus] gi|139000580|dbj|BAF51786.1| NADH dehydrogenase subunit 4 [Lethrinus obsoletus] Length = 460 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLVLTCWLLPLMILASQNHTSSEPTNRQRMYITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYVMFEATLIPTLMLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L + + + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQFSDPLQLISYGDKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMLIVLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S VL G +++A YSL Sbjct: 350 QMALPLMTAWWFLASLANLALPPLPNLMGELMIISSLFNWSWWTLVLTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|222539839|gb|ACM66292.1| NADH dehydrogenase subunit 4 [Apostichopus japonicus] Length = 453 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 201/373 (53%), Gaps = 28/373 (7%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI----GAF 129 F S+ L VD +S L++L+ +L P C L+ ++ N FL L +I F Sbjct: 50 FLSHSLAVDSLSAPLIILSCWLAPLCFLAQ-NVVKGNSGSLQNGFLALTCSIIFFLLLTF 108 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 SL++L F+I FEA+LIP V+I WG + ER+ A F YT FGS+ +L +IV++ Sbjct: 109 SSLNILSFFICFEATLIPTLVLITRWGANVERLQAGTYFLFYTLFGSLPLLVSIVLISQT 168 Query: 189 KKT-----SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T S I+ L + F FSI W W+ +F +K+P++ FH WLP AHV+AP AG Sbjct: 169 TSTLMIPISEIVSLQG-NTF-FSINIW-WVITIVAFLVKMPIYGFHLWLPKAHVEAPVAG 225 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII--YASLVSMV----QT 297 S+ LA I+LK+GGYG IR + YF V ++ +I + +L++ + QT Sbjct: 226 SMILAAILLKLGGYGIIRM--------NAYFPDVTTLSVILTVICCWGALITSILCTRQT 277 Query: 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTR 357 D+K LIAYSS+ HM V G + GA+ M++HGLVSSALF ++Y+R HTR Sbjct: 278 DLKALIAYSSVGHMSLVAAGTIVFSDWTISGAIMLMVAHGLVSSALFALANILYERTHTR 337 Query: 358 DIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV 417 +IF G ++ AN+GLP IGE +I + S +A + Sbjct: 338 NIFITRGFKMITVLLPFWWLISCAANLGLPPLPNLIGELYIITGIISWSIFLAPILGVAT 397 Query: 418 VLSALYSLWLYRK 430 V A+YSL +Y+ Sbjct: 398 VFGAIYSLLIYQN 410 >gi|24817478|gb|AAN64800.1|AF224587_4 NADH dehydrogenase subunit 4 [Varecia variegata variegata] Length = 459 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 126/353 (35%), Positives = 203/353 (57%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P IL+S + +E++ + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSSPLMMLTMWLLPLMILASQHHLAKESWTLKKLYLSMLIFLQMLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ V + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSMPLLVALIYVQNYSGSLNLLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + P S +W+A +F IK+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 TNLCFQELPNSWSNNLLWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L PL ++Y A F L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITVILDPL-TKYMAYPFFMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + G+ +P + Sbjct: 298 IVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGVQAFLPLMST 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 358 WWLLASLTNLALPPSINLIGELFVTMTSFSWSNITIILMGLNMLITALYSLYM 410 >gi|107991139|ref|YP_626591.1| NADH dehydrogenase subunit 4 [Pachyhynobius shangchengensis] gi|84371557|gb|ABC56004.1| NADH dehydrogenase subunit 4 [Pachyhynobius shangchengensis] Length = 459 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/364 (34%), Positives = 212/364 (58%), Gaps = 16/364 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +LGVD IS L++LT +L P IL+S ++ N R Y+ ++L++ ++ AF + Sbjct: 53 NKYLGVDFISSPLLILTCWLLPMMILASQNHLKNNPENRQRMYISMLIILQTSLMLAFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 113 TEVIMFYIAFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIL---QN 169 Query: 191 TSSIIDLYAMS-KFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 TS + L+ + P +S + W W+A +F +K+P++ H WL AHV+AP AGS Sbjct: 170 TSGSLSLFLLELNNPLKLTTYSDKIW-WVACLMAFLVKMPLYGVHLWLSKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL+ + P + ++L II ++ M QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGILRISIVLTPLSXELSYPFVI-MALWGIIMTGMICMRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++H G V GA+ M+SHG++SSALF + Y+R H+R + G Sbjct: 288 YSSVSHXGLVIAATLIQTPWSFSGAIILMISHGMISSALFCLANMNYERTHSRTLLLMRG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P ++ ++NM LP + E ++++S+F SN ++ G +++A Y+ Sbjct: 348 AQAMLPLMTTWWLLTNLSNMALPPSLNLWAELIIMVSLFNWSNWTILITGIGTLITASYT 407 Query: 425 LWLY 428 L+++ Sbjct: 408 LYMF 411 >gi|46917237|dbj|BAD18028.1| NADH dehydrogenase subunits 4 [Leiognathus pan] Length = 460 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 200/364 (54%), Gaps = 10/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + R Y+ + L+ ++I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQHHMAPEPLTRQRTYITLLISLQVLLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++V+ T S Sbjct: 117 MMFYITFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLLSSLPLLVALLVLQNTTGTLS 176 Query: 194 IIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L S+ P F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 FLTLQFNSQMPLTSFTDKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L L PL Q P I L+L +I + + Q+D+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRILPLLEPLTKQLSYPFIL-LALWGMIMTGSICLRQSDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G GA+ M++HGL SSALF Y+R H R + GL P Sbjct: 295 MGLVVAGALLQTPWSFSGALILMIAHGLTSSALFCLANTNYERTHNRTMLLTRGLQTAFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A + ++AN+ LP +GE +VI S+F + +L G +++A YSL+++ Sbjct: 355 LMATWWFLLSLANLALPPLPNLMGELMVISSLFNWTPWTLILTGAGTLITAAYSLYMFLT 414 Query: 431 VVFG 434 G Sbjct: 415 TQRG 418 >gi|115345049|emb|CAJ57088.1| NADH dehydrogenase subunit 4 [Phoca vitulina] Length = 459 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 207/381 (54%), Gaps = 11/381 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLFIQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +I L+A P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 MIQLWA-QPLPSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL + + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITVLLSPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQVLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYS+++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYSMYMLTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERC 453 G ++ +K RE Sbjct: 416 RG-KYTYHIKNIKPSFTRENA 435 >gi|326535861|ref|YP_004300310.1| NADH dehydrogenase subunit 4 [Ostrea denselamellosa] gi|291576074|gb|ADE18739.1| NADH dehydrogenase subunit 4 [Ostrea denselamellosa] Length = 449 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 135/393 (34%), Positives = 215/393 (54%), Gaps = 16/393 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSS--WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFY 138 VD S+ L+ LT ++ I++S +++ N+ + ++L +++ F+ +L+FY Sbjct: 57 VDVFSMSLISLTFWVCGISIMASGAMSTLRGNYLSFCWLTVLLSLLLVMCFMVNSLLVFY 116 Query: 139 IFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL 197 I FE++LIP+ VII +WG ERI A YT GS +L +V+M E K + Sbjct: 117 ILFESTLIPLVVIIALWGQQPERISAVRYISAYTVGGSFPLLVVLVLM--ESKMGTSFFW 174 Query: 198 YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 + +K F ++W W F F +K+P +P HTWLP AHVQAP GSV LAGI+LK+GGY Sbjct: 175 FVSAKMQF--EWWFWAMCFLGFLVKLPAYPVHTWLPKAHVQAPVGGSVVLAGILLKLGGY 232 Query: 258 GCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 G R ++ F + F LS+ +YA+++ Q+D+KKL+AYSS++HM + IG Sbjct: 233 GIFRLMMA-FSYGLEAFGLFAVSLSVFGSLYAAMMCACQSDVKKLVAYSSVSHMAFPIIG 291 Query: 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMM 377 +FS + GV A ++SHG +SS LF G+ + TR++ G+ +P + + Sbjct: 292 LFSCTEVGVSSAFIMLVSHGFISSGLFVLCGISSELTSTRNLSLMSGVCRAVPILGFMWL 351 Query: 378 VFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSK 437 VF M+N+G+P FI E L +++ V V+ + +V+S +YS LY ++ G Sbjct: 352 VFIMSNLGVPPCPSFISEVLTVVAASSMGPYVFVMLALYLVVSGVYSFSLYCQLTHGSQV 411 Query: 438 CEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 E MV P +L++ F YP+ Sbjct: 412 GEGCMSFD--------MVSPRDMLSLLFLFYPL 436 >gi|47589046|gb|AAT36045.1| NADH dehydrogenase subunit 4 [Lepilemur seali] gi|47589075|gb|AAT36049.1| NADH dehydrogenase subunit 4 [Lepilemur seali] gi|47589100|gb|AAT36053.1| NADH dehydrogenase subunit 4 [Lepilemur seali] gi|47589152|gb|AAT36061.1| NADH dehydrogenase subunit 4 [Lepilemur seali] Length = 459 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 130/402 (32%), Positives = 209/402 (51%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKEPWERKKHFLFTLISLQLFLIMTFTTTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYTGTLNLFMMTYWSQEMPNSWSSSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM VT+ I GA M++ GL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVTVAILIQTPWSFMGATALMIARGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN ++ ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIIMTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G S L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGKSSYHTHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|14587507|gb|AAK70538.1|AF224621_4 NADH dehydrogenase subunit 4 [Mirza coquereli] gi|14587514|gb|AAK70542.1|AF224622_4 NADH dehydrogenase subunit 4 [Mirza coquereli] gi|14587521|gb|AAK70546.1|AF224623_4 NADH dehydrogenase subunit 4 [Mirza coquereli] gi|209447633|gb|ACI47105.1| NADH dehydrogenase subunit 4 [Mirza zaza] Length = 459 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 128/365 (35%), Positives = 197/365 (53%), Gaps = 12/365 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K Q + Y+ + L+ +I F + ++++F Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESQARKKLYLSMLVSLQMFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYI--QNSLGSLNF 176 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L F W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LTMTMWFQEMSNLWYNNMLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I L L ++ S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPLTKSMSYPFIL-LCLWGMVMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIMAILIQTPWSFMGATALMMAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP IGE VIM+ F SN +L ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNITIILTGLNMLITALYSLYMLTTTQ 415 Query: 433 FGVSK 437 G S Sbjct: 416 RGKST 420 >gi|16519242|gb|AAL25139.1|AF224514_4 NADH dehydrogenase subunit 4 [Eulemur mongoz] gi|16519257|gb|AAL25151.1|AF224517_4 NADH dehydrogenase subunit 4 [Eulemur mongoz] gi|29893247|gb|AAP06805.1|AF224512_4 NADH dehydrogenase subunit 4 [Eulemur mongoz] gi|29893252|gb|AAP06809.1|AF224513_4 NADH dehydrogenase subunit 4 [Eulemur mongoz] gi|29893262|gb|AAP06817.1|AF224521_4 NADH dehydrogenase subunit 4 [Eulemur mongoz] Length = 459 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 201/353 (56%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + +E++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLMILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + + P S M W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MKYYLQEMPNSWSNNMLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL P + L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTILDPLTKHMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +GI GA M++HGL SS LF Y+R+H+R + G+ +P A Sbjct: 298 VVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 358 WWLLASLTNLALPPSINLIGELFVVMASFSWSNITIILMGLNMLITALYSLYM 410 >gi|110432445|gb|ABG73776.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] Length = 459 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 125/372 (33%), Positives = 199/372 (53%), Gaps = 28/372 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTMWLLPLTIMASQYHLTKEPSQRKKHFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVAL----------SSIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMVTYWSQEMPNSWSNSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERVHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNVTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVS 436 L++ G S Sbjct: 408 LYMLTMTQRGKS 419 >gi|295293544|gb|ADF88087.1| NADH dehydrogenase subunit 4 [Pan troglodytes troglodytes] Length = 459 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 135/395 (34%), Positives = 220/395 (55%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEXLSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + +I+ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTLGSLNIL- 177 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 356 AFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + +K RE +++ PI +L++ Sbjct: 416 WG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|222834810|ref|YP_002586799.1| NADH dehydrogenase subunit 4 [Parataeniophorus gulosus] gi|222051610|dbj|BAH15294.1| NADH dehydrogenase subunit 4 [Parataeniophorus gulosus] Length = 460 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 130/358 (36%), Positives = 202/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L++LT +L P IL+S + R Y+ +L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLILTCWLLPLMILASQNHMFVEPLNRQRMYISLLALLQVFLIMAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYIMFEATLIPTLMIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNDAGTLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L FS + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MLTLQYSKPLQFSSYTNKIW-WVGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMIMLEPLTMELCYPFIIF-ALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GAM M++HGL SSALF Y+R H+R + GL P Sbjct: 295 MGLVVGGILIQTSWGFAGAMTLMIAHGLASSALFCLANTNYERTHSRTMLLTRGLQMVFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S ++ G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPLPNLMGELMIISSLFNWSEWSLLITGSGTMITAGYSLYMF 412 >gi|126215373|ref|YP_001054785.1| NADH dehydrogenase subunit 4 [Astronotus ocellatus] gi|125625451|dbj|BAF46814.1| NADH dehydrogenase subunit 4 [Astronotus ocellatus] Length = 460 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 201/366 (54%), Gaps = 16/366 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + ++ D +S L+ LT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLALTCWLLPLMILASQHHTSSEPTNRQRMYITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++L+FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATELLMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--- 168 Query: 189 KKTSSIIDLYAMSKFPFS------IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + S + L + PF+ + W W +F +K+P++ H WLP AHV+AP A Sbjct: 169 QNGSGTLSLLTLQFTPFTHLASFADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIA 227 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K L Sbjct: 228 GSMVLAAVLLKLGGYGMMRMMIMLEPLTKELCYPFII-LALWGVIMTGSICLRQTDLKSL 286 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 287 IAYSSVSHMGLVAAGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTLVLA 346 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P + ++AN+ LP +GE ++I S+F S L G +++A Sbjct: 347 RGLQMILPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIALTGVGTLITAG 406 Query: 423 YSLWLY 428 YSL+++ Sbjct: 407 YSLYMF 412 >gi|16519277|gb|AAL25167.1|AF224546_4 NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] Length = 459 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 203/353 (57%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + +E++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLMILTMWLLPLMIMASQYHLTKESWTLKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + + P S M W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MKYYLQEMPNSWSNNMLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +GI GA M++HGL SS LF Y+R+H+R + G+ +P A Sbjct: 298 VVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 358 WWLLASLTNLALPPSINLIGELFVVMASFSWSNITIILMGLNMLITALYSLYM 410 >gi|124055158|gb|ABM89769.1| NADH dehydrogenase subunit 4 [Chamaeleo africanus] Length = 450 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/380 (33%), Positives = 210/380 (55%), Gaps = 14/380 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L +D IS L+ L+ +L P IL+S ++ R +++ L++++ A S + Sbjct: 55 YLSIDQISAPLLTLSYWLLPIAILASQNHLKYTTLTQTRMFLMCLTTLQTLLTLALSSTN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LF+I FEA+LIP +II WG ER+ A F YT S+ +L A+++M ++ Sbjct: 115 IILFFIMFEATLIPTMMIITRWGSQKERLTAGMYFMFYTLISSMPLLIALLMMNYQMDNL 174 Query: 193 SIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + L M+ F P +I W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 175 NTM-LTPMTTFKPNTIT---WLACTLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAIL 230 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + P+ L + P I ++L +I SL+ + Q D+K LIAYSS++HM Sbjct: 231 LKLGGYGMMR-ISPMLCLTKTLYYPFII-MALWGMIMTSLICLRQPDLKSLIAYSSVSHM 288 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V S + GAM M++HG+ SS LF ++Y+R HTR + G+ +P Sbjct: 289 GLVVTATLIQTPSSLNGAMILMVAHGITSSMLFCLANMMYERTHTRTLAMMQGIQTTLPL 348 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + NM +P T +GE + ++F S +L ++A+YS++++ + Sbjct: 349 MTAFWLIANLTNMAIPPTINLMGEITITTTMFNWSPPTLILTGSATTITAIYSMYMFSTI 408 Query: 432 VFGVSKCEKVQQLKDLSLRE 451 G K +K + RE Sbjct: 409 QQG--KTQKDMMISPPQTRE 426 >gi|110432810|gb|ABG74068.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] Length = 459 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 212/384 (55%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P +++S K E + ++ + L+ +++ F + ++++F Sbjct: 59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP VII WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVAL---SYIQSSMGTLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPLTKSMGYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ +++N+ LP + IGE LV M+ F SNT +L ++++A YSL++ Sbjct: 355 MSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S +Q RE ++ Sbjct: 415 QRGKSPYH-MQNFSPSLTRENTLM 437 >gi|23397376|ref|NP_694924.1| NADH dehydrogenase subunit 4 [Takifugu rubripes] gi|215979717|ref|YP_002333215.1| NADH dehydrogenase subunit 4 [Takifugu chinensis] gi|23306926|emb|CAD13217.1| NADH dehydrogenase subunit 4 [Takifugu rubripes] gi|86604628|dbj|BAE79213.1| NADH dehydrogenase subunit 4 [Takifugu rubripes] gi|215422667|dbj|BAG85505.1| NADH dehydrogenase subunit 4 [Takifugu chinensis] Length = 460 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 204/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLGQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVTLDPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMILPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|16357244|ref|NP_443342.1| NADH dehydrogenase subunit 4 [Percopsis transmontana] gi|16266998|dbj|BAB70153.1| NADH dehydrogenase subunit 4 [Percopsis transmontana] Length = 460 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 130/358 (36%), Positives = 204/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VL+ +L P +L+S K + R Y++ L+ +I AF + ++ Sbjct: 57 MATDPLSAPLLVLSCWLLPLMLLASQKHMALEPPARQRTYVLLLASLQLFLIVAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 LLFY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 LLFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTLS 176 Query: 194 IIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L + F + W W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MLTLQYLGPLKLETFGDKIW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL+ + P I L+L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRVMTVLEPLSKEMVYPFIA-LALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQTPWGFTGALTLMIAHGLASSALFCLANTTYERTHSRTMVLARGLQMLLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE ++I S+F S + G +++A YSL+L+ Sbjct: 355 LAATWWFIASLANLALPPLPNLMGEIMIITSLFNWSPWTLLCTGLGTLITAGYSLYLF 412 >gi|312233232|ref|YP_004021453.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301539|gb|ACZ69623.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301553|gb|ACZ69636.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301567|gb|ACZ69649.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301581|gb|ACZ69662.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301595|gb|ACZ69675.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301609|gb|ACZ69688.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301623|gb|ACZ69701.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301637|gb|ACZ69714.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301651|gb|ACZ69727.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301665|gb|ACZ69740.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301679|gb|ACZ69753.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301693|gb|ACZ69766.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301707|gb|ACZ69779.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301721|gb|ACZ69792.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301735|gb|ACZ69805.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301749|gb|ACZ69818.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301763|gb|ACZ69831.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301777|gb|ACZ69844.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301791|gb|ACZ69857.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301805|gb|ACZ69870.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301819|gb|ACZ69883.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301833|gb|ACZ69896.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301847|gb|ACZ69909.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301861|gb|ACZ69922.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301875|gb|ACZ69935.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301889|gb|ACZ69948.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301903|gb|ACZ69961.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301917|gb|ACZ69974.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301931|gb|ACZ69987.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301945|gb|ACZ70000.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301959|gb|ACZ70013.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301973|gb|ACZ70026.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270301987|gb|ACZ70039.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302001|gb|ACZ70052.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302015|gb|ACZ70065.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302029|gb|ACZ70078.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302043|gb|ACZ70091.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302057|gb|ACZ70104.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302071|gb|ACZ70117.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302085|gb|ACZ70130.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302099|gb|ACZ70143.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302113|gb|ACZ70156.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302127|gb|ACZ70169.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302141|gb|ACZ70182.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302155|gb|ACZ70195.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302169|gb|ACZ70208.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302183|gb|ACZ70221.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302197|gb|ACZ70234.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302211|gb|ACZ70247.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302225|gb|ACZ70260.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302239|gb|ACZ70273.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302253|gb|ACZ70286.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302267|gb|ACZ70299.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302281|gb|ACZ70312.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302295|gb|ACZ70325.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302309|gb|ACZ70338.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302323|gb|ACZ70351.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302337|gb|ACZ70364.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302351|gb|ACZ70377.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302365|gb|ACZ70390.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302379|gb|ACZ70403.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302393|gb|ACZ70416.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|270302407|gb|ACZ70429.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|310704957|gb|ADP08228.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|310704970|gb|ADP08240.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|310704984|gb|ADP08253.1| NADH dehydrogenase subunit 4 [Orcinus orca] gi|310704998|gb|ADP08266.1| NADH dehydrogenase subunit 4 [Orcinus orca] Length = 459 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 129/387 (33%), Positives = 209/387 (54%), Gaps = 21/387 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ + L++++I F ++++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLVTLQTLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YITFEATLIPTLILITRWGNQTERLNAGLYFLFYTLMGSLPLLVALTYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWTQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSSI+HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSISHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 + + GA M++HGL SS LF Y+R H+R + GL P Sbjct: 295 ALIIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL + Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGVNIVITALYSL----HM 410 Query: 432 VFGVSKCEKVQQLKDLS---LRERCMV 455 + + + + +L+ RE ++ Sbjct: 411 LIMTQRGKHTHHINNLTPTFTREHALM 437 >gi|317176365|dbj|BAJ54190.1| NADH dehydrogenase subunit 4 [Arapaima gigas] Length = 461 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L++LT +L P IL+S I R Y+ ++L+ +I AF + + Sbjct: 56 YLATDPLSTPLLILTCWLLPLMILASQNHISPEPINRQRSYITLLILLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + + Sbjct: 116 MIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLTGSLPLLVALLLLQKDLGSL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M+ +S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTMQFTKPMTFISWSDKIW-WAGCLLAFLVKMPLYGIHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L PL + P I ++L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRITSLLDPLTKELSYPFIV-MALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI + G GA+ M++HGLVSSALF Y+R H R + G+ + Sbjct: 294 HMGLVVAGILTQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHNRTLLLTRGMQIIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + +AN+ LP +GE +I+S F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFMANLANLALPPIPNLMGELFIIVSTFNWSYWTILLTGLGTLITASYSLYMF 412 >gi|110432405|gb|ABG73744.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] gi|110432410|gb|ABG73748.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] gi|110432415|gb|ABG73752.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] gi|110432420|gb|ABG73756.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] gi|110432425|gb|ABG73760.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] gi|110432450|gb|ABG73780.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] Length = 459 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 125/372 (33%), Positives = 199/372 (53%), Gaps = 28/372 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTMWLLPLTIMASQYHLTKEPSQRKKHFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVAL----------SSIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMVTYWSQEMPNSWSNSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERVHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNVTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVS 436 L++ G S Sbjct: 408 LYMLTMTQRGKS 419 >gi|295293684|gb|ADF88217.1| NADH dehydrogenase subunit 4 [Pan troglodytes troglodytes] Length = 459 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 136/402 (33%), Positives = 221/402 (54%), Gaps = 17/402 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LT +L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSLPFSSDPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ Sbjct: 112 ATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTL 171 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + +I+ L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 GSLNIL-LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSM 229 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAY Sbjct: 230 VLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HM V I A+ M++HGL SS LF Y+R H+R + GL Sbjct: 289 SSVSHMALVVTAILIQTPWSFTSAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGL 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL Sbjct: 349 QTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSL 408 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +++ +G S + +K RE +++ PI +L++ Sbjct: 409 YMFTTTQWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|261866659|ref|YP_003264311.1| NADH dehydrogenase subunit 4 [Parastichopus nigripunctatus] gi|261399834|dbj|BAI45148.1| NADH dehydrogenase subunit 4 [Parastichopus nigripunctatus] Length = 456 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 142/399 (35%), Positives = 211/399 (52%), Gaps = 48/399 (12%) Query: 53 SVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 +V + G SS+ F + L VD +S L++L+ +L P C L+ I+ N Sbjct: 39 TVNNSGSSSWS----------FLKHSLAVDSLSAPLIILSCWLAPLCFLAQ-NVIKGNSG 87 Query: 113 EYMIAFLVLESMVI----GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKF 167 FL + +I F SL++L F+I FEA+LIP V+I WG + ER+ A F Sbjct: 88 SLQNGFLAITCSIIFFLLLTFSSLNILSFFICFEATLIPTLVLITRWGANVERLQAGTYF 147 Query: 168 FLYTFFGSIFMLFAIVVMCWEKKT-----SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 YT FGS+ +L +IV++ T S I+ L + F FSI W W+ +F +K Sbjct: 148 LFYTLFGSLPLLVSIVLISQTTSTLMIPISEIVSLQG-NTF-FSINIW-WVITIVAFLVK 204 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +P++ FH WLP AHV+AP AGS+ LA I+LK+GGYG IR + YF V + Sbjct: 205 MPVYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGIIRM--------NAYFPDVTTLSA 256 Query: 283 LIAII--YASLVSMV----QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSH 336 ++ +I + +L++ + QTD+K LIAYSS+ HM V G + GA+ M++H Sbjct: 257 ILTVICCWGALITSILCTRQTDLKALIAYSSVGHMSLVAAGTIVFSDWTISGAIMLMIAH 316 Query: 337 GLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF-----TMANMGLPGTSG 391 GLVSSALF ++Y+R HTR+IF G + V++ F AN+GLP Sbjct: 317 GLVSSALFALANILYERTHTRNIFITRGF-----KMVTVLLPFWWLISCAANLGLPPLPN 371 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 IGE +I + + +A + V A+YSL +Y+ Sbjct: 372 LIGELYIITGIISWTIFLAPILGVATVFGAIYSLLIYQN 410 >gi|221145403|ref|YP_002519621.1| NADH dehydrogenase subunit 4 [Pseudomonacanthus peroni] gi|219806819|dbj|BAH10469.1| NADH dehydrogenase subunit 4 [Pseudomonacanthus peroni] Length = 460 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S I EN + I+ L L+ +I AF + + Sbjct: 56 YLATDALSTPLLVLSCWLLPLMILASQNHIAPEPENRQRLYISLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 VMMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALSLLYVSTGTL 175 Query: 193 SIIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILQYSEPLHLSGWADKFW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLIILDPLTKELSYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQTIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+ S L G +++A YSL+++ Sbjct: 354 PLMATWWFISSLANLALPPLPNLMGELMIITSLLNWSWWTIALTGLGTLITAGYSLYMF 412 >gi|325511636|gb|ADZ22970.1| NADH dehydrogenase subunit 4 [Feresa attenuata] gi|325511650|gb|ADZ22983.1| NADH dehydrogenase subunit 4 [Feresa attenuata] Length = 459 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 128/384 (33%), Positives = 209/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L++++I F + ++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLIMLQTLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YITFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALMYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMVMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGANIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|188011135|ref|YP_001905883.1| NADH dehydrogenase subunit 4 [Chionodraco myersi] gi|110628430|gb|ABG79693.1| NADH dehydrogenase subunit 4 [Chionodraco myersi] Length = 460 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+ LT +L P IL+S + + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLALTCWLLPLMILASQHHMSDEPLNRQRTYLTLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 + +FY+ FEA+L+P +II WG +ER+ A F YT S+ +L A++++ T Sbjct: 116 LTMFYVMFEATLLPTLMIITRWGNQAERLNAGMYFLFYTLASSLPLLVALLILQNTSGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L MS + + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYMSPMGLTTHADKLW-WVGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GG+G +R +L L PL + P I F +L I+ A + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGFGMMRMMLVLEPLTKEMLYPFIVF-ALWGIVMAGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R+H+R I GL + Sbjct: 294 HMGLVVAGILVQTPWGFAGALILMIAHGLTSSALFCLANTNYERIHSRSILLARGLQVVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P +MAN+ LP +GE ++I S+ S L G++++A YS++++ Sbjct: 354 PLMTTWWFFASMANLALPPLPNLMGELMIITSLIGWSYWTLALTGTGMLITASYSMYMF 412 >gi|177543324|gb|ACB73053.1| NADH dehydrogenase subunit 4 [Colobus satanas satanas] Length = 459 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 135/410 (32%), Positives = 216/410 (52%), Gaps = 17/410 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFL 130 CS HL D ++ L++LT +L P I++S + + Y+ + L+ +I F+ Sbjct: 52 CSTHLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPPRKKLYVSMMIFLQITLIMTFM 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L ++ + + Sbjct: 112 ATELILFYILFETTLIPTLIIITRWGSQAERLNAGTYFLFYTLTGSLPLLIMLLYIYNDL 171 Query: 190 KTSSI--IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + +I + L A +W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLNIMLLTLTAQELTNTWSHNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L PL ++Y A LSL +I S + + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMRLTSILDPL-TEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V + + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVIVASLIQTPWSLTGAIILMVAHGLTSSMLFCLANSNYERTHSRIMMLSRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + N+ LP T +GE LV+ + F S+ +L ++++ALYSL + Sbjct: 351 LLPLMAFWWFTANLTNLALPPTINLVGELLVVATSFSWSHITIMLTGLNMLITALYSLHM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT----VFFGIYP 469 Y G+ +K RE +++ PI +L+ V G+ P Sbjct: 411 YVTTQRGL-LTHHATSIKPSFTRENTLMFMHLSPIILLSLNPNVIMGLTP 459 >gi|28268835|gb|AAO37917.1|AF224577_4 NADH dehydrogenase subunit 4 [Hapalemur griseus alaotrensis] Length = 458 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 200/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ +I F + +++ F Sbjct: 58 DSLSSPLVILTMWLLPLMIMASQHHLTKEPWTLKKLYLSMLISLQMFLIMTFTATELIYF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 118 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI---QNYLGSLN 174 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L MS + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 175 LSTMSLCFQELPNSWSNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 234 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 235 LKLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 293 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 294 ALVIVAILIQTPWSFMGATVLMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 353 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE LVIM+ F SN +L +++ALYSL++ Sbjct: 354 MATWWLFASLTNLALPPSINLIGELLVIMTSFSWSNITIILMGLNTLITALYSLYMLTTT 413 Query: 432 VFG 434 G Sbjct: 414 QRG 416 >gi|295065702|ref|YP_003587643.1| NADH dehydrogenase subunit 4 [Thunnus albacares] gi|294847942|gb|ADF43960.1| NADH dehydrogenase subunit 4 [Thunnus albacares] Length = 460 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 205/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT L P IL+S + QE R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCXLLPLMILASQNHTAQEPINRQRMYITLLTSLQFFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L YA + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYAPPLQLMSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPXAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMXIMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S+ L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGEIMILTSLFNWSHWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|95104571|gb|ABF51541.1| NADH dehydrogenase subunit 4 [Colobus guereza] Length = 459 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 141/447 (31%), Positives = 235/447 (52%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FE +LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFETTLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L + S Y Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTTHKLTSTWSHYL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRTMMLPRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHVTIMLTGLNMLITALYSLYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E +++ PI +L+ + G+ P Sbjct: 433 ENMLMFMHLSPIILLSLNPNIIMGLTP 459 >gi|215979549|ref|YP_002333059.1| NADH dehydrogenase subunit 4 [Takifugu poecilonotus] gi|215422737|dbj|BAG85570.1| NADH dehydrogenase subunit 4 [Takifugu poecilonotus] Length = 460 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 204/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLGQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ + PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVTMDPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|16357356|ref|NP_443667.1| NADH dehydrogenase subunit 4 [Mastacembelus favus] gi|16267264|dbj|BAB70387.1| NADH dehydrogenase subunit 4 [Mastacembelus favus] Length = 460 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 132/382 (34%), Positives = 212/382 (55%), Gaps = 11/382 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWK--SIQENFRE--YMIAFLVLESMVIGAFLSLDM 134 + +D +S L++LT +LTP IL+S S + R+ Y+ + L+ +I AF + ++ Sbjct: 57 MALDPLSTPLLILTCWLTPLMILASQNHMSTEPASRQRIYITLLISLQFFLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + S Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQNNTGSLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L ++ PF+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLILQYSDPLNLTPFASKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL + P I L+L ++ + + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRITIMLDPLTKELSYPFII-LALWGVVMTASICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I + G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVIAAILTQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILTRGLQIILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + ++AN+ LP +GE +I S+F S +L G +++A YSL+++ Sbjct: 355 LMTMWWFTASLANLALPPLPNLMGELTIITSLFGWSWWTLLLTGAGTLITANYSLYMFLT 414 Query: 431 VVFGVSKCEKVQQLKDLSLRER 452 G + L RE Sbjct: 415 TQRG-PLPHHITHLDPTHSREH 435 >gi|294679539|gb|ADF29580.1| NADH dehydrogenase subunit 4 [Globicephala melas] gi|326370260|gb|ADZ56100.1| NADH dehydrogenase subunit 4 [Globicephala melas] gi|326370274|gb|ADZ56113.1| NADH dehydrogenase subunit 4 [Globicephala melas] Length = 459 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 206/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ + L+ ++I F + ++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLITLQILLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YITFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALMYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGMNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|16357258|ref|NP_443355.1| NADH dehydrogenase subunit 4 [Coelorinchus kishinouyei] gi|16267013|dbj|BAB70166.1| NADH dehydrogenase subunit 4 [Coelorinchus kishinouyei] Length = 460 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 124/361 (34%), Positives = 202/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 ++ + D +S L++L+ +L P IL+S + R +++ L+S +I AF + Sbjct: 54 NFFIATDPLSTPLLILSCWLLPLMILASQNHLASEPLFRQRSFIVVITTLQSFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 + ++FYI FEA+LIP ++I WG ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEFIMFYIMFEATLIPTLLVITRWGNQMERLNAGTYFLFYTLAGSLPLLIALMMIQNSME 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L +S + ++W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLMLQYSKPLSVLSLADKFW-WAACMIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL+ + P + L+L +I + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRLMVILGPLSKEVIYPFMI-LALWGVIMTGSACLRQTDLKALIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALTLMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P +AN+ LP +GE ++ S+ S +L G +++A YSL++ Sbjct: 352 ALPLMTSWWFFTCLANLALPPLPNLMGELAILTSLLAWSPWTLILTGGGTLITATYSLYV 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|25057811|ref|NP_740032.1| NADH dehydrogenase subunit 4 [Satyrichthys amiscus] gi|25006022|dbj|BAC23640.1| NADH dehydrogenase subunit 4 [Satyrichthys amiscus] Length = 460 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 132/383 (34%), Positives = 206/383 (53%), Gaps = 11/383 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDTLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQVFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L F + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSDPFQLTTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIVVMLDPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFAGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + ++AN+ LP +GE +++ S+F S L G++++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIVTSLFNWSWWTLALTGGGMLITASYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRER 452 G E + L RE Sbjct: 414 MTQRG-PLPEHILALNPSHTREH 435 >gi|327492607|ref|YP_004347505.1| NADH dehydrogenase subunit 4 [Lagocephalus sceleratus] gi|327392556|dbj|BAK09986.1| NADH dehydrogenase subunit 4 [Lagocephalus sceleratus] Length = 460 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 135/361 (37%), Positives = 207/361 (57%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQE--NFREYMIAFLV-LESMVIGAFLS 131 S++L D +S L++L+ +L P +L+S + QE N + I+ L L+ ++ AF + Sbjct: 54 SFYLATDPLSTPLLILSCWLLPLMVLASQNHTAQEPINRQRMYISLLASLQFFLVLAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVV-MCWEK 189 +M++FY+ FEA+LIP V+I WG +ER+ A F YT GS+ +L A+++ Sbjct: 114 TEMMMFYVMFEATLIPTLVLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTTG 173 Query: 190 KTSSIIDLYAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S + L+ P ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLTLLHTTQAHPTTYADKLW-WAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I L+L II S + M QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRVLVCLEPLTKELSYPFIV-LALWGIIMTSTICMRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQA 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + ++AN+ LP +GE ++I S+F S L G +L+A YSL++ Sbjct: 352 ALPLMAAWWFIASLANLALPPIPNLMGELMIITSLFNWSWWTIALTGLGTLLTASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|179759667|ref|YP_001816865.1| NADH dehydrogenase subunit 4 [Arapaima gigas] gi|146221466|gb|ABQ11864.1| NADH dehydrogenase subunit 4 [Arapaima gigas] Length = 463 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L++LT +L P IL+S I R Y+ ++L+ +I AF + + Sbjct: 59 YLATDPLSTPLLILTCWLLPLMILASQNHISPEPINRQRSYITLLILLQFFLILAFSATE 118 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + + Sbjct: 119 MIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLTGSLPLLVALLLLQKDLGSL 178 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M+ +S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 179 SMLTMQFTKPMTFISWSDKIW-WAGCLLAFLVKMPLYGIHLWLPKAHVEAPIAGSMVLAA 237 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L PL + P I ++L II + + QTD+K LIAYSS++ Sbjct: 238 VLLKLGGYGMMRITSLLDPLTKELSYPFIV-MALWGIIMTGSICLRQTDLKSLIAYSSVS 296 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI + G GA+ M++HGLVSSALF Y+R H R + G+ + Sbjct: 297 HMGLVVAGILTQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHNRTLLLTRGMQIIL 356 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + +AN+ LP +GE +I+S F S +L G +++A YSL+++ Sbjct: 357 PLMTTWWFMANLANLALPPIPNLMGELFIIVSTFNWSYWTILLTGLGTLITASYSLYMF 415 >gi|51891116|gb|AAU12942.1| NADH dehydrogenase subunit 4 [Pachyhynobius shangchengensis] Length = 458 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 125/364 (34%), Positives = 212/364 (58%), Gaps = 16/364 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +LGVD IS L++LT +L P IL+S ++ N R Y+ ++L++ ++ AF + Sbjct: 53 NKYLGVDFISSPLLILTCWLLPMMILASQNHLKNNPENRQRMYISMLIILQTSLMLAFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 113 TEVIMFYIAFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLIL---QN 169 Query: 191 TSSIIDLYAMS-KFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 TS + L+ + P +S + W W+A +F +K+P++ H WL AHV+AP AGS Sbjct: 170 TSGSLSLFLLELNNPLKLTTYSDKIW-WVACLMAFLVKMPLYGVHLWLSKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL+ + P + ++L II ++ M QTD+K LIA Sbjct: 229 MILAAVLLKLGGYGILRISIVLTPLSXELSYPFVI-MALWGIIMTGMICMRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++H G V GA+ M+SHG++SSALF + Y+R H+R + G Sbjct: 288 YSSVSHXGLVIAATLIQTPWSFSGAIILMISHGMISSALFCLANMNYERTHSRTLLLMRG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +P ++ ++NM LP + E ++++S+F SN ++ G +++A Y+ Sbjct: 348 AQAMLPLMTTWWLLTNLSNMALPPSLNLWAELIIMVSLFNWSNWTILITGIGTLITASYT 407 Query: 425 LWLY 428 L+++ Sbjct: 408 LYMF 411 >gi|83779495|gb|ABC47557.1| NADH dehydrogenase subunit 4 [Vampyrodes caraccioli] Length = 459 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 199/363 (54%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + Y+ ++L+ +I F + ++++F Sbjct: 59 DPLSTPLIMLTLWLLPLMIIASQSHLANEHPTRKKSYITMLILLQIFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLLPTLIIITRWGNQAERLNAGLYFLFYTLVGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L F IQYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 LTGTLNF-LLIQYWTMPLPTSWSTTLMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITILLEPLTDSMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+M++F SN +L ++L+ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMAMFSWSNMSLILLGLNIILTALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|110432440|gb|ABG73772.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] Length = 459 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 125/372 (33%), Positives = 199/372 (53%), Gaps = 28/372 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTMWLLPLTIMASQYHLTKEPSQRKKHFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVAL----------SSIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMVTYWSQEMPNSWSNSLMWMACVMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERVHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNVTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVS 436 L++ G S Sbjct: 408 LYMLTMTQRGKS 419 >gi|156072968|gb|ABU45801.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albifrons] Length = 459 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQSYMGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNSILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|229328231|ref|YP_002860240.1| NADH dehydrogenase subunit 4 [Crassostrea ariakensis] gi|187762854|gb|ACD35470.1| NADH dehydrogenase subunit 4 [Crassostrea ariakensis] Length = 449 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 140/410 (34%), Positives = 217/410 (52%), Gaps = 15/410 (3%) Query: 51 VWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCIL--SSWKSIQ 108 VWS F + + + FC VD S L+ LT ++ I+ S+ +++ Sbjct: 32 VWSAFSLTYWGGSGVSWESLSELFC-----VDIYSSSLISLTLWVCGISIMVSSALVNLR 86 Query: 109 ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKF 167 F + + +L M++ F+ + +FY+ FE++L+PM IIG+WGG ER+ + Sbjct: 87 GTFNLFWVLVTLLAFMLVQCFMVNTLAMFYVLFESTLVPMISIIGIWGGQFERVPSIQYI 146 Query: 168 FLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM-WIAFFCSFAIKIPMF 226 YT GS +L M E + S + SK F+ W+ W A F F IK+P + Sbjct: 147 AAYTVGGSFPLLLVFTAM--ELHSGSSFMWFICSKMDFN---WIFWTACFLGFLIKLPAY 201 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 PFHTWLP AHVQAP GSV LAGI+LK+GGYG R ++ LF + F + LSL Sbjct: 202 PFHTWLPKAHVQAPVGGSVILAGILLKLGGYGITRLMM-LFSYTLESFGIFVIVLSLYGS 260 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 +Y +++ + Q+D+KKLIA+SS+ HM + IG+FS + G+ GA ++SHG +SS LF Sbjct: 261 VYGAVMCIRQSDVKKLIAFSSVPHMAFPVIGLFSCTEVGLVGAYIMLVSHGFISSGLFVL 320 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 G+ + +H+R I A V +P + +V MAN+G+P I E L ++S Sbjct: 321 CGISSELVHSRKIKAMNEGVRAIPSLGFIWLVMIMANLGVPPCPVIISEVLSVVSAIALW 380 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 V V + VLS +YS LY ++ K + +++L++ +Y Sbjct: 381 PWVFVPLALYFVLSGVYSFSLYCQLTTSKVKHKTEVLFNEVTLKDMKAMY 430 >gi|95104563|gb|ABF51535.1| NADH dehydrogenase subunit 4 [Colobus guereza matschiei] Length = 459 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 141/447 (31%), Positives = 235/447 (52%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FE +LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFETTLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Y Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTTQKLTSTWSHYL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRTMMLSRGLQTLLPLMAFWWFMANFTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHVTIMLTGLNMLITALYSLYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E +++ PI +L+ + G+ P Sbjct: 433 ENMLMFMHLSPIILLSLNPNIIMGLTP 459 >gi|153124375|ref|YP_001382104.1| NADH dehydrogenase subunit 4 [Martes melampus] gi|152962757|dbj|BAF73992.1| NADH dehydrogenase subunit 4 [Martes melampus] Length = 459 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 127/389 (32%), Positives = 208/389 (53%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L++LTT+L P +++S + + + Y+ ++L+ ++I F + ++++ Sbjct: 58 TDSLSAPLLMLTTWLLPLMLMASQHHLSKETLTRKKLYITMLVMLQLLLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T +++ Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLWLQSNLGTLNLL 177 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 178 ----------VIQYWTQPLLSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL P + LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITILLNPLTDSMAYPFMM-LSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQSPWSYMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+M+ F SN +L + ++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIILMGINITITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G ++ +K RE Sbjct: 407 SLYMLITTQRG-KYTHHIKNIKPSFTREN 434 >gi|302320282|gb|ADL15955.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 137/402 (34%), Positives = 221/402 (54%), Gaps = 17/402 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LTT+L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSPTFSSDPLTAPLLMLTTWLLPLTIMASQRHLSSEPLSRKKLYLSMLISLQISLIMTFT 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ Sbjct: 112 ATELIMFYIFFETTLIPTLAIITRWGSQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTL 171 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + +I+ L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 GSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSM 229 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAY Sbjct: 230 VLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SSI+HM V I GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 289 SSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGL 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ ++AN+ LP T +GE V+++ F SN +L ++++ALYSL Sbjct: 349 QTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWSNITLLLTGLNMLVTALYSL 408 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +++ +G S + +K RE +++ PI +L++ Sbjct: 409 YMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLSL 449 >gi|288903566|ref|YP_003434318.1| NADH dehydrogenase subunit 4 [Cheilinus undulatus] gi|283048655|gb|ADB06519.1| NADH dehydrogenase subunit 4 [Cheilinus undulatus] Length = 460 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 16/373 (4%) Query: 66 EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVL 121 E W + S + D +S L+VL+ +L P IL+S + R Y+ ++L Sbjct: 46 ETTGWTN--LSSTMATDPLSSPLLVLSCWLLPLMILASQNHMSSEPLHRQRLYISLMIIL 103 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLF 180 +S +I AF + ++++FYI FEA+LIP +I WG +ER+ A F YT GS+ +L Sbjct: 104 QSFLILAFSATEVIMFYIMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLV 163 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 A++++ + T S+ L P I W W A +F +K+P++ H WLP A Sbjct: 164 ALLLL--QNATGSLSMLTLQYTKPLLISSYASNLW-WAACLIAFLVKMPLYGVHLWLPKA 220 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP AGS+ LA ++LK+GGYG +R L+ L PL + P I L+L +I + + Sbjct: 221 HVEAPVAGSMILAAVLLKLGGYGMMRVLVLLDPLTKELSYPFII-LALWGVIMTGSICLR 279 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTD+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H Sbjct: 280 QTDLKSLIAYSSVSHMGLVIGGILIQTPWGFTGALVLMIAHGLTSSALFCLANTNYERTH 339 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 +R + GL +P A + ++AN+ LP + E +VI S+F S L Sbjct: 340 SRTMVLARGLQMALPLMATWWFIASLANLALPPLPNLMAELMVITSLFNWSWWTLALTGM 399 Query: 416 GVVLSALYSLWLY 428 G +++A YSL+++ Sbjct: 400 GTLITAAYSLYMF 412 >gi|221145543|ref|YP_002519816.1| NADH dehydrogenase subunit 4 [Thylacinus cynocephalus] gi|218135484|gb|ACK57334.1| NADH dehydrogenase subunit 4 [Thylacinus cynocephalus] gi|218135498|gb|ACK57347.1| NADH dehydrogenase subunit 4 [Thylacinus cynocephalus] Length = 459 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 204/371 (54%), Gaps = 15/371 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L+VL+ +L P I++S + + + Y+ ++L+ +I AF S ++++ Sbjct: 58 IDSLSSPLIVLSCWLLPLMIIASQNHLMDEPSNRKKTYLTMLIILQLSLIMAFSSSELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS--- 192 FYI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + + K S Sbjct: 118 FYIMFESTLIPTLIIITRWGNQNERLNAGIYFIFYTLTGSLPLLVALIYL-YHKMGSLHM 176 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++ + M+ +W A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 PMMSIMNMTLDSSMSSSLLWYACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R PL + P + LS+ ++ S + M QTD+K LIAYSS++HM Sbjct: 237 KLGGYGIMRMTAFTEPLTTNLCYPFMT-LSMWGMVMTSSICMRQTDLKALIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + A M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAALMQTPMSFMAATTLMIAHGLTSSMLFCLANSNYERIHSRTLLLARGLQTVLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ ++AN+ LP + IGE +VIM+ F SN +L V++ALYS+++ Sbjct: 356 CTWWLIASLANLALPPSINLIGELMVIMTSFSWSNMTIILLGINTVITALYSMYM----- 410 Query: 433 FGVSKCEKVQQ 443 F S+ K+ Q Sbjct: 411 FTTSQRGKLSQ 421 >gi|16519272|gb|AAL25163.1|AF224525_4 NADH dehydrogenase subunit 4 [Eulemur rubriventer] gi|24817363|gb|AAN64720.1|AF224527_4 NADH dehydrogenase subunit 4 [Eulemur rubriventer] gi|156073003|gb|ABU45829.1| NADH dehydrogenase subunit 4 [Eulemur rubriventer] Length = 459 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 124/356 (34%), Positives = 204/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + +E++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLMILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + +++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNHLGSLNMLT 178 Query: 197 L-YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PLA P + L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPLAKHMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|32526824|ref|NP_871783.1| NADH dehydrogenase subunit 4 [Mogera wogura] gi|32469175|dbj|BAC78870.1| NADH dehydrogenase subunit 4 [Mogera wogura] Length = 459 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 200/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S + + Y+ ++L+ ++ F + +++LF Sbjct: 59 DSLSTPLLILTTWLLPLMLMASQFHLSNEHITRKKLYISMLILLQIFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+ + + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGMYFLFYTLVGSLPLLVALTYL---QNTMGSLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L M + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LTIMQLLSTPLPNKWSSSLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMVLSPYTS-FMAYPFLALSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVITAIMIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T IGE LV++S F SN +L + ++ALYSL++ + Sbjct: 355 MAAWWLMASLTNLALPPTINLIGELLVMLSSFSWSNFTMILMGLNMTITALYSLYMLIQT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|25057268|ref|NP_739876.1| NADH dehydrogenase subunit 4 [Anoplogaster cornuta] gi|25005799|dbj|BAC23433.1| NADH dehydrogenase subunit 4 [Anoplogaster cornuta] Length = 460 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHMGVEPINRQRTYLSLLTSLQVFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNETGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSKPLELLTYGDKLW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKALIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALVLMIAHGLASSALFCLANTNYERTHSRTMVLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIIASLFNWSWWTIFLTGAGTLITAGYSLYMF 412 >gi|328671391|gb|AEB26560.1| NADH dehydrogenase subunit 4 [Nannoperca australis] Length = 460 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FREYMIAFLV--LESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R+ M L+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQSHTASEPINRQRMFIMLLTSLQIFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEILMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNMG 173 Query: 191 TSSIIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L FP + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSDPFPLLTNADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMTSWWFIASLANLALPPFPNLMGELMIITSLFSWSWWTIALTGTGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|110432735|gb|ABG74008.1| NADH dehydrogenase subunit 4 [Lepilemur aeeclis] gi|110432740|gb|ABG74012.1| NADH dehydrogenase subunit 4 [Lepilemur aeeclis] gi|110432750|gb|ABG74020.1| NADH dehydrogenase subunit 4 [Lepilemur aeeclis] gi|110432755|gb|ABG74024.1| NADH dehydrogenase subunit 4 [Lepilemur aeeclis] Length = 459 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 129/396 (32%), Positives = 212/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++L +L P +++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILAMWLFPLTVMASQYHLAKEPWERKKHFLFTLISLQLFLILTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALSSI---QNYMGTLN 175 Query: 197 LYAMSKFPFS-IQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + I W MW+A +F IK+P++ FH WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWTQELINSWSSNLMWVACIMAFMIKMPLYGFHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITIILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + +GE + M+ F SN +L ++++A YSL++ Sbjct: 355 MSTWWLLASLTNLALPPSINLVGELFITMASFSWSNMTIILTGLNMLITATYSLYMLMMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G K RE + V+P+ +LT+ Sbjct: 415 QRG-KPPYHAHNFKPSLTRENTLMSMHVFPLLLLTL 449 >gi|208433853|ref|YP_002265558.1| NADH dehydrogenase subunit 4 [Cantherhines pardalis] gi|207367041|dbj|BAG72017.1| NADH dehydrogenase subunit 4 [Cantherhines pardalis] Length = 460 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L++L+ +L P IL+S + EN + I+ L L+ +I AF + + Sbjct: 56 YLATDALSTPLLILSCWLLPLMILASQNHVAPEPENRQRLYISLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 VMMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALSLLYVSTGTL 175 Query: 193 SIIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILQYSEPLHLSGLADKFW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLMILDPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQTIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+ S L G +++A YSL+++ Sbjct: 354 PLMATWWFISSLANLALPPLPNLMGELMIITSLLNWSWWTIALTGLGTLITAGYSLYMF 412 >gi|24817442|gb|AAN64776.1|AF224581_4 NADH dehydrogenase subunit 4 [Hapalemur aureus] gi|24817451|gb|AAN64780.1|AF224582_4 NADH dehydrogenase subunit 4 [Hapalemur aureus] gi|47587785|gb|AAT35860.1| NADH dehydrogenase subunit 4 [Hapalemur aureus] gi|47587807|gb|AAT35864.1| NADH dehydrogenase subunit 4 [Hapalemur aureus] Length = 458 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 203/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S LVVLT +L P I++S + + ++ I+ L+ L+ +++ F + +++LF Sbjct: 58 DPLSSPLVVLTMWLLPLMIMASQHHLTKEPWTLKKLYISMLISLQMLLVMTFTATELILF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 118 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYI---QNYMGSLN 174 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L M+ + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 175 LSTMNLCFQELPNSWSNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 234 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 235 LKLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 293 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 294 ALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 353 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 354 MATWWLFASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSLYMLTTT 413 Query: 432 VFG 434 G Sbjct: 414 QRG 416 >gi|54112095|ref|YP_122152.1| NADH dehydrogenase subunit 4 [Zaglossus bruijni] gi|75043030|sp|Q5ZNA1|NU4M_ZAGBR RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|54019667|emb|CAG26338.1| NADH dehydrogenase subunit 4 [Zaglossus bruijni] Length = 459 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 203/364 (55%), Gaps = 14/364 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW-----KSIQENFREYMIAFLVLESMVIGAFLSLDML 135 D +S L+VL+ +L P IL+S +SI R Y+I + L+ ++ AF +++ + Sbjct: 58 TDPLSSPLLVLSCWLLPLMILASQFHLMNESINHK-RMYLILLVSLQIALLMAFSAVEFM 116 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 ++YI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 117 MYYILFETTLIPTLIIIARWGNQTERLNAGLYFLFYTLLGSLPLLVALIFT--QAQMGSL 174 Query: 195 IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 L + W +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA I Sbjct: 175 HILLLTLTPNPLLNSWSNDILWLACMMAFLVKMPLYGFHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L P+ S++ A L+ +I S + + QTD+K LIAYSSI+H Sbjct: 235 LLKLGGYGILRIIIILEPI-SKFMAYPFIILATWGMIMTSSICLRQTDLKSLIAYSSISH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 294 MGLVVAASLIQTPWGFMGATAMMIAHGLTSSMLFCLANTNYERAHSRTMVLIRGLQMVLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + ++ ++ N+GLP T I E ++I+S F SN +L V++A+YSL++ Sbjct: 354 LMSSWWLLASLTNLGLPPTINLISELMIIVSTFSWSNFTLILLGLNTVITAIYSLYMLIS 413 Query: 431 VVFG 434 V G Sbjct: 414 VQRG 417 >gi|25057855|ref|NP_740084.1| NADH dehydrogenase subunit 4 [Emmelichthys struhsakeri] gi|25006092|dbj|BAC23705.1| NADH dehydrogenase subunit 4 [Emmelichthys struhsakeri] Length = 460 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTNLEPINRQRMYITLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLYAMSK---FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSNPAHLVTYADKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMF 412 >gi|62297808|sp|Q34878|NU4M_LEMCA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|24817417|gb|AAN64756.1|AF224569_4 NADH dehydrogenase subunit 4 [Lemur catta] gi|24817422|gb|AAN64760.1|AF224570_4 NADH dehydrogenase subunit 4 [Lemur catta] Length = 459 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 203/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S LVVLT +L P I++S +++ ++ I+ L+ L+ +I F + +++LF Sbjct: 59 DSLSSPLVVLTMWLLPLMIMASQHHLKKEPWTLKKLYISMLIFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHI---QNYLGSLN 175 Query: 197 LYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + MS F W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 MLTMSFCFQELSNSWSSNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQTILPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSLYMLTTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|110432745|gb|ABG74016.1| NADH dehydrogenase subunit 4 [Lepilemur aeeclis] gi|110432760|gb|ABG74028.1| NADH dehydrogenase subunit 4 [Lepilemur aeeclis] Length = 459 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 129/396 (32%), Positives = 212/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++L +L P +++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILAMWLFPLTVMASQYHLAKEPWERKKHFLFTLISLQLFLILTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALSSI---QNYMGTLN 175 Query: 197 LYAMSKFPFS-IQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + I W MW+A +F IK+P++ FH WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWTQELINSWSSNLMWVACIMAFMIKMPLYGFHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITIILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + +GE + M+ F SN +L ++++A YSL++ Sbjct: 355 MSTWWLLASLTNLALPPSINLVGELFITMASFSWSNMTIILTGLNMLITATYSLYMLMMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G K RE + V+P+ +LT+ Sbjct: 415 QRG-KPPYHAHNFKPSLTRENTLMSMHVFPLLLLTL 449 >gi|12484229|gb|AAG54016.1|AF224599_4 NADH dehydrogenase subunit 4 [Propithecus diadema] Length = 459 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 201/359 (55%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S +++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQYHLKKEPWLRKKSYLSMLISLQMFLVMTFTASELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHL---QNTMGSLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L M+ + P S W +W A +F +K+P++ FH WLP AHV+AP AGS+ LA Sbjct: 176 LLTMNFWLKELPNS---WSSNLLWTACIMAFMVKMPLYGFHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITMALDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPSINLIGELFVMMATFSWSNISIILMGLNMLITALYSLYM 410 >gi|238694130|ref|YP_002922030.1| NADH dehydrogenase subunit 4 [Lutjanus malabaricus] gi|225639025|gb|ACN97656.1| NADH dehydrogenase subunit 4 [Lutjanus malabaricus] Length = 460 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 200/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 SPYMATDPLSTPLLVLTCWLLPLMILASQNHTTHEPMNRQRMYITLLTSLQIFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L S S + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSSPLQLSTYGDKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLVMLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|47589237|gb|AAT36077.1| NADH dehydrogenase subunit 4 [Lepilemur mitsinjoensis] gi|47589259|gb|AAT36081.1| NADH dehydrogenase subunit 4 [Lepilemur mitsinjoensis] gi|47589286|gb|AAT36085.1| NADH dehydrogenase subunit 4 [Lepilemur mitsinjoensis] Length = 459 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 130/396 (32%), Positives = 214/396 (54%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S +++ + ++ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQYHLKKEPWLRKKSFLSMLISLQMFLVMTFTASELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSSI---QNYMGTLN 175 Query: 197 LYAMSKFPFS-IQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + I W MW+A +F IK+P++ FH WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWTQELINSWSSNLMWVACIMAFMIKMPLYGFHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITIILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVVVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YSL++ Sbjct: 355 MSTWWLLASLTNLALPPSINLIGELFITMASFSWSNMTIILTGLNMLITATYSLYMLMMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G K RE + V+P+ +LT+ Sbjct: 415 QRG-KPPYHAHNFKPSLTRENTLMSMHVFPLLLLTL 449 >gi|30466112|gb|AAP33643.1|AF224594_4 NADH dehydrogenase subunit 4 [Lepilemur edwardsi] Length = 459 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 129/396 (32%), Positives = 212/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++L +L P +++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILAMWLFPLTVMASQYHLAKEPWERKKHFLFTLISLQLFLILTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALSSI---QNYMGTLN 175 Query: 197 LYAMSKFPFS-IQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + I W MW+A +F IK+P++ FH WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWTQELINSWSSNLMWVACIMAFMIKMPLYGFHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITIILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + +GE + M+ F SN +L ++++A YSL++ Sbjct: 355 MSTWWLLASLTNLALPPSINLVGELFITMASFSWSNMTIILTGLNMLITATYSLYMLMMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G K RE + V+P+ +LT+ Sbjct: 415 QRG-KPPYHAHNFKPSLTRENTLMSMHVFPLLLLTL 449 >gi|5835146|ref|NP_008208.1|ND4_10551 NADH dehydrogenase subunit 4 [Pan paniscus] gi|62510838|sp|Q9T9W6|NU4M_PANPA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|6045127|dbj|BAA85300.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188347|gb|ADA55532.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188375|gb|ADA55558.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188445|gb|ADA55623.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188473|gb|ADA55649.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188487|gb|ADA55662.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188529|gb|ADA55701.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188543|gb|ADA55714.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188557|gb|ADA55727.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188571|gb|ADA55740.1| NADH dehydrogenase subunit 4 [Pan paniscus] Length = 459 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 135/395 (34%), Positives = 220/395 (55%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPPSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + +I+ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTLGSLNIL- 177 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 356 AFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + +K RE +++ PI +L++ Sbjct: 416 WG-SLTHHINNMKPSFTRENTLMFMHLSPILLLSL 449 >gi|108793472|ref|YP_636954.1| NADH dehydrogenase subunit 4 [Anomalops katoptron] gi|25005841|dbj|BAC23472.1| NADH dehydrogenase subunit 4 [Anomalops katoptron] Length = 460 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 202/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S + + R Y+ L+ +I AF + Sbjct: 54 SPYMATDPLSTPLLVLTCWLLPLMILASQNHMNQEPNNRQRTYISLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP II WG +ER+ A F YT GS+ +L A++++ E Sbjct: 114 TEIIMFYVMFEATLIPTLFIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNETG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S+I L + + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMITLQYSKPLQLITYGDKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLDPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKALIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMVLARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGELMIITSLFSWSWWTIFLTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|221145683|ref|YP_002520031.1| NADH dehydrogenase subunit 4 [Meuschenia hippocrepis] gi|219806721|dbj|BAH10378.1| NADH dehydrogenase subunit 4 [Meuschenia hippocrepis] Length = 460 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S + EN + I L L+ +I AF + + Sbjct: 56 YLATDALSTPLLVLSCWLLPLMILASQNHMALEPENRQRLYICLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 VMMFYVMFEATLIPTLILITRWGNQTERLRAGVYFLFYTLAGSLPLLVALSLLYVSTGTL 175 Query: 193 SIIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S ++W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILQYSEPLQLSGLADEFW-WMGCMLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLTVLDPLTKEMSYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R HTR + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHTRTMVLARGLQTVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A V ++AN+ LP +GE ++I S+ S L G +++A YSL+++ Sbjct: 354 PLMATWWFVSSLANLALPPLPNLMGELMIITSLLNWSWWTIALTGAGTLITAGYSLYMF 412 >gi|47589127|gb|AAT36057.1| NADH dehydrogenase subunit 4 [Lepilemur seali] Length = 459 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 130/402 (32%), Positives = 209/402 (51%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKEPWERKKHFLFTLISLQLFLIMTFTTTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYTGTLNLFMMTYWSQEMPNSWSSSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM VT+ I GA M++ GL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVTVAILIQTPWSFMGATALMIARGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN ++ ++++A YS Sbjct: 348 LQSLLPLMSTWWLLGSLTNLALPPSINLIGELFITMATFSWSNMTIIMTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G S L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGKSSYHTHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|28268830|gb|AAO37913.1|AF224576_4 NADH dehydrogenase subunit 4 [Hapalemur griseus alaotrensis] Length = 458 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 200/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ +I F + +++ F Sbjct: 58 DSLSSPLVILTMWLLPLMIMASQHHLTKEPWTLKKLYLSMLISLQMFLIMTFTATELIYF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+V + + ++ Sbjct: 118 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALVYI---QNYLGSLN 174 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L MS + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 175 LSTMSLCFQELPNSWSNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 234 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 235 LKLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 293 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 294 ALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 353 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE LVIM+ F SN +L + ++ALYSL++ Sbjct: 354 MATWWLFASLTNLALPPSINLIGELLVIMTSFSWSNITIILMGLNMPITALYSLYMLTTT 413 Query: 432 VFG 434 G Sbjct: 414 QRG 416 >gi|322422836|ref|YP_004222621.1| NADH dehydrogenase subunit 4 [Heterocephalus glaber] gi|316891380|gb|ADU57105.1| NADH dehydrogenase subunit 4 [Heterocephalus glaber] Length = 459 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 196/361 (54%), Gaps = 24/361 (6%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV LT +L P I++S ++ + Y+ + L++++I F + +M++F Sbjct: 59 DSLSSPLVNLTVWLLPLMIIASQHHMKNEPAVRKKLYLSLLITLQALLIMTFTTSEMMMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVV----------MC 186 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ M Sbjct: 119 YILFEATLIPTLIIITRWGNQAERMKAGLYFLFYTLTGSLPLLVALTYLKNYLGSLNFML 178 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + K S ++ ++ S +W+A +F +K P++ H WLP AHV+AP AGS+ Sbjct: 179 FSYKASPLLPTWSNSM--------LWLACIMAFMVKFPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R L PL + P I LSL ++ S + + QTD+K LIAYS Sbjct: 231 LAAILLKLGGYGMMRISQLLEPLTTSMSYPFIL-LSLWGMVMTSSICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 SI+HM V I GA M++HGL SS LF Y+R H+R + GL Sbjct: 290 SISHMALVITAILIQTPWSYMGATTLMIAHGLTSSLLFCLANSNYERTHSRTMILARGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A+ ++ + N+ LP + +GE L+I S F SN +L V+++ALY+L+ Sbjct: 350 TILPLMALWWLLASFTNLALPPSINLVGELLIITSTFSWSNFTIILTGMNVLITALYTLY 409 Query: 427 L 427 + Sbjct: 410 M 410 >gi|157736015|ref|YP_001491236.1| NADH dehydrogenase subunit 4 [Zanclus cornutus] gi|139000522|dbj|BAF51747.1| NADH dehydrogenase subunit 4 [Zanclus cornutus] Length = 460 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 204/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK---SIQENFREYMIAFLV-LESMVIGAFLSLD 133 ++ D +S L++LT +L P IL+S S N + I L+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLILTCWLLPLMILASQNHTASEPANRQRTFITLLISLQIFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S + + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYASCIQLTTYADKLW-WAACLIAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVILEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQVAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLMTTWWFIGSLANLALPPLPNLMGELMIITSLFNWSWWTLALTGVGTLITAGYSLYMF 412 >gi|148922638|ref|YP_001293875.1| NADH dehydrogenase subunit 4 [Sprattus sprattus] gi|148762754|dbj|BAF64188.1| NADH dehydrogenase subunit 4 [Sprattus sprattus] Length = 460 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 134/389 (34%), Positives = 212/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ +D +S L+VLT +L P IL+S + R ++ + L++ +I AF + Sbjct: 54 NNYMAIDPLSAPLLVLTCWLLPLMILASQNHTRTEPISRQRTFICLLISLQAFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 114 TEILMFYVMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLALQNSMG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + S+I L S P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 SLSMIILNFNS--PLVLASWGDMMWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMIRMSAILDPLTKEAAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + G+ Sbjct: 291 SVSHMGLVAGGILIQTPWGLTGALILMIAHGLVSSALFCLANTSYERTHSRTMALARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + ++AN+ LP +GE ++I ++F S L G +++A Y+L+ Sbjct: 351 MLFPLTATWWFIASLANLALPPLPNLMGEVMIITTMFNWSPWTLALTGVGTLITAGYALY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G E ++ L RE ++ Sbjct: 411 MFLMTQRG-PMPEHIKGLPPYHTREHLLI 438 >gi|110433034|gb|ABG74247.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] gi|110433039|gb|ABG74251.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] gi|110433044|gb|ABG74255.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] gi|110433049|gb|ABG74259.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] gi|110433054|gb|ABG74263.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] Length = 459 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 132/399 (33%), Positives = 213/399 (53%), Gaps = 25/399 (6%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLALTMWLLPLTIMASQYHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QNHMGTLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L+ M+ + P S W MW+A +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 LFMMTYWSQELPNS---WSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R + L PL +++ A L L +I SL+ + QTD+K LIAYSS+ Sbjct: 233 AILLKLGGYGMMRITMILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YSL++ Sbjct: 352 LPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYML 411 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G S + RE + ++P+ +LT+ Sbjct: 412 VMTQRGKS-LYHMHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|213136259|gb|ACJ43800.1| NADH dehydrogenase subunit 4 [Paramesotriton laoensis] Length = 459 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 134/394 (34%), Positives = 216/394 (54%), Gaps = 19/394 (4%) Query: 50 FVWSVFDKGRSSFQMIEYYHWIDY------FCSYHLGVDGISILLVVLTTFLTPFCILSS 103 ++W+ F G S M+ W++ F S + VD S L+VLT +L P L+S Sbjct: 22 WLWTHFMVGSSIIAMMSLT-WLNLPFEFSNFTSVLMSVDPASSPLLVLTCWLLPLMTLAS 80 Query: 104 WKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS- 158 K ++ N R Y+ +L++ +I AF S ++++FYI FE +LIP VII WG Sbjct: 81 QKHLKINPPSRQRAYLAMLTLLQASLIVAFSSTELIMFYIAFETTLIPTLVIITRWGNQV 140 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIA 214 ER+ A F YT GS+ +L A++++ + S+ M P ++Q + +W+A Sbjct: 141 ERLNAGTYFLFYTLAGSLPLLVALLILQNSIGSLSLALFSTME--PMTLQNYASKILWLA 198 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK GGYG +R L P+ + Sbjct: 199 CLLAFMVKMPLYGAHLWLPKAHVEAPVAGSMILAAVLLKFGGYGILRITTILTPMTKELS 258 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQML 334 P + L+L ++ L+ M QTD+K LIAYSS++HMG V I GA+ M+ Sbjct: 259 YPFMV-LALWGVVMTGLICMRQTDLKSLIAYSSVSHMGLVIAAIMIQTPWSATGAIILMV 317 Query: 335 SHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIG 394 SHGL+SSALF + Y+R +R + G +P A ++ ++NM LP + G Sbjct: 318 SHGLISSALFCLANMNYERTSSRTMLLVRGAQTALPLMATWWLITNLSNMALPPSMNLWG 377 Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 E +++S+F S ++ G +++A Y+L+++ Sbjct: 378 ELTIMVSLFNWSPWTILITGAGTLITASYTLYMF 411 >gi|208433811|ref|YP_002265623.1| NADH dehydrogenase subunit 4 [Lactoria diaphana] gi|207367083|dbj|BAG72056.1| NADH dehydrogenase subunit 4 [Lactoria diaphana] Length = 460 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 134/383 (34%), Positives = 207/383 (54%), Gaps = 23/383 (6%) Query: 54 VFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----E 109 +FD G SS S ++ D +S L+VLT +L P IL+S Sbjct: 45 MFDAGWSSL-------------SLYMATDLLSTPLLVLTCWLLPLMILASQSHTATEPIN 91 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFF 168 R Y+ L+ +I AF + ++++FY+ FEA+LIP ++I WG +ER+ A F Sbjct: 92 RQRMYITILTSLQFFLIMAFSATEVIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFL 151 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPM 225 YT GS+ +L A++++ T S++ L + ++ + W W +F +K+P+ Sbjct: 152 FYTLAGSLPLLVALLLLQNSTGTLSLLTLQYSDPLQLHTYADKLW-WAGCMLAFLVKMPL 210 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R L+ L PL + P I F +L Sbjct: 211 YGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMLIILEPLTKELSYPFIIF-ALWG 269 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I + + QTD+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Sbjct: 270 VIMTGSICLRQTDLKSLIAYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFC 329 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R H+R + GL +P V ++AN+ LP +GE ++I S+F Sbjct: 330 LANTNYERTHSRTMLLARGLQMALPLMTAWWFVASLANLALPPLPNLMGELMIITSLFNW 389 Query: 406 SNTVAVLASFGVVLSALYSLWLY 428 S L G +++A YSL+++ Sbjct: 390 SWFTLALTGAGTLITAGYSLYMF 412 >gi|30466107|gb|AAP33639.1|AF224593_4 NADH dehydrogenase subunit 4 [Lepilemur edwardsi] Length = 458 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 129/396 (32%), Positives = 212/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++L +L P +++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILAMWLFPLTVMASQYHLAKEPWERKKHFLFTLISLQLFLILTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALSSI---QNYMGTLN 175 Query: 197 LYAMSKFPFS-IQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + I W MW+A +F IK+P++ FH WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWTQELINSWSSNLMWVACIMAFMIKMPLYGFHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITIILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + +GE + M+ F SN +L ++++A YSL++ Sbjct: 355 MSTWWLLASLTNLALPPSINLVGELFITMASFSWSNMTIILTGLNMLITATYSLYMLMMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G K RE + V+P+ +LT+ Sbjct: 415 QRG-KPPYHAHNFKPSLTRENTLMSMHVFPLLLLTL 449 >gi|10954249|gb|AAG25849.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] Length = 459 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 123/356 (34%), Positives = 200/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKEPWILKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYTQNYMGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNTLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP ++ IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSTNLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|280978275|ref|YP_003345212.1| NADH dehydrogenase subunit 4 [Cynoponticus ferox] gi|271280480|dbj|BAI53311.1| NADH dehydrogenase subunit 4 [Cynoponticus ferox] Length = 460 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 214/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VL+ +L P IL+S + R Y++ ++L+ ++ AF + Sbjct: 54 NLYLATDPLSTPLLVLSCWLLPLMILASQNHMSTEPITRQRSYIMLLIMLQILLTLAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 114 TEIIMFYIMFEATLIPTLIVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLSL--QND 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSMLIIQYTGPLTLTSWGDKIWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL Q P I L+L II ++ + QTD+K +IAYS Sbjct: 232 LAAVLLKLGGYGMMRIMVMLDPLTKQLSYPFII-LALWGIIMTGMICLRQTDLKSMIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MVLPLMTTWWFLSSLANLALPPLPNLMGELMIITSMFNWSYWSILLTGTGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + + L+ RE ++ Sbjct: 411 MFLMTQRGPTPAH-MMALEPSHTREHLLI 438 >gi|83779491|gb|ABC47554.1| NADH dehydrogenase subunit 4 [Vampyrodes caraccioli] Length = 459 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 199/363 (54%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + Y+ ++L+ +I F + ++++F Sbjct: 59 DSLSTPLIMLTLWLLPLMIIASQSHLANEHPTRKKSYITMLILLQIFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLLPTLIIITRWGNQAERLNAGLYFLFYTLMGSLPLLVALIY---------IQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L F + QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 LTGTLNFLLT-QYWTMPLPTSWSTTLMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITILLEPLTDSMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+M++F SN +L ++L+ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMAMFSWSNMSLILLGLNIILTALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|157011651|gb|ABV00999.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|157011656|gb|ABV01003.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|157011661|gb|ABV01007.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|157011666|gb|ABV01011.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|157011671|gb|ABV01015.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 209/381 (54%), Gaps = 9/381 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTTWLFPLTIMASQHHLTKESWERKKHFLSTLISLQLFLIMTFAATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 Y FE++LIP +II WG +ER+ A F YT GS+ +L A+ + T S+ Sbjct: 119 YTLFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALSHIQNSMGTLSLFM 178 Query: 197 L-YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + Y + + P S Y +W A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 MTYWLQELPNSWSNYLLWTACIMAFMVKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R ++ L PL +++ A + L +I SL+ + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMVRIIMILNPL-TKFMAYPFLMMCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I + GA M++HGL SS LF Y+R+H+R + GL +P + Sbjct: 298 IMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERIHSRTMLLARGLQALLPLMST 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP + IGE LV M+ F SNT +L ++++A YSL++ G Sbjct: 358 WWLLASLNNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLITATYSLYMLTTTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCMV 455 Q RE ++ Sbjct: 418 -KPSYHTQNFNPSLTRENTLM 437 >gi|213136357|gb|ACJ43891.1| NADH dehydrogenase subunit 4 [Mesotriton alpestris] Length = 458 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 219/391 (56%), Gaps = 13/391 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S + VD IS L+VLT +L P L+S ++ N R Y+ +L+ +I AF Sbjct: 51 FVSMYSLVDPISSPLLVLTCWLLPLMALASQNHLKNNPPSKQRTYLFMLTLLQISLIIAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 111 SAAELILFYIAFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLMGSLPLLVALLTLQSS 170 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + S+I + M P +Q + +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 LGSLSLILMGMME--PMIMQDYTSKILWLACILAFMVKMPLYGAHLWLPKAHVEAPVAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L PL + P + L+L ++ SL+ M QTD+K LIA Sbjct: 229 MILATVLLKLGGYGIIRVSMLLTPLTQEMAYPFVV-LALWGVVMTSLICMRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V I + GA+ M+SHGL+SSALF Y+R H+R + G Sbjct: 288 YSSVSHMGLVIASIMIQTPLSLTGAIILMISHGLISSALFCLANFNYERTHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++ +++NM +P + GE +++S+F S ++ G +++A Y+ Sbjct: 348 VQAVLPLMSAWWLITSLSNMAIPPSMNLFGELTIMLSLFNWSPWTILITGAGTLITASYT 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+++ G + ++ + RE ++ Sbjct: 408 LYMFLTAQRGPTP-NHLRPMNPSYTREHLLM 437 >gi|295293558|gb|ADF88100.1| NADH dehydrogenase subunit 4 [Pan troglodytes schweinfurthii] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 135/395 (34%), Positives = 218/395 (55%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + +I+ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTLGSLNIL- 177 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L PL P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPLTKHMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 356 AFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + +K RE +++ PI +L++ Sbjct: 416 WG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|295293404|gb|ADF87957.1| NADH dehydrogenase subunit 4 [Pan troglodytes troglodytes] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 135/395 (34%), Positives = 218/395 (55%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + +I+ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTLGSLNIL- 177 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L PL P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPLTKHMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 356 AFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + +K RE +++ PI +L++ Sbjct: 416 WG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|262399589|gb|ACY65553.1| NADH dehydrogenase subunit 4 [Pan troglodytes schweinfurthii] gi|262399659|gb|ACY65618.1| NADH dehydrogenase subunit 4 [Pan troglodytes schweinfurthii] gi|295293418|gb|ADF87970.1| NADH dehydrogenase subunit 4 [Pan troglodytes schweinfurthii] gi|295293502|gb|ADF88048.1| NADH dehydrogenase subunit 4 [Pan troglodytes schweinfurthii] gi|295293656|gb|ADF88191.1| NADH dehydrogenase subunit 4 [Pan troglodytes schweinfurthii] gi|295293698|gb|ADF88230.1| NADH dehydrogenase subunit 4 [Pan troglodytes schweinfurthii] gi|295293712|gb|ADF88243.1| NADH dehydrogenase subunit 4 [Pan troglodytes schweinfurthii] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 135/395 (34%), Positives = 218/395 (55%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + +I+ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTLGSLNIL- 177 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L PL P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPLTKHMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 356 AFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + +K RE +++ PI +L++ Sbjct: 416 WG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|209447652|gb|ACI47120.1| NADH dehydrogenase subunit 4 [Lemur catta] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 203/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S LVVLT +L P I++S +++ ++ I+ L+ L+ +I F + +++LF Sbjct: 59 DSLSSPLVVLTMWLLPLMIMASQHHLKKEPWTLKKLYISMLIFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHI---QNYLGSLN 175 Query: 197 LYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + MS F W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 MLTMSFCFQELSNSWSSNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQTILPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSLYMLTTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|221143396|ref|YP_002519403.1| NADH dehydrogenase subunit 4 [Nelusetta ayraudi] gi|219806749|dbj|BAH10404.1| NADH dehydrogenase subunit 4 [Nelusetta ayraudi] Length = 460 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 131/359 (36%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S + EN + I L L+ +I AF + + Sbjct: 56 YLATDALSTPLLVLSCWLLPLMILASQNHMALEPENRQRLYICLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 VMMFYVMFEATLIPTLILITRWGNQTERLRAGVYFLFYTLAGSLPLLVALSLLYVSTGTL 175 Query: 193 SIIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S ++W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILQYSEPLQLSGLADEFW-WLGCMLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLTMLDPLTKEMSYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R HTR + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHTRTMVLARGLQTVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+ S L G +++A YSL+++ Sbjct: 354 PLMATWWFISSLANLALPPLPNLMGELMIITSLLNWSWWTIALTGAGTLITAGYSLYMF 412 >gi|110432725|gb|ABG74000.1| NADH dehydrogenase subunit 4 [Lepilemur aeeclis] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 129/396 (32%), Positives = 212/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++L +L P +++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILAMWLFPLTVMASQYHLAKEPWERKKHFLFTLISLQLFLILTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALSSI---QNYMGTLN 175 Query: 197 LYAMSKFPFS-IQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + I W MW+A +F IK+P++ FH WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWTQELINSWSSNLMWVACIMAFMIKMPLYGFHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITIILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + +GE + M+ F SN +L ++++A YSL++ Sbjct: 355 MSTWWLLASLTNLALPPSINLVGELFITMASFSWSNMTIILTGLNMLITATYSLYMLMMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G K RE + V+P+ +LT+ Sbjct: 415 QRG-KPPYHAHNFKPSLTRENTLMSMHVFPLLLLTL 449 >gi|161333801|ref|YP_001568980.1| NADH dehydrogenase subunit 4 [Salmo trutta trutta] gi|160949172|emb|CAP40328.1| NADH dehydrogenase subunit 4 [Salmo trutta trutta] Length = 460 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 133/360 (36%), Positives = 203/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPLNRQRTYISLLVSLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDSGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMFTLQYTQ--PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 293 GHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P V ++AN+ LP +GE ++I S+F S+ +L G +++A YSL+L+ Sbjct: 353 LPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSHWTLLLTGLGTLITASYSLYLF 412 >gi|16357061|ref|NP_443576.1|ND4_15834 NADH dehydrogenase subunit 4 [Rondeletia loricata] gi|16267129|dbj|BAB70270.1| NADH dehydrogenase subunit 4 [Rondeletia loricata] Length = 460 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHMAPEPHNRQRVYISLLTSLQVFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 LIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQGDAGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYTKPLQLLSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLEPLTKELCYPFIIF-ALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMILARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTAWWFTASLANLALPPLPNLMGELMIITSLFNWSWWSLLLTGAGTLITAGYSLYMF 412 >gi|46361968|gb|AAS89467.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589416|gb|AAT36109.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589439|gb|AAT36113.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589457|gb|AAT36117.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589488|gb|AAT36121.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589520|gb|AAT36125.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589545|gb|AAT36129.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589574|gb|AAT36133.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589596|gb|AAT36137.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589622|gb|AAT36141.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 211/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P +++S K E + ++ + L+ +++ F + ++++F Sbjct: 59 DPLSSPLLALTMWLLPLTVVASQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP VII WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVAL---SYIQSSMGTLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ +++N+ LP + IGE LV M+ F SNT +L ++++A YSL++ Sbjct: 355 MSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLVTATYSLYMLTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S +Q RE ++ Sbjct: 415 QRGKSPYH-MQNFSPSLTRENTLM 437 >gi|108793458|ref|YP_636928.1| NADH dehydrogenase subunit 4 [Diretmoides veriginae] gi|25005813|dbj|BAC23446.1| NADH dehydrogenase subunit 4 [Diretmoides veriginae] Length = 460 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 200/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+ LT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLTLTCWLLPLMILASQNHMALEPVSRQRTYITLLTSLQLFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLMALLLLQNEAGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L + +S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMITLQYTKPLQLLTYSDKIW-WAGCLLAFLVKMPLYGMHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R + L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMTMLEPLTKEMSYPFII-LALWGIIMTGSICLRQTDLKALIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMVAHGLASSALFCLANTNYERTHSRTMILARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I ++F S L G +++A YSL+++ Sbjct: 354 PLMTSWWFIASLANLALPPLPNLMGELMIITALFNWSWWTLALTGAGTLITASYSLYMF 412 >gi|219560211|gb|ACL27336.1| NADH dehydrogenase subunit 4 [Globicephala melas] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 206/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ + L+ ++I F + ++++F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLITLQILLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YITFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALMYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGTNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|30142170|gb|AAP13857.1| NADH dehydrogenase subunit 4 [Etheostoma barbouri] Length = 461 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 200/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQSHTTSEPLARQRMYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLIIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSSGTL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L F F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITLQFSDPFQLTSFADKLW-WAGCLMAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL P I F +L ++ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIVVLLEPLTKDLSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVIGGILVQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQVLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S L G++++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELMIVTSLFNWSWWTLTLTGAGMLITASYSLYMF 412 >gi|327492579|ref|YP_004347479.1| NADH dehydrogenase subunit 4 [Arothron meleagris] gi|327493027|ref|YP_004347975.1| NADH dehydrogenase subunit 4 [Arothron manilensis] gi|327392514|dbj|BAK09947.1| NADH dehydrogenase subunit 4 [Arothron manilensis] gi|327392542|dbj|BAK09973.1| NADH dehydrogenase subunit 4 [Arothron meleagris] Length = 460 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 133/365 (36%), Positives = 204/365 (55%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F S +L D +S L+VL+ +L P IL+S N + I+ L L+ +I AF Sbjct: 52 FLSPYLATDPLSTPLLVLSCWLLPLMILASQNHTAHEPINRQRMYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP V+I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 AATEMIMFYVMFEATLIPTLVLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 S+ L + P ++ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NSNGSLSLLTLLHTTPPQLSTYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRILVTLEPLTKELSYPFII-LALWGVIMTGSICMRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + ++AN+ LP +GE ++I S+F S L G +++A Y Sbjct: 348 GLQMALPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIALTGLGTLITAGY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|114223861|gb|ABI54741.1| NADH dehydrogenase subunit 4 [Indri indri] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 202/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + R+ Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQYHLMKEPSLRKKFYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ M + +S ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYM---QNSSGSLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L M+ + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 LLTMNFWLKELPNSWSNNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTVLDP-TTKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSLYM 410 >gi|25057568|ref|NP_739759.1| NADH dehydrogenase subunit 4 [Chaunax tosaensis] gi|25005673|dbj|BAC23329.1| NADH dehydrogenase subunit 4 [Chaunax tosaensis] Length = 460 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 129/358 (36%), Positives = 204/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S ++ R Y++ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHMRPEPAGRQRTYIMLLTSLQIFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQNNTGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L ++ F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLALQYSAPIALTTFASKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMLVILNPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVVGGILIQTPWGFTGALTLMIAHGLTSSALFCLANTNYERTHSRTMILARGLQILLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE +++ S+F S L G +++A YSL+++ Sbjct: 355 LMATWWFIASLANLALPPLPNLMGELMILTSLFNWSYWTIALTGGGTLITAGYSLYMF 412 >gi|327492527|ref|YP_004347427.1| NADH dehydrogenase subunit 4 [Torquigener hypselogeneion] gi|327392486|dbj|BAK09921.1| NADH dehydrogenase subunit 4 [Torquigener hypselogeneion] Length = 460 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 130/387 (33%), Positives = 210/387 (54%), Gaps = 11/387 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPISRQRMYITLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L +++ + + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLVLPHLAQLELTTYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ + PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILITMDPLTKELSYPFII-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMVLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMGAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRER 452 +++ G + + L+ RE Sbjct: 410 YMFLMTQRGPTP-NHLLALEPSHTREH 435 >gi|16357188|ref|NP_443277.1| NADH dehydrogenase subunit 4 [Myctophum affine] gi|16266888|dbj|BAB70075.1| NADH dehydrogenase subunit 4 [Myctophum affine] Length = 460 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 130/358 (36%), Positives = 203/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VL+ +L P IL+S + R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLSCWLLPLMILASQNHMSHEPMNRQRTYITLLTSLQFFLILAFGATEV 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ E T S Sbjct: 117 FMFYIMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNETGTLS 176 Query: 194 IIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L + +S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQYGAPLLLTTWSNKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R +L L PL+ + P I L+L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMLLLDPLSKELAYPFIA-LALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + G+ +P Sbjct: 295 MGLVAGGILIQTPWGFTGALVLMIAHGLASSALFCLANTTYERTHSRTMILARGMQTILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A V ++AN+ LP +GE ++I S+FQ +L G +++A YSL+++ Sbjct: 355 LMATWWFVSSLANLALPPLPNLMGELMIITSLFQLIALNLILTGAGTLITAGYSLYMF 412 >gi|156072998|gb|ABU45825.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWTLKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNSILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|226355371|ref|YP_002785111.1| NADH dehydrogenase (quinone) subunit M [Deinococcus deserti VCD115] gi|226317361|gb|ACO45357.1| putative NADH dehydrogenase (quinone), subunit M (NADH-quinone oxidoreductase, subunit M) [Deinococcus deserti VCD115] Length = 474 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 131/420 (31%), Positives = 237/420 (56%), Gaps = 9/420 (2%) Query: 70 WIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA 128 WID +Y + +DG+S+ L ++T F++ L + + I N + L +E+ ++G Sbjct: 55 WIDALGVTYSVQLDGVSLALALVTAFMSFIACLYTARRI-PNPGTMLALILGMETGLLGI 113 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW- 187 F + D++LFY+FFE +LIP +++ ++G R+ A KF YT FGS+ ML + + + + Sbjct: 114 FAARDLILFYVFFEDALIPALLMLAIYGKDRRMKALVKFAAYTLFGSLLMLVSFIGIKYL 173 Query: 188 -EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ DL A + ++Q W++I F + A+K+P++P H WLP+ H Q +G Sbjct: 174 GGSPTFALADLRA-NPVQGAMQTWLYIGFLLAMAVKLPLWPLHAWLPDFHEQNHESGIPD 232 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 + G + K+GGYG +F + LFP AS P++ L+ +YA+ ++ QTD K+L+AY+ Sbjct: 233 VMGTLYKVGGYGIFQFGITLFPDASLELRPILMGLAAFTALYAAWIAFHQTDWKRLLAYA 292 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 ++HMG+V +G+FS ++ V GAM+ + L + ALF VG++ +R+ + D GG++ Sbjct: 293 GLSHMGFVALGVFSLNETAVIGAMYLLAFQNLYTGALFLSVGMLQERIGSLDT-RVGGVM 351 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 + M A++ +PG +GFIGEF +++ +Q S + +A + +A Y+L Sbjct: 352 TQAGALGGLTMALWFASIAVPGMAGFIGEFSILLGAYQISPWLTFIAGITTIAAAAYALT 411 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV-YPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 ++ + V ++ DL E ++ P+AV +FFGIY P + + +++ Sbjct: 412 AFQTTFWQARPLGGV-RVADLQHVEWLVLGLPLAV-AIFFGIYSAPALNLMQPAVKAVLS 469 >gi|5835774|ref|NP_008584.1|ND4_15061 NADH dehydrogenase subunit 4 [Orycteropus afer] gi|4691363|emb|CAB41630.1| NADH dehydrogenase subunit 4 [Orycteropus afer] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 122/356 (34%), Positives = 200/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ ++L+ +I F + +++LF Sbjct: 59 DALSTPLLILTCWLLPLMLMASQHHLHPESLQRKKSYITMLILLQLFLIMTFAAAELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ W + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALM---WIQNSLGTLN 175 Query: 197 LYAMSKFPFSIQY-W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 M + + + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 FLIMQLWAQPLPHLWSSNFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ + P + LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRISILLDPVTNHMAYPFLM-LSLWGMVMTSSMLLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIIATLIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERIHSRTMILARGLQVLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 + ++ ++ N+ LP T IGE V+ S F SN +L ++++ALYSL++ Sbjct: 355 MSAWWLLASLTNLALPPTINLIGELFVVTSSFYWSNLTMILMGLNILITALYSLYM 410 >gi|30466117|gb|AAP33647.1|AF224595_4 NADH dehydrogenase subunit 4 [Lepilemur edwardsi] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 199/372 (53%), Gaps = 28/372 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTMWLLPLTIMASQYHLTKEPSQRKKHFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVAL----------SSIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMVTYWSQEMPNSWSNSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVALLIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNVTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVS 436 L++ G S Sbjct: 408 LYMLTMTQRGKS 419 >gi|5835675|ref|NP_008493.1|ND4_15043 NADH dehydrogenase subunit 4 [Artibeus jamaicensis] gi|4164483|gb|AAD05446.1| NADH dehydrogenase subunit 4 [Artibeus jamaicensis] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 125/360 (34%), Positives = 194/360 (53%), Gaps = 31/360 (8%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+LIP VII WG +ER+ A F Y Sbjct: 93 KSYITMLILLQIFLIMTFTATELIMFYILFEATLIPTLVIITRWGNQAERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW------------MWIAFFCS 218 T GS+ +L A+ + I +L F IQYW +W+A + Sbjct: 153 TLVGSLPLLIAL---------THIQNLTGTLNF-LLIQYWTTLLPTSWNTTLLWLACMMA 202 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + + A Sbjct: 203 FMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITVLLDPL-TDFMAYPF 261 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL +I S + + QTD+K LIAYSS++HM V I GA M++HGL Sbjct: 262 MMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFMGATALMIAHGL 321 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 SS LF Y+R+H+R + GL +P A ++ ++ N+ LP T IGE + Sbjct: 322 TSSMLFCLANSNYERVHSRTMILARGLQMLLPLMAAWWLLASLTNLALPPTINLIGELFI 381 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS---LRERCMV 455 +MS+F SN L ++L+ALYSL++ + + + Q + ++S RE ++ Sbjct: 382 VMSMFSWSNLSITLLGLNIILTALYSLYM----LIMTQRGKHTQHINNISPSYTRENTLM 437 >gi|317134315|ref|YP_004123144.1| NADH dehydrogenase subunit 4 [Cottus hangiongensis] gi|166066463|gb|ABY80728.1| NADH dehydrogenase subunit 4 [Cottus hangiongensis] Length = 460 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 201/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NFYMATDALSTPLLVLTCWLLPLMILASQNHTASEPLNRQRAYLTLLTSLQVFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L S + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLPYSDPLQLSSYAHKLW-WTGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMVVMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFSGALVLMIAHGLXSSALFCLANTSYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 VLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIILTGGGTLITASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|238866900|ref|YP_002929370.1| NADH dehydrogenase subunit 4 [Eulemur fulvus fulvus] gi|238866928|ref|YP_002929408.1| NADH dehydrogenase subunit 4 [Eulemur fulvus mayottensis] gi|10954114|gb|AAG25741.1| NADH dehydrogenase subunit 4 [Eulemur fulvus fulvus] gi|10954119|gb|AAG25745.1| NADH dehydrogenase subunit 4 [Eulemur fulvus fulvus] gi|10954124|gb|AAG25749.1| NADH dehydrogenase subunit 4 [Eulemur fulvus fulvus] gi|10954144|gb|AAG25765.1| NADH dehydrogenase subunit 4 [Eulemur fulvus fulvus] gi|10954149|gb|AAG25769.1| NADH dehydrogenase subunit 4 [Eulemur fulvus mayottensis] gi|10954154|gb|AAG25773.1| NADH dehydrogenase subunit 4 [Eulemur fulvus mayottensis] gi|10954259|gb|AAG25857.1| NADH dehydrogenase subunit 4 [Eulemur fulvus fulvus] gi|156072973|gb|ABU45805.1| NADH dehydrogenase subunit 4 [Eulemur fulvus fulvus] gi|156072978|gb|ABU45809.1| NADH dehydrogenase subunit 4 [Eulemur fulvus fulvus] gi|238809281|dbj|BAH69113.1| NADH dehydrogenase subunit 4 [Eulemur fulvus fulvus] gi|238809295|dbj|BAH69126.1| NADH dehydrogenase subunit 4 [Eulemur fulvus mayottensis] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYMGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNSILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|25057152|ref|NP_739733.1| NADH dehydrogenase subunit 4 [Lophius americanus] gi|25005645|dbj|BAC23303.1| NADH dehydrogenase subunit 4 [Lophius americanus] Length = 460 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 130/360 (36%), Positives = 200/360 (55%), Gaps = 14/360 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+I L++ +I AF + +M Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQAHTASEPVGRQRLYIILLTSLQAFLIMAFSATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + + Sbjct: 117 ILFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLWL--QNNAGT 174 Query: 194 IIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + L + P + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSLLTLLYSDPLQLGVYAHKLW-WAGCVLAFLVKMPLYGMHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMLMMLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMA 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + ++AN+ LP +GE ++I S+F S VL G +++A YSL+++ Sbjct: 353 LPLMTAWWFIASLANLALPPLPNLMGELMIITSLFSWSWWTLVLTGAGTLITAGYSLYMF 412 >gi|294774357|dbj|BAJ05640.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|294774371|dbj|BAJ05653.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|294774455|dbj|BAJ05731.1| NADH dehydrogenase subunit 4 [Canis lupus] gi|294774469|dbj|BAJ05744.1| NADH dehydrogenase subunit 4 [Canis lupus] gi|294774483|dbj|BAJ05757.1| NADH dehydrogenase subunit 4 [Canis lupus] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSYHIKNIKPSFTRENA 435 >gi|192293690|ref|YP_001994375.1| NADH dehydrogenase subunit 4 [Alepocephalus bicolor] gi|190715096|dbj|BAG49341.1| NADH dehydrogenase subunit 4 [Alepocephalus bicolor] Length = 460 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISPEPISRQRTYISLLTSLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGTL 175 Query: 193 SIIDL-YAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L Y+ F S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQYSQPLFLLSWGDKIW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV ++AN+ LP +GE ++I ++F S V G +++A YSL+L+ Sbjct: 354 PLTAVWWFTASLANLALPPLPNLMGEIMIITTMFNWSPWTLVFTGLGTLITAGYSLYLF 412 >gi|88061953|gb|ABD38956.1| NADH dehydrogenase subunit 4 [Stellifer lanceolatus] Length = 460 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 137/400 (34%), Positives = 213/400 (53%), Gaps = 15/400 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + +L D +S L++LT +L P IL+S + R YM L+ +I AF Sbjct: 52 FLNSYLATDSLSTPLLILTCWLLPLMILASQNHMAIEPINRQRVYMTLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++V+ Sbjct: 112 SATEMIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLVLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQFSNPAHLTTYADKLW-WTACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R + L PL + P I L+L ++ + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRIMPMLAPLTKELSYPFII-LALWGVLMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++AN+ LP +GE ++I ++F S L G +++A YSL Sbjct: 350 QVALPLMATWWFFASLANLALPPLPNLMGELMIITALFNWSWWTLALTGTGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVL 461 +++ G + L+ RE ++ P+A+L Sbjct: 410 YMFLMTQRGPLPAH-ITALEPSHSREHLLITLHLAPLALL 448 >gi|62161175|ref|YP_214857.1| NADH dehydrogenase subunit 4 [Crocidura russula] gi|54397763|gb|AAV33751.1| NADH dehydrogenase subunit 4 [Crocidura russula] gi|54397777|gb|AAV33764.1| NADH dehydrogenase subunit 4 [Crocidura russula] Length = 459 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 207/389 (53%), Gaps = 13/389 (3%) Query: 76 SYHLGV----DGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIG 127 +YH D +S L+ LTT+L P I++S + + + Y+ ++L+ +I Sbjct: 49 AYHFSTTFYSDSLSAPLLALTTWLLPLMIMASQNHLMNETETRKKTYITMLILLQIFLIM 108 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 F + +++LFYI FEA+L+P ++I WG +ER+ A F YT GS+ +L A+V + Sbjct: 109 TFSATELILFYILFEATLVPTLILITRWGNQTERLNAGLYFLFYTLIGSLPLLVALVYIQ 168 Query: 187 WEKKTSS--IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T + I ++ + ++W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 169 NFLGTLNMPITHIWTQNIMNSWSNDFLWLACMMAFLVKMPLYGLHLWLPKAHVEAPVAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+G YG +R L PL P + LSL ++ S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGSYGMMRITTLLDPLTESMLFPFLT-LSLWGMVMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE VI+S F S +L VV++ALYS Sbjct: 348 LQTLLPIMAAWWLLGSLANLALPPTINLIGELFVIISSFSWSYITMLLTGLNVVITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 L++ G + +Q + RE Sbjct: 408 LYMLIMTQRG-KYTQHIQMINPSFTRENA 435 >gi|16357465|gb|AAD05150.2| NADH dehydrogenase subunit 4 [Lemur catta] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 201/362 (55%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S LVVLT +L P I++S +++ ++ I+ L+ L+ +I F + +++LF Sbjct: 59 DSLSSPLVVLTMWLLPLMIMASQHHLKKEPWTLKKLYISMLIFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHI--QNYLGSLNM 176 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L F W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LTMNFCFQELSNSWSSNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 296 LVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQTILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSLYMLTTTQ 415 Query: 433 FG 434 G Sbjct: 416 RG 417 >gi|325511692|gb|ADZ23022.1| NADH dehydrogenase subunit 4 [Peponocephala electra] gi|325511706|gb|ADZ23035.1| NADH dehydrogenase subunit 4 [Peponocephala electra] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 207/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L+ ++I F + ++++F Sbjct: 59 DPLSTPLLMLTMWLLPLMLMASQSHLLKEPLARKKLYITMLIMLQILLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YITFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALMYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPL-TEHMAYPFLALSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGTNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|182412298|ref|YP_001817364.1| proton-translocating NADH-quinone oxidoreductase, chain M [Opitutus terrae PB90-1] gi|177839512|gb|ACB73764.1| proton-translocating NADH-quinone oxidoreductase, chain M [Opitutus terrae PB90-1] Length = 509 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/421 (30%), Positives = 224/421 (53%), Gaps = 17/421 (4%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSL 132 Y LG++GIS+ L VL + L + +S E + Y++ L+++ ++G F S+ Sbjct: 76 YGIGLKLGLNGISLPLFVLAALVGLAAGLYAIQSQAERLKIYLMLLLIMQGGLLGVFASV 135 Query: 133 DMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 D+ FY F E +LIP F+++GVWGG +R YAA K +Y G++ L ++ + + K + Sbjct: 136 DVFFFYFFHELALIPTFIMVGVWGGRDRSYAAMKLTIYLTVGAMLSLLGLIAL-YVKSGA 194 Query: 193 SIIDLYAMSKF----PF--SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + DL + ++ P ++Q ++ F I + ++PFHTW P + AP++ ++ Sbjct: 195 NSFDLITLRQYVAGQPLGETLQQNIFAVLMFGFGILVSLWPFHTWAPLGYGAAPSSAAML 254 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA-IIYASLVSMVQTDIKKLIAY 305 AG++ K G YG I+ LPL P +++ + +L++I ++ L++M Q D+K++I Y Sbjct: 255 HAGVLKKFGLYGLIQVALPLLPAGLAHWSHPLAWLAVIGNVLVVGLITMAQRDLKQMIGY 314 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMGY +GI +G GV G + M++HGL + LF I+ R HT + GGL Sbjct: 315 SSVMHMGYAFLGIAAGSTLGVGGVVMIMVAHGLSVALLFLLATSIHHRTHTFAMDEMGGL 374 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P A T A++GLPG + F GEF + +++++ S + LA G+++SA+Y L Sbjct: 375 AQKTPVLAAFFTAATFASIGLPGFANFWGEFTIFIALWRFSPLITALAVSGIIISAIYGL 434 Query: 426 WLYRKVVFG-----VSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480 V FG ++ DL E+ + +F G +P + S P+ Sbjct: 435 RSVANVFFGAPTAALATVTAQHPPADLRWSEKVPALILLAALLFVGFWP----KSISTPI 490 Query: 481 S 481 + Sbjct: 491 N 491 >gi|208433825|ref|YP_002265584.1| NADH dehydrogenase subunit 4 [Thamnaconus modestus] gi|207367055|dbj|BAG72030.1| NADH dehydrogenase subunit 4 [Thamnaconus modestus] Length = 460 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/359 (36%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S + EN + I+ L L+ +I AF + + Sbjct: 56 YLATDALSTPLLVLSCWLLPLMILASQNHMAPEPENRQRLYISLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 VMMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALSLLYVSTGTL 175 Query: 193 SIIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILQYSEPLHLSGLADKFW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLIVLDPLTKELSYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQTIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+ S L G +++A YSL+++ Sbjct: 354 PLMATWWFISSLANLALPPLPNLMGELMIITSLLNWSWWTIALTGLGTLITAGYSLYMF 412 >gi|38639797|ref|NP_943659.1| NADH dehydrogenase subunit 4 [Etheostoma radiosum] gi|32895007|gb|AAP91541.1| NADH dehydrogenase subunit 4 [Etheostoma radiosum] Length = 460 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L++LT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLILTCWLLPLMILASQSHTTSEPLNRQRMYITLLTSLQFFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 VIMFYVMFEATLIPTLIIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSSGTL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L F F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITLQFTDPFQLTSFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL P I F +L ++ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIVVVLEPLTKDLAYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE +++ S+F S L G++++A YSL+++ Sbjct: 354 PLMAAWWFIASLANLALPPLPNLMGELMIVTSLFNWSWWTLALTGAGMLITASYSLYMF 412 >gi|30466122|gb|AAP33651.1|AF224596_4 NADH dehydrogenase subunit 4 [Lepilemur ruficaudatus] gi|47589176|gb|AAT36065.1| NADH dehydrogenase subunit 4 [Lepilemur ruficaudatus] gi|47589203|gb|AAT36069.1| NADH dehydrogenase subunit 4 [Lepilemur ruficaudatus] gi|47589220|gb|AAT36073.1| NADH dehydrogenase subunit 4 [Lepilemur ruficaudatus] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/402 (32%), Positives = 207/402 (51%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ L +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLAMWLFPLTIMASQYHLAKESLERKKHFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SSIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWTQELADSWSNDLMWVACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMMRITIILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H R +F G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMFLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + +GE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLVGELFITMATFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G L+ M V+P+ +LT+ Sbjct: 408 LYMLTMTQRGEPPYHAHNFNPSLTRENTLMSMHVFPLLLLTL 449 >gi|30142190|gb|AAP13867.1| NADH dehydrogenase subunit 4 [Etheostoma basilare] Length = 461 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 200/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQSHTASXPLNRQRVYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLIIITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLLLKNSSGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L + F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITLQFSDPLQLTSFADKLW-WAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRVVIVLEPLTKDLSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S L G++++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELMIVTSLFNWSWWTLALTGAGMLITASYSLYMF 412 >gi|30142184|gb|AAP13864.1| NADH dehydrogenase subunit 4 [Etheostoma basilare] Length = 461 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 200/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQSHTASXPLNRQRVYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLIIITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLLLQNSSGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L + F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITLQFSDPLQLTSFADKLW-WAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRVVIVLEPLTKDLSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S L G++++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELMIVTSLFNWSWWTLALTGAGMLITASYSLYMF 412 >gi|10954129|gb|AAG25753.1| NADH dehydrogenase subunit 4 [Eulemur fulvus fulvus] gi|10954134|gb|AAG25757.1| NADH dehydrogenase subunit 4 [Eulemur fulvus fulvus] gi|10954139|gb|AAG25761.1| NADH dehydrogenase subunit 4 [Eulemur fulvus fulvus] gi|10954254|gb|AAG25853.1| NADH dehydrogenase subunit 4 [Eulemur fulvus sanfordi] gi|10954269|gb|AAG25865.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albifrons] gi|10954279|gb|AAG25873.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albifrons] gi|156072983|gb|ABU45813.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albifrons] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYMGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNSILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|16357412|ref|NP_443459.1|ND4_15825 NADH dehydrogenase subunit 4 [Stephanolepis cirrhifer] gi|16267352|dbj|BAB70465.1| NADH dehydrogenase subunit 4 [Stephanolepis cirrhifer] Length = 460 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 134/377 (35%), Positives = 204/377 (54%), Gaps = 12/377 (3%) Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYM 115 S F+ I W + +L D +S L+VL+ +L P IL+S + R Y+ Sbjct: 40 SWFKYITETGWTT--TNNYLATDTLSTPLLVLSCWLLPLMILASQNHVSHEPLARQRLYI 97 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFG 174 L+ +I AF + + ++FY+ FEA+LIP ++I WG +ER+ A F YT G Sbjct: 98 SVLTSLQIFLILAFGATEAMMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAG 157 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTW 231 S+ +L A+ ++ + S + + S + W W +F +K+P++ H W Sbjct: 158 SLPLLVALSLLYSSTGSLSFFIIQYLGPLQLSTLLDKLW-WAGCMLAFLVKMPLYGMHLW 216 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP AHV+AP AGS+ LA ++LK+GGYG IR L+ L PL + P I L+L II Sbjct: 217 LPKAHVEAPVAGSMILAAVLLKLGGYGMIRMLVILDPLTKELSYPFII-LALWGIIMTGS 275 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 + + QTD+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Y Sbjct: 276 ICLRQTDLKSLIAYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNY 335 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R H+R + GL +P A + +AN+ LP +GE ++I S+F S + V Sbjct: 336 ERTHSRTMILARGLQTILPLMATWWFIMALANLALPPLPNLMGELMIISSLFNWSWSTIV 395 Query: 412 LASFGVVLSALYSLWLY 428 L G +++A YSL+++ Sbjct: 396 LTGLGTLITAGYSLYMF 412 >gi|207269742|ref|YP_002261374.1| NADH dehydrogenase subunit 4 [Rhinolophus formosae] gi|158142296|gb|ABW20501.1| NADH dehydrogenase subunit 4 [Rhinolophus formosae] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/395 (33%), Positives = 216/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENFRE---YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S + E + +M ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLMLTTWLLPLMLIASHYHLAHEPLNQKKLFMTMLILLQVFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLLPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALIYI--QNITGTLNF 176 Query: 195 -IDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + Y + P ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LLSTYWLQPLSPSWSNAFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P+ + + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITMFLNPV-TDFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP T IGE V+MS F S+ +L +V++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMSTFSWSSMSIILMGTNIVITALYSLYMLIMTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L RE + + P+ +L++ Sbjct: 416 RG-KHTYHINNLTPTFTRENTLMTMHIMPLLLLSI 449 >gi|28894804|ref|NP_795855.1| NADH dehydrogenase subunit 4 [Opisthoproctus soleatus] gi|28804978|dbj|BAC58260.1| NADH dehydrogenase subunit 4 [Opisthoproctus soleatus] Length = 460 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 SY+L D +S L+VL+ +L P I++S + + R Y+ L+ +I AF + Sbjct: 54 SYYLATDPLSTPLLVLSCWLLPLMIIASQSHMTPEPKSRQRTYISLLTSLQMFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLLQTHTG 173 Query: 191 TSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S+ L YA + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLFTLPYAQPLCLSSYADKMW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLDPLTKELAYPFII-LALWGVVMTGSICLRQTDLKALIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVASGILIQTPWGFTGAIILMIAHGLASSALFCLANTTYERTHSRTMLLTRGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P ++AN+ LP +GE ++I S+F S L G +++A YSL+L Sbjct: 352 IFPLMTTWWFAASLANLALPPLPNLMGELMIITSLFNWSLWTLALTGTGTLITASYSLYL 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|156766017|ref|YP_001434573.1| NADH dehydrogenase subunit 4 [Asymmetron inferum] gi|156713104|dbj|BAF76604.1| NADH dehydrogenase subunit 4 [Asymmetron inferum] Length = 452 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/406 (32%), Positives = 222/406 (54%), Gaps = 21/406 (5%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL----VLESMVIGAFLSLDM 134 L D +++ L L+ +L P +++S + + Y F+ VL +I AFLS D+ Sbjct: 55 LSADFMAVGLASLSAWLLPLMLMASQQHVNAEPMIYQRVFIFSQAVLTGALILAFLSSDL 114 Query: 135 LLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSS 193 LLFYI FE +L+P ++I WG + Y A +F+ YT GS+ +L ++ ++ + Sbjct: 115 LLFYIAFEITLLPTLMLITRWGAQKERYQAGTYFMFYTLVGSLPLLICLIGQ-YQHSGTL 173 Query: 194 IIDLYAMS--KFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 +D++ ++ +F ++I +W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++ Sbjct: 174 CLDIFYLNPPEFNYTINFW-WLGCIIAFLVKLPLYGSHLWLPKAHVEAPIAGSMVLAGVL 232 Query: 252 LKMGGYGCIR---FLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 LK+GGYG +R P+ L+S++ I L +I ++ + QTD+K LIAYSS+ Sbjct: 233 LKLGGYGMMRVSHLWGPMNTLSSEF----ILGFGLWGMISVGIICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V GI SG G GA+ M++HG+VSS LF Y+R HTR++ G + Sbjct: 289 GHMALVAAGILSGSTWGYMGALILMIAHGIVSSCLFCLANCWYERGHTRNLIGSRGALMM 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++ N+ LP + GE + +++ + S L VL+A YSL+L+ Sbjct: 349 FPLLTTAWLTSSLMNLALPPSINLFGELMAMVATYTWSTFSLSLMVISTVLAAGYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 +G + + + L+ L+ RE Y + +L + IY +P+ Sbjct: 409 GATQWGYT-VKTLHNLQLLTSRE----YLLMILHLTPAIYLIPMAQ 449 >gi|190349534|ref|YP_001974769.1| NADH dehydrogenase subunit 4 [Canthigaster rivulata] gi|89885700|dbj|BAE86978.1| NADH dehydrogenase subunit 4 [Canthigaster rivulata] Length = 460 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 133/365 (36%), Positives = 206/365 (56%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F + +L D +S L+VL+ +L P IL+S N + I+ L L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLVLSCWLLPLMILASQNHTAHEPINRQRMYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 GATEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 S+ L + P ++ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NSNGSLSLLTLLHSTPPHLSTYADKLW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L+ L PL + P I L+L II + M QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRILVTLEPLTKELSYPFII-LALWGIIMTGSICMRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A + ++AN+ LP +GE ++I S+F S +L G +++A Y Sbjct: 348 GLQMALPLMAAWWFLASLANLALPPLPNLMGELMIITSLFNWSWWTIILTGLGTLITAGY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|24817348|gb|AAN64708.1|AF224522_4 NADH dehydrogenase subunit 4 [Eulemur coronatus] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 201/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLVLTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 Y + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKYYLQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL P + L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPLTKHMSYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGVQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSLYM 410 >gi|10954244|gb|AAG25845.1| NADH dehydrogenase subunit 4 [Eulemur fulvus sanfordi] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 205/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + +++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYMGSLNLLT 178 Query: 197 L-YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|10954164|gb|AAG25781.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] gi|10954194|gb|AAG25805.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] gi|10954204|gb|AAG25813.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] gi|10954209|gb|AAG25817.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] gi|10954214|gb|AAG25821.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] gi|10954219|gb|AAG25825.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] gi|10954224|gb|AAG25829.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNSILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|254674623|dbj|BAH86167.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] Length = 452 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 213/377 (56%), Gaps = 11/377 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ LV+L+ +L P +++S + + ++ R ++I ++L S ++ AFL+ D+LLF Sbjct: 58 DFMSVALVILSVWLLPLMLIASQQHMAKDTGLYQRIFIICQVILTSALVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F+ YT GS+ +L +V ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFYTMVGSLPLLICLVGQ-YKMMGSLSLD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L M K + W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LILGGMYKGEYFTNLW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + ++ V+F L+L ++ + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGLMRISYA-WGASALLSGEVVFALALWGMVVMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI +G G GAM M++HGLVSS LF Y+R H+R++ G++ P Sbjct: 295 VGGIMTGTTWGYNGAMILMIAHGLVSSCLFSLANYWYERSHSRNLLGSRGMIILFPLMGA 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + ++ N+ LP T GE + +++V+ S + G VL+A YSL+++ +G Sbjct: 355 GWFIASLMNLALPPTINLFGELVAMVAVYNWSMFSVIFMGVGAVLTAAYSLYMFGMSQWG 414 Query: 435 VSKCEKVQQLKDLSLRE 451 E + L ++ RE Sbjct: 415 -EVLENYKNLHVMTSRE 430 >gi|95104638|gb|ABF51591.1| NADH dehydrogenase subunit 4 [Colobus angolensis] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 139/447 (31%), Positives = 231/447 (51%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T I SL F++ S+F + CS HL D ++ ++LT +L P Sbjct: 25 INLTTHGLIISLIPLLFFNQTNSNF----------FNCSTHLSSDPLTTPFLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 F ++S + + Y+ + L+ +I F++ +++LFYI FE +LIP +II Sbjct: 75 FMTMASQYHLHNESPSRKKLYLSMMIFLQVSLIMTFMATELILFYILFETTLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + + +I+ L ++ S Sbjct: 135 RWGIQAERLNAGTYFLFYTLTGSLPLLIMLLYIYNDLGSLNIMLLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAMLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 ++Y A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMIAHGLTSSMLFCLANSNYERTHSRIMMLPRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+ + F S+ +L ++++ALYSL +Y G + +K R Sbjct: 374 NLMGELLVVTTSFSWSHITIMLTGLNMLITALYSLHMYITTQRG-PLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVL----TVFFGIYP 469 E +++ PI +L ++ G+ P Sbjct: 433 ENLLMFMHLSPIILLSLNPSIIMGLTP 459 >gi|110432435|gb|ABG73768.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 199/372 (53%), Gaps = 28/372 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTMWLLPLTIMASQYHLTKEPSQRKKHFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP ++I WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLILITRWGNQTERLNAGLYFLFYTLVGSLPLLVAL----------SSIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMVTYWSQEMPNSWSNSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERVHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNVTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVS 436 L++ G S Sbjct: 408 LYMLTMTQRGKS 419 >gi|16519247|gb|AAL25143.1|AF224515_4 NADH dehydrogenase subunit 4 [Eulemur mongoz] gi|16519262|gb|AAL25155.1|AF224518_4 NADH dehydrogenase subunit 4 [Eulemur mongoz] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 202/353 (57%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + +E++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLMILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYTQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + + P S M W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MKYYLQEMPNSWSNNMLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +GI GA M++HGL SS LF Y+R+H+R + G+ +P A Sbjct: 298 VVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 358 WWLLASLTNLALPPSINLIGELFVVMASFSWSNITIILMGLNMLITALYSLYM 410 >gi|5835019|ref|NP_007078.1|ND4_10458 NADH dehydrogenase subunit 4 [Halichoerus grypus] gi|585598|sp|P38601|NU4M_HALGR RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|414767|emb|CAA50886.1| NADH-ubiquinone oxidoreductase subunit 4 [Halichoerus grypus] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 127/355 (35%), Positives = 198/355 (55%), Gaps = 10/355 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKEPLARKKLYITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLFIQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +I L+A P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 MIQLWA-QPLPSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L PL S + A LSL + S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITALLSPLTS-FMAYPFMMLSLWGMTMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERTHSRTMILARGLQVLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 356 AAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYSLYM 410 >gi|221145655|ref|YP_002519933.1| NADH dehydrogenase subunit 4 [Eubalichthys mosaicus] gi|219806707|dbj|BAH10365.1| NADH dehydrogenase subunit 4 [Eubalichthys mosaicus] Length = 460 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/359 (36%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S + EN + I+ L L+ +I AF + + Sbjct: 56 YLATDALSTPLLVLSCWLLPLMILASQNHMAPEPENRQRLYISLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 VMMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALSLLYVSTGTL 175 Query: 193 SIIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLVLQYSEPLHLSGLADKFW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLIVLDPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQTIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+ S L G +++A YSL+++ Sbjct: 354 PLMATWWFISSLANLALPPLPNLMGELMIITSLLNWSWWTIALTGLGTLITAGYSLYMF 412 >gi|165932447|ref|YP_001650849.1| NADH dehydrogenase subunit 4 [Microphis brachyurus] gi|154758844|dbj|BAF74986.1| NADH dehydrogenase subunit 4 [Microphis brachyurus] Length = 460 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 200/365 (54%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + + D +S L++L+ +L P IL+S R Y+ + L++ +I AF Sbjct: 52 FLNKLMATDPLSTPLLILSCWLLPLMILASQNHTANTPLNRQRAYISLLISLQAFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++V+ Sbjct: 112 SATELIMFYVMFEATLIPTLLIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLVL--- 168 Query: 189 KKTSSIIDLYAMSKFPF-----SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + + L + PF + MW+ +F +K+P++ H WLP AHV+AP AG Sbjct: 169 QTNMGSLSLLTIQYSPFMNMTSTADKLMWVGCLLAFLVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRLLVILDPLTKELGYPFII-LALWGIIMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V I GA+ M++HGL SSALF Y+R HTR + Sbjct: 288 AYSSVSHMGLVAAAILIQSPWAFTGALILMIAHGLTSSALFCLANTNYERTHTRTMILAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL MP A ++AN+ LP +GE +I S+F S +L G +++A Y Sbjct: 348 GLQMIMPLMAAWWFASSLANLALPPLPNLMGELNIITSLFSWSPWTILLTGLGTLITAGY 407 Query: 424 SLWLY 428 SL+L+ Sbjct: 408 SLYLF 412 >gi|157736001|ref|YP_001491223.1| NADH dehydrogenase subunit 4 [Luvarus imperialis] gi|139000505|dbj|BAF51734.1| NADH dehydrogenase subunit 4 [Luvarus imperialis] Length = 460 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 201/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 SPYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQFFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTG 173 Query: 191 TSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYANPILMTTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLVVLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|110432455|gb|ABG73784.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 199/372 (53%), Gaps = 28/372 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTMWLFPLTIMASQYHLTKEPSQRKKHFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQAERLNAGLYFLFYTLVGSLPLLVAL----------SSIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWSQEMSNSWSNSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L +I SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILSPL-TKFMAYPFLMMCLWGMIMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVS 436 L++ G S Sbjct: 408 LYMLTMTQRGKS 419 >gi|156073053|gb|ABU45869.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073058|gb|ABU45873.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073063|gb|ABU45877.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073068|gb|ABU45881.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073073|gb|ABU45885.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073078|gb|ABU45889.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073088|gb|ABU45897.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073098|gb|ABU45905.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073103|gb|ABU45909.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073113|gb|ABU45917.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073118|gb|ABU45921.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073178|gb|ABU45969.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 201/359 (55%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKEPWILKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALI---YTQNYMGSLN 175 Query: 197 LYAM----SKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + AM + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 MLAMKFYLQEMPNS---WSNNTLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V +GI GA M++HGL SS LF Y+R+H+R + G+ Sbjct: 292 SHMALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQAL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|148910954|gb|ABR18534.1| NADH dehydrogenase subunit 4 [Lutra lutra] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/389 (32%), Positives = 206/389 (52%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 VD +S L++LTT+L P +++S + + + Y+ + L+ ++I F + ++++ Sbjct: 58 VDSLSTPLLMLTTWLLPLMLMASQHHLSKETLTRKKLYITMLVTLQLLLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLW---LQNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NLLV-------IQYWAQPLPNSWSNMLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ A ++LK+GGYG +R + L PL + P LSL +I S + + QTD+K LI Sbjct: 228 SMVFAAVLLKLGGYGMMRITVLLNPLTNHMAYPFTM-LSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIMAVLIQSPWSYAGATALMVAHGLTSSLLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+MS F SN +L + ++ALY Sbjct: 347 GLQMLLPLMATWWLLASLTNLALPPTINLVGELFVVMSSFSWSNITIILMGVNITITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G ++ +K RE Sbjct: 407 SLYMLITTQRG-KLTHHIKNIKPSFTREN 434 >gi|190349506|ref|YP_001974718.1| NADH dehydrogenase subunit 4 [Arothron firmamentum] gi|89885672|dbj|BAE86952.1| NADH dehydrogenase subunit 4 [Arothron firmamentum] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 204/365 (55%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F S +L D +S L+VL+ +L P IL+S N + I+ L L+ +I AF Sbjct: 52 FLSPYLATDPLSTPLLVLSCWLLPLMILASQNHTTHEPINRQRMYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 AATEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 S+ L + P ++ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NSNGSLSLLTLLHTIPPQLSTYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LI Sbjct: 229 SMILAAVLLKLGGYGMMRILVTLEPLTKELSYPFII-LALWGVIMTGSICMRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + ++AN+ LP +GE ++I S+F S L G +++A Y Sbjct: 348 GLQMALPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIALTGLGTLITAGY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|10954174|gb|AAG25789.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWTLKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|289183003|ref|YP_003457001.1| NADH dehydrogenase subunit 4 [Rhynchactis macrothrix] gi|288909075|dbj|BAI77309.1| NADH dehydrogenase subunit 4 [Rhynchactis macrothrix] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 127/356 (35%), Positives = 200/356 (56%), Gaps = 10/356 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VL+ +L P IL+S + R Y+ +L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLSCWLLPLMILASQNHMASEPMARQRTYITLLTLLQLFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +L+FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 VLMFYIMFEATLIPTLILITRWGSQAERLNAGTYFLFYTLAGSLPLLVALLLLHNSTGSL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + P + + W W + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSAPLPLATYADKLW-WASCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAYSSI+ Sbjct: 235 VLLKLGGYGMVRVLTTLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSIS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + G+ + Sbjct: 294 HMGLVVGGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGMQTLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P + ++AN+ LP +GE +++ S+F S L G +++A YSL Sbjct: 354 PLMGTWWFIASLANLALPPLPNLMGELMILTSLFGWSYWTIALTGTGTLITAAYSL 409 >gi|25057551|ref|NP_739746.1| NADH dehydrogenase subunit 4 [Chaunax abei] gi|25005659|dbj|BAC23316.1| NADH dehydrogenase subunit 4 [Chaunax abei] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 204/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L++LT +L P IL+S ++ R Y++ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLILTCWLLPLMILASQNHMRPEPAGRQRTYIMLLTSLQIFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQNNTGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L ++ F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQYSTPIALTTFASKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMLVILNPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVVGGILIQTPWGFTGALTLMIAHGLTSSALFCLANTNYERTHSRTMILARGLQVLLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE +++ S+F S L G +++A YSL+++ Sbjct: 355 LMATWWFIASLANLALPPLPNLMGELMILTSLFNWSYWTIALTGGGTLITAGYSLYMF 412 >gi|322422416|ref|YP_004221844.1| NADH dehydrogenase subunit 4 [Brachyhypopomus pinnicaudatus] gi|317176617|dbj|BAJ54424.1| NADH dehydrogenase subunit 4 [Brachyhypopomus pinnicaudatus] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 137/391 (35%), Positives = 209/391 (53%), Gaps = 13/391 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S + D +S L++LT +L P I++S I+ R Y+ L+ +I AF Sbjct: 52 FSSPYSATDPLSSPLLILTCWLLPLMIIASQNHIRPEPLARQRTYITLLTSLQLFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++L+FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 GATELLMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + T S+ L P + W W +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 RDTGSLSLLLLPHLQPTLLNTWGDKIWWAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL + P I L+L II + + QTD+K LIA Sbjct: 230 MVLAAILLKLGGYGMMRVTVVLDPLTKETAYPFII-LALWGIIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVAAGILIQTPWGFSGAIILMIAHGLVSSALFCLANTTYERTHSRTMILARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L P A + +AN+ LP +GE ++I ++F S ++ G +++A YS Sbjct: 349 LQMIFPLTAFWWFIANLANLALPPLPNLMGELMIISALFNWSQWTIIITGAGTLITAAYS 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L L+ G + L+ RE ++ Sbjct: 409 LHLFLTTQRGPVPHHAL-NLQPFHTREHLLL 438 >gi|53686596|ref|YP_097228.1| NADH dehydrogenase subunit 4 [Hemidactylium scutatum] gi|51980019|gb|AAU20678.1| NADH dehydrogenase subunit 4 [Hemidactylium scutatum] Length = 455 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/381 (34%), Positives = 213/381 (55%), Gaps = 9/381 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDML 135 GVD IS L+ LT +LTP IL+S ++ N + Y+ F++L+ +I AF S +++ Sbjct: 57 GVDCISSPLLTLTCWLTPLMILASQNHLKNNPINRQQMYLSMFVMLQMALILAFSSTELV 116 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 FY+ FEA+LIP +II WG +ER+ A F YT S+ +L +++ + T S+ Sbjct: 117 FFYMAFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLLSSLPLLISLLYLSMTMNTISV 176 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L M + + +W+ +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 177 NLLNIMPEINTGNKI-LWLGCLTAFMVKMPLYGAHLWLPKAHVEAPVAGSMILAAVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG IR + LF +++ P I L+L I+ L+ QTD+K LIAYSS++HMG V Sbjct: 236 GGYGIIRITM-LFTPSTEVSYPFII-LALWGIMMTGLICTRQTDLKSLIAYSSVSHMGLV 293 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GA+ M+SHGLVSSALF Y+R ++R + GL +P + Sbjct: 294 VAAALIQTTWSFTGAVILMISHGLVSSALFCLANTNYERTYSRAMLLARGLQTMLPLMSA 353 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++F + NM LP T+ GE ++++S+F S ++ G +++A Y+L ++ G Sbjct: 354 WWLIFNLLNMALPPTTNLWGELVIMVSLFNWSPWTILITGLGTLITASYTLHMFTTTQRG 413 Query: 435 VSKCEKVQQLKDLSLRERCMV 455 + ++ + RE C++ Sbjct: 414 -KLPQHLEFMTPTFSREHCLM 433 >gi|322830728|ref|YP_004222798.1| NADH dehydrogenase subunit 4 [Merluccius merluccius] gi|317423530|emb|CBY85677.1| NADH dehydrogenase 4 [Merluccius merluccius] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 198/354 (55%), Gaps = 10/354 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDML 135 D +S L+VL+ +L P IL+S + R Y+ L+ +I AF + +M+ Sbjct: 58 ATDPLSTPLLVLSCWLLPLMILASQNHLSSEPLNRQRMYISLLTTLQLFLILAFSATEMI 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T S+ Sbjct: 118 MFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNNTGTLSL 177 Query: 195 IDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + ++ P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 178 LIIHYTKPLLFMPLGSKVW-WAACMIAFLVKMPLYGMHLWLPKAHVEAPIAGSMVLAAVL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGMMRLMIVLEPLSKEMIYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 296 GLVAAGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQVALPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 + ++AN+ LP +GE ++I+++F + +L G ++A YSL Sbjct: 356 MTSWWFIASLANLALPPLPNLMGELMIIIALFNWTPFSLILTGAGTFITAAYSL 409 >gi|110432460|gb|ABG73788.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 199/372 (53%), Gaps = 28/372 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTMWLFPLTIMASQYHLTKEPSQRKKHFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQAERLNAGLYFLFYTLVGSLPLLVAL----------SSIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWSQEMSNSWSNSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L +I SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILSPL-TKFMAYPFLMMCLWGMIMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVS 436 L++ G S Sbjct: 408 LYMLTMTQRGKS 419 >gi|74310529|ref|YP_313614.1| NADH dehydrogenase subunit 4 [Rousettus aegyptiacus] gi|73808009|dbj|BAE20241.1| NADH dehydrogenase subunit 4 [Rousettus aegyptiacus] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/403 (32%), Positives = 216/403 (53%), Gaps = 33/403 (8%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + I+E++ + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSTPLLMLTMWLLPLMIIASQFHLIKESYTRKKLYITMLILLQIFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WGG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLVPTLIIITRWGGQTERLNAGLYFLFYTLVGSLPLLVALIYL--QNILGSLNI 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L IQ+W +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LL--------IQHWSSPLTNSWSNSLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L P + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITTLLNP-TTNFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE V+MS F S L ++++ALYS Sbjct: 348 LQTVLPLMAAWWLLASLTNLALPPSINLIGELFVVMSTFSWSPLSIGLMGINIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 L++ G + + L RE + + P+ +L++ Sbjct: 408 LYMLIMTQRG-KQTHHISNLTPSYTRENTLMAMHILPLLLLSI 449 >gi|17981688|ref|NP_536767.1| NADH dehydrogenase subunit 4 [Dugong dugon] gi|24418582|sp|Q8W9M7|NU4M_DUGDU RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|17826757|emb|CAD18917.1| NADH dehydrogenase subunit 4 [Dugong dugon] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 135/399 (33%), Positives = 212/399 (53%), Gaps = 25/399 (6%) Query: 82 DGISILLVVLTTFLTPFCILSSWK--SIQENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S S + N R+ Y+ ++L+ +I F + +++L Sbjct: 59 DHLSTPLLILTTWLLPLMLMASQHHLSQESNTRKKSYITMLILLQLFLIMTFAATELILL 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP VII WG ER+ A F YT GSI +L +V + + T ++ Sbjct: 119 YIMFEATLIPTMVIITRWGNQPERLNAGLYFLFYTLLGSIPLLITLVSI---QNTLGTLN 175 Query: 197 L----YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L Y P S W +W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 LLIAPYWTQHLPDS---WSMNLLWLTCMMAFMVKMPLYGIHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R + L PL P + LSL ++ S + + QTD+K LIAYSS+ Sbjct: 233 AILLKLGGYGMMRITILLDPLTKSMAYPFLM-LSLWGMVMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSLLFCLANSNYERVHSRTMILARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A ++ + N+ LP T IGE +I++ F SN + F ++L+A Y+L++ Sbjct: 352 LPLMAAWWLLACLTNLALPPTINLIGELFIILASFSWSNYTILFMGFNMLLTASYTLYML 411 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + +K RE + + P+ +L++ Sbjct: 412 ITTQRG-KASHHAKTMKPSFTRENALMALHIIPLLLLSI 449 >gi|10954264|gb|AAG25861.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albifrons] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYMGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|25057238|ref|NP_740175.1| NADH dehydrogenase subunit 4 [Rhyacichthys aspro] gi|25006204|dbj|BAC23809.1| NADH dehydrogenase subunit 4 [Rhyacichthys aspro] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 197/358 (55%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + ++ Sbjct: 57 MATDALSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQIFLIMAFSATEV 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 LLFY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 LLFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTAGTLS 176 Query: 194 IIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L P + + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQYTPTLPMVTIADKMW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LIAYSS+ H Sbjct: 236 LLKLGGYGMMRMMILLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVGH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + G+ +P Sbjct: 295 MGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGMQMVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 355 LMTTWWFISSLANLALPPLPNLMGELMIITSLFNWSWWTIALTGTGTLITAGYSLYMF 412 >gi|164519161|ref|YP_001648860.1| NADH dehydrogenase subunit 4 [Hyla japonica] gi|164454421|dbj|BAF96760.1| NADH dehydrogenase subunit 4 [Hyla japonica] Length = 454 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 201/362 (55%), Gaps = 8/362 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + + +D IS L++LT +LT +L+S + + R Y+ ++L++ + AF Sbjct: 50 FLNSYFTIDQISSPLLILTCWLTAPTLLASQSKLSKEPMPRQRAYIFTIIILQATTLLAF 109 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 L+ +M+LF+I FE+++IP +II WG ER+ A YT FGS+ +L A++ Sbjct: 110 LADNMMLFFILFESTMIPTLIIITRWGAQKERMLAGTYLLFYTLFGSMALLTALLFFHET 169 Query: 189 KKTSSI--IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T SI I P + W A F +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 170 FGTLSISLIKDSMKELHPSACMLAWWAACFMAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 229 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LAG +LK+GGYG +R + AP+I F S+ ++ ++ + QTD+K LIA+S Sbjct: 230 LAGTLLKLGGYGILRISTIINDSFLNAAAPLIIF-SMFGVLLSAALCSRQTDLKSLIAFS 288 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V F + G++ M+SHGLVSSALF Y+R HTR + G Sbjct: 289 SVSHMGLVIAASFLKTDWSIAGSLILMISHGLVSSALFCLANTSYERTHTRTMIILQGSQ 348 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A ++ + NM LP + FIGE ++ S+FQ SN ++ ++ + YSL+ Sbjct: 349 IILPLSAAWWLMSALLNMALPPSPNFIGEMSILSSLFQWSNLTLIIMGISILFTTSYSLY 408 Query: 427 LY 428 ++ Sbjct: 409 MF 410 >gi|197311223|ref|YP_002154513.1| NADH dehydrogenase subunit 4 [Hyporhamphus sajori] gi|197304256|dbj|BAG69216.1| NADH dehydrogenase subunit 4 [Hyporhamphus sajori] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S + R Y+ L+ +I AF + Sbjct: 54 SSYLATDPLSSPLLVLTCWLLPLMILASQNHMMLEPTNRQRTYISLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEVIMFYIMFEATLIPTLFIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLLQNSSG 173 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + P ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLILQYATSPPLTSYADKIW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L +I A + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRIMVMLDPLTKELSYPFII-LALWGVIMAGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 ALPLMTAWWFLTSLANLALPPLPNLMGELMILTSLFNWSPWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|32526852|ref|NP_871757.1| NADH dehydrogenase subunit 4 [Hemiechinus auritus] gi|32469161|dbj|BAC78857.1| NADH dehydrogenase subunit 4 [Hemiechinus auritus] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 210/384 (54%), Gaps = 13/384 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG----AFLSLDMLL 136 D +S L++LTT+L P I++S +Q+ + F+ + ++ F + +MLL Sbjct: 58 TDNLSTPLLILTTWLLPLMIIASQHHLQKENLTHKKLFISMLILLQILLIMTFTASEMLL 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+LIP +II WG ER+ A Y F YT GS+ +L A++ + ++ S+ Sbjct: 118 FYILFEATLIPTLIIITRWGNQIERLNAGYYFLFYTLVGSLPLLVALLYL--KEMNGSMH 175 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++ + W +W++ +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 FIFIKLNTDYYSNNWSNSLLWLSCTMAFLVKMPLYGIHLWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + PL + + P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRINMLTEPLTNIMYYPFII-LSLWGMIMTSCICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIAAIMIQTPMSYMGATTLMIAHGLTSSLLFCLANTNYERTHSRTMLLTRGLQIMLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ ++ N+ LP T IGEFL++MS++ +N +L F ++++ LY+L++ Sbjct: 355 MTTWWLIASLNNLALPPTINLIGEFLILMSLYSWANFSIILTGFNMMITVLYTLYMIITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G+ ++ +K RE ++ Sbjct: 415 QRGL-PSHHIKSIKPSFTRENTLM 437 >gi|62510794|sp|Q85DA7|NU4M_LEPST RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|30466127|gb|AAP33655.1|AF224597_4 NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588182|gb|AAT35920.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588203|gb|AAT35924.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588230|gb|AAT35928.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588261|gb|AAT35932.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588296|gb|AAT35936.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588331|gb|AAT35940.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588356|gb|AAT35944.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588386|gb|AAT35948.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588415|gb|AAT35952.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588445|gb|AAT35956.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588472|gb|AAT35960.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588494|gb|AAT35964.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588521|gb|AAT35968.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588546|gb|AAT35972.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588573|gb|AAT35976.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588618|gb|AAT35980.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588642|gb|AAT35984.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588667|gb|AAT35988.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588692|gb|AAT35992.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588719|gb|AAT35996.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|47588743|gb|AAT36000.1| NADH dehydrogenase subunit 4 [Lepilemur septentrionalis] gi|110432934|gb|ABG74167.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432939|gb|ABG74171.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432944|gb|ABG74175.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432949|gb|ABG74179.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432954|gb|ABG74183.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432969|gb|ABG74195.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432979|gb|ABG74203.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432984|gb|ABG74207.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432989|gb|ABG74211.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110433069|gb|ABG74275.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110433074|gb|ABG74279.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110433079|gb|ABG74283.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110433084|gb|ABG74287.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110433089|gb|ABG74291.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/354 (35%), Positives = 196/354 (55%), Gaps = 14/354 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLLPLTIMASQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + +K ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QKHMGTLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + + W MW+A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YSL Sbjct: 355 MSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSL 408 >gi|301353458|ref|YP_003795680.1| NADH dehydrogenase subunit 4 [Miichthys miiuy] gi|300069602|gb|ADJ66705.1| NADH dehydrogenase subunit 4 [Miichthys miiuy] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 206/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWK--SIQENFREYMIAFLV--LESMVIGAF 129 F + ++ D +S L+VLT +L P IL+S +++ R+ M L+ L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLVLTCWLLPLMILASQNHTTLEPINRQRMFITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATELIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSK---FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L +S F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQFLSPAQLTTFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILPMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMTTWWFIASLANLALPPLPNLMGELMIITSLFSWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|225543954|gb|ACN91461.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 127/379 (33%), Positives = 205/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L P + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNP-XTNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|108767306|ref|YP_636040.1| NADH dehydrogenase subunit 4 [Lepisosteus osseus] gi|105873565|gb|ABF74796.1| NADH dehydrogenase subunit 4 [Lepisosteus osseus] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 202/366 (55%), Gaps = 12/366 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L +D +S L+VLT +L P I++S I R Y+ + L+ +I AF + + Sbjct: 56 YLAIDPLSTPLLVLTCWLLPLMIMASQNHISPEPINRQRMYISLLISLQVFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP II WG +ER+ A F YT GS+ +L A++ + +K Sbjct: 116 IILFYIMFEATLIPTLAIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLTL--QKDVG 173 Query: 193 SIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLLIQYSPPTLLPSWTNKIWWAACLLAFLVKMPLYGIHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L I + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMVVLLDPLTKELAYPFII-LALWGAIMTGSTCLRQTDLKALIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF +Y+R +TR + G+ Sbjct: 293 SHMGLVVGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTVYERTNTRTLLITRGMQTL 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P AV + ++AN+ LP GE ++ S+F S +L +++ +Y+++++ Sbjct: 353 LPLTAVWWFIASLANLALPPFPNLTGEMAIMASLFYWSEWTLILTGLAALITIIYTMYMF 412 Query: 429 RKVVFG 434 +G Sbjct: 413 MTTQWG 418 >gi|10954184|gb|AAG25797.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWTLKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|288909019|dbj|BAI77257.1| NADH dehydrogenase subunit 4 [Centrophryne spinulosus] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 202/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHMAPEPLNRQRMYITLLTFLQLFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + P + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSNPLPLATYADKLW-WTGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R L+ L P + P I F +L ++ + + QTD+K LIAYSS Sbjct: 233 AAILLKLGGYGMMRMLVILEPQTKELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P ++ ++AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 LLPLMTSWWLLTSLANLALPPVPNLMGELMILTSLFNWSYWTIALTGAGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|221164136|ref|YP_002519907.1| NADH dehydrogenase subunit 4 [Chaetodermis penicilligerus] gi|219806693|dbj|BAH10352.1| NADH dehydrogenase subunit 4 [Chaetodermis penicilligera] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 202/362 (55%), Gaps = 10/362 (2%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFL 130 + +L D +S L+VL+ +L P +L+S + Q R Y+ + L+ +I AF Sbjct: 53 ANSYLATDALSTPLLVLSCWLLPLMVLASQNHLANEPQNRQRLYISLLISLQIFLILAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ Sbjct: 113 ATEVMMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALSLLYSST 172 Query: 190 KTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ L S ++W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 GTLSLLILQYGEPLYLSTVADKFW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMLVILDPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A V ++AN+ LP +GE ++I S+ S L G +++A YSL+ Sbjct: 351 TILPLMASWWFVASLANLALPPLPNLMGELMIISSLLNWSPWTITLTGIGTLITAGYSLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|328671408|gb|AEB26576.1| NADH dehydrogenase subunit 4 [Nannoperca obscura] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FREYMIAFLV--LESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R+ M L+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQSHTASEPINRQRMFIMLLTSLQIFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEILMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTG 173 Query: 191 TSSIIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + P + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYFNPLPLLTNADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMTSWWFIASLANLALPPFPNLMGELMIITSLFSWSWWTIALTGTGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|5835900|ref|NP_008669.1|ND4_15075 NADH dehydrogenase subunit 4 [Salvelinus fontinalis] gi|5257519|gb|AAD41381.1|AF154850_10 NADH dehydrogenase subunit 4 [Salvelinus fontinalis] Length = 461 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 212/388 (54%), Gaps = 11/388 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPLNRQRTYISLLVSLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQNDSG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S+ L M + + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMFTLQYTKPMHLLTWGDKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VGHMGLVAGGIMIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P V ++AN+ LP +GE ++I S+F S +L G +++A YSL+L Sbjct: 352 VLPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSYWTLLLTGLGTLITASYSLYL 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + L+ RE ++ Sbjct: 412 FLMTQRGPLPSHII-ALEPTHTREHLLI 438 >gi|9695369|ref|NP_037591.1| NADH dehydrogenase subunit 4 [Paralichthys olivaceus] gi|6683103|dbj|BAA89042.1| NADH dehydrogenase subunit-4 [Paralichthys olivaceus] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 200/358 (55%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + ++ Sbjct: 57 MATDALSTPLLVLTCWLLPLMILASQNHTASEPINRQRMYITLLTSLQFFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSAGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L+ + + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLHYTDPTHMTSYGDKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P I F +L ++ + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMTMLEPLTKELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G+ G+ G++ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGVLIQSPWGLTGSLILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE ++I+S+F S L G +++A YSL+++ Sbjct: 355 LMATWWFIASLANLALPPLPNLMGELMIIISLFNWSWWTLALTGTGTLITAGYSLYMF 412 >gi|294774441|dbj|BAJ05718.1| NADH dehydrogenase subunit 4 [Canis lupus] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 203/389 (52%), Gaps = 29/389 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLY---------IHN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 F IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 FMGFLNF-LMIQYWIQSLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KYSYHIKNIKPSFTRENA 435 >gi|212725588|ref|YP_002317333.1| NADH dehydrogenase subunit 4 [Lutjanus kasmira] gi|211906783|gb|ACJ11889.1| NADH dehydrogenase subunit 4 [Lutjanus kasmira] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L YA + ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYANPLQLTTYADKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVVLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLILTGAGTLITAGYSLYMF 412 >gi|197311080|ref|YP_002154487.1| NADH dehydrogenase subunit 4 [Tylochromis polylepis] gi|197304635|dbj|BAG69559.1| NADH dehydrogenase subunit 4 [Tylochromis polylepis] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 201/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S ++ D +S L+ LT +L P I++S + R Y+ L+ +I AF Sbjct: 52 FLSLYMATDPLSTPLLALTCWLLPLMIIASQNHMTTEPTTRQRTYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP VII WG ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYIMFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLAGSLPLLIALLLLQNY 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L+ ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 AGTLSLLTLHFTPPAHLSSYADKLW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I L+L ++ + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRMMIMLDPLTKELSYPFII-LALWGVVMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLVTTWWFITSLANLALPPLPNLMGELMIITSLFNWSWWTIALTGAGTLITAAYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|115531661|ref|YP_783992.1| NADH dehydrogenase subunit 4 [Plectropomus leopardus] gi|68302024|gb|AAY89408.1| NADH dehydrogenase subunit 4 [Plectropomus leopardus] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTAREPISRQRMYITLLTSLQIFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++V+ T Sbjct: 116 IIMFYVMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLVLQNHSGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S+ + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLPYTCPLQLSMNTDKLW-WVGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R +L L PL + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMILVLDPLTKELGYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVIGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP + E ++I+S+F S +L G +++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMAELMIIVSLFNWSWWTLILTGAGTLITASYSLYMF 412 >gi|10954179|gb|AAG25793.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWTLKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNSILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|30466137|gb|AAP33663.1|AF224644_4 NADH dehydrogenase subunit 4 [Galago senegalensis] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 206/384 (53%), Gaps = 14/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P ++S + + + Y+ + L+ +I F + +++L Sbjct: 58 DTLSTPLLILTTWLLPLMTMASQHHLTKEPLTRKKLYITMLISLQVFLIITFSASELILV 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS---S 193 YI FE +LIP +II WG +ER+ A F LYT GS+ +L I++ S S Sbjct: 118 YILFETTLIPTLIIITRWGNQTERLNAGLYFLLYTLLGSLPLL-VILIHTQNSMGSLNLS 176 Query: 194 IIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 I+ Y MS FP+S W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 177 ILSFYFQDMSIFPWSNNL-TWMACMLAFLVKMPLYGTHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P+ P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITYILNPITDLMSYPFLI-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS +F Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMMFCLANSNYERIHSRTMTLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A+ + ++AN+ LP T IGE ++I++ F S +L +++A+YSL+++ Sbjct: 355 MAIWWLTASLANLALPPTINLIGELIIIITTFSWSKLTILLTGLNTLITAVYSLYMFITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G +K RE ++ Sbjct: 415 QRG-KPTYHTHNIKPSHTRENILM 437 >gi|110432675|gb|ABG73960.1| NADH dehydrogenase subunit 4 [Lepilemur randrianasoli] gi|110432680|gb|ABG73964.1| NADH dehydrogenase subunit 4 [Lepilemur randrianasoli] gi|110432685|gb|ABG73968.1| NADH dehydrogenase subunit 4 [Lepilemur randrianasoli] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/402 (32%), Positives = 208/402 (51%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++L +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILAMWLFPLMIMASQCHLAKEPWERKKHFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SSIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWTQELTNSWSSSLMWVACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMMRITIILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + +GE L+ M+ F SN VL ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLVGELLITMASFSWSNMTIVLTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G L+ M V+P+ +LT+ Sbjct: 408 LYMLMMTQRGEPPYHAHNFNPSLTRENTLMSMHVFPLLLLTL 449 >gi|88061948|gb|ABD38953.1| NADH dehydrogenase subunit 4 [Leiostomus xanthurus] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLVLTCWLLPLMILASQNHTAHEPINRQRMYITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L + F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQFSNPVQLITFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILPMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A V ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMATWWFVASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|315142660|gb|ADT82578.1| NADH dehydrogenase subunit 4L [Nomascus leucogenys] Length = 390 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/373 (34%), Positives = 201/373 (53%), Gaps = 13/373 (3%) Query: 93 TFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 T+L P I++S + R+ Y+ + L+ +I F + ++++FYI FE +LIP Sbjct: 1 TWLLPLMIMASQHHLSNESLLRKKLYLSMLITLQVSLIMTFTATELMMFYILFETTLIPT 60 Query: 149 FVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 +II WG ER+ A F YT GS+ +L A++ + +I+ L S P Sbjct: 61 LIIITRWGNQPERLNAGSYFLFYTLVGSLPLLIALIHTHNTLGSLNIMLLTLSS--PSLA 118 Query: 208 QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFL 263 W MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R Sbjct: 119 NSWSNNIMWLACVMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLT 178 Query: 264 LPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMK 323 L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM V I Sbjct: 179 LILSPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTP 237 Query: 324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMAN 383 GA M++HGL SS LF Y+R H+R + GL +P A + ++AN Sbjct: 238 WSFTGATVLMIAHGLTSSLLFCLANSNYERTHSRTMILSRGLQILLPLMAFWWLTASLAN 297 Query: 384 MGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ 443 + LP T +GE V+M+ F +NT L ++++ALYSL+++ G + ++ Sbjct: 298 LALPPTINLLGELFVLMASFSWANTTIALTGLNMLITALYSLYMFITTQRG-TLTHHIKN 356 Query: 444 LKDLSLRERCMVY 456 +K RE +++ Sbjct: 357 MKPSLTRENMLMF 369 >gi|312233405|ref|YP_004021640.1| NADH dehydrogenase subunit 4 [Leggadina lakedownensis] gi|161621711|gb|ABX75325.1| NADH dehydrogenase subunit 4 [Leggadina lakedownensis] Length = 458 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 136/396 (34%), Positives = 218/396 (55%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S ++ E F + Y+ + L+ ++I F +++LF Sbjct: 58 DPLSTPLIILTTWLLPLMLMASQNHLKKEKFVYQKLYVSMLISLQILLILTFSVTELILF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP VII WG +ER+ A F YT GSI +L A++ + + ++ ++ Sbjct: 118 YILFEATLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSIPLLIALISI---QNSTGTLN 174 Query: 197 LYAMSKFPFSIQY-W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 +S I W +W++ +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 175 FLILSLTTTHINNTWSNNILWLSCMMAFLIKMPLYGVHLWLPKAHVEAPIAGSMILAAIL 234 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL + P + LS+ +I S + + QTD+K LIAYSS++HM Sbjct: 235 LKLGGYGMMRVAIILDPLTNHMCYPFML-LSMWGMIMTSSICLRQTDLKSLIAYSSVSHM 293 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 294 ALVIASIMIQTPWSFMGATMLMIAHGLTSSLLFCLANSNYERIHSRTMIMARGLQMIFPL 353 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A++ ++ ++AN+ LP + IGE + MS+F N +L +V++ALYS+++ Sbjct: 354 MAMMWLLGSLANLALPPSINLIGELFITMSLFSWCNISIILIGLNIVITALYSMYMIIMT 413 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + V P+ +LT+ Sbjct: 414 QRG-KLTSHMNNLQPSHTRELALMTLHVIPLILLTI 448 >gi|133755335|ref|NP_008610.2|ND4_15064 NADH dehydrogenase subunit 4 [Erinaceus europaeus] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 210/376 (55%), Gaps = 24/376 (6%) Query: 66 EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-L 121 +YY W +Y D IS L++LTT+L P I++S +Q+ N +++ I+ L+ L Sbjct: 45 QYYMWTSSSITYF--SDHISTPLLILTTWLLPLMIIASQYHLQKENLNQKKFYISMLIFL 102 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLF 180 + ++I F + +M LFYI FEA+LIP VII WG ER+ A F YT GS+ +L Sbjct: 103 QILLIMTFTASEMFLFYILFEATLIPTLVIITRWGNQIERLNAGSYFLFYTLTGSLPLLV 162 Query: 181 AIVVMCWEKKT---------SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 A++ KK S I D Y M + S+ +W++ +F +K+P++ H W Sbjct: 163 ALLY---LKKMNYSTHFVFMSLISDHYTM-DWSNSL---LWLSCMMAFMVKMPLYGIHLW 215 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP AHV+AP AGS+ LA I+LK+GGYG +R + P+ S + P I LSL +I S Sbjct: 216 LPKAHVEAPIAGSMILAAILLKLGGYGMMRINMLTAPITSTMYYPFII-LSLWGMIMTSC 274 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 + + QTD+K LIAYSS++HM V I GA M++HGL SS +F Y Sbjct: 275 ICLRQTDLKSLIAYSSVSHMALVIAAIMIQTPLSYMGATTLMIAHGLTSSLMFCLANTNY 334 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R H+R +F GL+ +P A ++ ++ N+ LP T IGE ++MS++ S + Sbjct: 335 ERTHSRTMFLTRGLLIILPLMATWWLIASLNNLALPPTINLIGELFILMSLYSWSKFTII 394 Query: 412 LASFGVVLSALYSLWL 427 L ++++ Y+L++ Sbjct: 395 LTGLNMMITVSYTLYM 410 >gi|11602900|ref|NP_071651.1| NADH dehydrogenase subunit 4 [Pteropus scapulatus] gi|11545684|gb|AAG37921.1|AF321050_9 NADH dehydrogenase subunit 4 [Pteropus scapulatus] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 196/363 (53%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSTPLLMLTMWLLPLMIIASQFHLTKETYTRKKLYITMLISLQIFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ M + S+ Sbjct: 119 YILFEATLVPTLIIITRWGAQTERLNAGLYFLFYTLVGSLPLLVALIYM--QNIAGSLNI 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LLT--------QYWSEPLTNSWGNSFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L P S + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITTVLSPTTS-FMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE V+MS F S+ +L +V++ALYS Sbjct: 348 LQTVLPLMAAWWLLASLTNLALPPSINLIGELFVVMSTFSWSSISIILMGINIVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|157736099|ref|YP_001491457.1| NADH dehydrogenase subunit 4 [Lutjanus rivulatus] gi|157679312|dbj|BAF80372.1| NADH dehydrogenase subunit 4 [Lutjanus rivulatus] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 202/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 SPYMATDPLSTPLLVLTCWLLPLMILASQNHTASEPINRQRMYITLLTSLQIFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTAG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSNPLQLTTYADKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLVVLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLILTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|110432465|gb|ABG73792.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 199/372 (53%), Gaps = 28/372 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTMWLFPLTIMASQYHLTKEPSQRKKHFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQAERLNAGLYFLFYTLVGSLPLLVAL----------SSIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWSQEMSNSWSNSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L +I SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILSPL-TKFMAYPFLMMCLWGMIMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVS 436 L++ G S Sbjct: 408 LYMLTLTQRGKS 419 >gi|10954229|gb|AAG25833.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073143|gb|ABU45941.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073148|gb|ABU45945.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073153|gb|ABU45949.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073158|gb|ABU45953.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073168|gb|ABU45961.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073173|gb|ABU45965.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073183|gb|ABU45973.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073188|gb|ABU45977.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073193|gb|ABU45981.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 199/359 (55%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKEPWILKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIY------TQNYLG 172 Query: 197 LYAMSKFPFSIQY----W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 M F +Q W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 173 SLNMLTMKFYLQEMPNSWSNNTLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL +++ A L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITMILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V +GI GA M++HGL SS LF Y+R+H+R + G+ Sbjct: 292 SHMALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQAL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|49616812|ref|YP_044722.1| NADH dehydrogenase subunit 4 [Abronia graminea] gi|49256968|dbj|BAD24772.1| NADH dehydrogenase subunit 4 [Abronia graminea] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 197/358 (55%), Gaps = 14/358 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L++L+ +L P +S +Q R Y++A L++++I F + D+ L Sbjct: 59 TDSLSAPLLILSCWLLPLMSTASQNHLQHEPQIRKRMYLVALATLQTLLIMTFTASDLTL 118 Query: 137 FYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FY+ FEA+L+P +II WG +ER+ A F YT S+ +L AI+ + K + Sbjct: 119 FYVMFEATLVPTLIIITRWGHQTERLSAGIYFLFYTIASSLPLLIAILYL---NKNLLLT 175 Query: 196 DLYAMSKFPFSIQY-W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +++ + +Q W +W +F +K+PM+ H WLP AHV+AP AGS+ LA I Sbjct: 176 NIHILHMLQPKLQNSWSHTALWYGCLLAFMVKMPMYGLHLWLPKAHVEAPIAGSMVLAAI 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR L PL P + L+L I+ S + + QTD+K +IAYSSI+H Sbjct: 236 LLKLGGYGVIRMSTTLLPLTMTLAYPFLI-LALWGILMTSSICLRQTDLKAMIAYSSISH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V + G+ GA F M++HGL SS LF Y+R ++R + GL +P Sbjct: 295 MGLVICATLIQTQWGLCGATFLMIAHGLTSSMLFCLANTNYERTNSRTLLLTRGLHLILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + +ANM LP + +GE ++I S F +NT ++ G +L+A YSL+++ Sbjct: 355 MMTFWWLTANLANMALPPSINLMGELIIITSTFNWANTSIIMTGIGTLLTASYSLYMF 412 >gi|24817358|gb|AAN64716.1|AF224526_4 NADH dehydrogenase subunit 4 [Eulemur rubriventer] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/356 (34%), Positives = 202/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + +E++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLMILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PLA P + L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPLAKHMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|28268840|gb|AAO37921.1|AF224580_4 NADH dehydrogenase subunit 4 [Hapalemur griseus occidentalis] Length = 458 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 201/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ ++I F + +++ F Sbjct: 59 DSLSSPLVILTMWLLPLMIMASQHHLTKEPWILKKLYLSMLISLQMLLIMTFTATELIYF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI---QNYLGSLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L MS + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 LSTMSLCFQELPNSWSNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+G YG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGSYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVAILIQTPWSFMGATVLMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLFASLTNLALPPSINLIGELLVIMASFSWSNITIILMGLNMLITALYSLYMLTTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|262399645|gb|ACY65605.1| NADH dehydrogenase subunit 4 [Pan troglodytes verus] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 220/396 (55%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + T ++ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALI---YTHNTLGSLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + ++ + W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 ILLLTLTTQELSNTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 355 MAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + +K RE +++ PI +L++ Sbjct: 415 QWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|47589357|gb|AAT36097.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 211/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P +++S K E + ++ + L+ +++ F + ++++F Sbjct: 59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP VII WG +ER+ A F YT GS+ +L V + + + + ++ Sbjct: 119 YILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLL---VALSYIQSSMGTLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ +++N+ LP + IGE LV + F SNT +L ++++A YSL++ Sbjct: 355 MSTWWLLASLSNLALPPSINLIGELLVTTAAFSWSNTTIILTGLNMLVTATYSLYMLTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S +Q RE ++ Sbjct: 415 QRGKSPYH-MQNFSPSLTRENTLM 437 >gi|6691432|ref|NP_033647.1|ND4_15157 NADH dehydrogenase subunit 4 [Lampetra fluviatilis] gi|6523339|emb|CAB62223.1| NADH dehydrogenase subunit 4 [Lampetra fluviatilis] Length = 458 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 135/357 (37%), Positives = 204/357 (57%), Gaps = 12/357 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESMVIG-AFLSLDM 134 L +D S L++L+ +L P I++S ++ ++ MI+ L+L +++ F + ++ Sbjct: 57 LSIDQFSCPLIMLSCWLLPLTIMASQAHMKTEPITRQKTMISLLILLQVLLCITFGASNL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FYI FE +LIP +II WG ER+ A F YT S+ +L A++++ + S Sbjct: 117 LMFYIAFETTLIPTLLIITRWGNQKERLTAGLYFLFYTLSASLPLLLALIMIQTHLNSLS 176 Query: 194 -----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + DL +S P+S W W+A F +F IK+P++ FH WLP AHV+AP AGS+ LA Sbjct: 177 TYIIPLSDLSLLSNTPWSEALW-WVACFLAFLIKMPLYIFHLWLPKAHVEAPIAGSMVLA 235 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG IR PL P + +++ +I S + + QTD+K +IAYSS+ Sbjct: 236 AILLKLGGYGMIRMSSLFIPLTKDLAIPFMI-IAMWGMIVTSSICLRQTDLKSMIAYSSV 294 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GIF+ GA+ M++HGLVSS LF + Y+R HTR IF GL Sbjct: 295 SHMGLVVAGIFTMTPWAWSGALAMMIAHGLVSSGLFCLANITYERTHTRSIFMNRGLQAL 354 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P + ++ T ANM LP F+ E L+I S+F SN + + L+AL+SL Sbjct: 355 FPLMSFWWLMMTFANMALPPFPNFMAEILIITSLFSWSNWTIIPLGLSMTLTALFSL 411 >gi|223976158|ref|YP_002601094.1| NADH dehydrogenase subunit 4 [Pecari tajacu] gi|223972355|dbj|BAH23389.1| NADH dehydrogenase subunit 4 [Pecari tajacu] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/392 (33%), Positives = 209/392 (53%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S K + Y+ ++L+ +++ F + +++LF Sbjct: 59 DSLSAPLLILTTWLLPLMLMASQFHLSKEPSARKKLYITMLVLLQLLLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P +II WG +ER+ A F YT GS+ +L A++ + + T Sbjct: 119 YILFESTLVPTLIIITRWGNQAERLNAGLYFLFYTLAGSLPLLVALI---YTQNT----- 170 Query: 197 LYAMSKFPFSI-QYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M F I QYW MW+A +F +K+P++ H WLP AHV+AP AG Sbjct: 171 ---MGSLNFLILQYWANTLTDTWSNTLMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L L PL + P + LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMLRITLILNPLTNSMAYPFLM-LSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANTNYERVHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A+ ++ + N+ LP + IGE VIMS F SN +L ++++ LY Sbjct: 347 GLQTLLPLMAMWWLMAGLTNLALPPSINLIGELFVIMSSFMWSNMTIILMGLNMLITTLY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +L++ G + +K RE ++ Sbjct: 407 TLYMLITTQRG-KYTHHINNIKPSFTRENTLM 437 >gi|262399617|gb|ACY65579.1| NADH dehydrogenase subunit 4 [Pan troglodytes vellerosus] gi|295293628|gb|ADF88165.1| NADH dehydrogenase subunit 4 [Pan troglodytes ellioti] Length = 459 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 220/396 (55%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + T ++ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALI---YTHNTLGSLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + ++ + W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 ILLLTLTTQELSNTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 355 MAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + +K RE +++ PI +L++ Sbjct: 415 QWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|221145515|ref|YP_002519725.1| NADH dehydrogenase subunit 4 [Rhinecanthus aculeatus] gi|219806903|dbj|BAH10274.1| NADH dehydrogenase subunit 4 [Rhinecanthus aculeatus] Length = 460 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 209/362 (57%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK--SIQENFREYM-IAFLV-LESMVIGAFLS 131 S +L DG+S L+VLT +L P IL+S +++ + R+ M I+ L L+ +I AF + Sbjct: 54 SPYLATDGLSTPLLVLTCWLLPLMILASQNHLTLEPHNRQRMYISLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEVLMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQ-NTT 172 Query: 191 TSSIIDLYAMSKFP----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + + + F ++ ++W W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 GTLSLLTLQHTTFACTNTWADKFW-WVGCMLAFLVKMPLYGAHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMLTVLDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 MALPLMAAWWFLASLANLALPPLPNLMGELMIITSLFSWSWWTLALTGAGTLITAGYSLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|53686358|ref|YP_097254.1| NADH dehydrogenase subunit 4 [Phaeognathus hubrichti] gi|51980047|gb|AAU20704.1| NADH dehydrogenase subunit 4 [Phaeognathus hubrichti] Length = 457 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/390 (33%), Positives = 211/390 (54%), Gaps = 16/390 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++G+D IS L+VLT +L P IL+S ++ + + Y+ F +L+ +I AF S Sbjct: 53 NKYMGIDSISSPLLVLTCWLLPLMILASQNHLKNDPICRQQMYISMFTILQMTLILAFSS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 113 TELIMFYIAFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLFLYNNTN 172 Query: 191 TSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + S+ L M + + +W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 173 SLSMEVLTIMPQMFLMTTTNKILWFGCLTAFMVKMPLYGAHLWLPKAHVEAPVAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG IR L PL + +I L+L I+ L+ + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGIIRITLMFTPLIELSYPFII--LALWGILMTGLICIRQTDLKSLIAYSSV 290 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GA+ M+SHGL+SS LF Y+R H+R + GL Sbjct: 291 SHMGLVVAATLIQTPWSFTGAIILMISHGLISSTLFCLANTNYERTHSRTMLLARGLQTT 350 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A ++ + NM LP T GE +++S+F S ++ G +++A Y+L ++ Sbjct: 351 LPLMATWWLMSNLFNMALPPTPNLWGELTIMVSLFNWSPWTILILGLGTLITAAYTLHMF 410 Query: 429 RKVVFGVSKCEKVQQLKDLS---LRERCMV 455 + + LK+ + RE C++ Sbjct: 411 ----LLTQRGHLPKHLKNTTPTFTREHCLM 436 >gi|221143438|ref|YP_002519455.1| NADH dehydrogenase subunit 4 [Monacanthus chinensis] gi|219806735|dbj|BAH10391.1| NADH dehydrogenase subunit 4 [Monacanthus chinensis] Length = 460 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLD 133 ++ D +S L+VL+ +L P IL+S + EN + I+ L L+ +I AF + + Sbjct: 56 YMATDALSTPLLVLSCWLLPLMILASQNHLAPEPENRQRLYISLLTSLQIFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 VMMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALSLLYTTTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILQYSEPLHLSTLADKFW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVILDPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQTVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+ S L G +++A YSL+++ Sbjct: 354 PLMATWWFISSLANLALPPLPNLMGELMIITSLLNWSWWTIALTGVGTLITAGYSLYMF 412 >gi|148922778|ref|YP_001293784.1| NADH dehydrogenase subunit 4 [Nematalosa japonica] gi|148762656|dbj|BAF64097.1| NADH dehydrogenase subunit 4 [Nematalosa japonica] Length = 460 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 133/386 (34%), Positives = 209/386 (54%), Gaps = 11/386 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSAPLLVLTCWLLPLMILASQNHTRTEPAPRQRMYITLLASLQTFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 IIMFYIMFEATLVPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLQASTGSL 175 Query: 193 SIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L + + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMITLNFGQPLMLLSWGDKIW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRMSSILDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 294 HMGLVAAGILIQTPWGLTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 354 PLTATWWFIANLANLALPPLPNLMGEIMIITTMFNWSPWTLILTGVGTLITAGYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L RE ++ Sbjct: 414 MSQRGPTPAHII-GLTPYHTREHLLI 438 >gi|55139566|gb|AAV41409.1| NADH dehydrogenase subunit 4 [Panthera onca] Length = 456 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/363 (34%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ +VL+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETLARKKLYITTLIVLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLLGSLPLLVALLYI---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWAKPISATWSNILLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P LSL ++ S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPTTNQMAYP-FMMLSLWGMVMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYTGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+++ F SN L ++++ALY+ Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIGELFVVVASFSWSNLTITLMGTNIIITALYT 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|238866844|ref|YP_002929305.1| NADH dehydrogenase subunit 4 [Galago senegalensis] gi|238809365|dbj|BAH69191.1| NADH dehydrogenase subunit 4 [Galago senegalensis] Length = 459 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 206/384 (53%), Gaps = 14/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P ++S + + + Y+ + L+ +I F + +++LF Sbjct: 58 DTLSTPLLILTTWLLPLMTMASQHHLTKEPLTRKKLYITMLISLQVFLIVTFSASELILF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS---S 193 YI FE +LIP +II WG +ER+ A F YT GS+ +L I++ S S Sbjct: 118 YILFETTLIPTLIIITRWGNQTERLNAGLYFLFYTLLGSLPLL-VILIHTQNLMGSLNLS 176 Query: 194 IIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 I+ Y MS FP+S W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 177 ILSFYFQDMSIFPWSNNL-TWLACMLAFLVKMPLYGTHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P+ P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITYILNPITDLMSYPFLI-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS +F Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMMFCLANSNYERIHSRTMTLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A+ + ++AN+ LP T IGE ++I++ F S +L +++A+YSL+++ Sbjct: 355 MAIWWLTASLANLALPPTINLIGELIIIITTFSWSKLTILLTGLNTLITAIYSLYMFITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G +K RE ++ Sbjct: 415 QRG-KPTYHTHNIKPSHTRENILM 437 >gi|110432840|gb|ABG74092.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] Length = 459 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/384 (33%), Positives = 210/384 (54%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P +++S K E + ++ + L+ +++ F + ++++F Sbjct: 59 DPLSSPLLVLTMWLLPLTVMASQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L V + + + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLL---VALSYIQSSMGTLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPNSWSSYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPLTKPMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERIHSRTMLLARGLQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ +++N+ LP + IGE LV M+ F SNT +L ++ +A YSL++ Sbjct: 355 MSTWWLLASLSNLALPPSINLIGELLVTMAAFSWSNTTIILTGLNMLATATYSLYMLTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G +Q RE ++ Sbjct: 415 QRG-KPSYHMQNFNPSLTRENTLM 437 >gi|221145585|ref|YP_002519855.1| NADH dehydrogenase subunit 4 [Acanthaluteres brownii] gi|219806931|dbj|BAH10300.1| NADH dehydrogenase subunit 4 [Acanthaluteres brownii] Length = 460 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 200/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S + + R Y+ L+ +I AF + + Sbjct: 56 YLATDALSTPLLVLSCWLLPLMILASQNHMAPEPESRQRLYICLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 VMMFYVMFEATLIPTLILITRWGNQTERLRAGVYFLFYTLAGSLPLLVALSLLYVSTGTL 175 Query: 193 SIIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S ++W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILQYSEPLQLSGLADKFW-WMGCMLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLTVLDPLTKEMSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R HTR + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHTRTMVLARGLQTVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+ S L G +++A YSL+++ Sbjct: 354 PLMATWWFISSLANLALPPLPNLMGELMIITSLLNWSWWTIALTGTGTLITAGYSLYMF 412 >gi|166851956|ref|YP_001661442.1| NADH dehydrogenase subunit 4 [Eremitalpa granti] gi|166788100|emb|CAP17690.1| NADH dehydrogenase subunit 4 [Eremitalpa granti] Length = 459 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/383 (34%), Positives = 215/383 (56%), Gaps = 13/383 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW-----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L++LTT+L P +++S +SI + Y+ + L+ +I F + +++L Sbjct: 59 DALSTPLLILTTWLLPLMLMASQFHLNMESIIRK-KTYISMLITLQIFLILTFTASELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ + +I+ Sbjct: 118 FYILFEATLIPTLILITRWGNQTERLNAGLYFLFYTLIGSLPLLVALTLLQNNMGSLNIL 177 Query: 196 DLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + + K P + + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 178 LIQFIIK-PLTPSFSSNFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P + LSL ++ SL+ + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRISIVLEPLNYSMAFPFMM-LSLWGMVMTSLICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I G GA M++HGL SS +F Y+R+H+R + GL +P Sbjct: 296 LVIAAILIQTPWGFMGATALMIAHGLTSSMMFCLANTNYERIHSRTMILARGLQSILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A+ + ++AN+ LP T FIGE + ++VF SN +L ++++ALYSL++ Sbjct: 356 ALWWLTISLANLALPPTINFIGELFITLTVFSWSNFSLLLMGLNMLITALYSLYMLITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMV 455 G + +K RE ++ Sbjct: 416 RG-KPSYHINSIKPSFTRENALM 437 >gi|107736838|ref|YP_626470.1| NADH dehydrogenase subunit 4 [Branchiostoma japonicum] gi|88697001|gb|ABD48676.1| NADH dehydrogenase subunit 4 [Branchiostoma japonicum] Length = 452 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 213/377 (56%), Gaps = 11/377 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ LV+L+ +L P +++S + + ++ R ++I ++L S ++ AFL+ D+LLF Sbjct: 58 DFMSVALVILSVWLLPLMLIASQQHMAKDTGLYQRIFIICQVILTSALVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F+ YT GS+ +L +V ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFYTMVGSLPLLICLVGQ-YKMMGSLSLD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L M K + W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LILGGMYKGEYFTNLW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + ++ V+F L+L ++ + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGLMRISYA-WGASALLSGEVVFALALWGMVVMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI +G G GAM M++HGLVSS LF Y+R H+R++ G++ P Sbjct: 295 VGGIMTGTTWGYNGAMILMIAHGLVSSCLFSLANYWYERSHSRNLLGSRGMIILFPLMGA 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + ++ N+ LP T GE + +++V+ S + G VL+A YSL+++ +G Sbjct: 355 GWFIASLMNLALPPTINLFGELVAMVAVYNWSMFSVIFMGVGAVLTAAYSLYMFGMSQWG 414 Query: 435 VSKCEKVQQLKDLSLRE 451 E + L ++ RE Sbjct: 415 -EVLENYKNLHVMTSRE 430 >gi|177543289|gb|ACB73025.1| NADH dehydrogenase subunit 4 [Colobus angolensis palliatus] Length = 459 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 133/410 (32%), Positives = 218/410 (53%), Gaps = 17/410 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFL 130 CS HL D ++ L++LT +L P I++S + + Y+ + L+ +I F+ Sbjct: 52 CSTHLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPSRKKLYLSMMIFLQISLIMTFM 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L ++ + + Sbjct: 112 ATELILFYILFETTLIPTLIIITRWGIQAERLNAGTYFLFYTLTGSLPLLIMLLYIYNDL 171 Query: 190 KTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + +I+ L ++ S +W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLNIMFLTLTAQKLTSTWSHNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L P+ ++Y A LSL +I S + + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMR-LTPILDPLTEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVIMASLIQTPWSFTGAIILMIAHGLTSSMLFCLANSNYERTHSRIMMLSRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + + N+ LP T +GE LV+ + F S+ +L ++++ALYSL + Sbjct: 351 LLPLMAFWWFMANLTNLALPPTINLVGELLVVTTSFSWSHITIMLTGLNMLITALYSLHM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVL----TVFFGIYP 469 Y G + +K RE +++ PI +L ++ G+ P Sbjct: 411 YITTQRG-PLTHHITNIKPSFTRENMLMFMHLSPIILLSLNPSIIMGLTP 459 >gi|14602417|ref|NP_148760.1| NADH dehydrogenase subunit 4 [Arctoscopus japonicus] gi|14588615|dbj|BAB61807.1| NADH dehydrogenase subunit 4 [Arctoscopus japonicus] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 202/368 (54%), Gaps = 30/368 (8%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 L D +S L+VLT +L P IL+S K R Y+I L+ +I AF + ++ Sbjct: 57 LATDTLSTPLLVLTCWLLPLMILASQKHTASEPLNRQRTYLILLTSLQIFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + ++ Sbjct: 117 IMFYVMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLL---QNSAG 173 Query: 194 IIDLYAMSKFPFSIQY-------------WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + L F+IQY W W +F +K+P++ H WLP AHV+AP Sbjct: 174 TLSL-------FTIQYSDPVELTSYAHKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAP 225 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGS+ LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K Sbjct: 226 VAGSMILAAVLLKLGGYGMMRMVVMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLK 284 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 LIAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 285 ALIAYSSVSHMGLVVGGILIQTPWGFTGALVLMIAHGLASSALFCLANTSYERTHSRTML 344 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL +P + ++AN+ LP +GE ++I S+F S L G +++ Sbjct: 345 LARGLQMVLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIALTGAGTLIT 404 Query: 421 ALYSLWLY 428 A YSL+++ Sbjct: 405 ASYSLYMF 412 >gi|47588929|gb|AAT36032.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 199/359 (55%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLALTMWLLPLTIMASQYHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QNHMGTLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L+ M+ + P S W MW+A +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 LFMMTYWSQELPNS---WSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R + L PL +++ A L L +I SL+ + QTD+K LIAYSS+ Sbjct: 233 AILLKLGGYGMMRITMILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YSL++ Sbjct: 352 LPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYM 410 >gi|108793276|ref|YP_637045.1| NADH dehydrogenase subunit 4 [Petaurus breviceps] gi|94481197|dbj|BAE94002.1| NADH dehydrogenase subunit 4 [Petaurus breviceps] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/358 (34%), Positives = 199/358 (55%), Gaps = 14/358 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L+VL+ +L P +++S K + Y+ ++L+ +I AF S +M++ Sbjct: 58 MDSLSSPLIVLSCWLLPLMMIASQGHLTKESMNRKKIYVTMLILLQLSLIMAFSSSEMIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++ M S + Sbjct: 118 FYILFETTLIPTLIVITRWGNQNERLNAGLYFLFYTLVGSLPLLVALLQM---YTNSGSL 174 Query: 196 DLYAMSKFPFSIQ-----YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ S P ++ +W A +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 HIFMNSMLPQAMNPSISNSTLWFACMIAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + P+ + + P I LSL +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGIMRITIFTEPITTNLYYPFII-LSLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 294 MGLVIVAALMQSTLSFMGATTLMIAHGLTSSMLFCLANTNYERIHSRTLMLARGLQTALP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++ ++ N+ LP T +GE VI++ F SN +L V++ LYSL+++ Sbjct: 354 LMCIWWLMASLTNLALPPTINLLGELKVIVASFSWSNFSIILLGLNTVITGLYSLYMF 411 >gi|46917265|dbj|BAD18046.1| NADH dehydrogenase subunits 4 [Gazza minuta] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 200/364 (54%), Gaps = 10/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + R Y+I L+S++I AF S ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHMTPEPPTRQRTYIILLTSLQSLLILAFSSTEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++V+ T S Sbjct: 117 MMFYITFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLVSSLPLLVALLVLQNTTGTLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 177 LLTLQFNPHMPLSSTSDKLW-WAGCLMAFLVKMPLYGAHLWLPKAHVEAPVAGSMILAAI 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL Q P I L+L +I + + Q+D+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIVPLLDPLTKQLSYPFII-LALWGMIMTGTICLRQSDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G GA+ M++HGL SSALF Y+R H R + GL +P Sbjct: 295 MGLVVAGALLQTPWSFSGALILMIAHGLTSSALFCLANTNYERTHNRTMLLTRGLQTALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A +F++AN+ LP +GE +VI S+F S L G +++A YSL+++ Sbjct: 355 LMAAWWFIFSLANLALPPLPNLMGELMVISSLFNWSPWTLFLTGAGTLITAGYSLYMFLT 414 Query: 431 VVFG 434 G Sbjct: 415 TQRG 418 >gi|207849011|ref|YP_002221509.1| NADH dehydrogenase subunit 4 [Canis lupus laniger] gi|197941128|gb|ACH78264.1| NADH dehydrogenase subunit 4 [Canis lupus laniger] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V++S F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVVSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|157736113|ref|YP_001491470.1| NADH dehydrogenase subunit 4 [Chaetodon auripes] gi|157679326|dbj|BAF80385.1| NADH dehydrogenase subunit 4 [Chaetodon auripes] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 208/384 (54%), Gaps = 21/384 (5%) Query: 69 HWIDYFC-------SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIA 117 HW++ S ++ D +S L++LT +L P IL+S + R Y+ Sbjct: 40 HWLENMSEVGWSHLSTYMATDPLSTPLLILTCWLLPLMILASQNHTKHEPVSRQRMYITL 99 Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSI 176 L+ ++I AF + ++++FY+ FEA+LIP +II WG ER+ A F YT S+ Sbjct: 100 LTSLQILLIMAFGATELMMFYVMFEATLIPTLIIITRWGNQKERLNAGMYFLFYTLASSL 159 Query: 177 FMLFAIVVMCWEKKTSSIIDLYA---MSKFPF--SIQYWMWIAFFCSFAIKIPMFPFHTW 231 +L A++++ +K ++ L A ++ P S + W W+A +F +K+P++ H W Sbjct: 160 PLLVALLML--QKNVGTLSLLPAPLPITGMPMTSSTKLW-WVACLLAFLVKMPLYGAHLW 216 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP AHV+AP AGS+ LA ++LK+GGYG +R L L PL + P I L+L ++ Sbjct: 217 LPKAHVEAPIAGSMILAAVLLKLGGYGMMRMLPMLEPLTKELSYPFIL-LALWGVVMTGS 275 Query: 292 VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 + M QTD+K LIAYSS++HMG V I + GAM M++HGL SSA+F Y Sbjct: 276 ICMRQTDLKSLIAYSSVSHMGLVIAAILIQSPWALSGAMILMIAHGLTSSAMFCLANTAY 335 Query: 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV 411 +R H+R + G+ +P ++AN+ LP +GE +I S+F S + Sbjct: 336 ERTHSRTMLLTRGMQMVLPLMVSWWFAASLANLALPPLPNLMGELAIITSLFNWSPWTII 395 Query: 412 LASFGVVLSALYSLWLYRKVVFGV 435 L G +++A Y+L+++ + G Sbjct: 396 LTGAGTLITAGYTLYMFLSIQRGT 419 >gi|221145501|ref|YP_002519712.1| NADH dehydrogenase subunit 4 [Brachaluteres ulvarum] gi|219806637|dbj|BAH10339.1| NADH dehydrogenase subunit 4 [Brachaluteres ulvarum] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 202/362 (55%), Gaps = 10/362 (2%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI---QENFREYMIAFLV-LESMVIGAFL 130 + +L D +S L+VL+ +L P IL+S + EN + I+ L L+ +I AF Sbjct: 53 TNLYLATDTLSTPLLVLSCWLLPLMILASQNHLGPEPENRQRLYISLLTSLQIFLILAFG 112 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + +M++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ Sbjct: 113 ATEMMMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALSLLYVTT 172 Query: 190 KTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ L ++W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 DTLSLLILQFSEPLHLHTPADKFW-WTGCMLAFLVKMPLYGAHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMIMVLDPLTKELSYPFII-LALWGIIMTGTICLQQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R+H+R I L Sbjct: 291 SVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERMHSRTIVLARSLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + ++AN+ LP +GE ++I ++ S L G +++A YSL+ Sbjct: 351 SILPLMATWWFISSLANLALPPLPNLMGELMIITALLNWSWWTIALTGLGTLITAGYSLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|168251471|gb|ACA22107.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 136/402 (33%), Positives = 220/402 (54%), Gaps = 17/402 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LT +L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSPTFSSDPLTTPLLMLTAWLLPLTIMASQRHLSSEPLSRKKLYLSMLISLQISLIMTFT 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ Sbjct: 112 ATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTL 171 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + +I+ L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 GSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSM 229 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAY Sbjct: 230 VLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SSI+HM V I GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 289 SSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGL 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ ++AN+ LP T +GE V+++ F SN +L ++++ALYSL Sbjct: 349 QTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWSNITLLLTGLNMLVTALYSL 408 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +++ +G S + +K RE +++ PI +L++ Sbjct: 409 YMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLSL 449 >gi|242097317|emb|CAY40053.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 134/383 (34%), Positives = 209/383 (54%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ ++I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLILLQLLLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P VII WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLVIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLHT--QNNLGSLN 175 Query: 196 DL---YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLMMQYWIQPLPNSWSSIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTLLNPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T IGE V+++ F SN L ++++ALYS LY + Sbjct: 355 MAAWWLLASLTNLALPPTINLIGELFVVVATFSWSNITITLMGTNIIITALYS--LYMLI 412 Query: 432 VFGVSKC-EKVQQLKDLSLRERC 453 KC + V+ +K RE Sbjct: 413 TTQRGKCTDHVKSIKPSFTRENA 435 >gi|25057252|ref|NP_740188.1| NADH dehydrogenase subunit 4 [Eleotris acanthopoma] gi|25006218|dbj|BAC23822.1| NADH dehydrogenase subunit 4 [Eleotris acanthopoma] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 201/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 +Y + D +S L+VLT +L P IL+S R Y+ + L+ +I AF + Sbjct: 54 NYFMATDPLSTPLLVLTCWLLPLMILASQNHTMPEPINRQRMYITLLISLQMFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEVILFYIMFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTAG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L A S + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYTPAPSMISVADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVMLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VGHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMMLARGLQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP + E ++I+S+F S L G +++A YSL++ Sbjct: 352 VLPLMTAWWFIASLANLALPPLPNLMAELMIIVSLFNWSWWTIALTGGGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|25057480|ref|NP_739655.1| NADH dehydrogenase subunit 4 [Bassozetus zenkevitchi] gi|25005519|dbj|BAC23186.1| NADH dehydrogenase subunit 4 [Bassozetus zenkevitchi] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 205/364 (56%), Gaps = 10/364 (2%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGA 128 Y + ++ +D +S L+VLT +L P IL+S + R Y+ L+ +I A Sbjct: 51 YTLNPYMALDPLSTPLLVLTCWLLPLMILASQNHTRSEPVNRQRTYITLLASLQFFLILA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + ++L+FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L +++++ Sbjct: 111 FSATEILMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVSLLLLQN 170 Query: 188 EKKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + T S++ L S + W W +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 DTGTLSLLTLQFSETAQLSTYADKLW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMMRMMIVLEPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVAGGILIQTAWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++AN+ LP +GE ++I S+F SN +L G +++A YS Sbjct: 349 LQMVLPLMTTWWFIASLANLALPPLPNLMGELMIITSLFGWSNWTLLLTGTGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|310788918|gb|ADP24462.1| NADH dehydrogenase subunit 4 [Oreichthys cosuatis] Length = 458 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 139/399 (34%), Positives = 220/399 (55%), Gaps = 17/399 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I+ R Y++ L++ +I AF + + Sbjct: 54 YLATDPLSTPLLVLTCWLLPLMILASQNHIKPEPISRQRSYIMLLASLQTFLILAFGATE 113 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA++IP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 114 IIMFYIMFEATIIPTLIIITRWGNQTERLKAGTYFLFYTLTGSLPLLVALLLL--QQSTG 171 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 172 TLSVLILQYSQPLQLNSWSHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 231 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 232 AVLLKLGGYGMMRMMIMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 290 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 291 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMLLARGLQAI 350 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 351 FPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPWTIMLTGLGTLITAGYSLYMF 410 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + + + L+ RE + + PI +L V Sbjct: 411 LMSQRGPTP-KHIMNLQPFHTREHLLMILHLTPIMLLMV 448 >gi|10954274|gb|AAG25869.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albifrons] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYMGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNSILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLGSLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|283099243|ref|YP_003359214.1| NADH dehydrogenase subunit 4 [Acheilognathus signifer] gi|146142353|gb|ABQ01617.1| NADH dehydrogenase subunit 4 [Acheilognathus signifer] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 133/360 (36%), Positives = 202/360 (56%), Gaps = 14/360 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NEYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYISLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLLLLVALLLLQQSAG 173 Query: 191 TSSIIDL-YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ + YA P + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSLLVVQYAQ---PLVLDSWSDKIWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL+ + P + L+L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMIMLDPLSKELAYPFVI-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSMLFCLANTAYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P AV + +AN+ LP +GE ++I ++F S T L G +++A YSL Sbjct: 350 QMIFPLTAVWWFIANLANLALPPLPNLMGELMIIATLFNWSPTTIALTGLGTLITAGYSL 409 >gi|315142576|gb|ADT82500.1| NADH dehydrogenase subunit 4L [Symphalangus syndactylus] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/352 (33%), Positives = 192/352 (54%), Gaps = 21/352 (5%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ ++L++ +I F + ++++FYI FE +LIP +II WG ER+ A F Y Sbjct: 93 KLYLSMLIILQTSLIMTFTATELMMFYILFETTLIPTLIIITRWGNQPERLNAGSYFLFY 152 Query: 171 TFFGSIFMLFAIV----------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 T GS+ +L A++ +M + ++ D ++ MW+A+ +F Sbjct: 153 TLVGSLPLLIALIHTHNTLGSLNIMLLNLSSQNLTDSWS--------NNLMWLAYMMAFM 204 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A Sbjct: 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLM 263 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL +I S + + QTD+K LIAYSS++HM V I GA+ M++HGL S Sbjct: 264 LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFTGAIVLMIAHGLTS 323 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S LF Y+R H+R + GL P A ++ +AN+ LP T +GE V+M Sbjct: 324 SLLFCLANSNYERTHSRIMILSRGLQTLFPLMAFWWLMANLANLALPPTINLLGELFVLM 383 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 + F +NT +L ++++ALYSL+++ G+ ++ +K RE Sbjct: 384 ASFSWANTTIMLTGLNMLITALYSLYMFIMTQRGM-LTHHIKNMKPSLTREN 434 >gi|306977512|gb|ADN12002.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] Length = 452 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 202/369 (54%), Gaps = 16/369 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSWK--SIQENFREYMIAFLVLESMVIGAFLSLDM---- 134 +D I+ L +L+T+L P IL++ + + N R+ M FL+ +M+ L Sbjct: 59 LDHITTPLTILSTWLLPLMILANQNLTTFEPNNRKRM--FLMTCAMLQTTLLLTFTTTDL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY FE +L+P ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 117 VMFYTLFETTLVPTLILITRWGAQAERLNAGTYFIFYTLTGSLPLLIALLYIH-STNNHT 175 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 +I + M + + MW+A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK Sbjct: 176 LIPILTMQQPTPPLTNLMWLACMTAFLIKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLK 235 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG IR L L P P I L+L +I SL+ + QTD+K +IAYSS++HMG Sbjct: 236 LGGYGIIRLTLTLTPTTQTMHFPFI-VLALWGMIMTSLICLRQTDLKSIIAYSSVSHMGL 294 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 VT + GAM M++HGL SS LF V Y+R HTR + GL +P Sbjct: 295 VTAASLIQTPWSIHGAMLLMIAHGLTSSMLFCLVNTNYERTHTRTLLLVRGLQLALPLMT 354 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ + NM LP T +GE ++I+++F + T +L +++A+YSL +F Sbjct: 355 TWWLLSNLMNMALPPTINLLGELMIIITLFNWNMTTIILTGSATLITAMYSL-----HIF 409 Query: 434 GVSKCEKVQ 442 ++ K+Q Sbjct: 410 LTTQQNKLQ 418 >gi|197311094|ref|YP_002154591.1| NADH dehydrogenase subunit 4 [Etroplus maculatus] gi|197304579|dbj|BAG69507.1| NADH dehydrogenase subunit 4 [Etroplus maculatus] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 199/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTASEPINRQRMYITLLTSLQIFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +L+FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 ILMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQNNAGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQFTPYSPLSSTADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIMLEPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G G++ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAAGILIQTPWGFTGSLILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+ S +L G +++A YSL+++ Sbjct: 354 PLMGAWWFISSLANLALPPLPNLMGELMIITSLLNWSWWTILLTGAGTLITASYSLYMF 412 >gi|83779499|gb|ABC47560.1| NADH dehydrogenase subunit 4 [Platyrrhinus helleri] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/329 (36%), Positives = 184/329 (55%), Gaps = 24/329 (7%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + +++LFYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KSYITMLILLQVFLIMTFTATELILFYILFEATLLPTLIIITRWGNQAERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW------------MWIAFFCS 218 T GS+ +L A+V I +L F + QYW +W+A + Sbjct: 153 TLVGSLPLLVALV---------HIQNLTGTLNFLLT-QYWTTPLPTSWSTTLLWLACMTA 202 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + + A Sbjct: 203 FMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITILLEPL-TDFMAYPF 261 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL +I S + + QTD+K LIAYSS++HM V + + GA M++HGL Sbjct: 262 MMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAVLIQTPWSFMGATALMIAHGL 321 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 SS LF Y+R+H+R + GL +P A ++ ++ N+ LP T IGE + Sbjct: 322 TSSMLFCLANSNYERVHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELYI 381 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +M++F SN +L +VL+ALYSL++ Sbjct: 382 VMAMFSWSNLSLILLGLNIVLTALYSLYM 410 >gi|295293670|gb|ADF88204.1| NADH dehydrogenase subunit 4 [Pan troglodytes verus] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 220/396 (55%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + T ++ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALI---YTHNTLGSLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + ++ + W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 ILLLTLTTQELSNTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 355 MAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + +K RE +++ PI +L++ Sbjct: 415 QWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|289183045|ref|YP_003457040.1| NADH dehydrogenase subunit 4 [Melanocetus johnsoni] gi|288908865|dbj|BAI77114.1| NADH dehydrogenase subunit 4 [Melanocetus johnsoni] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHMTPEPLNRQRMYITLLASLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP ++I WG ++R+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLILITRWGNQTQRLNAGTYFLFYTLAGSLPLLVALLLLQNTTGTL 175 Query: 193 SIIDLYAMSK---FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ S ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTFQYSSPALLTTYADKLW-WAGCLLAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I F +L ++ S + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGTMRNLVTLEPLTKELSYPFIIF-ALWGVVMTSSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GAM M++HGL SSALF Y+R H+R + G+ + Sbjct: 294 HMGLVVGGILIQTPWGFSGAMILMIAHGLTSSALFCLANTQYERTHSRTMILARGMQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S L G +++A YSL+++ Sbjct: 354 PLMTSWWFIASLANLALPPLPNLMGELMILTSLFNWSPWTIALTGAGTLITATYSLYMF 412 >gi|256427370|ref|YP_003127129.1| NADH dehydrogenase subunit 4 [Toxotes chatareus] gi|256353287|dbj|BAH97801.1| NADH dehydrogenase subunit 4 [Toxotes chatareus] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHMTPEPINRQRMYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L A+ ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITLQYTNAIQLSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L L + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMIALEALTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLAATWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMF 412 >gi|162145727|gb|ABX82900.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097331|emb|CAY40079.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097345|emb|CAY40105.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097359|emb|CAY40132.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097373|emb|CAY40159.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097569|emb|CAY40532.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097583|emb|CAY40558.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097597|emb|CAY40584.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] gi|242097653|emb|CAY40690.1| NADH dehydrogenase subunit 4 [Ursus spelaeus] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 133/383 (34%), Positives = 209/383 (54%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ ++I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLILLQLLLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLHT--QNNLGSLN 175 Query: 196 DL---YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLMMQYWIQPLPNSWSSIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTLLNPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP T IGE V+++ F SN L ++++ALYS LY + Sbjct: 355 MAAWWLLASLTNLALPPTINLIGELFVVVATFSWSNITITLMGTNIIITALYS--LYMLI 412 Query: 432 VFGVSKC-EKVQQLKDLSLRERC 453 KC + V+ +K RE Sbjct: 413 TTQRGKCTDHVKSIKPSFTRENA 435 >gi|40804702|ref|NP_955727.1| NADH dehydrogenase subunit 4 [Auxis thazard] gi|40714151|dbj|BAD06786.1| NADH dehydrogenase subunit 4 [Auxis thazard] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 200/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDSLSTPLLVLTCWLLPLMILASQNHTALEPVNRQRMYITLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + F + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSAPLQLVSFGDKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSYWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|280978051|ref|YP_003345004.1| NADH dehydrogenase subunit 4 [Pythonichthys microphthalmus] gi|271280218|dbj|BAI53168.1| NADH dehydrogenase subunit 4 [Pythonichthys microphthalmus] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 210/386 (54%), Gaps = 13/386 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VL+ +L P IL+S + R ++ L+ + AF + ++ Sbjct: 57 IATDPLSTPLLVLSCWLLPLMILASQNHMMPEPINRQRTFITLLTSLQIFLTLAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYVMFEATLIPTLIVITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLILHKDLGTLS 176 Query: 194 IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 ++ + + P S+ W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 MLTIQFTT--PMSLTTWGDKLWWAACLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R + L PL + P I L+L II + + QTD+K +IAYSS++ Sbjct: 235 VLLKLGGYGMMRMTIVLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLILARGLQTVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELMIITSMFNWSYWTIILTGLGTLITAGYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + + RE ++ Sbjct: 414 MTQRGPTPTHIISTEPSYT-REHLLI 438 >gi|170292911|gb|ACB12495.1| NADH dehydrogenase subunit 4 [Pseudolabrus sieboldi] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 202/361 (55%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++GVD +S L+VL+ +L P I++S + R Y+ + L+S +I AF + + Sbjct: 56 YMGVDPLSSPLLVLSCWLLPLMIIASQNHMSSEPIHRQRLYITLMISLQSFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 VIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNTTG 173 Query: 193 SIIDLYAMSKFPF-----SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+ L P + +W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSMLTLQYAKPLVYSSHADNFW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRILIILDPLTKELGYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R HTR + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFAGALILMIAHGLTSSALFCLANTNYERTHTRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P V ++AN+ LP + E +VI +F S L G +++A YSL++ Sbjct: 352 ALPLMTTWWFVASLANLALPPLPNLMAELMVITGMFNWSWWTLALTGTGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|134303096|ref|YP_001122781.1| NADH dehydrogenase subunit 4 [Bombina variegata] gi|61724664|gb|AAX53884.1| NADH dehydrogenase subunit 4 [Bombina variegata] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 134/402 (33%), Positives = 214/402 (53%), Gaps = 17/402 (4%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGA 128 +F ++ L VD +S L++L+ +L P I++S + R Y+ L+ +I A Sbjct: 50 HFTTHILSVDQLSSPLLILSCWLLPIMIIASQNHLATEPLNRQRTYITTLTSLQIALIVA 109 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + +++LFYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++ + Sbjct: 110 FSATELILFYITFEITLIPTLMLITRWGNQAERLNAGIYFLFYTLMGSLPLLVALLSL-- 167 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + ++ L P + W W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 168 QNSEGTLSTLLMQLDTPTMLISWANKAWWLACLIAFMVKMPLYGAHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA I+LK+GGYG +R L L P + A L+L +I S + + QTD+K +I Sbjct: 228 SMVLAAILLKLGGYGIMRISL-LLPTSMNDLAYPFIILALWGVIMTSSICLRQTDLKSMI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GA+ M++HGLVSSALF Y+R H+R + Sbjct: 287 AYSSVSHMGLVIAAAMIQTPWSFSGAIVLMVAHGLVSSALFCLANTNYERTHSRTLLLSR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ +P ++ +ANM LP + +GE V++++F SN +L G +L+A Y Sbjct: 347 GMQIILPLMGAWWLLSNLANMALPPSPNLMGELSVMVAMFNWSNWTILLTGSGTLLTAAY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVL 461 SL+++ G + + + L RE + + PIA L Sbjct: 407 SLYMFLMTQRGPTP-QHLTALNPTHTREHTLMLLHLLPIAPL 447 >gi|294486046|gb|ADE87895.1| NADH dehydrogenase subunit 4 [Ochotona roylei] Length = 404 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF---REYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + +++LF Sbjct: 3 DPLSTPLLILTFWLLPLMLIASQNHLSKETLSRKKLFISMLVLLQIFLIMTFSATELILF 62 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ M T + + Sbjct: 63 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYMHNTTGTLNFLI 122 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + M++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 123 IQLMAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 181 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 182 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 240 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 241 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERTHSRTMILARGLQTILPLMA 300 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE L+IMS F SN +LA ++++ALY+L++ Sbjct: 301 AWWLLASLANLALPPSINLIGELLIIMSSFSWSNLTIILAGTNMLITALYTLYMLSTTQR 360 Query: 434 G 434 G Sbjct: 361 G 361 >gi|222837023|ref|YP_002586864.1| NADH dehydrogenase subunit 4 [Gyrinomimus sp. UW 113191] gi|222051568|dbj|BAH15255.1| NADH dehydrogenase subunit 4 [Gyrinomimus sp. UW 113191] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 205/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P I++S + E R Y+ L+ +I AF + Sbjct: 54 SLYMAADPLSAPLLVLTCWLLPLAIIASQNHMLEEPLARQRTYISLLTFLQLFLILAFTA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TELIMFYIMFEATLIPTLMIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNDTG 173 Query: 191 TSSIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L ++ + W W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLTLPFSKTQQLESYADKAW-WLGCIMAFLVKMPLYGMHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F + AS + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRVMVMLDPLTKELSYPFIIFALYVTWSTAS-ICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTSWGFTGALTLMIAHGLASSALFCLANTNYERTHSRTMILARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + ++AN+ LP +GE ++I ++F S ++ G V++A YSL+L Sbjct: 352 LLPLMASWWFIASLANLALPPLPNLMGELMIISALFNWSPWSLLITGTGTVITASYSLYL 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|110432390|gb|ABG73732.1| NADH dehydrogenase subunit 4 [Lepilemur aeeclis] gi|110432395|gb|ABG73736.1| NADH dehydrogenase subunit 4 [Lepilemur aeeclis] gi|110432400|gb|ABG73740.1| NADH dehydrogenase subunit 4 [Lepilemur aeeclis] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 200/368 (54%), Gaps = 20/368 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++I + L+ +I F + ++++F Sbjct: 59 DPLSSPLLALTMWLLPLTIMASQHHLSKEPWERKKYFLITLISLQLFLIMTFAATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP VII WG +ER+ A F YT GS+ +L A+ + + ++ Sbjct: 119 YILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QNHMGTLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L+ M+ + P S W W+A +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 LFMMTYWSQELPNS---WSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R + L PL +++ A L L ++ SL+ + QTD+K LIAYSS+ Sbjct: 233 AILLKLGGYGMMRITMILNPL-TKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R H R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERTHNRTMLLTRGLQSL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YSL++ Sbjct: 352 LPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYML 411 Query: 429 RKVVFGVS 436 G S Sbjct: 412 AMTQRGKS 419 >gi|108793500|ref|YP_636980.1| NADH dehydrogenase subunit 4 [Aspasma minima] gi|25006190|dbj|BAC23796.1| NADH dehydrogenase subunit 4 [Aspasma minima] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/390 (32%), Positives = 210/390 (53%), Gaps = 11/390 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F + ++ D +SI L+ LT +L P I++S N + I L+ L+ +I AF Sbjct: 52 FLNSYMATDALSIPLLTLTCWLLPLMIMASQNHTAHEPFNRKRLFITLLISLQVFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +M++FY+ FEA+LIP ++I WG ++R+ A F +T GS+ +L A++ + Sbjct: 112 SSTEMMMFYVMFEATLIPTLILITRWGNQAQRLNAGTYFLFFTLAGSLPLLVALLTLQSY 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + P + + W W+ +F +K P++ H WLP AHV+AP AGS+ Sbjct: 172 SGSLSLLTLISTPDLPLTTLGDKIW-WLGCLAAFLVKAPLYGLHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA I+LK+GGYG +R + L P++++ P+I L+L ++ S + + QTD+K LIAY Sbjct: 231 ILAAILLKLGGYGMMRITMALGPISTKLSYPLIM-LALWGVVMTSSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG VT I GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVTAAILIQTPLAYSGALILMIAHGLTSSALFCLANTNYERTHSRTLLLTRGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE +I S+ S G++++A Y+L Sbjct: 350 QTALPLMAFWWLFSSVANLALPPLPNLMGELFIITSLCNWSLGSLAFTGTGMLITAAYTL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + L RE ++ Sbjct: 410 HMFLTTQQGPLPAH-ILSLSPTHTREHLLI 438 >gi|115494827|ref|YP_778756.1| NADH dehydrogenase subunit 4 [Arctocephalus townsendi] gi|115344895|emb|CAJ56945.1| NADH dehydrogenase subunit 4 [Arctocephalus townsendi] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/348 (35%), Positives = 191/348 (54%), Gaps = 11/348 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFAATELIMFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS-IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A++ M T + ++ Y P S W +W+A +F +K+P+ Sbjct: 153 TLVGSLPLLVALLYMQNNMGTLNFLMTQYWTQTLPNS---WSSILLWLACMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S + A LS+ Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLNPLTS-FMAYPFMMLSMWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPLSYMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R H+R + GL +P A ++ ++ N+ LP T IGE LV+M+ F Sbjct: 329 LANSNYERTHSRIMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELLVVMASFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SN +L ++++ALYSL++ G ++ +K RE Sbjct: 389 SNATIILMGVNIIITALYSLYMLITTQRG-KHTHHIKNIKPSFTRENT 435 >gi|121622382|ref|YP_980213.1| NADH dehydrogenase subunit 4 [Heloderma suspectum] gi|121309399|dbj|BAF44014.1| NADH dehydrogenase subunit 4 [Heloderma suspectum] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/392 (31%), Positives = 209/392 (53%), Gaps = 10/392 (2%) Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI-QENFREYMIAFLVLESMVIGAFL 130 Y + +L +D IS LV L+ +L P +++S + QE F F+ L + + F+ Sbjct: 50 QYSINNYLAIDPISAPLVALSCWLLPLMMMASQNHLNQEPFNRKQAFFITLTMLQVSLFM 109 Query: 131 SL---DMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 S ++++FYI FE +LIP +II WG ER+ A F YT S+ +L A++ + Sbjct: 110 SFTASNLMMFYIMFETTLIPTLIIITRWGNQMERLSAGIYFLFYTLLSSLPLLIALLFIN 169 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWM--WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + + + L+ + + P + +M W+ F +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 NKMSLTFLPYLHLLQQEPMNSWSYMMLWLGCFMAFFVKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L LFP+++ L+L I+ S + + QTD+K +IA Sbjct: 230 MVLAAILLKLGGYGILRISL-LFPMSTSTLYYPFLILALWGIMMTSSICLRQTDLKAMIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V + + GA+ M++HGL SS LF + Y+R +R + G Sbjct: 289 YSSVSHMGLVISSTLIQTQWSLSGAILLMIAHGLTSSMLFCLANMNYERTKSRTLLITQG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P ++ + NM LP + +GE L++ S+ S ++ G +L+A YS Sbjct: 349 LHLILPMMTFWWLIACLTNMALPPSINLMGELLIMTSMMNWSPPTIIITGLGTLLTACYS 408 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 L+++ G + L RE +++ Sbjct: 409 LYMFTMTQHGKPPLHMI--LNPTHTREHLLMF 438 >gi|254674525|dbj|BAH86076.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] Length = 452 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 213/377 (56%), Gaps = 11/377 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ LV+L+ +L P +++S + + ++ R ++I ++L S ++ AFL+ D+LLF Sbjct: 58 DFMSVALVILSVWLLPLMLIASQQHMAKDTGLYQRIFIICQVILTSALVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F+ YT GS+ +L +V ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFYTMVGSLPLLICLVGQ-YKMMGSLSLD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L K + W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LVLGGTYKGEYFTNLW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + ++ V+F L+L ++ + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGLMRISYA-WGASALLSGEVVFALALWGMVVMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI +G G GAM M++HGLVSS LF Y+R H+R++ G++ P V Sbjct: 295 VGGIMTGTTWGYNGAMILMIAHGLVSSCLFSLANYWYERSHSRNLLGSRGMIILFPLMGV 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + ++ N+ LP T GE + +++V+ S + G VL+A YSL+++ +G Sbjct: 355 GWFIASLMNLALPPTINLFGELVAMVAVYNWSMFSVIFMGVGAVLTAAYSLYMFGMSQWG 414 Query: 435 VSKCEKVQQLKDLSLRE 451 E + L ++ RE Sbjct: 415 -EVLENYKNLHVMTSRE 430 >gi|221144508|ref|YP_002519595.1| NADH dehydrogenase subunit 4 [Paramonacanthus choirocephalus] gi|219806791|dbj|BAH10443.1| NADH dehydrogenase subunit 4 [Paramonacanthus choirocephalus] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLD 133 ++ D +S L+VL+ +L P IL+S + EN + I L L+ +I AF + + Sbjct: 56 YMATDALSTPLLVLSCWLLPLMILASQNHLTPEPENRQRLYITLLTSLQIFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 VMMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALSLLYATTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILQYSEPLHLSTLADKFW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVILDPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQTVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+ S L G +++A YSL+++ Sbjct: 354 PLMATWWFISSLANLALPPLPNLMGELMIISSLLNWSWWTIALTGIGTLITAGYSLYMF 412 >gi|126215401|ref|YP_001054876.1| NADH dehydrogenase subunit 4 [Amphiprion ocellaris] gi|126143602|dbj|BAF47337.1| NADH dehydrogenase subunit 4 [Amphiprion ocellaris] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 199/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+ LT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLALTCWLLPLMILASQNHTSSEPTGRQRMYITLLTSLQIFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 VIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L AM ++ ++W W +F +K+P++ H WL AHV+AP AGS+ LA Sbjct: 176 SLLTLQYTPAMELSSYADKFW-WAGCLLAFLVKMPLYGAHLWLAKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R + L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMTMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMF 412 >gi|304322890|ref|YP_003856730.1| NADH dehydrogenase subunit 4 [Lepilemur hubbardorum] gi|110432695|gb|ABG73976.1| NADH dehydrogenase subunit 4 [Lepilemur ruficaudatus] gi|110432700|gb|ABG73980.1| NADH dehydrogenase subunit 4 [Lepilemur ruficaudatus] gi|110432705|gb|ABG73984.1| NADH dehydrogenase subunit 4 [Lepilemur ruficaudatus] gi|110432715|gb|ABG73992.1| NADH dehydrogenase subunit 4 [Lepilemur ruficaudatus] gi|294997834|gb|ADF57791.1| NADH dehydrogenase subunit 4 [Lepilemur hubbardorum] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/403 (32%), Positives = 207/403 (51%), Gaps = 33/403 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ L +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLAMWLFPLTIMASQYHLAKEPSERKKHFLFTLISLQLFLILTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWTQELANSWSSDLMWVACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITIILDPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + +GE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLVGELFITMATFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 L++ G RE + V+P+ +LT+ Sbjct: 408 LYMLTMTQRG-EPLYHAHNFNPSLTRENALMSMHVFPLLLLTL 449 >gi|10954199|gb|AAG25809.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] Length = 459 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWTLKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNSILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATTLMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|254674539|dbj|BAH86089.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] Length = 452 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 213/377 (56%), Gaps = 11/377 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ LV+L+ +L P +++S + + ++ R ++I ++L S ++ AFL+ D+LLF Sbjct: 58 DFMSVALVILSVWLLPLMLIASQQHMAKDTGLYQRIFIICQVILTSALVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F+ YT GS+ +L +V ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFYTMVGSLPLLICLVGQ-YKMMGSLSLD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L K + W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LILGGTYKGEYFTNLW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + ++ V+F L+L ++ + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGLMRISYA-WGASALLSGEVVFALALWGMVVMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI +G G GAM M++HGLVSS LF Y+R H+R++ G++ P V Sbjct: 295 VGGIMTGTTWGYNGAMILMIAHGLVSSCLFSLANYWYERSHSRNLLGSRGMIILFPLMGV 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + ++ N+ LP T GE + +++V+ S + G VL+A YSL+++ +G Sbjct: 355 GWFIASLMNLALPPTINLFGELVAMVAVYNWSMFSVIFMGVGAVLTAAYSLYMFGMSQWG 414 Query: 435 VSKCEKVQQLKDLSLRE 451 E + L ++ RE Sbjct: 415 -EVLENYKNLHVMTSRE 430 >gi|190349520|ref|YP_001974756.1| NADH dehydrogenase subunit 4 [Canthigaster coronata] gi|89885686|dbj|BAE86965.1| NADH dehydrogenase subunit 4 [Canthigaster coronata] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 205/365 (56%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F + +L D +S L+VL+ +L P IL+S N + I+ L L+ +I AF Sbjct: 52 FLNPYLATDSLSTPLLVLSCWLLPLMILASQNHTTHEPINRQRMYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 GATEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 ++ L + P ++ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NSNGTLSLLTLLHSNPSHLSTYADKLW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L+ L PL + P I L+L II + M QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRILVTLEPLTKELSYPFII-LALWGIIMTGSICMRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + ++AN+ LP +GE ++I S+F S +L G +++A Y Sbjct: 348 GLQMALPLMTTWWFLASLANLALPPLPNLMGELMIITSLFNWSWWTILLTGLGTLITASY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|12248160|ref|NP_073673.1| NADH dehydrogenase subunit 4 [Polymixia japonica] gi|12082062|dbj|BAB20742.1| NADH dehydrogenase subunit 4 [Polymixia japonica] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/358 (36%), Positives = 201/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P I++S I R Y++ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMIIASQNHISPEPISRQRTYIMLLTSLQLFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 TMFYIMFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNDAGTLS 176 Query: 194 IIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L M + + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MLTLPYTKPMYLLTYGDKIW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIMIMLDPLSKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMVLARGLQMILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGTGTLITAGYSLYMF 412 >gi|295293432|gb|ADF87983.1| NADH dehydrogenase subunit 4 [Pan troglodytes troglodytes] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 134/395 (33%), Positives = 220/395 (55%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + +I+ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTLGSLNIL- 177 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 356 AFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + ++ RE +++ PI +L++ Sbjct: 416 WG-SLTHHINSMQHSFTRENTLMFLHLSPILLLSL 449 >gi|28268815|gb|AAO37901.1|AF224573_4 NADH dehydrogenase subunit 4 [Hapalemur griseus griseus] Length = 458 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 201/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ +I F + +++ F Sbjct: 58 DSLSSPLVILTMWLLPLMIMASQHHLTKEPWTLKKLYLSMLISLQMFLIMTFTATELIYF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 118 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYI---QNYLGSLN 174 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L MS + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 175 LSTMSLCFQELPNSWSNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 234 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 235 LKLGGYGMMRITVILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 293 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 294 ALVIVAILIQTPWSFMGATVLMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 353 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE LVI++ F SN +L ++++ALYSL++ Sbjct: 354 MATWWLFASLTNLALPPSINLIGELLVIVAAFSWSNITIILMGLNMLITALYSLYMLTTT 413 Query: 432 VFG 434 G Sbjct: 414 QRG 416 >gi|225622227|ref|YP_002726515.1| NADH dehydrogenase subunit 4 [Eretmochelys imbricata] gi|99079656|gb|ABF66062.1| NADH dehydrogenase subunit 4 [Eretmochelys imbricata] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/392 (32%), Positives = 214/392 (54%), Gaps = 15/392 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWK--SIQENFREYMIAF--LVLESMVIGAF 129 F + +LGVD IS L++L+ +LTP IL+S + + R+ + F ++L+ ++ AF Sbjct: 52 FSNNYLGVDQISAPLLILSCWLTPLMILASQNHLTTEPTSRKRIFTFTIILLQISLMLAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE +LIP VII WG ER+ A F YT GS+ +L A++ + Sbjct: 112 STTELIMFFIAFETTLIPTLVIITRWGNQMERLSAGTYFLFYTLIGSLPLLIALLSL--- 168 Query: 189 KKTSSIIDLYAMS-KFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 K + + ++ M+ P W W A +F K+P++ H WLP AHV+AP AG Sbjct: 169 KTKNGSLSMHTMTLTQPTMRNSWTYTTWWFALLMAFMTKMPLYGLHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+G YG IR + + PL+ P + L+L +I S + + QTD+K LI Sbjct: 229 SMILAAVLLKLGKYGIIRVTMMMTPLSKTLSYPFMA-LALWGVIMTSSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 288 AYSSVSHMGLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 + +P ++ ++ ++ NM LP T +GE +I S+F SN +L +++A Y Sbjct: 348 NMQLLLPLMSLWWLLASLTNMALPPTINLMGELTIITSLFNWSNITILLTGLRTLITATY 407 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +L++ +G + ++ + RE ++ Sbjct: 408 TLYMLSTTQWGETP-SYIKTISPTHTREHLLM 438 >gi|165932517|ref|YP_001650784.1| NADH dehydrogenase subunit 4 [Aulorhynchus flavidus] gi|154758760|dbj|BAF74908.1| NADH dehydrogenase subunit 4 [Aulorhynchus flavidus] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 203/369 (55%), Gaps = 18/369 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P I++S R Y+ L+ +I AF + + Sbjct: 56 YLATDSLSTPLLVLTCWLLPLMIIASQNHTAMEPCNRQRLYITLLTSLQIFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 MIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLIALLLL--QNNTG 173 Query: 193 SI-------IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 S+ D ++ F + + W W + +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 SLSLLTIQYTDYLQLNTF--ADKLW-WASCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL ++ P I F +L ++ + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGLMRMLVMLDPLTTKLSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V IF GA+ M++HGL SSALF Y+R H+R + G Sbjct: 290 SSVSHMGLVVAAIFIQTPWSFSGALILMIAHGLASSALFCLANTNYERTHSRTLLLGRGF 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+GLP +GE ++I S+F S +L G +++ YSL Sbjct: 350 QMALPLMTTWWFIASLANLGLPPLPNLMGELMIITSLFNWSWWTLILTGAGTLITVSYSL 409 Query: 426 WLYRKVVFG 434 +++ G Sbjct: 410 YMFTMTQRG 418 >gi|322422794|ref|YP_004222582.1| NADH dehydrogenase subunit 4 [Clupeonella cultriventris] gi|317176547|dbj|BAJ54359.1| NADH dehydrogenase subunit 4 [Clupeonella cultriventris] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L+VLT +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YMAIDPLSAPLLVLTCWLLPLMILASQNHTRAEPVSRQRMYISLLASLQAFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 IIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLALQSSTGSL 175 Query: 193 SIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L A++ + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLNFGQALALVSWGDKVW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRMTSVLDPLTKEMAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 294 HMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTAYERTHSRTMVLARGLQMLF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE ++I ++F S L G +++A YSL+L+ Sbjct: 354 PLTATWWFIANLANLALPPLPNLMGEIMIITTMFNWSPWTLALTGTGTLITAGYSLYLF 412 >gi|218157255|ref|YP_002364412.1| NADH dehydrogenase subunit 4 [Pampus argenteus] gi|164370751|gb|ABY51658.1| NADH dehydrogenase subunit 4 [Pampus sp. LY-2009] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 205/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK---SIQENFREYMIAFLV-LESMVIGAFLS 131 + ++ D +S L++LT +L P IL+S S N + I LV L+ +I AF + Sbjct: 54 NLYMATDSLSTPLLILTCWLLPLMILASQNHTMSETPNRQRTFITLLVSLQIFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEILMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSMG 173 Query: 191 TSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSTPIQLNSYADKLW-WAGCLLAFLVKMPLYGMHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I L+L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFII-LALWGVVMTGSICLRQTDLKALIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S+ + G +++A YSL++ Sbjct: 352 ILPLMTAWWFITSLANLALPPFPNLMGELMIITSMFDWSHWTIAMTGLGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|110432520|gb|ABG73836.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432525|gb|ABG73840.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/402 (32%), Positives = 208/402 (51%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKEPWERKKHFLSVLISLQLFLIMTFTAAELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWTQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ + N+ +P + +GE L+ M+VF SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLAGLTNLAMPPSINLVGELLITMAVFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGEPPYHAHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|108793486|ref|YP_636967.1| NADH dehydrogenase subunit 4 [Aptocyclus ventricosus] gi|25006050|dbj|BAC23666.1| NADH dehydrogenase subunit 4 [Aptocyclus ventricosus] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/385 (33%), Positives = 207/385 (53%), Gaps = 11/385 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLTILASQNHTSHEPLNRQRAYITLLTSLQIFLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYVMFEATLIPTLILITRWGNQAERLNAGVYFLFYTLAGSLPLLIALLLLQNSAGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQYSNPTELTSYAHKLW-WAGCLLAFLVKMPLYGMHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMIVMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI + G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVVGGILTQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQMALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + ++AN+ LP +GE ++I ++ S +L G +++A YSL+++ Sbjct: 355 LMTAWWFITSLANLALPPLPNLMGELMIITALLNWSWWTIILTGTGTLITASYSLYMFLM 414 Query: 431 VVFGVSKCEKVQQLKDLSLRERCMV 455 G V L + RE ++ Sbjct: 415 TQRGPLPAHIVALLPSYT-REHLLM 438 >gi|95104583|gb|ABF51550.1| NADH dehydrogenase subunit 4 [Colobus guereza caudatus] gi|95104595|gb|ABF51559.1| NADH dehydrogenase subunit 4 [Colobus guereza caudatus] gi|177543299|gb|ACB73033.1| NADH dehydrogenase subunit 4 [Colobus guereza] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 141/447 (31%), Positives = 235/447 (52%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FEA+LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFEATLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRTMMLSRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHATIMLTGLNMLITALYSLYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E ++ PI +L+ + G+ P Sbjct: 433 ENMLMLMHLSPIILLSLNPNIIMGLTP 459 >gi|109689647|ref|YP_659560.1| NADH dehydrogenase subunit 4 [Trachyrincus murrayi] gi|109452359|dbj|BAE96393.1| NADH dehydrogenase subunit 4 [Trachyrincus murrayi] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 202/355 (56%), Gaps = 10/355 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VL+ +LTP +L+S + R Y+ + L+ +I AF +++ Sbjct: 56 YIATDPLSSPLLVLSCWLTPLMVLASQNHLSSEPLTRQRIYITLLISLQVFLILAFGAIE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG ER+ A F YT GS+ +L A++V+ T Sbjct: 116 MIMFYVMFEATLIPTLMLITRWGNQMERLNAGAYFLFYTLVGSLPLLVALLVLQNYTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ ++ S + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLIIHYTDPLLLSTSGSKIW-WAACLIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG R ++ L PL+ + P + L+L +I A V + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMARLMVVLDPLSKEMIYPFML-LALWGLIMAGSVCLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R ++R + GL + Sbjct: 294 HMGLVAGGILIQTPWGYTGALVLMIAHGLASSALFCLANTNYERTNSRTMILARGLQVIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 P A ++AN+ LP +GE ++I+S+F S +L G +++A YS Sbjct: 354 PLMATWWFAASLANLALPPLPNLMGELMIIISLFNWSPWTLILTGVGTLITAAYS 408 >gi|40805133|ref|NP_955675.1| NADH dehydrogenase subunit 4 [Jaculus jaculus] gi|40643293|emb|CAC95206.1| NADH dehydrogenase subunit 4 [Jaculus jaculus] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 135/394 (34%), Positives = 216/394 (54%), Gaps = 13/394 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF---REYMIAFLV-LESMVIGAFLSLDMLL 136 D +S L++LT++L P +++S + + ++ I+ LV L+ +I F + +++ Sbjct: 58 TDQLSTPLLILTSWLLPLMLIASQNHMSKETVVRKKLFISMLVTLQVSLIMTFSAAELMF 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++V + + +I+ Sbjct: 118 FYILFEATLIPTLIIITRWGNQTERLNAGVYFLFYTLVGSLPLLVALMVKRNQLGSLNIM 177 Query: 196 DLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 L S P MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK Sbjct: 178 LLMFNSPPLNPSLTNQLMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + L P + P I LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTIILNPTSIDMAYPFIL-LSLWGMVMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIAAIMIQTPWSFMGATALMMAHGLTSSLLFCLANTNYERIHSRTMLLARGLQSILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP + FIGE +I+S F SN +L ++++ALY+L++ Sbjct: 357 TWWLLASLTNLALPPSINFIGELYIIISSFSWSNFSIILTGINMLVTALYTLYMLIMTQR 416 Query: 434 GVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G S ++ L RE + + P+ +LT+ Sbjct: 417 G-SMSHHMKTLLPTFTRESTLMTLHLIPLILLTM 449 >gi|16357230|ref|NP_443511.1|ND4_15829 NADH dehydrogenase subunit 4 [Polymixia lowei] gi|16266984|dbj|BAB70140.1| NADH dehydrogenase subunit 4 [Polymixia lowei] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 201/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P I++S I R Y++ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMIIASQNHISPEPISRQRTYIMLLTSLQLFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 TMFYIMFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNDAGTLS 176 Query: 194 IIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L + + + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MLTLPYTKPLHLLTYGDKIW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIMIMLDPLSKEMAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMVLARGLQMILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGTGTLITAGYSLYMF 412 >gi|12044373|gb|AAG47830.1|AF312389_3 NADH dehydrogenase subunit 4 [Cottus carolinae] Length = 413 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NFYMATDSLSTPLLVLTCWLLPLMILASQNHTASEPLNRQRMYLTLLTSLQVFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TELIMFYVMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTIQYSDPIELTSYAHKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMVVMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFSGALILMIAHGLASSALFCLANTSYERTHSRTMLLARGLQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 VLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIILTGAGTLITASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|327492957|ref|YP_004347910.1| NADH dehydrogenase subunit 4 [Monotrete cochinchinensis] gi|327392458|dbj|BAK09895.1| NADH dehydrogenase subunit 4 [Monotrete cochinchinensis] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 208/367 (56%), Gaps = 18/367 (4%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSS-----WKSIQENFREYMIAFLVLESMVIGA 128 F + +L D +S L++L+ +L P IL+S ++ I R Y+ + L+ +I A Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTTYEPINRQ-RTYISLLISLQFFLILA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 111 FAATEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL-- 168 Query: 188 EKKTSSIIDLYAM------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + T+ + L + ++ + W W+ +F +K+P++ H WLP AHV+AP Sbjct: 169 -QNTNGSLSLLTLLHTTPLQPSTYADKIW-WVGCILAFLVKMPLYGVHLWLPKAHVEAPI 226 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA ++LK+GGYG +R L+ L PL + P I L+L II + + QTD+K Sbjct: 227 AGSMVLAAVLLKLGGYGMMRMLVALEPLTKELSYPFII-LALWGIIMTGSICLRQTDLKS 285 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 286 LIAYSSVSHMGLVVGGILIQTPWGFTGAVILMIAHGLTSSALFCLANTNYERTHSRTMLL 345 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GL +P + ++AN+ LP +GE ++I S+F S +L G +++A Sbjct: 346 ARGLQTALPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIILTGLGTLITA 405 Query: 422 LYSLWLY 428 YSL+++ Sbjct: 406 GYSLYMF 412 >gi|255961343|ref|YP_003097525.1| NADH dehydrogenase subunit 4 [Selaginella moellendorffii] gi|254941515|gb|ACT89030.1| NADH dehydrogenase subunit 4 [Selaginella moellendorffii] Length = 504 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 139/460 (30%), Positives = 230/460 (50%), Gaps = 28/460 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSF-QMIEYYHWIDYFCSYH--LGVDGISILLVVLTTF 94 LGI + F + +S F Q E Y WI+ +H LG+DG+++ L+ T F Sbjct: 40 LGIRSPEFPPITHTLCYHFESKSPFVQSREDYDWINIPPDFHWRLGIDGLTMGLIPPTGF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T + + + + R + + L + S +G+F S D+L ++ +E LIP ++ Sbjct: 100 VT-TSATPAARPVTRSPRSFYPSMLAMHSGQVGSFASQDILPPFLVWEPELIPAHSLLRS 158 Query: 155 WGGSERIYAAYKFFLYTFFG-SIFMLFAIVVMCWEKKTSSIID--LYAMSKFPFSIQYWM 211 WGG R YAA K YT G I +L + M +D + A P +++ Sbjct: 159 WGGKRRSYAATKSIPYTAAGGPISLLSGAITMGLYMPGEPALDFRVPADRSHPAALEMVS 218 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 +++F ++AIK P+ P H P+ H +A + + AG KMGGYG +R + P A Sbjct: 219 YLSFPIAYAIKPPILPSHARSPDTHGEAHYSTRMLPAGASSKMGGYGPLRINMESSPSAH 278 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 FAP + + I I+ A+ +S Q +K+ IA+ ++H G+V IGI + G EGA+ Sbjct: 279 SIFAPGLAVVGAIQIVCAASISPNQRSVKRRIAHPPVSHTGFVPIGIGPITEIGPEGAIL 338 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 QM+SHGL+ +AL G DR+ T + GG+ MP+ ++ +A++ LPG SG Sbjct: 339 QMISHGLIGAALSPIGGAGCDRMQTPFLGRMGGIAIPMPKIFILFSSLPIASLALPGMSG 398 Query: 392 FIGEFLVIMSVFQNSNT-------VAVLASFGVVLSALYSLWLYRKVVFGVSK-CEKVQQ 443 E +V + ++N V V A+ G++L+ ++ L + R++ +G S V + Sbjct: 399 SAAESMVSPGIAGSTNRSYDSKIIVLVTAAIGIILTPIHPLSMPRQMPYGYSGVTPAVPR 458 Query: 444 LKDLSLRE-----RCM-------VYPIAVLTV-FFGIYPV 470 + D RE R + +YP AVL++ GIYP+ Sbjct: 459 VMDYGPREIFIPIRPLLPVIGIGLYPNAVLSLCQSGIYPI 498 >gi|95104619|gb|ABF51577.1| NADH dehydrogenase subunit 4 [Colobus guereza] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 141/447 (31%), Positives = 235/447 (52%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FEA+LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFEATLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRTMMLSRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHVTIMLTGLNMLITALYSLYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E ++ PI +L+ + G+ P Sbjct: 433 ENMLMLMHLSPIILLSLNPNIIMGLTP 459 >gi|51980094|gb|AAU20747.1| NADH dehydrogenase subunit 4 [Riftia pachyptila] Length = 409 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 135/379 (35%), Positives = 206/379 (54%), Gaps = 8/379 (2%) Query: 68 YHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF---REYMIAFLVLESM 124 Y W S VD +S L++LT +++ I++S+K I+ N + ++I L L Sbjct: 2 YPWTTTMSSL-FSVDLMSSTLIILTLWISSLMIMASYK-IKHNHNMPKNFIIMCLSLSIS 59 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIV 183 +I F S ++ +FYIFFE SLIP+ ++I WG ER+ A+ +YT S+ ML I Sbjct: 60 LILTFSSSNLFMFYIFFETSLIPILILILTWGYQPERLQASMYLMMYTLTASLPMLVMIF 119 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 ++ + S + +S FP + W W +F +K+PMF H WLP AHV+AP AG Sbjct: 120 LIYSKNNHLSFLMSSWLSPFPNMMNIW-WFILILAFLVKMPMFSLHLWLPKAHVEAPVAG 178 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LAG++LK+G YG +R L +F ++ + +I L+L + SL+ + QTD+K LI Sbjct: 179 SMILAGVLLKLGTYGLMRMSL-IFTFMNKQSSSIITPLALWGAVVTSLICIRQTDLKALI 237 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI HMG + GI S + G +GAM M++HGL SSALF Y+ HTR IF Sbjct: 238 AYSSIGHMGILLAGILSSTEWGWQGAMAMMIAHGLSSSALFLLANTTYELTHTRSIFLTK 297 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G++ P + + T ANM P + + E L+I + + +A+ L+A Y Sbjct: 298 GMIIVFPTLTLWWFIATAANMAAPPSINLLSEILLITATLSQTTYLAIFLMLLSFLTAAY 357 Query: 424 SLWLYRKVVFGVSKCEKVQ 442 SL+L+ G + + Sbjct: 358 SLFLFASTQHGATTSTSIS 376 >gi|24817488|gb|AAN64808.1|AF224589_4 NADH dehydrogenase subunit 4 [Varecia rubra] gi|24817498|gb|AAN64816.1|AF224591_4 NADH dehydrogenase subunit 4 [Varecia rubra] gi|24817503|gb|AAN64820.1|AF224592_4 NADH dehydrogenase subunit 4 [Varecia rubra] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 207/359 (57%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P IL+S + +E++ + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSSPLMMLTMWLLPLMILASQHHLAKESWTLKKLYLSMLIFLQMLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 Y+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S ++ Sbjct: 119 YVLFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSMPLLVALI---YVQNYSGSLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L M+ + P S W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 LLMMNLCFQELPNS---WSNSLLWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL +++ A F L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITVILDPL-TKFMAYPFFMLCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H+R + G+ Sbjct: 292 SHMALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGVQAF 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMSTWWLLASLTNLALPPSINLIGELFVTMTSFSWSNITIILMGLNMLITALYSLYM 410 >gi|24817483|gb|AAN64804.1|AF224588_4 NADH dehydrogenase subunit 4 [Varecia rubra] gi|24817493|gb|AAN64812.1|AF224590_4 NADH dehydrogenase subunit 4 [Varecia rubra] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 207/359 (57%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P IL+S + +E++ + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSSPLMMLTMWLLPLMILASQHHLAKESWTLKKLYLSMLIFLQMLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 Y+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S ++ Sbjct: 119 YVLFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSMPLLVALI---YVQNYSGSLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L M+ + P S W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 LLMMNLCFQELPNS---WSNSLLWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL +++ A F L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITVILDPL-TKFMAYPFFMLCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H+R + G+ Sbjct: 292 SHMALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGVQAF 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMSTWWLLASLTNLALPPSINLIGELFVTMTSFSWSNITIILMGLNMLITALYSLYM 410 >gi|327492747|ref|YP_004347635.1| NADH dehydrogenase subunit 4 [Carinotetraodon lorteti] gi|327392360|dbj|BAK09804.1| NADH dehydrogenase subunit 4 [Carinotetraodon lorteti] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 206/369 (55%), Gaps = 10/369 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S L D +S L++L+ +L P IL+S + R Y+ L+ +I AF Sbjct: 52 FLSPWLATDPLSTPLLILSCWLLPLMILASQNHTTHDPVVRQRTYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 AATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLY--AMSKFP-FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L+ A S P ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 SGSLSLLTLFYPAPSNLPTYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILVVLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIALTGLGTLITAGYSL 409 Query: 426 WLYRKVVFG 434 +++ G Sbjct: 410 YMFLTTQRG 418 >gi|311788501|gb|ADQ12883.1| NADH dehydrogenase subunit 4 [Protosalanx chinensis] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/360 (34%), Positives = 197/360 (54%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VL+ +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLSCWLLPLMILASQNHMSSEPISRQRTYITLLASLQGCLIMAFAATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +L+FY+ FEA+LIP +II WG +ER+ A +T S+ +L A++ + E T Sbjct: 116 LLMFYVMFEATLIPTAIIITRWGNQAERLDAGTNLLFFTLISSLPLLVALLFLQNEAGTL 175 Query: 193 SIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+I L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLISLQFAE--PAHLCTWADKLWWAACITAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R +L L PL + P+I ++L I ++ + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGIMRMMLFLDPLPEELITPIIM-VALWGTIMTGVICLRQTDLKALIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGL SSALF + Y+R +R I G Sbjct: 293 GHMGLVISGILVQTAWGCTGAIALMIAHGLSSSALFCLANLTYERTQSRTILLTRGTQMT 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A+ + T++N+ LP +GE + ++F S ++ +++A YSL+L+ Sbjct: 353 LPLTAIWWFICTLSNLALPPLPNLMGELTITTALFDWSPWTIIILGLAGLITAAYSLYLF 412 >gi|157738583|ref|YP_001491405.1| NADH dehydrogenase subunit 4 [Ostracion immaculatus] gi|139000776|dbj|BAF51929.1| NADH dehydrogenase subunit 4 [Ostracion immaculatus] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 208/384 (54%), Gaps = 23/384 (5%) Query: 53 SVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---- 108 ++FD G SS + ++ D +S L+VLT +L P IL+S Sbjct: 44 NLFDTGWSSLNL-------------YMATDLLSTPLLVLTCWLLPLMILASQSHTTTEPI 90 Query: 109 ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKF 167 R Y++ L+ +I AF + ++++FY+ FEA+LIP ++I WG +ER+ A F Sbjct: 91 NRQRMYIMLLTSLQFFLILAFGATEIIMFYVMFEATLIPTLILITRWGNQTERLNAGTYF 150 Query: 168 FLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIP 224 YT GS+ +L A++++ T S++ L + ++ + W W +F +K+P Sbjct: 151 LFYTLAGSLPLLVALLLLQNSTGTLSLLTLQYSNPLQLCTYADKLW-WAGCMLAFLVKMP 209 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 ++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL + P I F +L Sbjct: 210 LYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMLTILEPLTKELSYPFIIF-ALW 268 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +I + + QTD+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Sbjct: 269 GVIMTGSICLRQTDLKSLIAYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALF 328 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 Y+R H+R + GL +P + ++AN+ LP +GE ++I S+F Sbjct: 329 CLANTNYERTHSRTMLLARGLQMALPLMTAWWFIASLANLALPPLPNLMGELMIITSLFN 388 Query: 405 NSNTVAVLASFGVVLSALYSLWLY 428 S L G +++A YSL+++ Sbjct: 389 WSWFTLALTGAGTLITAGYSLYMF 412 >gi|55139570|gb|AAV41411.1| NADH dehydrogenase subunit 4 [Paguma larvata] Length = 456 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 205/363 (56%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P + +S + + + Y+ ++L+ ++I F ++++++F Sbjct: 59 DPLSAPLLVLTTWLLPLMLTASQSHLSKETLARKKLYITMLVLLQLLLIMTFTAMELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ M + T ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYM---QNTLGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L M QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 LLIM-------QYWVKPISPTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL Q P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITMMLNPLTDQMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|280978527|ref|YP_003345446.1| NADH dehydrogenase subunit 4 [Myrichthys maculosus] gi|271280648|dbj|BAI53428.1| NADH dehydrogenase subunit 4 [Myrichthys maculosus] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 209/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S + R Y+ + L+ ++ AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMLPEPTNRQRSYITLLITLQILLTLAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + K Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLTL--HKDLG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTIQYTDPLTLSSWGDKLWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL + P I L+L II + + QTD+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMTMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 LPLMAAWWFISNLANLALPPLPNLMGEIMIITAMFNWSYWSIILTGMGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + ++ RE ++ Sbjct: 413 LMTQRGPTP-NHIVGMEPSHTREHLLI 438 >gi|296399278|gb|ADH10453.1| NADH-plastoquinone oxidoreductase subunit 4 [Selaginella moellendorffii] Length = 503 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 139/460 (30%), Positives = 230/460 (50%), Gaps = 28/460 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSF-QMIEYYHWIDYFCSYH--LGVDGISILLVVLTTF 94 LGI + F + +S F Q E Y WI+ +H LG+DG+++ L+ T F Sbjct: 40 LGIRSPEFPPITHTLCYHFESKSPFVQSREDYDWINIPPDFHWRLGIDGLTMGLIPPTGF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T + + + + R + + L + S +G+F S D+L ++ +E LIP ++ Sbjct: 100 VT-TSATPAARPVTRSPRSFYPSMLAMHSGQVGSFASQDILPPFLVWEPELIPAHSLLRS 158 Query: 155 WGGSERIYAAYKFFLYTFFG-SIFMLFAIVVMCWEKKTSSIID--LYAMSKFPFSIQYWM 211 WGG R YAA K YT G I +L + M +D + A P +++ Sbjct: 159 WGGKRRSYAATKSIPYTAAGGPISLLSGAITMGLYMPGEPALDFRVPADRSHPAALEMVS 218 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 +++F ++AIK P+ P H P+ H +A + + AG KMGGYG +R + P A Sbjct: 219 YLSFPIAYAIKPPILPSHARSPDTHGEAHYSTRMLPAGASSKMGGYGPLRINMESSPSAH 278 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 FAP + + I I+ A+ +S Q +K+ IA+ ++H G+V IGI + G EGA+ Sbjct: 279 SIFAPGLAVVGAIQIVCAASISPNQRSVKRRIAHPPVSHTGFVPIGIGPITEIGPEGAIL 338 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 QM+SHGL+ +AL G DR+ T + GG+ MP+ ++ +A++ LPG SG Sbjct: 339 QMISHGLIGAALSPIGGAGCDRMQTPFLGRMGGIAIPMPKIFILFSSLPIASLALPGMSG 398 Query: 392 FIGEFLVIMSVFQNSNT-------VAVLASFGVVLSALYSLWLYRKVVFGVSK-CEKVQQ 443 E +V + ++N V V A+ G++L+ ++ L + R++ +G S V + Sbjct: 399 SAAESMVSPGIAGSTNRSYDSKIIVLVTAAIGIILTPIHPLSMPRQMPYGYSGVTPAVPR 458 Query: 444 LKDLSLRE-----RCM-------VYPIAVLTV-FFGIYPV 470 + D RE R + +YP AVL++ GIYP+ Sbjct: 459 VMDYGPREIFIPIRPLLPVIGIGLYPNAVLSLCQSGIYPI 498 >gi|269994343|dbj|BAI50333.1| NADH dehydrogenase subunit 4 [Xenodermichthys copei] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/360 (36%), Positives = 198/360 (55%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y++ + L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHVSPEPISRQRMYLLLLVTLQVSLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+I L P S+ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMITL--QYSQPLSLASWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL + P I L+L ++ + + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMVGMLDPLTKEMAYPFIV-LALWGVVMTTSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAAGILIQTPWSFSGAIILMIAHGLTSSALFCLANTSYERTHSRTMILARGLQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A +AN+ LP +GE ++I ++F S L G +L+A Y+L+L+ Sbjct: 353 FPLAAAWWFFTGLANLALPPLPSLMGEIMIITTLFNWSPWTIALTGLGTLLTACYTLYLF 412 >gi|240266552|ref|YP_002970924.1| NADH dehydrogenase subunit 4 [Leiocephalus personatus] gi|239735226|dbj|BAH70443.1| NADH dehydrogenase subunit 4 [Leiocephalus personatus] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 198/361 (54%), Gaps = 12/361 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAF 129 + + L +D IS LVVL+ +L P L+S + QE R +++ L++ ++ F Sbjct: 52 YATSSLAIDHISAPLVVLSCWLLPLMALASQNHMAQEPLHRKRVFLMNLATLQTFLMLTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++ +FYI FEA+LIP +II WG +ER+ A F YT S+ +L +I+ + + Sbjct: 112 SATNLTMFYIMFEATLIPTLIIITRWGNQAERLTAGIYFLFYTLASSLPLLISILYIDLK 171 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 SS+ L +++ P W +W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 MGYSSM-PLLQLTQ-PTMTYSWSNIFLWTACLMAFMVKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LKMGGYG +R L L PL + + P + ++L II S + + QTD+K LIA Sbjct: 230 MVLAAILLKMGGYGIMRMLTILSPLTTNLYYPFMI-MALWGIIMTSAICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GAM M++HGL SS LF Y+R H+R + G Sbjct: 289 YSSVSHMGLVIAACLIQTPWSFSGAMILMIAHGLTSSMLFCLANTNYERTHSRTMILARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P ++ + NM LP + +GE ++I S+ S +L G +++A YS Sbjct: 349 MQLILPLMTTWWLLANLTNMALPPSINLMGELMIISSLMNWSLPTIILTGLGTLITATYS 408 Query: 425 L 425 L Sbjct: 409 L 409 >gi|18913052|gb|AAL79371.1| NADH dehydrogenase subunit 4 [Dugong dugon] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/396 (33%), Positives = 212/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWK--SIQENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S S + N R+ Y+ ++L+ +I F + +++L Sbjct: 59 DHLSTPLLILTTWLLPLMLMASQHHLSQESNTRKKSYITMLILLQLFLIMTFAATELILL 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP VII WG ER+ A F YT GSI +L +V + + T ++ Sbjct: 119 YIMFEATLIPTMVIITRWGNQPERLNAGLYFLFYTLLGSIPLLITLVSI---QNTLGTLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L ++ + W +W+ +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LLMAPEWTQHLPDSWSMNLLWLTCMMAFMVKMPLYGIHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITILLDPLTKSMAYPFLM-LSLWGMVMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSLLFCLANSNYERVHSRTMILARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ + N+ LP T IGE +I++ F SN + F ++L+A Y+L++ Sbjct: 355 MAAWWLLACLTNLALPPTINLIGELFIILASFSWSNYTILFMGFNMLLTASYTLYMLITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + +K RE + + P+ +L++ Sbjct: 415 QRG-KASHHAKAMKPSFTRENALMALHIIPLLLLSI 449 >gi|2290428|gb|AAD04685.1| NADH dehydrogenase subunit 4 [Trachypithecus francoisi] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 134/400 (33%), Positives = 216/400 (54%), Gaps = 15/400 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLS 131 S +L +D +S L+ +T +L P I++S + EN + Y+ + L+ +I F+S Sbjct: 53 STYLSLDPLSTALLTMTAWLLPLMIMASQYHLHNENLSRKKLYLSMMIFLQISLIMTFMS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L +++ + Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLAGSLPLLI-MLMFTYNNM 171 Query: 191 TSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S I L ++ + + W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLNIMLLTLTAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L PL ++Y A LSL +I S + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMRLTSILNPL-TEYMAYPFLMLSLWGMIMTSSTCLRQTDLKALIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVITASLIQTPWSFTGAIILMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A V + N+ LP T IGE LV+ ++F S+ +L ++++ALYSL++ Sbjct: 351 LLPLMASWWFVANLTNLALPPTINLIGELLVMATLFSWSHVTIMLTGLNMLITALYSLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + +K RE +++ PI +L++ Sbjct: 411 FITTQRG-TLTSHIMNMKPSFTRENMLMFMHISPIILLSL 449 >gi|283767187|ref|YP_003377656.1| NADH dehydrogenase subunit 4 [Scomber japonicus] gi|283767215|ref|YP_003377682.1| NADH dehydrogenase subunit 4 [Scomber australasicus] gi|283362068|dbj|BAI65875.1| NADH dehydrogenase subunit 4 [Scomber japonicus] gi|283362096|dbj|BAI65901.1| NADH dehydrogenase subunit 4 [Scomber australasicus] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 200/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDLLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQIFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + S + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSAPLQLSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSYWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|110432710|gb|ABG73988.1| NADH dehydrogenase subunit 4 [Lepilemur ruficaudatus] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 141/452 (31%), Positives = 225/452 (49%), Gaps = 47/452 (10%) Query: 33 FFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLT 92 + V L TI+F SL + + D ++F W +F D +S L+ L Sbjct: 24 WINVTLHSLTISFT-SLSLLNQTDNNSNNF-------WSTFFS------DPLSSPLLTLA 69 Query: 93 TFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPM 148 +L P I++S K E + ++ + L+ +I F + ++++FYI FEA+LIP Sbjct: 70 MWLFPLTIMASQYHLAKEPSERKKHFLFTLISLQLFLILTFTATELIMFYILFEATLIPT 129 Query: 149 FVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI 207 +II WG +ER+ A F YT GS+ +L A+ S I Y + F + Sbjct: 130 LIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQNYMGTLNLFMM 179 Query: 208 QYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 YW MW+A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK+G Sbjct: 180 TYWTQELANSWSSDLMWVACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLG 239 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 GYG +R + L PL +++ A + L ++ SL+ + QTD+K LIAYSS++HM V Sbjct: 240 GYGMMRITIILDPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVI 298 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 + I GA M++HGL SS LF Y+R+H+R + GL +P + Sbjct: 299 VAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQSLLPLMSTW 358 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 ++ ++ N+ LP + +GE + M+ F SN +L ++++A YSL++ G Sbjct: 359 WLLASLTNLALPPSINLVGELFITMATFSWSNMTIILTGLNMLITATYSLYMLTMTQRG- 417 Query: 436 SKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 RE + V+P+ +LT+ Sbjct: 418 EPLYHAHNFNPSLTRENALMSMHVFPLLLLTL 449 >gi|209447628|gb|ACI47101.1| NADH dehydrogenase subunit 4 [Phaner furcifer pallescens] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 213/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P I++S + + + Y+ L+ +++ F + + +LF Sbjct: 59 DQLSSPLLVLTVWLLPLMIVASQHHLNKESWTRKKLYLSMLTSLQVILVMTFSASETILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE +LIP +II WG +ER+ A F YT FGS+ +L A+V M +K+ ++ Sbjct: 119 YILFETTLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALVYM---QKSMGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 M+ + SI + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLMMTLWFQELSISWSNNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL + Y A L + +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMTLNPL-TNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSYVGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + IGE V M+ SN +L ++++ALYSL++ Sbjct: 355 MSTWWLLASLTNLALPPSINLIGELFVTMATLSWSNVTIILIGLNILITALYSLYMLTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G S + L RE + + P+A LT+ Sbjct: 415 QRGKSSYH-IHTLSPSLTRENALMSMHMLPLACLTL 449 >gi|295293446|gb|ADF87996.1| NADH dehydrogenase subunit 4 [Pan troglodytes troglodytes] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 135/395 (34%), Positives = 219/395 (55%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQHHLSNEPLSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + +I+ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTLGSLNIL- 177 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 356 AFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + +K RE +++ PI +L++ Sbjct: 416 WG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|37620614|gb|AAQ95116.1| NADH dehydrogenase subunit 4 [Monachus monachus] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/347 (34%), Positives = 191/347 (55%), Gaps = 9/347 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFTATELIMFYILFEATLVPTLIIITRWGNQTERLNAGMYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSI----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMF 226 T GS+ +L A++ + + T ++ + L+ +W+A +F +K+P++ Sbjct: 153 TLVGSLPLLVALLSI--QNNTGTLNFLMLQLWTQPMLNSWSNILLWLACMMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S P + LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMLLNPLTSSMAYPFMA-LSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R+H+R + GL +P A ++ ++ N+ LP T IGE V+M+ F S Sbjct: 330 ANSNYERIHSRTMILARGLQILLPLMAAWWLMASLTNLALPPTINLIGELFVVMASFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 NT +L ++++ALYSL++ G ++ +K RE Sbjct: 390 NTTIILMGTNIIITALYSLYMLITTQRG-KYTHHIKNIKPTFTRENA 435 >gi|302824505|ref|XP_002993895.1| hypothetical protein SELMODRAFT_137786 [Selaginella moellendorffii] gi|300138262|gb|EFJ05036.1| hypothetical protein SELMODRAFT_137786 [Selaginella moellendorffii] Length = 524 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 139/460 (30%), Positives = 230/460 (50%), Gaps = 28/460 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSF-QMIEYYHWIDYFCSYH--LGVDGISILLVVLTTF 94 LGI + F + +S F Q E Y WI+ +H LG+DG+++ L+ T F Sbjct: 40 LGIRSPEFPPITHTLCYHFESKSPFVQSREDYDWINIPPDFHWRLGIDGLTMGLIPPTGF 99 Query: 95 LTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGV 154 +T + + + + R + + L + S +G+F S D+L ++ +E LIP ++ Sbjct: 100 VT-TSATPAARPVTRSPRSFYPSMLAMHSGQVGSFASQDILPPFLVWEPELIPAHSLLRS 158 Query: 155 WGGSERIYAAYKFFLYTFFG-SIFMLFAIVVMCWEKKTSSIID--LYAMSKFPFSIQYWM 211 WGG R YAA K YT G I +L + M +D + A P +++ Sbjct: 159 WGGKRRSYAATKSIPYTAAGGPISLLSGAITMGLYMPGEPALDFRVPADRSHPAALEMVS 218 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 +++F ++AIK P+ P H P+ H +A + + AG KMGGYG +R + P A Sbjct: 219 YLSFPIAYAIKPPILPSHARSPDTHGEAHYSTRMLPAGASSKMGGYGPLRINMESSPSAH 278 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 FAP + + I I+ A+ +S Q +K+ IA+ ++H G+V IGI + G EGA+ Sbjct: 279 SIFAPGLAVVGAIQIVCAASISPNQRSVKRRIAHPPVSHTGFVPIGIGPITEIGPEGAIL 338 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 QM+SHGL+ +AL G DR+ T + GG+ MP+ ++ +A++ LPG SG Sbjct: 339 QMISHGLIGAALSPIGGAGCDRMQTPFLGRMGGIAIPMPKIFILFSSLPIASLALPGMSG 398 Query: 392 FIGEFLVIMSVFQNSNT-------VAVLASFGVVLSALYSLWLYRKVVFGVSK-CEKVQQ 443 E +V + ++N V V A+ G++L+ ++ L + R++ +G S V + Sbjct: 399 SAAESMVSPGIAGSTNRSYDSKIIVLVTAAIGIILTPIHPLSMPRQMPYGYSGVTPAVPR 458 Query: 444 LKDLSLRE-----RCM-------VYPIAVLTV-FFGIYPV 470 + D RE R + +YP AVL++ GIYP+ Sbjct: 459 VMDYGPREIFIPIRPLLPVIGIGLYPNAVLSLCQSGIYPI 498 >gi|74310582|ref|YP_313703.1| NADH dehydrogenase subunit 4 [Python regius] gi|73760210|dbj|BAE20010.1| NADH dehydrogenase subunit 4 [Python regius] Length = 451 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/369 (33%), Positives = 200/369 (54%), Gaps = 7/369 (1%) Query: 65 IEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLV 120 ++ ++ + +L +D IS L+ L+ +L P +++S ++ + R +M + Sbjct: 42 LKQNQYLKPLSNLYLNLDQISAPLLTLSFWLLPLMMIASQHAMMSEPMQRQRTFMATTVF 101 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFML 179 L+ + F + ++ L YI FEA+L+P +II WG +ER+ A F +YT S+ +L Sbjct: 102 LQITIALTFTASNLTLMYIMFEATLVPTLIIITRWGQQAERLTAGTYFMMYTLTTSMPLL 161 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 AI+ + T ++ L + P + ++W+A +F K+P++ H WLP AHV+A Sbjct: 162 IAILFLNNTSNTPTLFCLTIKTNNP-CMDLFLWLACLTAFLAKMPLYGLHLWLPKAHVEA 220 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P AGS+ LA I+LK+GGYG IR + L + F P I +SL I A+L + QTD+ Sbjct: 221 PIAGSMVLAAILLKLGGYGIIRMMQILPTTKTDMFMPFIV-ISLWGAILANLTCLQQTDL 279 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 K LIAYSSI+HMG V I + G+ GAM M++HG SS LF + Y+R HTR + Sbjct: 280 KSLIAYSSISHMGLVIAAIMTQTPWGLAGAMTLMVAHGFTSSMLFCLANITYERTHTRIL 339 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 G + +P + + N+ P + F GE L+I ++F +L +++ Sbjct: 340 MLTRGFHNILPMMTAWWLSANLMNIATPPSMNFTGELLIISTMFNWCPPTIILLGLSMLI 399 Query: 420 SALYSLWLY 428 +A YSL +Y Sbjct: 400 TATYSLHMY 408 >gi|295641155|gb|ADG22699.1| NADH dehydrogenase subunit 4 [Martes zibellina] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/389 (32%), Positives = 208/389 (53%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L++LTT+L P +++S + + + Y+ + L+ ++I F + ++++ Sbjct: 58 TDSLSAPLLMLTTWLLPLMLMASQHHLSKETLTRKKLYITMLVTLQLLLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + + Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLWL---QNNLGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +L IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NLLV-------IQYWTQPLLSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL + + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITILLNPL-TDFMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+M+ F SN +L + ++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIILMGINITITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G ++ +K RE Sbjct: 407 SLYMLITTQRG-KYTHHIKNIKPSFTREN 434 >gi|10954234|gb|AAG25837.1| NADH dehydrogenase subunit 4 [Eulemur fulvus collaris] gi|156072963|gb|ABU45797.1| NADH dehydrogenase subunit 4 [Eulemur fulvus collaris] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/356 (34%), Positives = 200/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKEPWTLKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNTLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|167781881|ref|YP_001686720.2| NADH dehydrogenase subunit 4 [Canis lupus chanco] Length = 458 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V++S F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVVSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKXIKPSFTRENA 435 >gi|95104575|gb|ABF51544.1| NADH dehydrogenase subunit 4 [Colobus guereza] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 140/447 (31%), Positives = 235/447 (52%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FE +LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFETTLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTTQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRTMMLSRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHVTIMLTGLNMLITALYSLYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E +++ PI +L+ + G+ P Sbjct: 433 ENMLMFMHLSPIILLSLNPNIIMGLTP 459 >gi|10954239|gb|AAG25841.1| NADH dehydrogenase subunit 4 [Eulemur fulvus collaris] gi|156072958|gb|ABU45793.1| NADH dehydrogenase subunit 4 [Eulemur fulvus collaris] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/356 (34%), Positives = 200/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKEPWTLKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNTLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|25057357|ref|NP_739811.1| NADH dehydrogenase subunit 4 [Hypoatherina tsurugae] gi|25005729|dbj|BAC23381.1| NADH dehydrogenase subunit 4 [Hypoatherina tsurugae] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 204/363 (56%), Gaps = 14/363 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S EN + I+ L L+ +I AF + Sbjct: 54 SSYMATDPLSTPLLVLTCWLLPLMILASQNHTSAEPENRQRMYISLLTSLQIFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNT 171 Query: 191 TSSIIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T ++ L P + ++W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQYTTPLQLSTSADKFW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG IR + L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMIRMMTLLEPLTKELSYPFIV-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMVLPLMTTWWFLASLANLALPPLPNLMGELMIISSLFNWSWWTLALTGLGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|256427191|ref|YP_003126962.1| NADH dehydrogenase subunit 4 [Labracoglossa argentiventris] gi|256353343|dbj|BAH97853.1| NADH dehydrogenase subunit 4 [Labracoglossa argentiventris] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 203/365 (55%), Gaps = 10/365 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ + L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTALEPVNRQRMYITLLISLQAFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSNPLLLTTYADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLEPLTEELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + ++AN+ LP +GE ++I S+ S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLLNWSWWTILLTGPGTLIAAGYSLYMFL 413 Query: 430 KVVFG 434 G Sbjct: 414 ATQRG 418 >gi|254674651|dbj|BAH86193.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] Length = 452 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 213/377 (56%), Gaps = 11/377 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ LV+L+ +L P +++S + + ++ R ++I ++L S ++ AFL+ D+LLF Sbjct: 58 DFMSVALVILSVWLLPLMLIASQQHMAKDTGLYQRIFIICQVILTSALVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F+ YT GS+ +L +V ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFYTMVGSLPLLICLVGQ-YKMVGSLSLD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L M K + W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LILGGMYKGEYFTNLW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + ++ V+F L+L ++ + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGLMRISYA-WGASALLSGEVMFALALWGMVVMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI +G G GAM M++HGLVSS LF Y+R H+R++ G++ P Sbjct: 295 VGGIMTGTTWGYNGAMILMIAHGLVSSCLFSLANYWYERSHSRNLLGSRGMIILFPLMGA 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + ++ N+ LP T GE + +++V+ S + G VL+A YSL+++ +G Sbjct: 355 GWFIASLMNLALPPTINLFGELVAMVAVYNWSMFSVIFMGVGAVLTAAYSLYMFGMSQWG 414 Query: 435 VSKCEKVQQLKDLSLRE 451 E + L ++ RE Sbjct: 415 -EVLENYKNLHVMTSRE 430 >gi|25057875|ref|NP_740097.1| NADH dehydrogenase subunit 4 [Pterocaesio tile] gi|25006106|dbj|BAC23718.1| NADH dehydrogenase subunit 4 [Pterocaesio tile] Length = 460 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + QE R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTAQEPINRQRMYITLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQFSNPLQLTTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P + L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVVLEPLTKELSYPFLI-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLILTGAGTLITAGYSLYMF 412 >gi|177543284|gb|ACB73021.1| NADH dehydrogenase subunit 4 [Colobus angolensis] Length = 459 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/410 (32%), Positives = 217/410 (52%), Gaps = 17/410 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFL 130 CS HL D ++ L++LT +L P ++S + + Y+ + L+ +I F+ Sbjct: 52 CSTHLSSDPLTTPLLMLTAWLLPLMTMASQYHLHNESPSRKKLYLSMMIFLQVSLIMTFM 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L ++ + + Sbjct: 112 ATELILFYILFETTLIPTLIIITRWGIQAERLNAGTYFLFYTLTGSLPLLIMLLYIYNDL 171 Query: 190 KTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + +I+ L ++ S +W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLNIMLLTLTAQKLTSTWSHNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L P+ ++Y A LSL +I S + + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMR-LTPILDPLTEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVIVASLIQTPWSFTGAIILMIAHGLTSSMLFCLANSNYERTHSRIMMLSRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + + N+ LP T +GE LV+ + F S+ +L ++++ALYSL + Sbjct: 351 LLPLMAFWWFMANLTNLALPPTINLMGELLVVTTSFSWSHITIMLTGLNMLITALYSLHM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVL----TVFFGIYP 469 Y G + +K RE +++ PI +L ++ G+ P Sbjct: 411 YITTQRG-PLTHHITNIKPSFTRENLLMFMHLSPIILLSLNPSIIMGLTP 459 >gi|95104603|gb|ABF51565.1| NADH dehydrogenase subunit 4 [Colobus guereza kikuyuensis] Length = 459 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 141/447 (31%), Positives = 235/447 (52%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FEA+LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFEATLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIILLYTYNDLGSLNIMFLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRTMMLSRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHVTIMLTGLNMLITALYSLYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E ++ PI +L+ + G+ P Sbjct: 433 ENMLMLMHLSPIILLSLNPNIIMGLTP 459 >gi|215399150|ref|YP_002332280.1| NADH dehydrogenase subunit 4 [Podarcis muralis] gi|62900867|gb|AAY18756.1| NADH dehydrogenase subunit 4 [Podarcis muralis] gi|213983298|gb|ACJ54981.1| NADH dehydrogenase subunit 4 [Podarcis muralis] Length = 460 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 205/387 (52%), Gaps = 23/387 (5%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDML 135 +D S L++L+ +L P IL+S ++ R +++ L++ +I F + +++ Sbjct: 58 NIDTTSAPLIILSCWLLPLMILASQNHLKTEPMNRKRTFLMILTTLQTTLIMTFAASEVI 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK---T 191 LFYI FE +LIP +II WG +ER+ A F YT S+ +L IV++ + K T Sbjct: 118 LFYILFETTLIPTLIIITRWGNQAERMNAGLYFLFYTLASSLPLL--IVLLYFNNKYFHT 175 Query: 192 S------SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 S + +L + P +W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 176 SMELLFMTQPELLSTDSSPM-----LWLACLLAFLVKLPLYGLHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA I+LK+GGYG IR L P P I L+L I+ S + + QTD+K LIAY Sbjct: 231 VLAAILLKLGGYGLIRISPVLNPHPQNLMFP-ILILALWGILMTSSICLRQTDLKALIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG VT I G+ GAM M++HGL SSALF Y+R HTR + GL Sbjct: 290 SSVSHMGLVTAAIIVQTPWGLTGAMILMIAHGLTSSALFALANTNYERTHTRTLLLVRGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P + ++ + NM +P T +GE +I ++F S ++ G +++A YSL Sbjct: 350 QLAFPLMSTWWLLINLTNMAMPPTINLLGELFIISTLFNWSTPTIIITGIGTLITATYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRER 452 +++ G S + + L RE Sbjct: 410 YMFLMTQRG-SISTQFRLLPPTHTREH 435 >gi|294774427|dbj|BAJ05705.1| NADH dehydrogenase subunit 4 [Canis lupus] Length = 459 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAY S++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYFSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + +F GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVFIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSYHIKNIKPSFTRENA 435 >gi|160688883|gb|ABX45293.1| NADH dehydrogenase subunit 4 [Rattus exulans] Length = 459 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 139/393 (35%), Positives = 213/393 (54%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMMLASQNHMKKENSMHQKLYISMLISLQILLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP VII WG +ER+ A F YT GSI +L A++ + T + I Sbjct: 119 YILFEATLIPTLVIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + L P +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LSLTTQHLPPTWSNNILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRISMILDPLTKSLAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I GA M++HGL SS LF Y+R+H+R + GL P A Sbjct: 298 ITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP +GE ++MS F SN +L + +V++ +YS+++ G Sbjct: 358 WWLLASLANLALPPLINLMGELFIVMSTFSWSNPSIILMATNIVITGMYSMYMIITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + L+ RE + V P+ +LT+ Sbjct: 418 -KLTSHMNNLQPSHTRELTLMALHVIPLMLLTI 449 >gi|88061925|gb|ABD38938.1| NADH dehydrogenase subunit 4 [Micropogonias undulatus] Length = 460 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 199/363 (54%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLVLTCWLLPLMILASQNHTASEPINRQRMYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L S + + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQFSSPVQLTTSADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILPMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|88683182|emb|CAI38780.1| NADH dehydrogenase subunit 4 [Ascaphus truei] Length = 457 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 133/393 (33%), Positives = 220/393 (55%), Gaps = 14/393 (3%) Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIG 127 + F +Y+L VD +S L++LT +L P +L+S + + FR+ Y+ A + L+ +I Sbjct: 49 NLFMNYYLSVDRLSSPLLILTCWLLPLMVLASQNHLTSEPPFRQRIYLSALITLQISLIM 108 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 AF + ++++FYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 109 AFGATELIMFYIMFETTLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLMLQ 168 Query: 187 WEKKTSSIIDLYAMSKFPF----SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 S + L +S PF + + W W A +F +K+P++ H WLP AHV+AP A Sbjct: 169 -NSLGSLSLPLLQLSSTPFMTLLAHKIW-WAACLLAFLVKMPLYGAHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA I+LK+GGYG +R L P+ + + +I L+L II S + M QTD+K + Sbjct: 227 GSMVLAAILLKLGGYGIMRISTMLTPMTNLAYPFII--LALWGIIMTSSICMRQTDLKAM 284 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V GA+ M++HGL+SSALF Y+R H+R + Sbjct: 285 IAYSSVSHMGLVIAAALIQTPWSFTGAIILMIAHGLISSALFCLANTNYERTHSRALILA 344 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 G+ +P ++ +ANM LP +GE +++++F SN ++ G +++A Sbjct: 345 RGMQMILPLMGTWWLLANLANMALPPAPNLMGELTIMVALFNWSNLTIIITGVGTLITAS 404 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 YSL+++ G + + ++ RE M+ Sbjct: 405 YSLYMFLMTQRGSTPPHFI-SIQPTHTREHIMI 436 >gi|295641197|gb|ADG22738.1| NADH dehydrogenase subunit 4 [Martes flavigula] Length = 459 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 120/361 (33%), Positives = 191/361 (52%), Gaps = 25/361 (6%) Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYA 163 K + Y+ + L+ ++I F + ++++FYI FEA+L+P +II WG +ER+ A Sbjct: 86 KETLTRKKLYITMLVTLQLLLIMTFTATELIMFYILFEATLMPTLIIITRWGNQTERLNA 145 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW------------M 211 F YT GS+ +L A++ W + ++L +QYW + Sbjct: 146 GLYFLFYTLVGSLPLLTALL---WMQNNLGTLNL-------LVLQYWAQPLSSSWSNTLL 195 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S Sbjct: 196 WLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLNPLTS 255 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 P + LSL +I S + + QTD+K LIAYSS++HM V + + GA Sbjct: 256 SMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAVLIQSPWSYMGATA 314 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 M++HGL SS LF Y+R+H+R + GL +P A ++ ++ N+ LP T Sbjct: 315 LMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQMLLPLMAAWWLLASLTNLALPPTIN 374 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 +GE V+M+ F SN +L + ++ALYSL++ G ++ +K RE Sbjct: 375 LVGELFVVMASFSWSNITIILMGINITITALYSLYMLITTQRG-KYTHHIKNIKPSFTRE 433 Query: 452 R 452 Sbjct: 434 N 434 >gi|25057738|ref|NP_739967.1| NADH dehydrogenase subunit 4 [Allocyttus niger] gi|25005939|dbj|BAC23563.1| NADH dehydrogenase subunit 4 [Allocyttus niger] Length = 460 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 133/360 (36%), Positives = 201/360 (55%), Gaps = 14/360 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI-QENFREYMIAFLVLESM---VIGAFLSLDM 134 +G D +S L++LT +L P IL+S + QE + +L S+ +I AF + ++ Sbjct: 57 MGTDPLSTPLLILTCWLLPLMILASQHHMAQEPLSRQRVYITLLSSLQFFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A++ + T S Sbjct: 117 LMFYVMFEATLIPTLIIITRWGNQKERLNAGTYFLFYTLAGSLPLLVALLFLQNSTGTLS 176 Query: 194 II-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ DL M+ + + W W +F +K+P+ H WLP AHV+AP AGS+ LA Sbjct: 177 MLTTQYNDLSLMTSWGHKL--W-WAVCMIAFLVKMPLPGVHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRIMVTLNPLSKEMIFPFII-LALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 MP ++AN+ LP +GE ++I S+F S L G +++A YSL+L+ Sbjct: 353 MPLMTTWWFTASLANLALPPLPNLMGEIMIISSLFNWSWFTIALTGTGTLITAGYSLYLF 412 >gi|161760620|ref|YP_001595483.1| NADH dehydrogenase subunit 4 [Acanthurus lineatus] gi|160426387|gb|ABX40037.1| NADH dehydrogenase subunit 4 [Acanthurus lineatus] Length = 460 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 207/370 (55%), Gaps = 24/370 (6%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 + + ++ D +S L+VLT +L P IL+S + R ++ + L+ +I AF Sbjct: 52 YLNPYMATDPLSTPLLVLTCWLLPLMILASQNHMASEPPARQRTFITLMISLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + E Sbjct: 112 SATELMMFYIMFEATLIPTLILITRWGSQTERLNAGTYFLFYTLAGSLPLLVALLAL--E 169 Query: 189 K----------KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 K + ++ I L + +S + W W A F +K+P++ H WLP AHV+ Sbjct: 170 KTTGTLSLLTLQYTNYIHLAS-----YSDKLW-WAACLLGFLVKMPLYGVHIWLPKAHVE 223 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP AGS+ LA ++LK+GGYG +R L+ L PL + P I L+L II + + QTD Sbjct: 224 APVAGSMILAAVLLKLGGYGMMRILIVLEPLTKELSYPFIA-LALWGIIMTGSICLRQTD 282 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R Sbjct: 283 LKSLIAYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRT 342 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GL +P A + ++AN+ LP +GE ++I S+F S +L G + Sbjct: 343 MVLARGLQMALPLMATWWFLGSLANLALPPLPNLMGELMIITSLFNWSWWTLILTGIGTL 402 Query: 419 LSALYSLWLY 428 ++A YSL+++ Sbjct: 403 ITAGYSLYMF 412 >gi|53686568|ref|YP_097007.1| NADH dehydrogenase subunit 4 [Stereochilus marginatus] gi|51979753|gb|AAU20431.1| NADH dehydrogenase subunit 4 [Stereochilus marginatus] Length = 458 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/362 (34%), Positives = 202/362 (55%), Gaps = 17/362 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE----YMIAFLVLESMVIGAFL 130 + +LGVD IS L+VLT +L P IL+S ++ N + Y+ L+ +I AF Sbjct: 52 TNKYLGVDKISSPLLVLTCWLLPLMILASQNHLKTNPKNRQQMYISMLATLQVALIMAFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 112 ATELILFYITFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLFLLSSL 171 Query: 190 KTSSII------DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + S+ +++ M+ +W+ +F +K+P++ H WLP AHV+AP AG Sbjct: 172 NSLSVNLLITSQEMFLMNP----TNKLLWLGCLTAFMVKMPLYGAHLWLPKAHVEAPVAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG IR + PL + +I L+L ++ L+ QTD+K LI Sbjct: 228 SMILAAVLLKLGGYGIIRITMLFTPLIELSYPFII--LALWGVLMTGLICTRQTDLKSLI 285 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V + GA+ M+SHGL+SSALF Y+R H+R + Sbjct: 286 AYSSVSHMGLVVAAALIQTPWSLTGAVILMISHGLISSALFCLANTNYERTHSRTMLLAR 345 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ +ANM LP ++ GE ++++S+F S ++ G +++A Y Sbjct: 346 GLQATLPLLATWWLLSNLANMALPPSTNLWGELMIMVSLFNWSPFTILMTGLGTLITAAY 405 Query: 424 SL 425 +L Sbjct: 406 TL 407 >gi|40804716|ref|NP_955662.1| NADH dehydrogenase subunit 4 [Auxis rochei] gi|40645769|dbj|BAD06730.1| NADH dehydrogenase subunit 4 [Auxis rochei] gi|40645783|dbj|BAD06743.1| NADH dehydrogenase subunit 4 [Auxis rochei] gi|40714137|dbj|BAD06773.1| NADH dehydrogenase subunit 4 [Auxis rochei] Length = 460 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 200/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDSLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + F + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSAPLQLVSFGDKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGEIMILTSLFNWSYWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|283767201|ref|YP_003377669.1| NADH dehydrogenase subunit 4 [Scomber colias] gi|283362082|dbj|BAI65888.1| NADH dehydrogenase subunit 4 [Scomber colias] Length = 460 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 200/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDLLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQIFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + S + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSAPLQLSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSYWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|167030927|gb|ABZ05794.1| NADH dehydrogenase subunit 4 [Canis lupus chanco] Length = 459 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V++S F SN +L + ++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVVSSFSWSNITIILMGINITITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKXIKPSFTRENA 435 >gi|38304795|gb|AAR16138.1| NADH dehydrogenase subunit 4 [Lepisosteus oculatus] Length = 461 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 202/366 (55%), Gaps = 12/366 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L +D +S L+VLT +L P I++S I R Y+ + L+ +I AF + + Sbjct: 56 YLAIDPLSTPLLVLTCWLLPLMIMASQNHISPEPINRQRMYISLLISLQVFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFY+ FEA+LIP II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 116 IILFYVMFEATLIPTLAIITRWGNQAERLNAGTYFLFYTLVGSLPLLIALLIL--QKDVG 173 Query: 193 SIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLLIQYSPPTLLPSWTNKIWWAACLLAFLVKMPLYGIHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L I + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMVILLDPLTKELAYPFII-LALWGAIMTGSTCLRQTDLKALIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF +Y+R +TR + G+ Sbjct: 293 SHMGLVVGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTVYERTNTRTLLITRGMQTL 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + ++AN+ LP GE ++ S+F S +L +++ +Y+++++ Sbjct: 353 LPLTATWWFIASLANLALPPFPNLTGEMAIMASLFYWSEWTLILTGLAALITIIYTMYMF 412 Query: 429 RKVVFG 434 +G Sbjct: 413 MTTQWG 418 >gi|209447637|gb|ACI47108.1| NADH dehydrogenase subunit 4 [Mirza coquereli] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 196/362 (54%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K Q + Y+ + L+ +I F + ++++F Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESQARKKLYLSMLVSLQMFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYI--QNFLGSLNF 176 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L F W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LTMTMWFQEMSNSWYNNMLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPLTKSMSYPFIL-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIMAILIQTPWSFMGATALMMAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP IGE VIM+ F SN +L ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNITIILTGLNMLITALYSLYMLTTTQ 415 Query: 433 FG 434 G Sbjct: 416 RG 417 >gi|164596314|ref|NP_008052.2|ND4_15105 NADH dehydrogenase subunit 4 [Ornithorhynchus anatinus] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 120/350 (34%), Positives = 198/350 (56%), Gaps = 12/350 (3%) Query: 94 FLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 +L P IL+S K + R Y++ ++L+ ++ AF +++++++YI FE +LIP Sbjct: 71 WLLPLMILASQFHLMKEPMAHKRTYLMLLVILQIALLMAFSAVELIMYYILFETTLIPTL 130 Query: 150 VIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ 208 ++I WG +ER+ A F YT GS+ +L A++ + + + S+ L Sbjct: 131 IVIARWGNQTERLNAGLYFLFYTLLGSLPLLVALIFI--QTQLGSLHILLLTLTPNPLQD 188 Query: 209 YW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 W +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA I+LK+GGYG +R ++ Sbjct: 189 NWSNDILWLACMLAFLVKMPLYGFHLWLPKAHVEAPIAGSMVLAAILLKLGGYGILRIII 248 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 L P+ S++ A ++ +I S + + QTD+K +IAYSS++HMG V Sbjct: 249 ILEPI-SKFMAYPFIIMATWGMIMTSSICLRQTDLKSMIAYSSVSHMGLVVAASLIQTPW 307 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 G GA M++HGL SS LF Y+R+H+R + GL +P + ++ ++AN+ Sbjct: 308 GFMGATAMMIAHGLTSSMLFCLANTNYERIHSRTMLLVRGLQMVLPLMSSWWLLASLANL 367 Query: 385 GLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 GLP T IGE +VI++ F SN +L V++A+YS ++ V G Sbjct: 368 GLPPTINLIGELMVIITTFSWSNFTLILLGLNTVITAIYSFYMLITVQRG 417 >gi|157736253|ref|YP_001491314.1| NADH dehydrogenase subunit 4 [Monodactylus argenteus] gi|139000651|dbj|BAF51838.1| NADH dehydrogenase subunit 4 [Monodactylus argenteus] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 200/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTASEPVNRQRMYISLLTSLQVFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSNPLLLTTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVVLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S VL G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLVLTGAGTLITAGYSLYMF 412 >gi|2290424|gb|AAD04682.1| NADH dehydrogenase subunit 4 [Trachypithecus francoisi] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 135/400 (33%), Positives = 216/400 (54%), Gaps = 15/400 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLS 131 S +L +D +S L+ LT +L P I++S + EN + Y+ + L+ +I F+S Sbjct: 53 STYLSLDPLSTPLLTLTAWLLPLMIMASQYHLHNENLSRKKLYLSMMIFLQISLIMTFMS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L +++ + Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLAGSLPLLI-MLMFTYNNM 171 Query: 191 TSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S I L ++ + + W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLNIMLLTLTAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L PL ++Y A LSL +I S + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMRLTSILNPL-TEYMAYPFLMLSLWGMIMTSSTCLRQTDLKALIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVITASLIQTPWSFTGAIILMIAHGLTSSMLFCLANSNYERTHSRIMLFSRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A V + N+ LP T IGE LV+ ++F S+ +L ++++ALYSL++ Sbjct: 351 LLPLMASWWFVANLTNLALPPTINLIGELLVMATLFSWSHVTIMLTGLNMLITALYSLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + +K RE +++ PI +L++ Sbjct: 411 FITTQRG-TLTSHIMNMKPSFTRENMLMFMHISPIILLSL 449 >gi|315142520|gb|ADT82448.1| NADH dehydrogenase subunit 4L [Symphalangus syndactylus] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/367 (32%), Positives = 198/367 (53%), Gaps = 25/367 (6%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FE +LIP +II WG ER+ A F Y Sbjct: 93 KLYLSMLIILQISLIMTFTATELMMFYILFETTLIPTLIIITRWGNQPERLNAGSYFLFY 152 Query: 171 TFFGSIFMLFAIV----------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 T GS+ +L A++ +M + ++ D ++ MW+A+ +F Sbjct: 153 TLVGSLPLLIALIHTHNTLGSLNIMLLNLSSQNLTDSWS--------NNLMWLAYMMAFM 204 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL P + Sbjct: 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPLTKHMAYPFLM- 263 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL +I S + + QTD+K LIAYSS++HM V I GA+ M++HGL S Sbjct: 264 LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFTGAIVLMIAHGLTS 323 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S LF Y+R H+R + GL P A ++ +AN+ LP T +GE V+M Sbjct: 324 SLLFCLANSNYERTHSRIMILSRGLQTLFPLMAFWWLMANLANLALPPTINLLGELFVLM 383 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VY 456 + F +NT +L ++++ALYSL+++ G+ ++ +K RE + ++ Sbjct: 384 ASFSWANTTIMLTGLNMLITALYSLYMFIMTQRGM-LTHHIKNMKPSLTRENMLMFMHLF 442 Query: 457 PIAVLTV 463 P+ +L++ Sbjct: 443 PLLLLSI 449 >gi|156072988|gb|ABU45817.1| NADH dehydrogenase subunit 4 [Eulemur fulvus sanfordi] gi|156072993|gb|ABU45821.1| NADH dehydrogenase subunit 4 [Eulemur fulvus sanfordi] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/356 (34%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLMILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYMGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|2499266|sp|Q36458|NU4M_ORNAN RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|1469259|emb|CAA58451.1| NADH dehydrogenase subunit 4 [Ornithorhynchus anatinus] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 120/350 (34%), Positives = 198/350 (56%), Gaps = 12/350 (3%) Query: 94 FLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 +L P IL+S K + R Y++ ++L+ ++ AF +++++++YI FE +LIP Sbjct: 71 WLLPLMILASQFHLMKEPMAHKRTYLMLLVILQIALLMAFSAVELIMYYILFETTLIPTL 130 Query: 150 VIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ 208 ++I WG +ER+ A F YT GS+ +L A++ + + + S+ L Sbjct: 131 IVIARWGNQTERLNAGLYFLFYTLLGSLPLLVALIFI--QTQLGSLHILLLTLTPNPLQD 188 Query: 209 YW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 W +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA I+LK+GGYG +R ++ Sbjct: 189 NWSNDILWLACMLAFLVKMPLYGFHLWLPKAHVEAPIAGSMVLAAILLKLGGYGILRIII 248 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 L P+ S++ A ++ +I S + + QTD+K +IAYSS++HMG V Sbjct: 249 ILEPI-SKFMAYPFIIMATWGMIMTSSICLRQTDLKSMIAYSSVSHMGLVVAASLIQTPW 307 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 G GA M++HGL SS LF Y+R+H+R + GL +P + ++ ++AN+ Sbjct: 308 GFMGATAMMIAHGLTSSMLFCLANTNYERIHSRTMLLVRGLQMVLPLMSSWWLLASLANL 367 Query: 385 GLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 GLP T IGE +VI++ F SN +L V++A+YS ++ V G Sbjct: 368 GLPPTINLIGELMVIITTFSWSNFTLILLGLNTVITAIYSFYMLITVQRG 417 >gi|77020031|ref|YP_337789.1| NADH dehydrogenase subunit 4 [Saccoglossus kowalevskii] gi|50511954|gb|AAQ92985.1| NADH dehydrogenase subunit 4 [Saccoglossus kowalevskii] Length = 462 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 134/383 (34%), Positives = 209/383 (54%), Gaps = 14/383 (3%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGA 128 + S L D +S L++L+ +L P +L+S + + + R Y+ L +I Sbjct: 52 HTLSTSLATDSLSSPLIILSAWLLPLSLLASRQHLSKEPLARQRSYLTLLSSLVLSLIIT 111 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F +LD++LFYI FEA+L+P ++I WG ER+ A F YT FGS +L +++ + Sbjct: 112 FSALDLILFYIAFEATLVPTLIVITRWGNQPERLQAGTYFLFYTLFGSFPLLISLLSLLS 171 Query: 188 EKKT-----SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + SS+ DL + S+ W WIA +F K+P++ H WLP AHV+AP A Sbjct: 172 LTSSASIPLSSLNDLSTLEFSNPSLALW-WIASIIAFLAKLPIYGLHLWLPKAHVEAPIA 230 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA I+LK+GGYG +R + LF L + + + I + + S++ + QTD+K L Sbjct: 231 GSMILAAILLKLGGYGLVR-ITALFSLPNSFASEPIITFCIWGGLITSIICIRQTDMKAL 289 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+ HM V GIFS G+ GA+ M++HGL+SSALF + Y+R TR + Sbjct: 290 IAYSSVGHMSLVAAGIFSETTWGLNGALILMIAHGLISSALFCLANLSYERTFTRTLSLN 349 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL P A ++ + AN+ LP T F GE L++ ++ + A+ + +A+ Sbjct: 350 RGLKLITPLSAAWWLIVSAANLALPPTPNFSGELLIVTNLISWNPWTALFLGLTALFTAI 409 Query: 423 YSLWLYRKVVF--GVSKCEKVQQ 443 YSL+LY+ S +K+ Q Sbjct: 410 YSLYLYQSSQHSPNPSSFKKISQ 432 >gi|317097150|ref|YP_004123279.1| NADH dehydrogenase subunit 4 [Rattus tunneyi] gi|290573407|gb|ADD46526.1| NADH dehydrogenase subunit 4 [Rattus tunneyi] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 135/393 (34%), Positives = 213/393 (54%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S +++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMVLASQNHMKKETLTHQKLYISMLISLQILLTMTFSTTELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALLSIQNSMGTLNFLI 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + L A S MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LSLTAQSLSSTWSNNIMWLACMMAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRVSIILDPLTKSLAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I GA M++HGL SS LF Y+R+H+R + GL P A Sbjct: 298 ITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP +GE ++M+ F SNT +L + +V++ +YS+++ G Sbjct: 358 WWLLASLANLALPPLINLMGELFIVMATFSWSNTSIILTATNIVITGMYSMYMIITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + L+ RE + + P+ +LT+ Sbjct: 418 -KLTSHMNNLQPSHTRELTLMTLHIIPLMLLTI 449 >gi|109156433|ref|YP_654271.1| NADH dehydrogenase subunit 4 [Galemys pyrenaicus] gi|56714043|gb|AAW23991.1| NADH dehydrogenase subunit 4 [Galemys pyrenaicus] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 205/381 (53%), Gaps = 9/381 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFL-VLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S + N ++ I+ L VL+ +I F + +++LF Sbjct: 59 DSLSTPLLMLTTWLLPLMLMASQHHLSNESLNRKKLYISMLGVLQVFLIMTFSATELVLF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FE +L+P +II WG +ER+ A F YT GS+ +L A+ + +E + + Sbjct: 119 YILFETTLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALTYLQNYEGSLNFLT 178 Query: 196 DLYAMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + P + M W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LQLTHTTLPNNWSSSMLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P Y A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRISVILSP-HMNYMAYPFLILSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M+SHGL SS LF Y+R H+R + GL +P A Sbjct: 298 IVAVMIQTPWSYMGATALMVSHGLTSSMLFCLANSNYERTHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE LV++S F SN ++ + ++ALY+L++ + G Sbjct: 358 WWLLASLTNLALPPTINLIGELLVMLSSFSWSNMTMIMMGVNMTITALYTLYMLIQTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCMV 455 + L RE ++ Sbjct: 418 -KHTHHIMNLNPSFTREHALM 437 >gi|9828521|gb|AAG00218.1| NADH dehydrogenase subunit 4 [Ochotona erythrotis] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 211/361 (58%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +E + ++ I+ LVL + +I F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKETYPRKKLFISMLVLLQIFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYVHNTTGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + M++ P S + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQLMAR-PLSDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE L+IMS F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINLIGELLIIMSSFSWSNLTIILAGTNMLITALYTLYMLTTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|110432430|gb|ABG73764.1| NADH dehydrogenase subunit 4 [Lepilemur edwardsi] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 199/372 (53%), Gaps = 28/372 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTMWLLPLTIMASQYHLTKEPSQRKKHFLFTLIFLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVAL----------SSIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F I++P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMVTYWSQEMPNSWSNSLMWMACIMAFMIQMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERVHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITMATFSWSNVTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVS 436 L++ G S Sbjct: 408 LYMLTMTQRGKS 419 >gi|51339464|gb|AAU00494.1| NADH dehydrogenase subunit 4 [Martes americana] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/388 (32%), Positives = 209/388 (53%), Gaps = 29/388 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLMLTTWLLPLMLMASQHHLSKETLTRKKLYITMLVMLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T +++ Sbjct: 119 YILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLWLQSNLGTLNLL- 177 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 178 ---------VIQYWTQPLLSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPL-TDFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMVLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T +GE V+M+ F SN +L + ++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIILMGINITITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KYTHHIKNIKPSFTREN 434 >gi|25057371|ref|NP_740045.1| NADH dehydrogenase subunit 4 [Cottus reinii] gi|25006036|dbj|BAC23653.1| NADH dehydrogenase subunit 4 [Cottus reinii] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 201/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NFYMATDALSTPLLVLTCWLLPLMILASQNHTASEPLSRQRTYLTLLTSLQFFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLILITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L S + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSDPIELSSYAHKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMVVMLEPLTKELSYPFIVF-ALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFSGALVLMIAHGLASSALFCLANTSYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S ++ G +++A YSL++ Sbjct: 352 VLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFSWSWWTIIMTGAGTLITASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|110432690|gb|ABG73972.1| NADH dehydrogenase subunit 4 [Lepilemur ruficaudatus] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 130/403 (32%), Positives = 206/403 (51%), Gaps = 33/403 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ L +L P I++S K E + ++ + L +I F + ++++F Sbjct: 59 DPLSSPLLTLAMWLFPLTIMASQYHLAKEPSERKKHFLFTLISLRLFLILTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWTQELANSWSSDLMWVACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITIILDPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + +GE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLVGELFITMATFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 L++ G RE + V+P+ +LT+ Sbjct: 408 LYMLTMTQRG-EPLYHAHNFNPSLTRENALMSMHVFPLLLLTL 449 >gi|208433867|ref|YP_002265480.1| NADH dehydrogenase subunit 4 [Anoplocapros lenticularis] gi|207367069|dbj|BAG72043.1| NADH dehydrogenase subunit 4 [Anoplocapros lenticularis] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 199/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+ LT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 SPYMATDPLSTPLLALTCWLLPLMILASQSHTALEPINRQRMYITLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEVIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L M ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSDPMQLCTYADKLW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLTVLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTTWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWPTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|114223866|gb|ABI54745.1| NADH dehydrogenase subunit 4 [Indri indri] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 201/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + R+ Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQYHLMKEPSLRKKFYLSMLISLQMFLVMTFTASELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ M + +S + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYM---QNSSGSXN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L M+ + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 LLTMNFWLKELPNSWSNNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTVLDP-TTKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSLYM 410 >gi|47588807|gb|AAT36012.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|47588827|gb|AAT36016.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|47588847|gb|AAT36020.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|47588876|gb|AAT36024.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 129/402 (32%), Positives = 208/402 (51%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKESWERKKHFLSVLISLQLFLIMTFTAAELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWTQELSNSWSSSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ + N+ +P + +GE L+ M++F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLAGLTNLAMPPSINLVGELLITMAIFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGEPPYHAHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|221145487|ref|YP_002519699.1| NADH dehydrogenase subunit 4 [Pseudobalistes flavimarginatus] gi|219806889|dbj|BAH10261.1| NADH dehydrogenase subunit 4 [Pseudobalistes flavimarginatus] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 206/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK--SIQENFREYM-IAFLV-LESMVIGAFLS 131 + +L DG+S L+VLT +L P IL+S +++ + R+ M I+ L L+ +I AF + Sbjct: 54 NLYLATDGLSTPLLVLTCWLLPLMILASQNHLTLEPHNRQRMYISLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++L+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVLMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNT 171 Query: 191 TSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQHTTPICTNTWANKFWWAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L L PL + P I L+L ++ + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMLTILDPLTKELSYPFII-LALWGVVMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 291 SVSHMGLVVGGILIQSPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGFQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A+ + ++AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 VALPLMAMWWFLASLANLALPPLPNLMGELMIITSLFNWSWWTIALTGAGTLITAGYSLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|157364921|ref|YP_001471738.1| NADH dehydrogenase subunit 4 [Acanthurus leucosternon] gi|157102111|gb|ABV23686.1| NADH dehydrogenase subunit 4 [Acanthurus leucosternon] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 205/368 (55%), Gaps = 24/368 (6%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S + R ++ L+ +I AF++ Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHMASEPSARQRTFITLMTSLQIFLIMAFIA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK- 189 ++++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + EK Sbjct: 114 TELMMFYIMFEATLIPKLILITRWGSQTERLNAGTYFLFYTLAGSLPLLVALLAL--EKT 171 Query: 190 ---------KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + ++ I L + +S + W W A F +K+P++ H WLP AHV+AP Sbjct: 172 TGTLSLLTLQYTNYIHLTS-----YSDKLW-WAACLLGFLVKMPLYGVHIWLPKAHVEAP 225 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGS+ LA ++LK+GGYG +R L L PL + P I L+L II + + QTD+K Sbjct: 226 VAGSMILAAVLLKLGGYGMMRILTVLEPLTKELSYPFIA-LALWGIIMTGSICLRQTDLK 284 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 LIAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 285 SLIAYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMV 344 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL +P A + ++AN+ LP +GE ++I S+F S +L G +++ Sbjct: 345 LARGLQMALPLMATWWFLGSLANLALPPLPNLMGELMIITSLFNWSWWTLILTGIGTLIT 404 Query: 421 ALYSLWLY 428 A YSL+++ Sbjct: 405 AGYSLYMF 412 >gi|115494785|ref|YP_778834.1| NADH dehydrogenase subunit 4 [Erignathus barbatus] gi|115344979|emb|CAJ57023.1| NADH dehydrogenase subunit 4 [Erignathus barbatus] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 126/380 (33%), Positives = 204/380 (53%), Gaps = 9/380 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S + + + ++ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQHHLSKESPTRKKLFITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALLFVQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 +I L+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 178 MIQLWTQPMSNSWSNILLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITTLLNPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 297 VIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQVLLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 357 AWWLLASLTNLALPPSINLIGELFVVMASFSWSNITVILMGANIIITALYSLYMLITTQR 416 Query: 434 GVSKCEKVQQLKDLSLRERC 453 G ++ +K RE Sbjct: 417 G-KYTHHIKNIKPSFTRENA 435 >gi|327492691|ref|YP_004347583.1| NADH dehydrogenase subunit 4 [Sphoeroides testudineus] gi|327392332|dbj|BAK09778.1| NADH dehydrogenase subunit 4 [Sphoeroides testudineus] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 203/364 (55%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F S ++ D +S L++L+ +L P IL+S N + I+ L L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLILSCWLLPLMILASQNHTAHEPINRQRMYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 ASTEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLLQ-N 170 Query: 189 KKTSSIIDLYAMSKFP----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 S + + P ++ + W W +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 SNGSLSLLTLLHTSTPQLSTYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGMMRILVTLEPLTKELSYPFII-LALWGVIMTGSICMRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P A + ++AN+ LP +GE ++I S+F S L G +++A YS Sbjct: 349 MQMALPLMAAWWFIASLANLALPPLPNLMGELMIITSMFNWSWWTIALTGLGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|310788932|gb|ADP24469.1| NADH dehydrogenase subunit 4 [Puntioplites waandersi] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 215/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYIMLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLLGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + ++ L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIKGLQPFHTREHLLM 438 >gi|189492592|gb|ACE01305.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492662|gb|ACE01370.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 129/379 (34%), Positives = 208/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 VVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMVLARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SNT +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNTTIILMGINIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|146160795|gb|ABQ08636.1| NADH dehydrogenase subunit 4 [Anarhichas denticulatus] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P I++S R Y+ L+ +I AF + + Sbjct: 56 YMATDLLSTPLLVLTCWLLPLMIMASQSHTALEPINRQRTYITLLTSLQIFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLLQNSAGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSDPVQLTSYADKLW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMVVMLDPLTQELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFSGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P V ++AN+ LP +GE ++I S+F S VL G +++A YSL+++ Sbjct: 354 PLMTTWWFVASLANLALPPLPNLMGEIMIITSMFNWSWWTLVLTGAGTLITASYSLYMF 412 >gi|327492565|ref|YP_004347466.1| NADH dehydrogenase subunit 4 [Canthigaster valentini] gi|327392276|dbj|BAK09726.1| NADH dehydrogenase subunit 4 [Canthigaster valentini] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 205/365 (56%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F + +L D +S L+VL+ +L P IL+S N + I+ L L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLVLSCWLLPLMILASQNHTTHEPINRQRMYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 GATEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 S+ L + P ++ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NSNGSLSLLTLLHSTPPHLSTYADKLW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L+ L PL + P I L+L II + M QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRILVTLEPLTKELSYPFII-LALWGIIMTGSICMRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + ++AN+ LP +GE ++I S+F S +L G +++A Y Sbjct: 348 GLQMALPLMTTWWFLASLANLALPPLPNLMGELMIITSLFNWSWWTIILTGLGTLITAGY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|47588902|gb|AAT36028.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 129/402 (32%), Positives = 208/402 (51%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKESWERKKHFLSVLISLQLFLIMTFTAAELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWTQELSNSWSSSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ + N+ +P + +GE L+ M++F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLAGLTNLAMPPSINLVGELLITMAIFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGEPPYHAHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|327492887|ref|YP_004347845.1| NADH dehydrogenase subunit 4 [Tetraodon miurus] gi|327392416|dbj|BAK09856.1| NADH dehydrogenase subunit 4 [Tetraodon miurus] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 202/365 (55%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L+VL+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLTPYLATDPLSTPLLVLSCWLLPLMILASQNHTAHEPINRQRMYITLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 AATEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 S+ L + P ++ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NSNGSLSLLTLLHSTPPHLSTYADKIW-WAGCMLAFLVKMPLYGAHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L+ L PL + P I L+L II + M QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRILVTLEPLNKELSYPFII-LALWGIIMTGSICMRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVIGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + ++AN+ LP +GE ++I S+F S + G +++A Y Sbjct: 348 GLQMALPLMTTWWFIASLANLALPPLPNLMGELMIITSMFNWSWWTITMTGLGTLITAGY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|108767390|ref|YP_636131.1| NADH dehydrogenase subunit 4 [Percina macrolepida] gi|105873663|gb|ABF74887.1| NADH dehydrogenase subunit 4 [Percina macrolepida] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTASEPLNRQRMYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 VIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLLQNNVGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLVTLQFSDPLQLTSFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMLRIVVMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S L G++++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELMIVTSLFSWSWWTLALTGAGMLITASYSLYMF 412 >gi|10954189|gb|AAG25801.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/356 (34%), Positives = 200/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWTLKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL P + S +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPLTKHMAYPFLMLCSW-GMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|88061931|gb|ABD38942.1| NADH dehydrogenase subunit 4 [Pogonias cromis] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 203/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWK--SIQENFREYMIAFLV--LESMVIGAF 129 F S ++ D +S L+VLT +L P IL+S +++ R+ M L+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPTNRQRMYITLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 SGTLSLLTLQFSNPTQLITFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRMLPMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|53686456|ref|YP_097098.1| NADH dehydrogenase subunit 4 [Pseudotriton ruber] gi|51979865|gb|AAU20535.1| NADH dehydrogenase subunit 4 [Pseudotriton ruber] Length = 457 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 204/359 (56%), Gaps = 9/359 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FREYM-IAFLV-LESMVIGAF 129 + +LGVD IS L++LT +L P IL+S ++ N R+ M I+ L L+ +I AF Sbjct: 51 MTNKYLGVDKISSPLLMLTCWLLPLMILASQNHLKTNPLSRQQMYISMLTALQVALILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 111 SSTELILFYITFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLFLLTS 170 Query: 189 KKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + + S+ LY+ + S +W+ +F IK+P++ H WLP AHV+AP AGS+ Sbjct: 171 QSSLSLSLLYSSKEMFLMNSTNKILWLGCLTAFMIKMPLYGAHLWLPKAHVEAPVAGSMI 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG IR PL + ++ L+L + L+ QTD+K LIAYS Sbjct: 231 LAAILLKLGGYGIIRITTMFTPLIELSYPFIV--LALWGXLMTGLICTRQTDLKSLIAYS 288 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GA+ M+SHGL+SSALF + Y+R H+R + GL Sbjct: 289 SVSHMGLVVAAALIQTPWSFAGAVILMISHGLISSALFCLANMNYERTHSRTMLLTRGLQ 348 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ ++NM LP T+ GE +++MS+F S +L G +++A Y+L Sbjct: 349 TTLPLLATWWLLSNLSNMALPPTTNLWGELMIMMSLFNWSPWTILLTGLGTLITAAYTL 407 >gi|312233419|ref|YP_004021738.1| NADH dehydrogenase subunit 4 [Pseudomys chapmani] gi|161621725|gb|ABX75338.1| NADH dehydrogenase subunit 4 [Pseudomys chapmani] Length = 458 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 132/396 (33%), Positives = 215/396 (54%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG----AFLSLDMLLF 137 D +S L++LTT+L P +++S +++ Y ++ + + F +++LF Sbjct: 58 DNLSTPLIILTTWLLPLMLMASQNHMKKEKNMYQKMYISMLINLQILLILTFSVNELILF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L +V+ + + ++ ++ Sbjct: 118 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSIPLL---IVLIYIQNSTGTLN 174 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 +S I W MW++ +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 175 FLIISLTNTHIDNTWSSNIMWLSCMMAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAIL 234 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 235 LKLGGYGMMRISIMLDPL-TKHMAYPFMLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 293 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GAM M++HGL SS LF Y+R+H+R + GL P Sbjct: 294 ALVITSIMIQTPWSFMGAMMLMIAHGLTSSLLFCLANSNYERIHSRTMIMARGLQTIFPL 353 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ ++ ++ NM +P T IGE + MS+F SNT +L ++++ALYS+++ Sbjct: 354 MTMLWLLASLTNMAIPPTINLIGELFITMSLFSWSNTSIILIGLNIIITALYSMYMIITT 413 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 G + + RE ++ P+A+LT+ Sbjct: 414 QRG-KLTNHMNNMHPSHTRELTLMTLHLIPLALLTM 448 >gi|110432929|gb|ABG74163.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/366 (34%), Positives = 205/366 (56%), Gaps = 14/366 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLVLTMWLFPLTIVASQYHLTKEPWERKKHFLSTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSHI---QNSMGTLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + + L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPLTKSMAYPFLM-MCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERIHSRTMLLARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ +++N+ LP + +GE LV M+ F SNT +L ++++A YSL++ Sbjct: 355 MSTWWLLASLSNLALPPSINLLGELLVTMAAFSWSNTTIILTGLNMLITATYSLYMLTTT 414 Query: 432 VFGVSK 437 G S Sbjct: 415 QRGKSS 420 >gi|30065686|ref|NP_839846.1| NADH dehydrogenase subunit 4 [Lepisosteus oculatus] gi|13537024|dbj|BAB40738.1| NADH dehydrogenase subunits 4 [Lepisosteus oculatus] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 202/366 (55%), Gaps = 12/366 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L +D +S L+VLT +L P I++S I R Y+ + L+ +I AF + + Sbjct: 56 YLAIDPLSTPLLVLTCWLLPLMIMASQNHISPEPINRQRMYISLLISLQVFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFY+ FEA+LIP II WG +ER+ A F YT GS+ +L A++++ +K Sbjct: 116 IILFYVMFEATLIPTLAIITRWGNQAERLNAGTYFLFYTLVGSLPLLIALLIL--QKDVG 173 Query: 193 SIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLLIQYSPPTLLPSWTNKIWWAACLLAFLVKMPLYGIHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL + P I L+L I + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMVILLDPLTKELAYPFII-LALWGAIMTGSTCLRQTDLKALIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF +Y+R +TR + G+ Sbjct: 293 SHMGLVVGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTVYERTNTRTLLITRGMQTL 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + ++AN+ LP GE ++ S+F S +L +++ +Y+++++ Sbjct: 353 LPLTATWWFIASLANLALPPFPNLTGEMAIMASLFYWSEWTLILTGLAALITIIYTMYMF 412 Query: 429 RKVVFG 434 +G Sbjct: 413 MTTQWG 418 >gi|110432640|gb|ABG73932.1| NADH dehydrogenase subunit 4 [Lepilemur dorsalis] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/384 (33%), Positives = 205/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLALTTWLLPLTIMASQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QNHTGTLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + + W MW+A +F IK+P++ H WLP A V+AP AGS+ LA I+ Sbjct: 176 LFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKADVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YSL + Sbjct: 355 MSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILMGLNMLITATYSLHMLATT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S + L RE ++ Sbjct: 415 QRGKS-LYHMHNLNPCLTRENTLM 437 >gi|37620630|gb|AAQ95124.1| NADH dehydrogenase subunit 4 [Arctocephalus australis] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 122/348 (35%), Positives = 191/348 (54%), Gaps = 11/348 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFAATELVMFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS-IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A++ M T + ++ Y P S W +W+A +F +K+P+ Sbjct: 153 TLVGSLPLLVALLYMQNNMGTLNFLVAQYWTQTLPNS---WSNILLWLACMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S + A LS+ Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLNPLTS-FMAYPFMMLSMWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPLSYMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R H+R + GL +P A ++ ++ N+ LP T IGE LV+M+ F Sbjct: 329 LANSNYERTHSRIMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELLVVMASFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SN +L ++++ALYSL++ G ++ +K RE Sbjct: 389 SNATIILMGVNIIITALYSLYMLIMTQRG-KHTHHIKNIKPSFTRENT 435 >gi|110432620|gb|ABG73916.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/366 (34%), Positives = 205/366 (56%), Gaps = 14/366 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLVLTMWLFPLTIVASQYHLTKEPWERKKHFLSTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLIIISRWGNQTERLNAGLYFLFYTLTGSLPLLVALSHI---QNSMGTLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + + L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPLTKSMAYPFLM-MCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERIHSRTMLLARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ +++N+ LP + +GE LV M+ F SNT +L ++++A YSL++ Sbjct: 355 MSTWWLLASLSNLALPPSINLMGELLVTMAAFSWSNTTIILTGLNMLITATYSLYMLTTT 414 Query: 432 VFGVSK 437 G S Sbjct: 415 QRGKSS 420 >gi|295293460|gb|ADF88009.1| NADH dehydrogenase subunit 4 [Pan troglodytes ellioti] gi|295293474|gb|ADF88022.1| NADH dehydrogenase subunit 4 [Pan troglodytes ellioti] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 220/396 (55%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + T ++ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALI---YTHNTLGSLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + ++ + W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 ILLLTLTTQELSNTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVVTAILIQTPWSFTGAITLMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 355 MAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + +K RE +++ PI +L++ Sbjct: 415 QWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|16357174|ref|NP_443498.1| NADH dehydrogenase subunit 4 [Neoscopelus microchir] gi|16266873|dbj|BAB70062.1| NADH dehydrogenase subunit 4 [Neoscopelus microchir] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 200/358 (55%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L++L+ +L P IL+S + Q R Y+ L+ ++ AF + ++ Sbjct: 57 MATDPLSTPLLILSCWLLPLMILASQNHMAHEPQNRQRTYISLLTSLQFFLVLAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ E T S Sbjct: 117 FMFYIMFEATLIPTLMIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNEAGTLS 176 Query: 194 IIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L +S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQYGKPLLLSTWSNKMW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL+ + P I L+L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMALLDPLSKELAYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + G+ +P Sbjct: 295 MGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMILARGMQTVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + +AN+ +P +GE ++I S+F S L G +++A YSL+++ Sbjct: 355 LMATWWFITNLANLAVPPLPNLMGELMIITSLFNWSPWTLALTGLGTMITAGYSLYMF 412 >gi|28916745|ref|NP_803166.1| NADH dehydrogenase subunit 4 [Pisaster ochraceus] gi|44888989|sp|P24998|NU4M_PISOC RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|28881690|emb|CAA39131.2| NADH dehydrogenase subunit 4 [Pisaster ochraceus] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 143/408 (35%), Positives = 224/408 (54%), Gaps = 30/408 (7%) Query: 39 GISTIN-FIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 IS IN FI + F +V + +H I S + G+D +S L++L+T+L P Sbjct: 25 SISIINAFIITFFALNVLNN-----HFFSLWHNI----SLNFGIDNLSAPLIILSTWLIP 75 Query: 98 FCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 +L+S S + R ++ + ++ F +L++ LF+I FE++L+P V+I Sbjct: 76 ISLLASINSTNPYTPNSQRTFISTIFFILLALLLTFSALELSLFFIAFESTLLPTLVLIT 135 Query: 154 VWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII--------DLYAMSKFP 204 WG ER A F YT GS+ +L AI+ + SS+I ++ + S Sbjct: 136 RWGAQKERFQAGIYFIFYTLAGSLPLLIAIISL--YNINSSLILPSIYLSTNILSFSSAT 193 Query: 205 FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 SI W WI F +F IK+P++ FH WLP AHV+AP AGS+ LA I+LK+GGYG R L Sbjct: 194 LSI--W-WIFCFIAFIIKMPIYGFHLWLPKAHVEAPIAGSMILAAILLKLGGYGLARTTL 250 Query: 265 PLFPLASQYFA-PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMK 323 F +++ Y + P+I F A+I S++ + QTD+K LIAYSS+ HM V GIF+ Sbjct: 251 IFFFISANYISFPLITFCIWGALI-TSIICIRQTDLKALIAYSSVGHMSMVAAGIFTLSP 309 Query: 324 SGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMAN 383 G+ GA M++HGL+SS+LF ++Y+R +TR + G P ++ ++ + N Sbjct: 310 WGINGATTLMIAHGLISSSLFCLANILYERNNTRTLAITRGFKLITPLLSLWWIITCVTN 369 Query: 384 MGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 +GLP T IGE L+I SV + + ++ + V A+YSL +++ Sbjct: 370 LGLPPTPNLIGELLIISSVINWNISSFIIITSATVFGAIYSLLIFQNT 417 >gi|315142728|gb|ADT82641.1| NADH dehydrogenase subunit 4L [Nomascus concolor] Length = 458 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 122/350 (34%), Positives = 191/350 (54%), Gaps = 9/350 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYI FE +LIP +II WG ER+ A F Y Sbjct: 92 KLYLSMLITLQVSLIMTFTATELMMFYILFETTLIPTLIIITRWGNQPERLNAGSYFLFY 151 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L S P W MW+A +F +K+P++ Sbjct: 152 TLVGSLPLLIALIHTHNTLGSLNIMLLTLSS--PSLTNSWSNNIMWLACVMAFMVKMPLY 209 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 210 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLMLSLWGM 268 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSS++HM V I GA M++HGL SS LF Sbjct: 269 IMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFTGATVLMVAHGLTSSLLFCL 328 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A + ++AN+ LP T +GE V+M+ F + Sbjct: 329 ANSNYERTHSRTMILSRGLQTLLPLMAFWWLTASLANLALPPTINLLGELFVLMASFSWA 388 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 NT L ++++ALYSL+++ G + ++ +K RE +++ Sbjct: 389 NTTIALTGLNMLITALYSLYMFITTQRG-TLTHHIKNMKPSLTRENMLMF 437 >gi|255077711|gb|ACU00348.1| NADH dehydrogenase subunit 4 [Dicamptodon aterrimus] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 210/356 (58%), Gaps = 10/356 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLL 136 VD IS L++LT +L P IL+S +++N R Y+ ++L+ +I AF S++++L Sbjct: 58 VDQISSPLLILTCWLLPLMILASQNHLKKNPLNRQRMYISMLIILQMSLILAFTSMEIIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FE++LIP +II WG +ER+ A F YT GS+ +L A++++ + S++ Sbjct: 118 FYITFESTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQNSLGSLSLL 177 Query: 196 D---LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + M +S + +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLEFMQPMCMLTYSNKL-IWLACMVAFLVKMPLYGFHLWLPKAHVEAPIAGSMILAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL + + + ++L ++ L+ M QTD+K LIAYSS++HMG Sbjct: 237 KLGGYGILRITMLLTPLMKE-LSYLFIIMALWGVLMTGLICMRQTDLKSLIAYSSVSHMG 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V GAM M+SHG++SSALF + Y+R ++R + G +P Sbjct: 296 MVIAAALIQTPWSFTGAMILMISHGIISSALFCLANMNYERTYSRTLILMRGTQTILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A+ ++ ++NM LP + GE +++S+F S ++ G +++A Y+L++Y Sbjct: 356 ALWWLLTNLSNMALPPSLNLWGELTIMVSMFNWSPWTMLILGLGTLITATYTLYMY 411 >gi|222839615|ref|YP_002587010.1| NADH dehydrogenase subunit 4 [Pseudolabrus eoethinus] gi|170292925|gb|ACB12508.1| NADH dehydrogenase subunit 4 [Pseudolabrus eoethinus] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 201/361 (55%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++GVD +S L+VL+ +L P I++S + R Y+ + L+S +I AF + + Sbjct: 56 YMGVDPLSSPLLVLSCWLLPLMIIASQNHMSSEPIHRQRLYITLMISLQSFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 VIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNTTG 173 Query: 193 SIIDLYAMSKFPF-----SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+ L P + +W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSMLTLQYAKPLIYASHADNFW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRILIILDPLTKELGYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R HTR + GL Sbjct: 292 VGHMGLVVGGILIQTPWGFAGALILMIAHGLTSSALFCLANTNYERTHTRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP + E +VI +F S L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMAELMVITGMFNWSWWTLALTGTGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|239997519|gb|ACS37036.1| NADH dehydrogenase subunit 4 [Caecilia volcani] Length = 458 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/385 (32%), Positives = 203/385 (52%), Gaps = 10/385 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAF 129 F + D S L++LT +LTP I++S + + R Y+ + L+ +I AF Sbjct: 51 FITKWTATDQFSSPLMILTCWLTPMMIIASQNHLILAPKPRQRTYISMVITLQVTLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + + ++FYI FEA+LIP +II WG ER+ A F YT GS+ +L AI+ + Sbjct: 111 SAAEFIMFYIMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLLGSMPLLVAIMALSSF 170 Query: 189 KKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + S+ ++ + + W W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 TGSLSMTNMMLTCQIESTTTNNIW-WLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 229 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R L P + P + LSL II S + + Q+D+K LIAYS Sbjct: 230 LAAILLKLGGYGILRISTLLSPFTKELIFPFMI-LSLWGIIMTSSICLRQSDLKSLIAYS 288 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V G+ GA+ M++HGL SS LF Y+R H R + GL Sbjct: 289 SVSHMALVISAALIQTPWGLTGAIVLMIAHGLTSSMLFCLANTNYERTHNRTMILSRGLQ 348 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A+ ++ + NM +P +GE +I ++F S ++ G+V++A+Y+L Sbjct: 349 TILPLMALWWLLANLTNMAVPPYPNLMGELTIISALFNWSYLTIIMTGVGIVITAMYTLH 408 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRE 451 ++ G + + + L RE Sbjct: 409 MFLTTQRGPTP-KHINLLNPSHTRE 432 >gi|317134199|ref|YP_004123411.1| NADH dehydrogenase subunit 4 [Rattus sordidus] gi|290573449|gb|ADD46565.1| NADH dehydrogenase subunit 4 [Rattus sordidus] Length = 459 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 134/393 (34%), Positives = 212/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P IL+S +++ + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMILASQNHMKKETLTHQKLYISMLISLQILLIMTFSTTELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALLSIQNSMGTLNFLI 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + L P MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LSLTTQPLSPTWSNSIMWLACMMAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRVSIILDPLTKSLAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I GA M++HGL SS LF Y+R+H+R + GL P A Sbjct: 298 ITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMVFPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP +GE ++M+ F SN +L + ++++ +YS+++ G Sbjct: 358 WWLLASLANLALPPLINLMGELFIVMATFSWSNPSIILTATNIIITGMYSMYMIITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + L+ RE + + P+ +LT+ Sbjct: 418 -KLTSHMNNLQPSHTRELTLMTLHIIPLMLLTI 449 >gi|288908963|dbj|BAI77205.1| NADH dehydrogenase subunit 4 [Chaenophryne melanorhabdus] Length = 460 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y++ + L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHMASEPLNRQRMYILLLISLQLFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYILFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNNTGTL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S P + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSSPCPLTSYGDKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L L PL + P + F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLAMLEPLTKELSYPFVIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ + Sbjct: 294 HMGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTSYERTHSRTMILARGMQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S+ L G +++A YSL+++ Sbjct: 354 PLMTSWWFIASLANLALPPLPNLMGELMILTSLFNWSHWTIALTGGGTLITAAYSLYMF 412 >gi|156073083|gb|ABU45893.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073093|gb|ABU45901.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073108|gb|ABU45913.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073123|gb|ABU45925.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073128|gb|ABU45929.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073133|gb|ABU45933.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073138|gb|ABU45937.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] gi|156073163|gb|ABU45957.1| NADH dehydrogenase subunit 4 [Eulemur fulvus albocollaris] Length = 459 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/356 (34%), Positives = 199/356 (55%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKEPWILKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYTQNYMGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNTLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|37620628|gb|AAQ95123.1| NADH dehydrogenase subunit 4 [Otaria byronia] Length = 459 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/348 (34%), Positives = 191/348 (54%), Gaps = 11/348 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFTATELIMFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS-IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A++ M T + ++ Y P S W +W+A +F +K+P+ Sbjct: 153 TLMGSLPLLVALLYMQNNMGTLNFLMAQYWAQTLPNS---WSNILLWLACMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S + A LS+ Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLSPLTS-FMAYPFMMLSMWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPLSYMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R H+R + GL +P A ++ ++ N+ LP T IGE LV+++ F Sbjct: 329 LANSNYERTHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELLVVITSFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SN +L ++++ALYSL++ G ++ +K RE Sbjct: 389 SNATIILMGVNIIITALYSLYMLITTQRG-KHTHHIKNIKPSFTRENT 435 >gi|310788890|gb|ADP24448.1| NADH dehydrogenase subunit 4 [Puntioplites falcifer] Length = 460 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYIMLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLLGELMIITTLFNWSPWTILLTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|281188319|gb|ADA55506.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188403|gb|ADA55584.1| NADH dehydrogenase subunit 4 [Pan paniscus] Length = 459 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 134/395 (33%), Positives = 219/395 (55%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPPSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + +I+ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTLGSLNIL- 177 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 356 AFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G + +K RE +++ PI +L++ Sbjct: 416 WG-PLTHHINNMKPSFTRENTLMFMHLSPILLLSL 449 >gi|55376103|ref|YP_138214.1| NADH dehydrogenase subunit 4 [Scomber scombrus] gi|55166601|dbj|BAD67387.1| NADH dehydrogenase subunit 4 [Scomber scombrus] Length = 460 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDLLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQIFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L YA + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYAAPLQLTSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLDPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSYWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|254674553|dbj|BAH86102.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] gi|254674581|dbj|BAH86128.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] Length = 452 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 216/381 (56%), Gaps = 19/381 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ LV+L+ +L P +++S + + ++ R ++I ++L S ++ AFL+ D+LLF Sbjct: 58 DFMSVALVILSVWLLPLMLIASQQHMAKDTGLYQRIFIICQVILTSALVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F+ YT GS+ +L +V ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFYTMVGSLPLLICLVGQ-YKMMGSLSLD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L M K + W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LILGGMYKGEYFTNLW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + ++ V+F L+L ++ + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGLMRISYA-WGASALLSGEVVFALALWGMVVMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI +G G GAM M++HGLVSS LF Y+R H+R++ G++ P Sbjct: 295 VGGIMTGTTWGYNGAMILMIAHGLVSSCLFSLANYWYERSHSRNLLGSRGMIILFPLMGA 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + ++ N+ LP T GE + +++V+ S + G VL+A YSL++ FG Sbjct: 355 GWFIASLMNLALPPTINLFGELVAMVAVYNWSMFSVIFMGVGAVLTAAYSLYM-----FG 409 Query: 435 VSKCEKV----QQLKDLSLRE 451 +S+ +V + L ++ RE Sbjct: 410 MSQWGEVLKNYKNLHVMTSRE 430 >gi|25057304|ref|NP_739629.1| NADH dehydrogenase subunit 4 [Aphredoderus sayanus] gi|25005491|dbj|BAC23160.1| NADH dehydrogenase subunit 4 [Aphredoderus sayanus] Length = 460 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 143/418 (34%), Positives = 227/418 (54%), Gaps = 22/418 (5%) Query: 19 VILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH 78 ++LF + L + + +LG STI + SL W F+ W F + Sbjct: 9 LMLFPTTLLTPPKLLWPTSLGHSTIIALISL-TW---------FKNTTETGW--SFLNPL 56 Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 LG D +S L+VL+ +L P IL+S + R Y++ L+ ++ AF + ++ Sbjct: 57 LGTDPLSAPLLVLSCWLLPLMILASQNHMSLEPPARQRTYIMLLTSLQLFLVLAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 ILFYIMFEATLIPTLMIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNCTGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQYYQPLNMLTIGDKMW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL+ + P I L+L ++ + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMMMLTPLSKEMAYPFII-LALWGVVMTGTICLRQTDLKALIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAAGILIQTPWGFTGALTLMIAHGLASSALFCLANTNYERTHSRTMILARGLQGLLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE ++I S+F S + GV+++A YSL+++ Sbjct: 355 LMATWWFIASLANLALPPLPNLMGEIMIITSLFNWSLWTLICTGAGVLITASYSLYMF 412 >gi|29788179|dbj|BAC75501.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] Length = 452 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/377 (33%), Positives = 212/377 (56%), Gaps = 11/377 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ LV+L+ +L P +++S + + ++ R ++I ++L S ++ AFL+ D+LLF Sbjct: 58 DFMSVALVILSVWLLPLMLIASQQHMAKDTGLYQRIFIICQVILTSALVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F+ YT GS+ +L +V ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFYTMVGSLPLLICLVGQ-YKMMGSLSLD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L K + W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LILGGTYKGEYFTNLW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + ++ V+F L+L ++ + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGLMRISYA-WGASALLSGEVVFALALWGMVVMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI +G G GAM M++HGLVSS LF Y+R H+R++ G++ P Sbjct: 295 VGGIMTGTTWGYNGAMILMIAHGLVSSCLFSLANYWYERSHSRNLLGSRGMIILFPLMGA 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + ++ N+ LP T GE + +++V+ S + G VL+A YSL+++ +G Sbjct: 355 GWFIASLMNLALPPTINLFGELVAMVAVYNWSMFSVIFMGVGAVLTAAYSLYMFGMTQWG 414 Query: 435 VSKCEKVQQLKDLSLRE 451 E + L ++ RE Sbjct: 415 -EVLENYKNLHVMTSRE 430 >gi|158605046|ref|YP_001527861.2| NADH dehydrogenase subunit 4 [Strongylocentrotus droebachiensis] Length = 462 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 142/435 (32%), Positives = 224/435 (51%), Gaps = 23/435 (5%) Query: 38 LGISTINFIF---SLFVWSVFDKGRSSFQ--MIEYYHWIDYFCSYH-----LGVDGISIL 87 +GI+T NF+ L+ ++F S ++ HW S+H L D IS Sbjct: 9 VGIATTNFLVPSNKLWASAIFQTALLSLLSLIVLNNHWTS---SWHNLSSILASDTISAP 65 Query: 88 LVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 L++L+ +L P +++S + R ++ +++ +I F SL++LLFYI FE Sbjct: 66 LIILSCWLAPIALIASKGHLNNTSDLGQRVFITMVIIITGALIVTFSSLELLLFYIAFET 125 Query: 144 SLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID---LYA 199 +LIP ++I WG ER A F YT FGS+ +L +++ + + SI + L+ Sbjct: 126 TLIPTLILITRWGAQMERFQAGLYFMFYTLFGSLPLLISLIAIYVSSSSLSIPNVELLWT 185 Query: 200 MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 + S+ W W +F IK+P++ FH WLP AHV+AP AGS+ LA I+LK+GGYG Sbjct: 186 TNGSVESLTMW-WALSIVAFLIKMPVYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGL 244 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +R + ++ Y + + + S++ + QTD+K LIAYSS+ HM V IF Sbjct: 245 MRLISLFSTISMNYLSLALIVFCTWGALITSIICVRQTDLKALIAYSSVGHMSIVAAAIF 304 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 S G+ GA+ M++HGLVSSALF +Y+R TR I GL +P + ++ Sbjct: 305 SETSWGMNGALMLMIAHGLVSSALFSLANTVYERSGTRTIAITRGLKLLLPLSTLWWLLM 364 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 AN+GLP + IGE L++ S+ S + + F V A+YSL +++ G Sbjct: 365 CAANLGLPPSPNLIGEILILSSLISWSVWLFPIVGFATVFGAIYSLMIFQLSQQGTPSAS 424 Query: 440 KVQQLKDLSLRERCM 454 + S RE + Sbjct: 425 IINVSSSFS-REHLL 438 >gi|12044377|gb|AAG47833.1|AF312390_3 NADH dehydrogenase subunit 4 [Cottus hypselurus] Length = 413 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 202/363 (55%), Gaps = 14/363 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NFYMATDPLSTPLLVLTCWLLPLMILASQNHTAYEPLNRQRMYLTLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSII-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ D +S + + W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSLLTIQYSDPVELSSYAHKLW---WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRMVVMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGFSGALVLMIAHGLASSALFCLANTSYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QMVLPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIILTGTGTLITASYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|25057415|ref|NP_739993.1| NADH dehydrogenase subunit 4 [Hypoptychus dybowskii] gi|25005967|dbj|BAC23589.1| NADH dehydrogenase subunit 4 [Hypoptychus dybowskii] Length = 460 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P I++S R Y+ L+ +I AF + + Sbjct: 56 YLATDSLSTPLLVLTCWLLPLMIIASQAHTAAEPCNRQRTYITLLTSLQIFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IILFYIMFEATLIPTLIIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSAGTL 175 Query: 193 SIIDL-YAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + Y+ F+ + W W + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTIPYSDPAHLISFADKLW-WASCILAFLVKMPLYGMHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL P I F +L ++ + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMVVILDPLTKDLSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V I GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVAAILIQTPWSFSGALILMIAHGLASSALFCLANTNYERTHSRTLVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + T+AN+GLP +GE ++I+S+F S VL G +++ YSL+++ Sbjct: 354 PLMCTWWFISTLANLGLPPLPNLMGELMIIVSLFSWSWWTLVLTGAGTLITVSYSLYMF 412 >gi|197311108|ref|YP_002154552.1| NADH dehydrogenase subunit 4 [Aplocheilus panchax] gi|197304298|dbj|BAG69255.1| NADH dehydrogenase subunit 4 [Aplocheilus panchax] Length = 460 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ + L+ +I AF + + Sbjct: 56 YMATDSLSTPLLVLTCWLLPLMILASQNHMFSQPCNRQRTYICLLISLQIFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG ER+ A F YT GS+ +L A++++ + Sbjct: 116 VIMFYIMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLAGSLPLLVALLLLQSSTGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S + L S P +S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SFLTLPHTSYIPLTSYSDKIW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R + L PL + P I L+L II S + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIMTVLTPLTKEMSYPFII-LALWGIIMTSSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTLLLARGLQVIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P V ++AN+ LP +GE ++I S+F S L G +L+A YSL+++ Sbjct: 354 PLMTTWWFVASLANLALPPLPNLMGELMIITSLFNWSRWTLCLTGLGTLLTAGYSLYMF 412 >gi|190349464|ref|YP_001974562.1| NADH dehydrogenase subunit 4 [Lutjanus russellii] gi|134270236|gb|ABO69275.1| NADH dehydrogenase subunit 4 [Lutjanus russellii] Length = 460 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 200/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 SPYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQIFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPPLVALLLLQNNTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQFSNPLQLTTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLVVLEPLTKELSYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLILTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|126215429|ref|YP_001054902.1| NADH dehydrogenase subunit 4 [Pseudolabrus sieboldi] gi|126143630|dbj|BAF47363.1| NADH dehydrogenase subunit 4 [Pseudolabrus sieboldi] Length = 460 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 201/361 (55%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++GVD +S L+VL+ +L P I++S + R Y+ + L+S +I AF + + Sbjct: 56 YMGVDPLSSPLLVLSCWLLPLMIIASQNHMSSEPVHRQRLYITLMISLQSFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 VIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNTTG 173 Query: 193 SIIDLYAMSKFPF-----SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+ L P + +W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSMLTLQYAKPLVYSSHADNFW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRILIILDPLTKELGYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R HTR + GL Sbjct: 292 VGHMGLVVGGILIQTPWGFAGALILMIAHGLTSSALFCLANTNYERTHTRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP + E +VI +F S L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMAELMVITGMFNWSWWTLALTGTGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|166851900|ref|YP_001661364.1| NADH dehydrogenase subunit 4 [Eulemur mongoz] gi|166788128|emb|CAP18032.1| NADH dehydrogenase subunit 4 [Eulemur mongoz] Length = 460 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/353 (34%), Positives = 202/353 (57%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + +E++ + Y+ + L+ ++ F + +++ F Sbjct: 59 DPLSSPLMILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLVMTFTATELIWF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + + P S M W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MKYYLQEMPNSWSNNMLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 +GI GA M++HGL SS LF Y+R+H+R + G+ +P A Sbjct: 298 VVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 358 WWLLASLTNLALPPSINLIGELFVVMASFSWSNITIILMGLNMLITALYSLYM 410 >gi|16519267|gb|AAL25159.1|AF224524_4 NADH dehydrogenase subunit 4 [Eulemur coronatus] gi|24817353|gb|AAN64712.1|AF224523_4 NADH dehydrogenase subunit 4 [Eulemur coronatus] gi|156073048|gb|ABU45865.1| NADH dehydrogenase subunit 4 [Eulemur coronatus] gi|209447642|gb|ACI47112.1| NADH dehydrogenase subunit 4 [Eulemur coronatus] Length = 459 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/356 (34%), Positives = 201/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLVLTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL P + L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPLTKHMSYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGVQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSLYM 410 >gi|158327675|emb|CAP12680.1| NADH dehydrogenase subunit 4 [Strongylocentrotus droebachiensis] Length = 463 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 142/435 (32%), Positives = 224/435 (51%), Gaps = 23/435 (5%) Query: 38 LGISTINFIF---SLFVWSVFDKGRSSFQ--MIEYYHWIDYFCSYH-----LGVDGISIL 87 +GI+T NF+ L+ ++F S ++ HW S+H L D IS Sbjct: 10 VGIATTNFLVPSNKLWASAIFQTALLSLLSLIVLNNHWTS---SWHNLSSILASDTISAP 66 Query: 88 LVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 L++L+ +L P +++S + R ++ +++ +I F SL++LLFYI FE Sbjct: 67 LIILSCWLAPIALIASKGHLNNTSDLGQRVFITMVIIITGALIVTFSSLELLLFYIAFET 126 Query: 144 SLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID---LYA 199 +LIP ++I WG ER A F YT FGS+ +L +++ + + SI + L+ Sbjct: 127 TLIPTLILITRWGAQMERFQAGLYFMFYTLFGSLPLLISLIAIYVSSSSLSIPNVELLWT 186 Query: 200 MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 + S+ W W +F IK+P++ FH WLP AHV+AP AGS+ LA I+LK+GGYG Sbjct: 187 TNGSVESLTMW-WALSIVAFLIKMPVYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGL 245 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +R + ++ Y + + + S++ + QTD+K LIAYSS+ HM V IF Sbjct: 246 MRLISLFSTISMNYLSLALIVFCTWGALITSIICVRQTDLKALIAYSSVGHMSIVAAAIF 305 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 S G+ GA+ M++HGLVSSALF +Y+R TR I GL +P + ++ Sbjct: 306 SETSWGMNGALMLMIAHGLVSSALFSLANTVYERSGTRTIAITRGLKLLLPLSTLWWLLM 365 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439 AN+GLP + IGE L++ S+ S + + F V A+YSL +++ G Sbjct: 366 CAANLGLPPSPNLIGEILILSSLISWSVWLFPIVGFATVFGAIYSLMIFQLSQQGTPSAS 425 Query: 440 KVQQLKDLSLRERCM 454 + S RE + Sbjct: 426 IINVSSSFS-REHLL 439 >gi|29570665|ref|NP_818887.1| NADH dehydrogenase subunit 4 [Phenacogrammus interruptus] gi|29501104|dbj|BAC67464.1| NADH dehydrogenase subunit 4 [Phenacogrammus interruptus] Length = 460 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 132/389 (33%), Positives = 216/389 (55%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + ++ VD +S L++LT +L P +++S I N + I+ L L+ +I AF + Sbjct: 54 NTYMAVDPLSAPLLILTCWLLPLMMIASQNHIGPEPMNRQRIFISLLTSLQMFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TELILFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQQNMG 173 Query: 191 TSSIIDLY----AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ L A+S + + W W++ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSLMILQHSQPALSS-SWGDKIW-WMSCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R ++ L P+ + P + L+L II + + QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGMMRMMIILMPITKEMAYPFMI-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V G+ + G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVSHMGLVASGVLTQTPWGFTGAIILMIAHGLTSSALFCLANTTYERTHSRTMVLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P ++AN+ LP +GE L+I ++F S ++ G +++A YSL+ Sbjct: 351 LIFPLTTTWWFFASLANLALPPLPNLMGELLIITTLFNWSPWTLIMTGIGTLITAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + + L RE ++ Sbjct: 411 LFLLTQRGPTP-HHIINLPPFHTREHLLL 438 >gi|21717316|ref|NP_659322.3|ND4_16493 NADH dehydrogenase subunit 4 [Manis tetradactyla] Length = 459 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/357 (35%), Positives = 204/357 (57%), Gaps = 14/357 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSI-QENFRE---YMIAFLVLESMVIGAFLSLDMLL 136 +D +S L+VLTT+L P +++S + EN ++ ++L++M++ F S +M++ Sbjct: 58 LDPLSAPLLVLTTWLLPLMLMASQSHLYNENLSRKKLFINLLIILQTMLVMTFSSSEMIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI E +L+P +II WG +ER+ A Y F YT GS+ +L VV+ + T + Sbjct: 118 FYILKETTLVPTLIIITRWGNQTERLNAGYYFLFYTMVGSLPLL---VVLIHTQNTMGTL 174 Query: 196 DLYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +L + + S+ W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 175 NLLLLQFWAKSMMNSWSSSLIWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + PL + A LSL +I S + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMLR-ITPLLEPTTTSMAYPFLILSLWGMIMTSSTCLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 294 MALVIAAIMIQTPWSYMGATALMIAHGLTSSMLFCLANTNYERIHSRTMMLARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++AN+ LP + IGE LV++S F SNT +L ++++A+YSL++ Sbjct: 354 LMAAWWLLASLANLALPPSINLIGELLVVVSTFSWSNTTIMLTGMNIIITAIYSLYM 410 >gi|156457723|gb|ABU66384.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|302375525|gb|ADL29903.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 200/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++ N+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLTNLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|16357314|ref|NP_443563.1| NADH dehydrogenase subunit 4 [Danacetichthys galathenus] gi|16267115|dbj|BAB70257.1| NADH dehydrogenase subunit 4 [Danacetichthys galathenus] Length = 460 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 205/367 (55%), Gaps = 22/367 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S + R Y+ +L +I AF + Sbjct: 54 NLYMAADPLSAPLLVLTCWLLPLAILASQNHMMNEPLNRQRTYISLLTLLTLFLILAFTA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP II WG ++R+ A F YT GS+ +L A++++ + Sbjct: 114 TELIMFYVMFEATLIPTLFIITRWGNQTQRLNAGTYFLFYTLAGSLPLLVALLLL--QND 171 Query: 191 TSSIIDLYAMSKFPFS-----IQY----WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 T + +M PFS I Y W W+ +F +K+P++ H WLP AHV+AP Sbjct: 172 TGGL----SMLTLPFSNTQQLISYADKAW-WLGCLMAFLVKMPLYGMHLWLPKAHVEAPI 226 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA ++LK+GGYG IR ++ L PL + P I F +L I+ S + + QTD+K Sbjct: 227 AGSMILAAVLLKLGGYGMIRVVVMLEPLTKELCYPFIVF-ALWGIVMTSSICLRQTDLKS 285 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS++HMG V GI G GA+ M++HG SSALF Y+R H+R + Sbjct: 286 LIAYSSVSHMGLVASGILIQTPWGFTGALTLMIAHGFTSSALFCLANTNYERTHSRTMIL 345 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GL +P A + ++AN+ LP +GE ++I S+F S + GV+L+A Sbjct: 346 ARGLQVLLPLMATWWFIASLANLALPPLPNLMGELMIISSLFGWSPLSLAITGLGVILTA 405 Query: 422 LYSLWLY 428 YSL+L+ Sbjct: 406 SYSLYLF 412 >gi|226453496|ref|YP_002791064.1| NADH dehydrogenase subunit 4 [Rattus exulans] gi|160688855|gb|ABX45267.1| NADH dehydrogenase subunit 4 [Rattus exulans] gi|160688869|gb|ABX45280.1| NADH dehydrogenase subunit 4 [Rattus exulans] Length = 459 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 138/393 (35%), Positives = 213/393 (54%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMMLASQNHMKKENSMHQKLYISMLISLQILLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + L P +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LSLTTQHLPPTWSNNILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRISMILDPLTKSLAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I GA M++HGL SS LF Y+R+H+R + GL P A Sbjct: 298 ITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP +GE ++MS F SN +L + +V++ +YS+++ G Sbjct: 358 WWLLASLANLALPPLINLMGELFIVMSTFSWSNPSIILMATNIVITGMYSMYMIITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + L+ RE + V P+ +LT+ Sbjct: 418 -KLTSHMNNLQPSHTRELTLMALHVIPLMLLTI 449 >gi|192293704|ref|YP_001994414.1| NADH dehydrogenase subunit 4 [Bathyprion danae] gi|190715110|dbj|BAG49354.1| NADH dehydrogenase subunit 4 [Bathyprion danae] Length = 460 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 199/373 (53%), Gaps = 12/373 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHISSEPASRQRVYISLLASLQMFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ EA+L+P +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYVMVEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P S+ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLTLQYSQPLSLLSWGDKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L PL + P I L+L II + + Q D+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMTIMLDPLTKEMAYPFIV-LALWGIIMTGFICLRQADLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M+SHGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGAIILMISHGLASSALFCLANTNYERTHSRTMVLARGLQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S L G +++A YSL L+ Sbjct: 353 FPLTAVWWLTANLANLALPPLPNLMGEIMIITTMFNWSPWTLALTGLGTLITAGYSLHLF 412 Query: 429 RKVVFGVSKCEKV 441 G + + Sbjct: 413 LLTQRGPTPAHMI 425 >gi|166065763|gb|ABY80078.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493866|gb|ACE02488.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 129/379 (34%), Positives = 208/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMVLARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SNT +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNTTIILMGINIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|171474196|gb|ACB47140.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474200|gb|ACB47143.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474204|gb|ACB47146.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474208|gb|ACB47149.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474216|gb|ACB47155.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474220|gb|ACB47158.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474224|gb|ACB47161.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474228|gb|ACB47164.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474232|gb|ACB47167.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474236|gb|ACB47170.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474240|gb|ACB47173.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474244|gb|ACB47176.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474248|gb|ACB47179.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474252|gb|ACB47182.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474256|gb|ACB47185.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474260|gb|ACB47188.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474264|gb|ACB47191.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474268|gb|ACB47194.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474272|gb|ACB47197.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474276|gb|ACB47200.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474280|gb|ACB47203.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474284|gb|ACB47206.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474288|gb|ACB47209.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474292|gb|ACB47212.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474296|gb|ACB47215.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] gi|171474300|gb|ACB47218.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] Length = 460 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 132/395 (33%), Positives = 216/395 (54%), Gaps = 21/395 (5%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKS-IQENF---REYMIAFLVLESMVIGAF 129 F +Y++ +D IS L+ L+ +LTP IL+S I E R + ++L+ ++ AF Sbjct: 52 FSNYYMSIDYISAPLLTLSCWLTPLMILASQNHLITEPISRKRTFTFIIILLQVSLVLAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE +LIP II WG ER+ A F YT GS+ +L A++ + + Sbjct: 112 SATELIMFFIMFETTLIPTLAIITRWGNQMERLNAGTYFLFYTLIGSLPLLIALLSLQNQ 171 Query: 189 KKTSSI----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T S ++ MS ++ W W A +F IK+P++ H WLP AHV+AP AGS Sbjct: 172 IGTLSTHMIQLNQPTMSNT-WAHTTW-WFALLTAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L PL+ P + L+L +I S + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGIIRIMPTLNPLSKTLPYPFMV-LALWGVIMTSSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 289 YSSVSHMGLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL---- 344 Query: 365 LVHNM----PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 L NM P ++ ++ ++ANM +P T +GE +I S+F SN ++ G +++ Sbjct: 345 LARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIASLFNWSNITILMTGSGTIIT 404 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 A Y+L++ +G + ++ + RE ++ Sbjct: 405 ATYTLYMLATTQWGGTP-SYIKTMPPTHTREHLLM 438 >gi|115494575|ref|YP_778704.1| NADH dehydrogenase subunit 4 [Zalophus californianus] gi|115344839|emb|CAJ56893.1| NADH dehydrogenase subunit 4 [Zalophus californianus] Length = 459 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 122/348 (35%), Positives = 190/348 (54%), Gaps = 11/348 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFTATELIMFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS-IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A++ M T + ++ Y P S W +W+A +F +K+P+ Sbjct: 153 TLVGSLPLLVALLYMQNNMGTLNFLMAQYWTQALPNS---WSNILLWLACMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S + A LS+ Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLNPLTS-FMAYPFMMLSMWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILVQTPLSYMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R H+R + GL +P A ++ ++ N+ LP T IGE LV+M+ F Sbjct: 329 LANSNYERTHSRIMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELLVVMASFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SN +L + ++ALYSL++ G ++ +K RE Sbjct: 389 SNATIILMGVNITITALYSLYMLITTQRG-KHTHHIKNIKPSFTRENT 435 >gi|5835914|ref|NP_008682.1|ND4_15076 NADH dehydrogenase subunit 4 [Salvelinus alpinus] gi|5257533|gb|AAD41394.1|AF154851_10 NADH dehydrogenase subunit 4 [Salvelinus alpinus] Length = 461 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 211/389 (54%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NLYLATDPLSTPLLVLTCWLLPLMILASQNHISPEPLNRQRTYISLLVSLQTFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQDDSG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ L P + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMFTLQYTK--PLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 291 SVGHMGLVAGGIMIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P V ++AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MVLPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSYWTLLLTGLGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L+ G + L+ RE ++ Sbjct: 411 LFLMTQRGPLPSHII-ALEPTHTREHLLI 438 >gi|21622585|emb|CAD13271.2| NADH dehydrogenase subunit 4 [Manis tetradactyla] Length = 474 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 128/357 (35%), Positives = 204/357 (57%), Gaps = 14/357 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSI-QENFRE---YMIAFLVLESMVIGAFLSLDMLL 136 +D +S L+VLTT+L P +++S + EN ++ ++L++M++ F S +M++ Sbjct: 58 LDPLSAPLLVLTTWLLPLMLMASQSHLYNENLSRKKLFINLLIILQTMLVMTFSSSEMIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI E +L+P +II WG +ER+ A Y F YT GS+ +L VV+ + T + Sbjct: 118 FYILKETTLVPTLIIITRWGNQTERLNAGYYFLFYTMVGSLPLL---VVLIHTQNTMGTL 174 Query: 196 DLYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +L + + S+ W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 175 NLLLLQFWAKSMMNSWSSSLIWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + PL + A LSL +I S + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMLR-ITPLLEPTTTSMAYPFLILSLWGMIMTSSTCLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 294 MALVIAAIMIQTPWSYMGATALMIAHGLTSSMLFCLANTNYERIHSRTMMLARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++AN+ LP + IGE LV++S F SNT +L ++++A+YSL++ Sbjct: 354 LMAAWWLLASLANLALPPSINLIGELLVVVSTFSWSNTTIMLTGMNIIITAIYSLYM 410 >gi|327492915|ref|YP_004347871.1| NADH dehydrogenase subunit 4 [Tetraodon mbu] gi|327392430|dbj|BAK09869.1| NADH dehydrogenase subunit 4 [Tetraodon mbu] Length = 460 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 201/365 (55%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L+VL+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLVLSCWLLPLMILASQNHTAHEPINRQRMYITLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 AATEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 S+ L + P S+ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NSNGSLSLLTLLHSTPPSLSTYADKIW-WAGCMLAFLVKMPLYGAHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L+ L PL + P I L+L II + M QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRILVTLEPLNKELSYPFII-LALWGIIMTGSICMRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVIGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P ++AN+ LP +GE ++I S+F S + G +++A Y Sbjct: 348 GLQTALPLMTAWWFTASLANLALPPLPNLMGELMIITSMFNWSWWTITMTGLGTLITAGY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|110432580|gb|ABG73884.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] gi|110432605|gb|ABG73904.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] gi|110432615|gb|ABG73912.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] Length = 459 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 128/366 (34%), Positives = 205/366 (56%), Gaps = 14/366 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLVLTMWLFPLTIVASQYHLTKEPWERKKHFLSTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSHI---QNSMGTLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + + L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPLTKSMAYPFLM-MCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERIHSRTMLLARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ +++N+ LP + +GE LV M+ F SNT +L ++++A YSL++ Sbjct: 355 MSTWWLLASLSNLALPPSINLMGELLVTMAAFSWSNTTIILTGLNMLITATYSLYMLTTT 414 Query: 432 VFGVSK 437 G S Sbjct: 415 QRGKSS 420 >gi|197311195|ref|YP_002154565.1| NADH dehydrogenase subunit 4 [Paretroplus maculatus] gi|197304565|dbj|BAG69494.1| NADH dehydrogenase subunit 4 [Paretroplus maculatus] Length = 460 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F + ++ D +S L+ LT +L P IL+S N + I L L+ +I AF Sbjct: 52 FLNPYIATDPVSTPLLALTCWLLPLMILASQNHTASEPVNRQRMFITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEVIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNT 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L+ P S + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLILHYTPFIPLSSTADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R + L PL + P I L+L +I + + Q D+K LIAY Sbjct: 231 VLAAVLLKLGGYGLMRMMPMLEPLTKELSYPFII-LALWGVIMTGSICLRQADLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI + G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILTQTSWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+ S +L G +++A YSL Sbjct: 350 QMALPLMTTWWFLSSLANLALPPLPNLMGELMIITSLLSWSWWTILLTGAGTLITACYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|317097181|ref|YP_004123320.1| NADH dehydrogenase subunit 4 [Rattus villosissimus] gi|290573421|gb|ADD46539.1| NADH dehydrogenase subunit 4 [Rattus villosissimus] Length = 459 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 136/395 (34%), Positives = 215/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P IL+S K + + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMILASQNHMKKETSTHQKLYISMLISLQILLIMTFSTTELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALLSIQNSMGTLNFLV 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +++ P S W MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 L-SLTTQPLS-STWSNSIMWLACMMAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRVSIILDPLTKSLAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 296 LVITAIMIQTPWSFMGATVLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMVFPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP +GE ++M+ F SN +L + ++++ +YS+++ Sbjct: 356 ATWWLLASLANLALPPLINLMGELFIVMATFSWSNPSIILTATNIIITGMYSMYMIITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 416 RG-KLTSHMNNLQPSHTRELTLMALHIIPLMLLTI 449 >gi|47588100|gb|AAT35908.1| NADH dehydrogenase subunit 4 [Eulemur fulvus rufus] Length = 459 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/356 (34%), Positives = 202/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFETTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNSILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|7381071|gb|AAF61387.1|AF133701_10 NADH dehydrogenase subunit 4 [Salmo salar] Length = 460 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P +L+S I R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMVLASQNHISPEPLNRQRTYISLLVSLQMFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDSGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+ L M + + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMFTLQYTQPMHLLTWGDKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVG 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ + Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQMIV 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P V ++AN+ LP +GE ++I S+F S+ +L G +++A YSL+L+ Sbjct: 354 PLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSHWTLLLTGLGTLITASYSLYLF 412 >gi|11386128|ref|NP_068791.1| NADH dehydrogenase subunit 4 [Pteropus dasymallus] gi|11231076|dbj|BAB18181.1| NADH dehydrogenase subunit 4 [Pteropus dasymallus] Length = 459 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/363 (34%), Positives = 196/363 (53%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + Y+ + L+ +I F + +++ F Sbjct: 59 DSLSTPLLMLTMWLLPLMIIASQFHLTKETYTRKKLYITMLISLQIFLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ M + T ++ Sbjct: 119 YILFEATLVPTLIIITRWGAQTERLNAGLYFLFYTLVGSLPLLVALIYM---QNTMGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 I-------LLTQYWSEPLTNSWGNSFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L P + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITTVLNP-TTNFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP + IGE V+MS F S+ +L +V++ALYS Sbjct: 348 LQTVLPLMAAWWLLASLTNLALPPSINLIGELFVVMSTFSWSSMSIILMGTNIVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|197311124|ref|YP_002154474.1| NADH dehydrogenase subunit 4 [Paratilapia polleni] gi|197304621|dbj|BAG69546.1| NADH dehydrogenase subunit 4 [Paratilapia polleni] Length = 460 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 201/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + ++ D +S L+ LT +L P I++S + R Y+ L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLTLTCWLLPLMIIASQNHMTSEPIARQRLYITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A+++ Sbjct: 112 SATELIMFYVMFEATLIPTLVIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLAQNN 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L ++ F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 LGTLSLLTLQYTPSIQLSTFADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA I+LK+GGYG +R + L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAILLKLGGYGMMRVMTMLEPLTKELSYPFIIF-ALWGLIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P ++AN+ LP +GE ++I S+F S +L G +++A YSL Sbjct: 350 QMILPLTTAWWFTASLANLALPPLPNLMGELMIITSLFNWSWWTIMLTGAGTLITASYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|12484289|gb|AAG54064.1|AF224611_4 NADH dehydrogenase subunit 4 [Propithecus coquereli] gi|12484294|gb|AAG54068.1|AF224612_4 NADH dehydrogenase subunit 4 [Propithecus coquereli] gi|12484299|gb|AAG54072.1|AF224613_4 NADH dehydrogenase subunit 4 [Propithecus coquereli] Length = 459 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 202/359 (56%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S +++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLLILTMWLLPLMIMASQYHLKKEPWLRKKSYLSMLISLQMFLVMTFTANELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHL---QNSMGSLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L M+ + P S W +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA Sbjct: 176 LLTMNFWLKELPNS---WSSNLLWMACIMAFMVKMPLYGFHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITIILDPTTKAMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPSINLIGELFVMMASFSWSNISIILMGLNMLITALYSLYM 410 >gi|37620616|gb|AAQ95117.1| NADH dehydrogenase subunit 4 [Erignathus barbatus] Length = 459 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/380 (33%), Positives = 204/380 (53%), Gaps = 9/380 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S + + + ++ ++L+ +I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQHHLSKESPTRKKLFITMLILLQLFLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T + Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALLFVQNNMGTLNFL 177 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 +I L+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 178 MIQLWTQPMSNSWSNILLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L PL S + A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITTLLNPLTS-FMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 297 VIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQVLLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 357 AWWLLASLTNLALPPSINLIGELFVVMASFSWSNITIILMGANIIITALYSLYMLITTQR 416 Query: 434 GVSKCEKVQQLKDLSLRERC 453 G ++ +K RE Sbjct: 417 G-KYTHHIKNIKPSFTRENA 435 >gi|57544855|ref|NP_007104.2|ND4_10470 NADH dehydrogenase subunit 4 [Didelphis virginiana] Length = 459 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 192/341 (56%), Gaps = 8/341 (2%) Query: 94 FLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 +L P I++S + + R+ Y+ ++L+S +I AF S ++++FYI FE +LIP Sbjct: 71 WLLPLMIMASQNHLNKESLMRKKLYLTMMVILQSSLIIAFTSSELMMFYILFETTLIPTL 130 Query: 150 VIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII-DLYAMSKFPFSI 207 +II WG +ER+ A F YT GS+ +L A++ M T I+ + +++ +++ Sbjct: 131 IIITRWGNQNERLNAGIYFLFYTLVGSLPLLVALLTMNKNLGTLHILMNSILINQLNYTL 190 Query: 208 -QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG +R L Sbjct: 191 SNSTLWYACMTAFMIKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIMRISLFT 250 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 P+ P I LS+ +I S + M QTD+K LIAYSS++HM V I + Sbjct: 251 EPMTMHLLYPFII-LSMWGMIMTSSICMRQTDLKSLIAYSSVSHMALVIIAALIQSTTSF 309 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 GA M++HGL SS LF Y+R+H+R + GL +P + ++AN+ L Sbjct: 310 MGATILMVAHGLTSSMLFCLANTNYERIHSRTMILARGLQLILPLMTTWWLTASLANLAL 369 Query: 387 PGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P T +GE ++I + F SN +L V++ALYSL++ Sbjct: 370 PPTINLLGELMIITASFSWSNFSILLLGLNTVITALYSLYM 410 >gi|46917253|dbj|BAD18038.1| NADH dehydrogenase subunits 4 [Secutor indicius] Length = 460 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 199/364 (54%), Gaps = 10/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + N R Y+ L+ ++I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQHHMSSNPYVRQRMYITLLSSLQVLLIMAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++ + T S Sbjct: 117 MMFYITFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLMSSLPLLVALLALQNTTGTLS 176 Query: 194 IIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L P F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQFTPHLPLQSFTDKLW-WTGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL Q P I L+L +I + + Q+D+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIMPLLEPLTKQMSYPFII-LALWGMIMTGSICLRQSDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G GA+ M++HGL SSALF Y+R H R + GL P Sbjct: 295 MGLVVTGALLQTPWAFSGALILMIAHGLTSSALFCLANTNYERTHNRTLLLTRGLQTAFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A +F++AN+ LP +GE +VI S+F S +L G +++A YSL+++ Sbjct: 355 LMATWWFLFSLANLALPPLPNLMGELMVITSLFNWSPWTLMLTGAGTLITAGYSLYMFLT 414 Query: 431 VVFG 434 G Sbjct: 415 TQRG 418 >gi|221145641|ref|YP_002519920.1| NADH dehydrogenase subunit 4 [Amanses scopas] gi|219806959|dbj|BAH10326.1| NADH dehydrogenase subunit 4 [Amanses scopas] Length = 460 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 202/370 (54%), Gaps = 10/370 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S + EN + I+ L L+ +I AF + + Sbjct: 56 YLATDALSTPLLVLSCWLLPLMILASQSHMAPEPENRQRLYISLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 VMMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALSLLYASTGTL 175 Query: 193 SIIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILQYSGPLHLSNLADKFW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLTVLDPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQTIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A + +AN+ LP +GE ++I S+ S L G +++A YSL+++ Sbjct: 354 PLMATWWFISALANLALPPLPNLMGELMIITSLLNWSWWTIALTGLGTLITAGYSLYMFL 413 Query: 430 KVVFGVSKCE 439 G + Sbjct: 414 MTQRGKTPAH 423 >gi|157367436|gb|ABV45571.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] Length = 455 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 201/383 (52%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++LT +L P +++S + + Y+ ++L+ +I F + D++L Sbjct: 58 LDSLSTPLLILTIWLLPLMLIASQSHLSSGSTFQKKSYITTIILLQVSLIMTFAATDLIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FE +LIP +II WG ER+ A F YT GS+ +L ++++ + T + Sbjct: 118 LYIMFETTLIPTMIIITRWGNQLERLNAGSYFLFYTLVGSLPLLVTLMLI---QNTLGSL 174 Query: 196 DLYAMSKFPFSIQ-YW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +L + SI W +W+ +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 NLMMLPYLAKSINNLWSTNMLWLTCIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL + + P + LSL ++ S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMLRITILLDPLTTHMYYPFLM-LSLXGMVMTSSICLRQTDMKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V I I GA+ M++HGL SS LF Y+R+H+R + GL +P Sbjct: 294 MALVIIAIMLQTPWSFMGALALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++ NM P T IGE L+I + F SN V+++ +Y+L + Sbjct: 354 LMATWWLLASLINMAPPPTINLIGELLIITTSFSWSNLTIFPMGLNVLITTMYTLHMMTT 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G + +K RE Sbjct: 414 TQRG-KTSHHAKSIKPSFTRENT 435 >gi|126215511|ref|YP_001054759.1| NADH dehydrogenase subunit 4 [Anomalurus sp. GP-2005] gi|118140637|emb|CAJ43821.1| NADH dehydrogenase subunit 4 [Anomalurus sp. GP-2005] Length = 459 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/362 (34%), Positives = 201/362 (55%), Gaps = 24/362 (6%) Query: 82 DGISILLVVLTTFLTPFCILSSWK--SIQENFRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S S + + R+ Y+ ++L++ +I F + ++ LF Sbjct: 59 DHLSTPLLMLTTWLLPLMIMASQNHLSKESSIRKKLYITMLILLQAFLIMTFSATELTLF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLIALTYL--------YNS 170 Query: 197 LYAMSKFPFSIQY------W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 LY+++ F QY W +W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 LYSLNFLLFFYQYKLTYLSWSHSMLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++L +GGYG +R L L P+ P I LSL ++ S + + QTD+K LIAYS Sbjct: 231 LAAVLLNLGGYGMMRISLILDPMTESMSYPFIL-LSLWGMVMTSAICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + I GA M++HGL SS LF Y+R H+R + GL Sbjct: 290 SVSHMALVIVAIMIHTPLSYMGAPALMIAHGLTSSMLFCLANSTYERTHSRTMILARGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +++N+ LP + +GE LV+++ F S +L + ++ALY+L+ Sbjct: 350 TMLPLMASWWAMASLSNLALPPSINLMGELLVMLASFSWSKPTIILTGLNMTITALYTLY 409 Query: 427 LY 428 ++ Sbjct: 410 MF 411 >gi|171474212|gb|ACB47152.1| NADH dehydrogenase subunit 4 [Malaclemys terrapin] Length = 460 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 132/395 (33%), Positives = 216/395 (54%), Gaps = 21/395 (5%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKS-IQENF---REYMIAFLVLESMVIGAF 129 F +Y++ +D IS L+ L+ +LTP IL+S I E R + ++L+ ++ AF Sbjct: 52 FSNYYMSIDYISAPLLTLSCWLTPLMILASQNHLITEPISRKRTFTFIIILLQVSLVLAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE +LIP II WG ER+ A F YT GS+ +L A++ + + Sbjct: 112 SATELIMFFIMFETTLIPTLAIITRWGNQMERLNAGTYFLFYTLIGSLPLLIALLSLQNQ 171 Query: 189 KKTSSI----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T S ++ MS ++ W W A +F IK+P++ H WLP AHV+AP AGS Sbjct: 172 IGTLSTHMIQLNQPTMSNT-WAHTTW-WFALLTAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L PL+ P + L+L +I S + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGIIRIMPTLNPLSKTLPYPFMV-LALWGVIMTSSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 289 YSSVSHMGLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL---- 344 Query: 365 LVHNM----PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 L NM P ++ ++ ++ANM +P T +GE +I S+F SN ++ G +++ Sbjct: 345 LARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIASLFNWSNITILMTGSGTIIT 404 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 A Y+L++ +G + ++ + RE ++ Sbjct: 405 ATYTLYMLASTQWGGTP-SYIKTMPPTHTREHLLM 438 >gi|88061940|gb|ABD38948.1| NADH dehydrogenase subunit 4 [Cynoscion arenarius] Length = 460 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 203/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAF 129 F + ++ D +S L+VLT +L P IL+S + QE R Y+ L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLVLTCWLLPLMILASQNHTAQEPINRQRMYITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEVIMFYVMFEATLIPTLFLITRWGKQAERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSK---FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L + F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQFSNPALLTTFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILPMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|730205|sp|P41308|NU4M_DIDMA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|599731|emb|CAA82686.1| NADH dehydrogenase subunit 4 [Didelphis virginiana] Length = 474 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 192/341 (56%), Gaps = 8/341 (2%) Query: 94 FLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 +L P I++S + + R+ Y+ ++L+S +I AF S ++++FYI FE +LIP Sbjct: 71 WLLPLMIMASQNHLNKESLMRKKLYLTMMVILQSSLIIAFTSSELMMFYILFETTLIPTL 130 Query: 150 VIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII-DLYAMSKFPFSI 207 +II WG +ER+ A F YT GS+ +L A++ M T I+ + +++ +++ Sbjct: 131 IIITRWGNQNERLNAGIYFLFYTLVGSLPLLVALLTMNKNLGTLHILMNSILINQLNYTL 190 Query: 208 -QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG +R L Sbjct: 191 SNSTLWYACMTAFMIKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIMRISLFT 250 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 P+ P I LS+ +I S + M QTD+K LIAYSS++HM V I + Sbjct: 251 EPMTMHLLYPFII-LSMWGMIMTSSICMRQTDLKSLIAYSSVSHMALVIIAALIQSTTSF 309 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 GA M++HGL SS LF Y+R+H+R + GL +P + ++AN+ L Sbjct: 310 MGATILMVAHGLTSSMLFCLANTNYERIHSRTMILARGLQLILPLMTTWWLTASLANLAL 369 Query: 387 PGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P T +GE ++I + F SN +L V++ALYSL++ Sbjct: 370 PPTINLLGELMIITASFSWSNFSILLLGLNTVITALYSLYM 410 >gi|24817466|gb|AAN64792.1|AF224585_4 NADH dehydrogenase subunit 4 [Varecia variegata variegata] Length = 459 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 206/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P IL+S + +E++ + Y+ + L+ +++ F + +++LF Sbjct: 59 DPLSSPLMMLTMWLLPLMILASQHHLAKESWTLKKSYLSMLIFLQMLLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSMPLLVALI---YVQNYSGSLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L M+ + P S +W+A +F IK+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 LLMMNLCFQELPNSWSNNLLWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L L +++ A F L L +I AS + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITVILDSL-TKFMAYPFFMLCLWGMIMASSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGVQAFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 + ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MSTWWLLASLTNLALPPSINLIGELFVTMTSFSWSNITIILMGLNMLITALYSLYM 410 >gi|149193536|gb|ABR21235.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] Length = 452 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/367 (34%), Positives = 201/367 (54%), Gaps = 12/367 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLSLDMLL 136 +D I+ L +L+ +L P IL++ + E R ++ +L++ ++ F + D+++ Sbjct: 59 LDPITTPLAILSAWLLPLMILANQNITASEPIGRKRMFLTTCTMLQTTLLLTFTTTDLIM 118 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FY FE +L+P ++I WG +ER+ A F YT GS+ +L A++ + ++I Sbjct: 119 FYALFETTLVPTLILITRWGAQTERLNAGTYFIFYTLTGSLPLLVALLHIH-STNNHTLI 177 Query: 196 DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 + M + S MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+G Sbjct: 178 PILTMHQSSASPTNLMWLACMTAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 237 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 GYG IR L L P P I L+L +I SL+ + QTD+K +IAYSS++HMG VT Sbjct: 238 GYGIIRLTLVLTPTTQTMHFPFI-VLALWGMIMTSLICLRQTDLKSIIAYSSVSHMGLVT 296 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 + GAM M++HGL SS LF Y+R HTR + GL +P Sbjct: 297 AASLIQTPWSIHGAMLLMIAHGLTSSMLFCLANTNYERTHTRTLILVRGLQLALPLMTTW 356 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 ++ + NM LP T +GE ++I ++F + T VL +++A+YSL +F Sbjct: 357 WLLSNLMNMALPPTINLLGELMIITTLFNWNMTTIVLTGSATLITAMYSL-----HIFLT 411 Query: 436 SKCEKVQ 442 ++ K+Q Sbjct: 412 TQQNKLQ 418 >gi|145567097|gb|ABP81899.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 130/394 (32%), Positives = 211/394 (53%), Gaps = 17/394 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P I++S + + + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLVLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLIFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + +K S Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QKSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP IGE VIM+ F SN ++ F ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNMLITALYSLYMLTMTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLT 462 G + +K RE + + P+ +LT Sbjct: 416 RG-KFTYHIHNIKPSYTRENTLMSMHMLPLIMLT 448 >gi|5835634|ref|NP_008454.1|ND4_14000 NADH dehydrogenase subunit 4 [Salmo salar] gi|6647639|sp|Q9ZZM4|NU4M_SALSA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|3776544|gb|AAD04742.1| NADH dehydrogenase subunit 4 [Salmo salar] Length = 460 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P +L+S I R Y+ + L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMVLASQNHISPEPLNRQRTYISLLVSLQMFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDSGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+ L M + + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMFTLQYTQPMHLLTWGNKLW-WAACLLAFLVKMPVYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L II + + QTD+K LIAYSS+ Sbjct: 235 VLLKLGGYGMMRMMVMLDPLTKELAYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSSVG 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ + Sbjct: 294 HMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGMQMIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P V ++AN+ LP +GE ++I S+F S+ +L G +++A YSL+L+ Sbjct: 354 PLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSHWTLLLTGLGTLITASYSLYLF 412 >gi|194277539|ref|YP_002004590.1| NADH dehydrogenase subunit 4 [Propithecus coquereli] gi|194247752|dbj|BAG55330.1| NADH dehydrogenase subunit 4 [Propithecus verreauxi coquereli] Length = 460 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 202/359 (56%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S +++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLLILTMWLLPLMIMASQYHLKKEPWLRKKSYLSMLISLQMFLVMTFTANELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHL---QNSMGSLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L M+ + P S W +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA Sbjct: 176 LLTMNFWLKELPNS---WSSNLLWMACIMAFMVKMPLYGFHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITIILDPTTKAMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPSINLIGELFVMMASFSWSNISIILMGLNMLITALYSLYM 410 >gi|327492551|ref|YP_004347453.1| NADH dehydrogenase subunit 4 [Arothron hispidus] gi|327392528|dbj|BAK09960.1| NADH dehydrogenase subunit 4 [Arothron hispidus] Length = 460 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 204/365 (55%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F + +L D +S L+VL+ +L P IL+S N + I+ L L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLVLSCWLLPLMILASQNHTTHEPINRQRMYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 AATEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 S+ L + P ++ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NSNGSLSLLTLLHTAPPQLSTYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRILVALEPLTKELSYPFII-LALWGVIMTGSICMRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVVGGILIQTPWGFTGALVLMIAHGLTSSALFCLANTNYERTHSRTMLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + ++AN+ LP +GE ++I S+F S L G +++A Y Sbjct: 348 GLQMALPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIALTGLGTLITAGY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|238800167|gb|ACR55956.1| NADH dehydrogenase subunit 4 [Rhinophis philippinus] Length = 451 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 205/375 (54%), Gaps = 11/375 (2%) Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMI 116 S ++ ++ + +L +D IS L+ L+ +L P IL+S + + R ++ Sbjct: 38 SLSFLKQDSYLKPLSNLYLNLDPISAPLLALSYWLLPLTILASQHIMNQEPSQRQRTFLA 97 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGS 175 ++L++++ F + ++ L YI FEA+L+P ++I WG +ER+ A F +YT S Sbjct: 98 TMVLLQTLISLTFSTSNLTLMYIMFEATLLPTLIVITRWGQQAERLTAGTYFMMYTLTTS 157 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMS-KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLP 233 + +L AI+ M TS+ L+ MS K S I +W+A +F K+P++ H WLP Sbjct: 158 MPLLMAILFM---NNTSNTPTLFFMSTKLTSSWINLMLWLACLAAFLAKMPLYGLHLWLP 214 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 AHV+AP AGS+ LA I+LK+GGYG IR + + + + F P + L+L I A+L Sbjct: 215 KAHVEAPIAGSMVLAAILLKLGGYGMIRMMQIMPTMKTDTFMPFLI-LALWGAILANLTC 273 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 + QTD+K LIAYSS++HMG V + GAM M++HG SS LF + Y+R Sbjct: 274 LQQTDLKSLIAYSSVSHMGLVIAATMIQTSWSLAGAMTLMIAHGFTSSMLFCLANITYER 333 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 HTR + G + +P V + + N+ +P + F GE L++ S+F ++ Sbjct: 334 THTRILMLTRGFHNILPLLTVWWLTANLVNIAIPPSLNFTGELLILSSLFNWCPMTIIIM 393 Query: 414 SFGVVLSALYSLWLY 428 ++++A YSL +Y Sbjct: 394 GMSMLITATYSLHMY 408 >gi|21622581|emb|CAD13430.2| NADH dehydrogenase subunit 4 [Lemur catta] Length = 467 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 202/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S LVVLT +L P I++S +++ ++ I+ L+ L+ +I F + +++LF Sbjct: 59 DSLSSPLVVLTMWLLPLMIMASQHHLKKEPWTLKKLYISMLIFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHI---QNYLGSLN 175 Query: 197 LYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + MS F W +W+A +F +K+P++ H WLP AHV+AP AGS+ L ++ Sbjct: 176 MLTMSFCFQELSNSWSSNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLPPVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQTILPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSLYMLTTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|290573379|gb|ADD46500.1| NADH dehydrogenase subunit 4 [Rattus leucopus] Length = 459 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 136/393 (34%), Positives = 213/393 (54%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P IL+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMILASQNHMKKENLLHQKLYISMLISLQILLIMTFSTTELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + L P MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LSLTTQPLSPTWSNNIMWLACIMAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRISIILDPLTKSLAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I GA M++HGL SS LF Y+R+H+R + GL P A Sbjct: 298 ITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP +GE ++M+ F S+ +L + +V++ +YS+++ G Sbjct: 358 WWLLASLANLALPPLINLMGELFIVMASFSWSSPSIILTATNIVITGMYSMYMIITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + L+ RE + + P+ +LT+ Sbjct: 418 -KLTNHMNNLQPSHTRELTLMTLHIIPLMLLTI 449 >gi|47587831|gb|AAT35868.1| NADH dehydrogenase subunit 4 [Hapalemur griseus griseus] gi|47587858|gb|AAT35872.1| NADH dehydrogenase subunit 4 [Hapalemur griseus griseus] Length = 459 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 201/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + + + Y+ + L+ ++I F + +++ F Sbjct: 59 DSLSSPLVILTMWLLPLMIMASQHHLTKEPWTLKKLYLSMLISLQMLLIMTFTATELIYF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALIYI---QNYLGSLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L MS + P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 LSTMSLCFQELPNSWSNNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++ M Sbjct: 236 LKLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSPM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + ++ N+ LP + IGE LVIM+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLFASLTNLALPPSINLIGELLVIMASFSWSNITIILMGLNMLITALYSLYMLTTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|254674637|dbj|BAH86180.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] Length = 452 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 212/377 (56%), Gaps = 11/377 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ LV+L+ +L P +++S + + ++ R ++I ++L S ++ AFL+ D+LLF Sbjct: 58 DFMSVALVILSVWLLPLMLIASQQHMAKDTGLYQRIFIICQVILTSALVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F+ YT GS+ +L +V ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFYTMVGSLPLLICLVGQ-YKMMGSLSLD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L K + W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LILGGTYKGEYFTNLW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + ++ VIF L+L ++ + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGLMRISYA-WGASALLSGEVIFALALWGMVVMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI +G G GAM M++HGLVSS LF Y+R H+R++ G++ P Sbjct: 295 VGGIMTGTTWGYNGAMILMIAHGLVSSCLFSLANYWYERSHSRNLLGSRGMIILFPLMGA 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + ++ N+ LP T GE + +++V+ S + G VL+A YSL+++ +G Sbjct: 355 GWFIASLMNLALPPTINLFGELVAMVAVYNWSMFSVIFMGVGAVLTAAYSLYMFGMSQWG 414 Query: 435 VSKCEKVQQLKDLSLRE 451 E + L ++ RE Sbjct: 415 -EVLENYKNLHVMTSRE 430 >gi|284468530|gb|ADB90324.1| NADH dehydrogenase subunit 4 [Sebastiscus marmoratus] Length = 476 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 201/358 (56%), Gaps = 11/358 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQSHTALEPINRQRTYISLLTSLQVFLIMAFGATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + + S Sbjct: 117 LMFYVMFEATLIPTLIIITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLLLQKDTGSLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ + + P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTIQYTNSSPLSSYADKLW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P I L+L +I ++ TD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMAMLEPLTKELSYPFII-LALWGVIMTGPLT-PPTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+RLH+R + GL +P Sbjct: 294 MGLVVGGILIQTPWGFAGAVILMIAHGLTSSALFCLANTNYERLHSRTMLLARGLQMVLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE L+I S+F S +L G +++A YSL+++ Sbjct: 354 LMATWWFIASLANLALPPLPNLMGELLIITSLFGWSWWTLILTGAGTLITASYSLYMF 411 >gi|256985332|ref|YP_003162768.1| NADH dehydrogenase subunit 4 [Psetta maxima] gi|166065511|gb|ABY79844.1| NADH dehydrogenase subunit 4 [Scophthalmus maximus] Length = 460 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 207/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+ LT +L P +L+S ++ E R Y++ + L+ +I AF + + Sbjct: 56 YMATDPLSTPLLTLTCWLLPLMLLASQNHTMAEPIARQRVYIMLLITLQIFLILAFSASE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 LIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLLQNSSGTL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L P ++ + W W++ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITLSFTDPLPLLSYADKLW-WVSCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R + L PL + P + F +L +I S + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMPLLAPLTKELSYPFVIF-ALWGVIMTSSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SS LF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFSGALILMIAHGLTSSVLFCLANTSYERTHSRTMALARGLQTIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMATWWFISSLANLALPPLPNLMGELMIITSLFNWSWGTLLLTGLGTLITAGYSLYMF 412 >gi|110432720|gb|ABG73996.1| NADH dehydrogenase subunit 4 [Lepilemur ruficaudatus] Length = 459 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 130/403 (32%), Positives = 207/403 (51%), Gaps = 33/403 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ L +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLAMWLFPLTIMASQYHLAKEPWERKKHFLFTLISLQLFLILTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWTQELANSWSSDLMWVACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITIILDPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + +GE + M+ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLVGELFITMATFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 L++ G RE + V+P+ +LT+ Sbjct: 408 LYMLTMTQRG-EPLYHAHNFNPSLTRENALMSMHVFPLLLLTL 449 >gi|84494885|ref|ZP_00994004.1| putative NADH dehydrogenase I chain M [Janibacter sp. HTCC2649] gi|84384378|gb|EAQ00258.1| putative NADH dehydrogenase I chain M [Janibacter sp. HTCC2649] Length = 497 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 143/422 (33%), Positives = 226/422 (53%), Gaps = 23/422 (5%) Query: 70 WI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI-------QENFREYMIAFLVL 121 WI D +H VDGIS L+VLT + + SW + Y+ A L++ Sbjct: 58 WIPDLGVRWHFEVDGISAPLIVLTAVIGVLVVAHSWAEQPWADSPSSGSAATYLGALLLV 117 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG----GSERIYAAYKFFLYTFFGSIF 177 E+ + AF + D +LF+I FE L+PM+V+I +G ++R A+ +F LYT GS Sbjct: 118 ETGALAAFSARDAVLFFIAFEIVLVPMWVLISRYGDPHSAAKRADASARFILYTAIGSTL 177 Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF--AIKIPMFPFHTWLPNA 235 ML I+++ + +T+ L A + Q M IA + A+K+P+FP HTWLP A Sbjct: 178 MLVGILLLVTKARTADFAALPAAAASLSPGQQ-MLIAVLLTLGLAVKVPVFPLHTWLPAA 236 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H APTAGSV LA ++LK+G YG +R L P APV+ +I I++ L+ +V Sbjct: 237 HTTAPTAGSVLLAAVLLKLGTYGLVRLPLASVPDGFTRIAPVLAIAGVIGILWGGLICLV 296 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 + D+K+LIA+SS+AHMG+V +G+ SG ++G++ A+ ++HG++S+ LF VG + R Sbjct: 297 ERDLKRLIAFSSVAHMGFVVLGLASGTETGLQAALIGNIAHGVISALLFVIVGGLKHRWG 356 Query: 356 TRDIFAYGGLVHNM-PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 + D+ + + PR +++ A +GLPG +GF GEF +++ + VL + Sbjct: 357 SVDLAVLRPALREVSPRLGFGLILGLAAGLGLPGLAGFWGEFTALIAAWNPIQHTGVLRT 416 Query: 415 ------FGVVLSALYSLWLYRKVVFGVS-KCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 G L+A YSL + R V G + + D E ++ +AV V G+ Sbjct: 417 CAVIAAVGAALAAAYSLRVARIVWVGDEVAADAPDRAPDARGVELGVISALAVGVVALGV 476 Query: 468 YP 469 P Sbjct: 477 AP 478 >gi|256427205|ref|YP_003126975.1| NADH dehydrogenase subunit 4 [Scorpis lineolata] gi|256353357|dbj|BAH97866.1| NADH dehydrogenase subunit 4 [Scorpis lineolata] Length = 460 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 202/365 (55%), Gaps = 10/365 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQSHTALEPINRQRMYITLLTSLQAFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSNPLLLTTYADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLEPLTEELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLLLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + ++AN+ LP +GE ++I S+ S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLLNWSWWTLLLTGPGTLIAAGYSLYMFL 413 Query: 430 KVVFG 434 G Sbjct: 414 ATQRG 418 >gi|242624254|ref|YP_003002173.1| NADH dehydrogenase subunit 4 [Hemidactylus frenatus] gi|239997854|gb|ACS37292.1| NADH dehydrogenase subunit 4 [Hemidactylus frenatus] Length = 455 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/356 (34%), Positives = 198/356 (55%), Gaps = 13/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D I+ L++L+ + P +L+S ++ + R ++ VL++ ++ AF + ++++F Sbjct: 60 DPIATPLIILSAWTLPLMVLASQHHMKSEPAQRKRLFLATCAVLQTTLLLAFTAPNLMMF 119 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE +L+P +I WG ++R+ A F YT S+ +L AI+V+ + S+++ Sbjct: 120 YIAFETTLLPTLALITRWGSQTDRLKAGNYFLFYTMASSLPLLVAILVLQAQYGHSNMLT 179 Query: 197 L----YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L + P +I +W+A +F +K+PM+ H WLP AHV+AP AGS+ LA ++L Sbjct: 180 LTMSHLTQTSKPPTI---LWLACMTAFLVKMPMYGTHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L P + P I LSL +I SL+ + Q D+K +IAYSS++HMG Sbjct: 237 KLGGYGILRITPILSPTTQTVYYPFII-LSLWGMIMTSLICLRQADLKAIIAYSSVSHMG 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V V GAM M++HGL SS LF Y+R HTR + GL MP Sbjct: 296 LVISAAVIQTPWSVTGAMLLMIAHGLTSSMLFCLANTNYERAHTRTLMLTRGLQMLMPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A ++ ++ N+ +P T +GE +I S F S T +L +L+A YSL++Y Sbjct: 356 ATWWLLASLTNLAMPPTPNLLGELFIISSTFNWSTTTIILTGATTLLTATYSLYVY 411 >gi|156530266|gb|ABU75234.1| NADH dehydrogenase subunit 4 [Bombina bombina] Length = 459 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 128/392 (32%), Positives = 210/392 (53%), Gaps = 13/392 (3%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGA 128 +F ++ L VD +S L++L+ +L P I++S + R Y+ L+ +I A Sbjct: 50 HFTTHILSVDQLSSPLLILSCWLLPIMIIASQNHLATEPLNRQRTYITTLTSLQIALIVA 109 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + +++LFYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++ + Sbjct: 110 FSATELILFYITFEITLIPTLMLITRWGNQAERLNAGIYFLFYTLMGSLPLLVALLSL-- 167 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + ++ L P + W W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 168 QNSEGTLSTLLMQLDTPTMLTSWANKAWWLACLIAFMVKMPLYGAHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA I+LK+GGYG +R + L P + A L+L +I S + + QTD+K +I Sbjct: 228 SMVLAAILLKLGGYGIMRVSM-LLPASMNDLAYPFIILALWGVIMTSSICLRQTDLKSMI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GA+ M++HGL+SSALF Y+R H+R + Sbjct: 287 AYSSVSHMGLVIAAAMIQTPWSFSGAIVLMVAHGLISSALFCLANTNYERTHSRTLLLSR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ +P ++ +ANM LP + +GE V++++F SN +L G +L+A Y Sbjct: 347 GMQIILPLMGAWWLLSNLANMALPPSPNLMGELSVMVAMFNWSNWTILLTGSGTLLTAAY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 SL+++ G + + + L RE ++ Sbjct: 407 SLYMFLMTQRGPTP-QHLTALNPTHTREHTLM 437 >gi|212725518|ref|YP_002317268.1| NADH dehydrogenase subunit 4 [Trachemys scripta] gi|211906393|gb|ACJ11688.1| NADH dehydrogenase subunit 4 [Trachemys scripta] gi|326368094|emb|CBX49662.1| NADH dehydrogenase subunit 4 [Trachemys scripta elegans] Length = 460 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 130/395 (32%), Positives = 213/395 (53%), Gaps = 21/395 (5%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKS-IQENF-REYMIAFLV--LESMVIGAF 129 F +Y++ +D IS L+ L+ +LTP IL+S I E R+ F++ L+ ++ AF Sbjct: 52 FSNYYMSIDYISAPLLTLSCWLTPLTILASQNHLITEPIPRKQTFTFIIILLQISLVLAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FEA+LIP II WG ER+ A F YT GS+ +L A++ + + Sbjct: 112 SATELIMFFIMFEATLIPTLAIITRWGNQMERLNAGTYFLFYTLIGSLPLLIALLSL--Q 169 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + ++ P W W A +F IK+P++ H WLP AHV+AP AGS Sbjct: 170 NQIGTLSTHMIQLNQPTMSNTWAHTTWWFALLTAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L PL+ P + L+L +I + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGIIRIMPTLNPLSKTLSYPFMV-LALWGVIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 289 YSSVSHMGLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL---- 344 Query: 365 LVHNM----PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 L NM P ++ ++ ++ANM +P T +GE +I S+F SN ++ G +++ Sbjct: 345 LARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIITSLFNWSNITILMTGSGTIIT 404 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 A Y+L++ +G + ++ + RE ++ Sbjct: 405 ATYTLYMLSTTQWGGTP-SYIKTMPPTHTREHLLM 438 >gi|108793445|ref|YP_636903.1| NADH dehydrogenase subunit 4 [Bregmaceros nectabanus] gi|25005604|dbj|BAC23265.1| NADH dehydrogenase subunit 4 [Bregmaceros nectabanus] Length = 457 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 132/401 (32%), Positives = 215/401 (53%), Gaps = 16/401 (3%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYFCSYH-------LGVDGISILLVVLTTFLTPFCI 100 S ++WS +S+F + W+++ + D +S L+VL+ +L P I Sbjct: 20 SKWLWSTL-LAQSTFISLMSLTWLNFSSGTKWSTLNLLMASDSLSTPLLVLSCWLLPLMI 78 Query: 101 LSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG 156 ++S + R Y+ + L+ +I F + +M++F+I FEA+LIP +II WG Sbjct: 79 IASQNHMTSEPMVRQRIYISLLVTLQVFLIVTFSTTEMVMFFIMFEATLIPTLLIITRWG 138 Query: 157 G-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--IIDLYAMSKFPFSIQYWMWI 213 ++R+ A F +T GS+ +L A++ + + S II+ + FP +WI Sbjct: 139 NQAQRLNAGTYFLFFTLAGSLPLLVALLTLQNNLGSLSFLIIEYLEPTHFPPIAAKLLWI 198 Query: 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY 273 A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG IR +L + + + Sbjct: 199 ACILAFLVKLPLYGMHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMIRLMLIISSIPEKT 258 Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333 P I L+L +I S + + QTD+K LIAYSS+ HMG V I G+ GA+ M Sbjct: 259 VYPFIV-LALWGVIMXSSICLRQTDLKSLIAYSSVGHMGLVAAAILIQTPWGLTGAIILM 317 Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393 ++HGL SSALF Y+R HTR + GL +P + T+AN+ LP + Sbjct: 318 IAHGLASSALFCLANTNYERTHTRTMLLTRGLQSALPLMTLWWFFMTLANLALPPLPNLM 377 Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 GE +++ ++F S +L G +++A YSL+++ G Sbjct: 378 GELIILTALFNWSPWTLLLTGVGTLITATYSLYMFLTTQRG 418 >gi|156073008|gb|ABU45833.1| NADH dehydrogenase subunit 4 [Eulemur rubriventer] Length = 459 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 123/356 (34%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + +E++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLMILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYIQNYLGSLNMLT 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MKFYLQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILDPL-TKHMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V +GI GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVVVGILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQALLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILVGLNMLITALYSLYM 410 >gi|189220223|ref|YP_001940863.1| NADH dehydrogenase subunit M [Methylacidiphilum infernorum V4] gi|189187081|gb|ACD84266.1| NADH dehydrogenase subunit M [Methylacidiphilum infernorum V4] Length = 488 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 132/422 (31%), Positives = 228/422 (54%), Gaps = 17/422 (4%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFC----SYHLGVDGISILLVVLT 92 AL S +NF+ SL+++ +D S +Q ++ WI YH+GVDGI++ LV+LT Sbjct: 28 ALWASLLNFLASLWLYFQYDPHLSGYQFVQDNRWIQLPALPEIHYHVGVDGINLPLVLLT 87 Query: 93 TFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 T +T ++ S + I+ E+ L + +GAF+SLD+ FYIF E +L+P F++I Sbjct: 88 TVVTLAAVIVSPRGIKRE-PEFYSYLLAISLGALGAFVSLDLFFFYIFHEFALVPTFLLI 146 Query: 153 GVWGGSERIYAAYKFFLYTFFGSIFMLFAI----VVMCWEKKT---SSIIDLYAMSKFPF 205 G+WG R + + + LY GS+ +L I V++ E +T +++D + P Sbjct: 147 GIWGSENRQFVSLQITLYLIVGSMILLVGILALLVLLPPEARTFDIPTLVDYVRLHPLPI 206 Query: 206 SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLP 265 + + F + +FPF+TW P+ + APT ++ AG++ K G YG +R +P Sbjct: 207 MKEPLAFGFLLVGFGTLVSLFPFYTWAPSGYAVAPTPAAMLHAGVLKKFGLYGLLRLAIP 266 Query: 266 LFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSG 325 L P +++ +++ L L I+Y V++ Q ++ ++ YSS+ HMGY+ +G+ + G Sbjct: 267 LLPGGLEHWKALLYALLLGNILYIGYVTIAQKELTTMLGYSSVMHMGYLFLGLATWNTIG 326 Query: 326 VEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMG 385 + G + M++HGL + LF G I D+ GGL MP +V ++ + A++G Sbjct: 327 LSGVVLLMVAHGLSIALLFALAGEIKDKTGEIKFSELGGLGQRMPFVSVAFILASFASIG 386 Query: 386 LPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG-----VSKCEK 440 +PG + F GE L+ ++ + LA +G+V+SA+Y L + V FG + + E Sbjct: 387 VPGLANFAGELLIFFGSWKVQPWITALAIWGIVISAVYQLRAVQSVFFGKLPPHLKEVED 446 Query: 441 VQ 442 VQ Sbjct: 447 VQ 448 >gi|156765963|ref|YP_001434562.1| NADH dehydrogenase subunit 4 [Anarhichas lupus] gi|146160769|gb|ABQ08612.1| NADH dehydrogenase subunit 4 [Anarhichas lupus] Length = 460 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P I++S R Y+ L+ +I AF + + Sbjct: 56 YMATDLLSTPLLVLTCWLLPLMIMASQSHTALEPINRQRTYITLLTSLQIFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLLQNSAGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSDPVQLTSYADKLW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMVVMLDPLTQELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFSGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S VL G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGEIMIITSMFNWSWWTLVLTGAGTLITASYSLYMF 412 >gi|205351313|ref|YP_002229122.1| NADH dehydrogenase subunit 4 [Lutjanus bengalensis] gi|198387223|gb|ACH87066.1| NADH dehydrogenase subunit 4 [Lutjanus bengalensis] Length = 460 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L YA + ++ + W W A +F + +P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYANPLQLTTYADKLW-WAACLLAFLVNMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVVLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLILTGAGTLITAGYSLYMF 412 >gi|146160782|gb|ABQ08624.1| NADH dehydrogenase subunit 4 [Anarhichas minor] Length = 460 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P I++S R Y+ L+ +I AF + + Sbjct: 56 YMATDLLSTPLLVLTCWLLPLMIMASQSHTALEPINRQRTYITLLTSLQIFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLLQNSAGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSDPVQLTSYADKLW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMVVMLDPLTQELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFSGALTLMIAHGLASSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P V ++AN+ LP +GE ++I S+F S VL G +++A YSL+++ Sbjct: 354 PLMTTWWFVASLANLALPPLPNLMGEIMIITSMFNWSWWTLVLTGAGTLITASYSLYMF 412 >gi|21717313|ref|NP_659297.3| NADH dehydrogenase subunit 4 [Lemur catta] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 202/363 (55%), Gaps = 14/363 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S LVVLT +L P I++S +++ ++ I+ L+ L+ +I F + +++LF Sbjct: 59 DSLSSPLVVLTMWLLPLMIMASQHHLKKEPWTLKKLYISMLIFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHI---QNYLGSLN 175 Query: 197 LYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + MS F W +W+A +F +K+P++ H WLP AHV+AP AGS+ L ++ Sbjct: 176 MLTMSFCFQELSNSWSSNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLPPVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ ++Y A L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPM-TKYMAYPFLMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQTILPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSLYMLTTT 414 Query: 432 VFG 434 G Sbjct: 415 QRG 417 >gi|310788902|gb|ADP24454.1| NADH dehydrogenase subunit 4 [Puntioplites proctozystron] Length = 460 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 214/387 (55%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y++ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRSYIMLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLLGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHITGLQPFHTREHLLM 438 >gi|12484234|gb|AAG54020.1|AF224600_4 NADH dehydrogenase subunit 4 [Propithecus tattersalli] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 202/359 (56%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S +++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLLILTMWLLPLMIMASQYHLKKEPWLRKKSYLSMLISLQMFLVMTFTANELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHL---QNSMGSLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L M+ + P S W +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA Sbjct: 176 LLTMNFWLKELPNS---WSSNLLWMACIMAFMVKMPLYGFHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITIILDPTTKAMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPSINLIGELFVMMASFSWSNISIILMGLNMLITALYSLYM 410 >gi|89257270|ref|YP_514719.1| NADH dehydrogenase subunit 4 [Denticeps clupeoides] gi|88759268|dbj|BAE79951.1| NADH dehydrogenase subunit 4 [Denticeps clupeoides] Length = 460 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 133/392 (33%), Positives = 209/392 (53%), Gaps = 13/392 (3%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGA 128 Y + +L +D +S ++LT +L P IL+S + + + Y+ + L+ ++I A Sbjct: 51 YTSNEYLAIDPLSTPFLILTCWLLPLMILASQNHMSSEPIKRQQVYLSLMVSLQMLLIMA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + ++++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++ + Sbjct: 111 FGATELIMFYIMFEATLIPTLMIITRWGNQTERLNAGIYFLFYTLMASLPLLVALLSLQV 170 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T S++ L PF W W+ +F +KIP++ H W+P AHV P AG Sbjct: 171 TTGTLSMLILCYSDPMPFFT--WSDKIGWMGGLMAFMVKIPLYGVHLWMPKAHVGGPNAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA I+LK+GGYG +R + L PL + P I L+L +I + + QTD+K LI Sbjct: 229 SMVLAAILLKLGGYGMMRITILLDPLTKEMAYPFII-LALWGVIMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVAAGILIQTPWGFTGAIILMIAHGLVSSALFCLANTTYERTHSRTMVLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL P A + +AN+ LP +GE ++I ++F S +L G +++A Y Sbjct: 348 GLQMIFPLTATWWFITNLANLALPPLPNLMGEIMIITTMFNWSPYTLILTGLGTLITASY 407 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 SL+++ G + + L RE ++ Sbjct: 408 SLYMFLMTQRGPTPSH-IMGLTPFHTREHLLI 438 >gi|21717319|ref|NP_659359.3| NADH dehydrogenase subunit 4 [Eumetopias jubatus] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 122/348 (35%), Positives = 192/348 (55%), Gaps = 11/348 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFTATELIMFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS-IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A++ M T + ++ Y P S W +W+A +F +K+P+ Sbjct: 153 TLLGSLPLLVALLYMQNNMGTLNFLMAQYWTQALPNS---WSNILLWLACMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S + A LS+ Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITIQLNPLTS-FMAYPFMMLSMWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPLSYMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R H+R + GL +P A ++ ++ N+ LP T IGE V+M+ F Sbjct: 329 LANSNYERTHSRIMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SNT +L ++++ALYSL++ G + ++ +K RE Sbjct: 389 SNTTIILMGANIIITALYSLYMLITTQRG-NYTYHIKNIKPSFTRENT 435 >gi|209447687|gb|ACI47148.1| NADH dehydrogenase subunit 4 [Lepilemur otto] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 199/372 (53%), Gaps = 28/372 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTMWLFPLTIMASQYHLTKEPSQRKKHFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMVTYWSQEMSNSWSNSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + ++ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITVATFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVS 436 L++ G S Sbjct: 408 LYMLTMTQRGKS 419 >gi|153124132|ref|YP_001382355.1| NADH dehydrogenase subunit 4 [Enhydra lutris] gi|152962771|dbj|BAF74005.1| NADH dehydrogenase subunit 4 [Enhydra lutris] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 115/327 (35%), Positives = 180/327 (55%), Gaps = 24/327 (7%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ + L+ ++I F S ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLITLQLLLIMTFTSTELIMFYILFEATLMPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW------------MWIAFFCS 218 T GS+ +L A++ W + + L IQ+W +W+A + Sbjct: 153 TLVGSLPLLIALL---WTQNNLGTLHLLV-------IQFWVQPLPNTWSNTLLWLACMMA 202 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + P + Sbjct: 203 FMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMLLNPLTNHMAYPFM 262 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL +I S + + QTD+K LIAYSS++HM V + + GA M++HGL Sbjct: 263 M-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAVLIQSPWSYTGATALMIAHGL 321 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 SS LF Y+R+H+R + GL +P A ++ ++ N+ LP T +GE V Sbjct: 322 TSSLLFCLANSNYERIHSRTMILARGLQMLLPLMAAWWLLASLTNLALPPTINLVGELFV 381 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSL 425 +M+ F SN +L + ++ALYSL Sbjct: 382 VMASFSWSNITIILLGINITITALYSL 408 >gi|110433059|gb|ABG74267.1| NADH dehydrogenase subunit 4 [Lepilemur sahamalazensis] gi|110433064|gb|ABG74271.1| NADH dehydrogenase subunit 4 [Lepilemur sahamalazensis] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 199/365 (54%), Gaps = 14/365 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLALTMWLLPLTIMASQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP VII WG +ER+ A F YT GS+ +L A+ + + ++ Sbjct: 119 YILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QNHMGTLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + + W W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWSEELPNSWSSNLTWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL +++ A L L ++ SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPL-TKFMAYPFLMLCLWGMVMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLTRGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + IGE + M+ F SN +L ++++A YSL++ Sbjct: 355 MSTWWLLASLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYMLAMT 414 Query: 432 VFGVS 436 G S Sbjct: 415 QRGKS 419 >gi|269302355|gb|ACZ29027.1| NADH dehydrogenase subunit 4 [Enhydra lutris] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 115/327 (35%), Positives = 180/327 (55%), Gaps = 24/327 (7%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ + L+ ++I F S ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLITLQLLLIMTFTSTELIMFYILFEATLMPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW------------MWIAFFCS 218 T GS+ +L A++ W + + L IQ+W +W+A + Sbjct: 153 TLVGSLPLLIALL---WTQNNLGTLHLLV-------IQFWAQPLPNTWSNTLLWLACMMA 202 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + P + Sbjct: 203 FMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMLLNPLTNHMAYPFM 262 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL +I S + + QTD+K LIAYSS++HM V + + GA M++HGL Sbjct: 263 M-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAVLIQSPWSYTGATALMIAHGL 321 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 SS LF Y+R+H+R + GL +P A ++ ++ N+ LP T +GE V Sbjct: 322 TSSLLFCLANSNYERIHSRTMILARGLQMLLPLMAAWWLLASLTNLALPPTINLVGELFV 381 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSL 425 +M+ F SN +L + ++ALYSL Sbjct: 382 VMASFSWSNITIILLGINITITALYSL 408 >gi|255077669|gb|ACU00309.1| NADH dehydrogenase subunit 4 [Amphiuma means] Length = 458 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 117/392 (29%), Positives = 216/392 (55%), Gaps = 10/392 (2%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVI 126 ++ + ++ +D +S L+VLT +L P +L+S ++ R Y+ + L++ ++ Sbjct: 48 LNMMTNKYMSLDHVSSPLLVLTCWLMPLMLLASQNHLKYSPPNRQRTYISLLITLQASLV 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM 185 +F ++++FYI FE +L+P +II WG +ER+ A F YT GS+ +L +++ + Sbjct: 108 LSFSVTELMMFYIAFETTLVPTLIIITRWGNQTERLNAGTYFLFYTLMGSLPLLVSLMYL 167 Query: 186 CWEKKTSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T S+I +L ++ P + +W+ +F +K+P++ H WLP AHV+AP AG Sbjct: 168 SQYTGTLSLINLELTNLNLIPSNSSELLWLGCMVAFMVKMPLYGMHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG IR + +F ++ P + ++L ++ + ++ QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGIIRITM-MFSVSVSMSHPFMI-MALWGVLMSGMICTRQTDLKALI 285 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSSI+HMG V GAM M +HGL+SSA+F + Y+RLH+R + Sbjct: 286 AYSSISHMGLVIASTLIQTPWSFTGAMIMMTAHGLISSAMFCLANINYERLHSRSLLLTR 345 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ ++ ++ ++NM LP T E +++ S+F S + G++++A+Y Sbjct: 346 GMQTIFTAMSMWWLIVNLSNMALPPTLNLWAELIIMTSLFNWSVLTVLFMGLGMLITAMY 405 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +L+++ + + L+ RE C++ Sbjct: 406 TLYMFMMTQRS-PLPDYMTNLQPTHTREHCLM 436 >gi|62161150|ref|YP_214962.1| NADH dehydrogenase subunit 4 [Colobus guereza] gi|60392110|gb|AAX19342.1| NADH dehydrogenase subunit 4 [Colobus guereza] gi|95104567|gb|ABF51538.1| NADH dehydrogenase subunit 4 [Colobus guereza matschiei] gi|177543304|gb|ACB73037.1| NADH dehydrogenase subunit 4 [Colobus guereza matschiei] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 140/447 (31%), Positives = 235/447 (52%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FE +LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFETTLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTTQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRIMMLSRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHVTIMLTGLNMLITALYSLYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E +++ PI +L+ + G+ P Sbjct: 433 ENMLMFMHLSPIILLSLNPNIIMGLTP 459 >gi|51339395|gb|AAU00461.1| NADH dehydrogenase subunit 4 [Vulpes lagopus] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 206/389 (52%), Gaps = 29/389 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ +L+ ++I F + +++LF Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQFHLSKEPLIRKKLYISMLTLLQLLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALLYI--QNNMGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LM--------IQYWIQPLPSSWSNVFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTLLNPLTNLMAYPFML-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+M+ F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNITIILMGTNIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KHTHHIKNIKPSFTRENA 435 >gi|209447682|gb|ACI47144.1| NADH dehydrogenase subunit 4 [Lepilemur otto] gi|209447692|gb|ACI47152.1| NADH dehydrogenase subunit 4 [Lepilemur otto] gi|209447697|gb|ACI47156.1| NADH dehydrogenase subunit 4 [Lepilemur otto] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 199/372 (53%), Gaps = 28/372 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTMWLFPLTIMASQYHLTKEPSQRKKHFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMVTYWSQEMANSWSNSLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MILAAILLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ ++ N+ LP + IGE + ++ F SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLASLTNLALPPSINLIGELFITVATFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVS 436 L++ G S Sbjct: 408 LYMLTMTQRGKS 419 >gi|21622592|emb|CAD21741.2| NADH dehydrogenase subunit 4 [Eumetopias jubatus] Length = 464 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 122/348 (35%), Positives = 192/348 (55%), Gaps = 11/348 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFTATELIMFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS-IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A++ M T + ++ Y P S W +W+A +F +K+P+ Sbjct: 153 TLLGSLPLLVALLYMQNNMGTLNFLMAQYWTQALPNS---WSNILLWLACMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S + A LS+ Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITIQLNPLTS-FMAYPFMMLSMWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPLSYMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R H+R + GL +P A ++ ++ N+ LP T IGE V+M+ F Sbjct: 329 LANSNYERTHSRIMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SNT +L ++++ALYSL++ G + ++ +K RE Sbjct: 389 SNTTIILMGANIIITALYSLYMLITTQRG-NYTYHIKNIKPSFTRENT 435 >gi|30142192|gb|AAP13868.1| NADH dehydrogenase subunit 4 [Etheostoma virgatum] Length = 461 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 134/360 (37%), Positives = 202/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTASEPPTRQRMYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLIIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQSSSGTL 175 Query: 193 SIIDLYAMSKFP----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+I L S P F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITL-QFSDPPQLTSFADKLW-WAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL P I F +L +I V + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRIIVMLDPLTKDLSYPFIIF-ALWGVIMTGSVCLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQML 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A V ++AN+ LP +GE +++ S+F S L G++++A YSL+++ Sbjct: 353 LPLMAAWWFVASLANLALPPLPNLMGELMIVTSLFNWSWWTLALTGTGMLITASYSLYMF 412 >gi|110432610|gb|ABG73908.1| NADH dehydrogenase subunit 4 [Lepilemur microdon] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 205/366 (56%), Gaps = 14/366 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILTMWLFPLTIVASQYHLTKEPWERKKHFLSTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSHI---QNSMGTLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL P + + L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMILNPLTKSMAYPFLM-MCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I + GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERIHSRTMLLARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ +++N+ LP + +GE LV M+ F SNT +L ++++A YSL++ Sbjct: 355 MSTWWLLASLSNLALPPSINLMGELLVTMAAFSWSNTTIILTGLNMLITATYSLYMLTTT 414 Query: 432 VFGVSK 437 G S Sbjct: 415 QRGKSS 420 >gi|12667715|ref|NP_075404.1| NADH dehydrogenase subunit 4 [Thryonomys swinderianus] gi|12657506|emb|CAC27808.1| NADH dehydrogenase subunit 4 [Thryonomys swinderianus] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 199/346 (57%), Gaps = 14/346 (4%) Query: 92 TTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIP 147 TT+L P I++S +++ +R+ Y+ + L +M+I F + +M+LFY+ FEA+LIP Sbjct: 69 TTWLLPLTIIASQHHLKQEPLYRKKIYITLLISLHTMLIMTFTASEMILFYVLFEATLIP 128 Query: 148 MFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-IDLYAMSKFPF 205 ++I WG +ER+ A F YT S+ +L A++ + + T S+ LY + P Sbjct: 129 TLIVITRWGNQTERMNAGLYFLFYTLIASLPLLVALLYL--QNSTGSLNFLLYKLKALPL 186 Query: 206 SIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIR 261 + W +W+A +F +K+PM+ H WLP AHV+AP AGS+ LA I+LK+GGYG +R Sbjct: 187 -LPTWSNDLLWLACIMAFMVKLPMYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMR 245 Query: 262 FLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSG 321 L PL + P I LSL ++ S + + QTD+K LIAYSS++HM V + I Sbjct: 246 ISQLLDPLTNTMMYPFIM-LSLWGMLMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQ 304 Query: 322 MKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTM 381 GA M++HGL SS LF Y+R H+R + GL +P A+ M+ + Sbjct: 305 TPLSYAGATTLMIAHGLTSSLLFCLANSNYERTHSRTMLLARGLQVILPLMALWWMLSSF 364 Query: 382 ANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +N+ LP T +GE ++I+S F SN + + ++++A+YSL++ Sbjct: 365 SNLALPPTINLLGEMMIIISSFSWSNFTMLFMALNMLVTAMYSLYM 410 >gi|29788207|dbj|BAC75527.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] Length = 452 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 127/377 (33%), Positives = 213/377 (56%), Gaps = 11/377 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ LV+L+ +L P +++S + + ++ R ++I ++L S ++ AFL+ D+LLF Sbjct: 58 DFMSVALVILSVWLLPLMLIASQQHMAKDTGLYQRIFIICQVILTSALVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F+ YT GS+ +L +V ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFYTMVGSLPLLICLVGQ-YKMMGSLSLD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L + K + W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LILGGVYKGEYFTNLW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + ++ V+F L+L ++ + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGLMRISYA-WGASALLSGEVVFALALWGMVVMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI +G G GAM M++HGLVSS LF Y+R H+R++ G++ P Sbjct: 295 VGGIMTGTTWGYNGAMILMIAHGLVSSCLFSLANYWYERSHSRNLLGSRGMIILFPLMGA 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + ++ N+ LP T GE + +++V+ S + G VL+A YSL+++ +G Sbjct: 355 GWFIASLMNLALPPTINLFGELVAMVAVYNWSMFSVIFMGVGAVLTAAYSLYMFGMSQWG 414 Query: 435 VSKCEKVQQLKDLSLRE 451 E + L ++ RE Sbjct: 415 -EVLENYKNLHVMTSRE 430 >gi|177543279|gb|ACB73017.1| NADH dehydrogenase subunit 4 [Colobus angolensis] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 132/410 (32%), Positives = 217/410 (52%), Gaps = 17/410 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFL 130 CS HL D ++ L++LT +L P I++S + + Y+ + L+ +I F+ Sbjct: 52 CSTHLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPSRKKLYLSMMIFLQISLIMTFM 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L ++ + + Sbjct: 112 ATELILFYILFETTLIPTLIIITRWGIQAERLNAGTYFLFYTLTGSLPLLIMLLYIYNDL 171 Query: 190 KTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + +I+ L ++ S +W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLNIMFLTLTAQKLTSTWSHNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L P+ ++Y A LSL +I S + + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMR-LTPILDPLTEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVIVASLIQTPWSFTGAIILMIAHGLTSSMLFCLANSNYERTHSRIMMLSRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + + N+ LP T +GE LV+ + F S+ + ++++ALYSL + Sbjct: 351 LLPLMAFWWFMANLTNLALPPTINLMGELLVVTTSFSWSHITIMFTGLNMLITALYSLHM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVL----TVFFGIYP 469 Y G + +K RE +++ PI +L ++ G+ P Sbjct: 411 YITTQRG-PLTHHITNIKPSFTRENMLMFMHLSPIILLSLNPSIIMGLTP 459 >gi|83779487|gb|ABC47551.1| NADH dehydrogenase subunit 4 [Uroderma bilobatum] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 125/363 (34%), Positives = 198/363 (54%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ ++L+ +I F S ++++F Sbjct: 59 DSLSTPLLMLTMWLLPLMIIASQSHLANEYTTRKKSYITMLILLQIFLIMTFTSTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLLPTLIIITRWGNQAERLNAGLYFLFYTLVGSLPLLVALI---------HIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L F + QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 LTGTLNFLLT-QYWTTPLPTSWSNNLLWLACMTAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITILLEPLTDYMMYPFMM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V M+++ SN +L ++L+ LYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLIGELFVTMAMYSWSNLSIILLGLNIILTGLYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|38707594|ref|NP_944733.1| NADH dehydrogenase subunit 4 [Pontoporia blainvillei] gi|38602553|emb|CAD88010.1| NADH4 protein [Pontoporia blainvillei] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 203/363 (55%), Gaps = 14/363 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFL 130 CS D +S L++LT +L P +++S + +E F + Y+ ++L++ +I F Sbjct: 52 CSLMFFSDSLSTPLLILTMWLLPLMLMASQSHLMKEPFTRKKLYITMLVLLQTFLIMTFT 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++ LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L VV+ + + Sbjct: 112 ATELTLFYIMFEATLIPTLIIITRWGSQTERLNAGLYFLFYTLMGSLPLL---VVLMYMQ 168 Query: 190 KTSSIIDLYAMS--KFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T ++ M P + + +MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 169 NTLGSLNFLLMQYQAQPMANSWSSVFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITSILDPLTKNMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSSI+HM VT I GA+ M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSISHMALVTTAILIQTPWSYTGAITLMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P ++ ++AN+ LP T IGE LV MS F SN L V++ALYS Sbjct: 348 LQMFLPLMVTWWLLASLANLALPPTINLIGELLVAMSTFSWSNPTIFLMGVNTVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|16356935|ref|NP_443654.1| NADH dehydrogenase subunit 4 [Monopterus albus] gi|16267250|dbj|BAB70374.1| NADH dehydrogenase subunit 4 [Monopterus albus] Length = 460 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 121/358 (33%), Positives = 198/358 (55%), Gaps = 8/358 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+ LT +L P IL+S + ++ R Y+ + L+ +I AF + + Sbjct: 56 YMATDPLSSPLLTLTCWLLPLMILASQNHLAQDPLVRQRIYITLLVTLQLSLIMAFAATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 + +FY+ FE +LIP ++I WG ER+ A F YT S+ +L ++ + + T Sbjct: 116 LTMFYVMFETTLIPTLILITRWGNQMERLNAGTYFLFYTLASSLPLLITLLALQNKTGTL 175 Query: 193 SIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 S++ + + P S + W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 SLLIIQLLGPIPISPYVNIIWWTTSLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R +L L PLA + P I L+L ++ S + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMLILSPLAKELCYPFII-LALWGVLMTSSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I G+ GA+ M++HGL SSALF Y+R H+R + G +P Sbjct: 295 MGLVAAAILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMILTRGSQMILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A ++ +AN+ LP +GE ++I ++ S + G +++A YSL++Y Sbjct: 355 LMATWWLITCLANLALPPLPNLMGELIIISALLGWSWWTIIFTGAGALITATYSLYMY 412 >gi|311788474|gb|ADQ12858.1| NADH dehydrogenase subunit 4 [Neosalanx anderssoni] Length = 460 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 125/360 (34%), Positives = 198/360 (55%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VL+ +L P IL+S + R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPLLVLSCWLLPLMILASQNHMSSEPITRQRTYITLLASLQACLIMAFAATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +L+FY+ FEA+LIP +II WG +ER+ A +T S+ +L A++ + E T Sbjct: 116 LLMFYVMFEATLIPTAIIITRWGNQAERLDAGTNLLFFTLISSLPLLVALLFLQNEVGTL 175 Query: 193 SIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+I L P + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLISLQFAE--PAHLCTWADKLWWAACITAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R +L L PL + P+I ++L I ++ + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGIMRMMLFLDPLPEELVTPIIM-VALWGTIMTGVICLRQTDLKALIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGL SSALF + Y+R +R I G Sbjct: 293 GHMGLVISGILVQTAWGCTGAIALMIAHGLSSSALFCLANLTYERTQSRTILLTRGTQMT 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A+ + T++N+ LP +GE + ++F S ++ +++A YSL+L+ Sbjct: 353 LPLTAIWWFMCTLSNLALPPLPNLMGELAITTALFDWSPWTIIILGLAGLITAAYSLYLF 412 >gi|317097102|ref|YP_004123239.1| NADH dehydrogenase subunit 4 [Rattus lutreolus] gi|290573393|gb|ADD46513.1| NADH dehydrogenase subunit 4 [Rattus lutreolus] Length = 459 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 135/394 (34%), Positives = 215/394 (54%), Gaps = 17/394 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P IL+S +++ + Y+ + L++++I F + +++LF Sbjct: 59 DPLSTPLIILTAWLLPLMILASQNHMKKETPTHQKLYISMLISLQTLLIMTFSTTELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALLSIQNSMGTLNFLI 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +++ P S W MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 L-SLTTQPLS-STWSNNIMWLACMMAFMVKMPLYGVHLWLPKAHVEAPIAGSMILAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRVSIILDPLTKSLAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 296 LVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQTIFPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP +GE ++M+ F SN +L + +V++ +YS+++ Sbjct: 356 ATWWLLASLANLALPPLINLMGELFIVMATFSWSNPSIILTATNIVITGMYSMYMIITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLT 462 G + L+ RE + + P+ +LT Sbjct: 416 RG-KLTSHMNNLQPSHTRELTLMALHIIPLLLLT 448 >gi|264681194|ref|YP_003289037.1| NADH dehydrogenase subunit 4 [Micrurus fulvius] gi|262073523|gb|ACY09617.1| NADH dehydrogenase subunit 4 [Micrurus fulvius] Length = 445 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 133/377 (35%), Positives = 200/377 (53%), Gaps = 15/377 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL----VLESMVIGAFLS 131 + +L +D IS L+VL+ +L P L+S +++ + + AFL +L+ + F++ Sbjct: 47 NMYLMLDNISAPLLVLSYWLLPLAFLASQQTLSKEPVQRQRAFLTMLTLLQLFISLTFMA 106 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 + L YI FEA+LIP ++I WG +ER+ A F LYT S+ +L A + + Sbjct: 107 YTLTLMYIMFEATLIPTLIVITRWGQQAERLTAGSYFMLYTLTTSMPLLMATLFL---NN 163 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 TS+ L+ + P + W +W+A +F K+P++ H WLP AHV+AP AGS+ Sbjct: 164 TSNTPTLFLQTTQPDN--EWTGLILWLACLTAFLAKMPIYGLHLWLPKAHVEAPIAGSMV 221 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG IR L L + F P I LSL ASL + QTD+K LIAYS Sbjct: 222 LAAILLKLGGYGIIRMTQTLPTLKTDMFLPFIV-LSLWGATLASLTRLQQTDLKSLIAYS 280 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 SI+HMG V I + G+ GAM M++HG SSALF Y+R R + G Sbjct: 281 SISHMGLVIAAISIQTQWGLAGAMAMMVAHGFTSSALFCLANTTYERTQARILILTRGFH 340 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 + MP ++ ++ NM P + F GE L+ S+F T+ +L ++++A YSL Sbjct: 341 NIMPMTTTWWLLTSLMNMATPPSMNFTGELLIAASLFNWCPTIIILFGLLMLITASYSLH 400 Query: 427 LYRKVVFGVSKCEKVQQ 443 ++ G Q Sbjct: 401 VFLSTQMGAPALNTPIQ 417 >gi|107736798|ref|YP_626416.1| NADH dehydrogenase subunit 4 [Xenagama taylori] gi|66866358|gb|AAY57827.1| NADH dehydrogenase subunit 4 [Xenagama taylori] Length = 448 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 129/395 (32%), Positives = 214/395 (54%), Gaps = 18/395 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLL 136 +D S L+VL+ +LTP IL+S +++ R +++ ++L++++ + + LL Sbjct: 54 IDKTSSPLIVLSYWLTPMMILASQNHLKKEPTNRKRSFLLNLMLLQTLLTMTLSASNTLL 113 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FY FEA+LIP +II WG +R+ A F YT GS+ +L AI+ + + ++ ++ Sbjct: 114 FYTLFEATLIPTLIIITRWGSQPKRLKAGTYFIFYTLIGSLPLLIAILFLANQGHSNFLL 173 Query: 196 DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 + + +WI+ +F K+P++ H WLP AHV+AP AGS+ LA I+LK+G Sbjct: 174 YPTNKTTTHPTTNNILWISCMLAFLTKMPLYGLHLWLPKAHVEAPIAGSMLLAAILLKLG 233 Query: 256 GYGCIRFLLPLFPLASQ---YFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 GYG IR L P+ ++ PV+ LSL I+ + M +TD+K LIAYSS++HMG Sbjct: 234 GYGIIR----LHPINTENVWLIYPVVA-LSLWGIVMTGMTCMRKTDLKALIAYSSVSHMG 288 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 VT + + A+ M++HGL SS LF ++Y+R +TR + P Sbjct: 289 LVTSATLIQTPNSITAAVTMMIAHGLTSSMLFCLANMLYERTNTRTTLSMRSTHSLTPTM 348 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ ++ N+ LP T FIGE ++ S+F S +L + G V+SA+YSL +Y Sbjct: 349 TNFWLIASLTNLALPPTINFIGEIQIMTSLFNWSPITIILTATGTVISAIYSLQMYSNTQ 408 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 G ++ + + RE ++ PI +LT+ Sbjct: 409 QG-HPSPNLKNIYPMQTRELLILTMHTIPIVLLTI 442 >gi|291464861|gb|ADE05935.1| NADH dehydrogenase subunit 4 [Pan paniscus] Length = 459 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 134/395 (33%), Positives = 218/395 (55%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPPSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A+ + +I+ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALTYTHNTLGSLNIL- 177 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 356 AFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G + +K RE +++ PI +L++ Sbjct: 416 WG-PLTHHINNMKPSFTRENTLMFMHLSPILLLSL 449 >gi|254674567|dbj|BAH86115.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] Length = 452 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 127/377 (33%), Positives = 212/377 (56%), Gaps = 11/377 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ LV+L+ +L P +++S + + ++ R ++I ++L S ++ AFL+ D+LLF Sbjct: 58 DFMSVALVILSVWLLPLMLIASQQHMAKDTGLYQRIFIICQVILTSALVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F+ YT GS+ +L +V ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFYTMVGSLPLLICLVGQ-YKMMGSLSLD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L K + W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LVLGGTYKGEYFTNLW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + ++ V+F L+L ++ + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGLMRISYA-WGASALLSGEVVFALALWGMVVMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI +G G GAM M++HGLVSS LF Y+R H+R++ G++ P Sbjct: 295 VGGIMTGTTWGYNGAMILMIAHGLVSSCLFSLANYWYERSHSRNLLGSRGMIILFPLMGA 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + ++ N+ LP T GE + +++V+ S + G VL+A YSL+++ +G Sbjct: 355 GWFIASLMNLALPPTINLFGELVAMVAVYNWSMFSVIFMGVGAVLTAAYSLYMFGMSQWG 414 Query: 435 VSKCEKVQQLKDLSLRE 451 E + L ++ RE Sbjct: 415 -EVLENYKNLHVMTSRE 430 >gi|110432530|gb|ABG73844.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432535|gb|ABG73848.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432540|gb|ABG73852.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432555|gb|ABG73864.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432565|gb|ABG73872.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432879|gb|ABG74123.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432884|gb|ABG74127.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432889|gb|ABG74131.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432894|gb|ABG74135.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432899|gb|ABG74139.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432904|gb|ABG74143.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432909|gb|ABG74147.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432914|gb|ABG74151.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432919|gb|ABG74155.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] gi|110432924|gb|ABG74159.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] Length = 459 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 129/402 (32%), Positives = 208/402 (51%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKEPWERKKHFLSVLISLQLFLIMTFTAAELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWTQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ + N+ +P + +GE + M+VF SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLAGLTNLAMPPSINLVGELFITMAVFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGEPPYHAHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|327492621|ref|YP_004347518.1| NADH dehydrogenase subunit 4 [Sphoeroides parvus] gi|327392304|dbj|BAK09752.1| NADH dehydrogenase subunit 4 [Sphoeroides parvus] Length = 460 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 201/364 (55%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYLATDPLSTPLLILSCWLLPLMILASQNHTAHEPISRQRMYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 ASTEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQ-N 170 Query: 189 KKTSSIIDLYAMSKFP----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 S + S P ++ + W W +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 SNGSLSLLTLLHSPLPQLATYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGMMRILVTLEPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + ++AN+ LP +GE ++I S+F S +L G +++A YS Sbjct: 349 MQMALPLMTAWWFIASLANLALPPLPNLMGELMIITSMFNWSWWTIILTGLGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|213135979|gb|ACJ43540.1| NADH dehydrogenase subunit 4 [Chioglossa lusitanica] Length = 458 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 202/375 (53%), Gaps = 39/375 (10%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++ VD IS L+VLT +L P L+S ++ N R Y+ L+ +I AF + Sbjct: 53 NMYMTVDPISSPLLVLTCWLLPLMTLASQNHLKTNPYTRQRMYLAMLTFLQMSLIFAFSA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF----------------FG 174 +++LFYI FE +LIP +II WG +ER+ A F YT G Sbjct: 113 TELILFYIAFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLTLQASLG 172 Query: 175 SIFM-LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233 S+F+ L + +C ++ ++ I+ L A +F +K+P++ H WLP Sbjct: 173 SLFLPLMEPLQLCPKQLSNKILLL----------------ACLLAFMVKMPLYGVHLWLP 216 Query: 234 NAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVS 293 AHV+AP AGS+ LA ++LK+GGYG IR + FPL + P + L+L +I SL+ Sbjct: 217 KAHVEAPVAGSMILAAVLLKLGGYGIIRISIIFFPLMKEMSYPFMI-LALWGVIMTSLIC 275 Query: 294 MVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR 353 M QTD+K LIAYSS++HMG V I + GA+ M+SHGL+SSALF + Y+R Sbjct: 276 MRQTDLKSLIAYSSVSHMGLVIAAILMQTPWSITGAIILMISHGLISSALFCLANLNYER 335 Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413 H+R + G +P A ++ ++NM LP T GE +++S+F S ++ Sbjct: 336 THSRTLLLARGTQIVLPLMATWWLMTNLSNMALPPTMNLWGELTIMVSLFNWSYWTILIT 395 Query: 414 SFGVVLSALYSLWLY 428 G +++A Y+L+++ Sbjct: 396 GLGTLITASYTLYMF 410 >gi|109689675|ref|YP_659547.1| NADH dehydrogenase subunit 4 [Squalogadus modificatus] gi|109452345|dbj|BAE96380.1| NADH dehydrogenase subunit 4 [Squalogadus modificatus] Length = 460 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 201/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D S L+VL+ +L P IL+S + R Y+ L+ +I AF + Sbjct: 54 NTYIATDPFSTPLLVLSCWLLPLMILASQNHLSSEPLNRQRMYLTLLASLQISLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FE +LIP +II WG ER+ A F YT GS+ +L A++++ Sbjct: 114 TELIMFYIMFETTLIPTLIIITRWGNQMERLNAGAYFLFYTLVGSLPLLVALLMLQNNTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ ++ + + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLIIHYTDPLSMTTSGSKIW-WAACMVAFLVKMPLYGMHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG R ++ L PL+ + P + L+L +I A V + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMARLMVTLDPLSKEMIFPFLL-LALWGLIMAGSVCLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R + R + GL Sbjct: 292 VSHMGLVAGGIMIQTPWGFTGALVLMIAHGLASSALFCLANTNYERTNNRTMILARGLQV 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++AN+ LP +GE ++I+S+F S +L G +++A YSL++ Sbjct: 352 ILPLMATWWFTASLANLALPPLPNLMGELMIIVSLFNWSAWTLILTGAGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|74310515|ref|YP_313690.1| NADH dehydrogenase subunit 4 [Boa constrictor] gi|73760196|dbj|BAE19997.1| NADH dehydrogenase subunit 4 [Boa constrictor] Length = 451 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 124/369 (33%), Positives = 198/369 (53%), Gaps = 15/369 (4%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDML 135 +D IS L+ L+ +L P I++S + + R +++ ++L++ + FL+ + Sbjct: 57 NLDSISAPLLTLSYWLLPLMIIASQHMLTSEPLQRQRAFLMTIMLLQTTISLTFLASSLT 116 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 L Y+ FEA+LIP ++I WG +ER+ A F +YT S+ +L A + + TS+ Sbjct: 117 LMYVMFEATLIPTLILITRWGQQAERLTAGTYFIMYTMTTSMPLLMATLFL---NNTSNT 173 Query: 195 IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 L+ M+ P W +W+A +F K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 174 PTLFFMNTQP--TNQWTSLLLWLACLTAFLAKMPIYGLHLWLPKAHVEAPIAGSMVLAAI 231 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L + F P + LSL I A+L + QTD+K LIAYSSI+H Sbjct: 232 LLKLGGYGMIRMMQILPTTKTDMFMPFMI-LSLWGAILANLTCLQQTDLKSLIAYSSISH 290 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I V GAM M++HG SS LF + Y+R HTR + G + +P Sbjct: 291 MGLVIAAIMIQTHWAVAGAMALMIAHGFTSSMLFCLANITYERTHTRILMLTRGFHNILP 350 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 ++ + N+ +P + F GE L++ S+F T ++ ++++A YSL ++ Sbjct: 351 MMTTWWLLANLMNIAIPPSMNFTGELLIVSSLFNWCPTTIIMLGVSMLITATYSLHMFLS 410 Query: 431 VVFGVSKCE 439 G + Sbjct: 411 TQTGKTSSN 419 >gi|289535011|ref|YP_003433799.2| NADH dehydrogenase subunit 4 [Sebastiscus marmoratus] Length = 459 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 201/358 (56%), Gaps = 11/358 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQSHTALEPINRQRTYISLLTSLQVFLIMAFGATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + + S Sbjct: 117 LMFYVMFEATLIPTLIIITRWGNQAERLNAGVYFLFYTLAGSLPLLVALLLLQKDTGSLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ + + P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTIQYTNSSPLSSYADKLW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L PL + P I L+L +I ++ TD+K LIAYSS++H Sbjct: 236 LLKLGGYGMIRMMAMLEPLTKELSYPFII-LALWGVIMTGPLT-PPTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+RLH+R + GL +P Sbjct: 294 MGLVVGGILIQTPWGFAGAVILMIAHGLTSSALFCLANTNYERLHSRTMLLARGLQMVLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A + ++AN+ LP +GE L+I S+F S +L G +++A YSL+++ Sbjct: 354 LMATWWFIASLANLALPPLPNLMGELLIITSLFGWSWWTLILTGAGTLITASYSLYMF 411 >gi|312233331|ref|YP_004021545.1| NADH dehydrogenase subunit 4 [Micropterus floridanus] gi|310619493|gb|ADP01860.1| NADH dehydrogenase subunit 4 [Micropterus floridanus] Length = 460 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 200/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S N + I L L++ +I AF + Sbjct: 54 SLYMATDPLSTPLLVLTCWLLPLMILASQNHTASEPINRQRMFITLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYATPLSLTTCADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIVLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMTSWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|95104591|gb|ABF51556.1| NADH dehydrogenase subunit 4 [Colobus guereza caudatus] Length = 459 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 140/447 (31%), Positives = 234/447 (52%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FEA+LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFEATLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H W P AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWXPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRTMMLSRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHATIMLTGLNMLITALYSLYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E ++ PI +L+ + G+ P Sbjct: 433 ENMLMLMHLSPIILLSLNPNIIMGLTP 459 >gi|9828513|gb|AAG00214.1| NADH dehydrogenase subunit 4 [Ochotona huangensis] Length = 460 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 210/362 (58%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ LVL + +I F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKENLTRKKLFISMLVLLQIFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLV 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + +++ P + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 IQMLTR-PLT-NSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 356 AAWWLLASLANLALPPSINLIGELFVILSTFSWSNFTIILAGINMLITALYTLYMLSTTQ 415 Query: 433 FG 434 G Sbjct: 416 RG 417 >gi|312233289|ref|YP_004021506.1| NADH dehydrogenase subunit 4 [Micropterus salmoides salmoides] gi|310619479|gb|ADP01847.1| NADH dehydrogenase subunit 4 [Micropterus salmoides salmoides] Length = 460 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 202/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S N + I L L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTTSEPINRQRMFITLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L +S ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSTPLSLTTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIVLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMTSWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|12484259|gb|AAG54040.1|AF224605_4 NADH dehydrogenase subunit 4 [Propithecus deckenii deckenii] gi|12484264|gb|AAG54044.1|AF224606_4 NADH dehydrogenase subunit 4 [Propithecus deckenii deckenii] Length = 459 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 202/359 (56%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S +++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQYHLKKEPWLRKKSYLSMLISLQVFLVMTFTANELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHL---QNSMGSLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L M+ + P S W +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA Sbjct: 176 LLTMNFWHKELPNS---WSSNLLWMACIMAFMVKMPLYGFHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITIILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPSINLIGELFVMMASFSWSNISIILMGLNMLITALYSLYM 410 >gi|16357272|ref|NP_443550.1| NADH dehydrogenase subunit 4 [Exocoetus volitans] gi|16267071|dbj|BAB70218.1| NADH dehydrogenase subunit 4 [Exocoetus volitans] Length = 460 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 201/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S + + R Y++ L+ +I AF + Sbjct: 54 SLYMATDPLSTPLLVLTCWLLPLMILASQNHMAMEPENRQRTYILLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TELIMFYVMFEATLIPTLFIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + ++ L + P S + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLXLLTLQHATISPLSTYADKIW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL + P I L+L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMTSLEPLTKELSYPFIV-LALWGVLMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 ALPLMTSWWFLASLANLALPPLPNLMGELMILSSLFNWSPWTLALTGTGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|327492831|ref|YP_004347713.1| NADH dehydrogenase subunit 4 [Tylerius spinosissimus] gi|327392654|dbj|BAK10077.1| NADH dehydrogenase subunit 4 [Tylerius spinosissimus] Length = 460 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L++L+ +L P IL+S R Y+ L+ ++ AF + + Sbjct: 56 YLATDPLSTPLLILSCWLLPLMILASQNHTAHEPVNRQRMYITLLASLQFFLVLAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 MIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNSTGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + +++ ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLMMPHLAQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L +I A + M QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRILITLGPLTKELSYPFII-LALWGVIMAGSICMRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGMQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELMIITSLFSWSFWTIGLTGLGTLITAGYSLYMF 412 >gi|9997010|ref|NP_065224.1| NADH dehydrogenase subunit 4 [Tupaia belangeri] gi|9957743|gb|AAG09460.1|AF217811_10 NADH subunit 4 [Tupaia belangeri] gi|21425548|emb|CAD13258.1| NADH dehydrogenase subunit4 [Tupaia belangeri] Length = 459 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 127/355 (35%), Positives = 204/355 (57%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S + + + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLILTTWLLPLMIMASQNHLSKESPARKKLYISMLVLLQFFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+V M + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLIALVYM--QNVMGSLNF 176 Query: 195 --IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I L S P +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 PLITLTHKSLPPSWSNDLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P+ P + LS+ +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRISIILEPMTKSMAYPFLI-LSMWGMIMTSAICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS +F Y+R+H+R +F GL +P Sbjct: 296 LVIVAIMIQTPWSYMGATMLMVAHGLTSSVMFCLANSNYERVHSRTMFLARGLQTILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A+ ++ +++N+ LP T +GE L+++S F SN +L ++++ALYSL++ Sbjct: 356 ALWWLLASLSNLALPPTINLMGEILIVLSSFSWSNMTIILMGLNMLITALYSLYM 410 >gi|325126672|ref|YP_004285823.1| NADH dehydrogenase subunit 4 [Channa argus] gi|291059220|gb|ADD71970.1| NADH dehydrogenase subunit 4 [Channa argus] Length = 460 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 196/362 (54%), Gaps = 11/362 (3%) Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIG 127 Y SY + D +S L+VLT +L P IL+S R Y+ + L+ +I Sbjct: 51 SYLNSY-MATDSLSTPLLVLTCWLLPLMILASQNHTAHEPINRQRTYITLLISLQFFLIL 109 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 F + ++L+FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 110 TFTATEILMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLLQ 169 Query: 187 WEKKTSSIIDL-YAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T S++ L YA ++ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NSAGTLSLLTLQYATHPQLLTYADKLW-WAGCLLAFMVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL + P I L+L +I + + Q D+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRMMPMLEPLTKELSYPFII-LALWGVIMTGSICLRQADLKALI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H R + Sbjct: 288 AYSSVSHMGLVVGGILVQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHNRTMILAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + ++AN+ P +GE ++I S+F S L G +++A Y Sbjct: 348 GLQMILPLMTTWWFIASLANLAFPPLPNLMGELIIITSLFNWSWWTLALTGAGTLITAAY 407 Query: 424 SL 425 SL Sbjct: 408 SL 409 >gi|288908759|dbj|BAI77016.1| NADH dehydrogenase subunit 4 [Antennarius coccineus] Length = 457 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 134/363 (36%), Positives = 207/363 (57%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWK--SIQENFREYMIAFLVLESMVIG--AF 129 F + ++ D IS L+VLT +L P IL+S +++ R+ M L+ + AF Sbjct: 52 FMNPYMATDHISSPLLVLTCWLLPLMILASQGHMALEPADRQRMFLLLLTFLQTLLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +ML+FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L +++V+ Sbjct: 112 SATEMLMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLLSLLVLQNS 171 Query: 189 KKTSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L + + S Y +WI + +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTL-SFNHLDLSDTYSNKALWIGCLVALLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILTILTPLTKELSYPFII-LALWGLIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+AHMG V GI + G GA+ M++HGL SSALF Y+R H+R I G Sbjct: 290 SSVAHMGLVVAGILTQAPWGYLGALTLMIAHGLTSSALFCLANTNYERAHSRTIILIRGA 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ T+AN+ LP +GE LVI+++F S+ +L +++A YSL Sbjct: 350 QFILPLMATWWLIATLANLALPPLPNLVGELLVIVAMFNWSSWSILLTGTATLITAAYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|315142701|gb|ADT82616.1| NADH dehydrogenase subunit 4L [Nomascus gabriellae] gi|315142715|gb|ADT82629.1| NADH dehydrogenase subunit 4L [Nomascus gabriellae] Length = 458 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 122/350 (34%), Positives = 191/350 (54%), Gaps = 9/350 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYI FE +LIP +II WG ER+ A F Y Sbjct: 92 KLYLSMLITLQISLIMTFTATELMMFYILFETTLIPTLIIITRWGNQPERLNAGSYFLFY 151 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L S P W MW+A +F +K+P++ Sbjct: 152 TLVGSLPLLIALIHTHNTLGSLNIMLLTLSS--PSLTNSWSNNIMWLACVMAFMVKMPLY 209 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 210 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLMLSLWGM 268 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSS++HM V I GA M++HGL SS LF Sbjct: 269 IMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFTGATVLMVAHGLTSSLLFCL 328 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A + ++AN+ LP T +GE V+M+ F + Sbjct: 329 ANSNYERTHSRTMILSRGLQILLPLMAFWWLTASLANLALPPTINLLGELFVLMASFSWA 388 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 NT L ++++ALYSL+++ G + ++ +K RE +++ Sbjct: 389 NTTITLTGLNMLITALYSLYMFITTQRG-TLTHHIKNMKPSLTRENMLMF 437 >gi|281188361|gb|ADA55545.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188389|gb|ADA55571.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188417|gb|ADA55597.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188459|gb|ADA55636.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188515|gb|ADA55688.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188585|gb|ADA55753.1| NADH dehydrogenase subunit 4 [Pan paniscus] Length = 459 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 134/395 (33%), Positives = 217/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPPSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + +I+ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTLGSLNIL- 177 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L PL P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPLTMHMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 356 AFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G + +K RE +++ PI +L++ Sbjct: 416 WG-PLTHHINNMKPSFTRENTLMFMHLSPILLLSL 449 >gi|239997631|gb|ACS37140.1| NADH dehydrogenase subunit 4 [Oscaecilia ochrocephala] Length = 458 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 124/352 (35%), Positives = 196/352 (55%), Gaps = 11/352 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D S L++LT +LTP I++S + + R Y+ + L++ +I AF + + ++F Sbjct: 59 DQFSAPLLILTCWLTPLMIIASQNHLALTPKVRQRTYISMMITLQTTLILAFSATEFIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG ER+ A F YT GS+ +L AI+ + + S+I+ Sbjct: 119 YIMFEATLIPTLIIITRWGNQMERLNAGTYFLFYTLLGSMPLLVAIMTLNTSVGSLSMIN 178 Query: 197 -LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 ++A P W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+G Sbjct: 179 TMFAYQIEPTMTNSIWWVACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 238 Query: 256 GYGCIRF--LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 GYG +R +LP+F S+ A +SL II S + + Q+D+K LIAYSS++HM Sbjct: 239 GYGILRMSIILPMF---SKELAYPFMIMSLWGIIMTSSICLRQSDLKSLIAYSSVSHMAL 295 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V G+ GA+ M++HGL SS LF Y+R + R + GL +P A Sbjct: 296 VIAAALIQTPWGLAGAIILMIAHGLTSSMLFCLANTNYERTNNRTMILSRGLQMVLPLMA 355 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 + ++ + NM +P +GE +I ++F S + G+V++A+Y+L Sbjct: 356 LWWLLANLTNMAMPPYPNLMGELTIISTLFGWSYLTIMATGAGIVITAMYTL 407 >gi|295065590|ref|YP_003587391.1| NADH dehydrogenase subunit 4 [Nomascus siki] gi|293597259|dbj|BAJ04783.1| NADH dehydrogenase subunit 4 [Nomascus siki] Length = 458 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 122/350 (34%), Positives = 191/350 (54%), Gaps = 9/350 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYI FE +LIP +II WG ER+ A F Y Sbjct: 92 KLYLSMLITLQVSLIMTFTATELMMFYILFETTLIPTLIIITRWGNQPERLNAGSYFLFY 151 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L S P W MW+A +F +K+P++ Sbjct: 152 TLVGSLPLLIALIHTHNTLGSLNIMLLTLSS--PSLANSWSNNIMWLACVMAFMVKMPLY 209 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 210 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLMLSLWGM 268 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSS++HM V I GA M++HGL SS LF Sbjct: 269 IMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFAGATILMVAHGLTSSLLFCL 328 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A + ++AN+ LP T +GE V+M+ F + Sbjct: 329 ANSNYERTHSRTMILSRGLQILLPLMAFWWLTASLANLALPPTINLLGELFVLMASFSWA 388 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 NT L ++++ALYSL+++ G + ++ +K RE +++ Sbjct: 389 NTTIALTGLNMLITALYSLYMFITTQRG-TLTHHIKNMKPSLTRENMLMF 437 >gi|95104599|gb|ABF51562.1| NADH dehydrogenase subunit 4 [Colobus guereza] Length = 459 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 135/425 (31%), Positives = 225/425 (52%), Gaps = 19/425 (4%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FEA+LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFEATLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H W P AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWXPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRTMMLSRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHVTIMLTGLNMLITALYSLYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMV 455 E ++ Sbjct: 433 ENMLM 437 >gi|315142548|gb|ADT82474.1| NADH dehydrogenase subunit 4L [Symphalangus syndactylus] Length = 459 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 119/352 (33%), Positives = 191/352 (54%), Gaps = 21/352 (5%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FE +LIP +II WG ER+ A F Y Sbjct: 93 KLYLSMLIILQISLIMTFTATELMMFYILFETTLIPTLIIITRWGNQPERLNAGSYFLFY 152 Query: 171 TFFGSIFMLFAIV----------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 T GS+ +L A++ +M + ++ D ++ MW+A+ +F Sbjct: 153 TLVGSLPLLIALIHTHNTLGSLNIMLLNLSSQNLTDSWS--------NNLMWLAYMMAFM 204 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A Sbjct: 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLM 263 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL +I S + + QTD+K LIAYSS++HM V I GA+ M++HGL S Sbjct: 264 LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFTGAIVLMIAHGLTS 323 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S LF Y+R H+R + GL P A ++ +AN+ LP T +GE V+M Sbjct: 324 SLLFCLANSNYERTHSRIMILSRGLQTLFPLMAFWWLMANLANLALPPTINLLGELFVLM 383 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 + F +NT +L ++++ALYSL+++ G+ ++ +K RE Sbjct: 384 ASFSWANTTIMLTGLNMLITALYSLYMFIMTQRGM-LTHHIKNMKPSLTREN 434 >gi|295065548|ref|YP_003587314.1| NADH dehydrogenase subunit 4 [Symphalangus syndactylus] gi|293597245|dbj|BAJ04770.1| NADH dehydrogenase subunit 4 [Symphalangus syndactylus] Length = 459 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 119/352 (33%), Positives = 191/352 (54%), Gaps = 21/352 (5%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FE +LIP +II WG ER+ A F Y Sbjct: 93 KLYLSMLIILQISLIMTFTATELMMFYILFETTLIPTLIIITRWGNQPERLNAGSYFLFY 152 Query: 171 TFFGSIFMLFAIV----------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 T GS+ +L A++ +M + ++ D ++ MW+A+ +F Sbjct: 153 TLVGSLPLLIALIHTHNTLGSLNIMLLNLSSQNLTDSWS--------NNLMWLAYMMAFM 204 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A Sbjct: 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLM 263 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL +I S + + QTD+K LIAYSS++HM V I GA+ M++HGL S Sbjct: 264 LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFTGAIVLMIAHGLTS 323 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S LF Y+R H+R + GL P A ++ +AN+ LP T +GE V+M Sbjct: 324 SLLFCLANSNYERTHSRIMILSRGLQTLFPLMAFWWLMANLANLALPPTINLLGELFVLM 383 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 + F +NT +L ++++ALYSL+++ G+ ++ +K RE Sbjct: 384 ASFSWANTTIMLTGLNMLITALYSLYMFIMTQRGM-LTHHIKNMKPSLTREN 434 >gi|315142618|gb|ADT82539.1| NADH dehydrogenase subunit 4L [Nomascus leucogenys] gi|315142632|gb|ADT82552.1| NADH dehydrogenase subunit 4L [Nomascus leucogenys] Length = 458 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 122/350 (34%), Positives = 191/350 (54%), Gaps = 9/350 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYI FE +LIP +II WG ER+ A F Y Sbjct: 92 KLYLSMLITLQVSLIMTFTATELMMFYILFETTLIPTLIIITRWGNQPERLNAGSYFLFY 151 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L S P W MW+A +F +K+P++ Sbjct: 152 TLVGSLPLLIALIHTHNTLGSLNIMLLTLSS--PSLANSWSNNIMWLACVMAFMVKMPLY 209 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 210 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLMLSLWGM 268 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSS++HM V I GA M++HGL SS LF Sbjct: 269 IMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFTGATVLMIAHGLTSSLLFCL 328 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A + ++AN+ LP T +GE V+M+ F + Sbjct: 329 ANSNYERTHSRTMILSRGLQILLPLMAFWWLTASLANLALPPTINLLGELFVLMASFSWA 388 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 NT L ++++ALYSL+++ G + ++ +K RE +++ Sbjct: 389 NTTIALTGLNMLITALYSLYMFITTQRG-TLTHHIKNMKPSLTRENMLMF 437 >gi|124055018|gb|ABM89665.1| NADH dehydrogenase subunit 4 [Brookesia superciliaris] Length = 451 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 120/376 (31%), Positives = 207/376 (55%), Gaps = 10/376 (2%) Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----RE 113 G S Q ++ + + ++ VD IS L+VL+ +L P I++S ++ R Sbjct: 35 GMMSLQWLKTPMAANKCLNNYIAVDQISAPLLVLSYWLLPITIMASQNYLKHTTHMQKRI 94 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTF 172 +++ L+S ++ A + ++LLF++ FEA+LIP +II WG ER+ A F YT Sbjct: 95 FLMCLTTLQSFLVVALSTTNLLLFFLMFEATLIPTMIIITRWGSQKERLTAGMYFMFYTL 154 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWL 232 S+ +L A+++ ++ + L M+ + MW+A +F +K+P++ H WL Sbjct: 155 ITSMPLLIALLINNYQTFHLNTTLLSMMNP---KLSMTMWLACTMAFMVKMPLYGLHLWL 211 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P AHV+AP AGS+ LA I+LK+GGYG +R + P+ + P I LSL +I SL+ Sbjct: 212 PKAHVEAPIAGSMVLAAILLKLGGYGMLR-ISPMLYQLENFHLPFIV-LSLWGMIMTSLI 269 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + Q D+K LIAYSS++HMG + + + S + GAM M++HG+ SS LF ++Y+ Sbjct: 270 CLRQPDLKSLIAYSSVSHMGLIVMATMTQTPSSLTGAMILMVAHGVTSSMLFCLANIMYE 329 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 + +TR + G+ ++P + + NM +P T GE ++IM+ F S ++ Sbjct: 330 QTNTRTLIMMQGMQISIPLMTAFWFLANLTNMAIPPTINLFGEIMIIMTTFNWSAPTLII 389 Query: 413 ASFGVVLSALYSLWLY 428 ++A+YS+ ++ Sbjct: 390 TGSTAAITAIYSMHMF 405 >gi|108773533|gb|ABG11821.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] Length = 459 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 136/395 (34%), Positives = 216/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMMLASQNHMKKENMMHQKLYISMLISLQILLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +++ P W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 L-SLTTHPLP-STWSNTILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRVSIILDPLTKSLAYPFII-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 296 LVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP +GE ++M+ F SN +L + +V++ +YS+++ Sbjct: 356 ATWWLLASLANLALPPLINLMGELFIVMATFSWSNPSMILMATNIVITGMYSMYMIITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 416 RG-KPTSHMNNLQPSHTRELTLMALHIIPLMLLTI 449 >gi|25057895|ref|NP_740110.1| NADH dehydrogenase subunit 4 [Lycodes toyamensis] gi|25006120|dbj|BAC23731.1| NADH dehydrogenase subunit 4 [Lycodes toyamensis] Length = 460 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P I++S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMIMASQNHTALEPINRQRTYITLLTSLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLSAGVYFLFYTLAGSLPLLVALLLLQNSAGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSDPVQLASYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMVVMLDPLTQELSYPFIVF-ALWGVIMTGSICVRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGEIMIITSMFNWSWWTLLLTGAGTLITASYSLYMF 412 >gi|332886996|dbj|BAK23104.1| NADH dehydrogenase subunit 4 [Boraras maculatus] Length = 460 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 203/387 (52%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L VD +S + LT +L P IL+S I R Y+ + L++ +I AF + + Sbjct: 56 YLAVDPLSTPFLTLTCWLLPLMILASQNHINSEPVSRQRLYISLLVSLQTFLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLAGSLPLLIALLLL--QHTTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYAQPLAYDSWSHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R ++ L + P I L++ II + + QTD+K LIAYSS+ Sbjct: 234 AILLKLGGYGMMRMMIILDAFNKELAYPFII-LAMWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SS LF Y+R+H+R + GL Sbjct: 293 SHMGLVAGGILIQTTWGFSGAIALMIAHGLTSSMLFCLANTTYERVHSRTMILIRGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE +I ++F S L G +++A YSL++Y Sbjct: 353 FPLTATWWFIANLANLALPPLPNLVGELTIITTMFNWSPWTIALTGMGTLITASYSLYMY 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 413 LMTQRG-QMPNHITNLTPYHTREHLLM 438 >gi|288908949|dbj|BAI77192.1| NADH dehydrogenase subunit 4 [Puck pinnata] Length = 460 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 204/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S + R Y++ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHMAPEPLNRQRTYIMLLTSLQLFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + P + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSTPIPLTTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLVVLEPLTKELSYPFIIF-ALWGLIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + ++AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 LLPLMASWWFIASLANLALPPLPNLMGELMILTSLFNWSPWTLTLTGAGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|254674595|dbj|BAH86141.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] gi|254674609|dbj|BAH86154.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] Length = 452 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 127/377 (33%), Positives = 212/377 (56%), Gaps = 11/377 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ LV+L+ +L P +++S + + ++ R ++I ++L S ++ AFL+ D+LLF Sbjct: 58 DFMSVALVILSVWLLPLMLIASQQHMAKDTGLYQRIFIICQVILTSALVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F+ YT GS+ +L +V ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFYTMVGSLPLLICLVGQ-YKMMGSLSLD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L K + W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LILGGTYKGEYFTNLW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + ++ V+F L+L ++ + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGLMRISYA-WGASALLSGEVVFALALWGMVVMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI +G G GAM M++HGLVSS LF Y+R H+R++ G++ P Sbjct: 295 VGGIMTGTTWGYNGAMILMIAHGLVSSCLFSLANYWYERSHSRNLLGSRGMIILFPLMGA 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + ++ N+ LP T GE + +++V+ S + G VL+A YSL+++ +G Sbjct: 355 GWFIASLMNLALPPTINLFGELVAMVAVYNWSMFSVIFMGVGAVLTAAYSLYMFGMSQWG 414 Query: 435 VSKCEKVQQLKDLSLRE 451 E + L ++ RE Sbjct: 415 -EVLENYKNLHVMTSRE 430 >gi|95104587|gb|ABF51553.1| NADH dehydrogenase subunit 4 [Colobus guereza caudatus] gi|95104611|gb|ABF51571.1| NADH dehydrogenase subunit 4 [Colobus guereza caudatus] gi|177543294|gb|ACB73029.1| NADH dehydrogenase subunit 4 [Colobus guereza] Length = 459 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 140/447 (31%), Positives = 234/447 (52%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHSLTISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FEA+LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFEATLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRTMMLSRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHATIMLTGLNMLITALYSLYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E ++ PI +L+ + G+ P Sbjct: 433 ENMLMLMHLSPIILLSLNPNIIMGLTP 459 >gi|315142492|gb|ADT82422.1| NADH dehydrogenase subunit 4L [Symphalangus syndactylus] gi|315142506|gb|ADT82435.1| NADH dehydrogenase subunit 4L [Symphalangus syndactylus] gi|315142562|gb|ADT82487.1| NADH dehydrogenase subunit 4L [Symphalangus syndactylus] gi|315142590|gb|ADT82513.1| NADH dehydrogenase subunit 4L [Symphalangus syndactylus] gi|315142604|gb|ADT82526.1| NADH dehydrogenase subunit 4L [Symphalangus syndactylus] Length = 459 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 119/352 (33%), Positives = 191/352 (54%), Gaps = 21/352 (5%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FE +LIP +II WG ER+ A F Y Sbjct: 93 KLYLSMLIILQISLIMTFTATELMMFYILFETTLIPTLIIITRWGNQPERLNAGSYFLFY 152 Query: 171 TFFGSIFMLFAIV----------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 T GS+ +L A++ +M + ++ D ++ MW+A+ +F Sbjct: 153 TLVGSLPLLIALIHTHNTLGSLNIMLLNLSSQNLTDSWS--------NNLMWLAYMMAFM 204 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A Sbjct: 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLM 263 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL +I S + + QTD+K LIAYSS++HM V I GA+ M++HGL S Sbjct: 264 LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFTGAIVLMIAHGLTS 323 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S LF Y+R H+R + GL P A ++ +AN+ LP T +GE V+M Sbjct: 324 SLLFCLANSNYERTHSRIMILSRGLQTLFPLMAFWWLMANLANLALPPTINLLGELFVLM 383 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 + F +NT +L ++++ALYSL+++ G+ ++ +K RE Sbjct: 384 ASFSWANTTIMLTGLNMLITALYSLYMFIMTQRGM-LTHHIKNMKPSLTREN 434 >gi|12484244|gb|AAG54028.1|AF224602_4 NADH dehydrogenase subunit 4 [Propithecus verreauxi verreauxi] Length = 459 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 202/359 (56%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S +++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQYHLKKEPWLRKKSYLSMLISLQVFLVMTFTANELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHL---QNSMGSLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L M+ + P S W +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA Sbjct: 176 LLTMNLWLKELPNS---WSSNLLWMACIMAFMVKMPLYGFHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITIILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPSINLIGELFVMMASFSWSNISIILMGLNMLITALYSLYM 410 >gi|47589722|gb|AAT36158.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589742|gb|AAT36162.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589764|gb|AAT36166.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589782|gb|AAT36170.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589799|gb|AAT36174.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589860|gb|AAT36182.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] gi|47589888|gb|AAT36186.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] Length = 459 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 208/381 (54%), Gaps = 9/381 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P +++S K E + ++ + L+ +++ F + ++++F Sbjct: 59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FE++LIP VII WG +ER+ A F YT GS+ +L A+ + + + + Sbjct: 119 YILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSFMGTLNLFM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 MTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L PL P + L L +I SL+ + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I + GA M++HGL SS LF Y+R+H+R + GL +P + Sbjct: 298 IMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMST 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ +++N+ LP + IGE LV + F SNT +L ++++A YSL++ G Sbjct: 358 WWLLASLSNLALPPSINLIGELLVTTAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCMV 455 S +Q RE ++ Sbjct: 418 KSPYH-MQNFSPSLTRENTLM 437 >gi|284178619|ref|YP_003406751.1| NADH dehydrogenase subunit 4 [Larimichthys polyactis] gi|299823672|ref|YP_003734468.1| NADH dehydrogenase subunit 4 [Collichthys niveatus] gi|220961442|gb|ACL93171.1| NADH dehydrogenase subunit 4 [Larimichthys polyactis] gi|289833320|gb|ADD21342.1| NADH dehydrogenase subunit 4 [Larimichthys polyactis] gi|297242124|gb|ADI24734.1| NADH dehydrogenase subunit 4 [Collichthys niveatus] Length = 460 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 199/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTAPEPINRQRMYITLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEMIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + F+ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQFSGPATLTSFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRILPMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VGHMGLVVGGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMALARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + ++AN+ LP + E ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMATWWFIASLANLALPPLPNLMAELMIITSLFNWSWWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|110432550|gb|ABG73860.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] Length = 459 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 129/402 (32%), Positives = 207/402 (51%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKEPWERKKHFLSVLISLQLFLIMTFTAAELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWTQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ + N+ +P + +GE + M+VF SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLAGLTNLAMPPSINLVGELFITMAVFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGEPPYHAHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|25057724|ref|NP_739954.1| NADH dehydrogenase subunit 4 [Zenion japonicum] gi|25005925|dbj|BAC23550.1| NADH dehydrogenase subunit 4 [Zenion japonicum] Length = 460 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 202/366 (55%), Gaps = 14/366 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDM 134 +G D +S L++LT +L P IL+S + QE R Y+ L+ +I AF + ++ Sbjct: 57 MGTDPLSTPLLILTCWLLPLMILASQHHMTQEPLSLQRTYITLLSSLQLFLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A++++ T S Sbjct: 117 LMFYVMFEATLIPTLIIITRWGNQKERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLS 176 Query: 194 II-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ D M+ + I W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 MLTTQYNDTLLMTSWGNKI--W-WAGCMIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L ++ A + + Q D+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRIMVTLNPLSKEMIFPFIV-LALWGVVMAGSICLRQADLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLTRGLQMV 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P +AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMTTWWFTANLANLALPPLPNLMGEIMIISSLFNWSWFTIALTGTGTLITAGYSLYVF 412 Query: 429 RKVVFG 434 G Sbjct: 413 LATQRG 418 >gi|47589827|gb|AAT36177.1| NADH dehydrogenase subunit 4 [Lepilemur mustelinus] Length = 459 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 208/381 (54%), Gaps = 9/381 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLT +L P +++S K E + ++ + L+ +++ F + ++++F Sbjct: 59 DPLSSPLLVLTMWLLPLTVVASQYHLTKEPWERKKHFLSTLISLQLLLVMTFATTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FE++LIP VII WG +ER+ A F YT GS+ +L A+ + + + + Sbjct: 119 YILFESTLIPTLVIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALSYIQSFMGTLNLFM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + + P S Y +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 MTYWLQELPNSWSNYLLWTACIMAFMIKMPLYGLHMWLPKAHVEAPIAGSMILAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L PL P + L L +I SL+ + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITMILNPLTKSMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I + GA M++HGL SS LF Y+R+H+R + GL +P + Sbjct: 298 IMAILIQTPWSLMGATTLMIAHGLTSSVLFCLANSNYERVHSRTMLLARGLQALLPLMST 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ +++N+ LP + IGE LV + F SNT +L ++++A YSL++ G Sbjct: 358 WWLLASLSNLALPPSINLIGELLVTTAAFSWSNTTIILTGLNMLVTATYSLYMLTTTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCMV 455 S +Q RE ++ Sbjct: 418 KSPYH-MQNFSPSLTRENTLM 437 >gi|5835132|ref|NP_008195.1|ND4_10550 NADH dehydrogenase subunit 4 [Pan troglodytes] gi|38503393|sp|P03906|NU4M_PANTR RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|6045101|dbj|BAA85274.1| NADH dehydrogenase subunit 4 [Pan troglodytes] Length = 459 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 133/403 (33%), Positives = 220/403 (54%), Gaps = 19/403 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L++LT +L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSLPFSSDPLTTPLLMLTAWLLPLTIMASQRHLSNEPLSRKKLYLSMLISLQISLIMTFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ + Sbjct: 112 ATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALI---YTH 168 Query: 190 KTSSIIDLYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T +++ ++ + W MW+A+ +F +K+P++ H WLP AHV+AP AGS Sbjct: 169 NTLGSLNILLLTLTTQELSNTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 Y S++HM V I GA+ M++HGL SS L Y+R H+R + G Sbjct: 288 YPSVSHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLSCLANSNYERTHSRIMILSQG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYS Sbjct: 348 LQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 L+++ +G S + +K RE +++ PI +L++ Sbjct: 408 LYMFTTTQWG-SLTHHINSMKPSFTRENTLMFLHLSPILLLSL 449 >gi|281188431|gb|ADA55610.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188501|gb|ADA55675.1| NADH dehydrogenase subunit 4 [Pan paniscus] Length = 459 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 134/395 (33%), Positives = 219/395 (55%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPPSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + +I+ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTLGSLNIL- 177 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPL-TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP T +GE V+++ F SN +L F ++++ALYSL+++ Sbjct: 356 AFWWLLASLANLALPPTINLLGELSVLVTSFSWSNITLLLTGFNMLITALYSLYMFTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G S + +K RE +++ PI +L++ Sbjct: 416 WG-SLTHHINSMKPSFTRENTLMFMHLSPILLLSL 449 >gi|60257801|gb|AAX15688.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] Length = 452 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 130/377 (34%), Positives = 212/377 (56%), Gaps = 11/377 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG----AFLSLDMLLF 137 D +S+ L VL+ +L P +++S + + + Y F+ + + G AFL+ D+LLF Sbjct: 58 DFMSVALTVLSIWLLPLMLVASQQHMVNEAKFYQRVFIGCQVFLTGGLVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTMVGSLPLLVCLLGQ-YQLSGSLALD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L +SK + I +W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LMFVGVSKGEYIINFW-WLGCVVAFLVKLPLYGTHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG IR + L+ ++ VI L+L +I + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGMIR-VSYLWGSSALVSGEVILALALWGMISMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 G+ +G G GAM M++HGLVSS LF Y+R HTR++ GL+ P Sbjct: 295 VGGVMTGTAWGYNGAMILMIAHGLVSSCLFSLANSWYERGHTRNLIGSRGLIMLFPLIGF 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP GE + +++V+ S S G VL+A YSL++Y +G Sbjct: 355 SWLISSLMNLALPPAINLFGELVAMVAVYNWSVYSVAFMSLGAVLTAGYSLYMYGMSQWG 414 Query: 435 VSKCEKVQQLKDLSLRE 451 + + + L ++ RE Sbjct: 415 -NVMKGYKNLYIITSRE 430 >gi|83415386|gb|ABC17887.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|157367450|gb|ABV45584.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|157367506|gb|ABV45636.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|157367574|gb|ABV45678.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|157367588|gb|ABV45691.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|157367602|gb|ABV45704.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|157367616|gb|ABV45717.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|157367630|gb|ABV45730.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|157367658|gb|ABV45756.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|157367672|gb|ABV45769.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|157367686|gb|ABV45782.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|157367700|gb|ABV45795.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] Length = 455 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 201/383 (52%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++LT +L P +++S + + Y+ ++L+ +I F + D++L Sbjct: 58 LDSLSTPLLILTIWLLPLMLIASQSHLSSGSTFQKKSYITTIILLQVSLIMTFAATDLIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FE +LIP +II WG ER+ A F YT GS+ +L ++++ + T + Sbjct: 118 LYIMFETTLIPTMIIITRWGNQLERLNAGSYFLFYTLVGSLPLLVTLMLI---QNTLGSL 174 Query: 196 DLYAMSKFPFSIQ-YW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +L + SI W +W+ +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 NLMMLPYLAKSINNLWSTNMLWLTCIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL + + P + LSL ++ S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMLRITILLDPLTTHMYYPFLM-LSLWGMVMTSSICLRQTDMKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V I I GA+ M++HGL SS LF Y+R+H+R + GL +P Sbjct: 294 MALVIIAIMLQTPWSFMGALALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++ NM P T IGE L+I + F SN V+++ +Y+L + Sbjct: 354 LMATWWLLASLINMAPPPTINLIGELLIITTSFSWSNLTIFPMGLNVLITTMYTLHMMTT 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G + +K RE Sbjct: 414 TQRG-KTSHHAKSIKPSFTRENT 435 >gi|81230411|ref|YP_398763.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|93140471|sp|Q38PR3|NU4M_MAMPR RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|75914860|gb|ABA29793.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] Length = 455 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 201/383 (52%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++LT +L P +++S + + Y+ ++L+ +I F + D++L Sbjct: 58 LDSLSTPLLILTIWLLPLMLIASQSHLSSGSTFQKKSYITTIILLQVSLIMTFAATDLIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FE +LIP +II WG ER+ A F YT GS+ +L ++++ + T + Sbjct: 118 LYIMFETTLIPTMIIITRWGNQLERLNAGSYFLFYTLVGSLPLLVTLMLI---QNTLGSL 174 Query: 196 DLYAMSKFPFSIQ-YW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +L + SI W +W+ +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 NLMMLPYLAKSINNLWSTNMLWLTCIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL + + P + LSL ++ S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMLRITILLDPLTTHMYYPFLM-LSLWGMVMTSSICLRQTDMKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V I I GA+ M++HGL SS LF Y+R+H+R + GL +P Sbjct: 294 MALVIIAIMLQTPWSFMGALALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++ NM P T IGE L+I + F SN V+++ +Y+L + Sbjct: 354 LMATWWLLASLINMAPPPTINLIGELLIITTSFSWSNLTIFPMGLNVLITTMYTLHMMTT 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G + +K RE Sbjct: 414 TQRG-KTSHHAKSIKPSFTRENT 435 >gi|226464020|ref|YP_002734973.1| NADH dehydrogenase subunit 4 [Chamaeleo calcaricarens] gi|124055130|gb|ABM89743.1| NADH dehydrogenase subunit 4 [Chamaeleo calcaricarens] Length = 450 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 124/379 (32%), Positives = 207/379 (54%), Gaps = 12/379 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIGAFLSLD 133 +L +D IS L+ L+ +L P IL+S + + R +++ L++++I A S + Sbjct: 55 YLSIDQISAPLLTLSYWLLPIAILASQNHLKYTTKTQTRMFLMCLTTLQTLLILALSSTN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LF+I FEA+LIP +II WG ER+ A F YT S+ +L A+++M + Sbjct: 115 IILFFIMFEATLIPTMMIITRWGNQKERLTAGMYFMFYTLISSMPLLIALLMMNHQMDNL 174 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + + + P +I W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 175 NTMLTPMTTCKPNTIT---WLACTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAILL 231 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + P+ L + P I ++L +I SL+ + Q D+K LIAYSS++HMG Sbjct: 232 KLGGYGMMR-ISPMLCLTKTLYYPFII-MALWGMIMTSLICLRQPDLKSLIAYSSVSHMG 289 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V S + GAM M++HG+ SS LF ++Y+R HTR + G+ +P Sbjct: 290 LVVTATMIQTPSSLSGAMILMVAHGITSSMLFCLANMMYERTHTRTLAMMQGIQTTLPLA 349 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ + NM +P T +GE ++ ++F S +L ++A+YS+ ++ + Sbjct: 350 TAFWLIANLTNMAIPPTINLMGEIMITTTMFNWSPPTLILTGSAATITAIYSMHMFSAIQ 409 Query: 433 FGVSKCEKVQQLKDLSLRE 451 G K +K + RE Sbjct: 410 QG--KTQKDMMISPPQTRE 426 >gi|157092676|gb|ABV22517.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|228014872|gb|ACP50289.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|228014886|gb|ACP50302.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|228015026|gb|ACP50432.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|228015040|gb|ACP50445.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|291464875|gb|ADE05948.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|296041286|gb|ADG85630.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|296041300|gb|ADG85643.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] Length = 459 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 136/395 (34%), Positives = 216/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMMLASQNHMKKENMMHQKLYISMLISLQILLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +++ P W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 L-SLTTHPLP-STWSNTILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRVSIILDPLTKSLAYPFII-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 296 LVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP +GE ++M+ F SN +L + +V++ +YS+++ Sbjct: 356 ATWWLLASLANLALPPLINLMGELFIVMATFSWSNPSIILMATNIVITGMYSMYMIITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 416 RG-KPTSHMNNLQPSHTRELTLMALHIIPLMLLTI 449 >gi|12484239|gb|AAG54024.1|AF224601_4 NADH dehydrogenase subunit 4 [Propithecus verreauxi verreauxi] gi|12484249|gb|AAG54032.1|AF224603_4 NADH dehydrogenase subunit 4 [Propithecus verreauxi verreauxi] gi|12484254|gb|AAG54036.1|AF224604_4 NADH dehydrogenase subunit 4 [Propithecus verreauxi verreauxi] gi|12484274|gb|AAG54052.1|AF224608_4 NADH dehydrogenase subunit 4 [Propithecus deckenii coronatus] gi|12484279|gb|AAG54056.1|AF224609_4 NADH dehydrogenase subunit 4 [Propithecus deckenii coronatus] gi|12484284|gb|AAG54060.1|AF224610_4 NADH dehydrogenase subunit 4 [Propithecus deckenii coronatus] Length = 459 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 202/359 (56%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S +++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQYHLKKEPWLRKKSYLSMLISLQVFLVMTFTANELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHL---QNSMGSLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L M+ + P S W +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA Sbjct: 176 LLTMNFWLKELPNS---WSSNLLWMACIMAFMVKMPLYGFHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITIILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPSINLIGELFVMMASFSWSNISIILMGLNMLITALYSLYM 410 >gi|108793318|ref|YP_637019.1| NADH dehydrogenase subunit 4 [Phascolarctos cinereus] gi|94481169|dbj|BAE93976.1| NADH dehydrogenase subunit 4 [Phascolarctos cinereus] Length = 459 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 127/364 (34%), Positives = 194/364 (53%), Gaps = 7/364 (1%) Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYA 163 K + Y+ ++L+ +I A + ++++FYI FE +LIP +II WG +ER+ A Sbjct: 86 KESMNRKKAYLTTLIILQLSLITALSASELMMFYIMFETTLIPTLIIITRWGNQNERLNA 145 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAI 221 YT GSI +L A++ + + + I+ + MS P +W A +F + Sbjct: 146 GLYLLFYTLTGSIPLLIALLFLYNKLGSLHILAMTIMSTTLKPSYSNSILWYACMTAFMV 205 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG +R + PL + + P I L Sbjct: 206 KMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIMRMTVFTQPLTTNLYYPFII-L 264 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 SL ++ S + + QTD+K LIAYSSI+HM V I GA M++HGL SS Sbjct: 265 SLWGMVMTSFICLRQTDLKSLIAYSSISHMALVIIATLMQSPLSFMGATALMIAHGLTSS 324 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 LF Y+R+++R + GL +P ++ T+AN+ LP T F+ E LVI S Sbjct: 325 MLFGLANTNYERINSRTMILARGLQTILPLTCTWWILATLANLALPPTINFLCELLVITS 384 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM--VYPIA 459 F SN +L +++ALYSL + G Q +K S RE + ++ I Sbjct: 385 SFSWSNFSIILLGINTIITALYSLHMLTTTQRG-KPTYHTQTIKPTSTREHTLMILHLIP 443 Query: 460 VLTV 463 +LT+ Sbjct: 444 LLTI 447 >gi|2829030|gb|AAD10069.1| NADH ubiquinone oxidoreductase subunit 4 [Myxocyprinus asiaticus] Length = 460 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 202/362 (55%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + Sbjct: 54 NMYLATDPLSTPLLVLTCWLLPLMILASQNHINPEPISRQRLYITLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEMIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQS 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++Q W W +F +K+P++ H WLP AHV+ P AGS+ Sbjct: 172 TGTLSMLILQYSQPCTLQSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEPPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GG G IR ++ L PL+ + P I L+L II + + Q D+K LIAYS Sbjct: 232 LAAVLLKLGGCGMIRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQADLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMALVAGGILVQTPWGFTGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P AV V ++N+ LP +GE ++I ++F S L G +++A YSL+ Sbjct: 351 MIFPLTAVWWFVANLSNLALPPLPNLMGELMIITTMFNWSPWTITLTGTGTLITAGYSLY 410 Query: 427 LY 428 L+ Sbjct: 411 LF 412 >gi|327492663|ref|YP_004347557.1| NADH dehydrogenase subunit 4 [Sphoeroides annulatus] gi|327392318|dbj|BAK09765.1| NADH dehydrogenase subunit 4 [Sphoeroides annulatus] Length = 460 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 203/364 (55%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F + ++ D +S L++L+ +L P IL+S N + I+ L L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLILSCWLLPLMILASQNHTAHEPINRQRMYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 ASTEMIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLLQ-N 170 Query: 189 KKTSSIIDLYAMSKFP----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 S + + P ++ + W W +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 SNGSLSLLTLLHTSTPQLSTYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGMMRILVTLEPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P A + ++AN+ LP +GE ++I S+F S L G +++A YS Sbjct: 349 MQMALPLMAAWWFIASLANLALPPLPNLMGELMIITSMFNWSWWTIALTGLGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|325126954|gb|ADY85987.1| NADH dehydrogenase subunit 4 [Epinephelus lanceolatus] Length = 460 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 200/358 (55%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + +M Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHTATEPINRQRMYISLLTSLQIFLILAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYIMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNYTGTLS 176 Query: 194 IIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L S ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LFTLPFSSPLHLSSYADKLW-WTACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL P + F +L +I S + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMIVMLDPLTKNLSYPFLIF-ALWGVIMTSSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQIILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S VL G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPFPNLMGELMIITSLFNWSWWTIVLTGGGTLITASYSLYMF 412 >gi|157367644|gb|ABV45743.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] Length = 455 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 201/383 (52%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++LT +L P +++S + + Y+ ++L+ +I F + D++L Sbjct: 58 LDSLSTPLLILTIWLLPLMLIASQSHLSSGSTFQKKSYITTIILLQVSLIMTFAATDLIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FE +LIP +II WG ER+ A F YT GS+ +L ++++ + T + Sbjct: 118 LYIMFETTLIPTMIIITRWGNQLERLNAGSYFLFYTLVGSLPLLVTLMLI---QNTLGSL 174 Query: 196 DLYAMSKFPFSIQ-YW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +L + SI W +W+ +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 NLMMLPYLAKSINNLWSTNMLWLTCIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL + + P + LSL ++ S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMLRITILLDPLTTHMYYPFLM-LSLWGMVMTSSICLRQTDMKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V I I GA+ M++HGL SS LF Y+R+H+R + GL +P Sbjct: 294 MALVIIAIMLQTPWSFMGALALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++ NM P T IGE L+I + F SN V+++ +Y+L + Sbjct: 354 LMATWWLLASLINMAPPPTINLIGELLIITTSFSWSNLTIFPMGLNVLITTMYTLHMMTT 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G + +K RE Sbjct: 414 TQRG-KTSHHAKSIKPSFTRENT 435 >gi|189492676|gb|ACE01383.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 129/379 (34%), Positives = 207/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + +I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLI 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|95104579|gb|ABF51547.1| NADH dehydrogenase subunit 4 [Colobus guereza matschiei] Length = 459 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 137/439 (31%), Positives = 230/439 (52%), Gaps = 19/439 (4%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+F I+Y S +L D ++ L++LT + P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNF--------INY--STYLSSDPLTTPLLMLTAWFLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FEA+LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFEATLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTTQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLQLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRTMMLSRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHVTIMLTGLNMLITALYSLYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMVYPIAVLTVFFGIYP 469 E +++ +F + P Sbjct: 433 ENMLMFMHLSPIIFLSLNP 451 >gi|332887108|dbj|BAK23208.1| NADH dehydrogenase subunit 4 [Rasbora vaterifloris] Length = 460 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 133/390 (34%), Positives = 208/390 (53%), Gaps = 15/390 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S +VLT +L P IL+S I R Y+ L++++I AF + Sbjct: 54 NHYMATDPLSTPFLVLTCWLLPLMILASQNHINPEPINRQRLYISLLTCLQTLLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLAGSLPLLIALLILQQTAG 173 Query: 191 TSSIIDL-YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L YA P ++ W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 174 TLSMLILQYAQ---PLTLDTWGYSIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA I+LK+GGYG +R ++ L + P I L+L II + + QTD+K LIAY Sbjct: 231 VLAAILLKLGGYGMMRMMIVLDAFNKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G GA+ M++HGL SS LF Y+R+H+R + GL Sbjct: 290 SSVGHMGLVAGGILIQTTWGFSGAIALMVAHGLTSSMLFCLANTTYERVHSRTMILIRGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P A + +AN+ LP +GE +I ++F S ++ G +++A YSL Sbjct: 350 QMIFPLAATWWFIANLANLALPPLPNLVGELTIITTLFSWSPWTIMITGTGTLITASYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +++ G + L RE ++ Sbjct: 410 YMFLMTQRG-QMPSHIMNLSPYHTREHLLM 438 >gi|288904157|ref|YP_003434425.1| NADH dehydrogenase subunit 4 [Beryx mollis] gi|115279598|gb|ABI85288.1| NADH dehydrogenase subunit 4 [Beryx mollis] Length = 460 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 205/358 (57%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + Q R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHMTPEPQNRQRMYITLLTSLQVFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTLS 176 Query: 194 IIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L YA + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MLTLQYAKPLQLASYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMVMLDPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMVLARGLQMVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLLLTGTGTLITAGYSLYMF 412 >gi|12484269|gb|AAG54048.1|AF224607_4 NADH dehydrogenase subunit 4 [Propithecus deckenii deckenii] Length = 459 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 202/359 (56%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S +++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQYHLKKEPWLRKKSYLSMLISLQVFLVMTFTANELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHL---QNSMGSLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L M+ + P S W +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA Sbjct: 176 LLTMNFWLKELPNS---WSSNLLWMACIMAFMVKMPLYGFHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITIILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPSINLIGELFVMMASFSWSNISIILMGLNMLITALYSLYM 410 >gi|29788193|dbj|BAC75514.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] Length = 452 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 127/377 (33%), Positives = 212/377 (56%), Gaps = 11/377 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ LV+L+ +L P +++S + + ++ R ++I ++L S ++ AFL+ D+LLF Sbjct: 58 DFMSVALVILSVWLLPLMLIASQQHMAKDTGLYQRIFIICQVILTSALVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F+ YT GS+ +L +V ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFYTMVGSLPLLICLVGQ-YKMMGSLSLD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L K + W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LILGGSYKGEYFTNLW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + ++ V+F L+L ++ + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGLMRISYA-WGASALLSGEVVFALALWGMVVMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI +G G GAM M++HGLVSS LF Y+R H+R++ G++ P Sbjct: 295 VGGIMTGTTWGYNGAMILMIAHGLVSSCLFSLANYWYERSHSRNLLGSRGMIILFPLMGA 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + ++ N+ LP T GE + +++V+ S + G VL+A YSL+++ +G Sbjct: 355 GWFIASLMNLALPPTINLFGELVAMVAVYNWSMFSVIFMGVGAVLTAAYSLYMFGMSQWG 414 Query: 435 VSKCEKVQQLKDLSLRE 451 E + L ++ RE Sbjct: 415 -EVLENYKNLHVMTSRE 430 >gi|31095635|gb|AAP43115.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi nobbi] Length = 456 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 125/374 (33%), Positives = 203/374 (54%), Gaps = 18/374 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYANKF----MAMDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 +L +++ A + ++LLF+I FEA+LIP V+I WG ER+ A Y F YT GS+ + Sbjct: 102 ILTALLTIALSTTNLLLFFISFEATLIPALVLITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI----AFFCSFAIKIPMFPFHTWLPN 234 L +++VM ++ ++L S F + A +F +K+P++ H WLP Sbjct: 162 LMSLLVM---NNSTDHLNLMMFSTFKLNTTNLTNNTLWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR L P Y+ P+I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGVIRISPILQPTEKLYY-PLIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMMAHGLTSSLMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S + + Sbjct: 337 NSRTLITMRGLQKTSSLLTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFSMPA 396 Query: 415 FGVVLSALYSLWLY 428 G VL+A Y++ ++ Sbjct: 397 IGTVLTAAYTMHMF 410 >gi|30142186|gb|AAP13865.1| NADH dehydrogenase subunit 4 [Etheostoma derivativum] Length = 461 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTASEPLTRQRMYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLIIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSSGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L F + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITLQFSDPSQLTSFGDKLW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL P I F +L +I V + Q D+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIVIMLDPLTKDLSYPFIIF-ALWGVIMTGSVCLRQADLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVIGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S L G++++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELMIVSSLFNWSWWTLALTGAGMLITASYSLYMF 412 >gi|317123877|ref|YP_004097989.1| proton-translocating NADH-quinone oxidoreductase, chain M [Intrasporangium calvum DSM 43043] gi|315587965|gb|ADU47262.1| proton-translocating NADH-quinone oxidoreductase, chain M [Intrasporangium calvum DSM 43043] Length = 502 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 112/306 (36%), Positives = 177/306 (57%), Gaps = 8/306 (2%) Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE-----RIYAAYKFF 168 Y+ A +++E+ + FL+ D +LF+I FE LIPM+++I +G R AA +F Sbjct: 104 YLGAIMLVETGALATFLARDAILFFIAFEVVLIPMWLLIRRFGDDHVPDETRADAAGRFV 163 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM--SKFPFSIQYWMWIAFFCSFAIKIPMF 226 L+T FGS ML I+++ + TS + L M + S+Q + A+K+P++ Sbjct: 164 LFTVFGSTLMLIGILLLVAHQGTSDLEALARMHGAGLAHSLQVAIAAILLTGLAVKVPLW 223 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 P HTWLP+AH APTAGSV LA ++LKMG YG +R + P +PV+ L + Sbjct: 224 PLHTWLPSAHTIAPTAGSVLLAAVLLKMGTYGIVRVAVAAVPDGVIALSPVLAALGAVGT 283 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I+ L +V+ D+K+LIAYSS+AHMG++ I + SG +G++ A+F ++HG+V++ LFF Sbjct: 284 IWGGLACLVERDLKRLIAYSSVAHMGFIGIALASGSHTGLQAALFANIAHGIVAALLFFL 343 Query: 347 VGVIYDRLHTRDIFAYG-GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 VG + ++ + D+ L PR+ V + A +GLPG F GEFL + + + Sbjct: 344 VGDLKEQWGSADLSTPRVALRDRAPRFGVAFLFGLAAALGLPGLISFWGEFLSLYAAWSP 403 Query: 406 SNTVAV 411 + V V Sbjct: 404 AEGVNV 409 >gi|116733804|gb|ABK19959.1| NADH dehydrogenase subunit 4 [Ichthyomyzon castaneus] Length = 342 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 121/299 (40%), Positives = 171/299 (57%), Gaps = 12/299 (4%) Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L FYI FEA+LIP ++I WG ER+ A F YT S+ +L A++++ + + +S Sbjct: 1 LTFYIAFEATLIPTLLVITRWGNQKERLTAGLYFLFYTLSASLPLLIALIMV--QTRCNS 58 Query: 194 II-------DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + +L +S +S W W+A F +F IK+P++ FH WLP AHV+AP AGS+ Sbjct: 59 LSMHIIPLSNLTLLSNMSWSETMW-WVACFLAFLIKMPLYIFHLWLPKAHVEAPIAGSMI 117 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG IR PL P I +++ +I +S + + QTD+K +IAYS Sbjct: 118 LAAILLKLGGYGMIRMSSLFVPLTKDLVIPFIV-IAVWGMIVSSSICLRQTDLKSMIAYS 176 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 SI HM V GIFS GA+ M++HGLVSS LF + Y+R HTR IF GL Sbjct: 177 SINHMNLVVAGIFSMTPWAWSGALAMMIAHGLVSSGLFCLANITYERTHTRSIFMNRGLK 236 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P + ++ T ANM LP F+ E L+I S+F SN +L + L+ L+SL Sbjct: 237 TLFPLMSFWWLMMTFANMALPPFPNFMAEILIITSMFNWSNWTILLLGLSMTLTTLFSL 295 >gi|315142646|gb|ADT82565.1| NADH dehydrogenase subunit 4L [Nomascus leucogenys] Length = 458 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 122/350 (34%), Positives = 191/350 (54%), Gaps = 9/350 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYI FE +LIP +II WG ER+ A F Y Sbjct: 92 KLYLSMLITLQVSLIMTFTATELMMFYILFETTLIPTLIIITRWGNQPERLNAGSYFLFY 151 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L S P W MW+A +F +K+P++ Sbjct: 152 TLVGSLPLLIALIHTHNTLGSLNIMLLTLSS--PSLANSWSNNIMWLACVMAFMVKMPLY 209 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 210 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLMLSLWGM 268 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSS++HM V I GA M++HGL SS LF Sbjct: 269 IMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFTGATVLMIAHGLTSSLLFCL 328 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A + ++AN+ LP T +GE V+M+ F + Sbjct: 329 ANSNYERTHSRTMILSRGLQILLPLMAFWWLTASLANLALPPTINLLGELFVLMASFSWA 388 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 NT L ++++ALYSL+++ G + ++ +K RE +++ Sbjct: 389 NTTIALTGLNMLITALYSLYMFITTQRG-TLTHHIKNMKPSLTRENMLMF 437 >gi|212725574|ref|YP_002317320.1| NADH dehydrogenase subunit 4 [Culaea inconstans] gi|212374491|dbj|BAG83062.1| NADH dehydrogenase subunit 4 [Culaea inconstans] Length = 460 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 198/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P I++S + R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSSPLLVLTCWLLPLMIIASQNHTKNEPYNRQRAYITLLTSLQIFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYVMFEATLIPTLVIITRWGNQAERLNAGVYFLFYTLAGSLPLLMALLLLQNSTGTL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + F F+ + W W + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTIQYTDPFQLFTFADKLW-WASCLLAFLVKMPLYGIHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR + L L P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMIRTINMLESLTKDLSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V I + GA+ M++HGL SSALF Y+R H R + GL + Sbjct: 294 HMGLVVAAILIQTPWSLSGALVLMIAHGLASSALFCLANTNYERTHNRTLLLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+GLP +GE ++I S+F+ S L G +++ YSL+++ Sbjct: 354 PLMTTWWFIASLANLGLPPLPNLMGELMIITSLFKWSWWTLALTGSGTLITVSYSLYMF 412 >gi|166093223|ref|YP_001654995.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] gi|149193550|gb|ABR21248.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] gi|149193578|gb|ABR21274.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] gi|149193592|gb|ABR21287.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] gi|149193606|gb|ABR21300.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] gi|149193635|gb|ABR21327.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] gi|149193650|gb|ABR21341.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] gi|149193665|gb|ABR21355.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] gi|149193681|gb|ABR21370.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] Length = 452 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 207/370 (55%), Gaps = 18/370 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF-----REYMIAFLVLESMVIGAFLSLDML 135 +D I+ L +L+ +L P IL++ ++I + R ++ +L++ ++ F + D++ Sbjct: 59 LDPITTPLAILSAWLLPLMILAN-QNIAASEPTGRKRMFLTTCTMLQTTLLLTFTTTDLI 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS-- 192 +FY FE +L+P ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 118 MFYALFETTLVPTLILITRWGAQTERLNAGTYFIFYTLAGSLPLLVALLYIHSTNNHTLI 177 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I+ ++ + FP ++ MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 178 PILTMHQSATFPTNL---MWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 234 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG IR L L P P I L+L +I SL+ + QTD+K +IAYSS++HMG Sbjct: 235 KLGGYGIIRLTLILMPTTQTMCFPFIV-LALWGMIMTSLICLRQTDLKSIIAYSSVSHMG 293 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 VT + GAM M++HGL SS LF Y+R HTR + GL +P Sbjct: 294 LVTAASLIQTPWSIHGAMLLMIAHGLTSSMLFCLANTNYERTHTRTLILVRGLQLALPLM 353 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ + NM LP T +GE ++I+++F + T VL +++A+YSL + Sbjct: 354 TTWWLLSNLMNMALPPTINLLGELMIIITLFNWNMTTIVLTGSATLITAMYSL-----HI 408 Query: 433 FGVSKCEKVQ 442 F ++ K+Q Sbjct: 409 FLTTQQNKLQ 418 >gi|256427247|ref|YP_003127014.1| NADH dehydrogenase subunit 4 [Oplegnathus punctatus] gi|256353399|dbj|BAH97905.1| NADH dehydrogenase subunit 4 [Oplegnathus punctatus] Length = 460 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 200/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQIFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFETTLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSSG 173 Query: 191 TSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTIQYSNPLLLTTYADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMTMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLILARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLLLTGAGTLITASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|108742831|gb|ABG02009.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 131/393 (33%), Positives = 211/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +S+ S+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MIMLSQNLPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP IGE VIM+ F SN ++ V+++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPFINLIGELFVIMTSFSWSNLTIIMTGLNVLITALYSLYMLTMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +LT+ Sbjct: 418 -KFTSHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|327492789|ref|YP_004347674.1| NADH dehydrogenase subunit 4 [Pelagocephalus marki] gi|327392640|dbj|BAK10064.1| NADH dehydrogenase subunit 4 [Pelagocephalus marki] Length = 460 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 136/361 (37%), Positives = 206/361 (57%), Gaps = 12/361 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAF 129 F S L D +S L+VL+ +L P IL+S + N + I+ L+ L+ +I AF Sbjct: 52 FLSPLLATDPLSTPLLVLSCWLLPLMILASQNHMAHEPINRQRLYISLLISLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + DM++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 AATDMIMFYLMFEATLIPTLLLITRWGNQTERLNAGTYFLFYTLTGSLPLLVALLLLQDS 171 Query: 189 KKTSSIIDLYAMSKFP----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 ++ S+ L A S P +S + W W +F +K+P++ H WLP AHV+AP AGS Sbjct: 172 NESLSLFTL-AHSTTPQLSTYSNKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L+ L P+ + P I L+L +I + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMMRILVTLEPITKELSYPFII-LALWGVIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R I G Sbjct: 289 YSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTILLTRG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP +GE ++I S+F S L G +++A YS Sbjct: 349 LQMALPLMAAWWLLASLANLALPPLPNLMGELMIITSLFNWSPWTIALTGLGTLITAGYS 408 Query: 425 L 425 L Sbjct: 409 L 409 >gi|56548743|ref|YP_161178.1| NADH dehydrogenase subunit 4 [Metachirus nudicaudatus] gi|56398472|emb|CAG26351.1| NADH dehydrogenase subunit 4 [Metachirus nudicaudatus] Length = 459 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 125/343 (36%), Positives = 192/343 (55%), Gaps = 12/343 (3%) Query: 94 FLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 +L P I++S + + R+ Y+ ++L+S +I AF S ++++FYI FE +LIP Sbjct: 71 WLLPLMIMASQNHLNKESLLRKKLYLTMMIILQSSLIIAFSSSELIMFYILFETTLIPTL 130 Query: 150 VIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI---IDLYAMSKFPF 205 +II WG +ER+ A F YT GS+ +L A++ M K S+ ++ +++ Sbjct: 131 IIITRWGNQNERLNAGIYFLFYTLVGSLPLLVALLTM--NKNLGSLHILMNSLLINQLNN 188 Query: 206 SIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLL 264 ++ M W A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG IR Sbjct: 189 TLSSSMLWYACMTAFMIKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITS 248 Query: 265 PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS 324 P+ F P I LS+ +I S + M QTD+K LIAYSS++HM V I + Sbjct: 249 LTEPMTIHLFYPFII-LSMWGMIMTSSICMRQTDLKSLIAYSSVSHMALVIIAALIQSTT 307 Query: 325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM 384 GA M++HGL SS LF Y+R+H+R + GL +P + ++AN+ Sbjct: 308 SFMGATTLMVAHGLTSSMLFCLANTNYERIHSRTMILARGLQLILPLMNTWWLTASLANL 367 Query: 385 GLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 LP T +GE ++I + F SN +L V++ALYSL++ Sbjct: 368 ALPPTINLLGELMIITASFSWSNFSILLLGLNTVITALYSLYM 410 >gi|2290488|gb|AAD04704.1| NADH dehydrogenase subunit 4 [Trachypithecus poliocephalus] Length = 459 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 135/400 (33%), Positives = 215/400 (53%), Gaps = 15/400 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-EN---FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+ LT +L P I++S + EN + Y+ + L+ +I F+S Sbjct: 53 STYLSFDPLSTPLLTLTAWLLPLMIMASQYHLHNENPSRKKLYLSMMIFLQISLIMTFMS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L +++ + Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLAGSLPLLI-MLMFTYNNM 171 Query: 191 TSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S I L ++ + + W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLNIVLLTLTAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L PL ++Y A LSL +I S + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMRLTSILNPL-TEYMAYPFLMLSLWGMIMTSSTCLRQTDLKALIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVITASLIQTPWSFTGAIILMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A V + N+ LP T IGE LV+ ++F S+ +L ++++ALYSL++ Sbjct: 351 LLPLMASWWFVANLTNLALPPTINLIGELLVMATLFSWSHVTIMLTGLNMLITALYSLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + +K RE +++ PI +L++ Sbjct: 411 FITTQRG-TLTSHIMNMKPSFTRENMLMFMHISPIILLSL 449 >gi|315142674|gb|ADT82591.1| NADH dehydrogenase subunit 4L [Nomascus siki] Length = 458 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 122/350 (34%), Positives = 191/350 (54%), Gaps = 9/350 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYI FE +LIP +II WG ER+ A F Y Sbjct: 92 KLYLSMLITLQVSLIMTFTATELMMFYILFETTLIPTLIIITRWGNQPERLNAGSYFLFY 151 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L S P W MW+A +F +K+P++ Sbjct: 152 TLVGSLPLLIALIHTHNTLGSLNIMLLTLSS--PSLANSWSNNIMWLACVMAFMVKMPLY 209 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 210 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLMLSLWGM 268 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSS++HM V I GA M++HGL SS LF Sbjct: 269 IMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFAGATVLMVAHGLTSSLLFCL 328 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A + ++AN+ LP T +GE V+M+ F + Sbjct: 329 ANSNYERTHSRTMILSRGLQILLPLMAFWWLTASLANLALPPTINLLGELFVLMASFSWA 388 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 NT L ++++ALYSL+++ G + ++ +K RE +++ Sbjct: 389 NTTIALTGLNMLITALYSLYMFITTQRG-TLTHHIKNMKPSLTRENMLMF 437 >gi|160426639|gb|ABX40271.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 199/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++ N+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLTNLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL ++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLHMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|165932475|ref|YP_001650732.1| NADH dehydrogenase subunit 4 [Eurypegasus draconis] gi|154758802|dbj|BAF74947.1| NADH dehydrogenase subunit 4 [Eurypegasus draconis] Length = 460 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 125/358 (34%), Positives = 202/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VL+ +L P IL+S + R Y+ + L+ +I AF + ++ Sbjct: 57 MATDPLSSPLLVLSCWLLPLMILASQNHTAGEPEGRQRMYITLLISLQMFLILAFGATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FE++LIP V+I WG +ER+ A F YT GS+ +L A+++M T Sbjct: 117 IMFYVMFESTLIPTLVLITRWGNQTERLKAGTYFLFYTLAGSLPLLVALLLMQNSTGTLC 176 Query: 194 IIDL-YAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L Y+ + S + W W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQYSTMSYDLSTGDKLW-WLACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L P+ + P I L+L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIMTMLEPMTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAAGILIQTPWGATGALILMIAHGLTSSALFCLANTNYERTHSRTMILARGLQTILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP + E ++I S+F S ++ G +++A YSL+++ Sbjct: 355 LMTTWWFISSLANLALPPLPNLMAEIMIITSLFNWSYFTIIITGAGTLITAGYSLYMF 412 >gi|108742982|gb|ABG02130.1| NADH dehydrogenase subunit 4 [Microcebus sp. ANT5.1] gi|145567087|gb|ABP81891.1| NADH dehydrogenase subunit 4 [Microcebus rufus] gi|145567092|gb|ABP81895.1| NADH dehydrogenase subunit 4 [Microcebus rufus] gi|145567107|gb|ABP81907.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 129/394 (32%), Positives = 211/394 (53%), Gaps = 17/394 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLIFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + +K S Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QKSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP IGE VIM+ F SN ++ F ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNMLITALYSLYMLTMTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLT 462 G + +K RE + + P+ +LT Sbjct: 416 RG-KFTYHIHNIKPSYTRENTLMSMHMLPLIMLT 448 >gi|325126826|ref|YP_004285966.1| NADH dehydrogenase subunit 4 [Pennahia argentata] gi|324023000|gb|ADY15563.1| NADH dehydrogenase subunit 4 [Pennahia argentata] Length = 460 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 128/365 (35%), Positives = 201/365 (55%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S ++ D +S L+VLT +L P I++S R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLVLTCWLLPLMIIASQNHTAPEPINRQRTYITLLASLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 SATEMIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALILL--Q 169 Query: 189 KKTSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 ++ L P F+ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NSAGTLSLLTLQLSSPAQLVTFADKLW-WAGCLLAFLVKMPLYGIHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LI Sbjct: 229 SMILAAVLLKLGGYGMMRILPMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVGHMGLVVGGILIQTPWGFTGALVLMIAHGLTSSALFCLANTNYERTHSRTMILAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A + ++AN+ LP F+GE +++ S+F S ++ G +++A Y Sbjct: 348 GLQVALPLMATWWFIASIANLALPPLPNFLGELMIMTSLFNWSWWTILMTGAGAIITASY 407 Query: 424 SLWLY 428 +L+++ Sbjct: 408 TLYMF 412 >gi|149193620|gb|ABR21313.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] Length = 452 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 207/370 (55%), Gaps = 18/370 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF-----REYMIAFLVLESMVIGAFLSLDML 135 +D I+ L +L+ +L P IL++ ++I + R ++ +L++ ++ F + D++ Sbjct: 59 LDPITTPLAILSAWLLPLMILAN-QNIAASEPTGRKRMFLTTCTMLQTTLLLTFTTTDLI 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS-- 192 +FY FE +L+P ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 118 MFYALFETTLVPTLILITRWGAQTERLNAGTYFIFYTLAGSLPLLVALLYIHSTNNHTLI 177 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I+ ++ + FP ++ MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 178 PILTMHQSATFPTNL---MWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 234 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG IR L L P P I L+L +I SL+ + QTD+K +IAYSS++HMG Sbjct: 235 KLGGYGIIRLTLILMPTTQTMCFPFIV-LALWGMIMTSLICLRQTDLKSIIAYSSVSHMG 293 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 VT + GAM M++HGL SS LF Y+R HTR + GL +P Sbjct: 294 LVTAASLIQTPWSIHGAMLLMIAHGLTSSMLFCLANTNYERTHTRTLILVRGLQLALPLM 353 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ + NM LP T +GE ++I+++F + T VL +++A+YSL + Sbjct: 354 TTWWLLSNLMNMALPPTINLLGELMIIITLFNWNMTTIVLTGSATLITAMYSL-----HI 408 Query: 433 FGVSKCEKVQ 442 F ++ K+Q Sbjct: 409 FLTTQQNKLQ 418 >gi|218157353|ref|YP_002364584.1| NADH dehydrogenase subunit 4 [Epinephelus lanceolatus] gi|215789147|gb|ACJ69596.1| NADH dehydrogenase subunit 4 [Epinephelus lanceolatus] Length = 460 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 200/358 (55%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + +M Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHTATEPINRQRMYISLLTSLQIFLILAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYIMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNYTGTLS 176 Query: 194 IIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L S ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LFTLPFSSPLHLSSYADKLW-WTACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL P + F +L +I S + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMIVMLDPLTKNLSYPFLIF-ALWGVIMTSSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQIILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S VL G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPFPNLMGELMIITSLFNWSWWTIVLTGGGTLITASYSLYMF 412 >gi|58045611|ref|YP_192923.1| NADH dehydrogenase subunit 4 [Bombina orientalis] gi|46242523|gb|AAS83377.1| NADH dehydrogenase subunit 4 [Bombina orientalis] Length = 459 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 131/402 (32%), Positives = 213/402 (52%), Gaps = 17/402 (4%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGA 128 +F ++ L +D +S L++L+ +L P I++S + R Y+ L+ +I A Sbjct: 50 HFTTHILSIDQLSSPLLILSCWLLPIMIIASQNHLATEPLNRQRTYITTLTSLQIALIVA 109 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + +++LFYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++ + Sbjct: 110 FSATELILFYITFEITLIPTLMLITRWGNQAERLNAGIYFLFYTLMGSLPLLVALLSL-- 167 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + ++ L P + W W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 168 QNSEGTLSTLLMQLNTPIMLTSWANKAWWLACLIAFMVKMPLYGGHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA I+LK+GGYG +R + L P + A L+L +I S + + QTD+K +I Sbjct: 228 SMVLAAILLKLGGYGIMRISM-LLPTSMNNLAYPFIILALWGVIMTSSICLRQTDLKSMI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GA+ M++HGLVSSALF Y+R H+R + Sbjct: 287 AYSSVSHMGLVIAAAMIQTPWSFSGAIVLMVAHGLVSSALFCLANTNYERTHSRTLLLSR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ +P ++ +ANM LP + +GE V++++F S +L G +L+A Y Sbjct: 347 GMQIILPLMGAWWLLSNLANMALPPSPNLMGELSVMVAMFDWSGWTILLTGSGTLLTAAY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVL 461 SL+++ G + + + L RE + + PIA L Sbjct: 407 SLYMFLMTQRGPTP-QHLTALNPTHTREHTLMLLHLLPIAPL 447 >gi|40805119|ref|NP_955688.1| NADH dehydrogenase subunit 4 [Nannospalax ehrenbergi] gi|40644202|emb|CAC95219.1| NADH dehydrogenase subunit 4 [Nannospalax ehrenbergi] Length = 458 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 120/324 (37%), Positives = 185/324 (57%), Gaps = 11/324 (3%) Query: 108 QENFREYMIAFL-VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAY 165 QEN+++ I+ L +L+ +I F + +++LFYI FEA+LIP +II WG +ER+ A Sbjct: 88 QENYKKMYISLLTLLQVFLIMTFTATELMLFYILFEATLIPTLIIITRWGNQTERLNAGL 147 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSIQYW----MWIAFFCSFA 220 F YT GSI +L +++ T ++L +S K P Q W +W+AF +F Sbjct: 148 YFLFYTLIGSIPLLISLINF---NNTFGTLNLVLLSLKQPALSQSWSNHILWLAFMLAFL 204 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L + ++ A Sbjct: 205 VKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRISI-LLDMVNKTMAYPFIM 263 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL ++ S + M QTD+K LIAYSS++HM V + + GA M++HGL S Sbjct: 264 LSLWGMVMTSSICMRQTDLKSLIAYSSVSHMALVIVAVMIQTPWSFMGATALMIAHGLTS 323 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S LF Y+R H+R + GL P V M+ ++AN+ LP + IGE L+I Sbjct: 324 SLLFCLANSNYERTHSRTMMLAQGLQTIFPLMGVWWMLGSLANLALPPSINLIGELLIIT 383 Query: 401 SVFQNSNTVAVLASFGVVLSALYS 424 S F SN ++ ++++A Y+ Sbjct: 384 SSFSWSNLSILMMGTNMIMTAAYT 407 >gi|226463968|ref|YP_002734925.1| NADH dehydrogenase subunit 4 [Chamaeleo zeylanicus] gi|124055074|gb|ABM89691.1| NADH dehydrogenase subunit 4 [Chamaeleo zeylanicus] Length = 449 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 124/379 (32%), Positives = 201/379 (53%), Gaps = 13/379 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL----SLD 133 +L +D IS L+ L+ +L P IL+S ++ FL + + S + Sbjct: 55 YLSIDQISAPLLTLSYWLLPIAILASQNHLKYTTEMQTRTFLTCLTTLQTLLTLALSSTN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LF+I FEA+LIP +II WG ER+ A F YT S+ +L A+++M ++ Sbjct: 115 LILFFIMFEATLIPTMIIITRWGNQKERLTAGMYFMFYTLISSMPLLIALLMMNYKMNNL 174 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +++ + +K MW+A +F IK+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 175 NVMLMPTTNKS----NTIMWLACTMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLL 230 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + P+ L + P I L+L +I SL+ + Q D+K LIAYSSI+HMG Sbjct: 231 KLGGYGMMR-ISPMLCLTKTLYYPFII-LALWGMIMTSLICLRQPDLKSLIAYSSISHMG 288 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V S + GAM M++HG+ SS LF ++Y+R HTR + G+ +P Sbjct: 289 LVIAATMIQTPSSLTGAMILMVAHGITSSMLFCLANMMYERTHTRTLTMMQGIQTTLPLM 348 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + + NM +P T +GE + ++F S +L ++A+YS++++ + Sbjct: 349 TAFWLTANLTNMAIPPTINLMGEITIATAMFNWSPPTLILTGSAATITAIYSMYMFSAIQ 408 Query: 433 FGVSKCEKVQQLKDLSLRE 451 G K +K + RE Sbjct: 409 QG--KTQKDMMIYPPQTRE 425 >gi|177543309|gb|ACB73041.1| NADH dehydrogenase subunit 4 [Colobus guereza occidentalis] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 141/447 (31%), Positives = 234/447 (52%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FEA+LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFEATLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRIMMLSRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL +Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHATIMLTGLNMLITALYSLHMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E ++ PI +L+ + G+ P Sbjct: 433 ENMLMLMHLSPIILLSLNPNIIMGLTP 459 >gi|95104615|gb|ABF51574.1| NADH dehydrogenase subunit 4 [Colobus guereza kikuyuensis] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 135/425 (31%), Positives = 224/425 (52%), Gaps = 19/425 (4%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FEA+LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFEATLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+ +F +K+P + H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLTCLMAFMVKMPXYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRTMMLSRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHVTIMLTGLNMLITALYSLYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMV 455 E ++ Sbjct: 433 ENMLM 437 >gi|108767278|ref|YP_636066.1| NADH dehydrogenase subunit 4 [Micropterus salmoides] gi|105873593|gb|ABF74822.1| NADH dehydrogenase subunit 4 [Micropterus salmoides] Length = 460 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 202/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S N + I L L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTTSEPINRQRMFITLLTSLQAFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L +S ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSTPLSLTTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIVLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMTSWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|2290484|gb|AAD04701.1| NADH dehydrogenase subunit 4 [Trachypithecus poliocephalus] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 135/400 (33%), Positives = 215/400 (53%), Gaps = 15/400 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-EN---FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+ LT +L P I++S + EN + Y+ + L+ +I F+S Sbjct: 53 STYLSFDPLSTPLLTLTAWLLPLMIMASQYHLHNENPSRKKLYLSMMIFLQISLIMTFMS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L +++ + Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLAGSLPLLI-MLMFTYNNM 171 Query: 191 TSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S I L ++ + + W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLNIVLLTLTAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L PL ++Y A LSL +I S + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMRLTSILNPL-TEYMAYPFLMLSLWGMIMTSSTCLRQTDLKALIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVITASLIQTPWSFTGAIILMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A V + N+ LP T IGE LV+ ++F S+ +L ++++ALYSL++ Sbjct: 351 LLPLMASWWFVANLTNLALPPTINLIGELLVMATLFSWSHVTIMLTGLNMLITALYSLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + +K RE +++ PI +L++ Sbjct: 411 FITTQRG-TLTSHIMNMKPSFTRENMLMFMHISPIILLSL 449 >gi|332887094|dbj|BAK23195.1| NADH dehydrogenase subunit 4 [Rasbora cephalotaenia] Length = 460 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/388 (33%), Positives = 207/388 (53%), Gaps = 15/388 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +SI + LT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSIPFLTLTCWLLPLMILASQNHINPEPISRQRLYISLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++T+ Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLAGSLPLLIALLLL---QQTT 172 Query: 193 SIIDLYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + ++ + P ++ W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 GTLSMFILQYSQPLALDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R ++ L + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAILLKLGGYGMMRMMIVLDAFNKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SS LF Y+R+H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFSGAIALMIAHGLTSSMLFCLANTTYERVHSRTMILIRGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P A + +AN+ LP +GE +I ++F S L G +++A YSL++ Sbjct: 352 IFPLAATWWFIANLANLALPPLPNLVGELTIITTMFNWSPWTIALTGTGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G V L+ RE ++ Sbjct: 412 FLMTQRG-QMPSHVMNLQPYHTREHLLM 438 >gi|281188333|gb|ADA55519.1| NADH dehydrogenase subunit 4 [Pan paniscus] gi|281188599|gb|ADA55766.1| NADH dehydrogenase subunit 4 [Pan paniscus] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/395 (33%), Positives = 216/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + + Y+ + L+ +I F + ++++F Sbjct: 59 DPLTTPLLMLTAWLLPLTIMASQRHLSNEPPSRKKLYLSMLISLQISLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YIFFE +LIP II WG ER+ A F YT GS+ +L A++ + +I+ Sbjct: 119 YIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTLGSLNIL- 177 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 178 LLTLTAQELS-NTWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L PL P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPLTKHMAYPFLM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 296 LVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ ++AN+ LP T +GE V+++ F SNT +L F ++++ALYSL+++ Sbjct: 356 TFWWLLASLANLALPPTINLLGELSVLVTSFSWSNTTLLLTGFNMLITALYSLYMFTTTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +G + +K RE +++ PI +L++ Sbjct: 416 WG-PLTHHINNMKPSFTRENTLMFMHLSPILLLSL 449 >gi|30142182|gb|AAP13863.1| NADH dehydrogenase subunit 4 [Etheostoma striatulum] Length = 461 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 198/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTASEPLARQRMYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLIIITRWGNQMERLNAGVYFLFYTLAGSLPLLVALLLLQNSSGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITLQFSDPSQLTSFADKLW-WAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL P I F +L +I V + Q D+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIVVMLDPLTESLSYPFIIF-ALWGVIMTGSVCLRQADLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVIGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++++S+F S L G++++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELMIVVSLFNWSWWTLALTGAGMLITASYSLYMF 412 >gi|107122082|ref|YP_626376.1| NADH dehydrogenase subunit 4 [Elephas maximus] gi|93140469|sp|Q2I3G5|NU4M_ELEMA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|83415400|gb|ABC17900.1| NADH dehydrogenase subunit 4 [Elephas maximus] gi|148283473|gb|ABQ57320.1| NADH dehydrogenase subunit 4 [Elephas maximus] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/383 (32%), Positives = 201/383 (52%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++LT +L P +++S + + Y+ ++L+ +I F + D++L Sbjct: 58 LDSLSTPLLILTIWLLPLMLIASQAHLSSGSTFQKKSYITTIILLQVSLIMTFAATDLIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FEA+LIP +II WG ER+ A F YT GS+ +L ++++ + T + Sbjct: 118 LYIMFEATLIPTMIIITRWGNQLERLNAGSYFLFYTLMGSLPLLVTLMLI---QNTLGSL 174 Query: 196 DLYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +L + SI W +W+ +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 NLMMLPYLTKSIDNLWSTNMLWLTCTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL + P + LSL ++ S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMLRITILLDPLTMHMYYPFLM-LSLWGMVMTSSICLRQTDMKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V I I GA+ M++HGL SS LF Y+R+H+R + GL +P Sbjct: 294 MALVIIAIMLQTPWSFMGALTLMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++ NM P T IGE L+I + F SN V+++ +Y+L + Sbjct: 354 LMAAWWLLASLINMAPPPTINLIGELLIITTSFSWSNLTIFPMGLNVLITTMYTLHMMTT 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G + +K RE Sbjct: 414 TQRG-KTSHHAKSIKPSFTRENT 435 >gi|284053761|ref|ZP_06383971.1| NAD(P)H-quinone oxidoreductase subunit M [Arthrospira platensis str. Paraca] Length = 385 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 117/320 (36%), Positives = 190/320 (59%), Gaps = 6/320 (1%) Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184 + GAFLS ++LLF +F+E LIP++++I +WGG +R YAA KF +YT I +L A + Sbjct: 2 IAGAFLSQNLLLFVLFYELELIPIYLLISIWGGEKRSYAAMKFLIYTAVSGILILAAFLG 61 Query: 185 MCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 M W + S D A+ S Q + + F IKIP+ P HTWLP+A+V++ Sbjct: 62 MAWLSGSGSF-DFGAIQTQNLSAISQLVLMVILLIGFGIKIPLVPLHTWLPDAYVESSAP 120 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 ++ L G++ K+G YG IRF L LFP Q AP + +++ +++Y +L ++ Q DIK++ Sbjct: 121 VTILLGGLLAKLGTYGLIRFGLQLFPETWQIIAPELSIIAVFSVMYGALTAISQQDIKRM 180 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 +AYSSI HMGY+ + + +G + + GA+ QM++HGL+ + LF VG++ ++ TRD+ Sbjct: 181 VAYSSIGHMGYIIVAMAAGTEVSLIGAISQMVAHGLILAILFHLVGIVEVKVGTRDLKLL 240 Query: 363 GGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL + +P + ++++ MA+ G+PG GF+ EFLV F ++L L Sbjct: 241 NGLMNPIRGLPLTSALLIMAGMASAGIPGLVGFVAEFLVFQGTFTVFPIQSLLCIIASGL 300 Query: 420 SALYSLWLYRKVVFGVSKCE 439 +A+Y + L + FG E Sbjct: 301 TAVYFVILLNRTCFGKLDNE 320 >gi|118196960|emb|CAL37056.1| NADH dehydrogenase subunit 4 [Boa constrictor imperator] Length = 451 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 197/369 (53%), Gaps = 15/369 (4%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDML 135 +D IS L+ L+ +L P I++S + + R +++ +L++ + FL+ + Sbjct: 57 NLDSISAPLLTLSYWLLPLMIIASQHMLTSEPLQRQRAFLMTITLLQTTISLTFLASSLT 116 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 L YI FEA+LIP ++I WG +ER+ A F +YT S+ +L A + + TS+ Sbjct: 117 LMYIMFEATLIPTLILITRWGQQAERLTAGTYFIMYTMTTSMPLLMATLFL---NNTSNT 173 Query: 195 IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 L+ M+ P W +W+A +F K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 174 PTLFFMNTQP--TNQWTSLLLWLACLTAFLAKMPIYGLHLWLPKAHVEAPIAGSMVLAAI 231 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L + F P + LSL I A+L + QTD+K LIAYSSI+H Sbjct: 232 LLKLGGYGMIRMMQILPTTKTDLFMPFMI-LSLWGAILANLTCLQQTDLKSLIAYSSISH 290 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I V GAM M++HG SS LF + Y+R HTR + G + +P Sbjct: 291 MGLVIAAIMIQTHWAVAGAMALMIAHGFTSSMLFCLANITYERTHTRILMLTRGFHNILP 350 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 ++ + N+ +P + F GE L++ S+F T +L ++++A YSL ++ Sbjct: 351 MMTAWWLMANLMNIAIPPSMNFTGELLIMSSLFNWCPTTIILLGVSMLITATYSLHMFLS 410 Query: 431 VVFGVSKCE 439 G + Sbjct: 411 TQTGKTSSN 419 >gi|62184518|ref|YP_220663.1| NADH dehydrogenase subunit 4 [Pogona vitticeps] gi|60650108|dbj|BAD90956.1| NADH dehydrogenase subunit 4 [Pogona vitticeps] Length = 456 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/389 (32%), Positives = 212/389 (54%), Gaps = 22/389 (5%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ Y + + F + VD IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYQYANKF----MAVDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRIFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 +L ++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 ILTILLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM ++ ++L S F +W+A +F +K+PM+ H WLP Sbjct: 162 LTALLVM---NNSTDHLNLMMFSTFKLKTTNLTNSALWLACMMAFMVKMPMYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR + P+ + P+I L+L II A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIR-ISPILQPTEKLHYPLIL-LALWGIIMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMVAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + ++ + N+ LP T +GE ++I +++ S + + Sbjct: 337 NSRTLITMRGLQKTSSLMTMFWLMACLTNLALPPTINLMGELIIISALYNWSPMTFTMPA 396 Query: 415 FGVVLSALYSLWLYR----KVVFGVSKCE 439 G VL+A Y++ ++ K+ ++ C+ Sbjct: 397 IGTVLTAAYTMHMFSSQRGKLPKEMTTCQ 425 >gi|47587946|gb|AAT35884.1| NADH dehydrogenase subunit 4 [Varecia variegata variegata] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/360 (34%), Positives = 202/360 (56%), Gaps = 8/360 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P IL+S + +E++ + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSSPLMMLTMWLLPLMILASQHHLAKESWTLKKSYLSMLIFLQMLLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ V + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLDFLFYTLTGSMPLLVALIYVQNYSGSLNLLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + P S +W+A +F IK+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 TNLCFQELPNSWSNNLLWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L L ++ A F L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITVILDSLM-KFTAYPFFMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + G+ +P + Sbjct: 298 IVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGIQAFLPLMST 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPSINLIGELFVTMTSFSWSNITIILMGLNMLITALYSLYMLTMTQRG 417 >gi|30142188|gb|AAP13866.1| NADH dehydrogenase subunit 4 [Etheostoma derivativum] Length = 461 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTASEPLTRQRMYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLIIITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSSGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L F + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITLQFSDPSQLTSFGDKLW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL P I F +L +I V + Q D+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIVVMLDPLTKDLSYPFIIF-ALWGVIMTGSVCLRQADLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVIGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S L G++++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELMIVSSLFNWSWWTLALTGAGMLITASYSLYMF 412 >gi|31095655|gb|AAP43130.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095659|gb|AAP43133.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095663|gb|AAP43136.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095667|gb|AAP43139.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095675|gb|AAP43145.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095683|gb|AAP43151.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095687|gb|AAP43154.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095691|gb|AAP43157.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095695|gb|AAP43160.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095699|gb|AAP43163.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095703|gb|AAP43166.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095707|gb|AAP43169.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095711|gb|AAP43172.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095715|gb|AAP43175.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095727|gb|AAP43184.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095731|gb|AAP43187.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095735|gb|AAP43190.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095739|gb|AAP43193.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095743|gb|AAP43196.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095747|gb|AAP43199.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095751|gb|AAP43202.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095763|gb|AAP43211.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095775|gb|AAP43220.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095779|gb|AAP43223.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095783|gb|AAP43226.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095787|gb|AAP43229.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095791|gb|AAP43232.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095795|gb|AAP43235.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095799|gb|AAP43238.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095807|gb|AAP43244.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095811|gb|AAP43247.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] Length = 456 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 205/374 (54%), Gaps = 18/374 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYTNKF----MAMDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L +++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 TLTALLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM ++ ++L S F + +W+A +F +K+P++ H WLP Sbjct: 162 LMALLVM---NNSTDHLNLMMFSTFKLNTTSLTNDTLWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR L P Y+ P I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIRISPILQPTEKLYY-PFIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMMAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S ++ + Sbjct: 337 NSRTLITMRGLQKTSSLMTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFLMPA 396 Query: 415 FGVVLSALYSLWLY 428 G VL+A Y++ ++ Sbjct: 397 IGTVLTAAYTMHMF 410 >gi|164454836|dbj|BAF96961.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 201/383 (52%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++LT +L P +++S + + Y+ ++L+ +I F + D++L Sbjct: 58 LDSLSTPLLILTIWLLPLMLIASQSHLSSGSTFQKKSYITTIILLQVSLIMTFAATDLIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FE +LIP +II WG ER+ A F YT GS+ +L ++++ + T + Sbjct: 118 LYIMFETTLIPTMIIITRWGNQLERLNAGSYFLFYTLVGSLPLLVTLMLI---QNTLGSL 174 Query: 196 DLYAMSKFPFSIQ-YW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +L + SI W +W+ +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 NLMMLPYLAKSINNLWSTNMLWLTCIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL + + P + LSL ++ S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMLRITILLDPLTTHMYYPFLM-LSLWGMVMTSSICLRQTDMKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V I I GA+ M++HGL SS LF Y+R+H+R + GL +P Sbjct: 294 MALVIIAIMLQTPWSFMGALALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++ NM P T IGE L+I + F SN V+++ +Y+L + Sbjct: 354 LMATWWLLASLINMAPPPTINLIGELLIITTSFSWSNLTIFPMGLNVLITTMYTLHMMTT 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G + +K RE Sbjct: 414 TQRG-KTSHHAKSIKPSFTRENT 435 >gi|315142478|gb|ADT82409.1| NADH dehydrogenase subunit 4L [Symphalangus syndactylus] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/352 (33%), Positives = 190/352 (53%), Gaps = 21/352 (5%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FE +LIP +II WG ER+ A F Y Sbjct: 93 KLYLSMLIILQISLIMTFTATELMMFYILFETTLIPTLIIITRWGNQPERLNAGSYFLFY 152 Query: 171 TFFGSIFMLFAIV----------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 T GS+ +L A++ +M + ++ D ++ MW+A+ +F Sbjct: 153 TLVGSLPLLIALIHTHNTLGSLNIMLLNLSSQNLTDSWS--------NNLMWLAYMMAFM 204 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A Sbjct: 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLM 263 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL +I S + + QTD+K LIAYSS++HM V I GA+ M++HGL S Sbjct: 264 LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFTGAIVLMIAHGLTS 323 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S LF Y+R H+R + GL P A ++ +AN+ LP T +GE V+M Sbjct: 324 SLLFCLANSNYERTHSRIMILSRGLQTLFPLMAFWWLMANLANLALPPTINLLGELFVLM 383 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 + F +NT +L ++++ALYSL+++ G+ + +K RE Sbjct: 384 ASFSWANTTIMLTGLNMLITALYSLYMFIMTQRGM-LTHHTKNMKPSLTREN 434 >gi|110432730|gb|ABG74004.1| NADH dehydrogenase subunit 4 [Lepilemur aeeclis] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/396 (32%), Positives = 211/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++L +L P +++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLILAMWLFPLTVMASQYHLAKEPWERKKHFLFTLISLQLFLILTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALSSI---QNYMGTLN 175 Query: 197 LYAMSKFPFS-IQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + I W MW+A +F IK+P++ FH WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWTQELINSWSSNLMWVACIMAFMIKMPLYGFHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITIILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNGTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ ++ N+ LP + +GE + M+ F SN +L ++++A YSL++ Sbjct: 355 MSTWWLLASLTNLALPPSINLVGELFITMASFSWSNMTIILTGLNMLITATYSLYMLMMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G K RE + V+P+ +LT+ Sbjct: 415 QRG-KPPYHAHNFKPSLTRENTLMSMHVFPLLLLTL 449 >gi|207559934|gb|ACI24532.1| NADH dehydrogenase subunit 4 [Naemorhedus griseus] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ ++I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFISMLILLQLLLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YITFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALI---------HIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 VIGSLNF-LVLQYWVQPMSNSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ P I LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRISLLLNPMTDFMSYPFIM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|156186508|gb|ABU55498.1| NADH dehydrogenase subunit 4 [Microrasbora rubescens] Length = 460 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 135/386 (34%), Positives = 212/386 (54%), Gaps = 13/386 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 L D +S L+VLT +L P IL+S ++ R +++ L+ ++I AF + ++ Sbjct: 57 LATDLLSTPLLVLTCWLLPLMILASQNHMRPEPITRQRFFIMLLTTLQILLIMAFGATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYIMFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLAGSLPLLVALMLLQQTTGTLS 176 Query: 194 IIDLYAMSK----FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 ++ L+ +K + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 ML-LFQYTKPILTAALGHKLW-WAGCLIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R + L PL++Q P I L+L +I LV + QTD+K LIAYSS+ Sbjct: 235 VLLKLGGYGMMRMMAMLDPLSNQLVYPFII-LALWGVIMTGLVCLRQTDLKSLIAYSSVG 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI + G GA+ M++HGL SSALF Y+R H+R + G+ M Sbjct: 294 HMGLVAGGILTQTVWGFTGAIILMIAHGLTSSALFCLANTSYERTHSRTMILARGMQMVM 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P V +AN+ +P +GE ++I ++F S L G +++A YSL+++ Sbjct: 354 PLATAWWFVANLANLAMPPLPNLMGELMIITTLFDWSPWTIALTGAGTLITANYSLYMFL 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G E + + RE ++ Sbjct: 414 TSQRG-PIPEHITNISPSHTREHLLM 438 >gi|31095679|gb|AAP43148.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095803|gb|AAP43241.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] Length = 456 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 205/374 (54%), Gaps = 18/374 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYTNKF----MAMDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L +++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 TLTALLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM ++ ++L S F + +W+A +F +K+P++ H WLP Sbjct: 162 LMALLVM---NNSTDHLNLMMFSTFKLNTTSLTNDALWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR L P Y+ P I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIRISPILQPTEKLYY-PFIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMMAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S ++ + Sbjct: 337 NSRTLITMRGLQKTSSLMTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFLMPA 396 Query: 415 FGVVLSALYSLWLY 428 G VL+A Y++ ++ Sbjct: 397 IGTVLTAAYTMHMF 410 >gi|295641169|gb|ADG22712.1| NADH dehydrogenase subunit 4 [Martes americana] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 127/389 (32%), Positives = 208/389 (53%), Gaps = 29/389 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 VD +S L++LTT+L P +++S + + + Y+ ++L+ ++I + ++++ Sbjct: 58 VDSLSAPLLMLTTWLLPLMLMASQHHLSKETLTRKKLYITMLVMLQLLLIMTLTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + T +++ Sbjct: 118 FYILFEATLMPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLWLQSNLGTLNLL 177 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 178 ----------VVQYWTQPLLSSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L PL + + A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITILLNPL-TDFMAYPFMMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMVLAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V M+ F SN +L + ++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLLGELFVAMASFSWSNITIILMGINITITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL++ G V+ +K RE Sbjct: 407 SLYMLITTQRG-KYTHHVKNIKPSFTREN 434 >gi|200004013|ref|YP_002221522.1| NADH dehydrogenase subunit 4 [Rachycentron canadum] gi|197941142|gb|ACH78277.1| NADH dehydrogenase subunit 4 [Rachycentron canadum] Length = 460 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 212/387 (54%), Gaps = 11/387 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FREYMIAFL--VLESMVIGAFLSLD 133 +L +D S L++LT +L P IL+S + E R+ M A L +L+ ++ AF + + Sbjct: 56 YLAIDAFSAPLLILTCWLLPLTILASQNHMTEEPITRQRMYASLLAILQFFLLLAFSTTE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP II WG SER+ A YT S+ +L ++++ T Sbjct: 116 LMMFYIVFEATLIPTIFIITRWGNQSERLNAGTYLLFYTLAASLPLLITLLMLQNTLGTL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ + M+ P + + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLLIPHMAPMPAATLADKLW-WLGCLMAFFVKLPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG IR L P+ + P I L+L + SL+ + QTD+K LIAYSS++ Sbjct: 235 ILLKLGGYGMIRITYMLEPITPEMSYPFII-LALWGAVMTSLICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI + + G GA+ M++HGL SSALF +Y+R H+R + GL Sbjct: 294 HMGLVAAGILTQSQWGFTGALALMIAHGLTSSALFCLANTVYERTHSRTMILARGLQVLS 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + T+AN+ P +GE ++I+S+F S +L +++A YSL+++ Sbjct: 354 PLMMTWWFLATLANLAFPPLPNLMGELMLIISLFNWSWWTLLLTGATTLITASYSLYMFI 413 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMVY 456 G L+ RE +++ Sbjct: 414 TTQRGTIPAHAT-MLEPTHTREHLLIF 439 >gi|290544737|gb|ADD37189.1| NADH dehydrogenase subunit 4 [Eumetopias jubatus] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/348 (35%), Positives = 192/348 (55%), Gaps = 11/348 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFTATELIMFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS-IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A++ M T + ++ Y P S W +W+A +F +K+P+ Sbjct: 153 TLLGSLPLLVALLYMQNNMGTLNFLMAQYWTQALPSS---WSNILLWLACMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S + A LS+ Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLNPLTS-FMAYPFMMLSMWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPLSYMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R H+R + GL +P A ++ ++ N+ LP T IGE V+M+ F Sbjct: 329 LANSNYERTHSRIMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SNT +L ++++ALYSL++ G + ++ +K RE Sbjct: 389 SNTTIILMGANIIITALYSLYMLITTQRG-NYTYHIKNIKPSFTRENT 435 >gi|156186480|gb|ABU55485.1| NADH dehydrogenase subunit 4 [Rasbora daniconius] Length = 460 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 134/395 (33%), Positives = 205/395 (51%), Gaps = 15/395 (3%) Query: 70 WIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMV 125 W D ++++ D +S + LT +L P IL+S I R Y+ L+ + Sbjct: 50 WTD--SNHYMATDPLSTPFLTLTCWLLPLMILASQNHINPEPISRQRMYISLLTSLQMFL 107 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVV 184 I AF + ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++ Sbjct: 108 IMAFGATEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLAGSLPLLIALLL 167 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + T S++ L P ++ W W +F +K+P++ H WLP AHV+AP Sbjct: 168 LQQSAGTLSMLILQYTQ--PLTLDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAP 225 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGS+ LA I+LK+GGYG IR ++ L + P I L+L II + + QTD+K Sbjct: 226 VAGSMVLAAILLKLGGYGMIRMMVVLDAFNKELAYPFIV-LALWGIIMTGSICLRQTDLK 284 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 LIAYSS++HMG V GI G GA+ M++HGL SS LF Y+R+H+R + Sbjct: 285 SLIAYSSVSHMGLVAGGILIQTTWGFSGAIALMIAHGLTSSMLFCLANTTYERVHSRTMI 344 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL P A + +AN+ LP +GE +I ++F S L G +++ Sbjct: 345 LIRGLQMIFPLAATWWFIANLANLALPPLPNLVGELTIITTLFNWSPWTIALTGMGTLIT 404 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 A YSL+++ G + L RE ++ Sbjct: 405 ASYSLYMFLMTQRG-QMPNHITNLPPYHTREHLLM 438 >gi|116733776|gb|ABK19945.1| NADH dehydrogenase subunit 4 [Ichthyomyzon unicuspis] gi|116733780|gb|ABK19947.1| NADH dehydrogenase subunit 4 [Ichthyomyzon unicuspis] gi|116733782|gb|ABK19948.1| NADH dehydrogenase subunit 4 [Ichthyomyzon unicuspis] gi|116733788|gb|ABK19951.1| NADH dehydrogenase subunit 4 [Ichthyomyzon fossor] gi|116733792|gb|ABK19953.1| NADH dehydrogenase subunit 4 [Ichthyomyzon fossor] gi|116733794|gb|ABK19954.1| NADH dehydrogenase subunit 4 [Ichthyomyzon fossor] Length = 342 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/344 (37%), Positives = 182/344 (52%), Gaps = 10/344 (2%) Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L FYI FEA+LIP +II WG ER+ A F YT S+ +L A++V+ + S Sbjct: 1 LTFYIAFEATLIPTLLIITRWGNQKERLTAGLYFLFYTLSASLPLLIALIVIQTRFNSLS 60 Query: 194 -----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + +L +S +S W W+A F +F IK+P++ FH WLP AHV+AP AGS+ LA Sbjct: 61 TYIIPLSNLTLLSNTSWSETMW-WVACFLAFLIKMPLYIFHLWLPKAHVEAPIAGSMVLA 119 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG IR PL P + +++ +I +S + + QTD+K +IAYSSI Sbjct: 120 AILLKLGGYGMIRMSSLFIPLTKDLAIPFMI-IAMWGMIVSSSICLRQTDLKSMIAYSSI 178 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V GIFS GA+ M++HGLVSS LF + Y+R HTR IF GL Sbjct: 179 NHMNLVVAGIFSMTPWAWSGALAMMIAHGLVSSGLFCLANITYERTHTRSIFMNRGLKTL 238 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++ T ANM LP F E L+I S+F SN +L + L+ L+S L Sbjct: 239 FPLMSFWWLMMTFANMALPPFPNFTAEILIITSMFNWSNWTILLLGLSMTLTTLFS--LN 296 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 ++ K + + RE ++ + I P PI Sbjct: 297 MLIMTQHEHPNKHAPINPSTTREHLLMLMHMAPIILLIINPSPI 340 >gi|108773491|gb|ABG11782.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|108773505|gb|ABG11795.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|108773520|gb|ABG11809.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|108773575|gb|ABG11860.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|108773589|gb|ABG11873.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|108773617|gb|ABG11899.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/395 (34%), Positives = 216/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMMLASQNHMKKENMMHQKLYISMLISLQILLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +++ P W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 L-SLTTHPLP-STWSNTILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRVSIILDPLTKSLAYPFII-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 296 LVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP +GE ++M+ F SN +L + +V++ +YS+++ Sbjct: 356 ATWWLLASLANLALPPLINLMGELFIVMATFSWSNPSMILMATNIVITGMYSMYMIITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 416 RG-KLTSHMNNLQPSHTRELTLMALHIIPLMLLTI 449 >gi|150372679|dbj|BAF66141.1| NADH dehydrogenase subunit 4 [Eumetopias jubatus] Length = 464 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/348 (35%), Positives = 192/348 (55%), Gaps = 11/348 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFTATELIMFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS-IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A++ M T + ++ Y P S W +W+A +F +K+P+ Sbjct: 153 TLLGSLPLLVALLYMQNNMGTLNFLMAQYWTQALPSS---WSNILLWLACMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S + A LS+ Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLNPLTS-FMAYPFMMLSMWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPLSYMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R H+R + GL +P A ++ ++ N+ LP T IGE V+M+ F Sbjct: 329 LANSNYERTHSRIMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SNT +L ++++ALYSL++ G + ++ +K RE Sbjct: 389 SNTTIILMGANIIITALYSLYMLITTQRG-NYTYHIKNIKPSFTRENT 435 >gi|238866970|ref|YP_002929460.1| NADH dehydrogenase subunit 4 [Varecia variegata variegata] gi|238809323|dbj|BAH69152.1| NADH dehydrogenase subunit 4 [Varecia variegata variegata] Length = 459 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 205/356 (57%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P IL+S + +E++ + Y+ + L+ +++ F + +++LF Sbjct: 59 DPLSSPLMMLTMWLLPLMILASQHHLAKESWTLKKSYLSMLIFLQMLLVMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSMPLLVALI---YVQNYSGSLN 175 Query: 197 LYAMS----KFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L M+ + P S +W+A +F IK+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 LLMMNLCFQELPNSWSNNLLWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L L +++ A F L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITVILDSL-TKFMAYPFFMLCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + G+ +P Sbjct: 295 ALVIVAILIQTPWSFMGATILMIAHGLTSSMLFCLANSNYERIHSRTMLLARGVQAFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 + ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 355 MSTWWLLASLTNLALPPSINLIGELFVTMTSFSWSNITIILMGLNMLITALYSLYM 410 >gi|332887010|dbj|BAK23117.1| NADH dehydrogenase subunit 4 [Trigonostigma heteromorpha] Length = 460 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 206/387 (53%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 ++ D +S + LT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YMATDPLSTPFLTLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLAGSLPLLIALLLL--QQTTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYAQPIALDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R ++ L + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AILLKLGGYGMMRMMIVLNTFNKELTYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SS LF Y+R+H+R + GL Sbjct: 293 SHMGLVASGILVQTTWGFSGAIALMIAHGLTSSMLFCLANTTYERVHSRTMILIRGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+++ Sbjct: 353 FPLAATWWFIANLANLALPPLPNLVGELTIITTMFNWSPWTIMLTGMGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 413 LMTQRG-QMPSHITNLSPYHTREHLLM 438 >gi|31095671|gb|AAP43142.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] Length = 456 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/389 (32%), Positives = 208/389 (53%), Gaps = 18/389 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYTNKF----MAMDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L +++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 TLTALLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM ++ ++L S F + +W+A +F +K+P++ H WLP Sbjct: 162 LMALLVM---NNSTDHLNLMMFSTFKLNTTSLTNDTLWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR L P Y+ P I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIRISPILQPTEKLYY-PFIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMMAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S ++ + Sbjct: 337 NSRTLITMRGLQKTSSLMTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFLMPA 396 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQ 443 G VL+A Y++ ++ + K Q Sbjct: 397 IGTVLTAAYTMHMFSTQQGKLPKEMMTHQ 425 >gi|229324858|ref|YP_002860228.1| NADH dehydrogenase subunit 4 [Crassostrea sikamea] gi|187762824|gb|ACD35442.1| NADH dehydrogenase subunit 4 [Crassostrea sikamea] gi|226247277|gb|ACO40209.1| NADH dehydrogenase subunit 4 [Crassostrea sikamea] Length = 449 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 141/414 (34%), Positives = 216/414 (52%), Gaps = 23/414 (5%) Query: 47 FSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCIL--SSW 104 FSL W R S + FC VD S +V L+ ++ IL S+ Sbjct: 36 FSLMYWGGSGVSRESLS--------ELFC-----VDIYSSSMVSLSLWICGISILVSSAM 82 Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYA 163 +++ F + I +L M++ F+ + +FY+ FE++L+PM IIG+WGG +RI + Sbjct: 83 LNLRGVFNSFWILVTLLCFMLVQCFMVNTLAMFYVLFESTLVPMVSIIGIWGGQVDRIPS 142 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM-WIAFFCSFAIK 222 YT GS +L ++ M E S + +K +S WM W F F +K Sbjct: 143 IQYMAAYTVGGSFPLL--LIFMSMELNGGSSFMWFISAKTDYS---WMFWTGCFLGFLVK 197 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +P FPFHTWLP AHVQAP GSV LAGI+LK+GGYG R ++ +F + F LS Sbjct: 198 LPSFPFHTWLPKAHVQAPVGGSVILAGILLKLGGYGITRVMM-IFSYTLESFGIYAMSLS 256 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 L +Y +L+ + Q+D+KKLIAYSS++HM + IG+FS + G+ GA ++SHG +S Sbjct: 257 LYGSVYGALMCLRQSDVKKLIAYSSVSHMAFAIIGLFSCSEVGLVGAYIMLVSHGFISPG 316 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF G+ + +H+R I A V +P + +V MAN+G+P I E L ++ V Sbjct: 317 LFVLCGINSELVHSRKIKAMNDGVRAVPSLGLFWLVMIMANLGVPPCPVIISEVLTVVCV 376 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 +L F +LS YS LY ++ +K + +++L++ +Y Sbjct: 377 VATFPWAFILLVFYFILSGAYSFSLYSQLTRTKNKPKTSVLFNEVTLKDMKALY 430 >gi|118457153|gb|ABK92199.1| NADH dehydrogenase subunit 4 [Beryx splendens] Length = 460 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 205/358 (57%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + Q R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHMTPEPQNRQRMYISLLTSLQVFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTLS 176 Query: 194 IIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L YA + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MLTLQYAKPLQLTSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMIMLDPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMVLARGLQMVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLLLTGTGTLITAGYSLYMF 412 >gi|256542259|dbj|BAH98099.1| NADH dehydrogenase subunit 4 [Oplegnathus fasciatus] Length = 460 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 200/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQLFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFETTLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTTG 173 Query: 191 TSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + S ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTIQYSSPLLLTTYADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMTMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMGELMIISSLFNWSWWTLLLTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|39981056|gb|AAR33056.1| NADH dehydrogenase subunit 4 [Megaptera novaeangliae] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/322 (36%), Positives = 189/322 (58%), Gaps = 10/322 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ + L++++I F + +++LFYI FEA+LIP +II WG +ER+ A F Y Sbjct: 93 KLYITMLITLQALLIMTFTATELILFYIMFEATLIPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF--PFSIQY---WMWIAFFCSFAIKIPM 225 T GS+ +L A++ + + T+ ++ + + P S + ++W+A +F +K+P+ Sbjct: 153 TLIGSLPLLVALLYL---QNTTGSLNFLLLQHWAQPLSTSWSNIFLWLACMMAFLVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R L PL +++ A LSL Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITSMLNPL-TEHMAYPFLMLSLWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V I GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSYMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R+H+R + GL +P A ++ ++ N+ LP T IGE LV+MSVF Sbjct: 329 LANSNYERIHSRTMILARGLQVFLPLMATWWLLASLTNLALPPTINXIGELLVVMSVFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWL 427 SN +L +V++ALY+L++ Sbjct: 389 SNPTIILMGTNIVITALYTLYM 410 >gi|16357047|ref|NP_443602.1| NADH dehydrogenase subunit 4 [Beryx splendens] gi|16267160|dbj|BAB70296.1| NADH dehydrogenase subunit 4 [Beryx splendens] Length = 460 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 205/358 (57%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + Q R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHMTPEPQNRQRMYISLLTSLQVFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTLS 176 Query: 194 IIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L YA + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MLTLQYAKPLQLTSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMIMLDPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMVLARGLQMVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLLLTGTGTLITAGYSLYMF 412 >gi|289183311|ref|YP_003457287.1| NADH dehydrogenase subunit 4 [Gigantactis vanhoeffeni] gi|288909061|dbj|BAI77296.1| NADH dehydrogenase subunit 4 [Gigantactis vanhoeffeni] Length = 460 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S ++ D IS L++LT +L P IL+S + R Y+ L+ +I AF + Sbjct: 54 SPYMATDPISTPLLILTCWLLPLMILASQNHMTSEPLNRQRIYITLLTFLQLFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEVIMFYIMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNTTG 173 Query: 191 TSSIIDL-YAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S++ L Y+ S +S + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLTLQYSNSPLLTTYSDKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L L PL + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMVRMLNILEPLTKELSYPFIV-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVVGGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGMQT 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP GE +++ S+F SN L G ++A YSL++ Sbjct: 352 LLPLMTSWWFIASLANLALPPLPNLTGEIMILTSLFGWSNWTIALTGAGAFITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|46403451|gb|AAS92740.1| NADH dehydrogenase subunit 4 [Microcebus mittermeieri] gi|46403456|gb|AAS92744.1| NADH dehydrogenase subunit 4 [Microcebus mittermeieri] gi|46403461|gb|AAS92748.1| NADH dehydrogenase subunit 4 [Microcebus mittermeieri] gi|46403466|gb|AAS92752.1| NADH dehydrogenase subunit 4 [Microcebus mittermeieri] gi|46403471|gb|AAS92756.1| NADH dehydrogenase subunit 4 [Microcebus mittermeieri] gi|46403476|gb|AAS92760.1| NADH dehydrogenase subunit 4 [Microcebus mittermeieri] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 196/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QDSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SNT ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNTTIIMTGLNMLITALYSLYM 410 >gi|25057323|ref|NP_739902.1| NADH dehydrogenase subunit 4 [Beryx decadactylus] gi|25005869|dbj|BAC23498.1| NADH dehydrogenase subunit 4 [Beryx decadactylus] Length = 460 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 205/358 (57%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + Q R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHMTPEPQNRQRMYISLLTSLQVFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTLS 176 Query: 194 IIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L YA + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 MLTLQYAKPLQLVSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMVMLDPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMVLARGLQMVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLLLTGTGTLITAGYSLYMF 412 >gi|197935779|ref|YP_002213673.1| NADH dehydrogenase subunit 4 [Halichoeres trimaculatus] gi|155964383|gb|ABU40251.1| NADH dehydrogenase subunit 4 [Halichoeres trimaculatus] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 206/364 (56%), Gaps = 12/364 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S +LG D +S L+VL+ +L P +++S + R Y+ ++L S++I AF Sbjct: 52 FLSPYLGTDSLSSPLLVLSCWLLPLMVMASQNHMTSEPIPRQRLYITIMVILHSLLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++L+FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 GATELLMFYLMFEATLIPTLFLITRWGNQTERLTAGTYFLFYTLAGSLPLLVALLML--Q 169 Query: 189 KKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T ++ L P + W W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 NDTGTLSMLILPYTQPLTHSNWGSGFWWTACLLAFLVKMPLYGIHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L+ L PL + P + L+L +I + + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMMRILVILGPLTKELAYPFMV-LALWGLIMTAAICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+ HMG V GI G GA+ M++HGL SSALF Y+R HTR + G Sbjct: 289 YSSVGHMGLVVAGILIQTTWGFSGALTLMIAHGLTSSALFCLANTNYERTHTRTMVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + + ++AN+ LP F+ E +IMS++ S L G +++A YS Sbjct: 349 LQAALPLMGLWWFIASVANLALPPLPNFVAEVSIIMSLWNWSWWTIFLTGTGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|166851872|ref|YP_001661390.1| NADH dehydrogenase subunit 4 [Trichechus manatus] gi|166788086|emb|CAP17677.1| NADH dehydrogenase subunit 4 [Trichechus manatus] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 134/396 (33%), Positives = 211/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S + QE+ + Y+ ++L+ +I F + +++L Sbjct: 59 DQLSTPLLILTTWLFPLMLMASQHHLSQESVTRKKSYVTMLILLQLFLIMTFTATELILL 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-I 195 YI FEA+LIP +II WG SER+ A F YT GSI +L +V + T ++ I Sbjct: 119 YIMFEATLIPTMIIITRWGNQSERLNAGLYFLFYTLLGSIPLLVTLVYIQNVLGTLNLMI 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 Y + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 179 TSYWIQHLPHS---WSTSILWLACMMAFMVKMPLYGIHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL P + LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTLLDPLTKSMAYPFLM-LSLWGMVMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSLLFCLANSNYERIHSRTMILARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ + NM LP + IGE +I++ SN + ++L+A Y+L++ Sbjct: 355 MAAWWLLACLTNMALPPSINLIGELFIILTSLSWSNFTIMFTGLNMLLTASYTLYMLITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + +K RE + V P+ +L++ Sbjct: 415 QRG-KASHHAKIIKPSFTRENALMALHVIPLLLLSI 449 >gi|95104622|gb|ABF51579.1| NADH dehydrogenase subunit 4 [Colobus guereza] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 135/414 (32%), Positives = 221/414 (53%), Gaps = 19/414 (4%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVI 126 I+Y S +L D ++ L++LT +L P I++S + + Y+ + L+ +I Sbjct: 50 INY--STYLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPSRKKLYLSMMVFLQISLI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVM 185 F++ +++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L ++ Sbjct: 108 MTFMATELILFYILFEATLIPTLIIITRWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYT 167 Query: 186 CWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + + +I+ L ++ S +W+A F +K+P++ H WLP AHV+AP AG Sbjct: 168 YNDLGSLNIMFLTLTAQKLTSTWSHNLLWLACMMGFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L P+ +++ A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMR-LTPILDPLTEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + GA+ M++HGL SS LF Y+R H+R + Sbjct: 287 AYSSVSHMALVIMASLIQTPWSFTGAIILMMAHGLTSSMLFCLANSNYERTHSRTMMLSR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A + + N+ LP T +GE LV+M+ F S+ +L ++++ALY Sbjct: 347 GLQTLLPLMAFWWFMANLTNLALPPTINLMGELLVVMASFSWSHATIMLTGLNMLITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT----VFFGIYP 469 SL++Y G S + +K RE ++ PI +L+ + G+ P Sbjct: 407 SLYMYITTQRG-SLTHHITNIKPSFTRENMLMLMHLSPIILLSLNPNIIMGLTP 459 >gi|62184307|ref|YP_220676.1| NADH dehydrogenase subunit 4 [Bradypus tridactylus] gi|61660085|gb|AAX50160.1| NADH dehydrogenase subunit 4 [Bradypus tridactylus] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 132/390 (33%), Positives = 208/390 (53%), Gaps = 29/390 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L++LTT+L P I++S + +N + Y+ ++L++ ++ F + D+++ Sbjct: 58 TDPLSAPLLILTTWLLPLMIIASQPHLPKNTITQKKTYISMLILLQTTLVMTFTTTDLIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FE +LIP +I+ WG +ER+ A F YT GS+ +L A+ + + S+ Sbjct: 118 LYILFETTLIPTLIIMTRWGNQTERLNAGLYFLFYTLIGSLPLLVALTYI--QNSLGSLN 175 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 L IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 176 FLV--------IQYWSQPLPTTWSSNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA I+LK+GGYG +R L PL P + LSL ++ S + + QTD+K LI Sbjct: 228 SMVLAAILLKLGGYGMLRITTILDPLTKSMAYPFMT-LSLWGMVMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM VT+ I + V GA M++HGL SS LF Y+R H+R + Sbjct: 287 AYSSVSHMALVTVAILTQTPWSVTGASTLMIAHGLTSSLLFCLANTNYERTHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A+ ++ ++AN+ LP T +GE +MS F S+T +L + ++ALY Sbjct: 347 GLQTLLPLMALWWLLASLANLALPPTINLMGELFTVMSTFSWSSTTIMLLGLNMTITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SL + G + + +K RE Sbjct: 407 SLSILIATQRG-NPTNHIHMIKPTFTRENT 435 >gi|84872443|gb|ABC67257.1| NADH dehydrogenase subunit 4 [Huperzia selago] Length = 187 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 102/187 (54%), Positives = 133/187 (71%) Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+APTAGSV AGI+ K+G +G RF +P+ P+A+ YF P I+ LS+IAIIY Sbjct: 1 HIWLPEAHVEAPTAGSVISAGILSKLGTHGFSRFSIPMCPVATLYFTPFIYTLSVIAIIY 60 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 SL ++ Q D+KK IAYSS+AHM + TIG+FS G+EG++ MLSHG V SALF VG Sbjct: 61 TSLTTIRQIDLKKNIAYSSVAHMNFGTIGMFSLNVQGIEGSISLMLSHGPVPSALFLRVG 120 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 +YDR TR + YGGLV MP ++ + + FT+ANM LPGTS FIGE L+ + FQ ++ Sbjct: 121 ALYDRHKTRLVKYYGGLVSTMPIFSTISLFFTLANMSLPGTSSFIGEILIFVGAFQRNSL 180 Query: 409 VAVLASF 415 V LA+ Sbjct: 181 VGALAAL 187 >gi|304365484|gb|ADM26295.1| NADH dehydrogenase subunit 4 [Shinisaurus crocodilurus] Length = 456 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/376 (34%), Positives = 199/376 (52%), Gaps = 15/376 (3%) Query: 71 IDYFCSY---HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL----VLES 123 +D C++ +L VD IS L+ LT +L P ++S + AFL +L++ Sbjct: 46 LDLECTHLTTNLSVDSISAPLLTLTCWLLPLMTIASQNHLHTEPMNRKRAFLSTLAILQT 105 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAI 182 +I F + D+++FY+ FEA+LIP +II WG +ER+ A F LYT S+ +L I Sbjct: 106 FLILTFTASDLMMFYVMFEATLIPTLIIITRWGAQAERLNAGTYFLLYTLTSSLPLLITI 165 Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 + + K + ++ Y P + W +W+ +F +K+P++ H WLP AHV+ Sbjct: 166 LYL--NNKHALVLLQYLHFTQPALTESWTYYTLWLGCLMAFMVKMPLYGLHLWLPKAHVE 223 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP AGS+ LA I+LK+GGYG IR L L PL P + L+L II S + + QTD Sbjct: 224 APVAGSMVLAAILLKLGGYGIIRVSLALNPLTHTLSYPFMA-LALWGIIMTSTICLRQTD 282 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS+ HMG V + + + G M M++HGL SS LF Y+R +R Sbjct: 283 LKSLIAYSSVGHMGLVIAAVLIQTQWSLSGTMMLMIAHGLTSSMLFCLANTNYERTQSRT 342 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GL +P + + NM P + +GE +I S+F S T +L G + Sbjct: 343 LLLARGLHLILPMMTFWWLFANLTNMATPPSINLMGELFIISSLFNWSTTTIILTGTGTL 402 Query: 419 LSALYSLWLYRKVVFG 434 L+A YSL+++ G Sbjct: 403 LTATYSLYVFLSTQQG 418 >gi|14587619|gb|AAK70602.1|AF224637_4 NADH dehydrogenase subunit 4 [Microcebus rufus] gi|145567171|gb|ABP81958.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 196/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKEPLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ M + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYM--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|254674959|dbj|BAH86479.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] Length = 452 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 215/383 (56%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ ++ + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLLYQRVFVGCQAFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 GSLALDLSYEGVFQLSYLVNFW-WVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGATAMLSSEVFLALALWGIVVMGGICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLSGSRGLIMM 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ + ++ NM LP GE + +++++ S V S G VL+A YSL+L+ Sbjct: 349 FPLISLGWFLMSLMNMALPPAINLFGELVAMVALYNWSPYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +G + + + L ++ RE Sbjct: 409 GMSQWG-NTMKNYKNLYIITSRE 430 >gi|34577045|ref|NP_858944.2| NADH dehydrogenase subunit 4 [Thunnus thynnus thynnus] gi|33622387|gb|AAP57955.2| NADH dehydrogenase subunit 4 [Thunnus thynnus thynnus] Length = 460 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 205/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWK-SIQENF---REYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S + QE R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTAQEPINPQRMYITLLTSLQFFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L YA + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYAPPLQLMSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMIMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWSFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +G +++ S+F S+ L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGGIMILTSLFNWSHWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|110189672|ref|AP_004901.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|128764|sp|P05508|NU4M_RAT RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|639984|emb|CAA32963.1| NADH subunit 4 [Rattus norvegicus] gi|19577323|emb|CAD21568.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|54145381|gb|AAV31048.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|157092690|gb|ABV22524.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|228014900|gb|ACP50315.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|228014914|gb|ACP50328.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|228014928|gb|ACP50341.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|228014942|gb|ACP50354.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|291464903|gb|ADE05974.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|291464917|gb|ADE05987.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/395 (34%), Positives = 216/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMMLASQNHMKKENMMHQKLYISMLISLQILLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +++ P W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 L-SLTTHPLP-STWSNTILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRVSIILDPLTKSLAYPFII-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 296 LVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP +GE ++M+ F SN +L + +V++ +YS+++ Sbjct: 356 ATWWLLASLANLALPPLINLMGELFIVMATFSWSNPSIILMATNIVITGMYSMYMIITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 416 RG-KLTSHMNNLQPSHTRELTLMALHIIPLMLLTI 449 >gi|30142178|gb|AAP13861.1| NADH dehydrogenase subunit 4 [Etheostoma smithi] Length = 461 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTASEPLARQRMYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP +II WG ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLIIITRWGNQMERLNAGVYFLFYTLAGSLPLLVALLLLQNSSXTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITLQFSDPSQLTSFADKLW-WAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL P I F +L +I V + Q D+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIVVMLDPLTKSLSYPFIIF-ALWGVIMTGSVCLRQADLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVIGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S L G++++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELMIVASLFNWSWWTLALTGAGMLITASYSLYMF 412 >gi|156073043|gb|ABU45861.1| NADH dehydrogenase subunit 4 [Eulemur coronatus] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 201/359 (55%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S LV+LT +L P I++S + +E++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLVILTMWLLPLMIMASQYHLTKESWILKKLYLSMLISLQMFLVLTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L VV+ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLL---VVLIYIQNYLGSLN 175 Query: 197 LYAM----SKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + M + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 MLTMKFYIQEMPNS---WSNNILWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R L PL P + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITTILDPLTKHMSYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V +GI GA M++HGL SS LF Y+R+H+R + G+ Sbjct: 292 SHMALVIVGILIQTPWSFMGATILMVAHGLTSSMLFCLANSNYERIHSRTMLLARGVQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE V M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSLYM 410 >gi|213583233|ref|ZP_03365059.1| NADH dehydrogenase subunit M [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 327 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/337 (38%), Positives = 191/337 (56%), Gaps = 34/337 (10%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVA----LGISTINFIFSLFVWSVFD 56 M LP+L ++ PF+G F+ C + FGV + + T+ +L + Sbjct: 1 MLLPWLILI---PFIGGFL--------CWQTERFGVKVPRWIALITMELTLALGLQLWLQ 49 Query: 57 KGRSSFQMIEYYHWIDYFC---------SYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 G S Q W F S HL +DG+S+L+VVLT L +L SW+ I Sbjct: 50 GGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAVLCSWREI 109 Query: 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-----GSERIY 162 ++ + + + + VIG FL++DM LF+ F+E L+PM+ +I +WG G RI Sbjct: 110 EKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRIT 169 Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCW-EKKTSSI--IDLYAMSKFPFS--IQYWMWIAFFC 217 AA KFF+YT + ML AI+ + + K +S+ + + P S ++Y + + FF Sbjct: 170 AATKFFIYTQASGLVMLIAILALVFVHYKATSVWTFNYEELLNTPMSHGVEYLLMLGFFI 229 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +FA+K+P+ P H WLP+AH QAPTAGSV LAGI+LK YG +RF LPLFP AS FAP+ Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPI 289 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 +L +I I Y + ++ Q DIK+LIAY+S++HMG+V Sbjct: 290 AMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFV 326 >gi|149193564|gb|ABR21261.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] Length = 452 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 113/311 (36%), Positives = 175/311 (56%), Gaps = 12/311 (3%) Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS- 192 ++FY FE +L+P ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 117 IMFYALFETTLVPTLILITRWGAQTERLNAGTYFIFYTLAGSLPLLVALLYIHSTNNHTL 176 Query: 193 -SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 I+ ++ + FP ++ MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 177 IPILTMHQSATFPTNL---MWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 233 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR L L P P I L+L +I SL+ + QTD+K +IAYSS++HM Sbjct: 234 LKLGGYGIIRLTLILMPTTQTMCFPFIV-LALWGMIMTSLICLRQTDLKSIIAYSSVSHM 292 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G VT + GAM M++HGL SS LF Y+R HTR + GL +P Sbjct: 293 GLVTAASLIQTPWSIHGAMLLMIAHGLTSSMLFCLANTNYERTHTRTLILVRGLQLALPL 352 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + NM LP T +GE ++I+++F + T VL +++A+YSL Sbjct: 353 MTTWWLLSNLMNMALPPTINLLGELMIIITLFNWNMTTIVLTGSATLITAMYSL-----H 407 Query: 432 VFGVSKCEKVQ 442 +F ++ K+Q Sbjct: 408 IFLTTQQNKLQ 418 >gi|37496429|emb|CAD21969.1| NADH dehydrogenase subunit 4 [Chrysochloris asiatica] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/387 (33%), Positives = 211/387 (54%), Gaps = 13/387 (3%) Query: 88 LVVLTTFLTPFCILSSW--KSIQENFRE--YMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 L++LTT+L P +++S + + R+ Y+ + L+ +I F + ++++FYI FEA Sbjct: 65 LLILTTWLLPLMLMASQFHLNTESELRKKTYISMLITLQIFLIMTFTASELIMFYILFEA 124 Query: 144 SLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI--IDLYAM 200 +LIP ++I WG +ER+ A F YT GS+ +L A+ + + +I I Sbjct: 125 TLIPTLILITRWGNQTERLNAGLYFLFYTLAGSLPLLVALTYLQNNLGSLNILLIQFITQ 184 Query: 201 SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCI 260 P ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG + Sbjct: 185 PMSPSISSNFLWLACMLAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMM 244 Query: 261 RFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS 320 R + + PL P + LSL ++ SL+ + QTD+K LIAYSS++HM V + I Sbjct: 245 RITILIDPLNYSMAFPFLM-LSLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILI 303 Query: 321 GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFT 380 G GA M++HGL SS LF Y+R+H+R + GL +P A+ + Sbjct: 304 QTPWGFMGATTLMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQSIIPLMALWWFTAS 363 Query: 381 MANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK 440 + N+ LP + FIGE + +S+F S +L ++++ALYSL++ G Sbjct: 364 LMNLALPPSINFIGELFITLSMFSWSKLSLLLMGLNMLITALYSLYMLITTQRG-KPSFH 422 Query: 441 VQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + ++P+ +L+V Sbjct: 423 INSIKPTFTREHTLMTLHIFPLILLSV 449 >gi|30466132|gb|AAP33659.1|AF224643_4 NADH dehydrogenase subunit 4 [Otolemur crassicaudatus] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 205/384 (53%), Gaps = 14/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S + + + Y+ + L++ +I F + +++LF Sbjct: 58 DTLSTPLLILTTWLLPLMIMASQHHLSKEPLTRKKLYITMLISLQTFLIATFSASELILF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-I 195 YI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + S+ + Sbjct: 118 YILFETTLIPTLIIITRWGNQTERLNAGLYFLFYTLLGSLPLLVALIHT--QNFVGSLNL 175 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + A+ I W W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 SILALYLHDTPISPWSNSLTWLACMLAFLVKMPLYGTHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P + P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITNILSPTTNIMPYPFLI-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS +F Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSLMFCLANSNYERIHSRTMILARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A+ + +AN+ LP T IGE ++I++ F S +L +++A+YSL+++ Sbjct: 355 MAIWWLTAGLANLALPPTINLIGELIIIITSFSWSKLTILLTGLNTLITAIYSLYMFITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G +K RE ++ Sbjct: 415 QRG-KPTYHTYNIKPSHTRENILM 437 >gi|25057462|ref|NP_739642.1| NADH dehydrogenase subunit 4 [Carapus bermudensis] gi|25005505|dbj|BAC23173.1| NADH dehydrogenase subunit 4 [Carapus bermudensis] Length = 460 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/358 (37%), Positives = 207/358 (57%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 +G+D +S L+VLT +L P IL+S +Q R ++ + L++ +I AF + +M Sbjct: 57 MGLDPLSTPLLVLTCWLLPLMILASQGHMQIEPANRQRTFITLLISLQTFLIVAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP V+I WG R+ A+ F LYT GS+ +L A++ + E T S Sbjct: 117 IMFYVMFEATLIPTLVLIARWGNQPARLNASTYFLLYTLTGSLPLLVALLALYNEMGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ + AM + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLVMQYPQAMVLVSHADMIW-WTGCVIAFLVKMPLYGIHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL P I L+L + S + M Q D+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMTLLEPLTLDMCFPFIA-LALWGMAMTSSICMRQNDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R+H+R I GL +P Sbjct: 295 MGAVAAGILVQTSWGFTGALALMIAHGLTSSALFCLANTNYERIHSRTIVLARGLQLVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 A ++ T+AN+ LP +IGE +++ ++F+ SN L ++++A YSL+++ Sbjct: 355 LMATWWLLATLANLALPPLPNYIGELVLVTALFKWSNWTLPLTGLAILITAAYSLYMF 412 >gi|194246891|ref|YP_002004560.1| NADH dehydrogenase subunit 4 [Bombina maxima] gi|193875981|gb|ACF24648.1| NADH dehydrogenase subunit 4 [Bombina maxima] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/392 (32%), Positives = 209/392 (53%), Gaps = 13/392 (3%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGA 128 +F + +D +S L++L+ +L P I++S + R Y+ + L+ ++ A Sbjct: 50 HFTTQISSIDQLSSPLLILSCWLLPIMIIASQNHLMLEPLNRQRTYVTTLVSLQIALVVA 109 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + +++LFYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++ + Sbjct: 110 FSATELILFYITFEITLIPTLMLITRWGNQAERLNAGIYFLFYTLMGSLPLLIALLSL-- 167 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + ++ L P + W W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 168 QSSEGTLSTLLMQLNTPLMMSSWANKAWWLACLIAFMVKMPLYGAHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA I+LK+GGYG +R + L P + A L+L +I S + + QTD+K +I Sbjct: 228 SMVLAAILLKLGGYGILRISM-LLPTSMSNLAYPFIILALWGVIMTSSICLRQTDLKSMI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GA+ M++HGLVSSALF Y+R H+R + Sbjct: 287 AYSSVSHMGLVIAAAMIQTPWSFSGAIVLMVAHGLVSSALFCLANTNYERTHSRTLLLSR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ +P ++ +ANM LP + +GE V++++F SN +L G +L+A Y Sbjct: 347 GMQIILPLMGAWWLLSNLANMALPPSPNLMGELSVMIAMFNWSNWTILLTGMGTLLTAAY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 SL+++ G + + + L RE ++ Sbjct: 407 SLYMFLMTQRGPTP-QHLMALNPTHTREHTLM 437 >gi|51339487|gb|AAU00505.1| NADH dehydrogenase subunit 4 [Lontra canadensis] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/388 (33%), Positives = 207/388 (53%), Gaps = 29/388 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ + L+ ++I F S ++++F Sbjct: 59 DSLSAPLLMLTMWLLPLMLMASQYHLSKETLTRKKLYITMLITLQLLLIMTFTSTELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L +++ W + ++ Sbjct: 119 YILFEATLMPTLIIITRWGNQAERLNAGLYFLFYTLVGSLPLLISLL---WMQNNLGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 L-------LVIQYWTQPPLNSWSNTLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL + P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITVLLNPLTNHMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQSPWSYMGATALMIAHGLTSSLLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T +GE V+M+ F SN +L + ++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLANLALPPTINLVGELFVVMASFSWSNITILLMGVNITITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KYTHHIKSIKPSFTREN 434 >gi|11610813|ref|NP_071693.1| NADH dehydrogenase subunit 4 [Chalinolobus tuberculatus] gi|11545698|gb|AAG37934.1|AF321051_9 NADH dehydrogenase subunit 4 [Chalinolobus tuberculatus] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/350 (34%), Positives = 195/350 (55%), Gaps = 11/350 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ L+L+ +I F + ++++FYI FEA+L+P +II WGG +ER+ A F Y Sbjct: 93 KLYITMMLLLQIFLIMTFSATELIMFYILFEATLVPTLIIITRWGGQAERLNAGIYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF-SIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A+V + + + ++L + + S+Q W +W+++ +F +K+P+ Sbjct: 153 TLAGSLPLLVALV---YTQTSLGSLNLLLTQHWDYLSMQTWSSSALWLSYMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA I+LK+GGYG +R L L P+ + P + LSL Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMLRITLMLDPITNSMAYPFMM-LSLWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQSPWSFMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R H+R + GL +P A ++ ++ N+ LP + IGE V M++F Sbjct: 329 LANSNYERTHSRTMILARGLQMILPLMAAWWLLASLTNLALPPSINLIGELFVTMAMFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 SN +L + ++ALY+L++ G + +K RE ++ Sbjct: 389 SNFSIILLGINITITALYTLYMLTSTQRG-KHTYHIHNIKPSFTRENTIM 437 >gi|254674945|dbj|BAH86466.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] Length = 452 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 130/383 (33%), Positives = 215/383 (56%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ + + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLIYQRVFVGCQVFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 GSLALDLSYEGVFQVSYLVNFW-WVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGATAMLSSEVFLALALWGIVVMGGICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLAGSRGLIMI 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ + ++ NM LP GE + +++V+ S+ V S G VL+A YSL+L+ Sbjct: 349 FPLISLGWFLMSLMNMALPPAINLFGELVAMVAVYNWSSYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +G + + + L ++ RE Sbjct: 409 GMSQWG-NTMKNYKNLYIITSRE 430 >gi|116733790|gb|ABK19952.1| NADH dehydrogenase subunit 4 [Ichthyomyzon fossor] Length = 342 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/344 (37%), Positives = 182/344 (52%), Gaps = 10/344 (2%) Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L FYI FEA+LIP +II WG ER+ A F YT S+ +L A++V+ + S Sbjct: 1 LTFYIAFEATLIPTLLIITRWGNQKERLTAGLYFLFYTLSASLPLLIALIVVQTRFNSLS 60 Query: 194 -----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + +L +S +S W W+A F +F IK+P++ FH WLP AHV+AP AGS+ LA Sbjct: 61 TYIIPLSNLTLLSNTSWSETMW-WVACFLAFLIKMPLYIFHLWLPKAHVEAPIAGSMVLA 119 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG IR PL P + +++ +I +S + + QTD+K +IAYSSI Sbjct: 120 AILLKLGGYGMIRMSSLFIPLTKDLAIPFMI-IAMWGMIVSSSICLRQTDLKSMIAYSSI 178 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V GIFS GA+ M++HGLVSS LF + Y+R HTR IF GL Sbjct: 179 NHMNLVVAGIFSMTPWAWSGALAMMIAHGLVSSGLFCLANITYERTHTRSIFMNRGLKTL 238 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++ T ANM LP F E L+I S+F SN +L + L+ L+S L Sbjct: 239 FPLMSFWWLMMTFANMALPPFPNFTAEILIITSMFNWSNWTILLLGLSMTLTTLFS--LN 296 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 ++ K + + RE ++ + I P PI Sbjct: 297 MLIMTQHEHPNKHAPINPSTTREHLLMLMHMAPIILLIINPSPI 340 >gi|25057523|ref|NP_739694.1| NADH dehydrogenase subunit 4 [Physiculus japonicus] gi|25005575|dbj|BAC23238.1| NADH dehydrogenase subunit 4 [Physiculus japonicus] Length = 460 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 124/361 (34%), Positives = 211/361 (58%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++G D +S L+ L+ +L P I++S + R ++ +L+ +I AF + Sbjct: 54 NLYIGTDPLSTPLLALSCWLLPLMIMASQHHLLTEPVNRQRTFISILTILQIFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++F+I FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEMIMFFIMFEATLIPTLSLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNDMG 173 Query: 191 T-SSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S +I Y +F S+ + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSMLIVNYMDPQFSPSMTNKIW-WAACMIAFFVKMPLYGMHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L P++ + P I L+L ++ A + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGIMRIMVLLTPISKEMIYPFII-LALWGVVMAGSICLRQTDLKALIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V G+ G +GA+ M++HGL SSALF + Y+R+H+R + GL Sbjct: 292 VSHMGLVVAGLLIQTPWGFKGALVLMIAHGLTSSALFCLANINYERIHSRTMLLARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + + + AN+ LP +GE +++ ++F S L G++++A YSL++ Sbjct: 352 ALPLMSSWWLFASFANLALPPLPNLVGEIMIVTALFNWSPWTLALTGTGMLITATYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|86604642|dbj|BAE79226.1| NADH dehydrogenase subunit 4 [Tetraodon nigroviridis] Length = 460 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 203/361 (56%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 ++ D +S L++L+ +L P IL+S N + I+ L L+ +I AF + + Sbjct: 56 YMATDPLSTPLLILSCWLLPLMILASQNHTAHEPINRQRMYISLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 116 MIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNSNG 173 Query: 193 SIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+ L + P ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 SLSLLTLLHSTPPQLSTYADKIW-WTGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRILMTLEPLTKELSYPFII-LALWGVIMTGSICMRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S L G++++A YSL++ Sbjct: 352 ALPLMTAWWFITSLANLALPPLPNLMGELMIVTSLFNWSWWTIALTGLGMLITASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|108773603|gb|ABG11886.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/395 (34%), Positives = 216/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMMLASQNHMKKENMMHQKLYISMLISLQILLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +++ P W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 L-SLTTHPLP-STWSNTILWLACVMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRVSIILDPLTKSLAYPFII-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 296 LVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP +GE ++M+ F SN +L + +V++ +YS+++ Sbjct: 356 ATWWLLASLANLALPPLINLMGELFIVMATFSWSNPSMILMATNIVITGMYSMYMIITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 416 RG-KLTSHMNNLQPSHTRELTLMALHIIPLMLLTI 449 >gi|110189724|ref|YP_665638.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|26983985|gb|AAN77603.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|228014956|gb|ACP50367.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/395 (34%), Positives = 216/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMMLASQNHMKKENMMHQKLYISMLISLQILLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +++ P W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 L-SLTTHPLP-STWSNTILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRVSIILDPLTKSLAYPFII-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 296 LVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP +GE ++M+ F SN +L + +V++ +YS+++ Sbjct: 356 ATWWLLASLANLALPPLINLMGELFIVMATFSWSNPSIILMATNIVITGIYSMYMIITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 416 RG-KLTSHMNNLQPSHTRELTLMALHIIPLMLLTI 449 >gi|218436971|ref|YP_002381179.1|ND4_23367 NADH dehydrogenase subunit 4 [Rattus tanezumi] gi|160688897|gb|ABX45306.1| NADH dehydrogenase subunit 4 [Rattus tanezumi] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 135/393 (34%), Positives = 212/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S +++ + + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMMLASQNHMKKENPMHQKLYISMLISLQILLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGVYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + L P +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LSLTTQPLPPTWSNNILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRISMILDPLTKSLAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I GA M++HGL SS LF Y+R+H+R + GL P A Sbjct: 298 ITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERVHSRTMIMARGLQMIFPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP +GE ++M+ F SN L + +V++ +YS+++ G Sbjct: 358 WWLLASLANLALPPLINLMGELFIVMATFSWSNPSIALMATNIVITGMYSMYMIITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + L+ RE + + P+ +LTV Sbjct: 418 -KLTSHMNNLQPSHTRELTLMALHIIPLMLLTV 449 >gi|209427682|ref|YP_002274341.1| NADH dehydrogenase subunit 4 [Micropterus dolomieu] gi|208972969|dbj|BAG74326.1| NADH dehydrogenase subunit 4 [Micropterus dolomieu] gi|208972983|dbj|BAG74339.1| NADH dehydrogenase subunit 4 [Micropterus dolomieu] Length = 460 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S N + I L L++ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTTSEPINRQRMFITLLTSLQAFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L +S ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSAPLSLTTYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P I F +L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMVVLEPLTKELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQI 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMTSWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|2290480|gb|AAD04698.1| NADH dehydrogenase subunit 4 [Trachypithecus poliocephalus] Length = 459 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 135/400 (33%), Positives = 214/400 (53%), Gaps = 15/400 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-EN---FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+ LT +L P I++S + EN + Y+ + L+ +I F+S Sbjct: 53 STYLSFDPLSTPLLTLTAWLLPLMIMASQYHLHNENPSRKKLYLSMMIFLQISLIMTFMS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L +++ + Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLAGSLPLLI-MLMFTYNNM 171 Query: 191 TSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S I L ++ + + W+A +F +K+P++ H WLP AHV+ P AGS+ L Sbjct: 172 GSLNIVLLTLTAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEGPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L PLA +Y A LSL +I S + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMRLTSILNPLA-EYMAYPFLMLSLWGMIMTSSTCLRQTDLKALIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVITASLIQTPWSFTGAIILMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A V + N+ LP T IGE LV+ ++F S+ +L ++++ALYSL++ Sbjct: 351 LLPLMASWWFVANLTNLALPPTINLIGELLVMATLFSWSHVTIMLTGLNMLITALYSLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + +K RE +++ PI +L++ Sbjct: 411 FITTQRG-TLTSHIMNMKPSFTRENMLMFMHISPIILLSL 449 >gi|145567166|gb|ABP81954.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] Length = 459 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/364 (34%), Positives = 194/364 (53%), Gaps = 30/364 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKEPLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAI-------------V 183 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ V Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLV 178 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + W + TSS+ +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 179 MNMWSQDTSSVWS-----------SNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L P P I L L +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALY Sbjct: 347 GLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALY 406 Query: 424 SLWL 427 SL++ Sbjct: 407 SLYM 410 >gi|116733810|gb|ABK19962.1| NADH dehydrogenase subunit 4 [Ichthyomyzon greeleyi] Length = 342 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 169/297 (56%), Gaps = 8/297 (2%) Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L FYI FEA+LIP +II WG ER+ A F YT S+ +L A++++ + S Sbjct: 1 LTFYIAFEATLIPTLLIITRWGNQKERLTAGLYFLFYTLSASLPLLIALIMIQTRCNSLS 60 Query: 194 II-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + +L +S +S W WIA F +F IK+P++ FH WLP AHV+AP AGS+ LA Sbjct: 61 VYIIPLSNLTLLSSISWSETMW-WIACFLAFLIKMPLYVFHLWLPKAHVEAPIAGSMVLA 119 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG IR PL P + +++ +I +S + + QTD+K +IAYSSI Sbjct: 120 AILLKLGGYGMIRMSSLFVPLTKDLAIPFMV-IAVWGMIVSSSICLRQTDLKSMIAYSSI 178 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V GIFS GA+ M++HGLVSS LF + Y+R HTR IF GL Sbjct: 179 NHMNLVVAGIFSMTPWAWSGALAMMVAHGLVSSGLFCLANITYERTHTRSIFMNRGLKTL 238 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P + ++ T ANM LP F+ E L+I S+F SN +L + L+ L+SL Sbjct: 239 FPLMSFWWLMMTFANMALPPFPNFMAEILIITSMFNWSNWTILLLGLSMTLTTLFSL 295 >gi|109689605|ref|YP_659443.1| NADH dehydrogenase subunit 4 [Semnopithecus entellus] gi|88174242|gb|ABD39249.1| NADH dehydrogenase subunit 4 [Semnopithecus entellus] Length = 459 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 209/387 (54%), Gaps = 20/387 (5%) Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----RE 113 ++S +I Y YF S D +S L+ LT +L P +++S + + Sbjct: 43 NQTSNNLIGYS---TYFSS-----DPLSTPLLTLTAWLLPLMVMASQYHLHNESPSRKKL 94 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 Y+ ++L+ +I F++ +++LFYI FE +LIP +II WG +ER+ A+ F YT Sbjct: 95 YLSMMILLQISLIMTFMATELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTL 154 Query: 173 FGSIFMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPF 228 GS+ +L I++M + S+ I L ++ +I + W+A +F +K+P++ Sbjct: 155 AGSLPLL--IMLMYTQNSLGSLNIMLLTLTAQKLTITWSHSLTWLACMMAFMVKMPLYGL 212 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA ++LK+GGYG IR L PL ++Y A LSL +I Sbjct: 213 HLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMIRLTSILNPL-TEYMAYPFLMLSLWGMIM 271 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 S + QTD+K LIAYSS++HM VT+ GA+ M++HGL SS LF Sbjct: 272 TSSTCLRQTDLKSLIAYSSVSHMALVTMASLIQTPWSFTGAVILMIAHGLTSSMLFCLAN 331 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 Y+R H+R + GL +P A + + N+ LP T IGE LV+++ F S+ Sbjct: 332 SNYERTHSRIMMLSRGLQTLLPLMAFWWFMANLTNLALPPTINLIGELLVVVTSFSWSHV 391 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGV 435 + ++++ALYSL ++ GV Sbjct: 392 TIMFTGLNMLITALYSLHMFTTTQRGV 418 >gi|62184503|ref|YP_220636.1| NADH dehydrogenase subunit 4 [Porichthys myriaster] gi|58430924|dbj|BAD89262.1| NADH dehydrogenase subunit 4 [Porichthys myriaster] Length = 459 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 140/376 (37%), Positives = 205/376 (54%), Gaps = 14/376 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAF 129 + +L D +S L+VLT +L P IL+S ++ E F R ++ +L +I AF Sbjct: 52 LTNLYLSTDPLSSPLLVLTLWLMPLMILASQNHLKTETFPRQRSFLFILTLLHISLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 +L+ LLFYI FEA+LIP +II WG +ERI A F YT S+ +L IV++ + Sbjct: 112 SALNALLFYIMFEATLIPTLMIITRWGNQTERISAGTYFLFYTIISSMPLL--IVLLVAQ 169 Query: 189 KKTSS-----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 K S I L +S FS W W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 170 KDLGSLSFPLIQQLSNLSSPTFSNNLW-WLACMMAFLVKMPLYGIHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA I+LK+GGYG IR +LPL Y A L++ II S + + Q D+K LI Sbjct: 229 SMVLAAILLKLGGYGMIR-ILPLIKPLPCYMAYPFIILAIWGIIMTSSICLCQMDLKALI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V I + + GA M++HG SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVIASILIQTQWSLTGATILMIAHGFTSSALFCLANTNYERTHSRTMLLTR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + ++ + N+ LP T + E +I S+F+ S + GV+++A Y Sbjct: 348 GLQVLLPLMSAWWLLTCLLNLALPPTINLVAELTIISSLFKWSPWTLLFTGGGVLVTAAY 407 Query: 424 SLWLYRKVVFGVSKCE 439 SL ++ G +K E Sbjct: 408 SLSMFLVTQRGPAKQE 423 >gi|108742962|gb|ABG02114.1| NADH dehydrogenase subunit 4 [Microcebus mamiratra] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 197/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKSYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + +K S Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QKSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMSGLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ F ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNMLITALYSLYM 410 >gi|2290496|gb|AAD04710.1| NADH dehydrogenase subunit 4 [Trachypithecus phayrei] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 136/400 (34%), Positives = 217/400 (54%), Gaps = 15/400 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-EN-FRE--YMIAFLVLESMVIGAFLS 131 S +L D +S L+ LT +L P I++S + EN R+ Y+ + L+ +I F+S Sbjct: 53 STYLSSDPLSTPLLTLTAWLLPLMIMASQYHLHNENPLRKKLYLSMMIFLQISLIMTFMS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFY+ FE +LIP +II WG +ER+ A+ F YT GS+ +L ++ M Sbjct: 113 TELILFYVLFETTLIPTLIIITRWGNQAERLNASTYFLFYTLSGSLPLLIMLMFMYNNMG 172 Query: 191 TSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + +I+ L M++ +I + +W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 SLNIVLLTLMAQ-KLTITWSHNLIWLACMLAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L PL ++Y A LSL +I S + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMRLTSILNPL-TEYMAYPFLMLSLWGMIITSSTCLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V I GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVIIASLIQTPWSFAGAIILMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQI 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + N+ LP T IGE LV+ + F S+ +L ++++ALYSL + Sbjct: 351 LLPLMGFWWFAANLTNLALPPTINLIGELLVVTTSFSWSHITIMLTGLNMLITALYSLHM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + +K RE +++ PI +L++ Sbjct: 411 FITTQRG-TLTSHIMNMKPSFTREDMLMFMHISPIILLSL 449 >gi|27802014|ref|NP_776283.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] gi|27753541|dbj|BAC55201.1| NADH dehydrogenase subunit 4 [Branchiostoma belcheri] Length = 452 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/377 (33%), Positives = 212/377 (56%), Gaps = 11/377 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S+ LV+L+ +L P +++S + + ++ R ++I ++L S ++ AFL+ +LLF Sbjct: 58 DFMSVALVILSVWLLPLMLIASQQHMAKDTGLYQRIFIICQVILMSALVLAFLASHLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F+ YT GS+ +L +V ++ S +D Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFYTMVGSLPLLICLVGQ-YKMMGSLSLD 176 Query: 197 LY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L M K + W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+ Sbjct: 177 LILGGMYKGEYFTNLW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVLLKL 235 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + ++ V+F L+L ++ + + QTD+K LIAYSS+ HM V Sbjct: 236 GGYGLMRISYA-WGASALLSGEVVFALALWGMVVMGAICLRQTDLKSLIAYSSVGHMALV 294 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 GI +G G GAM M++HGLVSS LF Y+R H+R++ G++ P Sbjct: 295 VGGIMTGTTWGYNGAMILMIAHGLVSSCLFSLANYWYERSHSRNLLGSRGMIILFPLMGA 354 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + ++ N+ LP T GE + +++V+ S + G VL+A YSL+++ +G Sbjct: 355 GWFIASLMNLALPPTINLFGELVAMVAVYNWSMFSVIFMGVGAVLTAAYSLYMFGMSQWG 414 Query: 435 VSKCEKVQQLKDLSLRE 451 E + L ++ RE Sbjct: 415 -EVLENYKNLHVMTSRE 430 >gi|31095767|gb|AAP43214.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095771|gb|AAP43217.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] Length = 456 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 205/374 (54%), Gaps = 18/374 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYTNKF----MAMDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L +++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 TLTALLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYFLFYTLTGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM ++ ++L S F + +W+A +F +K+P++ H WLP Sbjct: 162 LMALLVM---NNSTDHLNLMMFSTFKLNTTSLTNDTLWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR L P Y+ P I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIRISPILQPTEKLYY-PFIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMMAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S ++ + Sbjct: 337 NSRTLITMRGLQKTSSLMTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFLMPA 396 Query: 415 FGVVLSALYSLWLY 428 G VL+A Y++ ++ Sbjct: 397 IGTVLTAAYTMHMF 410 >gi|83779471|gb|ABC47539.1| NADH dehydrogenase subunit 4 [Vampyressa brocki] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/322 (36%), Positives = 183/322 (56%), Gaps = 10/322 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KSYITMLIMLQVFLIMTFTATELIMFYILFEATLLPTLIIITRWGNQAERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIV-VMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A+V + + ++ Y S P S W +W+A +F +K+P+ Sbjct: 153 TLVGSLPLLVALVHIQNLTGTLNFLLTQYWTSPIPTS---WSTTLLWLACMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + + A LSL Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITILLEPL-TNFMAYPFMMLSLWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + + GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAVLIQTPWSFMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R+H+R + GL +P A ++ ++ N+ LP T IGE +IM+ F Sbjct: 329 LANSNYERVHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELFIIMATFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWL 427 SN L ++L+ALYSL++ Sbjct: 389 SNLSLFLLGLNIILTALYSLYM 410 >gi|13786595|ref|NP_112660.1| NADH dehydrogenase subunit 4 [Isoodon macrourus] gi|13676810|gb|AAK38290.1|AF358864_8 NADH dehydrogenase subunit 4 [Isoodon macrourus] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/345 (35%), Positives = 193/345 (55%), Gaps = 8/345 (2%) Query: 88 LVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 L+VL+ +L P +++S + + + Y+ ++L+ +I AF S ++++FYI FE Sbjct: 65 LIVLSCWLLPLMMIASQNHLNKETLTRKKTYLTMLIILQLSLIMAFSSSELIMFYILFET 124 Query: 144 SLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK 202 +LIP +II WG +ER+ A F YT GS+ +L A++ M + + I+ + +S Sbjct: 125 TLIPTLIIITRWGNQNERLNAGLYFLFYTLVGSLPLLIALLYMHNKLGSLHILTMTLLSN 184 Query: 203 --FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCI 260 P +W A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG + Sbjct: 185 NMHPTLSNSVLWYACMVAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIM 244 Query: 261 RFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS 320 R + P P I LS+ +I S + + QTD+K LIAYSS++HMG V I Sbjct: 245 RLTVFTHPSTMTLCYPFII-LSMWGMIMTSSICLRQTDMKSLIAYSSVSHMGLVIIAALM 303 Query: 321 GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFT 380 GA M++HGL SS LF Y+R+H+R + GL +P + ++ + Sbjct: 304 QSTLSFMGATTLMIAHGLTSSMLFCLANTNYERIHSRILILARGLQMILPLMCIWWLMAS 363 Query: 381 MANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +AN+ LP + +GE +VI+S F SN +L V++A+YSL Sbjct: 364 LANLALPPSINLLGELMVIVSSFSWSNFSIILLGINTVITAMYSL 408 >gi|14587577|gb|AAK70578.1|AF224631_4 NADH dehydrogenase subunit 4 [Microcebus ravelobensis] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 129/395 (32%), Positives = 211/395 (53%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L++ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKEPLMRKKLYLSMLTFLQTFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSMGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMPNLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYMLTMTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + +K RE + + P+ +LT+ Sbjct: 416 RG-KFTHHIYNIKPSYTRENTLMSMHMLPLIMLTL 449 >gi|108742811|gb|ABG01993.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] gi|108742841|gb|ABG02017.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] gi|108742851|gb|ABG02025.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] gi|108742856|gb|ABG02029.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] gi|108742861|gb|ABG02033.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/393 (33%), Positives = 211/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +S+ S+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MIMLSQNLPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP IGE VIM+ F SN ++ V+++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPFINLIGELFVIMTSFSWSNLTIIMTGLNVLITALYSLYMLTMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +LT+ Sbjct: 418 -KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|189492732|gb|ACE01435.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 207/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|164421109|ref|YP_001648514.1| NADH dehydrogenase subunit 4 [Pteragogus flagellifer] gi|124387729|gb|ABN10230.1| NADH dehydrogenase subunit 4 [Pteragogus flagellifer] Length = 460 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 206/363 (56%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 + + LGVD +S L+VL+ +L P I++S + R Y+ ++L+ +I AF Sbjct: 52 YVNSSLGVDSLSSPLLVLSCWLLPLMIIASQNHMSNEPLHRQRLYISLMIILQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+L+P +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEVIMFYVMFEATLVPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQSS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L F FS W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSMLTLQYAKPFEYITFSDNLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P + L+L II + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILVVLDPLTKELGYPFMI-LALWGIIMTGTICLRQTDLKALIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R HTR + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHTRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P V ++AN+ LP + E +V++S+F S +L G +++A YSL Sbjct: 350 QMALPLMTTWWFVASLANLALPPLPNLMAELMVMVSLFNWSWWTLILTGSGTLITAAYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|280978206|ref|YP_003345148.1| NADH dehydrogenase subunit 4 [Monognathus jesperseni] gi|271280702|dbj|BAI53519.1| NADH dehydrogenase subunit 4 [Monognathus jesperseni] Length = 478 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 208/359 (57%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAFLSLD 133 ++ D +S L+ L+ +L P +++S ++ N ++ ++ LV L++++I AF + + Sbjct: 56 YMATDPLSAPLLALSCWLLPLMVIASQNYLKLEPSNRQQLFLSMLVSLQALLIVAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +LFYI FEA+LIP ++I WG ER+ A F YT GS+ +L A++V+ E T Sbjct: 116 FMLFYITFEATLIPTLILITRWGSQKERLNAGNYFLFYTLVGSLPLLIALLVLQKELGTL 175 Query: 193 SIIDLYAMSKFPFS---IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L ++ F ++W + +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLTLQFINPVSFDGWGCKFWG-VGCLMAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG IR + L PLA + P I L+L I+ LV + QTD+K +IAYSS+ Sbjct: 235 VLLKLGGYGMIRMIFMLGPLAKELTYPFIV-LALWGIVMTGLVCLRQTDLKSMIAYSSVG 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G+ GAM M++HGLVSSALF Y+R +R + G+ + Sbjct: 294 HMGLVAGGIMIQTPWGITGAMILMIAHGLVSSALFCLANTSYERTRSRTLMLTRGMQTIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + ++AN+ LP + E ++I ++F + L G +++A YS++++ Sbjct: 354 PLMATWWFLTSLANLALPPLPNLMAELMIITAMFNWTPYSLFLTGTGTLITAGYSMYMF 412 >gi|207559962|gb|ACI24558.1| NADH dehydrogenase subunit 4 [Capricornis sumatraensis] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/355 (35%), Positives = 196/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG----AFLSLDMLLF 137 D +S L++LT +L P +++S + + F+ + ++ F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLARKKLFISMLILLQLLLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG ++R+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQADRLNAGLYFLFYTLAGSLPLLVALIHI--QNTIGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPMPNSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITLLLNPMTDFMSYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVMMSTFSWSNITIILMGLNMVITALYSLYM 410 >gi|108793528|ref|YP_637071.1| NADH dehydrogenase subunit 4 [Phalanger interpositus] gi|94481225|dbj|BAE94028.1| NADH dehydrogenase subunit 4 [Phalanger vestitus] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 119/324 (36%), Positives = 182/324 (56%), Gaps = 4/324 (1%) Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYA 163 K + Y+ ++L+ ++ AF S ++++FYI FEA+LIP ++I WG +ER+ A Sbjct: 86 KESTNRKKTYLTMLIILQLFLLMAFSSAELIMFYILFEATLIPTLIVITRWGNQNERLNA 145 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS-KFPFSI-QYWMWIAFFCSFAI 221 F YT GS+ +L A++ M + I+ + MS FS+ +W A +F + Sbjct: 146 GLYFLFYTLAGSMPLLVALLYMYINMGSLHILLISMMSTNMNFSMSNSLLWFACMTAFMV 205 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG +R + P+ S + P I L Sbjct: 206 KMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIMRMTILTQPITSNLYYPFII-L 264 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 S+ I S + + QTD+K LIAYSS++HM V I GA M++HGL SS Sbjct: 265 SMWGTIMTSSMCLRQTDLKSLIAYSSVSHMALVIIAALLQSTLSFMGATALMVAHGLTSS 324 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 LF Y+R+H+R + GL +P ++ ++AN+ LP T +GE ++I+S Sbjct: 325 MLFCLANTNYERIHSRTMILARGLQTILPLMCTWWLIASLANLALPPTINLLGELMIIVS 384 Query: 402 VFQNSNTVAVLASFGVVLSALYSL 425 F SN +L V++ALYSL Sbjct: 385 SFSWSNFSIILLGLNTVITALYSL 408 >gi|5835662|ref|NP_008480.1|ND4_15041 NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|6647634|sp|Q9ZZ58|NU4M_CANFA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|4154180|gb|AAD04772.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50301815|gb|AAT74135.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50301829|gb|AAT74148.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50301871|gb|AAT74187.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50301885|gb|AAT74200.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50301913|gb|AAT74226.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50301955|gb|AAT74265.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50301969|gb|AAT74278.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50301983|gb|AAT74291.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50302039|gb|AAT74343.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50302053|gb|AAT74356.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50302067|gb|AAT74369.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|51872063|gb|AAU12156.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|91702433|gb|ABE48008.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|91702489|gb|ABE48060.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|91702503|gb|ABE48073.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|91702531|gb|ABE48099.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065539|gb|ABY79870.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065567|gb|ABY79896.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065581|gb|ABY79909.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065595|gb|ABY79922.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065637|gb|ABY79961.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065693|gb|ABY80013.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065721|gb|ABY80039.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065749|gb|ABY80065.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065777|gb|ABY80091.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065791|gb|ABY80104.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065819|gb|ABY80130.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065875|gb|ABY80182.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065889|gb|ABY80195.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065903|gb|ABY80208.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065917|gb|ABY80221.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065931|gb|ABY80234.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065973|gb|ABY80273.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066015|gb|ABY80312.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066029|gb|ABY80325.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066043|gb|ABY80338.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066057|gb|ABY80351.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066071|gb|ABY80364.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066099|gb|ABY80390.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066113|gb|ABY80403.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066141|gb|ABY80429.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066155|gb|ABY80442.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066211|gb|ABY80494.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066225|gb|ABY80507.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066239|gb|ABY80520.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066267|gb|ABY80546.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066295|gb|ABY80572.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066323|gb|ABY80598.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066351|gb|ABY80624.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066365|gb|ABY80637.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066379|gb|ABY80650.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492578|gb|ACE01292.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492606|gb|ACE01318.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492620|gb|ACE01331.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492648|gb|ACE01357.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492802|gb|ACE01500.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492900|gb|ACE01591.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492914|gb|ACE01604.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492928|gb|ACE01617.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493040|gb|ACE01721.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493054|gb|ACE01734.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493068|gb|ACE01747.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493096|gb|ACE01773.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493110|gb|ACE01786.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493124|gb|ACE01799.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493138|gb|ACE01812.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493152|gb|ACE01825.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493166|gb|ACE01838.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493180|gb|ACE01851.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493194|gb|ACE01864.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493208|gb|ACE01877.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493222|gb|ACE01890.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493236|gb|ACE01903.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493250|gb|ACE01916.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493264|gb|ACE01929.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493278|gb|ACE01942.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493292|gb|ACE01955.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493306|gb|ACE01968.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493320|gb|ACE01981.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493334|gb|ACE01994.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493348|gb|ACE02007.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493362|gb|ACE02020.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493376|gb|ACE02033.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493390|gb|ACE02046.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493404|gb|ACE02059.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493418|gb|ACE02072.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493432|gb|ACE02085.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493446|gb|ACE02098.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493460|gb|ACE02111.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493474|gb|ACE02124.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493488|gb|ACE02137.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493502|gb|ACE02150.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493516|gb|ACE02163.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493530|gb|ACE02176.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493544|gb|ACE02189.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493558|gb|ACE02202.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493572|gb|ACE02215.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493586|gb|ACE02228.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493600|gb|ACE02241.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493614|gb|ACE02254.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493628|gb|ACE02267.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493656|gb|ACE02293.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493670|gb|ACE02306.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493712|gb|ACE02345.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493726|gb|ACE02358.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493852|gb|ACE02475.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493880|gb|ACE02501.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493922|gb|ACE02540.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494006|gb|ACE02618.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494034|gb|ACE02644.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494048|gb|ACE02657.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494076|gb|ACE02683.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494090|gb|ACE02696.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494174|gb|ACE02774.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494202|gb|ACE02800.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494216|gb|ACE02813.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494272|gb|ACE02865.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494314|gb|ACE02904.1| NADH dehydrogenase subunit 4 [Canis lupus] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 207/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|116733806|gb|ABK19960.1| NADH dehydrogenase subunit 4 [Ichthyomyzon bdellium] gi|116733808|gb|ABK19961.1| NADH dehydrogenase subunit 4 [Ichthyomyzon greeleyi] gi|116733812|gb|ABK19963.1| NADH dehydrogenase subunit 4 [Ichthyomyzon greeleyi] Length = 342 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 169/297 (56%), Gaps = 8/297 (2%) Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L FYI FEA+LIP +II WG ER+ A F YT S+ +L A++++ + S Sbjct: 1 LTFYIAFEATLIPTLLIITRWGNQKERLTAGLYFLFYTLSASLPLLIALIMIQTRCNSLS 60 Query: 194 II-----DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + +L +S +S W WIA F +F IK+P++ FH WLP AHV+AP AGS+ LA Sbjct: 61 VYIIPLSNLTLLSSISWSETMW-WIACFLAFLIKMPLYIFHLWLPKAHVEAPIAGSMVLA 119 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG IR PL P + +++ +I +S + + QTD+K +IAYSSI Sbjct: 120 AILLKLGGYGMIRMSSLFVPLTKDLAIPFMV-IAVWGMIVSSSICLRQTDLKSMIAYSSI 178 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V GIFS GA+ M++HGLVSS LF + Y+R HTR IF GL Sbjct: 179 NHMNLVVAGIFSMTPWAWSGALAMMVAHGLVSSGLFCLANITYERTHTRSIFMNRGLKTL 238 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P + ++ T ANM LP F+ E L+I S+F SN +L + L+ L+SL Sbjct: 239 FPLMSFWWLMMTFANMALPPFPNFMAEILIITSMFNWSNWTILLLGLSMTLTTLFSL 295 >gi|91702545|gb|ABE48112.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492634|gb|ACE01344.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492704|gb|ACE01409.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492718|gb|ACE01422.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492760|gb|ACE01461.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492788|gb|ACE01487.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492816|gb|ACE01513.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492844|gb|ACE01539.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492872|gb|ACE01565.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492984|gb|ACE01669.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492998|gb|ACE01682.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493698|gb|ACE02332.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494160|gb|ACE02761.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 207/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|91702517|gb|ABE48086.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492942|gb|ACE01630.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189494188|gb|ACE02787.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 207/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|464240|sp|P34941|NU4M_ARBLI RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|1280183|gb|AAA98046.1| ND4 [Arbacia lixula] Length = 457 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/341 (36%), Positives = 199/341 (58%), Gaps = 14/341 (4%) Query: 69 HWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESM 124 HWI + ++ VD + + L+VL+ +LTP +++S + N R +++ +++ + Sbjct: 45 HWISKWHNFINSVDSMQLPLLVLSCWLTPLALIASKGHLNNLPITNQRTFIVLVIIITTS 104 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV 183 +I F SL+++LFYI FE +L+P ++I WG ER A F YT FGS+ +L +++ Sbjct: 105 LIITFSSLELILFYIAFETTLVPTLILITRWGALMERFQAGLYFIFYTLFGSLPLLISLI 164 Query: 184 VMCWEKKTSSIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + + + SI ++ + + S+ W W+ +F +K+P++ FH WLP AHV+AP Sbjct: 165 ALYFSSNSLSIPNVELVWLTTNSSTSLTVW-WLLSILAFLVKMPIYGFHLWLPKAHVEAP 223 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA--PVIFFLSLIAIIYASLVSMVQTD 298 AGS+ LA I+LK+GGYG +R L+ LF S F+ P++ F A++ S++ + QTD Sbjct: 224 VAGSMILAAILLKLGGYGLMR-LISLFSTTSLNFSSLPLVVFCCWGALV-TSIICIRQTD 281 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS+ HM V G+FS G+ GA+ M++HGLVSSALF +Y+R TR Sbjct: 282 LKALIAYSSVGHMSIVAAGVFSQTIWGINGALMLMIAHGLVSSALFALANTMYERSGTRT 341 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 + G+ +P ++ AN+G P S IGE L I Sbjct: 342 LVITRGMKLILPLSTFWWLIMCAANLGFP-YSNLIGEILYI 381 >gi|86990385|ref|YP_492675.1| NADH dehydrogenase subunit 4 [Acanthaster brevispinus] gi|86476024|dbj|BAE79188.1| NADH dehydrogenase subunit 4 [Acanthaster brevispinus] Length = 460 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 202/360 (56%), Gaps = 12/360 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLS 131 S + D ++ L++L+ +L P +++S +I+ N R ++ V+ + +I S Sbjct: 54 SANFATDPLATPLIILSIWLGPLSLIASINTIKSLPLINQRTFISLIFVILTALILTLAS 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKK 190 L++ LFYI FE +L+P ++I WG ++ Y A +FL YT GS+ +L AI+ + + Sbjct: 114 LELTLFYIAFETTLLPTLILISRWGANKERYQASTYFLFYTLVGSLPLLIAIISI-YTTT 172 Query: 191 TSSIIDLYAMSK----FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 SS++ +++ P ++ W+ +F IK+P++ FH WLP AHV+AP AGS+ Sbjct: 173 NSSLLPTTSLNNNITSLPTTLTSLWWVFCLIAFVIKMPIYGFHLWLPKAHVEAPIAGSMI 232 Query: 247 LAGIMLKMGGYGCIRFL-LPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG R + + + P + P+ F A+I S++ + QTD+K LIAY Sbjct: 233 LAAVLLKLGGYGLTRTITIFVIPASINISFPLTTFCIWGALI-TSIICLRQTDLKALIAY 291 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HM V GIFS G+ GA+ M++HGL+SSALF ++Y+R TR + G Sbjct: 292 SSVGHMSLVASGIFSISLWGINGALTLMIAHGLISSALFCLANLLYERNTTRTLSITRGF 351 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P V ++ + N+GLP T IGE L+I ++ + + + + ALYSL Sbjct: 352 KLVTPLLTVWWIITCVTNLGLPPTPNLIGELLIISTIIDWNILSTPIITTATIFGALYSL 411 >gi|194395425|gb|ACF60263.1| NADH dehydrogenase subunit 4 [Deinagkistrodon acutus] Length = 445 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/388 (33%), Positives = 198/388 (51%), Gaps = 27/388 (6%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDM 134 L +D IS L+ L+ +L P ++S K + R ++ +L+ + F++ ++ Sbjct: 50 LNLDSISTPLLSLSYWLLPLTTIASQHAMAKEPLQRQRTFLATLTLLQLFISMTFMAWNL 109 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L YI FEA+LIP +II WG +ER+ A F LYT S+ +L AI+ Sbjct: 110 TLMYIMFEATLIPTLIIITRWGQQTERLTAGTYFMLYTLTTSLPLLMAII---------- 159 Query: 194 IIDLYAMSKFPF-----SIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 I+ + PF S+ W +W+A +F K+P++ H WLP AHV+AP AGS Sbjct: 160 FINNLTNTPTPFIQTSHSLSQWTSLLLWLACLTAFLAKMPIYGLHLWLPKAHVEAPIAGS 219 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG IR + L + F P I L+L I A+L + QTD+K LIA Sbjct: 220 MVLAAILLKLGGYGIIRMMQILPATKTDMFLPFIV-LALWGAILANLTCLQQTDLKSLIA 278 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSSI+HMG V I G+ GAM M++HG SSALF Y+R HTR + G Sbjct: 279 YSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRG 338 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P + + N+ +P T F E L++ ++F T ++ ++++A YS Sbjct: 339 FHNILPMTTTWWLFVNLMNIAIPPTMNFTSELLIMSTLFNWCPTTIIMLGLSMLITASYS 398 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L ++ G + Q + RE Sbjct: 399 LHMFLSTQMGPTPLNN--QTEPTHSREH 424 >gi|53686386|ref|YP_097046.1| NADH dehydrogenase subunit 4 [Ensatina eschscholtzii] gi|51979809|gb|AAU20483.1| NADH dehydrogenase subunit 4 [Ensatina eschscholtzii] Length = 457 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 132/394 (33%), Positives = 215/394 (54%), Gaps = 21/394 (5%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN-FRE---YMIAFLVLESMVIGAF 129 + ++G++ IS L+VLT +L P IL+S ++ N F + YM F +L+ +I AF Sbjct: 51 LTNKYMGLNEISSPLLVLTCWLLPMMILASQNHLKNNPFNQQQMYMSMFTILQMALILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +++LFY+ FE +LIP +II WG +ER+ A F YT GS+ +L ++++M Sbjct: 111 SSTELILFYMAFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLISLLLMHTS 170 Query: 189 KKTSSIIDLYAMSKFPFSI-QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S+ LY + +I +W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 171 IGSLSMEFLYISPQMFVTIPNKILWFGCLTAFMVKMPLYGIHLWLPKAHVEAPVAGSMIL 230 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR L PL + +I L+L I+ L+ QTD+K LIAYSS Sbjct: 231 AAVLLKLGGYGIIRITLMFSPLMELSYPFII--LALWGILMTGLICTRQTDLKSLIAYSS 288 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GAM M++HGL+SSALF + Y+R H+R + G+ Sbjct: 289 VSHMGLVVAATLIQTTWSFMGAMIMMITHGLISSALFCLANMNYERTHSRTMLLTRGMQM 348 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P ++ ++ N+ LP T F E +++S+F S ++ G +++ Y+L++ Sbjct: 349 MLPLTTTWWLLLSLFNVALPPTPNFWAELSIMVSLFNWSKWTILITGLGTLITVTYTLYM 408 Query: 428 YRKVVFGVSKCEKVQQLKDLSL------RERCMV 455 + ++ Q K L+ RE C++ Sbjct: 409 FLMT-------QRGQLPKHLNFIPPSYTREHCLL 435 >gi|5835161|ref|NP_008221.1|ND4_10552 NADH dehydrogenase subunit 4 [Gorilla gorilla] gi|62297085|sp|P03907|NU4M_GORGO RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|6045110|dbj|BAA85283.1| NADH dehydrogenase subunit 4 [Gorilla gorilla] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 205/359 (57%), Gaps = 9/359 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFEA+LIP VII WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFEATLIPTLVIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDL-YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPF 228 T GS+ +L A++ + +I+ L + P S MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIHTHNTLGSLNILLLTLTAQELPNSWANNLMWLAYTMAFMVKMPLYGL 212 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA ++LK+GGYG +R +L L PL +++ A LSL +I Sbjct: 213 HLWLPKAHVEAPIAGSMMLAAVLLKLGGYGMMRLMLILNPL-TKHMAYPFLALSLWGMIM 271 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 S +S+ QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 272 TSSISLRQTDLKSLIAYSSISHMALVVAAILIQTPWSFTGAVVLMIAHGLTSSLLFCLAN 331 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 Y+R H+R + GL +P A+ ++ ++AN+ LP T +GE V+++ F SNT Sbjct: 332 SNYERTHSRIMILSQGLQTLLPLMALWWLLASLANLALPPTINLLGELSVLVTTFSWSNT 391 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +L ++++ALYSL+++ +G + +K RE +++ PI +L++ Sbjct: 392 TLLLTGSNMLITALYSLYMFTTTQWG-PLTHHITNMKPSFTRENILMFMHLSPILLLSL 449 >gi|206889786|ref|YP_002248939.1| NADH-quinone oxidoreductase chain m, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741724|gb|ACI20781.1| NADH-quinone oxidoreductase chain m, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 479 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 137/466 (29%), Positives = 242/466 (51%), Gaps = 9/466 (1%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFG-VALGISTINFIFSLFVWSVFDKGRSSFQM 64 + ++ P LG F+I G R +AL S+++FI +L + FD+ + FQ Sbjct: 4 IELILIFPLLGAFLIW-----KIGIRKIVNLIALMSSSLSFIMALIYYLNFDRTKKGFQF 58 Query: 65 IEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123 + Y WI + ++ LG D I+ V+LTTF+T IL + K+I++ +M L+L Sbjct: 59 LTSYEWISAWQLNFTLGFDHINSPFVLLTTFITLAIILLATKTIKDKISSFMSLLLLLSV 118 Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183 V F+S + L F+ F+EA LIP ++I WGG A+ KF +YTF SIF+ AI+ Sbjct: 119 SVNAFFMSTNFLQFFFFYEAMLIPAVLLIQRWGGENSFQASIKFLIYTFGFSIFLFLAII 178 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + + S L + K + + + F +F +KIP+ P H WL +A+ +A Sbjct: 179 ATYYYGGSFSFTSLENL-KISETAKLLLLFGFILAFFVKIPIVPLHGWLKDAYYEAAMPV 237 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 ++FL+ ++ KMG YG +R ++P F I LI+ +Y++ +++ +IK L Sbjct: 238 TIFLSAVLGKMGIYGILR-VIPYFNDILSVVNQWIILTCLISFVYSAFLALNSKNIKVLF 296 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AY S++H+G +T G F+G G +G + Q ++HG++++ALF+ ++ + D+ +G Sbjct: 297 AYMSLSHVGIITAGAFTGNLQGYQGVLLQSINHGILAAALFYVAELLNRETKSFDLEKFG 356 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 L +P MA G PG + F GE L++ +F+ + + + FGV L +Y Sbjct: 357 ALSKRVPALTFFTFSLIMAMGGFPGLNYFNGELLLLSGIFRENLFLGFIGVFGVALGVVY 416 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 W + +V E ++D+ E + + +++++ G+ P Sbjct: 417 LSWFFYRVYLRKPGAELSTYVRDVISWELFFLAILLLISIYLGLNP 462 >gi|14587570|gb|AAK70574.1|AF224630_4 NADH dehydrogenase subunit 4 [Microcebus ravelobensis] gi|14587591|gb|AAK70586.1|AF224633_4 NADH dehydrogenase subunit 4 [Microcebus ravelobensis] gi|46403426|gb|AAS92720.1| NADH dehydrogenase subunit 4 [Microcebus ravelobensis] gi|46403431|gb|AAS92724.1| NADH dehydrogenase subunit 4 [Microcebus ravelobensis] gi|46403436|gb|AAS92728.1| NADH dehydrogenase subunit 4 [Microcebus ravelobensis] gi|46403441|gb|AAS92732.1| NADH dehydrogenase subunit 4 [Microcebus ravelobensis] gi|47587654|gb|AAT35845.1| NADH dehydrogenase subunit 4 [Microcebus ravelobensis] gi|145567077|gb|ABP81883.1| NADH dehydrogenase subunit 4 [Microcebus ravelobensis] gi|145567082|gb|ABP81887.1| NADH dehydrogenase subunit 4 [Microcebus ravelobensis] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/383 (32%), Positives = 205/383 (53%), Gaps = 13/383 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L++ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKEPLMRKKLYLSMLTFLQTFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSMGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMPNLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYMLTMTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMV 455 G + +K RE ++ Sbjct: 416 RG-KFTHHIYNIKPSYTRENTLM 437 >gi|50302011|gb|AAT74317.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065525|gb|ABY79857.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065805|gb|ABY80117.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|225543884|gb|ACN91396.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|225543898|gb|ACN91409.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|225543912|gb|ACN91422.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|225543926|gb|ACN91435.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 207/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|75069919|sp|Q591M5|NU4M_MICSI RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|46403581|gb|AAS92844.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] gi|46403586|gb|AAS92848.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] gi|46403591|gb|AAS92852.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] gi|46403596|gb|AAS92856.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] gi|46403601|gb|AAS92860.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] gi|46403606|gb|AAS92864.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] gi|46403611|gb|AAS92868.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] gi|46403616|gb|AAS92872.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] gi|46403621|gb|AAS92876.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/364 (34%), Positives = 194/364 (53%), Gaps = 30/364 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKEPLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAI-------------V 183 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ V Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLV 178 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + W + TSS+ +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 179 MNMWSQDTSSLWS-----------SNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L P P I L L +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALY Sbjct: 347 GLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALY 406 Query: 424 SLWL 427 SL++ Sbjct: 407 SLYM 410 >gi|157367464|gb|ABV45597.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|157367478|gb|ABV45610.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] gi|157367492|gb|ABV45623.1| NADH dehydrogenase subunit 4 [Mammuthus primigenius] Length = 460 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 200/383 (52%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++LT +L P +++S + + Y+ ++L+ +I F + D++L Sbjct: 58 LDSLSTPLLILTIWLLPLMLIASQSHLSSGSTFQKKSYITTIILLQVSLIMTFAATDLIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FE +LIP +II WG ER+ A F YT GS+ +L ++++ + T + Sbjct: 118 LYIMFETTLIPTMIIITRWGNQLERLNAGSYFLFYTLMGSLPLLVTLMLI---QNTLGSL 174 Query: 196 DLYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +L + SI W +W+ +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 NLMMLPYLAKSIDNLWSTNMLWLTCTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL + P + LSL ++ S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMLRITILLDPLTMHMYYPFLM-LSLWGMVMTSSICLRQTDMKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V I I GA+ M++HGL SS LF Y+R+H+R + GL +P Sbjct: 294 MALVIIAIMLQTPWSFMGALALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++ NM P T IGE L+I + F SN V+++ +Y+L + Sbjct: 354 LMATWWLLASLTNMAPPPTINLIGELLIITTSFSWSNLTIFPMGLNVLITTMYTLHMMTT 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G + +K RE Sbjct: 414 TQRG-KTSHHAKSIKPSFTRENT 435 >gi|53686372|ref|YP_097111.1| NADH dehydrogenase subunit 4 [Batrachoseps wrightorum] gi|51979879|gb|AAU20548.1| NADH dehydrogenase subunit 4 [Batrachoseps wrightorum] Length = 458 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 203/358 (56%), Gaps = 11/358 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE----YMIAFLVLESMVIGAFLS 131 + ++G+D IS L+VLT +L P IL+S ++ N Y+ ++L+ M+I AF S Sbjct: 53 NKYMGLDQISSPLLVLTCWLLPLMILASQNHLKMNPHNRQQMYVSMLVILQFMLIMAFSS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L +++++ Sbjct: 113 TELVLFYITFEATLIPTLIVITRWGNQTERLSAGTYFLFYTLAGSLPLLISLLLLSCNMY 172 Query: 191 TSSIIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + S+ L A S+ F + +W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 173 SLSM-TLLATSQEMFMMTTTNKLLWFGCLTAFMVKMPLYGAHLWLPKAHVEAPVAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG IR + PL + +I L+L I+ L+ QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGIIRVTMMFTPLVELSYPFII--LALWGILMTGLICTRQTDLKSLIAYSS 289 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GA+ M+SHGL+SSALF Y+R H+R + G Sbjct: 290 VSHMGLVVASALIQTPWSFTGAIMLMISHGLISSALFCLANTNYERTHSRTMLLARGSQA 349 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P ++ ++NM LP T+ GE +++++++ S +L G +++A Y+L Sbjct: 350 VLPLLTTWWLISNLSNMALPPTTNLWGELMIMIALYNWSPWTIMLTGLGTLVTATYTL 407 >gi|238800153|gb|ACR55943.1| NADH dehydrogenase subunit 4 [Anilius scytale] Length = 451 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 195/364 (53%), Gaps = 11/364 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 H+ +D IS L+V++ +L P IL+S K+I + R +M +VL+ + F + + Sbjct: 55 HMNLDPISAPLLVMSFWLLPLTILASQKTISLEPTQRQRTFMTTLMVLQMFISMTFAASN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 + + Y+ FEA+LIP ++I WG ER+ A F +YT S+ +L AI+ + + T Sbjct: 115 LTMMYVMFEATLIPTLILITRWGQQPERLTAGTYFIMYTLATSMPLLMAILFLNNKSNTP 174 Query: 193 SIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L+ M+ P + +W+A +F K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 T---LFFMTMEPHTAWTTLLLWLACLTAFFAKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 231 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L + F P + LSL I A+L + QTD+K LIAYSS++H Sbjct: 232 LLKLGGYGIIRIMQVLPTSKTDLFMPFL-ILSLWGAILANLTCLQQTDLKSLIAYSSVSH 290 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V + GAM M++HG SS LF + Y+R HTR + G + MP Sbjct: 291 MGLVIAATMIQTPWALSGAMALMIAHGFTSSMLFCLANINYERTHTRILILTRGFHNIMP 350 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + + N+ P + F E L+ ++F T +L ++++A YSL ++ Sbjct: 351 LMTTWWLGANLMNIAFPPSMNFTAELLITSALFNWCPTTIILMGMSILITASYSLHMFLS 410 Query: 431 VVFG 434 G Sbjct: 411 TQTG 414 >gi|30142180|gb|AAP13862.1| NADH dehydrogenase subunit 4 [Etheostoma squamiceps] Length = 461 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 199/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L++LT +L P +L+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLILTCWLLPLMLLASQGHTASEPLNRQRMYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLLQNSSGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLMTLQFSDPLQLTSLADKLW-WAGCLMAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIVIILEPLTKDLSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S L G++++A YSL+++ Sbjct: 354 PLMTAWWFIASLANLALPPLPNLMGELMIVTSLFNWSWWTLALTGAGMLITASYSLYMF 412 >gi|254674833|dbj|BAH86362.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] Length = 452 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 214/383 (55%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ + + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLLYQRVFVGCQVFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 GSLALDLSYEGVFQLSYLVNFW-WVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGATAMLSSEVFLALALWGIVVMGGICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLSGSRGLIMI 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ + ++ NM LP GE + +++++ S V S G VL+A YSL+L+ Sbjct: 349 FPLISLGWFLMSLMNMALPPAINLFGELVAMVALYNWSPYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +G + + + L ++ RE Sbjct: 409 GMSQWG-NTMKNYKNLYTITSRE 430 >gi|6137811|ref|NP_009288.1| NADH dehydrogenase subunit 4 [Loxodonta africana] gi|5852113|emb|CAA12147.1| NADH dehydrogenase subunit 4 [Loxodonta africana] gi|218783289|dbj|BAH03667.1| NADH dehydrogenase subunit 4 [Loxodonta africana] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/388 (32%), Positives = 205/388 (52%), Gaps = 21/388 (5%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++LT +L P +++S + + Y+ ++L+ +I F + D++L Sbjct: 58 LDSLSTPLLILTIWLLPLMLIASQSHLSSGSTFQKKSYITTIILLQVSLIMTFAATDLIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FE +LIP VII WG ER+ A F YT GS+ +L ++++ + T + Sbjct: 118 LYIMFETTLIPTMVIITRWGNQLERLNAGSYFLFYTLMGSLPLLVTLMLI---QNTLGSL 174 Query: 196 DLYAMSKFPFSIQ----YW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 +L + P+ I+ W +W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 175 NLMML---PYLIKPIDNLWSTNMLWLTCTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R + L PL + + P + LSL ++ +S + + QTD+K LIAYSS Sbjct: 232 AAILLKLGGYGMLRITILLDPLTTHMYYPFLM-LSLWGMVMSSSICLRQTDMKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V I I GA+ M++HGL SS LF Y+R+H R + GL Sbjct: 291 VSHMALVIIAIMLQTPWSFMGALTLMIAHGLTSSMLFCLANSNYERIHNRTMILARGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ NM P T IGE L+I + F SN V+++ +Y+L + Sbjct: 351 LLPLMATWWLLASLINMAPPPTINLIGELLIITTSFSWSNLTIFPMGLNVLITTMYTLHM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + +K RE ++ Sbjct: 411 MTTTQRG-KTSHHAKSIKPSFTRENTLM 437 >gi|294774385|dbj|BAJ05666.1| NADH dehydrogenase subunit 4 [Canis lupus] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 123/353 (34%), Positives = 198/353 (56%), Gaps = 8/353 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL + A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLLLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP T IGE V+MS F SN +L + ++ALYSL++ Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINITITALYSLYM 410 >gi|108742816|gb|ABG01997.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/393 (33%), Positives = 211/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLMVALVYVRNSLGSLNYLV 178 Query: 197 LYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +S+ S+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MIMLSQNLPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP IGE VIM+ F SN ++ V+++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPFINLIGELFVIMTSFSWSNLTIIMTGLNVLITALYSLYMLTMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +LT+ Sbjct: 418 -KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|110432545|gb|ABG73856.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] Length = 459 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/402 (31%), Positives = 207/402 (51%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKEPWERKKHFLSVLISLQLFLIMTFTAAELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+ +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWTQELPNSWSSNLMWMECIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHSRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ + N+ +P + +GE + M+VF SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLAGLTNLAMPPSINLVGELFITMAVFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGEPPYHAHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|49616798|ref|YP_044774.1| NADH dehydrogenase subunit 4 [Smaug warreni] gi|49256954|dbj|BAD24759.1| NADH dehydrogenase subunit 4 [Smaug warreni] Length = 457 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/370 (35%), Positives = 201/370 (54%), Gaps = 12/370 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F S LG+D IS L +L+ +L P I++S + R +++ ++L++ +I F Sbjct: 52 FLSPFLGLDMISTPLTILSCWLLPLMIMASQHHLNSEPLSRKRTFLMTLILLQTTLILTF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++ LFYI FE +LIP ++I WGG +ER+ A F YT GS+ +L AI+ Sbjct: 112 SATELTLFYILFETTLIPTLILITRWGGQAERLTAGIYFLFYTLLGSMPLLVAILYFYTT 171 Query: 189 KKTSSIIDLYAM----SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 K T+S+ D+ + + P S +W A +F +K+P++ FH WLP AHV+AP AGS Sbjct: 172 KMTTSM-DMMPLLQTNTNTPKSFSL-LWTACMLAFLVKMPLYGFHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R + P S P I L+L +I S + QTD+K LIA Sbjct: 230 MVLAAILLKLGGYGIMRIIPNFMPPTSTLCYPFIT-LALWGLIMTSATCLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+ HMG V + GA+ M++HGL SSALF Y+R +R + G Sbjct: 289 YSSVGHMGLVISASMIQTPWSISGAIALMIAHGLTSSALFCLANTNYERTQSRTLLFARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P A ++ + N+ LP T I E ++ S+F S +L G +L+A YS Sbjct: 349 MQLILPLMATWWLLTCLMNLALPPTINLISELTIMSSLFNWSPPTIILTGLGTLLTATYS 408 Query: 425 LWLYRKVVFG 434 L+++ G Sbjct: 409 LYMFLSTQRG 418 >gi|156186502|gb|ABU55495.1| NADH dehydrogenase subunit 4 [Boraras urophthalmoides] Length = 460 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 203/386 (52%), Gaps = 13/386 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L +D +S ++LT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLAMDPLSAPFMILTCWLLPLMILASQNHINSEPINRQRLYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLAGSLPLLVALMLL--QQTTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYTEPMTFNSWGYKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R ++ L + P I L++ II + + QTD+K LIAYSS+ Sbjct: 234 AILLKLGGYGMMRMMIVLDAFNKELAYPFII-LAMWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SS LF Y+R+H+R + GL Sbjct: 293 SHMGLVAGGILIQTTWGFAGAIALMIAHGLTSSMLFCLANTTYERVHSRTMMLIRGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE +I ++F S L G +++A YSL+++ Sbjct: 353 FPLTATWWFIANLANLALPPLPNLVGELTIITTMFNWSPWTITLTGLGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCM 454 G + L RE + Sbjct: 413 LMTQRG-QMPNHIMNLPPYHTREHLL 437 >gi|14587556|gb|AAK70566.1|AF224628_4 NADH dehydrogenase subunit 4 [Microcebus murinus] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 132/392 (33%), Positives = 205/392 (52%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLMKESLTRKKLYLSMLISLQMFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV------------V 184 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ V Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQISLGSLNYLV 178 Query: 185 MC-WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 M W + TSS P+S +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 179 MNFWFQDTSS----------PWSSNL-LWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L P+ P I L L +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMLRLTIILNPMTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP IGE VIM+ F SN + ++++ALY Sbjct: 347 GLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNITIAMTGLNMLITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 SL++ G + +K RE ++ Sbjct: 407 SLYMLTMTQRG-KFTYHIHNIKPSYTRENTLM 437 >gi|46403481|gb|AAS92764.1| NADH dehydrogenase subunit 4 [Microcebus sp. EELHDZ M98] gi|46403501|gb|AAS92780.1| NADH dehydrogenase subunit 4 [Microcebus jollyae] gi|46403506|gb|AAS92784.1| NADH dehydrogenase subunit 4 [Microcebus sp. EELHDZ VEV33] gi|46403511|gb|AAS92788.1| NADH dehydrogenase subunit 4 [Microcebus sp. EELHDZ VEV35] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/364 (34%), Positives = 194/364 (53%), Gaps = 30/364 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L++ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQTFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAI-------------V 183 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ V Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLV 178 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + W + SS+ +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 179 MNTWSQDMSSLWS-----------SNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L P P I L L +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALY Sbjct: 347 GLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALY 406 Query: 424 SLWL 427 SL++ Sbjct: 407 SLYM 410 >gi|50301941|gb|AAT74252.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|50301997|gb|AAT74304.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166065959|gb|ABY80260.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|166066281|gb|ABY80559.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 207/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGSQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|189492746|gb|ACE01448.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 204/389 (52%), Gaps = 29/389 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLY---------IHN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 F IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 FMGSLNF-LMIQYWIQPLPNSWSNILLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KYSHHIKNIKPSFTRENA 435 >gi|156186478|gb|ABU55484.1| NADH dehydrogenase subunit 4 [Rasbora cf. bankanensis CTOL00508] Length = 460 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/360 (35%), Positives = 199/360 (55%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 ++ D +S +VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YMATDPLSTPFLVLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQTCLIMAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FE +LIP +II WG +ER+ A F YT GS+ +L A++++ ++KT Sbjct: 116 IIMFYIMFETTLIPTLIIITRWGNQAERLNAGIYFLFYTLAGSLPLLVALLLL--QQKTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYTQPLMLSPWSHTIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R ++ L L + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AILLKLGGYGMMRMMIVLDALNKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG V GI G GA+ M++HGL SS LF Y+R+H+R + GL Sbjct: 293 GHMGLVVGGILIQTTWGFSGAIALMIAHGLTSSMLFCLANTTYERVHSRTMILVRGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + +AN+ LP +GE +I ++F S V+ G +++A YSL+++ Sbjct: 353 LPLTTTWWFIANLANLALPPLPNLVGELTIITTMFYWSPWTIVVTGMGTLITASYSLYMF 412 >gi|145567102|gb|ABP81903.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/394 (32%), Positives = 211/394 (53%), Gaps = 17/394 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLIFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + +K S Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QKSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS +F Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMVFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP IGE VIM+ F SN ++ F ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNMLITALYSLYMLTMTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLT 462 G + +K RE + + P+ +LT Sbjct: 416 RG-KFTYHIHNIKPSYTRENTLMSMHMLPLIMLT 448 >gi|215979703|ref|YP_002333202.1| NADH dehydrogenase subunit 4 [Takifugu xanthopterus] gi|215422653|dbj|BAG85492.1| NADH dehydrogenase subunit 4 [Takifugu xanthopterus] Length = 460 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 210/387 (54%), Gaps = 11/387 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPPLGQLELTSYADKIW-WAGCILAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRILVTLDPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMMLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGLTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRER 452 +++ G + + L+ RE Sbjct: 410 YMFLMTQRGPAP-NHLLALEPSHTREH 435 >gi|332887136|dbj|BAK23234.1| NADH dehydrogenase subunit 4 [Trigonostigma espei] Length = 460 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 206/387 (53%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 ++ D +S + LT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YMATDPLSTPFLTLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLAGSLPLLIALLLL--QQTTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P ++ W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYAQPIALNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R ++ L + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AILLKLGGYGMMRMMIVLDAFNKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SS LF Y+R+H+R + GL Sbjct: 293 SHMGLVAGGILIQTTWGFSGAIALMIAHGLTSSMLFCLANTTYERIHSRTMILIRGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE +I ++F S +L G +++A YSL+++ Sbjct: 353 FPLAATWWFIANLANLALPPLPNLVGELTIITTMFNWSPWTIMLTGMGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 413 LMTQRG-QMPSHITNLPPYHTREHLLM 438 >gi|166065945|gb|ABY80247.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493684|gb|ACE02319.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 207/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGSQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|315426733|dbj|BAJ48357.1| multicomponent Na+:H+ antiporter subunit D [Candidatus Caldiarchaeum subterraneum] Length = 495 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 142/485 (29%), Positives = 244/485 (50%), Gaps = 26/485 (5%) Query: 1 MNLPFLSIVTFLPF-LGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVW-SVFDKG 58 +++P LS+ FLP + FV L GR + + A S++ + L V+ S+ Sbjct: 7 LDIPLLSLAVFLPIAMTPFVYL------VGRVASWRAAYLFSSVVLLVPLAVFLSLTPMV 60 Query: 59 RSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FREYM 115 + E Y W+ + S L +D +S V+L T + + S K +++ Y Sbjct: 61 LNGVGFHEEYEWVPFLGLSVGLVLDSLSYPFVLLITLVGFLATVYSGKYMEKEHGLTSYF 120 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGS 175 + +IG L ++ LFYIF+E LIP + +I WG +K+F++T G+ Sbjct: 121 TLLTLFVGGMIGVVLVSNLFLFYIFWELMLIPSYALIAYWGTGNPRLIGFKYFIFTHAGA 180 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPF-------SIQYWMWIAFFCSFAIKIPMFPF 228 + +L I W ++++++S+ + + + F A+K+ +FPF Sbjct: 181 LSLLIGI---AWLAAVFGDLNIFSLSEKAMLASETLRPVLTSIAVLIFIGAAVKMAVFPF 237 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 HTWLP+AH +APT SV L+G+M+K G Y R +L + P I L+LI++++ Sbjct: 238 HTWLPDAHAEAPTPISVLLSGVMIKTGVYAVARLVLGIMPFTMMDLRLPIAILALISMVW 297 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 ++++VQ+D+K+L+AYSSI+ +GY+ G+ + +GV+GA+F +L+HG S LF G Sbjct: 298 GGVMALVQSDVKRLLAYSSISQIGYIVFGLAAANLAGVQGALFHVLNHGFAKSLLFMAAG 357 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 V+ +H RDI GGL MP + M+V ++ G P GF+ E+++ + + Sbjct: 358 VLIHEVHERDIRKLGGLSSKMPLTTIAMLVGGLSIAGTPPLGGFMSEWMIFAGGVEAGWS 417 Query: 409 VAV-LASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI 467 + V +A F ++A Y L + R V FG + E +D + P+ L + G Sbjct: 418 IFVAVAVFATAITAGYYLRMVRAVFFGEGRVEG----RDPGALMTAPMSPLLALVIVLGF 473 Query: 468 YPVPI 472 PI Sbjct: 474 LASPI 478 >gi|195182415|emb|CAQ68465.1| NADH dehydrogenase subunit 4 [Melursus ursinus] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 129/390 (33%), Positives = 207/390 (53%), Gaps = 29/390 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ ++I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLILLQLLLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLHT--QNNLGSLN 175 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 L +QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 176 FLM--------MQYWTQPLPNSWSSIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL S P + LSL ++ S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLGPLTSSMAYPFMM-LSLWGMVMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+++ F SN L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLMGELFVVVATFSWSNITITLMGANIIITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SL++ G + V+ +K RE Sbjct: 407 SLYMLITTQRG-KYTDHVKNIKPSFTRENA 435 >gi|189492774|gb|ACE01474.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492886|gb|ACE01578.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492956|gb|ACE01643.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189492970|gb|ACE01656.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493012|gb|ACE01695.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493026|gb|ACE01708.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|189493082|gb|ACE01760.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] gi|294679615|gb|ADF29619.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 204/389 (52%), Gaps = 29/389 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLY---------IHN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 F IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 FMGSLNF-LMIQYWIQPLPNSWSNILLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KYSHHIKNIKPSFTRENA 435 >gi|31095755|gb|AAP43205.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] Length = 456 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 204/374 (54%), Gaps = 18/374 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYTNKF----MAMDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L +++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 TLTALLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM ++ ++L S F + +W+A +F +K+P++ H WLP Sbjct: 162 LMALLVM---NNSTDHLNLMMFSTFKLNTTSLTNDTLWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR L P Y+ P I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIRISPILQPTEKLYY-PFIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M +HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMTAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S ++ + Sbjct: 337 NSRTLITMRGLQKTSSLMTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFLMPA 396 Query: 415 FGVVLSALYSLWLY 428 G VL+A Y++ ++ Sbjct: 397 IGTVLTAAYTMHMF 410 >gi|9828539|gb|AAG00227.1| NADH dehydrogenase subunit 4 [Ochotona alpina] Length = 460 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 210/361 (58%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ LVL + +I F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKENLSRKKLFISMLVLLQIFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|28881979|ref|NP_795790.1| NADH dehydrogenase subunit 4 [Glossanodon semifasciatus] gi|28804908|dbj|BAC58195.1| NADH dehydrogenase subunit 4 [Glossanodon semifasciatus] Length = 460 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 200/365 (54%), Gaps = 10/365 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S + + R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSTPLLVLSCWLLPLMILASQNHMALEPKNRQRTYISLLTSLQMFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++LF+I FEA+L+P +II WG +ER+ A F YT GS+ +L +++++ T Sbjct: 116 IILFFIMFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVSLLLLQNHTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMLILPYSQPLHLSSYGDKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIMVLLDPLTKELAYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 294 HMGLVASGILIQTPWGFTGAIILMIAHGLASSALFCLANTSYERTHSRTMLLARGLQMIF 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A + +AN+ LP +GE ++I S+F S L G +++A YSL+L+ Sbjct: 354 PLTATWWFLANLANLALPPLPNLMGELMIITSMFNWSPWTIALTGTGTLITASYSLYLFL 413 Query: 430 KVVFG 434 G Sbjct: 414 TTQRG 418 >gi|229918869|ref|YP_002887529.1| NADH dehydrogenase subunit 4 [Xiphias gladius] gi|229619876|dbj|BAH58236.1| NADH dehydrogenase subunit 4 [Xiphias gladius] Length = 460 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 198/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P L+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMTLASQNHMSSEPINRQRMYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 VIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSDPLYLNSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMVMLEPLTKDLSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLMATWWFFASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMF 412 >gi|75052613|sp|Q591Y7|NU4M_MICSM RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|46403446|gb|AAS92736.1| NADH dehydrogenase subunit 4 [Microcebus sambiranensis] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 129/394 (32%), Positives = 211/394 (53%), Gaps = 17/394 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLIFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMSGLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP IGE VIM+ F SN ++ F ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGFNMLITALYSLYMLTMTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLT 462 G + +K RE + + P+ +LT Sbjct: 416 RG-KFTYHIHNIKPSYTRENTLMSMHMLPLIMLT 448 >gi|21449925|ref|NP_659245.1| NADH dehydrogenase subunit 4 [Arctocephalus forsteri] gi|21397137|gb|AAM51816.1|AF513820_9 NADH dehydrogenase subunit 4 [Arctocephalus forsteri] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 119/331 (35%), Positives = 182/331 (54%), Gaps = 11/331 (3%) Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + ++++FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ M Sbjct: 110 FAATELIMFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYMQN 169 Query: 188 EKKTSS-IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 T + ++ Y P S W +W+A +F +K+P++ H WLP AHV+AP A Sbjct: 170 NMGTLNFLVAQYWTQTLPNS---WSNILLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L PL S + A LS+ +I S + + QTD+K L Sbjct: 227 GSMVLAAVLLKLGGYGMMRITILLNPLTS-FMAYPFMMLSMWGMIMTSSICLRQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HM V + I GA M++HGL SS LF Y+R H+R + Sbjct: 286 IAYSSVSHMALVIVAILIQTPLSYMGATALMIAHGLTSSMLFCLANSNYERTHSRIMILA 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A ++ ++ N+ LP T IGE LV+M+ F SN +L ++++AL Sbjct: 346 RGLQTLLPLMAAWWLLASLTNLALPPTINLIGELLVVMASFSWSNATIILMGVNIIITAL 405 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 YSL++ G ++ +K RE Sbjct: 406 YSLYMLITTQRG-KHTHHIKNIKPSFTRENT 435 >gi|39980695|ref|NP_950233.1| NADH dehydrogenase subunit 4 [Eurypharynx pelecanoides] gi|38453925|dbj|BAD02180.1| NADH dehydrogenase subunit 4 [Eurypharynx pelecanoides] Length = 460 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/360 (36%), Positives = 203/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 HL D +S L+VL+ +L P IL+S + R Y+ ++L+ +I AF + + Sbjct: 56 HLATDPLSTPLLVLSCWLLPLMILASQNHMNPEPLTRQRSYITLLILLQLALILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A+++M ++ T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLMMYKDQGTL 175 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S+ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SMWMLQHTK--PLILSSWGNKLWWAGCLMAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P + PVI L+L +II ++ + Q D+K +IAYSS+ Sbjct: 234 AVLLKLGGYGMMRIFMILTPPTKEMSYPVII-LALWSIIMTGIICLRQIDLKSMIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HMG VT GI GA M+SHGL SS LF Y+R+H+R + GL Sbjct: 293 GHMGLVTGGIMIQTPWSFAGATILMISHGLASSTLFCLANTNYERIHSRMLLLARGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A+ + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 353 LPLAAIWWLAASLANLALPPLPNLMGELMIISSIFNWSQWSIILTGLGTLITAGYSLYMF 412 >gi|208433914|ref|YP_002265636.1| NADH dehydrogenase subunit 4 [Chilomycterus reticulatus] gi|207367097|dbj|BAG72069.1| NADH dehydrogenase subunit 4 [Chilomycterus reticulatus] Length = 460 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 132/392 (33%), Positives = 209/392 (53%), Gaps = 21/392 (5%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + H+ D +S L++LT +L P IL+S + R Y+ L+ +I AF Sbjct: 52 FLNPHMATDPLSTPLLILTCWLLPLMILASQNHMMTEPLNRQRTYISLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM--- 185 + ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEVIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNT 171 Query: 186 -----CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + +S +DL ++ + W W +F +K+P++ H WLP AHV+AP Sbjct: 172 TGTLSLLTLQYTSPLDLTT-----YATKLW-WAGCIIAFLVKMPLYGVHLWLPKAHVEAP 225 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGS+ LA ++LK+GGYG +R L L PL + P I L+L II + + QTD+K Sbjct: 226 IAGSMILAAVLLKLGGYGMMRILTVLDPLTKELSYPFII-LALWGIIMTGSICLRQTDLK 284 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 LIAYSS++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + Sbjct: 285 SLIAYSSVSHMGLVVGGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMI 344 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL +P + ++AN+ LP +GE ++I+S+ S L G +++ Sbjct: 345 LARGLQMALPLMTAWWFIASLANLALPPLPNLMGELMIIVSLLNWSWWTLALTGAGTLIT 404 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 A YSL+++ G + + L+ RE Sbjct: 405 AGYSLYMFLMTQRGPTPAHII-SLEPSHSREH 435 >gi|189492858|gb|ACE01552.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 207/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYVSMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGSQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|32402563|ref|NP_861511.1| NADH dehydrogenase subunit 4 [Elephantulus sp. VB001] gi|32188018|dbj|BAC78434.1| NADH dehydrogenase subunit 4 [Elephantulus sp. VB001] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/367 (34%), Positives = 192/367 (52%), Gaps = 27/367 (7%) Query: 118 FLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSI 176 ++L+ +I F S +M++FYI FEA+LIP +II WG +ER+ A F YT GS+ Sbjct: 99 LILLQLFLIMTFASSEMIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSL 158 Query: 177 FMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI-QYW------------MWIAFFCSFAIKI 223 +L +V + M F I QYW +W+A +F +K+ Sbjct: 159 PLLIILVSLQ-----------NTMGSLNFMILQYWTKPMDPSWSSNLIWLACMMAFMVKM 207 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 P++ H WLP AHV+AP AGS+ LA I+LK+GGYG +R L L P+ + P I LSL Sbjct: 208 PLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITLILEPITTTMSYPFIL-LSL 266 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 +I S + + QTD+K LIAYSS++HM V + + GA M++HGL SS L Sbjct: 267 WGMIMTSSICLRQTDLKSLIAYSSVSHMALVILAVMIQTPWSFMGATTLMIAHGLTSSVL 326 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 F Y+R+H+R + GL P A ++ ++AN+ LP + IGE ++I+S F Sbjct: 327 FCLANSNYERVHSRTMILARGLQTIFPLMASWWIIASLANLALPPSINLIGELIIIVSSF 386 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 SN +L ++++A+YSL++ G + + S RE ++ + V Sbjct: 387 SWSNLTIILLGLNMLITAMYSLYMLIMTQRG-KTTHHIITMNPTSTRENALMALHLIPLV 445 Query: 464 FFGIYPV 470 I PV Sbjct: 446 LLSINPV 452 >gi|16357300|ref|NP_443394.1|ND4_15820 NADH dehydrogenase subunit 4 [Poromitra oscitans] gi|16267101|dbj|BAB70244.1| NADH dehydrogenase subunit 4 [Poromitra oscitans] Length = 460 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 203/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + Q R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHMTLEPQNRQRMYITLLTSLQVFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + T S Sbjct: 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNDTGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQYTKPLQLTSYADKLW-WAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMVMMLDPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G G++ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVAGGILIQTPWGFTGSLILMIAHGLASSALFCLANTNYERTHSRTMVLARGLQMVLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 ++ + AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 355 LMTAWWLIASFANLALPPLPNLMGELMIITSLFNWSWFTLLLTGTGTLITAGYSLYMF 412 >gi|14587584|gb|AAK70582.1|AF224632_4 NADH dehydrogenase subunit 4 [Microcebus ravelobensis] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/395 (32%), Positives = 211/395 (53%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L++ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKEPLMRKKLYLSMLTFLQTFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSMGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMPNLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP +GE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLVGELFVIMASFSWSNLTIIMTGLNMLITALYSLYMLTMTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + +K RE + + P+ +LT+ Sbjct: 416 RG-KFTHHIYNIKPSYTRENTLMSMHMLPLIMLTL 449 >gi|47587978|gb|AAT35892.1| NADH dehydrogenase subunit 4 [Propithecus verreauxi verreauxi] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 201/359 (55%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S +++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQYHLKKEPWLRKKSYLSMLISLQVFLVMTFTANELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHL---QNSMGSLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L M+ + P S W +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA Sbjct: 176 LLTMNLWLKELPNS---WSSNLLWMACIMAFMVKMPLYGFHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITIILDPTTKSMAYPFLM-LCLWGMIMTSSYCLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE V+M+ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPSINLIGELFVMMASFSWSNISIILMGLNMLITALYSLYM 410 >gi|5835523|ref|NP_007546.1|ND4_13725 NADH dehydrogenase subunit 4 [Branchiostoma lanceolatum] gi|6093568|sp|O79421|NU4M_BRALA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|3293000|emb|CAA76256.1| NADH dehydrogenase subunit 4 [Branchiostoma lanceolatum] gi|254674819|dbj|BAH86349.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] gi|254674847|dbj|BAH86375.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] gi|254675015|dbj|BAH86531.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] gi|254675029|dbj|BAH86544.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] gi|254675043|dbj|BAH86557.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] gi|254675057|dbj|BAH86570.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] gi|254675071|dbj|BAH86583.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] Length = 452 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 214/383 (55%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ + + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLIYQRVFVGCQVFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 GSLALDLSYEGVFQLSYLVNFW-WVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGATAMLSSEVFLALALWGIVVMGGICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLSGSRGLIMI 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ + ++ NM LP GE + +++++ S V S G VL+A YSL+L+ Sbjct: 349 FPLISLGWFLMSLMNMALPPAINLFGELVAMVALYNWSPYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +G + + + L ++ RE Sbjct: 409 GMSQWG-NTMKNYKNLYTITSRE 430 >gi|288903389|ref|YP_003434112.1| NADH dehydrogenase subunit 4 [Epinephelus septemfasciatus] gi|219562631|gb|ACL27779.1| NADH dehydrogenase subunit 4 [Epinephelus septemfasciatus] Length = 460 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/358 (34%), Positives = 202/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQSHMTTEPINRQRMYITLLTSLQIFLILAFGATEV 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYVMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLIALLLLQNYTGTLS 176 Query: 194 IIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L + + + + W W+ +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLPFSHPLHLSSNADKLW-WVGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL + P + F +L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMIIMLDPLTKELSYPFLIF-ALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQIILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE ++I S+F S VL G +++A Y+L+++ Sbjct: 355 LMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLVLTGGGTLITASYTLYMF 412 >gi|254674875|dbj|BAH86401.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] Length = 452 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 213/383 (55%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ + + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLIYQRVFVGCQVFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLFPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 DSLALDLSYEGVFQLSYLVNFW-WVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGATAMLSSEVFLALALWGIVVMGGICLRQTDVKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLSGSRGLIMI 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ + ++ NM LP GE + +++++ S V S G VL+A YSL+L+ Sbjct: 349 FPLISLGWFLMSLMNMALPPAINLFGELVAMVALYNWSPYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +G + + + L ++ RE Sbjct: 409 GMSQWG-NTMKNYKNLYTITSRE 430 >gi|159524400|ref|YP_001542751.1| NADH dehydrogenase subunit 4 [Melursus ursinus] gi|121592312|gb|ABM63248.1| NADH dehydrogenase subunit 4 [Melursus ursinus] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 129/390 (33%), Positives = 207/390 (53%), Gaps = 29/390 (7%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P +++S K + Y+ ++L+ ++I F +++++L Sbjct: 58 TDSLSAPLLALTTWLLPLMLMASQFHLSKETLTRKKLYITMLILLQLLLIMTFSAMELIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + S+ Sbjct: 118 FYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLHT--QNNLGSLN 175 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 L +QYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 176 FLM--------MQYWTQPLPNSWSSIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL S P + LSL ++ S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLGPLTSSMAYPFMM-LSLWGMVMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP T +GE V+++ F SN L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLTNLALPPTINLMGELFVVVATFSWSNITITLMGTNIIITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SL++ G + V+ +K RE Sbjct: 407 SLYMLITTQRG-KYTDHVKSIKPSFTRENA 435 >gi|238866858|ref|YP_002929318.1| NADH dehydrogenase subunit 4 [Otolemur crassicaudatus] gi|238809379|dbj|BAH69204.1| NADH dehydrogenase subunit 4 [Otolemur crassicaudatus] Length = 459 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/384 (32%), Positives = 204/384 (53%), Gaps = 14/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P I++S + + + Y+ + L++ +I F + +++LF Sbjct: 58 DTLSTPLLILTTWLLPLMIMASQHHLSKEPLTRKKLYITMLISLQTFLIATFSASELILF 117 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-I 195 YI FE +LIP ++I WG +ER+ A F YT GS+ +L A++ + S+ + Sbjct: 118 YILFETTLIPTLIVITRWGNQTERLNAGLYFLFYTLLGSLPLLVALIHT--QNFVGSLNL 175 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + A+ I W W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 SILALYLHDTPISPWSNSLTWLACMLAFLVKMPLYGTHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P + P + LSL I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITNILSPTTNIMPYPFLI-LSLWGTIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS +F Y+R+H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSLMFCLANSNYERIHSRTMILARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A+ + +AN+ LP T IGE ++I++ F S +L +++A+YSL+++ Sbjct: 355 MAIWWLTAGLANLALPPTINLIGELIIIITSFSWSKLTILLTGLNTLITAIYSLYMFITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G +K RE ++ Sbjct: 415 QRG-KPTYHTYNIKPSHTRENILM 437 >gi|30142176|gb|AAP13860.1| NADH dehydrogenase subunit 4 [Etheostoma percnurum] Length = 461 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 127/356 (35%), Positives = 196/356 (55%), Gaps = 10/356 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+ LT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLTLTCWLLPLMILASQNHTASEPITRQRMYITLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M++FY+ FEA+L+P +II WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 MIMFYVMFEATLVPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLLQNNXXTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S+I L + F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLITLQFSDSSQLTSFADKLW-WAGCLMAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRIVIMLEPLTKDLSHPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P + ++AN+ LP +GE +++ S+F S L G++++A YSL Sbjct: 354 PLMTAWWFIASLANLALPPLPNLVGEMMILTSLFNWSWWTLALTGAGMLITASYSL 409 >gi|108742821|gb|ABG02001.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] gi|108742826|gb|ABG02005.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] gi|108742836|gb|ABG02013.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] gi|108742891|gb|ABG02057.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 130/393 (33%), Positives = 211/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +S+ S+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MIMLSQNLPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP +GE VIM+ F SN ++ V+++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPFINLVGELFVIMTSFSWSNLTIIMTGLNVLITALYSLYMLTMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +LT+ Sbjct: 418 -KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|5836082|ref|NP_008065.1|ND4_15107 NADH dehydrogenase subunit 4 [Amblyraja radiata] gi|4406279|gb|AAD19938.1| NADH dehydrogenase subunit 4 [Amblyraja radiata] Length = 460 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 141/390 (36%), Positives = 225/390 (57%), Gaps = 19/390 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI--QENFRE--YMIAFLVLESMVIGAFLSLDM 134 LGVD +S L+ LT +L P +L+S K + + + R+ Y+ + L++++I AF + +M Sbjct: 57 LGVDPLSAPLLALTCWLLPLMLLASLKHLTAEPHKRQQIYISLLITLQTLLILAFSATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++V+ + T S Sbjct: 117 ILFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLIALLVLQKDLGTLS 176 Query: 194 IIDLYAMSKFP-------FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 ++ L ++P ++ ++W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 177 MLIL----QYPNISNLHSWANKFW-WAACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R ++ L PL + P + L++ II S + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRIIVMLNPLTKEMAYPFLI-LAIWGIIMTSSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V I GA M++HGLVSS LF Y+R+H+R + G Sbjct: 291 SVSHMGLVAAAILIQTPWSFAGATALMIAHGLVSSMLFCLANTNYERIHSRTLLLARGTQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + +AN+ LP + +GE L+I S+F+ SN +L GV+L+A YSL+ Sbjct: 351 IILPLMGTSWFLANLANLALPPSPNLMGELLIISSLFKWSNWTIILTGMGVLLTAAYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 ++ G + + + L RE ++Y Sbjct: 411 MFLMTQRGPTP-QHLLFLTPSHTREHLLMY 439 >gi|281190787|ref|YP_003345459.1| NADH dehydrogenase subunit 4 [Crassostrea hongkongensis] gi|187762842|gb|ACD35459.1| NADH dehydrogenase subunit 4 [Crassostrea hongkongensis] gi|220682089|gb|ACL80187.1| NADH dehydrogenase subunit 4 [Crassostrea hongkongensis] gi|220682102|gb|ACL80199.1| NADH dehydrogenase subunit 4 [Crassostrea hongkongensis] gi|226247238|gb|ACO40173.1| NADH dehydrogenase subunit 4 [Crassostrea hongkongensis] Length = 449 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 145/419 (34%), Positives = 218/419 (52%), Gaps = 23/419 (5%) Query: 51 VWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN 110 +WS F + + + FC VD S L+ LT ++ IL S S N Sbjct: 32 IWSAFSLTYWGGSGVSWESLSELFC-----VDIYSSSLISLTLWVCGISILVS--SAMLN 84 Query: 111 FREYMIAFLVLES----MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAY 165 R F VL + M++ F+ + +FY+ FE++L+PM IIG+WGG ER+ + Sbjct: 85 LRGVFNVFWVLVTLLCFMLVQCFMVNTLAMFYVLFESTLVPMISIIGIWGGQFERVPSIQ 144 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM-WIAFFCSFAIKIP 224 YT GS +L M E S + K F+ W+ W+A F F IK+P Sbjct: 145 YIAAYTVGGSFPLLLIFTSM--EVHAGSSFMWFISVKTNFN---WLFWLACFLGFLIKLP 199 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 FPFHTWLP AHVQAP GSV LAGI+LK+GGYG R ++ LF + F + LSL Sbjct: 200 AFPFHTWLPKAHVQAPVGGSVILAGILLKLGGYGITRVMM-LFSYTLESFGIFVIALSLY 258 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +Y +++ + Q+D+KKLIA+SS++HM + IG+FS + G+ GA ++SHG +SS LF Sbjct: 259 GSVYGAVMCIRQSDVKKLIAFSSVSHMAFPVIGLFSCTEVGLVGAYIMLVSHGFISSGLF 318 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G+ + +H+R I A V +P +V MAN+G+P I E L ++S Sbjct: 319 VLCGISSELVHSRKIKAMNESVRAIPSLGFFWLVMIMANLGVPPCPVIISEVLSVVSAVA 378 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC----MVYPIA 459 + + + +VLS YS LY ++ SK + ++ L++ ++YP+A Sbjct: 379 LWPWIFIPLALYLVLSGAYSFSLYCQLTSSKSKNKTEVLFGEVMLKDMKALYFLLYPLA 437 >gi|83309025|ref|YP_423971.1| NADH dehydrogenase subunit 4 [Dasyurus hallucatus] gi|55416198|gb|AAV50065.1| NADH dehydrogenase subunit 4 [Dasyurus hallucatus] Length = 459 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 203/371 (54%), Gaps = 12/371 (3%) Query: 67 YYHWIDYFCSYH--LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLV 120 +YH D +Y+ +D +S L++L+ +L P I++S + + Y+ ++ Sbjct: 42 FYHSSDLGYNYNNSFSLDSLSGPLLILSCWLLPLMIIASQSHLAHEPLVRKKIYLTMLII 101 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFML 179 L+ +I AF + ++++FY+ FE +LIP ++I WG +ER+ A F YT GS+ +L Sbjct: 102 LQLSLIMAFTASELIMFYVLFETTLIPTLIMITRWGNQNERLNAGLYFLFYTLVGSLPLL 161 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAH 236 A++ M + ++ + MS P +W A +F +K+P++ H WLP AH Sbjct: 162 VALLYMHNNLGSLHMLTMTLMSP-PLETSMSTSLLWYACMMAFMVKMPLYGLHLWLPKAH 220 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+AP AGS+ LA I+LK+GGYG +R P S P + LSL +I S + + Q Sbjct: 221 VEAPIAGSMVLAAILLKLGGYGIMRITAFTEPTTSTMCYPFMI-LSLWGMIMTSSICLRQ 279 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K LIAYSS++HMG V I G GA M++HGL SS LF Y+R+H+ Sbjct: 280 TDLKSLIAYSSVSHMGLVIIAALMQSPMGFMGATTLMIAHGLTSSMLFCLANTNYERIHS 339 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R + GL +P ++ ++AN+ P + +GE LVIM+ F SN +L Sbjct: 340 RTLILIRGLQMILPLMCAWWLLASLANLAQPPSINLLGELLVIMTSFSWSNFSLILLGTN 399 Query: 417 VVLSALYSLWL 427 V++A+YSL++ Sbjct: 400 TVITAMYSLYM 410 >gi|294486048|gb|ADE87896.1| NADH dehydrogenase subunit 4 [Ochotona roylei] Length = 404 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 207/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF---REYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F +++LF Sbjct: 3 DPLSTPLLILTFWLLPLMLIASQNHLSKETLSRKKLFISMLVLLQIFLIMTFSVTELILF 62 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ M T + + Sbjct: 63 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYMHNTTGTLNFLI 122 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + M++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 123 IQLMAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 181 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 182 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 240 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 241 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERTHSRTMILARGLQTILPLMA 300 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE L+I+S F SN +LA ++++ALY+L++ Sbjct: 301 AWWLLASLANLALPPSINLIGELLMIVSSFSWSNLTIILAGTNMLITALYTLYMLSTTQR 360 Query: 434 G 434 G Sbjct: 361 G 361 >gi|163311505|gb|ABY26712.1| NADH dehydrogenase subunit 4 [Crassostrea hongkongensis] Length = 450 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 145/419 (34%), Positives = 218/419 (52%), Gaps = 23/419 (5%) Query: 51 VWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN 110 +WS F + + + FC VD S L+ LT ++ IL S S N Sbjct: 33 IWSAFSLTYWGGSGVSWESLSELFC-----VDIYSSSLISLTLWVCGISILVS--SAMLN 85 Query: 111 FREYMIAFLVLES----MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAY 165 R F VL + M++ F+ + +FY+ FE++L+PM IIG+WGG ER+ + Sbjct: 86 LRGVFNVFWVLVTLLCFMLVQCFMVNTLAMFYVLFESTLVPMISIIGIWGGQFERVPSIQ 145 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM-WIAFFCSFAIKIP 224 YT GS +L M E S + K F+ W+ W+A F F IK+P Sbjct: 146 YIAAYTVGGSFPLLLIFTSM--EVHAGSSFMWFISVKTNFN---WLFWLACFLGFLIKLP 200 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 FPFHTWLP AHVQAP GSV LAGI+LK+GGYG R ++ LF + F + LSL Sbjct: 201 AFPFHTWLPKAHVQAPVGGSVILAGILLKLGGYGITRVMM-LFSYTLESFGIFVIALSLY 259 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +Y +++ + Q+D+KKLIA+SS++HM + IG+FS + G+ GA ++SHG +SS LF Sbjct: 260 GSVYGAVMCIRQSDVKKLIAFSSVSHMAFPVIGLFSCTEVGLVGAYIMLVSHGFISSGLF 319 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 G+ + +H+R I A V +P +V MAN+G+P I E L ++S Sbjct: 320 VLCGISSELVHSRKIKAMNESVRAIPSLGFFWLVMIMANLGVPPCPVIISEVLSVVSAVA 379 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC----MVYPIA 459 + + + +VLS YS LY ++ SK + ++ L++ ++YP+A Sbjct: 380 LWPWIFIPLALYLVLSGAYSFSLYCQLTSSKSKNKTEVLFGEVMLKDMKALYFLLYPLA 438 >gi|145567269|gb|ABP82036.1| NADH dehydrogenase subunit 4 [Microcebus rufus] gi|145567279|gb|ABP82044.1| NADH dehydrogenase subunit 4 [Microcebus rufus] gi|145567284|gb|ABP82048.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 196/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLISLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILSPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|88061945|gb|ABD38951.1| NADH dehydrogenase subunit 4 [Menticirrhus americanus] Length = 460 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 197/363 (54%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S ++ D +S L+VLT +L P +L+S R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLVLTCWLLPLMLLASQNHTALEPINRQRTYITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L + + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQFSNPAQLLTLADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRVLPMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMTAWWFLGSLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|254674889|dbj|BAH86414.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] Length = 452 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 215/383 (56%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ + + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLIYQRVFVGCQVFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 GSLALDLSYEGVFQLSYLVNFW-WVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGATAMLSSEVFLALALWGIVVMGGICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLSGSRGLIMI 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ + ++ NM LP GE + +++++ S+ V S G VL+A YSL+L+ Sbjct: 349 FPLISLGWFLMSLMNMALPPAINLFGELVAMVALYNWSSYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +G + + + L ++ RE Sbjct: 409 GMSQWG-NTMKNYKNLYIITSRE 430 >gi|190349408|ref|YP_001974627.1| NADH dehydrogenase subunit 4 [Oplegnathus fasciatus] gi|111083105|gb|ABH05095.1| NADH dehydrogenase subunit 4 [Oplegnathus fasciatus] Length = 460 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 200/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQLFLIMAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYIMFETTLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNTTG 173 Query: 191 TSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTIQYSNPLLLTTYADKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMTMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTLVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMGELMIISSLFNWSWWTLLLTGAGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|2290476|gb|AAD04673.1| NADH dehydrogenase subunit 4 [Pygathrix nemaeus] Length = 459 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 135/399 (33%), Positives = 216/399 (54%), Gaps = 13/399 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S +L D ++ L++LT +L P I++S + R+ Y+ + L+ +I F++ Sbjct: 53 STYLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPLRKKLYLSMMIFLQISLIMTFMA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L ++ + Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLAGSLPLLIMLIYTHNKLG 172 Query: 191 TSSIIDLYAMS-KFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + +I L M+ K S + + W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 173 SLNIPLLTLMAQKLTTSWSHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R L PL +++ A LSL +I S + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRLTPILNPL-TEHMAYPFLMLSLWGMIMTSSTCLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + GA+ M++HGL SS LF YDR H+R + GL Sbjct: 292 SHMALVIMASLIQTPWSFTGAIILMIAHGLTSSMLFCLANSNYDRTHSRIMLLSRGLQSL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A V + N+ LP + IGE LV+ S F S+ +L ++++ALYSL ++ Sbjct: 352 LPLMAFWWFVANLTNLALPPSINLIGELLVVTSSFSWSHITMILTGLNMLITALYSLHMF 411 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 G + + +K RE +++ PI +LT+ Sbjct: 412 ITTQRG-TLTSHIINMKPSFTRENMLMFMHMSPIILLTL 449 >gi|88061928|gb|ABD38940.1| NADH dehydrogenase subunit 4 [Larimus fasciatus] Length = 460 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 198/363 (54%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP +I WG +ER+ A F Y+ GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYSLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQFSNPAQLITFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R + L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRIIPMLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLAATWWFFASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|145567072|gb|ABP81879.1| NADH dehydrogenase subunit 4 [Microcebus ravelobensis] Length = 459 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/383 (32%), Positives = 204/383 (53%), Gaps = 13/383 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I+ S + + R+ Y+ L++ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMGSQHHLTKEPLMRKKLYLSMLTFLQTFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSMGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMPNLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYMLTMTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCMV 455 G + +K RE ++ Sbjct: 416 RG-KFTHHIYNIKPSYTRENTLM 437 >gi|5835745|ref|NP_008558.1|ND4_15054 NADH dehydrogenase subunit 4 [Chrysemys picta] gi|4530196|gb|AAD21933.1| NADH dehydrogenase subunit IV [Chrysemys picta] Length = 460 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 201/374 (53%), Gaps = 20/374 (5%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKS-IQENF---REYMIAFLVLESMVIGAF 129 F +Y+ +D IS L+ L+ +LTP IL+S I E R ++ +L+ ++ AF Sbjct: 52 FSNYYTSIDYISAPLLTLSCWLTPLMILASQNHLIMEPISRKRTFIFITTLLQISLVLAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++F+I FE +LIP II WG ER+ A F YT GS+ +L A++ + + Sbjct: 112 SATELIMFFIMFETTLIPTLAIITRWGNQMERLNAGTYFLFYTLIGSLPLLIALLSL--Q 169 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + ++ P + W W A +F IK+P++ H WLP AHV+AP AGS Sbjct: 170 NQIGTLSTYMIQLNQPTMLNTWAHTTWWFALLTAFMIKMPLYGLHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG IR + L PL+ P + L+L +I + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGIIRIMPTLNPLSKTLSYPFMV-LALWGVIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V + + GA+ M++HGL SS LF Y+R H+R + Sbjct: 289 YSSVSHMGLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL---- 344 Query: 365 LVHNM----PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 L NM P + ++ ++ANM +P T +GE +I S+F SN + G +++ Sbjct: 345 LARNMQLLYPLMGLWWLLTSLANMAIPPTINLMGELTIIASLFNWSNITILATGLGTIIT 404 Query: 421 ALYSLWLYRKVVFG 434 A Y+L++ +G Sbjct: 405 ATYTLYMLSTTQWG 418 >gi|108742906|gb|ABG02069.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 131/396 (33%), Positives = 211/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSK-FPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + +S+ P W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MIMLSQNLP---NLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP +GE VIM+ F SN ++ V+++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPFINLVGELFVIMTSFSWSNLTIIMTGLNVLITALYSLYMLTMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + +K RE + + P+ +LT+ Sbjct: 415 QRG-KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|93140470|sp|Q2I3F2|NU4M_LOXAF RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|83415414|gb|ABC17913.1| NADH dehydrogenase subunit 4 [Loxodonta africana] Length = 459 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/388 (32%), Positives = 205/388 (52%), Gaps = 21/388 (5%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++LT +L P +++S + + Y+ ++L+ +I F + D++L Sbjct: 58 LDSLSTPLLILTIWLLPLMLIASQSHLSSGSTFQKKSYITTIILLQVSLIMTFAATDLIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FE +LIP VII WG ER+ A F YT GS+ +L ++++ + T + Sbjct: 118 LYIMFETTLIPTMVIITRWGNQLERLNAGSYFLFYTLMGSLPLLVTLMLI---QNTLGSL 174 Query: 196 DLYAMSKFPFSIQ----YW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 +L + P+ I+ W +W+ +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 175 NLMML---PYLIKPIDNLWSTNMLWLTCTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R + L PL + + P + LSL ++ +S + + QTD+K LIAYSS Sbjct: 232 AAILLKLGGYGMLRITILLDPLTTHMYYPFLM-LSLWGMVMSSSICLRQTDMKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V I I GA+ M++HGL SS LF Y+R+H R + GL Sbjct: 291 VSHMALVIIAIMLQTPWSFMGALTLMIAHGLTSSMLFCLANSNYERIHNRTMILARGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ NM P T IGE L+I + F SN V+++ +Y+L + Sbjct: 351 LLPLMATWWLLASLINMAPPPTINLIGELLIITTSFSWSNFTIFPMGLNVLITTMYTLHM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + +K RE ++ Sbjct: 411 MTTTQRG-KTSHHAKSIKPSFTRENTLM 437 >gi|145567239|gb|ABP82012.1| NADH dehydrogenase subunit 4 [Microcebus jollyae] Length = 459 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 197/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 195 --IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LLMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE LV+M+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELLVMMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|32402549|ref|NP_861498.1| NADH dehydrogenase subunit 4 [Chrysochloris asiatica] gi|32188004|dbj|BAC78421.1| NADH dehydrogenase subunit 4 [Chrysochloris asiatica] Length = 459 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 128/387 (33%), Positives = 210/387 (54%), Gaps = 13/387 (3%) Query: 88 LVVLTTFLTPFCILSSW--KSIQENFRE--YMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 L++LTT+L P +++S + + R+ Y+ + L+ +I F + ++++FYI FEA Sbjct: 65 LLILTTWLLPLMLMASQFHLNTESELRKKTYISMLITLQIFLIMTFTASELIMFYILFEA 124 Query: 144 SLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI--IDLYAM 200 +LIP ++I WG +ER+ A F YT GS+ +L A+ + + +I I Sbjct: 125 TLIPTLILITRWGNQTERLNAGLYFLFYTLAGSLPLLVALTYLQNNLGSLNILLIQFITQ 184 Query: 201 SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCI 260 P ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG + Sbjct: 185 PMSPSISSNFLWLACMLAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMM 244 Query: 261 RFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS 320 R + + PL P + LSL ++ SL+ + QTD+K LIAYSS++HM V + I Sbjct: 245 RITILIDPLNYSMAFPFLM-LSLWGMVMTSLICLRQTDLKSLIAYSSVSHMALVIVAILI 303 Query: 321 GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFT 380 G GA M++HGL SS LF Y+R+H+R + GL +P A+ + Sbjct: 304 QTPWGFMGATTLMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQSIIPLMALWWFTAS 363 Query: 381 MANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK 440 + N+ LP + FIGE + +S+F S +L ++++ALYSL++ G Sbjct: 364 LMNLALPPSINFIGELFITLSMFSWSKLSLLLMGLNMLITALYSLYMLITTQRG-KPSFH 422 Query: 441 VQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +L+V Sbjct: 423 INSIKPTFTREHTLMTLHILPLILLSV 449 >gi|53686499|ref|YP_097177.1| NADH dehydrogenase subunit 4 [Aneides hardii] gi|51979950|gb|AAU20614.1| NADH dehydrogenase subunit 4 [Aneides hardii] Length = 458 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 134/388 (34%), Positives = 207/388 (53%), Gaps = 16/388 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL----VLESMVIGAFLSLD 133 +LG+D IS L++LT +L P IL+S +++N + +L L+ +I AF S + Sbjct: 55 YLGLDQISSPLLILTCWLLPLMILASQNHLKKNSTSHQKMYLSMLSTLQMALILAFSSTE 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 + LFY+ FE +LIP +II WG +ER+ A F YT GS+ +L A++ + T Sbjct: 115 LTLFYVAFETTLIPTLIIITRWGNQTERLNAGMYFLFYTLAGSLPLLVALLFL---STTI 171 Query: 193 SIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + L + +P + +W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLSLEFLMFYPKMFMMTTTNKILWFGCLMAFMVKMPLYGAHLWLPKAHVEAPVAGSMIL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG IR L L + +I L+L ++ SL+ + QTD+K LIAYSS Sbjct: 232 AAILLKLGGYGIIRVTLMFTSLIELSYPFII--LALWGVLMTSLICIRQTDLKSLIAYSS 289 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 I+HMG V GA M+SHGL+SSALF Y+R H+R + GL Sbjct: 290 ISHMGLVVAAALIQTPWSFTGATILMISHGLISSALFCLANTNYERTHSRTMLLARGLQT 349 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ + NM LP T GE ++++S+F S ++ G +L+A Y+L++ Sbjct: 350 TLPLMASWWLLSNLFNMALPPTPNLWGELIIMVSLFNWSPWTILITGLGTLLTAAYTLYM 409 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G L + RE C++ Sbjct: 410 FLMTQRGHLPKHLKYALPTFT-REHCLM 436 >gi|15806505|ref|NP_295216.1| NADH dehydrogenase I subunit M [Deinococcus radiodurans R1] gi|6459250|gb|AAF11056.1|AE001993_6 NADH dehydrogenase I, M subunit [Deinococcus radiodurans R1] Length = 474 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 128/432 (29%), Positives = 237/432 (54%), Gaps = 17/432 (3%) Query: 48 SLFVWSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKS 106 L++W + +G S W+ +Y + ++G+ + ++T F+T +++ W + Sbjct: 39 GLWLWRLGGEGLSVLP------WVPPLGVTYAVELNGVGLAFALVTAFMT---LMAVWYA 89 Query: 107 IQE--NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAA 164 + N + L +E+ ++G F + D++LFY+FFE +LIP +++ V+GG R+ A Sbjct: 90 ARRVPNPGPMLAMVLAMETGLLGIFAARDLILFYVFFEWALIPSLLMLAVYGGPHRMRAL 149 Query: 165 YKFFLYTFFGSIFMLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIK 222 KF YT GS+FML + + W T ++ DL A + Q W+++ F + A+K Sbjct: 150 VKFAAYTLLGSLFMLLSFIGYKWLGGSPTFALPDLLAHPVGGVA-QTWLYLGFLAAMAVK 208 Query: 223 IPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLS 282 +P++P H WLP+ H Q +G + G + K+GGYG F L LFP AS PV+ L+ Sbjct: 209 LPLWPLHAWLPDFHEQNHESGIPDVMGTLYKVGGYGIFVFGLTLFPDASLELRPVLMALA 268 Query: 283 LIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 +YA+ ++ QT+ K+L+AY+ ++HMG+V +G+FS ++ V GAM+ + L + A Sbjct: 269 AFTALYAAWIAFGQTNWKRLLAYAGLSHMGFVALGLFSMNETAVIGAMYLLAFQNLYTGA 328 Query: 343 LFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 LF VG++ +R+ + D GG+++ + + A++ +PG +GF+GEF +++ Sbjct: 329 LFMAVGMLQERVGSLDT-RVGGVMNQAGALGGLTLALWFASIAVPGLAGFVGEFSILLGA 387 Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLT 462 +Q S + +A + +A Y+L ++K F + ++ DL E ++ + Sbjct: 388 YQVSPWLTFIAGLTTIAAAAYALTAFQK-TFWEGRPLGAVRVPDLRGTEWLVLGLPLLAA 446 Query: 463 VFFGIYPVPIRD 474 +FFG+Y P+ + Sbjct: 447 LFFGVYSAPVLN 458 >gi|254674805|dbj|BAH86336.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] Length = 452 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 215/383 (56%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ + + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLIYQRVFVGCQVFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 GSLALDLSYEGVFQVSYLVNFW-WVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGATAMLSSEVFLALALWGIVVMGGICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLSGSRGLIMI 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ + ++ NM LP GE + +++++ S+ V S G VL+A YSL+L+ Sbjct: 349 FPLISLGWFLMSLMNMALPPAINLFGELVAMVALYNWSSYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +G + + + L ++ RE Sbjct: 409 GMSQWG-NTMKNYKNLYIITSRE 430 >gi|45685687|ref|YP_003722.1| NADH dehydrogenase subunit 4 [Rhyncholestes raphanurus] gi|118200061|emb|CAD48222.2| NADH dehydrogenase subunit 4 [Rhyncholestes raphanurus] Length = 459 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 129/346 (37%), Positives = 197/346 (56%), Gaps = 10/346 (2%) Query: 88 LVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 L++L+ +L P +++S + + +R+ Y+ ++L+ +I AF S ++++FYI FE Sbjct: 65 LIILSCWLLPLMMIASQNHLSKESLYRKKMYLTMLIILQLSLIMAFSSSELVMFYILFET 124 Query: 144 SLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL---YA 199 +LIP VII WG +ER+ A F YT GS+ +L A++ + T I+ Y Sbjct: 125 TLIPTLVIITRWGNQNERLNAGLYFLFYTLVGSLPLLVALLYLHDNLGTLHILTTTLKYN 184 Query: 200 MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 S+ FS +W A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG Sbjct: 185 TSELTFS-STMLWYACMLAFMIKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGI 243 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +R + P++S F P I LS+ +I S + + QTD+K LIAYSS++HMG V I Sbjct: 244 MRITIFTEPISSYLFYPFII-LSMWGMIMTSSICLRQTDLKSLIAYSSVSHMGLVIIAAL 302 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 GA M++HGL SS LF Y+R+H+R + GL +P + Sbjct: 303 MQSTLSFMGASTLMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQMMLPLMCTWWLFA 362 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 ++AN+ LP + +GE +VI+S F SN +L V++ALYSL Sbjct: 363 SLANLALPPSINLLGELMVIVSSFSWSNFSIILLGINTVITALYSL 408 >gi|30721821|gb|AAP33784.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095639|gb|AAP43118.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095647|gb|AAP43124.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095839|gb|AAP43268.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095843|gb|AAP43271.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095847|gb|AAP43274.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095851|gb|AAP43277.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095855|gb|AAP43280.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095859|gb|AAP43283.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] Length = 456 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 204/374 (54%), Gaps = 18/374 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYANKF----MAMDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L +++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 TLTTLLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM + ++L S F + +W+A +F +K+P++ H WLP Sbjct: 162 LMALLVM---NNLTDHLNLMMFSTFKLNTTNLTNDALWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR L P Y+ P I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIRISPILQPTEKLYY-PFIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMMAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S ++ + Sbjct: 337 NSRTLITMRGLQKTSSLMTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFLMPA 396 Query: 415 FGVVLSALYSLWLY 428 G VL+A Y++ ++ Sbjct: 397 IGTVLTAAYTMHMF 410 >gi|12044381|gb|AAG47836.1|AF312391_3 NADH dehydrogenase subunit 4 [Cottus cognatus] Length = 413 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/361 (33%), Positives = 197/361 (54%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+ R Y+ L+ +I F + Sbjct: 54 NFYMATDSLSTPLLVLTCWLLPLMILAKPSHTASEPLNRQRMYLTLLTSLQVFLIHTFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ L A+++ Sbjct: 114 TEIIMFYVMFEATLIPTLILITRWGNQTERLNAGIYFLFYTLAGSLPQLVALLLFQNSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + + ++ + W W +F +K+P + H WLP A+V+AP AGS+ L Sbjct: 174 TLSLLTIQYSDPVELTSYAHKVW-WAGCLLAFLVKMPFYGVHLWLPKANVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 ++LK+GGYG +R ++ L PL + P I F +L +I + + + QTD+K LIAYSS Sbjct: 233 GAVLLKLGGYGMMRMVVMLEPLTKELSYPFIVF-ALWGVIMSGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H R + GL Sbjct: 292 VSHMGLVVGGILIQTPWGFSGALILMIAHGLASSALFCLANTSYERTHNRTMLLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 VLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIILTGAGTLITASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|155970517|gb|ABU41866.1| NADH dehydrogenase subunit 4 [Agkistrodon piscivorus] Length = 445 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/356 (33%), Positives = 188/356 (52%), Gaps = 13/356 (3%) Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYA 163 K + R ++ +L+ + F++ ++ L YI FEA+LIP +II WG +ER+ A Sbjct: 80 KEPLQRQRTFLATLTLLQLFIAMTFMASNLTLMYIMFEATLIPTLIIITRWGQQTERLTA 139 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSF 219 F LYT S+ +L AI+ + T++ + + P W +W+A +F Sbjct: 140 GTYFMLYTLTTSLPLLMAIIFL--NNSTNTPTHFLQLLQPP---NQWTSLLLWLACLTAF 194 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG IR + L + F P I Sbjct: 195 LAKMPIYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRMMQILPTTKTDMFLPFIV 254 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 L+L I A+L + QTD+K LIAYSSI+HMG V I G+ GAM M++HG Sbjct: 255 -LALWGAILANLTCLQQTDLKSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFT 313 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 SSALF Y+R HTR + GL + +P ++ + N+ +P T F GE L++ Sbjct: 314 SSALFCLANTTYERTHTRILILTRGLHNILPMATTWWLLTNLMNIAIPPTMNFTGELLIM 373 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++F T ++ ++++A YSL ++ G + Q + RE ++ Sbjct: 374 SALFNWCPTTIIMLGLSMLITASYSLHMFLSTQMGPTPLNN--QTEPTHSREHLLM 427 >gi|31095903|gb|AAP43316.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] Length = 456 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 204/374 (54%), Gaps = 18/374 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYANKF----MAMDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L +++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 TLTTLLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM + ++L S F + +W+A +F +K+P++ H WLP Sbjct: 162 LMALLVM---NNLTDHLNLMMFSTFKLNTTSLTNDALWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR L P Y+ P I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIRISPILQPTEKLYY-PFIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMMAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S ++ + Sbjct: 337 NSRTLITMRGLQKTSSLMTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFLMPA 396 Query: 415 FGVVLSALYSLWLY 428 G VL+A Y++ ++ Sbjct: 397 IGTVLTAAYTMHMF 410 >gi|145567259|gb|ABP82028.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 196/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQRHLTKESLMRKKLYLSMLTSLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSGNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILSPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|177543314|gb|ACB73045.1| NADH dehydrogenase subunit 4 [Colobus polykomos] Length = 459 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 141/447 (31%), Positives = 232/447 (51%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHGLIISLIPLLFFNQASSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FE +LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKIYLSMMIFLQISLIMTFMATELILFYILFETTLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYIYNGLGSLNIMFLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 ++Y A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A V + N+ LP T Sbjct: 314 ILMIAHGLTSSMLFCLANSNYERTHSRIMMLSRGLQTLLPLMAFWWFVANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G + +K R Sbjct: 374 NLMGELLVMMTSFSWSHITIMLTGLNMLITALYSLYMYITTQRG-PLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E ++ PI +L+ + G+ P Sbjct: 433 ENMLMLMHLSPIILLSLNPNIIMGLTP 459 >gi|212725462|ref|YP_002317216.1| NADH dehydrogenase subunit 4 [Aulichthys japonicus] gi|212374519|dbj|BAG83088.1| NADH dehydrogenase subunit 4 [Aulichthys japonicus] Length = 460 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 200/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S+++ D +S L+VLT +L P +++S R Y+ L+ +I AF + Sbjct: 54 SFYMATDSLSTPLLVLTCWLLPLMVIASQNHTTGEPLNRQRVYISLLTSLQLFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQNSAG 173 Query: 191 TSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + F F+ + W W + +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLVIQYSDPFHLTTFADKLW-WASCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R +L L PL + P I F +L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMLMLDPLTKEMGYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V I GA+ M++HGL SSALF Y+R H+R + G Sbjct: 292 VSHMGLVVAAILIQTPWSFSGALILMIAHGLASSALFCLANTNYERTHSRTLLLGRGFQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+GLP +GE ++I S+F S L G +++ YSL++ Sbjct: 352 ALPLMTTWWFIASLANLGLPPLPNLMGELMIITSLFGWSWWTLALTGAGTLITVSYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|83779435|gb|ABC47512.1| NADH dehydrogenase subunit 4 [Artibeus glaucus rosenbergii] Length = 459 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 121/372 (32%), Positives = 200/372 (53%), Gaps = 35/372 (9%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KSYITMLILLQVFLIMTFTATELIMFYILFEATLLPTLIIITRWGNQAERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW------------MWIAFFCS 218 T GS+ +L A+ + + + ++ M QYW +W+A + Sbjct: 153 TLVGSLPLLIAL---TYFQNLTGTLNFLLM-------QYWTTPLPTSWNTTLLWLACMMA 202 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 F +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG +R + L PL + + A Sbjct: 203 FMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMLRITILLEPL-TNFMAYPF 261 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL +I S + + QTD+K LIAYSS++HM V + GA M++HGL Sbjct: 262 MMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIAAVLIQTPWSFMGATALMIAHGL 321 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 SS LF Y+R+H+R + GL +P A ++ ++ N+ LP T IGE + Sbjct: 322 TSSMLFCLANSNYERVHSRTMILARGLQMLLPLMAAWWLLASLTNLALPPTINLIGELFI 381 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS---LRERCM- 454 +MS+F SN L ++L+ALYSL++ + + + Q + +++ RE + Sbjct: 382 VMSMFSWSNLSIALLGLNIILTALYSLYM----LIMTQRGKHTQHINNIAPSYTRENTLM 437 Query: 455 ---VYPIAVLTV 463 + P+ +L++ Sbjct: 438 TMHITPLLLLSI 449 >gi|56548785|ref|YP_161269.1| NADH dehydrogenase subunit 4 [Phascogale tapoatafa] gi|56398514|emb|CAG26390.1| NADH dehydrogenase subunit 4 [Phascogale tapoatafa] Length = 459 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 131/370 (35%), Positives = 199/370 (53%), Gaps = 16/370 (4%) Query: 68 YHWIDYFCSYHLG--VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVL 121 YH D +Y+ +D +S L+VL+ +L P I++S + + Y+ ++L Sbjct: 43 YHHSDLGTNYNTSFSLDPLSSPLLVLSCWLLPLMIMASQNHLSHEPLLRKKTYLTMLIIL 102 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLF 180 + +I AF S ++++FYI FE +LIP +II WG +ER+ A F YT GS+ +L Sbjct: 103 QLSLIMAFASSELIMFYILFETTLIPTLIIITRWGSQNERLNAGLYFLFYTLVGSLPLLV 162 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM-----WIAFFCSFAIKIPMFPFHTWLPNA 235 A++ + + + MS ++ M W A +F +K+P++ H WLP A Sbjct: 163 ALLHL---HNNLGSLHMLTMSLISPTLDTSMSASLLWYACMMAFMVKMPLYGLHLWLPKA 219 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP AGS+ LA I+LK+GGYG +R P S P + LSL +I S V + Sbjct: 220 HVEAPIAGSMVLAAILLKLGGYGIMRITAFTEPATSTLCYPFMI-LSLWGMIMTSSVCLR 278 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTD+K LIAYSS++HMG V + G GA M++HGL SS LF Y+R+H Sbjct: 279 QTDLKSLIAYSSVSHMGLVIVAALMQSPLGFMGATVLMIAHGLTSSMLFCLANTNYERIH 338 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 +R + GL +P ++ ++AN+ P T +GE +VIM+ F SN +L Sbjct: 339 SRTLLLTRGLQMILPLMCAWWLLASLANLAQPPTINLLGELMVIMTTFSWSNFSLILLGI 398 Query: 416 GVVLSALYSL 425 V++ALYSL Sbjct: 399 NTVITALYSL 408 >gi|74487333|ref|YP_313677.1| NADH dehydrogenase subunit 4 [Ovophis okinavensis] gi|73760182|dbj|BAE19984.1| NADH dehydrogenase subunit 4 [Ovophis okinavensis] Length = 445 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 197/363 (54%), Gaps = 11/363 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKS-IQENF---REYMIAFLVLESMVIGAFLSLDM 134 L +D IS L+ L+ +L P ++S + I+E R ++ +L+ + F++ ++ Sbjct: 50 LSLDTISAPLLSLSYWLLPLTTIASQHTMIKEPLQRQRTFLATLTLLQLFISMTFMASNL 109 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L YI FEA+LIP +II WG +ER+ A F LYT S+ +L AI+ + T + Sbjct: 110 TLMYIMFEATLIPTLIIITRWGQQTERLTAGTYFMLYTLATSLPLLMAIIFINNSTGTPT 169 Query: 194 --IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + LY +++ +W+A +F K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 170 PFLQLLYPHNQW---TNLLLWLACLTAFLAKMPIYGLHLWLPKAHVEAPIAGSMVLAAIL 226 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR + L + F P I L+L I A+L + QTD+K LIAYSSI+HM Sbjct: 227 LKLGGYGIIRMMQILPTTKTDLFLPFIV-LALWGAILANLTCLQQTDLKSLIAYSSISHM 285 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V I G+ GAM M++HG SSALF Y+R HTR + GL + +P Sbjct: 286 GLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGLHNILPM 345 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ P T F E L++ ++F T ++ ++++A YSL ++ Sbjct: 346 ATTWWLLTNLMNIATPPTMNFTSELLIMSALFNWCPTTIIMLGLSMLITASYSLHMFLST 405 Query: 432 VFG 434 G Sbjct: 406 QMG 408 >gi|295837071|ref|ZP_06824004.1| LOW QUALITY PROTEIN: NADH dehydrogenase I, M subunit [Streptomyces sp. SPB74] gi|295826346|gb|EDY44111.2| LOW QUALITY PROTEIN: NADH dehydrogenase I, M subunit [Streptomyces sp. SPB74] Length = 546 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 144/370 (38%), Positives = 211/370 (57%), Gaps = 17/370 (4%) Query: 55 FDKGRSS-FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQEN 110 FD+ ++ Q WI Y +HLGVDGIS+ L+VLT LT C L S+ + Sbjct: 32 FDRDHAARIQASTDVSWIAAYDIRFHLGVDGISLPLLVLTALLTFLCALHSYFRPPRGGS 91 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 R ++ L+LE + AF LD++LF++ FE LIPM+ +I WGG++R AA+KF L+ Sbjct: 92 PRAFVALLLLLEGGALAAFAVLDLVLFFVAFETVLIPMYFLIARWGGAKREQAAWKFILF 151 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS ML +++ + T ++ L S S+Q +A A+K PM+P Sbjct: 152 TLVGSAVMLLGLLLTGVKAGTFDMVALATDNGSGLSTSVQVTAVLAIGLGLAVKTPMWPL 211 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H+WLP AH APTAGSV LAG++LKMG YG +R ++P+ P + FAP + L+ I++ Sbjct: 212 HSWLPAAHTAAPTAGSVLLAGVLLKMGTYGFVRVVIPVAPEGMKVFAPWLAVLAAAGILW 271 Query: 289 ASLVSM------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 SL + D+K+L+AYSS+ HMG+V +GI S G+ GA+F ++HGL++ Sbjct: 272 GSLACLQLVRRGAGGDLKRLVAYSSVGHMGFVLLGIASMTPQGLNGALFANIAHGLITGL 331 Query: 343 LFFCVGVIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 LFF VG + DR T I G L PRYA ++ +A++GLPG +GF GE L Sbjct: 332 LFFLVGGVKDRAGTSVIDRLAGSAGAALYGRAPRYAALLAFAAVASLGLPGLAGFWGEML 391 Query: 398 VIMSVFQNSN 407 + F ++ Sbjct: 392 TMYGAFDPAS 401 >gi|14587612|gb|AAK70598.1|AF224636_4 NADH dehydrogenase subunit 4 [Microcebus rufus] gi|108742967|gb|ABG02118.1| NADH dehydrogenase subunit 4 [Microcebus mamiratra] gi|108742972|gb|ABG02122.1| NADH dehydrogenase subunit 4 [Microcebus mamiratra] gi|108742977|gb|ABG02126.1| NADH dehydrogenase subunit 4 [Microcebus mamiratra] Length = 459 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 197/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + +K S Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QKSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMSGLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ F ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNFTIIITGFNMLITALYSLYM 410 >gi|145567176|gb|ABP81962.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] Length = 459 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 126/364 (34%), Positives = 193/364 (53%), Gaps = 30/364 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKEPLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAI-------------V 183 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ V Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQNSLGSLNYLV 178 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + W + TSS+ +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 179 MNMWSQDTSSLWS-----------SNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L P P I L L +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP IGE VIM F SN ++ ++++ALY Sbjct: 347 GLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMGSFSWSNLTIIMTGLNMLITALY 406 Query: 424 SLWL 427 SL++ Sbjct: 407 SLYM 410 >gi|157738541|ref|YP_001491340.1| NADH dehydrogenase subunit 4 [Macrorhamphosodes uradoi] gi|139000693|dbj|BAF51864.1| NADH dehydrogenase subunit 4 [Macrorhamphosodes uradoi] Length = 460 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 202/365 (55%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLVLTCWLLPLMILASQNHTAHEPINRQRMYISLMTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 GATEIIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T ++ L P S+ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NTTGTLSLLTLQYSNPMSLASYADKLW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L L PL + P I F +L II + + QTD+K LI Sbjct: 229 SMILAAVLLKLGGYGMMRMLAMLEPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + ++AN+ LP +GE +VI+S+F S L G +++A Y Sbjct: 348 GLQMALPLMTTWWFIASLANLALPPLPNLMGELMVIVSLFNWSWWTLALTGAGTLITAGY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|28881951|ref|NP_795751.1| NADH dehydrogenase subunit 4 [Dallia pectoralis] gi|28804866|dbj|BAC58156.1| NADH dehydrogenase subunit 4 [Dallia pectoralis] Length = 460 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 200/364 (54%), Gaps = 8/364 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ +D +S L++LT +L P I++S K I R Y+ + L+ +I AF + + Sbjct: 56 YIALDPLSAPLLILTCWLLPLMIIASQKHIVPEPLTRQRTYISLLISLQVFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +L+FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T Sbjct: 116 ILMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLFLYKDTGTL 175 Query: 193 SIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 S+ L + Q W A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 176 SMFTLQYTKTLNLTSCGQKLWWAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L P + P I L+L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMVVILGPPTKEMAYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I GA+ M++HGL SSALF Y+R H+R + GL P Sbjct: 295 MGLVASAILIQTPWSFTGAIVLMIAHGLASSALFCLANTGYERTHSRTMLLTRGLQMIFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A + +AN+ LP +GE ++I+S+F S +L G +++A YSL+L+ Sbjct: 355 LMATWWFMANLANLALPPLPNLMGELMIIVSLFNWSYWTILLTGLGTLITASYSLYLFLA 414 Query: 431 VVFG 434 G Sbjct: 415 TQRG 418 >gi|47587956|gb|AAT35888.1| NADH dehydrogenase subunit 4 [Propithecus edwardsi] Length = 459 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 123/359 (34%), Positives = 200/359 (55%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S +++ + Y+ + L+ ++ F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQYHLKKEPWLRKKSYLSMLISLQVFLVMTFTANELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIHL---QNTMGSLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L M+ + P S W +W A +F +K+P++ FH WLP AHV+AP AGS+ LA Sbjct: 176 LLTMNFWLKELPNS---WSSNLLWTACIMAFMVKMPLYGFHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + + QTD+K L AYSS+ Sbjct: 233 AVLLKLGGYGMMRITIILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLFAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE V+++ F SN +L ++++ALYSL++ Sbjct: 352 LPLMATWWLLASLTNLALPPSINLIGELFVMVATFSWSNISIILMGLNMLITALYSLYM 410 >gi|5835076|ref|NP_008157.1|ND4_10512 NADH dehydrogenase subunit 4 [Petromyzon marinus] gi|3122530|sp|Q35542|NU4M_PETMA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|515495|gb|AAB08747.1| NADH dehydrogenase subunit 4 [Petromyzon marinus] Length = 458 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 135/357 (37%), Positives = 202/357 (56%), Gaps = 12/357 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESMVIG-AFLSLDM 134 L +D S L++L+ +L P I+ S ++ ++ MI+ L+L +++ F + ++ Sbjct: 57 LSIDQFSCPLIMLSCWLLPLTIMGSQAHMKTEPITRQKTMISLLILLQVLLCITFGASNL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FYI FE +LIP +II WG ER+ A F YT S+ +L A++++ + S Sbjct: 117 LMFYIAFETTLIPTLLIITRWGNQKERLTAGLYFLFYTLSASLPLLLALIMIQTHLNSLS 176 Query: 194 I-----IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 I +L + P+S W WIA F +F IK+P++ FH WLP AHV+AP AGS+ LA Sbjct: 177 IYIIPLSNLTLLLNTPWSETLW-WIACFLAFLIKMPLYIFHLWLPKAHVEAPIAGSMILA 235 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG IR PL P + +++ +I S + + QTD+K +IAYSS+ Sbjct: 236 AILLKLGGYGMIRMSSLFIPLTKDLAVPFMI-IAMWGMIVTSSICLRQTDLKSMIAYSSV 294 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GIF+ GA+ M++HGLVSS L + Y+R HTR IF GL Sbjct: 295 SHMGLVVAGIFTMTPWAWSGALAMMIAHGLVSSGLLCLANITYERTHTRSIFMNRGLKTL 354 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P + ++ T ANM LP F+ E L+I S+F SN +L + L+AL+SL Sbjct: 355 FPLMSFWWLMMTFANMALPPFPNFMAEILIITSLFNWSNWTILLLGLSMTLTALFSL 411 >gi|31095651|gb|AAP43127.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095831|gb|AAP43262.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095863|gb|AAP43286.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095867|gb|AAP43289.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095871|gb|AAP43292.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095875|gb|AAP43295.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095879|gb|AAP43298.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095883|gb|AAP43301.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095887|gb|AAP43304.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095891|gb|AAP43307.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095895|gb|AAP43310.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095899|gb|AAP43313.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095907|gb|AAP43319.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095911|gb|AAP43322.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095915|gb|AAP43325.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095919|gb|AAP43328.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095923|gb|AAP43331.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095927|gb|AAP43334.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095931|gb|AAP43337.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095935|gb|AAP43340.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095939|gb|AAP43343.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095943|gb|AAP43346.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095947|gb|AAP43349.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095951|gb|AAP43352.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095955|gb|AAP43355.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095959|gb|AAP43358.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095971|gb|AAP43367.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095975|gb|AAP43370.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095979|gb|AAP43373.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095983|gb|AAP43376.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095987|gb|AAP43379.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095991|gb|AAP43382.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095995|gb|AAP43385.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095999|gb|AAP43388.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31096003|gb|AAP43391.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31096007|gb|AAP43394.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] Length = 456 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 205/374 (54%), Gaps = 18/374 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYANKF----MAMDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L +++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 TLTTLLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM + ++L S F + +W+A +F +K+P++ H WLP Sbjct: 162 LMALLVM---NNLTDHLNLMMFSTFKLNTTSLTNDALWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR + P+ + + P I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIR-ISPILQPTEKLYYPFIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMMAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S ++ + Sbjct: 337 NSRTLITMRGLQKTSSLMTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFLMPA 396 Query: 415 FGVVLSALYSLWLY 428 G VL+A Y++ ++ Sbjct: 397 IGTVLTAAYTMHMF 410 >gi|145567234|gb|ABP82008.1| NADH dehydrogenase subunit 4 [Microcebus jollyae] Length = 459 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 197/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 195 --IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LLMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE V+M+ F SN ++ S ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVMMASFSWSNLTIIMTSLNMLITALYSLYM 410 >gi|31095643|gb|AAP43121.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] Length = 456 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 205/374 (54%), Gaps = 18/374 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYANKF----MAMDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L +++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 TLTTLLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM + ++L S F + +W+A +F +K+P++ H WLP Sbjct: 162 LMALLVM---NNLTDHLNLMMFSTFKLNTTSLTNDALWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR + P+ + + P I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIR-ISPILQPTEKLYYPFIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMMAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S ++ + Sbjct: 337 NSRTLITMRGLQKTSSLMTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFLMPA 396 Query: 415 FGVVLSALYSLWLY 428 G VL+A Y++ ++ Sbjct: 397 IGTVLTAAYTMHMF 410 >gi|332886814|dbj|BAK22935.1| NADH dehydrogenase subunit 4 [Rasbora daniconius] Length = 460 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 137/407 (33%), Positives = 210/407 (51%), Gaps = 19/407 (4%) Query: 70 WIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMV 125 W D +++L D +S + LT +L P IL+S I R Y+ L+ + Sbjct: 50 WTD--SNHYLATDPLSTPFLTLTCWLLPLMILASQNHINPEPANRQRMYISLLTSLQMFL 107 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVV 184 I AF + ++++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+++ Sbjct: 108 IMAFGATEIIMFYIMFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLAGSLPLLIALLL 167 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + T S++ + P ++ W W +F +K+P++ H WLP AHV+AP Sbjct: 168 LQHSAGTLSMLIMQYTQ--PLALNSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAP 225 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300 AGS+ LA I+LK+GGYG +R ++ L + P I L+L II + + QTD+K Sbjct: 226 VAGSMVLAAILLKLGGYGMMRMMVVLDAFNKELAYPFII-LALWGIIMTGSICLRQTDLK 284 Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360 LIAYSS++HMG V GI G GA+ M++HGL SS LF Y+R+H+R + Sbjct: 285 SLIAYSSVSHMGLVAGGILIQTTWGFSGAIALMIAHGLTSSMLFCLANTTYERVHSRTMI 344 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GL P A + +AN+ LP +GE +I ++F S L G +++ Sbjct: 345 LIRGLQMVFPLAATWWFIANLANLALPPLPNLVGELTIITTLFSWSPWTIALTGVGTLIT 404 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 A YSL+++ G + L RE + + PI +L V Sbjct: 405 ASYSLYMFLMTQRG-QMPSHITNLPPYHTREHLLMALHLIPIILLVV 450 >gi|31095719|gb|AAP43178.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095723|gb|AAP43181.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095815|gb|AAP43250.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095819|gb|AAP43253.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095823|gb|AAP43256.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095827|gb|AAP43259.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] Length = 456 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 204/374 (54%), Gaps = 18/374 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYANKF----MAMDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L +++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 TLTTLLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM + ++L S F + +W+A +F +K+P++ H WLP Sbjct: 162 LMALLVM---NNLTDHLNLMMFSTFKLNTTSLTNDALWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR L P Y+ P I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIRISPILQPTEKLYY-PFIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMMAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S ++ + Sbjct: 337 NSRTLITMRGLQKTSSLMTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFLMPA 396 Query: 415 FGVVLSALYSLWLY 428 G VL+A Y++ ++ Sbjct: 397 IGTVLTAAYTMHMF 410 >gi|5881416|ref|NP_007764.1|ND4_15058 NADH dehydrogenase subunit 4 [Branchiostoma floridae] gi|8473840|sp|O47423|NU4M_BRAFL RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|2655372|gb|AAB87992.1| NADH subunit 4 [Branchiostoma floridae] Length = 452 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 213/383 (55%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ + + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLIYQRVFVGCQVFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 GSLALDLSYEGVFQLSYLVNFW-WVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGATAMLSSEVFLALALWGIVVMGGICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLSGSRGLIMI 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + + ++ NM LP GE + +++++ S V S G VL+A YSL+L+ Sbjct: 349 FPLISSGWFLMSLMNMALPPAINLFGELVAMVALYNWSPYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +G + + + L ++ RE Sbjct: 409 GMSQWG-NTMKNYKNLYTITSRE 430 >gi|83779427|gb|ABC47506.1| NADH dehydrogenase subunit 4 [Rhinophylla pumilio] Length = 459 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 122/369 (33%), Positives = 197/369 (53%), Gaps = 29/369 (7%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L++ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYISMLVLLQTFLIMTFTATELIMFYILFEATLLPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW------------MWIAFFCS 218 T GS+ +L A+ + + T ++ L IQYW +W+A + Sbjct: 153 TLIGSLPLLVALTYL--QNSTGTLNFLL--------IQYWSSPTTNSWSNSLLWLACMLA 202 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L P +++ A Sbjct: 203 FMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLNP-TTEHMAYPF 261 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL +I S + + QTD+K LIAYSS++HM V I GA M++HGL Sbjct: 262 MILSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFMGATALMIAHGL 321 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 SS LF Y+R H+R + GL +P A ++ ++ N+ LP T IGE V Sbjct: 322 TSSLLFCLANSNYERTHSRTMILARGLQMFLPLMATWWLLASLTNLALPPTINLIGELFV 381 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM---- 454 M++F SN L ++L+ALYSL++ G + + + RE + Sbjct: 382 TMAMFSWSNLSISLLGLNIILTALYSLYMLITTQRG-KQTHHINNMLPSYTRENTLMTLH 440 Query: 455 VYPIAVLTV 463 ++P+ +L++ Sbjct: 441 IFPLLLLSI 449 >gi|145567161|gb|ABP81950.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 195/355 (54%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLVRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMTSFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|317176603|dbj|BAJ54411.1| NADH dehydrogenase subunit 4 [Brienomyrus brachyistius] Length = 460 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 203/362 (56%), Gaps = 12/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L D +S L+VLT +L P IL+S I R Y+ + L++ +I AF + Sbjct: 54 NQYLATDQLSTPLLVLTCWLLPLMILASQNHISPEPINRQRMYITLLISLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQKDLG 173 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S++ + S P + W W +F +K+P++ H W+ A V+AP AGS+ Sbjct: 174 TLSMLTMQYYS--PTKMTAWGDKIWWAGCLLAFLVKMPLYGVHLWITKAQVEAPIAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L PL + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMTIMLTPLTKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTNYERTHSRTLLLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + +AN+ LP +GE ++I S+F S +L G +++A YSL+ Sbjct: 351 MILPLMAAWWFIANLANLALPPLPNLMGELMIITSMFNWSYWTLLLTGLGTLITAAYSLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|145567229|gb|ABP82004.1| NADH dehydrogenase subunit 4 [Microcebus mittermeieri] Length = 459 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 195/355 (54%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QDSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYGRIHSRTMLLARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SNT ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNTTIIMTGLNMLITALYSLYM 410 >gi|55139556|gb|AAV41404.1| NADH dehydrogenase subunit 4 [Panthera leo] Length = 456 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 207/370 (55%), Gaps = 28/370 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETLARKKLYITMLIILQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYI---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWAKPISATWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P+ +Q P + LSL ++ S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPMTNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSTLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+M+ F SN VL ++++ALY+ Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIVLMGTNIIITALYT 407 Query: 425 LWLYRKVVFG 434 L++ G Sbjct: 408 LYMLTTTQRG 417 >gi|46403516|gb|AAS92792.1| NADH dehydrogenase subunit 4 [Microcebus rufus] gi|46403521|gb|AAS92796.1| NADH dehydrogenase subunit 4 [Microcebus rufus] gi|47587703|gb|AAT35849.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 196/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMTSFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|156713132|dbj|BAF76630.1| NADH dehydrogenase subunit 4 [Asymmetron lucayanum] Length = 452 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 135/403 (33%), Positives = 218/403 (54%), Gaps = 21/403 (5%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLSLDM 134 L + +++ L L+ +L P +++S + ++ Y F+ ++M+ GA FLS D+ Sbjct: 55 LSANFMAVGLASLSAWLLPLMLMASQQHVKIESMIYQRTFIFCQAMLTGALVLAFLSSDL 114 Query: 135 LLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +L+P ++I WG + Y A +F+ YT GS+ +LF I+ + + Sbjct: 115 ILFYIAFEITLLPTLMLITRWGAQKERYQAGTYFMFYTLVGSLPLLFCIIGQ-YHYNNTL 173 Query: 194 IIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 +D + S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++ Sbjct: 174 CLDTFYYSPLNADYITNFW-WLGCIVAFLVKLPLYGGHLWLPKAHVEAPIAGSMILAGVL 232 Query: 252 LKMGGYGCIRFLL---PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 LK+GGYG +R P+ L+S+ +I L L +I ++ + QTD+K LIAYSS+ Sbjct: 233 LKLGGYGMMRISYLWGPINTLSSE----LILGLGLWGMIGVGIICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V GI SG G GA+ ML+HG+VSSALF Y+R HTR + G + Sbjct: 289 GHMALVAAGILSGSTWGYVGALILMLAHGIVSSALFCLANCWYERSHTRSLIGSRGALMM 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ ++ N+ LP + GE L +++ F S L VL+A YSL+++ Sbjct: 349 FPLLTAAWLLSSLMNLALPPSINLFGELLAMVATFTWSVLSLGLMVITTVLAAGYSLYMF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +G S + LK L+ RE Y + +L + +Y +P Sbjct: 409 GVTQWGYSM-KTFYNLKVLTSRE----YTLILLHLTPALYLIP 446 >gi|108773477|gb|ABG11769.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|108773547|gb|ABG11834.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|108773561|gb|ABG11847.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] Length = 459 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 134/395 (33%), Positives = 215/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMMLASQNHMKKENMMHQKLYISMLISLQILLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +++ P W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 L-SLTTHPLP-STWSNTILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRVSIILDPLTKSLAYPFII-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 296 LVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ ++AN+ LP +GE ++M+ F SN +L + ++++ +YS+++ Sbjct: 356 TTWWLLASLANLALPPLINLMGELFIVMATFSWSNPSMILMATNIIITGMYSMYMIITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 416 RG-KLTSHMNNLQPSHTRELTLMALHIIPLMLLTI 449 >gi|30721825|gb|AAP33787.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095759|gb|AAP43208.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] Length = 456 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 125/374 (33%), Positives = 204/374 (54%), Gaps = 18/374 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++L +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYTNKF----MAMDQISAPLLILAYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L +++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 TLTALLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM ++ ++L S F + +W+A +F +K+P++ H WLP Sbjct: 162 LMALLVM---NNSTDHLNLMMFSTFKLNTTSLTNDTLWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR L P Y+ P I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIRISPILQPTEKLYY-PFIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMMAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S ++ + Sbjct: 337 NSRTLITMRGLQKTSSLMTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFLMPA 396 Query: 415 FGVVLSALYSLWLY 428 G VL+A Y++ ++ Sbjct: 397 IGTVLTAAYTMHMF 410 >gi|257095402|ref|YP_003169043.1| proton-translocating NADH-quinone oxidoreductase subunit M [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047926|gb|ACV37114.1| proton-translocating NADH-quinone oxidoreductase, chain M [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 499 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 129/424 (30%), Positives = 230/424 (54%), Gaps = 12/424 (2%) Query: 55 FDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---- 109 FD G FQ +E WI Y +GVDGIS+L + T L +++ W+ Sbjct: 55 FDAGNPDFQFLESATWITGLGVRYLVGVDGISLLFLPATALLFCGAVVAGWRVTAAASPL 114 Query: 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFF 168 + Y L+LE+ +G F +LD +LF+ +E +L+P++ ++ +WG G+ R AA ++F Sbjct: 115 SPGLYFALLLLLEAATLGVFCALDTILFFFCWEFTLLPLYFLVSLWGVGNGRQAAAVRYF 174 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSII--DLYAM--SKFPFSIQYWMWIAFFCSFAIKIP 224 L G + +LF ++ + + ++ DL + + P +Q+ +++ F +K+P Sbjct: 175 LVMLAGGVPLLFGLLAAVFGQAKGGVLAFDLPTLLATPLPEGVQFVVFLLLLVGFGVKVP 234 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 + P HTWLP+ + AP A + L G LK+G YG IR +PL PLA++ ++ + Sbjct: 235 LVPVHTWLPSIAMGAPAAVTALLVG--LKLGAYGLIRLAIPLAPLAARDLHWLLAGFGTL 292 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 AI+Y + ++ Q++++ ++AY+S++H+G V + + S S ++GA+ ML+ + + F Sbjct: 293 AILYGGVAALAQSNLRGVLAYASLSHVGLVVLALASFSVSALQGALLLMLNFSVSTGGGF 352 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 + + R + DI GG++ +MP + ++F +A +GLPGTSGF E L+I++ Sbjct: 353 LILSFLQRRTGSTDIGHLGGVMRSMPLLSGFFLLFGLAGIGLPGTSGFPAELLIIVAALH 412 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF 464 + + A FG VL+A L +R+ FG V + DL RE ++ A+L + Sbjct: 413 SHTGAGLAALFGTVLAAAAFLAPFRQAFFGPVHNSDVAEAADLLPRETALLLLPALLILA 472 Query: 465 FGIY 468 G+Y Sbjct: 473 IGVY 476 >gi|46403526|gb|AAS92800.1| NADH dehydrogenase subunit 4 [Microcebus rufus] gi|46403531|gb|AAS92804.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 195/355 (54%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMTSFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|157736169|ref|YP_001491418.1| NADH dehydrogenase subunit 4 [Diodon holocanthus] gi|139000790|dbj|BAF51942.1| NADH dehydrogenase subunit 4 [Diodon holocanthus] Length = 460 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 209/389 (53%), Gaps = 15/389 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F ++H+ D +S L+VLT +L P IL+S + R Y+ L+ +I AF Sbjct: 52 FLNHHMATDPLSTPLLVLTCWLLPLMILASQNHMVTEPINRQRMYITLLTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 GATEVIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T ++ L P ++ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NTTGTLSLLTLQYANPLGLTTYAAKLW-WAGCVIAFLVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L L PL + P I L+L II + + QTD+K LI Sbjct: 229 SMILAAVLLKLGGYGMMRILTILDPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMILAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + ++AN+ LP +GE ++I+S+ S L G +++A Y Sbjct: 348 GLQMALPLMTAWWFIASLANLALPPLPNLMGELMIIVSLLNWSWWTLALTGAGTLITAGY 407 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 SL+++ G + + L+ RE Sbjct: 408 SLYMFLMTQRGPTPSH-ITSLEPSHSREH 435 >gi|294486050|gb|ADE87897.1| NADH dehydrogenase subunit 4 [Ochotona roylei] Length = 404 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 206/354 (58%), Gaps = 10/354 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF---REYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F +++LF Sbjct: 3 DPLSTPLLILTFWLLPLMLIASQNHLSKETLSRKKLFISMLVLLQIFLIMTFSVTELILF 62 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ M T + + Sbjct: 63 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYMHNTSGTLNFLI 122 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + M++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 123 IQLMAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 181 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 182 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDMKSLIAYSSVSHMAL 240 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 241 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERTHSRTMILARGLQTILPLMA 300 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++AN+ LP + IGE LVI+S F SN +LA ++++ALY+L++ Sbjct: 301 AWWLLASLANLALPPSINLIGELLVIVSSFSWSNFTIILAGTNMLITALYTLYM 354 >gi|221143494|ref|YP_002519507.1| NADH dehydrogenase subunit 4 [Paraluteres prionurus] gi|219806777|dbj|BAH10430.1| NADH dehydrogenase subunit 4 [Paraluteres prionurus] Length = 460 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 198/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VL+ +L P IL+S + + R Y+ L+ +I AF + + Sbjct: 56 YLATDTLSTPLLVLSCWLLPLMILASQNHLSPEPESRQRLYISLLTSLQFFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ ++ T Sbjct: 116 VMMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALSLLYASTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L S ++W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILQFSEPLHLSTLADKFW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L L PL + P I L+L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRILTILDPLTKELSYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQTIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I ++ S L G +++A YSL+++ Sbjct: 354 PLMTTWWFISSLANLALPPLPNLMGELMIITALINWSWWTIALTGLGTLITAGYSLYMF 412 >gi|164420860|ref|YP_001648770.1| NADH dehydrogenase subunit 4 [Deinagkistrodon acutus] gi|84371444|gb|ABC55899.1| NADH dehydrogenase subunit 4 [Deinagkistrodon acutus] Length = 445 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 128/389 (32%), Positives = 200/389 (51%), Gaps = 27/389 (6%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLL 136 +D IS L+ L+ +L P ++S ++ + R ++ +L+ + F++ ++ L Sbjct: 52 LDSISTPLLSLSYWLLPLTTIASQHAMAKEPLQRQRTFLATLTLLQLFISMTFMAWNLTL 111 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F LYT S+ +L AI+ I Sbjct: 112 MYIMFEATLIPTLIIITRWGQQTERLTAGTYFMLYTLTTSLPLLMAII----------FI 161 Query: 196 DLYAMSKFPF-----SIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + + PF S+ W +W+A +F K+P++ H WLP AHV+AP AGS+ Sbjct: 162 NNLTNTPTPFIQTSHSLSQWTSLLLWLACLTAFLAKMPIYGLHLWLPKAHVEAPIAGSMV 221 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG IR + L + F P I L+L I A+L + QTD+K LIAYS Sbjct: 222 LAAILLKLGGYGIIRMMQILPATKTDMFLPFIV-LALWGAILANLTCLQQTDLKSLIAYS 280 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 SI+HMG V I G+ GAM M++HG SSALF Y+R HTR + G Sbjct: 281 SISHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFH 340 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 + +P + + N+ +P T F E L++ ++F T ++ ++++A YSL Sbjct: 341 NILPMTTTWWLFVNLMNIAIPPTMNFTSELLIMSTLFNWCPTTIIMLGLSMLITASYSLH 400 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + Q + RE ++ Sbjct: 401 MFLSTQMGPTPLNN--QTEPTHSREHLLM 427 >gi|238694144|ref|YP_002922043.1| NADH dehydrogenase subunit 4 [Lutjanus sebae] gi|225639039|gb|ACN97669.1| NADH dehydrogenase subunit 4 [Lutjanus sebae] Length = 460 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 199/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P +L+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMVLASQNHTAHEPLNRQRMYITLLASLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 VIMFYVMFEATLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + + + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSDPLQLTSYGDKMW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVMLDPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQIAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLILTGAGTLITAGYSLYMF 412 >gi|53686442|ref|YP_097215.1| NADH dehydrogenase subunit 4 [Gyrinophilus porphyriticus] gi|51980005|gb|AAU20665.1| NADH dehydrogenase subunit 4 [Gyrinophilus porphyriticus] Length = 457 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 202/362 (55%), Gaps = 11/362 (3%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE----YMIAFLVLESMVIGAFL 130 + +LGVD IS L+VLT +L P IL+S ++ N + Y+ L+ +I AF Sbjct: 52 TNKYLGVDKISSPLLVLTCWLLPLMILASQNHLKTNPQSRQQMYISMLATLQVALIMAFS 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 S ++ LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 112 STELTLFYITFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLFLLTSL 171 Query: 190 KTSSIIDLYAMSKFPF---SIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + S+ +L + + F +W+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 NSLSM-NLLTIHQEMFLMNPTNKLLWLGCLVAFMVKMPLYGAHLWLPKAHVEAPVAGSMI 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR + PL ++ P I L+L ++ L+ QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGIIRITMMFTPLI-EFSYPFII-LALWGVLMTGLICTRQTDLKSLIAYS 288 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 SI+HMG V GA M+SHGL+SSALF Y+R H+R + GL Sbjct: 289 SISHMGLVVAAALIQTPWSFTGATILMISHGLISSALFCLANTNYERTHSRTMLLARGLQ 348 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P ++ ++NM LP T+ GE +++S+F S ++ G +++A Y+L+ Sbjct: 349 TTLPLLTTWWLLSNLSNMALPPTTNLWGELTIMVSLFNWSPWTILITGLGTLITAAYTLY 408 Query: 427 LY 428 ++ Sbjct: 409 MF 410 >gi|145567294|gb|ABP82056.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 196/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTSLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILSPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|213136063|gb|ACJ43618.1| NADH dehydrogenase subunit 4 [Echinotriton andersoni] Length = 459 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 134/416 (32%), Positives = 219/416 (52%), Gaps = 13/416 (3%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVI 126 I + ++ +D IS L++LT +L P +++ ++ N R Y+I +L+ +I Sbjct: 48 ISTMTNLYMMLDPISSPLLILTCWLLPLMTMATQNHLKTNPPSRQRAYLIMLALLQVSLI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM 185 +F S ++++FYI FEA+LIP VII WG +ER+ A F YT GS+ +L A++ + Sbjct: 108 ISFSSTELIMFYIAFEATLIPTLVIITRWGNQTERLNAGVYFLFYTLAGSLPLLIALLTL 167 Query: 186 CWEKKTSSIIDLYAMSKFPFSIQ----YWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPT 241 + S+ + M P Q +W+A +F +K+P++ H WLP AHV+AP Sbjct: 168 QNTMGSLSLTFINVMD--PMMTQNNSNKILWLACLLAFMVKMPLYGVHLWLPKAHVEAPI 225 Query: 242 AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 AGS+ LA ++LK+GGYG IR L L + P L+L + SL+ M QTD+K Sbjct: 226 AGSMILAAVLLKLGGYGTIRIATILTQLTKEMSYP-FMILALWGTVMTSLICMRQTDLKS 284 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYS I+HMG V I + GA+ M+SHGL+SSALF + Y+R ++R + Sbjct: 285 LIAYSPISHMGLVIAAIMIQTPWSMTGAIILMISHGLISSALFCLANLSYERTNSRTLLL 344 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 G +P A ++ ++NM LP + GE +++S+F S ++ G +++A Sbjct: 345 ARGTQTILPLMATWWILTNLSNMALPPSMNLWGELTIVVSLFNWSPWTILITGTGTLITA 404 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFS 477 Y+L+++ G + + L RE ++ + + + P I FS Sbjct: 405 SYTLYMFLMTQRGPTP-PHLNSLSPSHTREHLLMTSHLLPMILLIMKPTLISGMFS 459 >gi|225543870|gb|ACN91383.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 127/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L P + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNP-XTNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+MS F SN +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMSSFSWSNITIILMGINIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|148292224|dbj|BAF62930.1| NADH dehydrogenase subunit 4 [Eumetopias jubatus] gi|148292238|dbj|BAF62943.1| NADH dehydrogenase subunit 4 [Eumetopias jubatus] gi|148292252|dbj|BAF62956.1| NADH dehydrogenase subunit 4 [Eumetopias jubatus] gi|148292266|dbj|BAF62969.1| NADH dehydrogenase subunit 4 [Eumetopias jubatus] gi|150372637|dbj|BAF66102.1| NADH dehydrogenase subunit 4 [Eumetopias jubatus] gi|150372651|dbj|BAF66115.1| NADH dehydrogenase subunit 4 [Eumetopias jubatus] gi|150372665|dbj|BAF66128.1| NADH dehydrogenase subunit 4 [Eumetopias jubatus] Length = 464 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 121/348 (34%), Positives = 191/348 (54%), Gaps = 11/348 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFTATELIMFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS-IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A++ M T + ++ Y P S W +W+A +F +K+P+ Sbjct: 153 TLLGSLPLLVALLYMQNNMGTLNFLMAQYWTQALPNS---WSNILLWLACMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S + A LS+ Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLNPLTS-FMAYPFMMLSMWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPLSYMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R H+R + GL +P A ++ ++ N+ LP T IGE V+M+ F Sbjct: 329 LANSNYERTHSRIMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SN +L ++++ALYSL++ G + ++ +K RE Sbjct: 389 SNATIILMGANIIITALYSLYMLITTQRG-NYTYHIKNIKPSFTRENT 435 >gi|14587633|gb|AAK70610.1|AF224639_4 NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 195/355 (54%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTSLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILSPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|14587598|gb|AAK70590.1|AF224634_4 NADH dehydrogenase subunit 4 [Microcebus rufus] gi|14587605|gb|AAK70594.1|AF224635_4 NADH dehydrogenase subunit 4 [Microcebus rufus] gi|46403576|gb|AAS92840.1| NADH dehydrogenase subunit 4 [Microcebus sp. EELHDZ TAD23] gi|145567249|gb|ABP82020.1| NADH dehydrogenase subunit 4 [Microcebus rufus] gi|145567254|gb|ABP82024.1| NADH dehydrogenase subunit 4 [Microcebus rufus] gi|145567289|gb|ABP82052.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 195/355 (54%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTSLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILSPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|312961698|ref|ZP_07776196.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pseudomonas fluorescens WH6] gi|311283957|gb|EFQ62540.1| proton-translocating NADH-quinone oxidoreductase, chain M [Pseudomonas fluorescens WH6] Length = 245 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 151/234 (64%), Gaps = 2/234 (0%) Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 +K YG +RF LPLFP AS FAP+ L LI I Y + ++ QTDIK+LIA+SS++HM Sbjct: 1 MKTAAYGLLRFALPLFPNASAEFAPIAMTLGLIGIFYGAFLAFAQTDIKRLIAFSSVSHM 60 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G+V IGI+SG + ++GA+ QML+HG+ ++ALF G +Y+RLHTRD+ GG+ + Sbjct: 61 GFVLIGIYSGSQLALQGAVIQMLAHGVSAAALFILSGQLYERLHTRDMREMGGVWSRIAY 120 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + + F A++GLPGT FIGEFL++M F + ++ +A+ G+V ++YSL + + Sbjct: 121 LPAISLFFAAASLGLPGTGNFIGEFLILMGAFVQTPWISAIATSGLVFGSVYSLIMIHRA 180 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 FG +K + V LK + RE MV +AVL ++ G+YP P DT + + + + Sbjct: 181 YFGPAKSDTV--LKGMDARELIMVLGLAVLLIYIGVYPQPFLDTSAATMHGVQQ 232 >gi|256427261|ref|YP_003127027.1| NADH dehydrogenase subunit 4 [Psenes cyanophrys] gi|256353413|dbj|BAH97918.1| NADH dehydrogenase subunit 4 [Psenes cyanophrys] Length = 460 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 201/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NQYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQIFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP VII WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLVIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSAPLQLVSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R + L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMMTMLEPLTKELSYPFIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 VLPLMTTWWFIASLANLALPPLPNLMGELMIITSLFNWSYWTLLLTGTGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|145567191|gb|ABP81974.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] gi|145567210|gb|ABP81989.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] gi|145567215|gb|ABP81993.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] Length = 459 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 196/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKEPLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|57854705|ref|YP_187571.1| NADH dehydrogenase subunit 4 [Luidia quinalia] gi|57506689|dbj|BAD86679.1| NADH dehydrogenase subunit 4 [Luidia quinalia] Length = 459 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 127/356 (35%), Positives = 199/356 (55%), Gaps = 12/356 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKS--IQENFREYM---IAFLVLESMVIGAFLSLDM 134 D +S L++L+ +L P +L+S KS IQ + + + + F++L +++I F SL++ Sbjct: 58 ATDTLSSPLIILSCWLAPISLLASIKSLSIQSHLNQRLFITLIFVILLALLI-TFSSLEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVM---CWEKK 190 LFYI FE +L+P +I WG ER+ A+ F YT GS+ +L A+ + + Sbjct: 117 SLFYIAFETTLLPTHTLIARWGAQKERLQASIYFLFYTLAGSLPLLIALTALYSFSFSLA 176 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 SI +S + W+ +F +K+P++ FH WLP AHV+AP AGS+ LA I Sbjct: 177 IPSININTELSHLSLPLTTLWWLFCLLAFTVKMPIYGFHLWLPKAHVEAPIAGSMILAAI 236 Query: 251 MLKMGGYGCIRFLLPLF-PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 +LK+GGYG IR L F P A+ P++ A+I S++ + QTD+K LIAYSS+ Sbjct: 237 LLKLGGYGLIRTLTIFFLPSANAVSLPLVTICIWGALI-TSVICLRQTDLKALIAYSSVG 295 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HM V GIFS G+ GA+ M++HGL+SSA+F ++Y+R +TR + G Sbjct: 296 HMSIVASGIFSLTTWGISGALILMIAHGLISSAMFCLANLLYERNNTRTLSVTRGFKLVT 355 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P + + ++N+GLP T +GE L+I S+ + + + V A+YSL Sbjct: 356 PLLTLWWTITCVSNLGLPPTPNLLGELLIISSIIDWNTLSFPIITLATVFGAVYSL 411 >gi|83779467|gb|ABC47536.1| NADH dehydrogenase subunit 4 [Vampyressa brocki] Length = 459 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 117/322 (36%), Positives = 183/322 (56%), Gaps = 10/322 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KSYITMLIMLQVFLIMTFTATELIMFYIGFEATLLPTLIIITRWGNQAERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIV-VMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A+V + + ++ Y S P S W +W+A +F +K+P+ Sbjct: 153 TLVGSLPLLVALVHIQNLTGTLNFLLTQYWTSPIPTS---WSTTLLWLACMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + + A LSL Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITILLEPL-TNFMAYPFMMLSLWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + + GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAVLIQTPWSFMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R+H+R + GL +P A ++ ++ N+ LP T IGE +IM+ F Sbjct: 329 LANSNYERVHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELFIIMATFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWL 427 SN L ++L+ALYSL++ Sbjct: 389 SNLSLFLLGLNIILTALYSLYM 410 >gi|11465928|ref|NP_050061.1| NADH dehydrogenase subunit 4 [Pedinomonas minor] gi|4378772|gb|AAD19670.1| NADH dehydrogenase subunit 4 [Pedinomonas minor] Length = 478 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 127/360 (35%), Positives = 200/360 (55%), Gaps = 10/360 (2%) Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 F+S D+L F+I FE LIP+F I+ +G S +I+AA+ + T FGS F L + Sbjct: 121 TFISQDLLTFFIGFEFVLIPLFWIVIEFGSRSNKIFAAFFIVILTLFGSCFFLIGFFSIF 180 Query: 187 WEKKTSSIIDL-YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 E + + L +++S S Q ++WI F +K+P+ P H WLP AH +APT GSV Sbjct: 181 LEISSLNFNFLSFSLSYLSESRQSFIWIFLFLGLMVKVPLIPLHLWLPEAHGEAPTVGSV 240 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LAG++LK+G YG IR L+ LF + ++F + +++A+L+S+ Q DIKK IAY Sbjct: 241 LLAGVVLKLGTYGLIRCLVFLFSNVEVFIGSILFAYGFLNMVFAALISIRQLDIKKAIAY 300 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SIAH+G V IG+ G++ ++ HGLVS LFF VG +YDR TR+I+ +G L Sbjct: 301 GSIAHIGTVVIGLSEVFNFSEFGSVIIIIFHGLVSPLLFFLVGSLYDRFGTRNIYYFGSL 360 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 P ++V + + N+ PGT F+GE + +S+ + +L F + ++ Sbjct: 361 ALISPLFSVNWFLAVLGNVAFPGTGSFVGEITIFISLLFMNPFCGILLVFATFANLAWNF 420 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIE 485 L +VVF + + D+SL+E + + +L++F G+ F+ LSS +E Sbjct: 421 LLITRVVFLHYQINYLTFFYDISLKEFVIFLLLNILSIFSGL--------FAFELSSFLE 472 >gi|228014970|gb|ACP50380.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|228014984|gb|ACP50393.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|228014998|gb|ACP50406.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|228015012|gb|ACP50419.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] gi|291464889|gb|ADE05961.1| NADH dehydrogenase subunit 4 [Rattus norvegicus] Length = 459 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 134/395 (33%), Positives = 215/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMMLASQNHMKKENMMHQKLYISMLISLQILLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +++ P W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 L-SLTTHPLP-STWSNTILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRVSIILDPLTKSLAYPFII-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 296 LVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ ++AN+ LP +GE ++M+ F SN +L + ++++ +YS+++ Sbjct: 356 TTWWLLASLANLALPPLINLMGELFIVMATFSWSNPSIILMATNIIITGMYSMYMIITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 416 RG-KLTSHMNNLQPSHTRELTLMALHIIPLMLLTI 449 >gi|189492690|gb|ACE01396.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris] Length = 459 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 127/379 (33%), Positives = 206/379 (54%), Gaps = 9/379 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++ F Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQHHLSKEPLTRKKLYISMLILLQLFLIMTFTASELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIV-VMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLM 178 Query: 196 DLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 Y + P S ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQYWIQPLPNSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L PL + + A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRITTLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP T IGE V+M F SN +L ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPTINLIGELFVVMPSFSWSNITIILMGINIIITALYSLYMLITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERC 453 ++ +K RE Sbjct: 418 -KYSHHIKNIKPSFTRENA 435 >gi|315425031|dbj|BAJ46705.1| NADH dehydrogenase I subunit M [Candidatus Caldiarchaeum subterraneum] Length = 437 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 126/418 (30%), Positives = 215/418 (51%), Gaps = 18/418 (4%) Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FREYMIAFLVLE 122 E Y W+ + S L +D +S V+L T + + S K +++ Y + Sbjct: 10 EEYEWVPFLGLSVGLVLDSLSYPFVLLITLVGFLATVYSGKYMEKEHGLTSYFTLLTLFV 69 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182 +IG L ++ LFYIF+E LIP + +I WG +K+F++T G++ +L I Sbjct: 70 GGMIGVVLVSNLFLFYIFWELMLIPSYALIAYWGTGNPRLIGFKYFIFTHAGALSLLIGI 129 Query: 183 VVMCWEKKTSSIIDLYAMSKFPF-------SIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 W ++++++S+ + + + F A+K+ +FPFHTWLP+A Sbjct: 130 ---AWLAAVFGDLNIFSLSEKAMLASETLRPVLTSIAVLIFIGAAVKMAVFPFHTWLPDA 186 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 H +APT SV L+G+M+K G Y R +L + P I L+LI++++ ++++V Sbjct: 187 HAEAPTPISVLLSGVMIKTGVYAVARLVLGIMPFTMMDLRLPIAILALISMVWGGVMALV 246 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 Q+D+K+L+AYSSI+ +GY+ G+ + +GV+GA+F +L+HG S LF GV+ +H Sbjct: 247 QSDVKRLLAYSSISQIGYIVFGLAAANLAGVQGALFHVLNHGFAKSLLFMAAGVLIHEVH 306 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAV-LAS 414 RDI GGL MP + M+V ++ G P GF+ E+++ + ++ V +A Sbjct: 307 ERDIRKLGGLSSKMPLTTIAMLVGGLSIAGTPPLGGFMSEWMIFAGGVEAGWSIFVAVAV 366 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472 F ++A Y L + R V FG + E +D + P+ L + G PI Sbjct: 367 FATAITAGYYLRMVRAVFFGEGRVEG----RDPGALMTAPMSPLLALVIVLGFLASPI 420 >gi|254674973|dbj|BAH86492.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] Length = 452 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 214/383 (55%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ + + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLIYQRVFVGCQVFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 GSLALDLSYEGVFQLSYLVNFW-WVGCILAFLVKLPLYGAHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGGTAMLSSEVFLALALWGIVVMGGICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLSGSRGLIMM 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ + ++ NM LP GE + +++++ S+ V S G VL+A YSL+L+ Sbjct: 349 FPLISLGWFLMSLMNMALPPAINLFGELVAMVALYNWSSYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 G + + + L ++ RE Sbjct: 409 GMSQLG-NTMKNYKNLYIITSRE 430 >gi|157690794|ref|YP_001488951.1| NADH dehydrogenase subunit 4 [Camelus dromedarius] gi|157394471|gb|ABV53317.1| NADH dehydrogenase subunit 4 [Camelus dromedarius] Length = 459 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 132/391 (33%), Positives = 213/391 (54%), Gaps = 29/391 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DALSAPLLVLTTWLLPLMLIASQSHLSKEPLTRKKVYITMLILLQILLIMTFTASELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 Y+ FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T+ ++ Sbjct: 119 YVLFEATLVPTLIIITRWGSQAERLNAGSYFLFYTLSGSLPLLVALVYI---QNTTGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 M QYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 FLIM-------QYWNQPLMDSWSNALLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL ++Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRLTTMLNPL-TEYMAYPFLMLSLWGMIMTSSICLRQTDLKALIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATTLMVAHGLTSSMLFCLANTNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A+ ++ ++AN+ LP T +GE V+MS F SN +L ++++ALYS Sbjct: 348 LQTLLPLMAMWWLLASLANLALPPTINLLGELFVVMSAFSWSNITIILMGANMMITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L++ G + +K RE ++ Sbjct: 408 LYMLIMTQRG-KHTHHINSIKPTYTRENSLM 437 >gi|284177709|ref|YP_003406712.1| NADH dehydrogenase subunit 4 [Naemorhedus caudatus] gi|213990211|gb|ACJ60515.1| NADH dehydrogenase subunit 4 [Naemorhedus caudatus] Length = 459 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 200/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + ++ ++L+ ++I F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLFISMLILLQLLLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ I + Sbjct: 119 YITFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALI---------HIQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + F +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 VIGSLNF-LILQYWVQPMYNSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L L P+ P I LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRISLLLNPMTDFMSYPFIM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+ S F SN +L +V++ALYS Sbjct: 348 LQTLLPLMAAWWLLASLTNLALPPTINLIGELFVMASTFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|165932431|ref|YP_001650795.1| NADH dehydrogenase subunit 4 [Aulostomus chinensis] gi|154758772|dbj|BAF74919.1| NADH dehydrogenase subunit 4 [Aulostomus chinensis] Length = 460 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 133/381 (34%), Positives = 208/381 (54%), Gaps = 9/381 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL----ESMVIGAFLSLDM 134 L D +S L+VLT +L P IL+S ++ + F+ L + ++ AF + +M Sbjct: 57 LASDPLSAPLLVLTCWLLPLMILASQNHTKQEPTNHQRTFICLLAFLQIFLVAAFGATEM 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+L+P V+I WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 117 IMFYVMFEATLLPTLVLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLFLHSYMGSLS 176 Query: 194 IIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++ L +S P + W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 177 MLTLQFCNISLLPTNASKLWWLACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAIL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR L PL Q P+I L+L +I S + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGMIRISPALVPLTKQLTYPLIA-LALWGVIMTSSICLRQTDLKSLIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V GI + G+ GA+ M++HGL SSALF Y+R HTR + GL P Sbjct: 296 SLVAAGILTQTPWGISGALILMIAHGLTSSALFCLANTSYERTHTRAMLLTRGLQALFPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++AN+ LP +GE +++ S+F S ++ G +++A Y+L+L+ Sbjct: 356 MTAWWFTASLANLALPPLPNLLGELMIMTSLFDWSWWTIIMTGLGTLVTATYTLYLFLTT 415 Query: 432 VFGVSKCEKVQQLKDLSLRER 452 G + + L+ RE Sbjct: 416 QRGPTPAHII-DLQPTHSREH 435 >gi|62161263|ref|YP_214949.1| NADH dehydrogenase subunit 4 [Trachypithecus obscurus] gi|60392096|gb|AAX19329.1| NADH dehydrogenase subunit 4 [Trachypithecus obscurus] Length = 459 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 134/400 (33%), Positives = 213/400 (53%), Gaps = 15/400 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S +L D +S L+ LT +L P I++S + R+ Y+ + L+ +I F+S Sbjct: 53 STYLSSDPLSTPLLTLTAWLLPLMIMASQYHLHNESPLRKKLYLSMMIFLQISLIMTFMS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP +II WG +ER+ A+ F YT GS+ +L ++V + Sbjct: 113 TELILFYISFEATLIPTLIIITRWGNQAERLNASTYFLFYTLAGSLPLLI-MLVFTYNNM 171 Query: 191 TSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S I L ++ + + W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLNIVLLTLTAQELTTTWSHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L PL ++Y A LSL +I S + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMRLASILNPL-TEYMAYPFLMLSLWGMIMTSSTCLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVIMASLIQTPWSFTGAIILMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQI 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + N+ LP T IGE LV+ + F S+ + ++++ALYSL++ Sbjct: 351 LLPLMAFWWFAANLTNLALPPTINLIGELLVMTTSFSWSHVTIMFTGLNMLVTALYSLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + +K RE +++ PI +L++ Sbjct: 411 FTTTQRG-ALTSHIMNMKPSFTRENMLMFMHISPILLLSL 449 >gi|254674987|dbj|BAH86505.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] Length = 452 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 214/383 (55%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ + + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLIYQRVFVGCQVFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 GSLALDLSYEGVFQLSYLVNFW-WVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGATAMLSSEVFLALALWGIVVMGGICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLSGSRGLIMI 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ + ++ NM LP GE + +++++ S V S G VL+A YSL+L+ Sbjct: 349 FPLISLGWFLMSLMNMALPPAINLFGELVAMVALYNWSPYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +G + + + L ++ RE Sbjct: 409 GMSQWG-NTMKNYKNLYIITSRE 430 >gi|145567299|gb|ABP82060.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 195/355 (54%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTSLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILSPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGAAALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|226453484|ref|YP_002791051.1| NADH dehydrogenase subunit 4 [Mus musculus castaneus] gi|118200791|gb|ABK79258.1| NADH dehydrogenase subunit 4 [Mus musculus castaneus] Length = 459 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 132/395 (33%), Positives = 219/395 (55%), Gaps = 19/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S ++++ ++ I+ L+ L+ ++I F + ++++F Sbjct: 59 DPLSTPLIILTAWLLPLMLMASQNHLKKDNNVLQKLYISMLISLQILLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A+++ +K ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALIL---IQKHVGTLN 175 Query: 197 LYAMSKFPFSIQY-W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L +S ++ W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LMILSFTTHTLDTSWSNNLLWLACMMAFLIKMPLYGVHLWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+G YG IR + L PL ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGSYGMIRISIILDPL-TKYMAYPFILLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIASIMIQTPWSFMGATMLMIAHGLTSSLLFCLANSNYERIHSRTMIMARGLQMVFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++AN+ LP + +GE + MS+F SN +L ++++ +YS+++ Sbjct: 355 MATWWLMASLANLALPPSINLMGELFITMSLFSWSNFTIILMGLNIIITGMYSMYMIITT 414 Query: 432 VFGVSKCEKVQ----QLKDLSLRERCMVYPIAVLT 462 G + ++L+L M+ P+ +LT Sbjct: 415 QRGKLTNHMINLQPSHTRELTLMALHMI-PLILLT 448 >gi|254675001|dbj|BAH86518.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] Length = 452 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 214/383 (55%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ + + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLIYQRVFVGCQVFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 GSLALDLSYEGVFQLSYLVNFW-WVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGATAMLSSEVFLALALWGIVVMGGICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLSGSRGLIMI 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ + ++ NM LP GE + +++++ S V S G VL+A YSL+L+ Sbjct: 349 FPLISLGWFLMSLMNMALPPAINLFGELVAMVALYNWSPYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +G + + + L ++ RE Sbjct: 409 GMSQWG-NTMKNYKNLYIITSRE 430 >gi|61200925|gb|AAX39828.1| NADH dehydrogenase subunit 4 [Bombina orientalis] Length = 459 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 131/402 (32%), Positives = 210/402 (52%), Gaps = 17/402 (4%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGA 128 +F ++ L +D +S L++L+ +L P I++S + R Y+ L+ +I A Sbjct: 50 HFTTHILSIDQLSSPLLILSCWLLPIMIIASQNHLATEPLNRQRTYITTLTSLQIALIVA 109 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + +++LFYI FE +LIP ++I WG R+ A F YT GS+ +L A++ + Sbjct: 110 FSATELILFYITFEITLIPTLMLITRWGNQAGRLNAGIYFLFYTLMGSLPLLVALLSL-- 167 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + ++ L P W W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 168 QNSEGTLSTLLMQLNTPIMFTSWANKAWWLACLIAFMVKMPLYGAHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 SV LA I+LK+GGYG +R + L P + A L+L +I S + + QTD+K +I Sbjct: 228 SVVLAAILLKLGGYGIMRISM-LLPASMNNLAYPFIILALWGVIMTSSICLRQTDLKSMI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GA+ M++HGLVSSALF Y+R H+R + Sbjct: 287 AYSSVSHMGLVIAAAMIQTPWSFSGAIVLMVAHGLVSSALFCLANTNYERTHSRTLLLSR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ +P ++ +ANM LP + +GE V++++F S +L G +L+A Y Sbjct: 347 GMQIILPLMGAWWLLSNLANMALPPSPNLMGELSVMVAMFNWSGWTILLTGSGTLLTAAY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVL 461 SL+++ G + + + L RE + + PIA L Sbjct: 407 SLYMFLMTQRGPTP-QHLTALNPTHTREHTLMLLHLLPIAPL 447 >gi|74310596|ref|YP_313729.1| NADH dehydrogenase subunit 4 [Cylindrophis ruffus] gi|73760238|dbj|BAE20036.1| NADH dehydrogenase subunit 4 [Cylindrophis ruffus] Length = 451 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 126/401 (31%), Positives = 211/401 (52%), Gaps = 9/401 (2%) Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMI 116 S +++ + + +L +D +S L+ L+ +L P +++S + + R +++ Sbjct: 38 SLMLLKQNTHLKPLSNLYLSLDSVSAPLLSLSYWLLPLMVIASQHMMNSEPMQRQRTFLM 97 Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGS 175 ++L++++ F + ++ L YI FEA+LIP +II WG SER+ A F +YT S Sbjct: 98 TIMLLQTLISLTFTASNLTLMYIMFEATLIPTLIIITRWGQQSERLTAGTYFIMYTLTTS 157 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 + +L AI+ + T + + + +W+A +F K+PM+ H WLP A Sbjct: 158 MPLLMAILFLNNMSNTPTPFFMTTETTN-TWTNLILWLACLTAFLAKMPMYGLHLWLPKA 216 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP AGS+ LA I+LK+GGYG IR + L + + F P I LSL I A+L + Sbjct: 217 HVEAPIAGSMVLAAILLKLGGYGMIRMMQILPVMKTDAFMPFII-LSLWGAILANLTCLQ 275 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTD+K LIAYSSI+HMG V I + GAM M++HG SS LF + Y+R H Sbjct: 276 QTDLKSLIAYSSISHMGLVIAAIMIQTPWSLAGAMALMIAHGFTSSMLFCLANITYERTH 335 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR + G + +P + + + N+ +P + F GE L++ S+F T ++ Sbjct: 336 TRIMMLTRGFHNILPMMTIWWLSANLMNIAIPPSLNFTGELLILSSLFNWCPTTIIILGL 395 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 ++++A YSL ++ + SK + RE +++ Sbjct: 396 SMLITATYSLHMF--LTTQTSKSSLNLPTQPTHTREHLLLF 434 >gi|156186482|gb|ABU55486.1| NADH dehydrogenase subunit 4 [Rasbora dorsiocellata] Length = 460 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 204/387 (52%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 ++ D +S + LT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YMATDPLSTPFLTLTCWLLPLMILASQNHINPEPINRQRLYISLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLAGSLPLLIALLLL--QQTTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLILQYAQPLAFDSWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R ++ L + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AILLKLGGYGMMRMMIVLDAFNKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGL SS LF Y+R+H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIALMIAHGLTSSMLFCLANTTYERVHSRTMILIRGLQMI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A + +AN+ LP +GE +I ++F S L G +++A YSL+++ Sbjct: 353 FPLTATWWFIANLANLALPPLPNLVGELTIITTMFNWSPWTIALTGMGTLITASYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 413 LMTQRG-QMPSHIMNLSPYHTREHLLM 438 >gi|156878366|ref|YP_001434497.1| NADH dehydrogenase subunit 4 [Agkistrodon piscivorus] gi|94537513|gb|ABF29843.1| NADH dehydrogenase subunit 4 [Agkistrodon piscivorus] Length = 445 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 121/356 (33%), Positives = 189/356 (53%), Gaps = 13/356 (3%) Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYA 163 K + R ++ +L+ + F++ ++ L YI FEA+LIP +II WG +ER+ A Sbjct: 80 KEPLQRQRTFLATLTLLQLFIAMTFMASNLTLMYIMFEATLIPTLIIITRWGQQTERLTA 139 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSF 219 F LYT S+ +L AI+ + T++ + + P W +W+A +F Sbjct: 140 GTYFMLYTLTTSLPLLMAIIFL--NNSTNTPTYFLQLLQPP---NQWTSLLLWLACLTAF 194 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG IR + L + F P I Sbjct: 195 LAKMPIYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRMMQILPTTKTDMFLPFIV 254 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 L+L I A+L + QTD+K LIAYSSI+HMG V I G+ GAM M++HG Sbjct: 255 -LALWGAILANLTCLQQTDLKSLIAYSSISHMGLVVAAIIIQTPWGLSGAMALMIAHGFT 313 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 SSALF Y+R HTR + GL + +P ++ + N+ +P T F GE L++ Sbjct: 314 SSALFCLANTTYERTHTRILILTRGLHNILPMATTWWLLTNLMNIAIPPTMNFTGELLIM 373 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++F T ++ ++++A YSL ++ G ++ Q + RE ++ Sbjct: 374 SALFNWCPTTIIMLGLSMLITASYSLHMFLSTQMGPTQLNN--QTEPTHSREHLLM 427 >gi|108742846|gb|ABG02021.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 129/393 (32%), Positives = 211/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +S+ S+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MIMLSQNLPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP +GE VIM+ F SN ++ ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPFINLVGELFVIMTSFSWSNLTIIMTGLNMLITALYSLYMLTMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +LT+ Sbjct: 418 -KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|2290420|gb|AAD04679.1| NADH dehydrogenase subunit 4 [Rhinopithecus bieti] Length = 459 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 132/400 (33%), Positives = 214/400 (53%), Gaps = 15/400 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S +L D ++ L++LT +L P I++S + R+ Y+ + L+ +I F++ Sbjct: 53 STYLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPLRKKLYLSMMISLQISLIMTFMA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L +++ + Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLTGSLPLLI-MLLFVYNNL 171 Query: 191 TSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S I L ++ + + W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLNIPLLTLTAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L PL ++Y A LSL +I S + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMRLTSILNPL-TEYMAYPFLMLSLWGMIMTSSTCLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVIMASLIQTPWSFTGAIVLMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + N+ LP T IGE LV+M+ F S+ +L ++++ALYSL++ Sbjct: 351 LLPLMAFWWFAANLTNLALPPTINLIGELLVMMTSFSWSHVTIMLTGLNMLITALYSLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 G + + +K RE +++ PI +L++ Sbjct: 411 LVTTQRG-TLTSHIINMKPSFTRENMLMFMHMSPIILLSL 449 >gi|15150788|ref|NP_150624.1| NADH dehydrogenase subunit 4 [Pagurus longicarpus] gi|12025691|gb|AAF63428.2|AF150756_10 NADH dehydrogenase subunit 4 [Pagurus longicarpus] Length = 446 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 147/401 (36%), Positives = 219/401 (54%), Gaps = 27/401 (6%) Query: 68 YHWIDYFCS---YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 YH D++ + + LG D +S +L++L+ ++ + SS K + F+ Y +FL++ Sbjct: 37 YH--DFYLNGLGFGLGTDYLSYILILLSVWIMALVVSSSTKLLF--FKNYSSSFLIVNLF 92 Query: 125 VIGA----FLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFML 179 ++ A F S+D LLFYI FEASLIP ++I WG ERI A YT S+ +L Sbjct: 93 LLLALVFTFSSMDYLLFYISFEASLIPTLILILGWGYQPERIQAGVYMLFYTLLASLPLL 152 Query: 180 FAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS---FAIKIPMFPFHTWLPNAH 236 +I+ + + SI +Y M W F CS F +K+PM+ FH WLP AH Sbjct: 153 VSILYIYKVNGSLSIGLMYNMLTMSSMNMIW----FVCSMMAFVVKLPMYLFHLWLPKAH 208 Query: 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 V+AP AGS+ LAG++LK+GGYG IR +LPLF ++ V LS++ SL+ + Q Sbjct: 209 VEAPVAGSMILAGVLLKLGGYGLIR-ILPLFSELNKSINWVWIGLSILGGFIVSLICLRQ 267 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 D+K LIAYSS+AHMG V G+ G+ GA+ M+ HGL SS +F ++Y+R+ + Sbjct: 268 VDMKSLIAYSSVAHMGLVLSGLVMFGWWGLNGAVVVMVGHGLCSSGMFCLANMVYERMGS 327 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R + GL++ MP A+ + ++ NM P T +GE +IMS+ S + S Sbjct: 328 RSLLINKGLMNFMPSMALWWFLLSIGNMAAPPTINLLGEINLIMSMISWSKLTMIGISLL 387 Query: 417 VVLSALYSLWLYRKVVFGV------SKCE-KVQQLKDLSLR 450 SA Y+L+LY G+ S C KV++ LSL Sbjct: 388 SFFSAAYTLYLYSLSQHGLFSSSLYSCCSGKVREYLVLSLH 428 >gi|254674931|dbj|BAH86453.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] Length = 452 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 214/383 (55%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ + + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLLYQRVFVGCQVFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 GSLALDLSYEGVFQPSYLVNFW-WVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGATAMLSSEVFLALALWGIVVMGGICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLSGSRGLIMI 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ + ++ NM LP GE + +++++ S V S G VL+A YSL+L+ Sbjct: 349 FPLISLGWFLMSLMNMALPPAINLFGELVAMVALYNWSPYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +G + + + L ++ RE Sbjct: 409 GMSQWG-NTMKNYKNLYTITSRE 430 >gi|227018590|ref|YP_002808585.1| NADH dehydrogenase subunit 4 [Tropidophis haetianus] gi|226446150|gb|ACO58443.1| NADH dehydrogenase subunit 4 [Tropidophis haetianus] Length = 451 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 201/367 (54%), Gaps = 9/367 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL----VLESMVIGAF 129 + + + +D IS L+ L+ +L P I++S +++ + + AFL L++ + F Sbjct: 51 YSNLYTNLDTISAPLLTLSYWLLPLTIIASQEAMSKEPLQRQKAFLGTLAALQTTISLTF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 L+ +M Y+ FEA+LIP ++I WG +ER+ A F +YT S+ +L AI+ + Sbjct: 111 LAPNMTTMYVMFEATLIPTLILITRWGQQAERLTAGTYFMMYTLSTSMPLLMAIIFL--N 168 Query: 189 KKTSSIIDLYAMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 +++ + + S+ M W+A +F K+P++ H WLP AHV+AP AGS+ L Sbjct: 169 NTSNTPTPFFIEPQLTSSMTNTMLWLACLMAFLAKMPLYGLHLWLPKAHVEAPIAGSMVL 228 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG IR + L + F P + L+L I A+L + QTD+K LIAYSS Sbjct: 229 AAILLKLGGYGIIRTMQVLPTTKTDLFLPFMV-LALWGAILANLTCLQQTDLKSLIAYSS 287 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V + GAM M++HG SS LF + Y+R HTR + GL + Sbjct: 288 VSHMGLVVAAVMIQTPWATAGAMALMIAHGFTSSMLFCLANINYERTHTRILALTRGLHN 347 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++ +AN+ +P + F GE L++ S+F T +L ++++A YSL + Sbjct: 348 ILPLMTMWWLLANLANIAVPPSMNFTGELLIMSSMFNWCPTTIILLGLSMLITATYSLNM 407 Query: 428 YRKVVFG 434 + G Sbjct: 408 FLSTQTG 414 >gi|108742901|gb|ABG02065.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 130/393 (33%), Positives = 210/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +S+ S+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MIMLSQNLPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L P P I L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRLTTILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP +GE VIM+ F SN ++ V+++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPFINLVGELFVIMTSFSWSNLTIIMTGLNVLITALYSLYMLTMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +LT+ Sbjct: 418 -KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|110432560|gb|ABG73868.1| NADH dehydrogenase subunit 4 [Lepilemur leucopus] Length = 459 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 128/402 (31%), Positives = 206/402 (51%), Gaps = 31/402 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLTLTMWLFPLTIMASQYHLTKEPWERKKHFLSVLISLQLFLIMTFTAAELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ S I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL----------SFIQ 168 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 Y + F + YW MW+A +F IK+P++ H WLP AHV+AP AGS Sbjct: 169 NYMGTLNLFMMTYWTQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL +++ A + L ++ SL+ + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITMILNPL-TKFMAYPFLMVCLWGMVMTSLICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++ M V + I GA M++HGL SS LF Y+R+H R + G Sbjct: 288 YSSVSRMALVIVAILIQTPWSFMGATTLMIAHGLTSSMLFCLANSNYERIHNRTMLLARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++ + N+ +P + +GE + M+VF SN +L ++++A YS Sbjct: 348 LQSLLPLMSTWWLLAGLTNLAMPPSINLVGELFITMAVFSWSNMTIILTGLNMLITATYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCM---VYPIAVLTV 463 L++ G L+ M ++P+ +LT+ Sbjct: 408 LYMLTMTQRGEPPYHAHNFNPSLTRENTLMSMHIFPLLLLTL 449 >gi|145567181|gb|ABP81966.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] gi|145567186|gb|ABP81970.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] gi|145567196|gb|ABP81978.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] Length = 459 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 196/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKEPLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMVAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|256427163|ref|YP_003126936.1| NADH dehydrogenase subunit 4 [Girella punctata] gi|256353315|dbj|BAH97827.1| NADH dehydrogenase subunit 4 [Girella punctata] Length = 460 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 131/359 (36%), Positives = 201/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S R YM L+ +I AF + + Sbjct: 56 YMATDSLSTPLLVLTCWLLPLMILASQNHTALEPLNRQRAYMTLLTSLQIFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ E T Sbjct: 116 VIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQNETGTL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L P F+ + W W +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILQYSKTTPLTTFADKLW-WAGCLLAFLIKMPLYGAHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMMMMLEPLTEEMSYPFIVF-ALWGIIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMVL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+ S +L G +++A YSL+++ Sbjct: 354 PLMTTWWFIASLANLALPPLPNLMGELMIITSLLNWSWWTLLLTGTGTLITAGYSLYMF 412 >gi|197311152|ref|YP_002154604.1| NADH dehydrogenase subunit 4 [Ablennes hians] gi|197304326|dbj|BAG69281.1| NADH dehydrogenase subunit 4 [Ablennes hians] Length = 460 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 128/376 (34%), Positives = 205/376 (54%), Gaps = 12/376 (3%) Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI----QENFRE 113 G S +M W+ + ++ D +S L++LT +L P IL+S + + R Sbjct: 38 GLSWLKMPSETGWVH--LTPYMATDPLSTPLLILTCWLLPLMILASQNHMATEPENRQRT 95 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 Y++ L++ +I AF + ++++FY+ FEA+LIP II WG +ER+ A F YT Sbjct: 96 YILLLTSLQAFLILAFSATEVIMFYVMFEATLIPTLFIITRWGNQTERLNAGTYFLFYTL 155 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFH 229 GS+ +L A++++ T S++ L + P + + W W +F +K+P++ H Sbjct: 156 AGSLPLLIALLLLQNSTGTLSLLTLQLTNPSPLTTYADKIW-WTGCLLAFLVKMPLYGAH 214 Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + P I L+L ++ Sbjct: 215 LWLPKAHVEAPIAGSMILAAVLLKLGGYGMMRIMPVLEPLTKELSYPFII-LALWGVVMT 273 Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 + + QTD+K LIAYSS++HMG V GI GA+ M++HGL SSALF Sbjct: 274 GSICLRQTDLKSLIAYSSVSHMGLVAAGILIQTPWSFTGALILMIAHGLTSSALFCLANT 333 Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 Y+R H+R + GL +P + ++AN+ LP +GE +++ S+F S Sbjct: 334 NYERTHSRTMILARGLQMVLPIMTTWWFLTSLANLALPPLPNLMGELMILTSLFHWSPWT 393 Query: 410 AVLASFGVVLSALYSL 425 L G +++A YSL Sbjct: 394 LALTGLGTLITAGYSL 409 >gi|172045609|sp|A8DQI9|NU4M_AVAUN RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|114224161|gb|ABI54981.1| NADH dehydrogenase subunit 4 [Avahi unicolor] gi|114224166|gb|ABI54985.1| NADH dehydrogenase subunit 4 [Avahi unicolor] gi|114224176|gb|ABI54993.1| NADH dehydrogenase subunit 4 [Avahi unicolor] Length = 459 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 206/359 (57%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + FR+ Y+ + L++ +I F++ +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQYHLAKEPWFRKKSYLSMLITLQTFLIMTFMATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYL--QNSMGSLNL 176 Query: 195 --IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 I+L+ + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 LTINLW-LKELPNS---WSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITMILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I G GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL++ Sbjct: 352 LPLTATWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLYM 410 >gi|16357089|ref|NP_443537.1| NADH dehydrogenase subunit 4 [Cololabis saira] gi|16267056|dbj|BAB70205.1| NADH dehydrogenase subunit 4 [Cololabis saira] Length = 460 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 204/361 (56%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P I++S + + R +++ L+ +I AF + Sbjct: 54 NLYMATDHLSTPLLVLTCWLLPLMIIASQNHMSQEPINRQRTFILLLTSLQIFLILAFSA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP II WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEMIMFYVMFEATLIPTLFIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSVG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L + P S + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQFTNPLPLSSYADKIW-WTGCLLAFLVKMPLYGTHLWLPKAHVEAPIAGSMIL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R +L L PL + P I L+L +I S + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRIMLMLEPLTKELSYPFII-LALWGVIMTSSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V I GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VSHMGLVAAAILIQTPWSFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S +L G++++A YSL++ Sbjct: 352 VLPIMTTWWFLASLANLALPPLPNLMGEIMIVTSLFNWSPWTLLLTGLGMLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|115494701|ref|YP_778730.1| NADH dehydrogenase subunit 4 [Phocarctos hookeri] gi|115344867|emb|CAJ56919.1| NADH dehydrogenase subunit 4 [Phocarctos hookeri] Length = 459 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 189/355 (53%), Gaps = 25/355 (7%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLVLLQLFLIMTFAATELIMFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW------------MWIAFFCS 218 T GS+ +L A++ + T + + +QYW +W+A + Sbjct: 153 TLAGSLPLLVALLYVQNNMGTLNFL----------MVQYWTQTLPNSWSNILLWLACMMA 202 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S + A Sbjct: 203 FMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLNPLTS-FMAYPF 261 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LS+ +I S + + QTD+K LIAYSS++HM V + I GA M++HGL Sbjct: 262 MMLSMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPLSYMGATALMIAHGL 321 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 SS LF Y+R H+R + GL +P A ++ ++ N+ LP T +GE LV Sbjct: 322 TSSMLFCLANSNYERTHSRIMILARGLQTLLPLMAAWWLLASLTNLALPPTINLVGELLV 381 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 +M+ F SN +L ++++ LYSL++ G ++ +K RE Sbjct: 382 VMASFSWSNATIILMGVNIIITTLYSLYMLTTTQRG-KHTHHIKNIKPSFTRENT 435 >gi|9828537|gb|AAG00226.1| NADH dehydrogenase subunit 4 [Ochotona annectens] Length = 460 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 208/362 (57%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVLESM-VIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + ++++F Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLLRKKLFISMLVLLQIFLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLV 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + ++ P + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 IQILTT-PLT-DSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ ++Y A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMVMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP + IGE LVI+S F SN +LA ++++ALY+L++ Sbjct: 356 AAWWLLASLANLALPPSINLIGELLVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQ 415 Query: 433 FG 434 G Sbjct: 416 RG 417 >gi|255761438|gb|ACU32810.1| NADH dehydrogenase subunit 4 [Vulpes vulpes] Length = 459 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 131/389 (33%), Positives = 206/389 (52%), Gaps = 29/389 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQSHLSKEPLIRKKLYISMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLTGSLPLLVALLYI--QNNMGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LM--------IQYWIQPLPSSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L PL P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITTLLNPLTDLMAYPFML-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALY+ Sbjct: 348 LQTLLPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNITIILMGMNIIITALYT 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KHTHHIKNIKPSFTRENA 435 >gi|66276110|ref|YP_238238.1| NADH dehydrogenase subunit 4 [Teratoscincus keyserlingii] gi|52426670|gb|AAU47379.1| NADH dehydrogenase subunit 4 [Teratoscincus keyserlingii] Length = 453 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 119/329 (36%), Positives = 179/329 (54%), Gaps = 6/329 (1%) Query: 81 VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLL 136 +D IS L +L+ +L P +++S + R ++ L++ +I F + ++L Sbjct: 59 MDHISTPLTILSAWLLPLMVMASQFHLSHEVTTRKRLFLTTCAALQTALIMTFATNNLLT 118 Query: 137 FYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++++ S + Sbjct: 119 FYIMFETTLIPTLILITRWGTQAERLNAGTYFLFYTLAGSLPLLIAMLLLYATLNQVSPL 178 Query: 196 DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 L + I MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+G Sbjct: 179 MLTLTQQPTSGINMIMWLACILAFMVKMPLYTLHLWLPKAHVEAPIAGSMVLAAILLKLG 238 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 GYG IR L P + P I L+L +I SLV + QTD+K +IAYSS++HMG VT Sbjct: 239 GYGIIRLTPILTPTTQTIYFPFIV-LALWGMIMTSLVCLRQTDLKSIIAYSSVSHMGLVT 297 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 + GAM M++HGL SS LF Y+R HTR + GL +P Sbjct: 298 AATLIQTPWSITGAMILMVAHGLTSSMLFCLANTNYERTHTRTLLLTRGLQLTLPLMTTW 357 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 ++ + NM LP + +GE L+I+S F Sbjct: 358 WLISGLMNMALPPSINLMGELLIIVSTFN 386 >gi|55979232|ref|YP_145512.1| NADH dehydrogenase subunit 4 [Asymmetron lucayanum] gi|55771047|dbj|BAD72149.1| NADH dehydrogenase subunit 4 [Asymmetron lucayanum] Length = 452 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 134/403 (33%), Positives = 217/403 (53%), Gaps = 21/403 (5%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLSLDM 134 L + +++ L L+ +L P +++S + ++ Y F+ ++++ GA FLS D+ Sbjct: 55 LSANFMAVGLASLSAWLLPLMLMASQQHVKIESMIYQRTFIFCQTVLTGALILAFLSSDL 114 Query: 135 LLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFL-YTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +L+P ++I WG + Y A +F+ YT GS+ +LF I+ + + Sbjct: 115 ILFYIAFEITLLPTLMLITRWGAQKERYQAGTYFMFYTLVGSLPLLFCIIGQ-YHFNNTL 173 Query: 194 IIDL--YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 +D Y + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++ Sbjct: 174 CLDTFYYGPLNTDYITNFW-WLGCILAFLVKLPLYGGHLWLPKAHVEAPIAGSMVLAGVL 232 Query: 252 LKMGGYGCIR---FLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 LK+GGYG +R P+ L+S+ +I L L +I ++ + QTD+K LIAYSS+ Sbjct: 233 LKLGGYGMMRISYLWDPINTLSSE----LILGLGLWGMIGVGIICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V GI SG G GA+ ML+HG+VSSALF Y+R HTR + G + Sbjct: 289 GHMALVAAGILSGSTWGYVGALILMLAHGIVSSALFCLANCWYERSHTRSLIGSRGALMM 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ ++ N+ LP + GE L +++ F S L VL+A YSL+++ Sbjct: 349 FPLLTAAWLLSSLMNLALPPSINLFGELLAMVATFTWSMLSLGLMVITTVLAAGYSLYMF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 +G S + LK L+ RE Y + +L + +Y +P Sbjct: 409 GATQWGYSM-KTFYNLKTLTGRE----YTLVLLHLTPALYLIP 446 >gi|19343512|ref|NP_597977.1| NADH dehydrogenase subunit 4 [Ursus arctos] gi|19110568|gb|AAL85177.1|AF303110_10 NADH dehydrogenase subunit 4 [Ursus arctos] Length = 459 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 124/355 (34%), Positives = 191/355 (53%), Gaps = 11/355 (3%) Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYA 163 K + Y+ ++L+ +I F +++++LFYI FEA+L+P VII WG +ER+ A Sbjct: 86 KETLTRKKLYITMLVLLQLFLIMTFSAMELILFYILFEATLVPTLVIITRWGNQTERLNA 145 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI---IDLYAMSKFPFS-IQYWMWIAFFCSF 219 F YT GS+ +L A++ + S+ + Y + P S ++W+A +F Sbjct: 146 GLYFLFYTLVGSLPLLIALLHT--QNNLGSLNFLLMQYWIQPLPNSWSSMFLWLACMMAF 203 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L PL S + A Sbjct: 204 MVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITTLLSPLTS-FMAYPFM 262 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 LSL +I S + + QTD+K LIAYSS++HM V + + GA M++HGL Sbjct: 263 MLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLT 322 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 SS LF Y+R H+R + GL +P A ++ ++ N+ LP T IGE V+ Sbjct: 323 SSLLFCLANSNYERTHSRTMILARGLQTLLPLMAAWWLLASLTNLSLPPTINLIGELFVV 382 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKC-EKVQQLKDLSLRERC 453 ++ F SN L ++++ALYS LY + KC V+ +K RE Sbjct: 383 VATFSWSNITITLMGTNIIITALYS--LYMLITTQRGKCTNHVKSIKPSFTRENA 435 >gi|68989184|ref|YP_254670.1| NADH dehydrogenase subunit 4 [Tetraodon nigroviridis] gi|82593007|sp|Q4JQH8|NU4M_TETNG RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|63020565|gb|AAY26167.1| NADH dehydrogenase subunit 4 [Tetraodon nigroviridis] Length = 460 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 202/366 (55%), Gaps = 23/366 (6%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQENF---------REYMIAFLVLESMVIGA 128 ++ D +S L++L+ +L P IL+S Q N R Y+ L+ +I A Sbjct: 56 YMATDPLSTPLLILSCWLLPLMILAS----QPNHTAHEPINRQRMYISLLTSLQFFLILA 111 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + +M++FY+ FE +LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 FSATEMIMFYVMFEVTLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL-- 169 Query: 188 EKKTSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + S+ L + P ++ + W W +F +K+P++ H WLP AHV+AP A Sbjct: 170 QNSNGSLSLLTLLHSTPPQLSTYAAKIW-WTGCILAFLVKMPLYGVHLWLPKAHVEAPIA 228 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K L Sbjct: 229 GSMILAAVLLKLGGYGMMRILMTLEPLTKELSYPFII-LALWGVIMTGSICMRQTDLKSL 287 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 IAYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLA 347 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P + ++AN+ LP +GE +++ S+F S L G++++A Sbjct: 348 RGLQMALPLMTAWWFIASLANLALPPLPNLMGELMIVTSLFNWSWWTIALTGLGMLITAG 407 Query: 423 YSLWLY 428 YSL+++ Sbjct: 408 YSLYMF 413 >gi|83779483|gb|ABC47548.1| NADH dehydrogenase subunit 4 [Vampyressa nymphaea] Length = 459 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 181/329 (55%), Gaps = 24/329 (7%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KSYITMLIMLQVFLIMTFAATELIMFYILFEATLLPTLIIITRWGNQAERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW------------MWIAFFCS 218 T GS+ +L A+V I +L F + QYW +W+A + Sbjct: 153 TLVGSLPLLVALV---------HIQNLTGTLNFLLT-QYWTSPISTSWSTTLLWLACMMA 202 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + + A Sbjct: 203 FMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITILLEPL-TNFMAYPF 261 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL +I S + + QTD+K LIAYSS++HM V + + GA M++HGL Sbjct: 262 MMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAVLIQTPWSFMGATALMIAHGL 321 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 SS LF Y+R+H+R + GL +P A ++ ++ N+ LP T IGE + Sbjct: 322 TSSMLFCLANSNYERVHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFI 381 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWL 427 I + F SN L ++L+ALYSL++ Sbjct: 382 ITATFSWSNLSLFLLGLNIILTALYSLYM 410 >gi|310788928|gb|ADP24467.1| NADH dehydrogenase subunit 4 [Cyclocheilichthys armatus] Length = 460 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHINPEPINRQRSYITLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ T Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QQSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 ++ L + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TLSMLVLQYSQTLQLNTWGHMFWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AVLLKLGGYGMMRMMVMLDPLSKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSSALF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE ++I ++F S +L G +++A YSL+++ Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLLGELMIITTLFNWSPWTILLTGLGTLITAGYSLYMF 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + L+ RE ++ Sbjct: 413 LMSQRGPTP-NHIMGLQPFHTREHLLM 438 >gi|254674903|dbj|BAH86427.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] gi|254674917|dbj|BAH86440.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] Length = 452 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 213/383 (55%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ + + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLIYQRVFVGCQVFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 GSLALDLSYEGVFQLSYLVNFW-WAGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGATAMLSSEVFLALALWGIVVMGGICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLSGSRGLIMI 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ + ++ NM LP GE + +++++ S V S G VL+A YSL+L+ Sbjct: 349 FPLISLGWFLMSLMNMALPPAINLFGELVAMVALYNWSPYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +G + + + L ++ RE Sbjct: 409 GMSQWG-NTMKNYKNLYTITSRE 430 >gi|25057777|ref|NP_740006.1| NADH dehydrogenase subunit 4 [Indostomus paradoxus] gi|25005981|dbj|BAC23602.1| NADH dehydrogenase subunit 4 [Indostomus paradoxus] Length = 460 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 206/362 (56%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P IL+S +Q R Y++A L++ +I AF + ++LLF Sbjct: 60 DPLSTPLLALTCWLLPLMILASQNHMQAEPTTRQRTYLLALTALQTFLILAFSATELLLF 119 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 Y+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + T S++ Sbjct: 120 YLMFEATLIPTLILITRWGNQAERLLAGNYFLFYTLAGSLPLLIALLALQNNTGTLSLLI 179 Query: 197 LY----AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +S P ++ +W + +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 180 LQYTANNLSTSPTNLVWW--LGCTVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLL 237 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL + P + LSL +I S + + QTD+K LIAYSS++HMG Sbjct: 238 KLGGYGLLRMVPLLAPLTKEMSYPFMV-LSLWGVIMTSSICLRQTDLKSLIAYSSVSHMG 296 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 VT GI + G GA+ M++HGL SSALF Y+R HTR + GL +P Sbjct: 297 LVTAGILTQTTWGAAGALALMIAHGLTSSALFCLANTNYERTHTRTLSLTRGLQGLLPLM 356 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP + E ++I S+F S +L +L+A YSL + + Sbjct: 357 AAWWLISSLANLALPPLPNLMAELVIITSLFNWSYWSLLLTGTATMLTAWYSLHMATAIQ 416 Query: 433 FG 434 G Sbjct: 417 HG 418 >gi|108742871|gb|ABG02041.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 130/396 (32%), Positives = 211/396 (53%), Gaps = 19/396 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSK-FPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + +S+ P W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 MIMLSQNLP---NLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ N+ LP +GE VIM+ F SN ++ ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPFINLVGELFVIMTSFSWSNLTIIMTGLNMLITALYSLYMLTMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + +K RE + + P+ +LT+ Sbjct: 415 QRG-KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|289183101|ref|YP_003457092.1| NADH dehydrogenase subunit 4 [Diceratias pileatus] gi|288908921|dbj|BAI77166.1| NADH dehydrogenase subunit 4 [Diceratias pileatus] Length = 460 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQSHMAPEPLNRQRMYITLLTSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP ++I WG ++R+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLILITRWGNQTQRLNAGTYFLFYTLAGSLPLLVALLLLQNTTGTL 175 Query: 193 SIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L + P + + W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQYSNPAPLTTYADKLW-WTACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVTLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ + Sbjct: 294 HMGLVVGGILIQTPWGFSGALILMVAHGLTSSALFCLANTNYERTHSRTMILARGMQMLL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE +++ S+F S L G +++A YSL+++ Sbjct: 354 PLMTSWWFIASLANLALPPLPNLMGELMILTSLFNWSYWTIALTGAGTLITAAYSLYMF 412 >gi|95104559|gb|ABF51532.1| NADH dehydrogenase subunit 4 [Semnopithecus entellus] Length = 459 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 203/369 (55%), Gaps = 12/369 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLS 131 S +L D ++ L++LT +L P I++S + + Y+ ++L+ +I F++ Sbjct: 53 STYLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPSRKKLYLSMMILLQISLIMTFMA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L I++M + Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLAGSLPLL--IMLMYTQNS 170 Query: 191 TSSI-IDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ I L ++ +I + W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 LGSLNIMLLTLTAQKLTITWSHSLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR L PL ++Y A LSL +I S + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMIRLTSILNPL-TEYMAYPFLMLSLWGMIMTSSTCLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM VT+ GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 290 SVSHMALVTMASLIQTPWSFTGAVILMIAHGLTSSMLFCLANSNYERTHSRIMMLSRGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + + N+ LP T IG LV+++ F S+ + ++++ALYSL Sbjct: 350 TLLPLMAFWWFMANLTNLALPPTINLIGXLLVVVTSFSWSHVTIMFTGMNMLITALYSLH 409 Query: 427 LYRKVVFGV 435 ++ GV Sbjct: 410 MFTTTQRGV 418 >gi|226464097|ref|YP_002791220.1| NADH dehydrogenase subunit 4 [Rattus praetor] gi|160688841|gb|ABX45254.1| NADH dehydrogenase subunit 4 [Rattus praetor] Length = 459 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 138/395 (34%), Positives = 216/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P IL+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMILASQNHMKKENLTHQKLYISMLISLQILLILTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSTGTLNFLI 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +++ P W MW+A +F IK+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 L-SLTTQPLP-STWSNSIMWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRISIILDPLTKSLAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 296 LVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP +GE ++M+ F SN +L + +V++ +YS+++ Sbjct: 356 ATWWLLASLANLALPPLINLMGELFIVMATFSWSNPSIILTAANIVITGMYSMYMIITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 416 RG-KLTSHMNNLQPSHTRELTLMALHIIPLMLLTI 449 >gi|108742866|gb|ABG02037.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 129/393 (32%), Positives = 211/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +S+ S+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MIMLSQNLPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS +F Y+R+H+R + GL +P A Sbjct: 298 IVAILMQTPWSFMGATALMIAHGLTSSMVFCLANSNYERIHSRTMLLARGLQTFLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP +GE VIM+ F SN ++ V+++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPFINLVGELFVIMTSFSWSNLTIIMTGLNVLITALYSLYMLTMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +LT+ Sbjct: 418 -KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|145567112|gb|ABP81911.1| NADH dehydrogenase subunit 4 [Microcebus berthae] gi|145567117|gb|ABP81915.1| NADH dehydrogenase subunit 4 [Microcebus berthae] gi|145567121|gb|ABP81918.1| NADH dehydrogenase subunit 4 [Microcebus berthae] Length = 459 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 195/355 (54%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVILAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|189031221|gb|ACD74785.1| NADH dehydrogenase subunit 4 [Ochotona hyperborea] Length = 460 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + ++ F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLARKKLFISMLVLLQIFLVMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGINMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|189031219|gb|ACD74784.1| NADH dehydrogenase subunit 4 [Ochotona hyperborea] Length = 460 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + ++ F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLTRKKLFISMLVLLQIFLVMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGINMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|46917262|dbj|BAD18044.1| NADH dehydrogenase subunits 4 [Gazza dentex] Length = 460 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 200/364 (54%), Gaps = 10/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P +L+S + R Y+ L+ ++I AF S ++ Sbjct: 57 MATDSLSTPLLVLTCWLLPLMVLASQHHMSTEPTTRQRTYITLLSSLQILLIMAFSSTEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++++ T S Sbjct: 117 MMFYITFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLISSLPLLIALLILQNTTGTLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L P S + W W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQFTPHMPLSSLTDKLW-WVACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL Q P I L+L +I + + Q+D+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIMPLLEPLTKQLSYPFII-LALWGMIMTGSICLRQSDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G GA+ M++HGL SSALF Y+R H R + GL P Sbjct: 295 MGLVVAGALLQTPWSFSGALILMIAHGLTSSALFCLANTNYERTHNRTMLLTRGLQTTFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A +F++AN+ LP +GE +VI S+F S +L G +++A YSL+++ Sbjct: 355 LMATWWFLFSLANLALPPLPNLMGELMVISSLFNWSPWTLLLTGAGTLITAGYSLYMFLT 414 Query: 431 VVFG 434 G Sbjct: 415 TQRG 418 >gi|145567274|gb|ABP82040.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 194/355 (54%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTSLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSSNLLWLACIMGFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILSPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|46917246|dbj|BAD18034.1| NADH dehydrogenase subunits 4 [Leiognathus stercorarius] Length = 460 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 200/364 (54%), Gaps = 10/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P +L+S + R Y+ L++++I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMLLASQHHMSPEPITRQRTYITLLSSLQALLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++ + T S Sbjct: 117 MMFYITFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLLSSLPLLVALLALQNTTGTLS 176 Query: 194 IIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L + P F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQFSPQMPLSSFTDKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL Q P + L+L +I + + Q+D+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIMPLLEPLTKQLSYPFLL-LALWGMIMTGSICLRQSDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G GA+ M++HGL SSALF Y+R H R + GL P Sbjct: 295 MGLVVAGALLQTPWSFAGALILMIAHGLTSSALFCLANTNYERTHNRTMLLTRGLQTAFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A +F++AN+ LP +GE +VI S+F S +L G +++A YSL++Y Sbjct: 355 LMATWWFLFSLANLALPPLPNLMGELMVISSLFNWSPWTLILTGAGTLITAAYSLYMYLT 414 Query: 431 VVFG 434 G Sbjct: 415 TQRG 418 >gi|157056835|gb|ABV02424.1| NADH dehydrogenase subunit 4 [Strongylocentrotus droebachiensis] Length = 462 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 135/399 (33%), Positives = 208/399 (52%), Gaps = 18/399 (4%) Query: 69 HWIDYFCSYH-----LGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFL 119 HW S+H L D IS L++L+ +L P +++S + R ++ + Sbjct: 45 HWTS---SWHNLSSILASDTISAPLIILSCWLAPIALIASKGHLNNTSNLGQRVFIAMII 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 ++ +I F SL++LLFYI FE +LIP ++I WG ER A F YT FGS+ + Sbjct: 102 IITGALIITFSSLELLLFYIAFETTLIPTLILITRWGAQMERFQAGLYFMFYTLFGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIID---LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L +++ + + SI + L+ + S+ W W +F IK+P++ FH WLP A Sbjct: 162 LISLIAIYVSSSSLSIPNVELLWTTNGSVESLTMW-WALSIVAFLIKMPVYGFHLWLPKA 220 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP AGS+ LA I+LK+GGYG IR + ++ Y + + + S++ + Sbjct: 221 HVEAPVAGSMILAAILLKLGGYGLIRLISLFSTISMNYLSLALIVFCTWGALITSIICIR 280 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTD+K LIAYSS+ HM V IFS G+ GA+ M++HGLVSSALF +Y+R Sbjct: 281 QTDLKALIAYSSVGHMSIVAAAIFSQTSWGMNGALMLMIAHGLVSSALFSLANTVYERSG 340 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR I GL +P + ++ AN+GLP + IGE L++ S+ S + + F Sbjct: 341 TRTIAITRGLKLLLPLSTLWWLLMCAANLGLPPSPNLIGEILILSSLISWSVWLFPIVGF 400 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 V A+YSL +++ G + S RE + Sbjct: 401 ATVFGAIYSLMIFQLSQQGTPSASIINVSSSFS-REHLL 438 >gi|159159437|ref|YP_001542586.1| NADH dehydrogenase subunit 4 [Pyrophorus divergens] gi|124441772|gb|ABN11498.1| NADH dehydrogenase subunit 4 [Pyrophorus divergens] Length = 444 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 201/357 (56%), Gaps = 9/357 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE--YMIAFLVLESMVIGAFLSLD 133 SY LG D IS LL++L+ ++ +++S K +E F +++ + L + F SL+ Sbjct: 49 SYFLGCDYISYLLILLSIWICGLMVMASEKINKEKFFSGFFLVVMVALLFSLFVTFSSLN 108 Query: 134 MLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 + +FY+FFE SLIP ++I WG ERI A F YT F S+ M+ AI + + Sbjct: 109 LFIFYLFFEVSLIPTLILILGWGYQPERIQAGLYMFFYTLFASLPMMVAIFYLYY--GLD 166 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 SI + +KF +++++ F +KIPMF H WLP AHV+AP +GS+ LAGIML Sbjct: 167 SIDYFFLDNKFD---SFFLYLCMIMVFLVKIPMFFVHLWLPKAHVEAPVSGSMILAGIML 223 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L+P+F F + +SL SL+ + Q+DIK LIAYSS++HMG Sbjct: 224 KLGGYGLLR-LMPVFLSVGLKFNYLFVVISLFGGFVISLICLRQSDIKSLIAYSSVSHMG 282 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V GI + G GA+ M++HGL SS LF V Y+RL +R ++ GL++ MP Sbjct: 283 LVLGGIMTMNIWGFYGAVVMMIAHGLCSSGLFCLANVTYERLGSRSLYLNKGLINLMPSM 342 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 ++ + +NM P + +GE ++I S+ +L SA YSL+LY Sbjct: 343 SLWWFLLCSSNMAAPPSLNLMGEIMLINSLVSWGLITVLLLMLSSFFSAAYSLYLYS 399 >gi|289183199|ref|YP_003457183.1| NADH dehydrogenase subunit 4 [Balanoglossus clavigerus] gi|288995542|emb|CBH40144.1| NADH dehydrogenase subunit 4 [Balanoglossus clavigerus] Length = 462 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 131/356 (36%), Positives = 196/356 (55%), Gaps = 9/356 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDML 135 D +S L++L+ +L P +L+S + +Q+ R Y L ++I F +LD+L Sbjct: 58 ATDSLSTPLIILSIWLLPLSLLASRRHLQQEPQPRQRIYSALLCSLTLILIITFSALDLL 117 Query: 136 LFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 LFY+ FEA+LIP +II WG ER+ A F YT F S+ +L A++ + + SI Sbjct: 118 LFYVAFEATLIPTLIIITRWGYQPERLQAGTYFLFYTLFASLPLLIALLTLYNSLASISI 177 Query: 195 -IDLYAMSKFPFSIQYW-MW-IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + + FSI +W +A +F K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 178 PLTILSAQLTQFSINSLSLWCVASIIAFLAKLPIYGTHLWLPKAHVEAPIAGSMILAAIL 237 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IRF +F + + L + + SL+ + QTD+K LIAYSS+ HM Sbjct: 238 LKLGGYGLIRFT-EIFSYPTNTSTTPLMILCVWGALVTSLICIRQTDMKALIAYSSVGHM 296 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V G+FS G+ G++ M++HGLVSSALF + Y+R HTR + GL MP Sbjct: 297 SLVAAGVFSQTCWGIHGSIILMIAHGLVSSALFCLANLSYERTHTRTLALNRGLKLLMPL 356 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ AN+GLP GE +I ++ S + VV SA+Y+L+L Sbjct: 357 STTWWLITAAANLGLPPLPNLFGELFIINALLSWSPITLLTTGLMVVFSAVYTLYL 412 >gi|148922596|ref|YP_001293628.1| NADH dehydrogenase subunit 4 [Mammut americanum] gi|148540938|gb|ABQ86188.1| NADH dehydrogenase subunit 4 [Mammut americanum] Length = 459 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 126/382 (32%), Positives = 204/382 (53%), Gaps = 13/382 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L+VLT +L P +++S + + Y+ ++L+ +I F + D++L Sbjct: 58 LDSLSTPLLVLTIWLLPLMLIASQSHMSPGSTFQKKSYITTIILLQVSLIMTFTATDLVL 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FE +LIP +II WG ER+ A F YT GS+ +L ++++ + +++ Sbjct: 118 LYIMFETTLIPTMIIITRWGNQLERLNAGSYFLFYTLMGSLPLLVTLMLIQNILGSLNLM 177 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L ++K P + W +W+ +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 178 MLPYLTK-PIN-NLWSTNTLWLTCITAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL + Y + LSL +I +S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITILLDPLTT-YMSYPFLMLSLWGMIMSSSICLRQTDMKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V I I GA+ M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIIAIMLQTPWSFMGALALMIAHGLTSSMLFCLANSNYERIHSRTMILTRGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ ++ NM P T IGE L+I + F SN V+++ +Y+L + Sbjct: 355 MATWWLLASLINMAPPPTINLIGELLIITASFSWSNLTIFPMGLNVLITTMYTLHMLTTT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERC 453 G + + +K RE Sbjct: 415 QRGKTP-HHTKSIKPSFTRENT 435 >gi|31095963|gb|AAP43361.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] gi|31095967|gb|AAP43364.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] Length = 456 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 205/374 (54%), Gaps = 18/374 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYANKF----MAMDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L +++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 TLTTLLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM + ++L S F + +W+A +F +K+P++ H WLP Sbjct: 162 LMALLVM---NNLTDHLNLMMFSTFKLNTTSLTNDALWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR + P+ + + P I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIR-ISPILQPTEKLYYPFIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTGAALLQTPMSISGTMILMMAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S ++ + Sbjct: 337 NSRTLITMRGLQKTSSLMTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFLMPA 396 Query: 415 FGVVLSALYSLWLY 428 G VL+A Y++ ++ Sbjct: 397 IGTVLTAAYTMHMF 410 >gi|311788447|gb|ADQ12833.1| NADH dehydrogenase subunit 4 [Lepidogalaxias salamandroides] Length = 460 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 196/363 (53%), Gaps = 20/363 (5%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+ LT ++ P IL+S I + R Y+ +L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLSLTCWILPLMILASQHHILLEPKIQQRTYLTLMTLLQIFLIMAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L+FYI FEA+LIP II WG +ER+ A F YT S+ +L A++++ +K T + Sbjct: 117 LMFYIMFEATLIPTLFIITRWGNQAERLNAGTYFLFYTLASSLPLLTALLLL--QKDTGT 174 Query: 194 IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + L PF IQ W W A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 LSILMVNLNQPFLIQSWGDKIWWAACLLAFLVKMPLYSLHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIR----FLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 I+LK+GGYG +R F LP L + A L+L +I L+ + QTD+K LIAY Sbjct: 235 ILLKLGGYGMMRISATFYLPENVLIYPFMA-----LALWGVIMTGLICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HM V I GA M++HGL SSALF Y+R H+R + G Sbjct: 290 SSVGHMSMVAAAILIQTPWSFAGATILMIAHGLTSSALFCLANTSYERTHSRTMMLARGT 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 + + +V T+AN+ LP +GE ++IMS+F S ++ G +++ YSL Sbjct: 350 QITLNLMSAWWLVATLANLALPPLPNLMGELMIIMSLFNWSYWTLIMTGAGTLITVAYSL 409 Query: 426 WLY 428 +L+ Sbjct: 410 YLF 412 >gi|145567264|gb|ABP82032.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 195/355 (54%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTSLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSGNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILSPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|108742886|gb|ABG02053.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 129/393 (32%), Positives = 211/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLASPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPSLIIITRWGNQTERLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +S+ S+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MIMLSQNLPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP +GE VIM+ F SN ++ V+++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPFINLVGELFVIMTSFSWSNLTIIMTGLNVLITALYSLYMLTMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +LT+ Sbjct: 418 -KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|189031217|gb|ACD74783.1| NADH dehydrogenase subunit 4 [Ochotona hyperborea] Length = 460 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + ++ F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLTRKKLFISMLVLLQIFLVMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGINMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|9828509|gb|AAG00212.1| NADH dehydrogenase subunit 4 [Ochotona hyperborea] Length = 460 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + ++ F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLPRKKLFISMLVLLQIFLVMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSVLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|187250419|ref|YP_001874836.1| NADH dehydrogenase subunit 4 [Naemorhedus swinhoei] gi|145967298|gb|ABP99014.1| NADH dehydrogenase subunit 4 [Naemorhedus swinhoei] Length = 459 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 125/363 (34%), Positives = 194/363 (53%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG----AFLSLDMLLF 137 D +S L++LT +L P +++S + + F+ + ++ F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLARKKLFISMLILLQLLLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG ++R+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQADRLNAGLYFLFYTLAGSLPLLVALIHI---QNTIGSLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 FLV-------LQYWVQPMSNSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L P+ P I LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMMRVTPFLNPITDSMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V+MS F SN +L +V++ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGLNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|306977500|gb|ADN11991.1| NADH dehydrogenase subunit 4 [Heteronotia binoei] Length = 452 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 127/369 (34%), Positives = 199/369 (53%), Gaps = 16/369 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSWK--SIQENFREYMIAFLVLESMVIGAFLSLDM---- 134 +D I+ L +L+ +L P I+++ + + N R+ M FL +M+ L Sbjct: 59 LDPITTPLAILSAWLLPLMIIANQNITAPEPNNRKRM--FLATCAMLQTTLLLTFTTTDL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY FE +LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 117 VMFYALFETTLIPTLILITRWGAQAERLSAGTYFIFYTLTGSLPLLVALLYIH-STNNHT 175 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 +I + M++ MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK Sbjct: 176 LIPILIMNQPALMPTNLMWLACMTAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLK 235 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG IR L L P P I L+L +I SL+ + QTD+K +IAYSS++HMG Sbjct: 236 LGGYGIIRLTLTLTPTTQTMHFPFI-VLALWGMIMTSLICLRQTDLKSIIAYSSVSHMGL 294 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 VT + GAM M++HGL SS LF Y+R HTR + GL +P Sbjct: 295 VTAASLIQTPWSIHGAMLLMIAHGLTSSMLFCLANTNYERTHTRTLLLVRGLQLALPLMT 354 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ + NM LP T +GE ++IM++F + T +L +++A+YSL +F Sbjct: 355 TWWLLSNLMNMALPPTINLLGELMIIMTLFNWNMTTIILTGSATLITAMYSL-----HIF 409 Query: 434 GVSKCEKVQ 442 ++ K+Q Sbjct: 410 LTTQQNKLQ 418 >gi|189031207|gb|ACD74778.1| NADH dehydrogenase subunit 4 [Ochotona collaris] Length = 460 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + ++ F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLTRKKLFISMLVLLQIFLVMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILAR-PLTDSWSNSLLWLACMTAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGANMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|145567062|gb|ABP81871.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 128/393 (32%), Positives = 211/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +S+ S+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MIMLSQNLPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAVLMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP +GE VIM+ F SN ++ ++++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPFINLVGELFVIMTSFSWSNLTIIMTGLNMLITALYSLYMLTMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +LT+ Sbjct: 418 -KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|254674861|dbj|BAH86388.1| NADH dehydrogenase subunit 4 [Branchiostoma floridae] Length = 452 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 214/383 (55%), Gaps = 11/383 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLS 131 SY + D +S+ L VL+ +L P +L+S + + Y F+ + + GA F++ Sbjct: 52 SYMMTSDFVSLGLTVLSIWLLPLMLLASQQHMVSESLIYQRVFVGCQVFLTGALVLAFMA 111 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKK 190 D+LLFYI FE++L+P ++I WG + Y A +F++ T GS+ +L ++ ++ Sbjct: 112 SDLLLFYIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLICLIGQ-YQMV 170 Query: 191 TSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 S +DL F S + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 171 GSLALDLSYEGVFQLSYLVNFW-WVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLA 229 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 G++LK+GGYG +R L ++ + + V L+L I+ + + QTD+K LIAYSS+ Sbjct: 230 GVLLKLGGYGMMRVSL-MWGATAMLSSEVFLALALWGIVVMGGICLRQTDLKSLIAYSSV 288 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V G+ +G+ G GAM M++HGLVSS LF + Y+R TR++ GL+ Sbjct: 289 GHMALVVGGVLTGVAWGYNGAMVLMIAHGLVSSCLFCLANLWYERSSTRNLSGSRGLMMI 348 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P ++ + ++ NM LP GE + +++++ S V S G VL+A YSL+L+ Sbjct: 349 FPLISLGWFLMSLMNMALPPAINLFGELVAMVALYNWSPYSIVYMSLGAVLTAAYSLYLF 408 Query: 429 RKVVFGVSKCEKVQQLKDLSLRE 451 +G + + + L ++ RE Sbjct: 409 GMSQWG-NTMKNYKNLYVITSRE 430 >gi|16356963|ref|NP_443524.1| NADH dehydrogenase subunit 4 [Mugil cephalus] gi|16267027|dbj|BAB70179.1| NADH dehydrogenase subunit 4 [Mugil cephalus] Length = 460 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 137/363 (37%), Positives = 203/363 (55%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFLV-LESMVIGAF 129 F H+ D +S L+VLT +L P IL+S I EN + I L L+ +I AF Sbjct: 52 FLGPHMATDPLSTPLLVLTCWLLPLMILASQNHISPEPENRQRMYITLLTSLQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M +FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 GATEMFMFYVMFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L FP S + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQFCPPFPLSSYADKMW-WAGCLIAFLVKMPLYGAHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R ++ L PL + P I F +L II + + QTD+K LIAY Sbjct: 231 VLAAVLLKLGGYGMMRMMMLLEPLTKELSYPFIIF-ALWGIIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVAAGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMTSWWFIASLANLALPPLPNLMGELMIISSLFNWSWWTLTLTGIGTLITAAYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|215399137|ref|YP_002332267.1| NADH dehydrogenase subunit 4 [Phoenicolacerta kulzeri] gi|213983285|gb|ACJ54969.1| NADH dehydrogenase subunit 4 [Phoenicolacerta kulzeri] Length = 460 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 202/368 (54%), Gaps = 10/368 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDML 135 D S L++L+ +L P IL+S ++ R +++ L++ +I F + D++ Sbjct: 58 STDTTSAPLIILSCWLLPLMILASQNHLKTEPLNRKRVFLMTLTTLQTTLILTFSTSDLI 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 LFYI FE +LIP +II WG +ER+ A F YT S+ +L A++ + K ++ Sbjct: 118 LFYILFETTLIPTLIIITRWGAQAERLNAGLYFLFYTLASSLPLLIALLYLN-NKYLNTS 176 Query: 195 IDLYAMSK---FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++L+ + + P W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 177 MELFFIKQPELTPNPSNQVFWLACLLTFLVKLPLYGLHLWLPKAHVEAPIAGSMALAAIL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG IR L P P+I L+L I+ S + + QTD+K LIAYSS++HM Sbjct: 237 LKLGGYGLIRISPILTPHPPALMLPIIV-LALWGILMTSSICLRQTDLKALIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V I G+ GA+ M++HGL SSALF Y+R HTR + GL +P Sbjct: 296 GLVASAIILQTPWGLTGALTLMIAHGLTSSALFSLANTNYERTHTRTLLLVRGLQLALPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ + NM +P + +GE +I ++F S+ ++ G +++A YSL+++ Sbjct: 356 MSTWWLLINLTNMAMPPSINLVGELSIITALFNWSSPTIIITGVGTLITATYSLYMFLMT 415 Query: 432 VFGVSKCE 439 G+ + Sbjct: 416 QRGMMSTQ 423 >gi|109689591|ref|YP_659469.1| NADH dehydrogenase subunit 4 [Presbytis melalophos] gi|88174270|gb|ABD39275.1| NADH dehydrogenase subunit 4 [Presbytis melalophos] Length = 459 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 199/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ + L+ +I F++ +M+LFYI FE +LIP +II WG +ER+ A+ F LY Sbjct: 93 KLYLSMMIFLQISLITTFMATEMILFYILFETTLIPTLIIITRWGNQAERLNASTYFLLY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMF 226 T GS+ +L I++M S+ I L ++ + + W+A +F +K+P++ Sbjct: 153 TLAGSLPLL--IMLMYLHNNLGSLNIVLLTLTAQKLTANWCHSLTWLACMMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +RF L PL ++Y A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRFTSILSPL-TEYMAYPFLMLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I SL + QTD+K LIAYSS++HM V + GA+ M++HGL SS LF Sbjct: 270 IMTSLTCLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAIVLMIAHGLTSSMLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A + + NM LP T IGE LV+M F S Sbjct: 330 ANSNYERTHSRIMALSRGLQTLLPLMASWWFMANLTNMALPPTINLIGELLVMMISFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 + +L ++++ALYSL+++ G+ + +K RE +++ PI +L+ Sbjct: 390 HITIMLMGLNMLITALYSLYMFTTTQRGM-LTSHIINMKPSFTRENMLMFMHISPIILLS 448 Query: 463 V 463 + Sbjct: 449 I 449 >gi|9828533|gb|AAG00224.1| NADH dehydrogenase subunit 4 [Ochotona cansus morosa] gi|9828535|gb|AAG00225.1| NADH dehydrogenase subunit 4 [Ochotona cansus stevensi] Length = 460 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 208/362 (57%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + ++++F Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLLRKKLFISMLVLLQIFLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLV 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + ++ P + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 IQILTT-PLT-DSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ ++Y A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMVMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP + IGE LVI+S F SN +LA ++++ALY+L++ Sbjct: 356 AAWWLLASLANLALPPSINLIGELLVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQ 415 Query: 433 FG 434 G Sbjct: 416 RG 417 >gi|9828499|gb|AAG00207.1| NADH dehydrogenase subunit 4 [Ochotona thibetana] gi|9828523|gb|AAG00219.1| NADH dehydrogenase subunit 4 [Ochotona curzoniae] Length = 460 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 208/362 (57%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + ++++F Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLLRKKLFISMLVLLQIFLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLV 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + ++ P + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 179 IQILTT-PLT-DSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ ++Y A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMVMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP + IGE LVI+S F SN +LA ++++ALY+L++ Sbjct: 356 AAWWLLASLANLALPPSINLIGELLVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQ 415 Query: 433 FG 434 G Sbjct: 416 RG 417 >gi|177543329|gb|ACB73057.1| NADH dehydrogenase subunit 4 [Colobus vellerosus] Length = 459 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 143/447 (31%), Positives = 233/447 (52%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHGLIISLIPLLFFNQASSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQ-EN---FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 ++S + EN + Y+ + L+ +I F++ +++LFYI FE +LIP +II Sbjct: 75 LMTMASQYHLHNENPSRKKIYLSMMIFLQISLIMTFMATELILFYILFETTLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYIYNGLGSLNIMFLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L PL Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTPILNPL- 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 ++Y A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A V + N+ LP T Sbjct: 314 ILMIAHGLTSSMLFCLANSNYERTHSRIMMLSRGLQTLLPLMAFWWFVANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G + +K R Sbjct: 374 NLMGELLVMMTSFSWSHITIMLTGLNMLITALYSLYMYITTQRG-PLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E ++ PI +L+ + G+ P Sbjct: 433 ENMLMLMHLSPIILLSLNPNIIMGLTP 459 >gi|197107594|gb|ACH42377.1| NADH dehydrogenase subunit 4 [Petalonia fascia] Length = 197 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 103/195 (52%), Positives = 137/195 (70%), Gaps = 2/195 (1%) Query: 97 PFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG 156 P C+L+SW + + + Y+I+FL +E ++I F +LD+L FYIFFEA LIPMF++IG++G Sbjct: 4 PICLLASWSFDKGDIKTYLISFLSMEIVLILVFTNLDLLFFYIFFEAVLIPMFLVIGIYG 63 Query: 157 GSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF 215 +R I AAY FFLYT FGS+FML V+ + S+ + + F F Q W+W+AF Sbjct: 64 SRQRKIRAAYMFFLYTLFGSLFMLIG-VIYIYLFSGSTNFEALSTVGFSFYDQKWLWLAF 122 Query: 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFA 275 F SFA K+PM P H WLP AHV+APTAGSV LAGI+LK+G YG +RF L LFP AS YF Sbjct: 123 FASFAAKVPMLPVHIWLPEAHVEAPTAGSVILAGILLKLGSYGVLRFSLGLFPDASVYFT 182 Query: 276 PVIFFLSLIAIIYAS 290 P +F LSL+ ++Y S Sbjct: 183 PFVFSLSLLGVVYRS 197 >gi|213136217|gb|ACJ43761.1| NADH dehydrogenase subunit 4 [Pachytriton labiatus] Length = 458 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 135/391 (34%), Positives = 217/391 (55%), Gaps = 14/391 (3%) Query: 50 FVWSVFDKGRSSFQMIEYYHWIDY------FCSYHLGVDGISILLVVLTTFLTPFCILSS 103 ++W+ F S MI W++ F + + VD +S L+VLT +L P L+S Sbjct: 22 WLWTHFVVNSSIIAMISLT-WLNLPFEFSNFTNMLMSVDSVSSPLLVLTCWLLPLMTLAS 80 Query: 104 WKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS- 158 + ++ + R Y++ +L+ +I AF S ++++FYI FE +LIP +II WG Sbjct: 81 QEHLKTSPLPRQRTYLVMLTLLQMSLIIAFSSTELIMFYIAFETTLIPTIIIITRWGNQV 140 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF-PFSIQYWMWIAFFC 217 ER+ A F YT GS+ +L A++V+ + SI M P ++ +W+A Sbjct: 141 ERLNAGTYFLFYTLAGSLPLLVALLVLQDSIGSLSIALFNVMEPMMPQTMHQNLWLACLL 200 Query: 218 SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277 +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG IR L P+ + P Sbjct: 201 AFMVKMPLYRAHLWLPKAHVEAPVAGSMILAAVLLKLGGYGIIRITTILVPMTKEMSYP- 259 Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337 L+L ++ SL+ M QTD+K LIAYSS++HMG V I V GA+ M+SHG Sbjct: 260 FMVLALWGVVMTSLICMRQTDLKSLIAYSSVSHMGLVIAAIMIQTPWSVTGAVILMISHG 319 Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 L+SSALF + Y+R H+R + G +P A ++ ++NM LP + GE Sbjct: 320 LISSALFCLANMNYERTHSRTLLLVRGAQAILPLMATWWLITNLSNMALPPSMNLWGELT 379 Query: 398 VIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +++S+F S ++ G +++A Y+L+++ Sbjct: 380 LMVSLFNWSPWTILITGTGTLITASYTLYMF 410 >gi|83779475|gb|ABC47542.1| NADH dehydrogenase subunit 4 [Vampyressa nymphaea] Length = 459 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 181/329 (55%), Gaps = 24/329 (7%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KSYITMLIMLQVFLIMTFAATELIMFYILFEATLLPTLIIITRWGNQAERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW------------MWIAFFCS 218 T GS+ +L A+V I +L F + QYW +W+A + Sbjct: 153 TLVGSLPLLVALV---------HIQNLTGTLNFLLT-QYWTSPISTSWSTTLLWLACMMA 202 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + + A Sbjct: 203 FMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITILLEPL-TNFMAYPF 261 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL +I S + + QTD+K LIAYSS++HM V + + GA M++HGL Sbjct: 262 MMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAVLIQTPWSFMGATALMIAHGL 321 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 SS LF Y+R+H+R + GL +P A ++ ++ N+ LP T IGE + Sbjct: 322 TSSMLFCLANSNYERVHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELFI 381 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWL 427 I + F SN L ++L+ALYSL++ Sbjct: 382 ITATFSWSNLSLFLLGLNIILTALYSLYM 410 >gi|330371418|gb|AEC12681.1| NADH dehydrogenase subunit 4 [Hypselobarbus dubius] Length = 375 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/349 (34%), Positives = 193/349 (55%), Gaps = 9/349 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 R Y+ L++ +I AF + ++++FYI FEA+LIP +II WG +ER+ A F Y Sbjct: 9 RSYISLLASLQTFLIMAFGATEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFY 68 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++++ ++ T ++ L P + W W +F +K+P++ Sbjct: 69 TLAGSLPLLVALLLL--QQSTGTLSMLVLQYSQPLQLNSWGHMIWWAGCLIAFLVKMPLY 126 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R ++ L P++ + P I L+L I Sbjct: 127 GVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMMVMLDPMSKELAYPFII-LALWGI 185 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I + + QTD+K LIAYSS++HMG V GI G GA+ M++HGLVSSALF Sbjct: 186 IMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFSGAIILMIAHGLVSSALFCL 245 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL P A + +AN+ LP +GE ++I ++F S Sbjct: 246 ANTAYERTHSRTMILARGLQVIFPLTATWWFLANLANLALPPLPNLMGELMIITTLFNWS 305 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 +L G +++A YSL+++ G + L+ RE ++ Sbjct: 306 PWTILLTGLGTLITAGYSLYMFLMSQRG-QVPNHITGLQPFHTREHLLM 353 >gi|121582425|ref|YP_980239.1| NADH dehydrogenase subunit 4 [Varanus niloticus] gi|121309441|dbj|BAF44053.1| NADH dehydrogenase subunit 4 [Varanus niloticus] Length = 457 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 198/356 (55%), Gaps = 10/356 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++L+ +L P ++ ++ R +++ +L+ ++ F + +++L Sbjct: 59 IDQMSAPLLILSCWLLPIMATANQNHLKNEPTIRKRMFLMTITILQVFLLMTFTANNLML 118 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FEA+LIP +II WG +ER+ A F YT S+ +L +I+ + T I Sbjct: 119 LYISFEATLIPTLIIITRWGSQAERLKAGTYFLFYTLASSLPLLISILYLNHLLPTPLIP 178 Query: 196 DLYA---MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++ + S S + +W +FA+K+P++ FH WLP AHV+AP AGS+ LA I+L Sbjct: 179 EILSNQLKSTNTLS-ETLLWFGCLTAFAVKMPLYGFHLWLPKAHVEAPIAGSMVLAAILL 237 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 KMGGYG IR L L PL P++ ++ II SL + QTD+K LIAYSSI+HMG Sbjct: 238 KMGGYGMIRILPTLNPLTPSLLFPLLT-MATWGIIMTSLTCLRQTDLKSLIAYSSISHMG 296 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I + G+ G+M M++HGL SS LF Y++ TR + GL +P Sbjct: 297 LVISAILTQTSMGLAGSMLLMIAHGLTSSLLFCLANTNYEQTQTRTLLITRGLHIVLPLM 356 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + + ++ANM LP T IGE +I S+F S +L G +L+A Y+L+++ Sbjct: 357 TLWWLYASLANMALPPTINLIGELTIITSLFSWSPLTILLTGTGTLLTASYTLYMF 412 >gi|289183283|ref|YP_003457261.1| NADH dehydrogenase subunit 4 [Chaunax pictus] gi|288908795|dbj|BAI77049.1| NADH dehydrogenase subunit 4 [Chaunax pictus] Length = 460 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 202/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L++LT +L P IL+S ++ R Y++ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLILTCWLLPLMILASQNHMRPEPAGRQRTYIMLLTSLQIFLIMAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLILQNNTGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L ++ F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLALQYSAPIALTTFASKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L+ L L + P I L+L +I + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMLVILNLLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVVGGILIQTPWGFTGALTLMIAHGLTSSALFCLANTNYERTHSRTMILARGLQILLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE +++ S+F S L G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSYWTLALTGGGTLITAGYSLYMF 412 >gi|145567304|gb|ABP82064.1| NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 196/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTSLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILSPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINRIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|195661138|ref|YP_002117863.1| NADH dehydrogenase subunit 4 [Epinephelus coioides] gi|153973776|gb|ABS54445.1| NADH dehydrogenase subunit 4 [Epinephelus coioides] Length = 460 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 128/365 (35%), Positives = 202/365 (55%), Gaps = 12/365 (3%) Query: 74 FCSYHL--GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIG 127 +C+ +L D +S L+VLT +L P IL+S R Y+ L+ +I Sbjct: 50 WCTLNLFMATDPLSTPLLVLTCWLLPLMILASQNHTATEPINRQRMYISLLTSLQIFLIL 109 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 AF + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 110 AFGATEMIMFYVMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQ 169 Query: 187 WEKKTSSIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T S+ L + ++ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NYTGTLSLFTLPYSCPLHLSSYTDKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R ++ L PL P + F +L +I + + QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRMVVMLDPLTKDLSYPFLIF-ALWGVIMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + ++AN+ LP +GE ++I S+F S +L G +++A Y Sbjct: 348 GLQIILPLMTAWWFIASLANLALPPLPNLMGELMIIASLFNWSWWTIILTGGGTLITASY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|51339418|gb|AAU00472.1| NADH dehydrogenase subunit 4 [Ailurus fulgens] Length = 459 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 120/354 (33%), Positives = 198/354 (55%), Gaps = 12/354 (3%) Query: 108 QENF---REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYA 163 +E F + Y+ ++L++ +I F + ++++FYI FEA+L+P +II WG +ER+ A Sbjct: 86 KETFTRKKLYITMLIMLQAFLIMTFTATELIMFYILFEATLVPTLIIITRWGSQAERLNA 145 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSF 219 F YT GS+ +L A++ + + T + + + + + P + W +W+A +F Sbjct: 146 GLYFLFYTLMGSLPLLIALLYIQNDMGTLNFLAIQYLYQ-PL-LNSWSNALLWLACMMAF 203 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + P + Sbjct: 204 MVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLSPLTNLMAYPFMM 263 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 LSL +I S + + QTD+K LIAYSS++HM V + I GA M++HGL Sbjct: 264 -LSLWGMIMTSSICLRQTDLKALIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLT 322 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 SS +F Y+R+H+R + GL +P A+ ++ ++ N+ LP IGE VI Sbjct: 323 SSMMFCLANSNYERIHSRTMILARGLQTLLPLMAMWWLLASLTNLALPPQINLIGELFVI 382 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 M++F SN +L V+++ALYSL++ G ++ +K RE Sbjct: 383 MALFSWSNFTIILMGINVIITALYSLYMLTTTQRG-KYSYHIKNIKPSFTRENA 435 >gi|157736211|ref|YP_001491353.1| NADH dehydrogenase subunit 4 [Triacanthodes anomalus] gi|139000709|dbj|BAF51877.1| NADH dehydrogenase subunit 4 [Triacanthodes anomalus] Length = 460 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 203/365 (55%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F S ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLSPYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYISLMTSLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 GATEIIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T ++ L P ++ + W W +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NTTGTLSLLTLQYSDPTQLISYADKLW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LI Sbjct: 229 SMILAAVLLKLGGYGMMRMLAVLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + + ++AN+ LP +GE +VI+S+F S L G +++A Y Sbjct: 348 GLQMALPLMTMWWFIASLANLALPPLPNLMGELMVIVSLFNWSWWTLALTGAGTLITASY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|108767348|ref|YP_636144.1| NADH dehydrogenase subunit 4 [Phenacobius mirabilis] gi|105873677|gb|ABF74900.1| NADH dehydrogenase subunit 4 [Phenacobius mirabilis] Length = 460 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 140/387 (36%), Positives = 212/387 (54%), Gaps = 13/387 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S I+ R Y+ L++ +I AF + + Sbjct: 56 YLATDPLSTPLLVLTCWLLPLMILASQNHIKPEPAARQRLYITLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ +K T Sbjct: 116 IIMFYVMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLAGSLPLLVALLLL--QKSTG 173 Query: 193 SIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + L P + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 174 TSSLLIIQYTPPLLVNSWSHKIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLA 233 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R ++ L PL+ + P I L+L II + + QTD+K LIAYSS+ Sbjct: 234 AILLKLGGYGMMRMMMVLDPLSKELIYPFII-LALWGIIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI G GA+ M++HGLVSS LF Y+R H+R + GL Sbjct: 293 SHMGLVAGGILIQTPWGFSGAIILMVAHGLVSSMLFCLANTAYERTHSRTMILARGLQVI 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P AV + +AN+ LP +GE L+I ++F S +L G +++A YSL+LY Sbjct: 353 FPLTAVWWFIANLANLALPPLPNLMGELLIITTLFNWSPWTIMLTGAGTLITAAYSLYLY 412 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G + + +L RE ++ Sbjct: 413 VMSQRGPTPYHML-ELPPFHTREHLLM 438 >gi|255506348|ref|YP_003097145.1| NADH dehydrogenase subunit 4 [Tscherskia triton] gi|152031540|gb|ABS28786.1| NADH dehydrogenase subunit 4 [Tscherskia triton] Length = 459 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/395 (33%), Positives = 214/395 (54%), Gaps = 15/395 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L +LT +L P +++S I++ N + Y+ +VL+ ++I F + ++++ Sbjct: 58 TDPLSSPLTMLTIWLLPLMLIASQNHIKKDTSFNKKLYISMLVVLQILLIATFCANELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM--CWEKKTSS 193 FYI EA+LIP +II WG +ER+ A F T GSI +L A++ M Sbjct: 118 FYILLEATLIPTLIIITRWGNQTERLNAGLYFLFDTLVGSIPLLIALISMQSTLGSLNIL 177 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++ L A P + +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK Sbjct: 178 LLSLLASPLDPTWSNHILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + L P+ P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRMAVILDPMTKSMAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V I GA M++HGL SS LF Y+R+H+R + GL P A Sbjct: 297 VIAAIMIQTPWSFMGASALMIAHGLTSSLLFCLANSNYERIHSRTMIMARGLQTAFPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL-----Y 428 + + ++ N+ LP + +GE + +S+F S+ +L ++++ALYSL++ Sbjct: 357 LFWFLASLTNLALPPSINLVGELFITVSLFSWSSLSIILLGTNILITALYSLYMLITTQR 416 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463 K+ +S + Q ++L+L + P+ +LT+ Sbjct: 417 GKITTHMSSLQP-SQTRELTLM-MLHISPLVLLTI 449 >gi|170676091|ref|YP_001742114.1| NADH dehydrogenase subunit 4 [Spilogale putorius] gi|155368579|emb|CAM98594.1| NADH dehydrogenase subunit 4 [Spilogale putorius] Length = 459 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 134/380 (35%), Positives = 207/380 (54%), Gaps = 9/380 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWK--SIQENFRE--YMIAFLVLESMVIGAFLSLDMLL 136 D +S L+ LTT+L P + +S S + N R+ Y+ ++L+ ++I F + ++++ Sbjct: 58 TDSLSAPLLALTTWLLPLMLTASQSHLSKETNTRKKLYITTLVLLQLLLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS--S 193 FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ + T + Sbjct: 118 FYILFEATLIPTLIIITRWGNQTERLNAGSYFLFYTLTGSLPLLVALSYIQNNLNTLNFT 177 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 I L + S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 178 TIQLLSQPMSNSSSNMLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + L P+ + + A L L +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITVLLNPI-TNFMAYPFMMLPLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAVLIQTPWKFAGATALMIAHGLTSSMLFCLANSNYERVHSRTMILVRGLQTLLPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP T IGE VIMS F SN +L VV++ALYSL++ Sbjct: 357 AWWLLASLANLALPPTINLIGELFVIMSSFSWSNITIILMGANVVITALYSLYMLIMTQR 416 Query: 434 GVSKCEKVQQLKDLSLRERC 453 G ++ +K RE Sbjct: 417 G-KYTHHIKNIKPSFTRENT 435 >gi|108793304|ref|YP_637032.1| NADH dehydrogenase subunit 4 [Dactylopsila trivirgata] gi|94481183|dbj|BAE93989.1| NADH dehydrogenase subunit 4 [Dactylopsila trivirgata] Length = 459 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 139/400 (34%), Positives = 212/400 (53%), Gaps = 17/400 (4%) Query: 68 YHWIDYFCSYHLG--VDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVL 121 YH D +Y+ +D +S LVVL+ +L P +++S K + Y+ ++L Sbjct: 43 YHNTDLGHNYNSSFCMDSLSSPLVVLSCWLLPLMMIASQGHMTKEPTNRKKTYLTMLIIL 102 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLF 180 + +I AF S ++++FYI FE +LIP ++I WG +ER+ A F YT GS+ +L Sbjct: 103 QLSLIMAFTSSELIMFYILFETTLIPTLILITRWGNQNERLNAGLYFLFYTLVGSLPLLI 162 Query: 181 AIVVM-----CWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 A++ M T+SI S P SI +W A +F IK+P++ H WLP A Sbjct: 163 ALLHMHHNLGSLHILTNSIYSHPLDSSIPNSI---LWYACMTAFMIKMPLYGLHLWLPKA 219 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP AGS+ LA I+LK+GGYG +R + P+ + P I LS+ +I S + + Sbjct: 220 HVEAPIAGSMVLAAILLKLGGYGIMRITIFTEPITAHLHYPFIV-LSMWGMIMTSSICLR 278 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTD+K LIAYSS++HM V I GA M++HGL SS LF Y+R+H Sbjct: 279 QTDLKSLIAYSSVSHMALVIIAALMQSILSFMGATALMVAHGLTSSMLFCLANTNYERIH 338 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 +R + GL +P ++ ++AN+ LP T F+ E +VI+S F SN +L Sbjct: 339 SRTMILARGLQMILPLMCTWWLLASLANLALPPTINFLSELMVIVSSFSWSNMSIILLGT 398 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 V++ALYSL ++ G + +K RE ++ Sbjct: 399 NTVITALYSLHMFITSQRG-KLTHHLHTMKPTYTREHALM 437 >gi|83779479|gb|ABC47545.1| NADH dehydrogenase subunit 4 [Vampyressa nymphaea] Length = 459 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 181/329 (55%), Gaps = 24/329 (7%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KSYITMLIMLQIFLIMTFAATELIMFYILFEATLLPTLIIITRWGNQAERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW------------MWIAFFCS 218 T GS+ +L A+V I +L F + QYW +W+A + Sbjct: 153 TLVGSLPLLVALV---------HIQNLTGTLNFLLT-QYWTSPISTSWSTTLLWLACMMA 202 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + + A Sbjct: 203 FMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITILLEPL-TNFMAYPF 261 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL +I S + + QTD+K LIAYSS++HM V + + GA M++HGL Sbjct: 262 MMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAVLIQTPWSFMGATALMIAHGL 321 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 SS LF Y+R+H+R + GL +P A ++ ++ N+ LP T IGE + Sbjct: 322 TSSMLFCLANSNYERVHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELFI 381 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWL 427 I + F SN L ++L+ALYSL++ Sbjct: 382 ITATFSWSNLSLFLLGLNIILTALYSLYM 410 >gi|2290492|gb|AAD04707.1| NADH dehydrogenase subunit 4 [Trachypithecus phayrei] Length = 459 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 134/401 (33%), Positives = 211/401 (52%), Gaps = 17/401 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLS 131 S +L D +S L+ LT +L P I++S + + Y+ + L+ +I F+S Sbjct: 53 STYLSSDPLSTPLLTLTAWLLPLMIMASQYHLHNESPLWKKLYLSMMIFLQISLIMTFMS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +L+P +II WG +ER+ A+ F YT GS+ +L +V M + Sbjct: 113 TELILFYISFETTLVPTLIIITRWGNQAERLNASTYFLFYTLAGSLPLLIMLVFM-YNNT 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S I L ++ + W +W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 GSLNIVLLTLTAQELT-NTWSHNLIWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L PL ++Y A LSL +I S + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRLTSILNPL-TEYMAYPFLMLSLWGMIITSSTCLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 290 SVSHMALVIMASLIQTPRSFTGAIILMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + N+ LP T IGE LV+ F S+ +L ++++ALYSL Sbjct: 350 ILLPLMAFWWFAANLTNLALPPTINLIGELLVVTVSFSWSHVTIMLTGLNMLITALYSLH 409 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 ++ G+ + +K RE +++ PI +L++ Sbjct: 410 MFITTQRGM-LTPHIMNMKPSFTRENMLMFMHISPIILLSL 449 >gi|5835550|ref|NP_007571.1|ND4_13922 NADH dehydrogenase subunit 4 [Alligator mississippiensis] gi|3219524|gb|AAD09989.1| NADH dehydrogenase subunit IV [Alligator mississippiensis] gi|3367630|emb|CAA73570.1| NADH dehydrogenase subunit 4 [Alligator mississippiensis] Length = 457 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 128/364 (35%), Positives = 204/364 (56%), Gaps = 8/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV----IGAFLSLDM 134 LG D +S L++L+ +L P +++S S+ + F+ + +M+ + F++LD+ Sbjct: 56 LGSDQLSTPLMILSCWLLPLMLMASQNSMLKTPAPQNHTFITILAMLQFTLLMTFMALDL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FEA+LIP +II WG ++R+ A F YT SI ++ I+++ K T S Sbjct: 116 MLFYISFEATLIPTLIIISRWGAQADRLNAGIYFLFYTITSSIPLMIGILMIYNLKGTLS 175 Query: 194 II--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 I+ L M+ +W++ +F +KIP++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 ILTLQLTPMTGLISWTDTLLWLSILLAFLVKIPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R ++ L + + P I L+L + SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGLLRVVILLTEQINTIYPP-ILGLALWGALMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 VT I + + G+M M++HGL SS LF Y+R HTR + A G+ P Sbjct: 295 ALVTAAILTRNQLTPMGSMILMIAHGLTSSMLFCLANFSYERTHTRTLLAMQGMQLTTPT 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + +M NM LP T F+GE +I S+F S T +L ++A+Y+L+++ Sbjct: 355 LTSWWFLASMMNMALPPTINFVGELALITSLFNWSETTLLLTGLNSTITAIYTLYMFSST 414 Query: 432 VFGV 435 G Sbjct: 415 QQGT 418 >gi|2290416|gb|AAD04676.1| NADH dehydrogenase subunit 4 [Colobus guereza] Length = 459 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 138/447 (30%), Positives = 232/447 (51%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+ I+Y S +L D ++ L ++LT +L P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTLFLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FEA+LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILFYILFEATLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP A V+AP AGS+ +A ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAQVEAPIAGSMVVAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKTLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRTMMLSRGLQTLLPLMGFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M F S+ +L ++++ALYSL++Y G S + +K R Sbjct: 374 NLMGELLVVMGSFSWSHATIMLTGLNMLITALYSLYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E ++ PI +L+ + G+ P Sbjct: 433 ENMLMLMHLSPIILLSLNPNIIMGLTP 459 >gi|9828543|gb|AAG00229.1| NADH dehydrogenase subunit 4 [Ochotona pallasi sunidica] Length = 405 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 209/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QEN--FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ LVL + +I F + +++LF Sbjct: 4 DPLSTPLLILTFWLLPLMLIASQNHLSKENPPRKKLFISMLVLLQIFLIMTFSATELILF 63 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 64 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLV 123 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 124 IQILAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 182 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 183 LGGYGMMRLTLVLNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 241 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 242 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERTHSRTMILARGLQTILPLMA 301 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + +GE VI+S F SN +LA ++++ALY+L++ Sbjct: 302 AWWLLASLANLALPPSINLVGELFVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQR 361 Query: 434 G 434 G Sbjct: 362 G 362 >gi|25005994|dbj|BAC23614.1| NADH dehydrogenase subunit 4 [Synbranchus marmoratus] Length = 460 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 201/381 (52%), Gaps = 9/381 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P IL+S I + R Y+I L+ +I AF + ++++F Sbjct: 60 DPLSTPLLILTCWLLPLTILASQNHISQEPINRQRTYIILLTTLQLSLILAFSATELIMF 119 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII- 195 Y+ FE +LIP +II WG +ER+ A F YT S+ +L A++ M + S++ Sbjct: 120 YVMFETTLIPTLIIITRWGNQTERLNAGTYFLFYTLASSLPLLLALLSMHNSLGSLSLLT 179 Query: 196 -DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 L S P W+ +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 180 MQLSNPSLTPSYTNLLWWLGCNLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKL 239 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG IR ++ PLA + P I L+L II + + QTD+K LIAYSS+ HM V Sbjct: 240 GGYGLIRMMMVTGPLAKELSYPFII-LALWGIIMTGSICVRQTDLKSLIAYSSVGHMSLV 298 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I + GA+ M++HGL SSALF Y+R HTR + G+ +P + Sbjct: 299 AAAILIQTPWSIAGALILMIAHGLTSSALFCLANTNYERTHTRTMTLTRGMQVVLPLMVL 358 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 + N+ LP +GE ++I+S+F S + G +++A+YSL+++ G Sbjct: 359 WWFFICLTNLALPPLPNLMGELMIIISLFNWSFWTIIFTGLGALITAIYSLYMFLNTQRG 418 Query: 435 VSKCEKVQQLKDLSLRERCMV 455 S + L RE ++ Sbjct: 419 -SLMTHLLSLDPTHSREHLLI 438 >gi|46917231|dbj|BAD18024.1| NADH dehydrogenase subunits 4 [Leiognathus elongatus] Length = 460 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 199/364 (54%), Gaps = 10/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P +L+S + R Y+ L++++I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMLLASQHHMHPEPPTRQRIYITLLSSLQALLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++ + T S Sbjct: 117 MMFYITFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLLSSLPLLIALLTLQNTTGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L M+ F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQFTPQMTLSSFTDKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL Q P + L+L +I + + Q+D+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIMPMLEPLTKQMSYPFLL-LALWGMIMTGSICLRQSDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G GA+ M++HGL SSALF Y+R H R + GL P Sbjct: 295 MGLVVAGALLQTPWSFAGALILMIAHGLTSSALFCLANTNYERTHNRTMLLTRGLQAAFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A + T+AN+ LP +GE +VI S+F S +L G +++A YSL+++ Sbjct: 355 LMATWWFLLTLANLALPPLPNLMGELMVISSLFNWSPWTLILTGAGTLITAAYSLYMFLT 414 Query: 431 VVFG 434 G Sbjct: 415 TQRG 418 >gi|177543429|gb|ACB73137.1| NADH dehydrogenase subunit 4 [Piliocolobus badius temminckii] Length = 459 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 135/417 (32%), Positives = 220/417 (52%), Gaps = 21/417 (5%) Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----RE 113 ++S +I Y S L D ++ L++LT +L P +++S + + Sbjct: 43 NQTSNNLINY--------STLLSSDPLTTPLLMLTAWLLPLMVMASQYHLHNESPSRKKL 94 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 Y+ ++L+ +I F++ +++LFYI FE +LIP +II WG +ER+ A F YT Sbjct: 95 YLSMMVLLQISLIMTFMATELILFYILFETTLIPTLIIITRWGNQAERLNAGTYFLFYTL 154 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLY-AMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHT 230 GS+ +L +V + + +II L K + + + W+A +F +K+P++ H Sbjct: 155 TGSLPLLIMLVYIYNSLGSLNIILLTITAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHL 214 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL ++Y A LSL +I S Sbjct: 215 WLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTLILDPL-TEYMAYPFLMLSLWGMIMTS 273 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + + QTD+K LIAYSS++HM V + GA+ M++HGL SS LF Sbjct: 274 SICLRQTDLKSLIAYSSVSHMALVIVASLIQTPWSFTGAIILMIAHGLTSSMLFCLANSN 333 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R H+R + GL +P A + + N+ LP T +GE LV+ + F S+ Sbjct: 334 YERTHSRIMMLTRGLQTLLPLMAFWWLTANLTNLALPPTINLVGELLVVATSFSWSHITI 393 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 V ++++ALYSL ++ GV + +K RE +++ PI +L++ Sbjct: 394 VFMGLNMLITALYSLHMFVMTQRGV-FTHHIINMKPSFTRENMLMFMHLSPIILLSL 449 >gi|9828501|gb|AAG00208.1| NADH dehydrogenase subunit 4 [Ochotona thomasi] Length = 460 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 209/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF--REYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ LVL + +I F + ++++F Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKENLLRKKLFISMLVLLQIFLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + ++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILTT-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMVMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|62184349|ref|YP_220689.1| NADH dehydrogenase subunit 4 [Choloepus didactylus] gi|61660099|gb|AAX50173.1| NADH dehydrogenase subunit 4 [Choloepus didactylus] Length = 459 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 197/358 (55%), Gaps = 20/358 (5%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 D +S L++LTT+L P I++S + ++ + Y+ + L+ ++I F + ++++ Sbjct: 58 TDPLSTPLLILTTWLLPLMIMASQSHLHKDTTTRKKTYISMLISLQMLLITTFTATELMM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT---- 191 FYI FEA+LIP +II WG +ER+ A F YT GS+ +L VV+ + + + Sbjct: 118 FYILFEATLIPTLIIITRWGNQAERLNAGLYFLFYTLIGSLPLL---VVLTYIQNSIGSL 174 Query: 192 SSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + +I Y P + W +W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 175 NILITQYYSQPLPTT---WSSNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R L PL + P + LSL +I S + + QTD+K LIAYSS Sbjct: 232 AAILLKLGGYGMLRITTLLDPLTNSMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V + I GA M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVIVAILIQTPWSFMGASTLMIAHGLTSSLLFCLANTNYERTHSRTMMLTRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A+ ++ ++N+ LP T IGE VIM SN L + ++++YSL Sbjct: 351 LLPLMALWWLLANLSNLALPPTINLIGELFVIMPTISWSNITIALLGLNMTITSMYSL 408 >gi|31095835|gb|AAP43265.1| NADH dehydrogenase subunit 4 [Amphibolurus nobbi coggeri] Length = 456 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 127/389 (32%), Positives = 206/389 (52%), Gaps = 18/389 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ YH+ + F + +D IS L++LT +L P IL+S ++ R +++ Sbjct: 46 MLLNYHYANKF----MAMDQISAPLLILTYWLLPMMILASQNHLKHEPLIRKRTFLLNTT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L +++ A + ++LLF+I FEA+LIP ++I WG ER+ A Y YT GS+ + Sbjct: 102 TLTTLLTIALSTTNLLLFFISFEATLIPALILITRWGSQQERLTAGYYLLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPN 234 L A++VM + ++L S F + +W+A +F +K+P++ H WLP Sbjct: 162 LMALLVM---NNLTDHLNLMMFSTFKLNTTSLTNDALWLACIMAFMVKMPLYGVHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR L P Y+ P I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIRISPILQPTEKLYY-PFIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMILMMAHGLTSSMMFCLANMLYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414 ++R + GL + + N+ LP T +GE +I +++ S ++ + Sbjct: 337 NSRTLITMRGLQKTSSLMTTFWLTACLTNLALPPTINLMGELTIISALYNWSPMTFLMPA 396 Query: 415 FGVVLSALYSLWLYRKVVFGVSKCEKVQQ 443 G VL+A Y++ ++ + K Q Sbjct: 397 IGTVLTAAYTMHMFSTQRGKLPKEMMTHQ 425 >gi|12044369|gb|AAG47827.1|AF312388_3 NADH dehydrogenase subunit 4 [Cottus bairdii] Length = 413 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 202/361 (55%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 ++++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NFYVATDSLSTPLLVLTCWLLPLMILASQNHTTHEPLNRQRMYLTLLTSLQVFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEIIMFYVMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLAALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ + + S + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTIQYSNPVELSSYAHKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R ++ L PL + P+I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMVVMLEPLTKELSYPLIVF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 292 VSHMGLVVGGILIQTPWGFSGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGFQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE ++I S+F S +L G +++A YSL++ Sbjct: 352 VLPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIILTGTGTLITASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|114224021|gb|ABI54869.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 204/365 (55%), Gaps = 20/365 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL---QN 169 Query: 191 TSSIIDLYA----MSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++L A + + P S W +W+A +F +K+P++ H WLP AHV+AP A Sbjct: 170 SMGSLNLLATNLWLKEMPNS---WSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K L Sbjct: 227 GSMVLAAVLLKLGGYGMMRITMFLDPTTKSMTYPFLM-LCLWGMIMTSSICLRQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 286 IAYSSVSHMALVMVAILVQTPWSFMGATALMIAHGLTSSTLFCLANSNYERIHSRTMLMA 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++AL Sbjct: 346 RGLQTLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITIILIGLNMLITAL 405 Query: 423 YSLWL 427 YSL++ Sbjct: 406 YSLYM 410 >gi|331746989|ref|YP_004425133.1| NADH dehydrogenase subunit 4 [Rhinopithecus bieti] gi|2290452|gb|AAD08832.1| NADH dehydrogenase subunit 4 [Rhinopithecus bieti] gi|2290456|gb|AAD08835.1| NADH dehydrogenase subunit 4 [Rhinopithecus bieti] gi|297340662|gb|ADI32828.1| NADH dehydrogenase subunit 4 [Rhinopithecus bieti] Length = 459 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 133/401 (33%), Positives = 215/401 (53%), Gaps = 17/401 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S +L D ++ L++LT +L P I++S + R+ Y+ + L+ +I F++ Sbjct: 53 STYLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPLRKKLYLSMMISLQISLIMTFMA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L I+++ Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLTGSLPLL--IMLLFVHNN 170 Query: 191 TSSI-IDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ I L ++ + + W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 LGSLNIPLLTLTAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L PL ++Y A LSL +I S + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRLTSILNPL-TEYMAYPFLMLSLWGMIMTSSTCLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 290 SVSHMALVIMASLIQTPWSFTGAIVLMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + N+ LP T IGE LV+M+ F S+ +L ++++ALYSL+ Sbjct: 350 TLLPLMAFWWFAANLTNLALPPTINLIGELLVMMTSFSWSHVTIMLTGLNMLITALYSLY 409 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + +K RE +++ PI +L++ Sbjct: 410 MLVTTQRG-TLTSHIINMKPSFTRENMLMFMHMSPIILLSL 449 >gi|108755552|ref|YP_635818.1| NADH dehydrogenase subunit 4 [Lophiotoma cerithiformis] gi|82395866|gb|ABB72495.1| NADH dehydrogenase subunit 4 [Lophiotoma cerithiformis] Length = 441 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 199/362 (54%), Gaps = 10/362 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENFREYMIA--FLVLESMVIGAFLSLDMLLFY 138 D +S+LLV LT +++ +L+S S++ N YM + LVL ++I FLS LLFY Sbjct: 52 DSMSMLLVSLTLWISLMMMLASQHSVKISNNNPYMFSKFILVLNLILITTFLSSSSLLFY 111 Query: 139 IFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL 197 FEASLIP ++I WG ER+ A +YT S+ +L ++ + +S ++ + Sbjct: 112 FLFEASLIPTLMLILGWGYQPERLQAGMYMMIYTVAASLPLLLTVLWATQKLYSSEMLTI 171 Query: 198 YAMSKFPFSI-QYWMW----IAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++ +++ W W + F +F +K+PMF H WLP AHV+AP AGS+ LA ++L Sbjct: 172 SSLRLHLYTVDNTWSWNFLSMLLFTAFLVKLPMFSVHLWLPKAHVEAPVAGSMILAAVLL 231 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +RF F + ++F L++ + S++ Q D+K LIAYSSI HM Sbjct: 232 KLGGYGILRFY-QYFNFITSQMIIIMFSLAIWGGVLTSIICFRQIDLKSLIAYSSIGHMS 290 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 + G+FS G GA+ MLSHG SSALF Y++ HTR +F G++ +P Sbjct: 291 LMLAGVFSNSSWGWSGALVLMLSHGFCSSALFALANYTYEKTHTRSLFLSKGMLMLIPSL 350 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A+ +F + NM P + +GE ++ S +S+ V L+ALYS++LY Sbjct: 351 AMWWFLFCIMNMAAPPSINLLGEIMIFPSTIFSSSYYLVSLGLMSFLAALYSMYLYTSTQ 410 Query: 433 FG 434 G Sbjct: 411 HG 412 >gi|9828549|gb|AAG00232.1| NADH dehydrogenase subunit 4 [Ochotona dauurica bedfordi] Length = 404 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + ++++F Sbjct: 3 DPLSTPLLILTFWLLPLMLIASQNHLSKESLLRKKLFISMLVLLQIFLIMTFSATELIMF 62 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 63 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLV 122 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + ++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 123 IQILTT-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 181 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 182 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMVMTSSICLRQTDLKSLIAYSSVSHMAL 240 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 241 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 300 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE LVI+S F SN +LA ++++ALY+L++ Sbjct: 301 AWWLLASLANLALPPSINLIGELLVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQR 360 Query: 434 G 434 G Sbjct: 361 G 361 >gi|158605045|ref|YP_001527874.2| NADH dehydrogenase subunit 4 [Strongylocentrotus pallidus] Length = 462 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 135/399 (33%), Positives = 208/399 (52%), Gaps = 18/399 (4%) Query: 69 HWIDYFCSYH-----LGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFL 119 HW S+H L D IS L++L+ +L P +++S + R ++ + Sbjct: 45 HWTS---SWHNLSSILASDTISAPLIILSCWLAPIALIASKGHLNNTSNLGQRVFIAMII 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 ++ +I F SL++LLFYI FE +LIP ++I WG ER A F YT FGS+ + Sbjct: 102 IITGALIITFSSLELLLFYIAFETTLIPTLILITRWGAQMERFQAGLYFMFYTLFGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIID---LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L +++ + + SI + L+ + S+ W W +F IK+P++ FH WLP A Sbjct: 162 LISLIAIYVSSSSLSIPNVELLWTTNGSVESLTMW-WALSIVAFLIKMPVYGFHLWLPKA 220 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP AGS+ LA I+LK+GGYG IR + ++ Y + + + S++ + Sbjct: 221 HVEAPVAGSMILAAILLKLGGYGLIRLISLFSTISMNYLSLALIVFCTWGALITSIICIR 280 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTD+K LIAYSS+ HM V IFS G+ GA+ M++HGLVSSALF +Y+R Sbjct: 281 QTDLKALIAYSSVGHMSIVAAAIFSQTGWGMNGALMLMIAHGLVSSALFSLANTVYERSG 340 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR I GL +P + ++ AN+GLP + IGE L++ S+ S + + F Sbjct: 341 TRTIAITRGLKLLLPLSTLWWLLMCAANLGLPPSPNLIGEILILSSLISWSVWLFPIVGF 400 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 V A+YSL +++ G + S RE + Sbjct: 401 ATVFGAIYSLMIFQLSQQGTPSASIINVSSSFS-REHLL 438 >gi|219560088|gb|ACL27251.1| NADH dehydrogenase subunit 4 [Larimichthys crocea] Length = 460 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 199/363 (54%), Gaps = 14/363 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTTSEPINRQRMYITLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEMIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QNS 171 Query: 191 TSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T ++ L P F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQLSGPTMLTSFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILPMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMALARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP + E ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMAAWWFIASLANLALPPLPNLMAELMIITSLFNWSWWTLALTGTGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|158327689|emb|CAP12693.1| NADH dehydrogenase subunit 4 [Strongylocentrotus pallidus] Length = 463 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 135/399 (33%), Positives = 208/399 (52%), Gaps = 18/399 (4%) Query: 69 HWIDYFCSYH-----LGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFL 119 HW S+H L D IS L++L+ +L P +++S + R ++ + Sbjct: 46 HWTS---SWHNLSSILASDTISAPLIILSCWLAPIALIASKGHLNNTSNLGQRVFIAMII 102 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 ++ +I F SL++LLFYI FE +LIP ++I WG ER A F YT FGS+ + Sbjct: 103 IITGALIITFSSLELLLFYIAFETTLIPTLILITRWGAQMERFQAGLYFMFYTLFGSLPL 162 Query: 179 LFAIVVMCWEKKTSSIID---LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L +++ + + SI + L+ + S+ W W +F IK+P++ FH WLP A Sbjct: 163 LISLIAIYVSSSSLSIPNVELLWTTNGSVESLTMW-WALSIVAFLIKMPVYGFHLWLPKA 221 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP AGS+ LA I+LK+GGYG IR + ++ Y + + + S++ + Sbjct: 222 HVEAPVAGSMILAAILLKLGGYGLIRLISLFSTISMNYLSLALIVFCTWGALITSIICIR 281 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTD+K LIAYSS+ HM V IFS G+ GA+ M++HGLVSSALF +Y+R Sbjct: 282 QTDLKALIAYSSVGHMSIVAAAIFSQTGWGMNGALMLMIAHGLVSSALFSLANTVYERSG 341 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR I GL +P + ++ AN+GLP + IGE L++ S+ S + + F Sbjct: 342 TRTIAITRGLKLLLPLSTLWWLLMCAANLGLPPSPNLIGEILILSSLISWSVWLFPIVGF 401 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 V A+YSL +++ G + S RE + Sbjct: 402 ATVFGAIYSLMIFQLSQQGTPSASIINVSSSFS-REHLL 439 >gi|218157297|ref|YP_002364451.1| NADH dehydrogenase subunit 4 [Larimichthys crocea] gi|162946603|gb|ABY21292.1| NADH dehydrogenase subunit 4 [Larimichthys crocea] Length = 460 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 199/363 (54%), Gaps = 14/363 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTTSEPINRQRMYITLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEMIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLL--QNS 171 Query: 191 TSSIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T ++ L P F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQLSGPTMLISFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILPMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMALARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP + E ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMAAWWFIASLANLALPPLPNLMAELMIITSLFNWSWWTLALTGTGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|115531619|ref|YP_784005.1| NADH dehydrogenase subunit 4 [Neofelis nebulosa] gi|78157545|gb|ABB22889.1| NADH dehydrogenase subunit 4 [Neofelis nebulosa] Length = 459 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 211/384 (54%), Gaps = 32/384 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ L+ ++I F + ++++F Sbjct: 59 DPLSAPLLVLTTWLLPLMLMASQSHLSKETLTRKKLYITMLTTLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYI---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWAKPISTTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL ++ S V + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPTTNQMAYPFMM-LSLWGMVMTSSVCLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALY+ Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIILMGTNIIITALYT 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLS 448 L++ + + + +K+++ Sbjct: 408 LYM----LITTQRGKHTHHIKNIN 427 >gi|37496457|emb|CAD21995.1| NADH dehydrogenase subunit 4 [Elephas maximus] Length = 459 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/383 (32%), Positives = 199/383 (51%), Gaps = 15/383 (3%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L++LT +L P +++S + + Y+ ++L+ +I F + D++L Sbjct: 58 LDSLSTPLLILTIWLLPLMLIASQAHLSSGSTFQKKSYITTIILLQVSLIMTFAATDLIL 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 YI FE +LIP +II WG ER+ A F YT GS+ +L ++++ + T + Sbjct: 118 LYIMFETTLIPTMIIITRWGNQLERLNAGSYFLFYTLMGSLPLLVTLMLI---QNTLGSL 174 Query: 196 DLYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 +L + SI W +W+ +F +K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 NLMMLPYLTKSIDNLWSTNMLWLTCTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL + P + LSL ++ S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMLRITILLDPLTMHMYYPFLM-LSLWGMVMTSSICLRQTDMKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V I I GA+ M++HGL SS LF Y+R+H+R + GL +P Sbjct: 294 MALVIIAIMLQTPWSFMGALTLMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A ++ ++ NM P T GE L+I + F SN V+++ +Y+L + Sbjct: 354 LMAAWWLLASLINMAPPPTINLTGELLIITTSFSWSNLTIFPMGLNVLITTMYTLHMMTT 413 Query: 431 VVFGVSKCEKVQQLKDLSLRERC 453 G + +K RE Sbjct: 414 TQRG-KTSHHAKSIKPSFTRENT 435 >gi|83779431|gb|ABC47509.1| NADH dehydrogenase subunit 4 [Stenoderma rufum] Length = 459 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/367 (34%), Positives = 203/367 (55%), Gaps = 25/367 (6%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KSYITMLILLQIFLIMTFTATELIMFYILFEATLLPTLIIITRWGSQAERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSI---IDLYAMSKFPFSIQYW----MWIAFFCSFAIKI 223 T GS+ +L A+ + + T ++ + Y + P S W +W+A +F +K+ Sbjct: 153 TLVGSLPLLIALTYL--QNLTGTLNFLLTQYWTTLLPTS---WNTTLLWLACMMAFMVKM 207 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + + A LSL Sbjct: 208 PLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITILLDPL-TDFMAYPFMALSL 266 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 +I S + + QTD+K LIAYSS++HM V I GA M++HGL SS L Sbjct: 267 WGMIMTSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSFMGATALMIAHGLTSSML 326 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 F Y+R+H+R + GL +P A ++ ++ N+ LP T IGE +IMS+F Sbjct: 327 FCLANSNYERVHSRTMILARGLQMLLPLMAAWWLLASLTNLALPPTINLIGELFIIMSMF 386 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLS---LRERCM----VY 456 SN +L ++L+ALYSL++ + + + Q L +++ RE + + Sbjct: 387 SWSNLSIILLGLNIILTALYSLYM----LITTQRGKHTQHLNNITPSYTRENTLMTMHIL 442 Query: 457 PIAVLTV 463 P+ +LT+ Sbjct: 443 PLLLLTI 449 >gi|148910940|gb|ABR18521.1| NADH dehydrogenase subunit 4 [Takifugu obscurus] Length = 460 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 129/387 (33%), Positives = 208/387 (53%), Gaps = 11/387 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAF 129 F + +L D +S L++L+ +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYLATDPLSTPLLILSCWLLPLMILASQNHTSHEPINRQRMYITLLASLQFFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + +M++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEMIMFYVMFEATLIPTLILITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLLLQNS 171 Query: 189 KKTSSIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + S++ L + + ++ + W W +F +K+P++ WLP AHV+AP AGS+ Sbjct: 172 NGSLSLLMLPHLGQLELTSYADKIW-WAGCILAFLVKMPLYGVRLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + M QTD+K LIA Sbjct: 231 VLAAVLLKLGGYGMMRILVTLDPLTKELSYPFIV-LALWGVIMTGSICMRQTDLKSLIAC 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTSYERTHSRTMLLARGM 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S G +++A YSL Sbjct: 350 QMMLPLMAAWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTIGPTGLGTLITAGYSL 409 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRER 452 +++ G + + L+ RE Sbjct: 410 YMFLMTQRGPAP-NHLLALEPSHTREH 435 >gi|145567224|gb|ABP82000.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] Length = 459 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 195/355 (54%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKEPLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ LYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITGLYSLYM 410 >gi|189031209|gb|ACD74779.1| NADH dehydrogenase subunit 4 [Ochotona collaris] gi|189031211|gb|ACD74780.1| NADH dehydrogenase subunit 4 [Ochotona collaris] gi|189031213|gb|ACD74781.1| NADH dehydrogenase subunit 4 [Ochotona collaris] gi|189031215|gb|ACD74782.1| NADH dehydrogenase subunit 4 [Ochotona collaris] Length = 460 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + ++ F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLTRKKLFISMLVLLQIFLVMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGANMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|177543389|gb|ACB73105.1| NADH dehydrogenase subunit 4 [Piliocolobus foai] Length = 459 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 133/417 (31%), Positives = 221/417 (52%), Gaps = 21/417 (5%) Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----RE 113 ++S +I Y S L D ++ L++LT +L P I++S + + Sbjct: 43 NQTSNNLINY--------STLLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPSRKKL 94 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 Y+ ++L+ ++ F++ +++LFYI FE +LIP VII WG +ER+ A F YT Sbjct: 95 YLSMMVLLQISLVMTFMATELILFYILFETTLIPTLVIITRWGNQAERLNAGTYFLFYTL 154 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHT 230 GS+ +L +V + + +II L ++ + W+A +F +K+P++ H Sbjct: 155 AGSLPLLIMLVYIYNNLGSLNIILLTVTAQKMTATWSHSLTWLACMMAFMVKMPLYGLHL 214 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL ++Y A LSL +I S Sbjct: 215 WLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTLILDPL-TEYMAYPFLMLSLWGMIMTS 273 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + + QTD+K LIAYSS++HM V + GA+ M++HGL SS LF Sbjct: 274 SICLRQTDLKSLIAYSSVSHMALVIVASLIQTPWSFTGAIVLMIAHGLTSSMLFCLANSN 333 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R H+R + GL +P A ++ + N+ LP T +GE LV+ + F S+ Sbjct: 334 YERTHSRIMMLTRGLQTLLPLMAFWWLMANLTNLALPPTINLVGELLVVATSFSWSHITI 393 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + ++++ALYSL+++ G+ + +K RE +++ PI +L++ Sbjct: 394 MFTGLNMLITALYSLYMFIMTQRGM-FTHHIINMKPSFTRENMLMFMHLSPIILLSL 449 >gi|15055567|ref|NP_149457.1| NADH dehydrogenase subunit 4 [Ochotona collaris] gi|14599772|gb|AAK71077.1|AF348080_9 NADH dehydrogenase subunit 4 [Ochotona collaris] Length = 459 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 208/362 (57%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + ++ F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLTRKKLFISMLVLLQIFLVMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLV 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + +++ P + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 179 IQILAR-PLT-DSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 356 AAWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGANMLITALYTLYMLSTTQ 415 Query: 433 FG 434 G Sbjct: 416 RG 417 >gi|298200332|ref|YP_003667917.1| NADH dehydrogenase subunit 4 [Acanthosaura armata] gi|296840993|dbj|BAJ08239.1| NADH dehydrogenase subunit 4 [Acanthosaura armata] Length = 454 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/407 (30%), Positives = 216/407 (53%), Gaps = 18/407 (4%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVI 126 ++ F + H VD +S L++L+ +L P IL+S ++ R ++ + + ++ Sbjct: 48 LNTFSTPHTTVDSMSAPLLILSFWLLPMMILASQNHLKSETPTRKRLFLTNMVTMHLLLT 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVM 185 + ++++F+I FE++LIP ++I WG +R+ A F YT GS +L AI+ + Sbjct: 108 LTLSANNLIMFFILFESTLIPTMILITRWGSQPKRLEAGNYFMFYTLLGSFPLLIAILFI 167 Query: 186 CWEKKTSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 ++ S+++ + ++ PF+ +W A +F IK+P++ H WLP AHV+AP A Sbjct: 168 NNQETHSNLLMMSTLNPKLPDPFTSNT-IWTACMAAFLIKLPLYGLHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA I+LK+GGYG +R L + P I LS +I L + QTD+K + Sbjct: 227 GSMVLAAILLKLGGYGILRISTILTLTSDILLLPPIV-LSTWGLIMTGLTCLRQTDLKSM 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS+ HMG V + GAM M++HGL SS +F +Y+R +TR + + Sbjct: 286 IAYSSVGHMGLVIAATLIQSPWSITGAMILMIAHGLTSSMMFCLANTVYERTNTRTMISM 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ-NSNTVAVLASFGVVLSA 421 GL +MP + ++ + N+ LP T +GE ++ ++F T+ +LAS G +++A Sbjct: 346 RGLQKSMPLMTTLWLIANLTNLALPPTINLMGEITILSALFNWAPPTITLLAS-GAMITA 404 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTVF 464 YSL++ G K K RE ++ P+ +LT++ Sbjct: 405 TYSLYMLLATQQG--KLSKDTSTYPPHTREYLLLLMHLIPMGLLTLY 449 >gi|46403486|gb|AAS92768.1| NADH dehydrogenase subunit 4 [Microcebus jollyae] gi|46403491|gb|AAS92772.1| NADH dehydrogenase subunit 4 [Microcebus jollyae] gi|46403496|gb|AAS92776.1| NADH dehydrogenase subunit 4 [Microcebus jollyae] Length = 459 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 196/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 195 --IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 +++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LLMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE V+M+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVMMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|116875676|ref|YP_850985.1| NADH dehydrogenase subunit 4 [Xenoturbella bocki] gi|110169798|gb|ABG54253.1| NADH dehydrogenase subunit 4 [Xenoturbella bocki] Length = 456 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/358 (34%), Positives = 202/358 (56%), Gaps = 10/358 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV----IGAFLS 131 S+ + +D IS L++L+ +L P +L+S +++ + FL + S++ I F Sbjct: 51 SHLMSLDFISSPLMILSAWLAPLMMLASKAHMKDKTKVQKKIFLTITSLLQMTLIMTFTV 110 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 + +LF+I FE +LIP +I +G ER+ A+ F +YT GS+ +L +++++ + Sbjct: 111 NEWVLFFIMFETTLIPTLTLITKFGAQKERLIASSYFMIYTLCGSLPLLTSLMILNTKTG 170 Query: 191 TSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 TS+++ L + + W W+ F IK+P+F H WLP AHV+AP AGS+ LA Sbjct: 171 TSNMMVLTLQTDGVNMYMKNMW-WMISLTGFFIKMPLFSVHLWLPKAHVEAPVAGSMILA 229 Query: 249 GIMLKMGGYGCIRFLLPLF-PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 ++LKMGGYG +R + P+F P ++ +I L+L + S++ + QTD+K LIAYSS Sbjct: 230 AVLLKMGGYGLLR-MAPIFNPFSTLLTNKIIMALALWGTLMTSMICLRQTDLKSLIAYSS 288 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 +AHM T I +GA M++HGL SS LF IY+R HTR++ G Sbjct: 289 VAHMSMTTAAILIMTSWSWQGAYNMMIAHGLTSSLLFALANTIYERSHTRNMTITRGYKI 348 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 MP + M+ ++NM LP T F+GE ++I S+ S ++ + V++ALYSL Sbjct: 349 LMPSMYMWWMLAMLSNMSLPPTMNFLGEIMMIFSLMNWSVLTVLVTAVATVMTALYSL 406 >gi|55139564|gb|AAV41408.1| NADH dehydrogenase subunit 4 [Felis silvestris bieti] Length = 456 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ +L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETPSRKKLYITMLTLLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYI---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWAKPISTTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL ++ S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITVLLNPATNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALYS Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIILMGTNIIITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|55139560|gb|AAV41406.1| NADH dehydrogenase subunit 4 [Prionailurus bengalensis] Length = 456 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 213/384 (55%), Gaps = 32/384 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENFRE---YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + +EN Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKENLTRKKLYITMLILLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYI---QNTMGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWAKPISTTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL ++ S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITVLLNPATNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALYS Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIILMGTNIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLS 448 L++ + + + +K+++ Sbjct: 408 LYM----LITTQRGKYTHHIKNIN 427 >gi|304322935|ref|YP_003856769.1| NADH dehydrogenase subunit 4 [Lynx rufus] gi|303386860|gb|ADM15561.1| NADH dehydrogenase subunit 4 [Lynx rufus] Length = 459 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/375 (33%), Positives = 215/375 (57%), Gaps = 14/375 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETLVRKKLYITMLILLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYIQNTMGTLNFLI 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +K P SI + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQYWAK-PISITWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + L P +Q P + LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITILLNPATNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALYSL++ + Sbjct: 357 AWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIILMGTNIIITALYSLYM----LI 412 Query: 434 GVSKCEKVQQLKDLS 448 + + +K+++ Sbjct: 413 TTQRGKYTHHIKNIN 427 >gi|152942502|emb|CAL30097.1| NADH dehydrogenase subunit 4 [Xenoturbella bocki] Length = 456 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/358 (34%), Positives = 202/358 (56%), Gaps = 10/358 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV----IGAFLS 131 S+ + +D IS L++L+ +L P +L+S +++ + FL + S++ I F Sbjct: 51 SHLMSLDFISSPLMILSAWLAPLMMLASKAHMKDKTKVQKKIFLTITSLLQMTLIMTFTV 110 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 + +LF+I FE +LIP +I +G ER+ A+ F +YT GS+ +L +++++ + Sbjct: 111 NEWVLFFIMFETTLIPTLTLITKFGAQKERLIASSYFMIYTLCGSLPLLTSLMILNTKTG 170 Query: 191 TSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 TS+++ L + + W W+ F IK+P+F H WLP AHV+AP AGS+ LA Sbjct: 171 TSNMMVLTLQTDGVNMYMKNVW-WMISLTGFFIKMPLFSVHLWLPKAHVEAPVAGSMILA 229 Query: 249 GIMLKMGGYGCIRFLLPLF-PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 ++LKMGGYG +R + P+F P ++ +I L+L + S++ + QTD+K LIAYSS Sbjct: 230 AVLLKMGGYGLLR-MAPIFNPFSTLLTNKIIMALALWGTLMTSMICLRQTDLKSLIAYSS 288 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 +AHM T I +GA M++HGL SS LF IY+R HTR++ G Sbjct: 289 VAHMSMTTAAILIMTSWSWQGAYNMMIAHGLTSSLLFALANTIYERSHTRNMTITRGYKI 348 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 MP + M+ ++NM LP T F+GE ++I S+ S ++ + V++ALYSL Sbjct: 349 LMPSMYMWWMLAMLSNMSLPPTMNFLGEIMMIFSLMNWSVLTVLVTAVATVMTALYSL 406 >gi|189031205|gb|ACD74777.1| NADH dehydrogenase subunit 4 [Ochotona collaris] Length = 460 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + ++ F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLTRKKLFISMLVLLQIFLVMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGANMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|177543434|gb|ACB73141.1| NADH dehydrogenase subunit 4 [Piliocolobus badius temminckii] Length = 459 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 135/417 (32%), Positives = 221/417 (52%), Gaps = 21/417 (5%) Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FRE 113 ++S +I Y S L D ++ L++LT +L P +++S + + Sbjct: 43 NQTSNNLINY--------STLLSSDPLTTPLLMLTAWLLPLMVMASQYHLHNEGPSRKKL 94 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 Y+ ++L+ +I F++ +++LFYI FE +LIP +II WG +ER+ A F YT Sbjct: 95 YLSMMVLLQISLIMTFMATELILFYILFETTLIPTLIIITRWGNQAERLNAGTYFLFYTL 154 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLY-AMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHT 230 GS+ +L +V + + +II L K + + + W+A +F +K+P++ H Sbjct: 155 TGSLPLLIMLVYIYNSLGSLNIILLTITAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHL 214 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL ++Y A LSL +I S Sbjct: 215 WLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTLILDPL-TEYMAYPFLMLSLWGMIMTS 273 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + + QTD+K LIAYSS++HM V + GA+ M++HGL SS LF Sbjct: 274 SICLRQTDLKSLIAYSSVSHMALVIVASLIQTPWSFTGAITLMIAHGLTSSMLFCLANSN 333 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R H+R + GL +P A + + N+ LP T +GE LV+ + F S+ Sbjct: 334 YERTHSRIMMLTRGLQTLLPLMAFWWLTANLTNLALPPTINLLGELLVVATSFSWSHITI 393 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 VL ++++ALYSL ++ G+ + +K RE +++ PI +L++ Sbjct: 394 VLMGLNMLITALYSLHMFVMTQRGM-FTHHIINMKPSFTRENMLMFMHLSPIILLSL 449 >gi|38707580|ref|NP_944759.1| NADH dehydrogenase subunit 4 [Monodon monoceros] gi|38602581|emb|CAD88036.1| NADH4 protein [Monodon monoceros] Length = 459 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 205/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + Y+ + L++++I F + ++++F Sbjct: 59 DSLSAPLLMLTMWLLPLTLMASQSHLTKEPLTRKKLYITMLITLQTLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG ER+ A F YT GS+ +L A+ + + + + Sbjct: 119 YITFESTLIPTLIIITRWGNQPERLNAGLYFLFYTLMGSLPLLVALTYLQNTLGSLNFLL 178 Query: 197 L-YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L Y P S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 LQYWAQPLPIS---WSNTLMWLAYMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P+ +++ A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILSPM-TEHMAHPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVITAALIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILARGLQIFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ +AN+ LP T IGE LVI S F SN +L + ++++ALYSL++ Sbjct: 355 MTTWWLLACLANLALPPTINLIGELLVITSTFSWSNLTIILMAMNILITALYSLYMLITT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHSHHINNLTPSFTREHTLM 437 >gi|88061933|gb|ABD38943.1| NADH dehydrogenase subunit 4 [Menticirrhus littoralis] Length = 460 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 196/359 (54%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P +L+S R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMLLASQNHTALEPINRQRMYITLLTSLQIFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 VIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLTLQFSNPAQLTTFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L L PL + P I L+L +I + + QTD+K LIAYSS+ Sbjct: 235 VLLKLGGYGMMRVLPMLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAYSSVG 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLMTAWWFLASLANLALPPLPNLMGELMIITSLFSWSWWTLALTGAGTLITAGYSLYMF 412 >gi|118136407|gb|ABK62841.1| NADH dehydrogenase subunit 4 [Mystus cavasius] Length = 459 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 139/376 (36%), Positives = 204/376 (54%), Gaps = 14/376 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAF 129 + +L D +S L+VLT +L P IL+S ++ E F R ++ +L +I AF Sbjct: 52 LTNLYLSTDPLSSPLLVLTLWLMPLMILASQNHLKTETFPRQRSFLFILTLLHISLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 +L+ LLFYI FEA+LIP +II WG +ERI A F YT S+ +L IV++ + Sbjct: 112 SALNALLFYIMFEATLIPTLMIITRWGNQTERISAGTYFLFYTIISSMPLL--IVLLVAQ 169 Query: 189 KKTSS-----IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 K S I L +S FS W W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 170 KDLGSLPFPLIQQLSNLSSPTFSNNLW-WLACMMAFLVKMPLYGIHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA I+LK+GGYG IR +LPL Y A L++ II S + + Q D+K LI Sbjct: 229 SMVLAAILLKLGGYGMIR-ILPLIKPLPCYMAYPFIILAIWGIIMTSSICLCQMDLKALI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V I + + GA M++HG SSALF Y+R +R + Sbjct: 288 AYSSVSHMGLVIASILIQTQWSLTGATILMIAHGFTSSALFCLANTNYERTDSRTMLLTR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + ++ + N+ LP T + E +I S+F+ S + GV+++A Y Sbjct: 348 GLQVLLPLMSAWWLLTCLLNLALPPTINLVAELTIISSLFKWSPWTLLFTGGGVLVTAAY 407 Query: 424 SLWLYRKVVFGVSKCE 439 SL ++ G +K E Sbjct: 408 SLSMFLVTQRGPAKQE 423 >gi|83779423|gb|ABC47503.1| NADH dehydrogenase subunit 4 [Sturnira lilium] Length = 459 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/383 (32%), Positives = 207/383 (54%), Gaps = 32/383 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSTPLLMLTMWLLPLMIIASQFHLTKEPLIRKKSYITMLILLQILLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+ + + + Sbjct: 119 YILFEATLLPTLIIITRWGNQAERLNAGLYFLFYTLVGSLPLLIAL---------THLQN 169 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L F IQ+W +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 170 LTGTLNF-LLIQHWALPLSTSWNSNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL ++Y A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMLRITILLEPL-TEYMAYPFMLLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIAAVLIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T IGE V +++F S+ L +VL+ALYS Sbjct: 348 LQTLLPLMATWWLLASLTNLALPPTINLIGELFVTLAMFSWSHLSLTLLGLNIVLTALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDL 447 L++ + + + Q + ++ Sbjct: 408 LYM----LIMTQRGKHTQHINNI 426 >gi|270048327|gb|ACZ58565.1| NADH dehydrogenase subunit 4 [Necrophila americana] Length = 444 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 208/365 (56%), Gaps = 15/365 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV--IGAFLSLD 133 SY LG D +S ++++L+ ++ IL+S K +N+ + F ++ M+ AF S++ Sbjct: 48 SYFLGNDLLSYMMILLSFWICSLMILASSKLFTKNYYYNLFLFFMVLLMISLYCAFGSMN 107 Query: 134 MLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 + +FY+FFE SLIP+ V+I WG ERI A YT FGS+ ML I + + Sbjct: 108 LFIFYLFFEMSLIPVLVLIIGWGYQPERIQAGSYLLFYTLFGSLPMLICIF---YYYENY 164 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCS---FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + +D + M+K S+ M++ + C F +K+PM+ H WLP AHV+AP AGS+ LAG Sbjct: 165 NTLDFFLMNK---SMN--MFVLYICMNFVFLVKMPMYFVHLWLPKAHVEAPIAGSMILAG 219 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 +MLK+GGYG +R L+ LF + +S++ + SL+ + Q+D+K LIAYSS+A Sbjct: 220 VMLKLGGYGMMR-LMMLFLSIGMEVNYIFIMISMVGGFFVSLICLRQSDMKSLIAYSSVA 278 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI + G+ GA+ ML+HGL SS LF + Y+R+ +R I+ GL++ M Sbjct: 279 HMGLVLGGIMTLNYWGLCGALVMMLAHGLCSSGLFCLANISYERILSRSIYLNKGLINLM 338 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P + + + +NM P + +GE ++I S+ S + S SA YSL+LY Sbjct: 339 PSMTLWWFLLSSSNMAAPPSLNLLGEIMLINSLVSWSFICMFMLSLMSFFSAAYSLYLYA 398 Query: 430 KVVFG 434 G Sbjct: 399 YTQHG 403 >gi|9828515|gb|AAG00215.1| NADH dehydrogenase subunit 4 [Ochotona pallasi helanshanensis] Length = 460 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 209/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QEN--FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN ++ I+ LVL + +I F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKENPPRKKLFISMLVLLQIFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 Y+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YVLFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLI 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERTHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + +GE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINLVGELFVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|42632267|ref|NP_976135.1| NADH dehydrogenase subunit 4 [Pipistrellus abramus] gi|16416446|dbj|BAB70653.1| NADH dehydrogenase subunit 4 [Pipistrellus abramus] Length = 460 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 112/329 (34%), Positives = 185/329 (56%), Gaps = 9/329 (2%) Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYA 163 K + Y+ + L+ +I F + ++++FYI FEA+L+P ++I WGG +ER+ A Sbjct: 86 KESDSQKKLYITMMVFLQVFLIMTFSATELIMFYILFEATLVPTLIMITRWGGQTERLNA 145 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF-SIQYW----MWIAFFCS 218 F YT GS+ +L A++ + + T ++L + + + S Q W +W+A+ + Sbjct: 146 GIYFLFYTLAGSLPLLIALI---YTQTTLGSLNLLLIQYWTYPSTQMWTDSALWLAYMTA 202 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 F +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG +R + L P+ + + A Sbjct: 203 FMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMLRITMMLSPITTNFMAYPF 262 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 LSL +I S + + QTD+K LIAYSS++HM V + I GA M++HGL Sbjct: 263 LLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQSPWSFMGATALMVAHGL 322 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 SS LF Y+R H+R + GL +P A ++ ++ N+ LP + GE V Sbjct: 323 TSSMLFCLANSNYERTHSRTMILARGLQTILPLMATWWLLASLMNIALPPSINLTGELFV 382 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +++F S+ L + ++ALY+L++ Sbjct: 383 TVAMFSWSHLTMTLLGINITITALYTLYM 411 >gi|196228505|ref|ZP_03127372.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chthoniobacter flavus Ellin428] gi|196227908|gb|EDY22411.1| proton-translocating NADH-quinone oxidoreductase, chain M [Chthoniobacter flavus Ellin428] Length = 489 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 142/432 (32%), Positives = 225/432 (52%), Gaps = 24/432 (5%) Query: 37 ALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFL 95 ALG +T+ F+ +LF + ++K FQ + ++ +Y +G DG+S+++++LT + Sbjct: 26 ALGAATVQFLLTLFGFLSYNKAAGGFQFQSITPIVPEWKLNYAVGADGLSLVMLLLTGIV 85 Query: 96 TPFCILSSWKSIQENFREYM--IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 T + + W + + RE + L + + GAF S D+ FY F E +LIP F++IG Sbjct: 86 T---LAAVWVTPKIEKRENLFYACLLFISAGAAGAFASTDLFFFYSFHELALIPTFLLIG 142 Query: 154 VWGGSERIYAAYKFFLYTFFGSIFMLFAIV----VMCWEKKTSSIIDLYAMSK---FPFS 206 +WG ER AA+K +Y GSI +L +V + +T S+I+L ++ P + Sbjct: 143 LWGYGERYTAAWKITIYLGLGSIILLIGLVDLYLAVPAASRTFSLIELQRLAGNGLIPAA 202 Query: 207 IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPL 266 Q ++ F I I +FPFH+W P A+ APT ++ AG++ K G YG IR LPL Sbjct: 203 AQSRPYLFLLIGFGILISLFPFHSWAPPAYSSAPTPVAMLHAGVLKKFGLYGLIRIALPL 262 Query: 267 FPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGV 326 P ++ +A ++ L + IIY LV++ Q + L+ YSS+ HMGY+ +GI + GV Sbjct: 263 LPEGAKVWASLLLILLVGNIIYIGLVTIAQKKLDLLLGYSSVMHMGYIFLGIAALNIVGV 322 Query: 327 EGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGL 386 GA M +HGL +ALF G + R + ++GG+ + P V + A++GL Sbjct: 323 SGAALLMFAHGLSIAALFALAGFLRQRNPLLLLESFGGVAKSAPWMGFVFGLAAFASIGL 382 Query: 387 PGTSGFIGEFLVIMSVFQ--------NSNTVAVLASFGVVLSALYSLWLYRKVVFGV--- 435 PG + F E V F+ N V A +GVV+SA+Y L YR + G Sbjct: 383 PGFANFASEVNVFFGAFKPGPGLVAPNFQLATVFALWGVVISAVYMLRAYRAIFLGAPGK 442 Query: 436 SKCEKVQQLKDL 447 E V +K L Sbjct: 443 DSAEYVDPIKSL 454 >gi|145567201|gb|ABP81982.1| NADH dehydrogenase subunit 4 [Microcebus simmonsi] Length = 459 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 195/355 (54%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKEPLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A + +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LVMNMWSQDMSSLWSSNLLWLACIMALMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMVAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|55139554|gb|AAV41403.1| NADH dehydrogenase subunit 4 [Neofelis nebulosa] Length = 456 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/384 (32%), Positives = 211/384 (54%), Gaps = 32/384 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ L+ ++I F + ++++F Sbjct: 59 DPLSAPLLVLTTWLLPLMLMASQSHLSKETLTRKKLYITMLTTLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYI---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWAKPISTTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL ++ S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPTTNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALY+ Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIILMGTNIIITALYT 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLS 448 L++ + + + +K+++ Sbjct: 408 LYM----LITTQRGKHTHHIKNIN 427 >gi|156186491|gb|ABU55490.1| NADH dehydrogenase subunit 4 [Rasbora argyrotaenia] Length = 460 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 129/389 (33%), Positives = 205/389 (52%), Gaps = 13/389 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLS 131 + ++ D +S + LT +L P IL+S I N + I+ L L++ +I AF + Sbjct: 54 NTYMATDPLSTPFLTLTCWLLPLMILASQNHINPEPINRQRLYISLLASLQTFLIMAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++ Sbjct: 114 TEIIMFYVMFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLAGSLPLLVALLLL--QQT 171 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T ++ L P ++ W W +F +K+P++ H WLP A V+AP AGS+ Sbjct: 172 TGTLSMLILQYAQPLTLDSWGHKIWWAGCLNAFLVKMPLYGVHLWLPKAQVEAPVAGSMV 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA I+LK+GGYG +R ++ L + P I L+L II + + QTD+K LIAYS Sbjct: 232 LAAILLKLGGYGMMRMMIVLNAFNKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI G GA+ M++HGL SS LF Y+R+H+R + GL Sbjct: 291 SVSHMGLVAGGILIQTSWGFSGAIALMIAHGLTSSMLFCLANTTYERVHSRTMILIRGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 P A + +AN+ LP +GE +I ++F S L G +++A YSL+ Sbjct: 351 MIFPLAATWWFIANLANLALPPLPNLVGELTIITTMFNWSPWTIALTGMGTLITASYSLY 410 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 ++ G + L RE ++ Sbjct: 411 MFLMTQRG-QMPNHIMNLSPYHTREHLLM 438 >gi|333025060|ref|ZP_08453124.1| putative NADH dehydrogenase subunit NuoM2 [Streptomyces sp. Tu6071] gi|332744912|gb|EGJ75353.1| putative NADH dehydrogenase subunit NuoM2 [Streptomyces sp. Tu6071] Length = 629 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 158/420 (37%), Positives = 232/420 (55%), Gaps = 31/420 (7%) Query: 55 FDKGRSSF-QMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQEN 110 FD+ R++ Q WI Y +HLGVDGIS+ L+VLT LT C L S+ Sbjct: 112 FDRDRAAHIQASTDVSWIAAYDIRFHLGVDGISLPLLVLTALLTFLCALHSYFRPPKGGT 171 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 R ++ L+LE + AF LD++LF++ FE L+PM+ +I WGG++R AA+KF L+ Sbjct: 172 PRAFVALLLLLEGGALAAFAVLDLVLFFVAFETVLVPMYFLIARWGGAKREQAAWKFILF 231 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS ML ++++ T ++ L S S+Q +A A+K PM+P Sbjct: 232 TLVGSAVMLLGLLLIGLRAGTFDMVALATDNGSGLSKSVQVTAVLAIGLGLAVKSPMWPL 291 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H+WLP AH APTAGSV LAG++LKMG YG +R +P+ P + FAP + L+ I++ Sbjct: 292 HSWLPAAHTAAPTAGSVMLAGVLLKMGTYGFVRVAIPVAPEGMKVFAPWLAVLAAAGIVW 351 Query: 289 ASLVSM------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 SL + D+K+L+AYSS+ HMG+V +GI S G+ GA+F ++HGL++ Sbjct: 352 GSLACLQLVRRGSGGDLKRLVAYSSVGHMGFVLLGIASMTPQGLNGALFANIAHGLITGL 411 Query: 343 LFFCVGVIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 LFF VG + DR T + G L PRYAV++ +A++GLPG +GF GE L Sbjct: 412 LFFLVGGVKDRAGTSVLDRLSGSAGAALYGRAPRYAVLLAFAAVASLGLPGLAGFWGEML 471 Query: 398 VIMSVFQNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 + F ++ T +A FG +L+A Y L + R++ C L+D SL Sbjct: 472 TMYGAFDPASGLPRATYLTCMAVAGFGTLLTAAYLLLVVRRL------CMGPAPLRDNSL 525 >gi|14530824|ref|NP_127486.1| NADH dehydrogenase subunit 4 [Echinosorex gymnura] gi|14495270|gb|AAK64230.1|AF348079_9 NADH dehydrogenase subunit 4 [Echinosorex gymnura] Length = 460 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/358 (34%), Positives = 202/358 (56%), Gaps = 15/358 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLL 136 D +S L++L+T+L P +++S ++ N + Y+ ++L+ ++I F + +M++ Sbjct: 58 TDALSTPLLILSTWLLPLMLIASQNHMKLESKYNKKLYISLMILLQIILIMTFSATEMIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 F+I FEA+LIP +II WG ER+ A F YT GS+ +L A+ + + + Sbjct: 118 FFIMFEATLIPTLMIITRWGNQPERLNAGTYFLFYTLTGSLPLLVALTYL---QNYLGSL 174 Query: 196 DLYAMSKFPFSIQY--W----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + M +P S+ W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 175 NFMLMLYWPNSLNMSSWTNPLLWLACMLAFLIKMPLYGVHLWLPKAHVEAPIAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG +R ++ + P P I LSL ++ S + + QTD+K LIAYSS++ Sbjct: 235 ILLKLGGYGMMRIVIMIQPSTEMLLYPFIL-LSLWGMVMTSSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HM V I GA ML+HGL SS LF Y+R H+R + GL + Sbjct: 294 HMALVITAIMIQTPWSFMGATALMLAHGLTSSMLFCLANTNYERTHSRTMILARGLQSIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P + ++ ++AN+ LP T IGE ++I S+F SN +L ++L+++Y+L++ Sbjct: 354 PLMMLWWLMASLANLALPPTINLIGELMIITSMFSWSNMSIILLGLNMLLTSIYTLYM 411 >gi|177543449|gb|ACB73153.1| NADH dehydrogenase subunit 4 [Piliocolobus tholloni] Length = 459 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 132/417 (31%), Positives = 221/417 (52%), Gaps = 21/417 (5%) Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----RE 113 ++S +I Y S L D ++ L++LT +L P I++S + + Sbjct: 43 NQTSNNLINY--------STLLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPSRKKL 94 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 Y+ ++L+ ++ F++ +++LFYI FE +LIP +II WG +ER+ A F YT Sbjct: 95 YLSMMVLLQISLVMTFMATELILFYILFETTLIPTLIIITRWGNQAERLNAGTYFLFYTL 154 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHT 230 GS+ +L +V + + +II L ++ + W+A +F +K+P++ H Sbjct: 155 AGSLPLLIMLVYIYNNLGSLNIILLTVTAQKMTATWSHSLTWLACMMAFMVKMPLYGLHL 214 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL ++Y A LSL +I S Sbjct: 215 WLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTLILDPL-TEYMAYPFLMLSLWGMIMTS 273 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + + QTD+K LIAYSS++HM V + GA+ M++HGL SS LF Sbjct: 274 SICLRQTDLKSLIAYSSVSHMALVIVASLIQTPWSFTGAIVLMIAHGLTSSMLFCLANSN 333 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R H+R + GL +P A ++ + N+ LP T +GE LV+ + F S+ Sbjct: 334 YERTHSRIMMLTRGLQTLLPLMAFWWLMANLTNLALPPTINLVGELLVVATSFSWSHITI 393 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + ++++ALYSL+++ G+ + +K RE +++ PI +L++ Sbjct: 394 MFTGLNMLITALYSLYMFIMTQRGM-FTHHIINMKPSFTRENMLMFMHLSPIILLSL 449 >gi|156618654|gb|ABU88142.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 204/365 (55%), Gaps = 20/365 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL---QS 169 Query: 191 TSSIIDLYA----MSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++L A + + P S W +W+A +F +K+P++ H WLP AHV+AP A Sbjct: 170 SMGSLNLLATNLWLKEMPNS---WSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K L Sbjct: 227 GSMVLAAVLLKLGGYGMMRITMFLDPTTKSMTHPFLM-LCLWGMIMTSSICLRQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 286 IAYSSVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMA 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++AL Sbjct: 346 RGLQTLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITIILIGLNMLITAL 405 Query: 423 YSLWL 427 YSL++ Sbjct: 406 YSLYM 410 >gi|95104607|gb|ABF51568.1| NADH dehydrogenase subunit 4 [Colobus guereza] Length = 459 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 138/447 (30%), Positives = 234/447 (52%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + I SL F++ S+ I+Y S +L D ++ L++LT ++ P Sbjct: 25 INLTTHSLIISLIPLLFFNQTNSNL--------INY--STYLSPDPLTTPLLMLTAWILP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++L YI FEA+LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFMATELILLYILFEATLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNDLGSLNIMFLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WL AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLLKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 +++ A LSL +I S + + QTD+K LIAYSS++HM V + F GA+ Sbjct: 254 TEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASFIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMMAHGLTSSMLFCLANSNYERTHSRTMMLSRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYS+++Y G S + +K R Sbjct: 374 NLMGELLVVMASFSWSHVTIMLTGLNMLITALYSMYMYITTQRG-SLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E ++ PI +L+ + G+ P Sbjct: 433 ENMLMLMHLSPIILLSLNPNIIMGLTP 459 >gi|114223996|gb|ABI54849.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 204/365 (55%), Gaps = 20/365 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLNAGLYFLFYTLVGSLPLLLALIYL---QS 169 Query: 191 TSSIIDLYA----MSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++L A + + P S W +W+A +F +K+P++ H WLP AHV+AP A Sbjct: 170 SMGSLNLLATNLWLKEMPNS---WSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K L Sbjct: 227 GSMVLAAVLLKLGGYGMMRITMFLDPTTKSMTYPFLM-LCLWGMIMTSSICLRQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 286 IAYSSVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMA 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++AL Sbjct: 346 RGLQTLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITIILIGLNMLMTAL 405 Query: 423 YSLWL 427 YSL++ Sbjct: 406 YSLYM 410 >gi|38707544|ref|NP_944746.1| NADH dehydrogenase subunit 4 [Lagenorhynchus albirostris] gi|38602567|emb|CAD88023.1| NADH4 protein [Lagenorhynchus albirostris] Length = 459 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/384 (34%), Positives = 204/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S K + Y+ ++L+ ++I F + ++ +F Sbjct: 59 DPLSAPLLMLTMWLLPLMLMASQFHLLKEPLTRKKLYITMLIILQILLIMTFTATELTMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YITFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALMYL---QNTVGSLN 175 Query: 197 LYAMSKF--PFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + + P S + +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 FLLLQYWAQPLSTSWSNTFMWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL P + LSL +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRITSILNPLTEDMAYPFLV-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA M++HGL SS LF Y+R+H+R + GL P Sbjct: 295 ALVIAAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQIFFPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + N+ LP T IGE LVIMS F SN +L +V++ALYSL++ Sbjct: 355 MTTWWLLACLTNLALPPTINLIGELLVIMSTFSWSNLTIILMGVNIVITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPTFTREHALM 437 >gi|94985028|ref|YP_604392.1| proton-translocating NADH-quinone oxidoreductase, chain M [Deinococcus geothermalis DSM 11300] gi|94555309|gb|ABF45223.1| NADH dehydrogenase subunit M [Deinococcus geothermalis DSM 11300] Length = 474 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 130/412 (31%), Positives = 235/412 (57%), Gaps = 19/412 (4%) Query: 69 HWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 +W+ +Y + + G+S+ L ++T +T +L + + + N + L +E+ +IG Sbjct: 54 NWVPALGITYSVALTGVSLALALVTALMTFIAVLYAARRV-SNPGTLLSLVLAMETGLIG 112 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + D++LFY+FFE +L+P +++ ++GG R+ A KF YT FGS+ ML +I+ + + Sbjct: 113 IFAARDLVLFYVFFEDALLPALLMLAIYGGPNRMRALVKFAAYTLFGSLLMLLSIIGVRY 172 Query: 188 --EKKTSSIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T +++DL + P Q W+++ F + A+K+P++P H WLP+ H Q +G Sbjct: 173 YGGSPTFALVDLV---QHPVQGVTQTWLYLGFLAAMAVKLPLWPLHAWLPDFHEQNHASG 229 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 + G + K+GGYG +F LPLFP AS PV+ L+ +YA+ ++ QT+ K+LI Sbjct: 230 VPDVMGTLYKVGGYGLFQFGLPLFPDASLELRPVLMGLAAFTALYAAWIAFRQTNWKRLI 289 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR---LHTRDIF 360 AY+ ++HMG+V +G+FS ++ GAM+ + + + ALF VG++ +R +HTR Sbjct: 290 AYAGLSHMGFVALGVFSLNETATIGAMYLLAFQNVYTGALFLAVGMLQERVGSVHTR--- 346 Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420 GG++ + + +A++ +PG +GFIGEF V++ +Q +A +A + + Sbjct: 347 -VGGVMTQAGALGGLTLTLWLASIAVPGLAGFIGEFSVLLGAYQVQPWLAFVAGLSSIAA 405 Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV-YPIAVLTVFFGIYPVP 471 A Y+L + + F + ++ DL E ++ P+AV+ +FFG+Y P Sbjct: 406 AAYALTAF-QTTFWQGRPWGAVRVADLRHTEWLVLGLPLAVV-LFFGVYSAP 455 >gi|114224026|gb|ABI54873.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224031|gb|ABI54877.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 204/365 (55%), Gaps = 20/365 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL---QN 169 Query: 191 TSSIIDLYA----MSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++L A + + P S W +W+A +F +K+P++ H WLP AHV+AP A Sbjct: 170 SMGSLNLLATNLWLKEMPNS---WSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K L Sbjct: 227 GSMVLAAVLLKLGGYGMMRITMFLDPTTKSMTYPFLM-LCLWGMIMTSSICLRQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 286 IAYSSVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMA 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++AL Sbjct: 346 RGLQTLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITIILIGLNMLITAL 405 Query: 423 YSLWL 427 YSL++ Sbjct: 406 YSLYM 410 >gi|115494561|ref|YP_778938.1| NADH dehydrogenase subunit 4 [Vulpes vulpes] gi|115345119|emb|CAJ57153.1| NADH dehydrogenase subunit 4 [Vulpes vulpes] Length = 459 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 130/390 (33%), Positives = 204/390 (52%), Gaps = 31/390 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LTT+L P +++S + + + Y+ ++L+ +I F + +++LF Sbjct: 59 DSLSAPLLALTTWLLPLMLMASQSHLSKEPLIRKKLYISMLILLQLFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F Y GS+ +L A++ + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYNLTGSLPLLVALLYIQ---------- 168 Query: 197 LYAMSKFPF-SIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 +M F IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 169 -NSMGSLNFLMIQYWIQPLPSSWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L PL P + LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITTLLNPLTDLMVYPFML-LSLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALY Sbjct: 347 GLQTLLPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNITIILMGMNIIITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 +L++ G ++ +K RE Sbjct: 407 TLYMLITTQRG-KHTHHIKNIKPSFTRENA 435 >gi|829028|gb|AAD15023.1| unknown protein [Rattus norvegicus] Length = 459 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 136/395 (34%), Positives = 214/395 (54%), Gaps = 17/395 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S ++ EN + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMMLASQNHMKKENMMHQKLYISMLISLQILLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLI 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L +++ P W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 179 L-SLTTHPLP-STWSNTILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L PL P I LSL +I S V + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRVSIILDPLTKSLAYPFII-LSLWGMIMTSSVCLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 296 LVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFSLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP +GE ++M+ F SN +L + +V + +YS+++ Sbjct: 356 ATWWLLASLANLALPPLINLMGELFIVMATFSWSNPSIILMATNIVTTGMYSMYMIITTQ 415 Query: 433 FGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G + L+ RE + + P+ +LT+ Sbjct: 416 RG-KLTSHMNNLQPSHTRELTLMALHIIPLMLLTI 449 >gi|46403561|gb|AAS92828.1| NADH dehydrogenase subunit 4 [Microcebus griseorufus] gi|46403566|gb|AAS92832.1| NADH dehydrogenase subunit 4 [Microcebus griseorufus] gi|46403571|gb|AAS92836.1| NADH dehydrogenase subunit 4 [Microcebus griseorufus] Length = 459 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/356 (33%), Positives = 200/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSS-WKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + ++E+ + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMVMASQYHLMKESLTRKKLYLSMLTSLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALI---YVQNTLGSLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 M+ + ++ W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 YLVMNMWTQNMSNSWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P P + + L ++ S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRLTIILNPTTKIMSYPFMM-MCLWGMVMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 295 ALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VIM+ F SN ++ ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPFINLIGELFVIMASFSWSNITIIMTGLNMLITALYSLYM 410 >gi|156618640|gb|ABU88131.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 204/365 (55%), Gaps = 20/365 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL---QS 169 Query: 191 TSSIIDLYA----MSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++L A + + P S W +W+A +F +K+P++ H WLP AHV+AP A Sbjct: 170 SMGSLNLLATNLWLKEMPNS---WSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K L Sbjct: 227 GSMVLAAVLLKLGGYGMMRITMFLDPTTKSMTYPFLM-LCLWGMIMTSSICLRQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 286 IAYSSVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMA 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++AL Sbjct: 346 RGLQTLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITIILIGLNMLMTAL 405 Query: 423 YSLWL 427 YSL++ Sbjct: 406 YSLYM 410 >gi|226453431|ref|YP_002791025.1| NADH dehydrogenase subunit 4 [Rattus rattus] gi|160688827|gb|ABX45241.1| NADH dehydrogenase subunit 4 [Rattus rattus] gi|209361444|gb|ACI43357.1| NADH dehydrogenase subunit 4 [Rattus rattus] Length = 459 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 132/393 (33%), Positives = 212/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +L+S +++ + + Y+ + L+ ++I F + +++LF Sbjct: 59 DPLSTPLIILTTWLLPLMMLASQNHMKKENPMHQKLYISMLISLQILLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLV 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + L P +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LSLTTQPLPPTWSNNILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L PL P I LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRVSMILDPLTKSLAYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I GA M++HGL SS LF Y+R+H+R + GL P A Sbjct: 298 ITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP +GE ++M+ F S+ L + +V++ +YS+++ G Sbjct: 358 WWLLASLANLALPPLINLMGELFIVMATFSWSSPSITLMATNIVITGMYSMYMIITTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + L+ RE + + P+ +LT+ Sbjct: 418 -KLTSHMNNLQPSHTRELTLMALHIIPLMLLTI 449 >gi|52221006|ref|YP_086863.1| NADH dehydrogenase subunit 4 [Diplometopon zarudnyi] gi|47026694|gb|AAT08512.1| NADH dehydrogenase subunit 4 [Diplometopon zarudnyi] Length = 456 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 124/396 (31%), Positives = 211/396 (53%), Gaps = 18/396 (4%) Query: 70 WIDYFCSYHLG-------VDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAF 118 W+ + S H+ +D IS L+VL+ +L P L+S + + + N R ++I Sbjct: 41 WLHHPLSLHMTCLTPITYLDTISTPLLVLSCWLLPLMALASQQHMHQEPKINQRMFLITI 100 Query: 119 LVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIF 177 +L+ ++ F + + ++FYI FE ++IP ++I WG ER+ A F YT S+ Sbjct: 101 TILQCSLLLTFSASEFIMFYIMFETTIIPTLMLITRWGSQQERLAAGTYFLFYTLISSLP 160 Query: 178 MLFAIVVMCWEKKTSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +L A+V E S+I + + F + +W A +F +K+P++ H WLP A Sbjct: 161 LLMALVFFYTEYSHMSLIIMKILPQTTFTWGTSELLWSAGMLAFLVKLPLYGVHLWLPKA 220 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP AGS+ LA I+LK+GGYG IR ++P+ P S P++ +I+ A+++ + Sbjct: 221 HVEAPIAGSMVLAAILLKLGGYGMIR-IMPIIPEHSTLSLPLLALALWGSIM-ANIICLR 278 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTD+K LIAYSS+ HM V + + + G+ GA+ M++HGL SS F Y+R + Sbjct: 279 QTDLKSLIAYSSVGHMALVILALMTKTAWGLTGALTLMIAHGLTSSMTFCLANTTYERTN 338 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR + GL +P ++ ++ NM +P + IGE +I +++ S + + Sbjct: 339 TRTLLLATGLQLILPLMTTWWLLASLTNMAMPPSINLIGELSIITTLYHWSPMTVLPLTI 398 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 +L+A Y+L+++ G K K++ L RE Sbjct: 399 NTLLTATYTLYMFITTQRG--KPMKMKTLHPAHTRE 432 >gi|2290440|gb|AAD08823.1| NADH dehydrogenase subunit 4 [Rhinopithecus bieti] Length = 459 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 133/401 (33%), Positives = 215/401 (53%), Gaps = 17/401 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S +L D ++ L++LT +L P I++S + R+ Y+ + L+ +I F++ Sbjct: 53 STYLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPLRKKLYLSMMISLQISLIMTFMA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L I+++ Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLTGSLPLL--IMLLFVHNN 170 Query: 191 TSSI-IDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ I L ++ + + W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 LGSLNIPLLTLTAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L PL ++Y A LSL +I S + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRLTSILNPL-TEYMAYPSLMLSLWGMIMTSSTCLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 290 SVSHMALVIMASLIQTPWSFTGAIVLMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + N+ LP T IGE LV+M+ F S+ +L ++++ALYSL+ Sbjct: 350 TLLPLMAFWWFAANLTNLALPPTINLIGELLVMMTSFSWSHVTIMLTGLNMLITALYSLY 409 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + +K RE +++ PI +L++ Sbjct: 410 MLVTTQRG-TLTSHIINMKPSFTRENMLMFMHMSPIILLSL 449 >gi|325652621|gb|ADZ37121.1| NADH dehydrogenase subunit 4 [Procolobus verus] Length = 459 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 135/414 (32%), Positives = 220/414 (53%), Gaps = 19/414 (4%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVI 126 I+Y S +L D ++ L++LT +L P ++S + + Y+ + L+ +I Sbjct: 50 INY--SNYLSSDPLTTPLLMLTAWLLPLMTMASQYHLHNESPSXKKLYLSMMIFLQISLI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM 185 F++ +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L +V + Sbjct: 108 MTFMATELILFYILFETTLIPTLIIITRWGSQAERLNAGTYFLFYTLAGSLPLLIMLVYI 167 Query: 186 CWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + +II L M++ + W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 168 YNSLGSLNIILLTLMAQKLTTTWAHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L L PL ++Y A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRLTLILDPL-TEYMAYPFLMLSLWGMIMTSSICLRQTDLKALI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + GA+ M++HGL SS LF Y+R H+R + Sbjct: 287 AYSSVSHMALVIVASLIKTPWSFTGAIVLMIAHGLTSSMLFCLANSNYERTHSRIMMLSR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A + + N+ LP T +GE LV+ + F S+ +L ++++ALY Sbjct: 347 GLQALLPLMAFWWFMANLTNLALPPTINLMGELLVVTTSFSWSHITIMLMGLNMLITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT----VFFGIYP 469 SL ++ G+ + +K RE +++ PI +L+ + G+ P Sbjct: 407 SLHMFISTQRGM-LTHHIISMKPSFTRENMLMFMHLSPIILLSLNPNIIMGLTP 459 >gi|225554160|gb|EEH02525.1| NADH dehydrogenase subunit 4 [Ajellomyces capsulatus G186AR] Length = 305 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 128/284 (45%), Positives = 187/284 (65%), Gaps = 9/284 (3%) Query: 52 WSVFDKGRSSFQMI--EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE 109 + +FD FQ I + ++ I+YF Y LGVDGISI V+LTT +TP ++S+WKSI E Sbjct: 21 YILFDFSSKQFQFIQVQEHYQINYFDIY-LGVDGISIYFVLLTTIITPIALISNWKSIDE 79 Query: 110 -NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFF 168 N ++I L+LE++++G FL LD+LLFYIFFE+ L P+F++IG++G S ++ A++ F Sbjct: 80 KNVLSFVIIILLLEALLLGVFLVLDLLLFYIFFESILPPLFLLIGLFGSSNKVRASFYLF 139 Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK--FPFSIQYWMWIAFFCSFAIKIPMF 226 LYT GS+FML +I+ M T+ D A+SK F + Q +++ F SFA+K P Sbjct: 140 LYTLLGSLFMLLSIITMSSIMGTT---DFDALSKANFNYITQLFLFYGIFISFAVKTPTI 196 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 +TWL AHV++P AGS+ LAGI+LK+ YG R +LPL P AS + +I+ + +I I Sbjct: 197 FLNTWLLKAHVESPLAGSILLAGIVLKLSLYGIFRLILPLLPKASINYTYIIYVIGVITI 256 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 IYAS ++ DIK+LIAYSS++H +G FS G+EGA+ Sbjct: 257 IYASFSTLRTIDIKELIAYSSVSHAAVYLLGAFSNSIQGIEGAI 300 >gi|55139548|gb|AAV41400.1| NADH dehydrogenase subunit 4 [Uncia uncia] Length = 456 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 205/370 (55%), Gaps = 28/370 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETPSRKKLYITMLIILQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYI---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LVIQYWAKPISATWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL ++ S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPTTNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+++ F SN VL ++++ALY+ Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIGELFVVVASFSWSNMTIVLMGTNIIITALYT 407 Query: 425 LWLYRKVVFG 434 L++ G Sbjct: 408 LYMLTTTQRG 417 >gi|14587626|gb|AAK70606.1|AF224638_4 NADH dehydrogenase subunit 4 [Microcebus rufus] Length = 459 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 195/355 (54%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTSLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--- 193 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYV--QNSLGSLNY 176 Query: 194 -IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++++++ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 MVMNMWSQDMSSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRLTMILSPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQAFLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP IGE VI + F SN ++ ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVITASFSWSNLTIIMTGLNMLITALYSLYM 410 >gi|177543459|gb|ACB73161.1| NADH dehydrogenase subunit 4 [Procolobus verus] Length = 459 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 135/414 (32%), Positives = 220/414 (53%), Gaps = 19/414 (4%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVI 126 I+Y S +L D ++ L++LT +L P ++S + + Y+ + L+ +I Sbjct: 50 INY--SNYLSSDPLTTPLLMLTAWLLPLMTMASQYHLHNESPSRKKLYLSMMIFLQISLI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM 185 F++ +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L +V + Sbjct: 108 MTFMATELILFYILFETTLIPTLIIITRWGSQAERLNAGTYFLFYTLAGSLPLLIMLVYI 167 Query: 186 CWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + +II L M++ + W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 168 YNSLGSLNIILLTLMAQKLTTTWAHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L L PL ++Y A LSL +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRLTLILDPL-TEYMAYPFLMLSLWGMIMTSSICLRQTDLKALI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + GA+ M++HGL SS LF Y+R H+R + Sbjct: 287 AYSSVSHMALVIVASLIKTPWSFTGAIVLMIAHGLTSSMLFCLANSNYERTHSRIMMLSR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A + + N+ LP T +GE LV+ + F S+ +L ++++ALY Sbjct: 347 GLQALLPLMAFWWFMANLTNLALPPTINLMGELLVVTTSFSWSHITIMLMGLNMLITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT----VFFGIYP 469 SL ++ G+ + +K RE +++ PI +L+ + G+ P Sbjct: 407 SLHMFISTQRGM-LTHHIISMKPSFTRENMLMFMHLSPIILLSLNPNIIMGLTP 459 >gi|114223991|gb|ABI54845.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224001|gb|ABI54853.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224006|gb|ABI54857.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224016|gb|ABI54865.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224036|gb|ABI54881.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 204/365 (55%), Gaps = 20/365 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLNAGLYFLFYTLVGSLPLLLALIYL---QS 169 Query: 191 TSSIIDLYA----MSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++L A + + P S W +W+A +F +K+P++ H WLP AHV+AP A Sbjct: 170 SMGSLNLLATNLWLKEMPNS---WSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K L Sbjct: 227 GSMVLAAVLLKLGGYGMMRITMFLDPTTKSMTYPFLM-LCLWGMIMTSSICLRQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 286 IAYSSVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMA 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++AL Sbjct: 346 RGLQTLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITIILIGLNMLITAL 405 Query: 423 YSLWL 427 YSL++ Sbjct: 406 YSLYM 410 >gi|114224061|gb|ABI54901.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224066|gb|ABI54905.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224071|gb|ABI54909.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224076|gb|ABI54913.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224081|gb|ABI54917.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224086|gb|ABI54921.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224091|gb|ABI54925.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224096|gb|ABI54929.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224101|gb|ABI54933.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224106|gb|ABI54937.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 206/375 (54%), Gaps = 22/375 (5%) Query: 68 YHWIDYFCSYHLG--VDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVL 121 YH D ++ L D +S L++LT +L P I++S + + FR+ Y+ + L Sbjct: 43 YHPSDSNNNFSLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITL 102 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLF 180 + +I F + +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L Sbjct: 103 QMFLITTFTATELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLL 162 Query: 181 AIVVMCWEKKTSSIIDLYA----MSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWL 232 A+ + + + ++L A + + P S W +W+A +F +K+P++ H WL Sbjct: 163 ALTYL---QSSMGSLNLLATNLWLKEMPNS---WSTNLLWLACIMAFMVKMPLYGLHLWL 216 Query: 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 P AHV+AP AGS+ LA ++LK+GGYG +R + L P P + L L +I S + Sbjct: 217 PKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMFLDPTTKSMAYPFLM-LCLWGMIMTSSI 275 Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD 352 + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Y+ Sbjct: 276 CLRQTDLKSLIAYSSVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYE 335 Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVL 412 R+H+R + GL +P A ++ ++ N+ LP + IGE LV ++ F SN +L Sbjct: 336 RIHSRTMLMARGLQTLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITVIL 395 Query: 413 ASFGVVLSALYSLWL 427 ++ +ALYSL++ Sbjct: 396 IGLNMLTTALYSLYM 410 >gi|195661152|ref|YP_002117889.1| NADH dehydrogenase subunit 4 [Epinephelus akaara] gi|153973793|gb|ABS54458.1| NADH dehydrogenase subunit 4 [Epinephelus akaara] Length = 460 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/364 (34%), Positives = 201/364 (55%), Gaps = 22/364 (6%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHTATEPINRQRMYISLLTSLQIFLILAFGATEV 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + + Sbjct: 117 IMFYVMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLL---QNYTG 173 Query: 194 IIDLYAMSKFPFS---------IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + L+ + PFS + W W +F +K+P++ H WLP AHV+AP AGS Sbjct: 174 TLSLFTL---PFSHPLHLSSNADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R ++ L PL + P + F +L +I + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMMRMIIMLDPLTKELSYPFLVF-ALWGVIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++AN+ LP +GE ++I S+F S VL G +++A YS Sbjct: 349 LQIILPLMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIVLTGGGTLITASYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|156186476|gb|ABU55483.1| NADH dehydrogenase subunit 4 [Rasbora caudimaculata] Length = 460 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 203/388 (52%), Gaps = 15/388 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S + LT +L P IL+S I R Y+ L++ +I AF + + Sbjct: 56 YMATDPLSTPFLTLTCWLLPLMILASQNHINPEPISRQRLYISLLTSLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++++ ++T+ Sbjct: 116 IIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLLL---QQTT 172 Query: 193 SIIDLYAMS-KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + ++ + PF++ W W +F +K+P++ H WLP A V+AP AGS+ L Sbjct: 173 GTLSMFILQYAQPFALDTWGHKIWWAGCLIAFLVKMPLYGVHLWLPKAQVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R ++ L + P I L+L II + QTD+K LIAYSS Sbjct: 233 AAILLKLGGYGMMRMMIVLDAFNKELAYPFII-LALWGIIMTGSTCLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SS LF Y+R+H+R + GL Sbjct: 292 VSHMGLVAGGILIQTPWGFSGAIALMIAHGLTSSMLFCLANTTYERVHSRTMILIRGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 P + +AN+ LP +GE +I ++F S L G +++A YSL++ Sbjct: 352 IFPLATTWWFIANLANLALPPLPNLVGELTIITTMFNWSPWTMALTGMGTLITASYSLYM 411 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMV 455 + G + L RE ++ Sbjct: 412 FLMTQRG-QMPNHISSLSPYHTREHLLM 438 >gi|264681166|ref|YP_003289011.1| NADH dehydrogenase subunit 4 [Causus defilippi] gi|262073509|gb|ACY09604.1| NADH dehydrogenase subunit 4 [Causus defilippi] Length = 445 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 203/386 (52%), Gaps = 17/386 (4%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDM 134 L +D IS L+ L+ +L P ++S K + R ++I ++L+ + F+ + Sbjct: 50 LNLDNISSPLLSLSFWLLPLMTIASQHTMSKEPTQRQRVFLITLILLQLFISLTFMVYSL 109 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L YI FEA+LIP ++I WG +ER+ A F LYT S+ +L AI+ + T + Sbjct: 110 TLMYIMFEATLIPTLILITRWGQQAERLTAGTYFILYTLTTSMPLLLAIMFINNLTFTPT 169 Query: 194 IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + +SK S +W +W+A +F K+P++ H WLP AHV+AP AGS+ LA Sbjct: 170 L-----LSKTINSQNHWVPLLLWLASLTAFLAKMPVYGLHLWLPKAHVEAPIAGSMVLAA 224 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG IR + L + F P I LSL + A+L + QTD+K LIAYSSI+ Sbjct: 225 ILLKLGGYGMIRIIQILPTSKTDMFIPFIT-LSLWGAVLANLTCLQQTDLKSLIAYSSIS 283 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V I + + GAM M++HG SSALF Y+R HTR + G + + Sbjct: 284 HMGLVVASILIQTQWSLSGAMALMIAHGFTSSALFCLANTTYERTHTRIMTLTRGFHNIL 343 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P ++ + N+ P F EFL++ S+F + +L S ++ +++YSL ++ Sbjct: 344 PMSTTWWLLSNLMNIATPPMMNFTSEFLILSSLFNWCPSTIILLSLSILTTSIYSLHIFL 403 Query: 430 KVVFGVSKCEKVQQLKDLSLRERCMV 455 G + Q + RE ++ Sbjct: 404 STQMGPTLLNT--QTEPTHSREHLLM 427 >gi|189031203|gb|ACD74776.1| NADH dehydrogenase subunit 4 [Ochotona collaris] Length = 460 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 208/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + ++ F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLTRKKLFISMLVLLQIFLVMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILAR-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINSIGELFVIISSFSWSNLTIILAGANMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|197935793|ref|YP_002213562.1| NADH dehydrogenase subunit 4 [Halichoeres tenuispinis] gi|154818362|gb|ABS87654.1| NADH dehydrogenase subunit 4 [Halichoeres tenuispinis] Length = 459 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 128/357 (35%), Positives = 198/357 (55%), Gaps = 10/357 (2%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDML 135 GVD +S L+VL+ +L P I++S + R Y+ + L+ +I AF + +++ Sbjct: 58 GVDPLSSPLLVLSCWLLPLMIIASQNHMASEPLHRQRLYISLMIGLQCFLILAFSATEVI 117 Query: 136 LFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 LFYI FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ + S+ Sbjct: 118 LFYIMFEATLIPTLFLITRWGNQTERLSAGTYFLFYTLAGSLPLLVALLLLQNSTGSLSM 177 Query: 195 IDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 + L+ S + + +W W A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 178 LTLHYIQPTSDYNWGNSFW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAVL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L+ L PL P I L+L +I + + QTD+K LIAYSS+ HM Sbjct: 237 LKLGGYGMMRILVVLTPLTKDLAYPFIV-LALWGVIMTGSICLRQTDLKSLIAYSSVGHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V GI GA+ M++HGL SS LF Y+R HTR + GL +P Sbjct: 296 GLVVAGILVQTSWSFTGALILMIAHGLTSSCLFCLANTNYERTHTRTMALARGLQTALPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + T+AN+ LP + E VI+ +++ S L G +++A YSL+++ Sbjct: 356 MTAWWFIATIANLALPPLPNLMAELSVIVGLWKWSWWTIFLTGGGTLITAGYSLYMF 412 >gi|12484224|gb|AAG54012.1|AF224598_4 NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224041|gb|ABI54885.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224046|gb|ABI54889.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224056|gb|ABI54897.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 204/365 (55%), Gaps = 20/365 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL---QS 169 Query: 191 TSSIIDLYA----MSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++L A + + P S W +W+A +F +K+P++ H WLP AHV+AP A Sbjct: 170 SMGSLNLLATNLWLKEMPNS---WSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K L Sbjct: 227 GSMVLAAVLLKLGGYGMMRITMFLDPTTKSMTYPFLM-LCLWGMIMTSSICLRQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 286 IAYSSVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMA 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++AL Sbjct: 346 RGLQTLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITIILIGLNMLITAL 405 Query: 423 YSLWL 427 YSL++ Sbjct: 406 YSLYM 410 >gi|223976102|ref|YP_002600799.1| NADH dehydrogenase subunit 4 [Capricornis crispus] gi|207559948|gb|ACI24545.1| NADH dehydrogenase subunit 4 [Capricornis crispus] gi|223972383|dbj|BAH23415.1| NADH dehydrogenase subunit 4 [Capricornis crispus] Length = 459 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 193/353 (54%), Gaps = 12/353 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG----AFLSLDMLLF 137 D +S L++LT +L P +++S + + F+ + ++ F + +++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKESLARKKLFISMLILLQLLLIMTFTATELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 Y+ FEA+LIP +II WG ++R+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YVLFEATLIPTLIIITRWGNQADRLNAGLYFLFYTLAGSLPLLVALIHI--QNTIGSLNF 176 Query: 195 -IDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 I Y + P S +MW+A +F +K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 177 LILQYWVQPMPNSWSNTFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ P I LSL +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMLRITLLLNPVTDFMSYPFIM-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 A ++ ++ N+ LP T +GE V+MS F SN +L + ++ALYSL Sbjct: 356 AAWWLLASLTNLALPPTINLVGELFVMMSTFSWSNITIILMGLNMTITALYSL 408 >gi|50812140|ref|YP_054526.1| NADH dehydrogenase subunit 4 [Triops longicaudatus] gi|50059205|gb|AAT69275.1| NADH dehydrogenase subunit 4 [Triops longicaudatus] Length = 448 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 150/422 (35%), Positives = 226/422 (53%), Gaps = 19/422 (4%) Query: 40 ISTINFIFSLFV--WSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGI-----SILLVVLT 92 IST+ I S+FV W +F S M+ + W S L + + S +LV L Sbjct: 6 ISTLCLIPSVFVMNWFMFSL---SVLMVMMFWWTQINFSLDLNFEALDSNFASYILVTLL 62 Query: 93 TFLTPFCILSSWK-SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 +LT ++SS+ S N +++ +L + FL D LLFYI FE SLIP F++ Sbjct: 63 FWLTFLMVISSYSLSKTSNNGIFLMLLFLLLLFLEVTFLISDFLLFYIMFECSLIPTFLL 122 Query: 152 IGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW 210 I WG ERI AA YT S+ +L I + W+ T +++ ++ + F I + Sbjct: 123 IMGWGYQPERIRAALYLLFYTLAASLPLLVCIFFLGWKLGT---LNMSYLTFYMFPISSF 179 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 M+I +F +K+PM+ FH WLP AHV+AP AGS+ LAGI+LK+GGYG +R L+ F L Sbjct: 180 MFIFLITAFLVKMPMYFFHLWLPKAHVEAPIAGSMILAGILLKLGGYGLMRILI--FDLN 237 Query: 271 SQY-FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 Y P++ +SL+ + SL+ ++Q+DIK LIAYSS+AHM V G+FSG G GA Sbjct: 238 MVYELGPLVISISLVGAVITSLICLIQSDIKALIAYSSVAHMALVIGGLFSGYMWGWNGA 297 Query: 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGT 389 + M++HGL SS LF + Y+R ++R + GL++ P + + + +M P + Sbjct: 298 LIMMIAHGLASSGLFCLANISYERTNSRSLVLNRGLMNLYPTITIWWFLISAVSMAAPPS 357 Query: 390 SGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 +GEF +I S+ S +L L+A Y+L+LY G +S+ Sbjct: 358 LNLLGEFSLINSLVGWSVWSMILLGLISFLAAGYTLYLYSSTQHGTPTVSLTAS-YPVSV 416 Query: 450 RE 451 RE Sbjct: 417 RE 418 >gi|289183087|ref|YP_003457079.1| NADH dehydrogenase subunit 4 [Bufoceratias thele] gi|288908907|dbj|BAI77153.1| NADH dehydrogenase subunit 4 [Bufoceratias thele] Length = 460 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 202/361 (55%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQSHMTPEPLNRQRMYITLLTSLQLFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP ++I WG ++R+ A F YT GS+ +L A++++ + T Sbjct: 116 IIMFYIMFEATLIPTLILITRWGNQTQRLNAGTYFLFYTLAGSLPLLVALLLL--QNTTG 173 Query: 193 SIIDLYAMSKFP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 ++ L P ++ + W W A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQYSNPALLTTYADKLW-WTACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L+ L PL + P I F +L ++ + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRMLVILEPLTKELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G+ Sbjct: 292 VSHMGLVVGGILIQTPWGFSGALILMVAHGLTSSALFCLANTNYERTHSRTMILARGMQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP +GE +++ S+F S L G +++A YSL++ Sbjct: 352 VLPLMTSWWFIASLANLALPPLPNLMGELMILTSLFNWSYWTIALTGAGTLITAAYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|47588011|gb|AAT35896.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|47588040|gb|AAT35900.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925806|gb|ABS32127.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925811|gb|ABS32131.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/361 (34%), Positives = 199/361 (55%), Gaps = 12/361 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P +++S + + FR+ Y+ + L++ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMVMASQNHLAKEPWFRKKSYLSLLITLQTFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGMYFLFYTLVGSLPLLLALIYL--QSS 170 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ L W +W+A +F IK+P++ H WLP AHV+AP AGS+ Sbjct: 171 MGSLNLLTTNLWLKEMPNSWSTNLLWLACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRITMFLDPTTKSMTCPFLM-LCLWGMIMTSSICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 290 SVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A ++ ++ N+ LP + IGE +V ++ F SN +L ++++ALYSL+ Sbjct: 350 TLLPLMATWWLLASLTNLALPPSINLIGELIVTITSFSWSNITVILIGLNMLITALYSLY 409 Query: 427 L 427 + Sbjct: 410 M 410 >gi|115494743|ref|YP_778873.1| NADH dehydrogenase subunit 4 [Phoca groenlandica] gi|37620620|gb|AAQ95119.1| NADH dehydrogenase subunit 4 [Phoca groenlandica] gi|115345021|emb|CAJ57062.1| NADH dehydrogenase subunit 4 [Phoca groenlandica] Length = 459 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 117/320 (36%), Positives = 184/320 (57%), Gaps = 6/320 (1%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLVLLQLFLIMTFTATELIMFYILFEATLVPTLIIITRWGNQTERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS--IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFP 227 T GS+ +L A++ + T + +I L+A P S +W+A +F +K+P++ Sbjct: 153 TLAGSLPLLVALLFIQNNMGTLNFLMIQLWA-QPLPNSWSNTLLWLACMMAFMVKMPLYG 211 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S + A LSL +I Sbjct: 212 LHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITVLLSPLTS-FMAYPFMMLSLWGMI 270 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 S + + QTD+K LIAYSS++HM V + + GA M++HGL SS LF Sbjct: 271 MTSSICLRQTDLKSLIAYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLA 330 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 Y+R H+R + GL +P A ++ ++ N+ LP T IGE V+M+ F SN Sbjct: 331 NSNYERTHSRTMILARGLQVLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSWSN 390 Query: 408 TVAVLASFGVVLSALYSLWL 427 +L ++++ALYSL++ Sbjct: 391 ITIILMGTNIIITALYSLYM 410 >gi|114224171|gb|ABI54989.1| NADH dehydrogenase subunit 4 [Avahi unicolor] Length = 459 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 205/359 (57%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + FR+ Y+ + L++ +I F++ +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQYHLAKEPWFRKKSYLSMLITLQTFLIMTFMATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYL--QNSMGSLNL 176 Query: 195 --IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 I+L+ + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ A Sbjct: 177 LTINLW-LKELPNS---WSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVHA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITMILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I G GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL++ Sbjct: 352 LPLTATWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLYM 410 >gi|114223966|gb|ABI54825.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114223971|gb|ABI54829.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114223976|gb|ABI54833.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114223981|gb|ABI54837.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114223986|gb|ABI54841.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|148533528|gb|ABQ84963.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|148533533|gb|ABQ84967.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|148533538|gb|ABQ84971.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|148533543|gb|ABQ84975.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|148533548|gb|ABQ84979.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 199/361 (55%), Gaps = 12/361 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P +++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMVMASQSHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL--QSS 170 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ L W +W+A +F IK+P++ H WLP AHV+AP AGS+ Sbjct: 171 MGSLNLLTTNLWLKDMPNSWSTNLLWLACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRITMFLDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + I GA M++HGL SS LF Y+R+H+R +F GL Sbjct: 290 SVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMFMARGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL+ Sbjct: 350 TLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLY 409 Query: 427 L 427 + Sbjct: 410 M 410 >gi|5835215|ref|NP_008260.1|ND4_10685 NADH dehydrogenase subunit 4 [Felis catus] gi|1352568|sp|P48916|NU4M_FELCA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|1098533|gb|AAC48578.1| NADH dehydrogenase subunit 4 [Felis catus] gi|1589124|prf||2210305K NADH dehydrogenase:SUBUNIT=4 Length = 459 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 203/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ +L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETPSRKKLYITMLTLLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLIPTLIIITRWGDQTERLNAGLYFLFYTLVGSLPLLVALLYI---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWAKPISTTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL ++ S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITVLLNPATNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALYS Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIILMGTNIIITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|14587535|gb|AAK70554.1|AF224625_4 NADH dehydrogenase subunit 4 [Microcebus murinus] gi|14587542|gb|AAK70558.1|AF224626_4 NADH dehydrogenase subunit 4 [Microcebus murinus] gi|14587549|gb|AAK70562.1|AF224627_4 NADH dehydrogenase subunit 4 [Microcebus murinus] Length = 459 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 130/392 (33%), Positives = 202/392 (51%), Gaps = 31/392 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + Y+ + L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLMKESMTRKKLYLSMLISLQMFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAI-------------V 183 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A+ V Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALIYVQISLGSLNYLV 178 Query: 184 VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + W + SS P+S +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 179 MNIWFQDMSS----------PWSSNL-LWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L P+ P I L L +I S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMLRLTIILNPMTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++ N+ LP IGE VIM+ F S+ + ++++ALY Sbjct: 347 GLQAFLPLMATWWLLASLTNLALPPFINLIGELFVIMASFSWSSVTIAMTGLNMLITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 SL++ G + +K RE ++ Sbjct: 407 SLYMLTMTQRG-KFTYHIHNIKPSYTRENTLM 437 >gi|2290448|gb|AAD08829.1| NADH dehydrogenase subunit 4 [Rhinopithecus bieti] Length = 459 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 132/401 (32%), Positives = 213/401 (53%), Gaps = 17/401 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S +L D ++ L++LT +L P I++S + R+ Y+ + L+ +I F++ Sbjct: 53 STYLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPLRKKLYLSMMISLQISLIMTFMA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L I+++ Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLTGSLPLL--IMLLFVHNN 170 Query: 191 TSSI-IDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ I L ++ + + W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 LGSLNIPLLTLTAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L PL ++Y A LSL +I S + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRLTSILNPL-TEYMAYPFLMLSLWGMIMTSSTCLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 290 SVSHMALVIMASLIQTPWSFTGAIVLMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + N+ LP T IGE LV+M+ F S+ +L ++++ALYSL+ Sbjct: 350 TLLPLMAFWWFAANLTNLALPPTINLIGELLVMMTSFSWSHVTIMLTGLNMLITALYSLY 409 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + RE +++ PI +L++ Sbjct: 410 MLVTTQRGTLTSHIINMNPSFT-RENMLMFMHMSPIILLSL 449 >gi|224588028|ref|YP_002640558.1| NADH dehydrogenase subunit 4 [Martes flavigula] gi|223951389|gb|ACN29644.1| NADH dehydrogenase subunit 4 [Martes flavigula] Length = 458 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 120/361 (33%), Positives = 189/361 (52%), Gaps = 26/361 (7%) Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYA 163 K + Y+ + L+ ++I F + ++++FYI FEA+L+P +II WG +ER+ A Sbjct: 86 KETLTRKKLYITMLVTLQLLLIMTFTATELIMFYILFEATLMPTLIIITRWGNQTERLNA 145 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW------------M 211 F YT GS+ +L A++ W + ++L +QYW + Sbjct: 146 GLYFLFYTLVGSLPLLTALL---WMQNNLGTLNL-------LVLQYWAQPLSSSWSNTLL 195 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S Sbjct: 196 WLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLNPLTS 255 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 P + LSL +I S + + QTD+K LIAYS AHM V + + GA Sbjct: 256 SMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIAYS-WAHMALVIVAVLIQSPWSYMGATA 313 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 M++HGL SS LF Y+R+H+R + GL +P A ++ ++ N+ LP T Sbjct: 314 LMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQMLLPLMAAWWLLASLTNLALPPTIN 373 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 +GE V+M+ F SN +L + ++ALYSL++ G ++ +K RE Sbjct: 374 LVGELFVVMASFSWSNITIILMGINITITALYSLYMLITTQRG-KYTHHIKNIKPSFTRE 432 Query: 452 R 452 Sbjct: 433 N 433 >gi|318077266|ref|ZP_07984598.1| putative NADH dehydrogenase chain M [Streptomyces sp. SA3_actF] Length = 586 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 158/420 (37%), Positives = 232/420 (55%), Gaps = 31/420 (7%) Query: 55 FDKGRSS-FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQEN 110 FD+ +++ Q WI Y +HLGVDGIS+ L+VLT LT C L S+ Sbjct: 112 FDRDQAAHIQASTDVSWIAAYDIRFHLGVDGISLPLLVLTALLTFLCALHSYFRPPKGGT 171 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 R ++ L+LE + AF LD++LF++ FE LIPM+ +I WGG++R AA+KF L+ Sbjct: 172 PRAFVALLLLLEGGALAAFAVLDLVLFFVAFETVLIPMYFLIACWGGAKREEAAWKFILF 231 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS ML ++++ T ++ L S S+Q +A A+K PM+P Sbjct: 232 TLVGSAVMLLGLLLIGLRAGTFDMVALATDNGSDLSKSVQVTAVLAIGLGLAVKSPMWPL 291 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H+WLP AH APTAGSV LAG++LKMG YG +R +P+ P + FAP + L+ I++ Sbjct: 292 HSWLPAAHTAAPTAGSVMLAGVLLKMGTYGFVRVAIPVAPEGMKVFAPWLAVLAAAGILW 351 Query: 289 ASLVSM------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 SL + D+K+L+AYSS+ HMG+V +GI S G+ GA+F ++HGL++ Sbjct: 352 GSLACLQLVRRGSGGDLKRLVAYSSVGHMGFVLLGIASMTPQGLNGALFANIAHGLITGL 411 Query: 343 LFFCVGVIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 LFF VG + DR T + G L PRYAV++ +A++GLPG +GF GE L Sbjct: 412 LFFLVGGVKDRAGTSVLDRLSGSAGAALYGRAPRYAVLLAFAAVASLGLPGLAGFWGEML 471 Query: 398 VIMSVFQNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 + F ++ T +A FG +L+A Y L + R++ C L+D SL Sbjct: 472 TMYGAFDPASGLPRATYLTCMAVAGFGTLLTAAYLLLVVRRL------CMGPAPLRDNSL 525 >gi|318056643|ref|ZP_07975366.1| putative NADH dehydrogenase chain M [Streptomyces sp. SA3_actG] Length = 629 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 158/420 (37%), Positives = 232/420 (55%), Gaps = 31/420 (7%) Query: 55 FDKGRSS-FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQEN 110 FD+ +++ Q WI Y +HLGVDGIS+ L+VLT LT C L S+ Sbjct: 112 FDRDQAAHIQASTDVSWIAAYDIRFHLGVDGISLPLLVLTALLTFLCALHSYFRPPKGGT 171 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 R ++ L+LE + AF LD++LF++ FE LIPM+ +I WGG++R AA+KF L+ Sbjct: 172 PRAFVALLLLLEGGALAAFAVLDLVLFFVAFETVLIPMYFLIACWGGAKREEAAWKFILF 231 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS ML ++++ T ++ L S S+Q +A A+K PM+P Sbjct: 232 TLVGSAVMLLGLLLIGLRAGTFDMVALATDNGSDLSKSVQVTAVLAIGLGLAVKSPMWPL 291 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H+WLP AH APTAGSV LAG++LKMG YG +R +P+ P + FAP + L+ I++ Sbjct: 292 HSWLPAAHTAAPTAGSVMLAGVLLKMGTYGFVRVAIPVAPEGMKVFAPWLAVLAAAGILW 351 Query: 289 ASLVSM------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 SL + D+K+L+AYSS+ HMG+V +GI S G+ GA+F ++HGL++ Sbjct: 352 GSLACLQLVRRGSGGDLKRLVAYSSVGHMGFVLLGIASMTPQGLNGALFANIAHGLITGL 411 Query: 343 LFFCVGVIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 LFF VG + DR T + G L PRYAV++ +A++GLPG +GF GE L Sbjct: 412 LFFLVGGVKDRAGTSVLDRLSGSAGAALYGRAPRYAVLLAFAAVASLGLPGLAGFWGEML 471 Query: 398 VIMSVFQNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 + F ++ T +A FG +L+A Y L + R++ C L+D SL Sbjct: 472 TMYGAFDPASGLPRATYLTCMAVAGFGTLLTAAYLLLVVRRL------CMGPAPLRDNSL 525 >gi|269812065|gb|ACZ44380.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K S RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSSTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|114224111|gb|ABI54941.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224116|gb|ABI54945.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224121|gb|ABI54949.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224126|gb|ABI54953.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224131|gb|ABI54957.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224136|gb|ABI54961.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224141|gb|ABI54965.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224146|gb|ABI54969.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224151|gb|ABI54973.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114224156|gb|ABI54977.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|156618609|gb|ABU88106.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|156618615|gb|ABU88111.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|156618620|gb|ABU88115.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|156618624|gb|ABU88118.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|156618630|gb|ABU88123.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|156618635|gb|ABU88127.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|156618660|gb|ABU88147.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 204/365 (55%), Gaps = 20/365 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL---QS 169 Query: 191 TSSIIDLYA----MSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++L A + + P S W +W+A +F +K+P++ H WLP AHV+AP A Sbjct: 170 SMGSLNLLATNLWLKEMPNS---WSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K L Sbjct: 227 GSMVLAAVLLKLGGYGMMRITMFLDPTTKSMTYPFLM-LCLWGMIMTSSICLRQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 286 IAYSSVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMA 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++AL Sbjct: 346 RGLQTLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITIILIGLNMLITAL 405 Query: 423 YSLWL 427 YSL++ Sbjct: 406 YSLYM 410 >gi|187250358|ref|YP_001874849.1| NADH dehydrogenase subunit 4 [Panthera pardus] gi|145558779|gb|ABP73305.1| NADH dehydrogenase subunit 4 [Panthera pardus] Length = 458 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 205/370 (55%), Gaps = 28/370 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETPSRKKLYITMLIILQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYI---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LVIQYWAKPISATWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL ++ S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPTTNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+++ F SN VL ++++ALY+ Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIGELFVVVASFSWSNMTIVLMGTNIIITALYT 407 Query: 425 LWLYRKVVFG 434 L++ G Sbjct: 408 LYMLTTTQRG 417 >gi|172045612|sp|A8DQK9|NU4M_AVACL RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|114224186|gb|ABI55001.1| NADH dehydrogenase subunit 4 [Avahi cleesei] gi|114224191|gb|ABI55005.1| NADH dehydrogenase subunit 4 [Avahi cleesei] gi|114224196|gb|ABI55009.1| NADH dehydrogenase subunit 4 [Avahi cleesei] gi|114224201|gb|ABI55013.1| NADH dehydrogenase subunit 4 [Avahi cleesei] Length = 459 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 204/359 (56%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F++ +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSMLITLQMFLIMTFMATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYL--QSSMGSLNL 176 Query: 195 --IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 I+L+ + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 LTINLW-LKELPNS---WSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITIILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I G GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL++ Sbjct: 352 LPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLYM 410 >gi|114223876|gb|ABI54753.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114223886|gb|ABI54761.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/361 (34%), Positives = 199/361 (55%), Gaps = 12/361 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P +++S + + FR+ Y+ + L++ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMVMASQNHLAKEPWFRKKSYLSLLITLQTFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGMYFLFYTLVGSLPLLLALIYL--QSS 170 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ L W +W+A +F IK+P++ H WLP AHV+AP AGS+ Sbjct: 171 MGSLNLLTTNLWLKEMPNSWSTNLLWLACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRITMFLDPTTKSMTCPFLM-LCLWGMIMTSSICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 290 SVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A ++ ++ N+ LP + IGE +V ++ F SN +L ++++ALYSL+ Sbjct: 350 TLLPLMATWWLLASLTNLALPPSINLIGELIVTITSFSWSNITVILIGLNMLITALYSLY 409 Query: 427 L 427 + Sbjct: 410 M 410 >gi|301353444|ref|YP_003795667.1| NADH dehydrogenase subunit 4 [Collichthys lucidus] gi|300069588|gb|ADJ66692.1| NADH dehydrogenase subunit 4 [Collichthys lucidus] Length = 460 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 196/361 (54%), Gaps = 10/361 (2%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 NLYMATDPLSTPLLVLTCWLLPLMILASQNHTTTEPINRQRMYITLLTSLQIFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +M++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 114 TEMIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLLLQNSTG 173 Query: 191 TSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 T S++ L F+ + W W +F ++P++ H WLP AHV+AP AGS+ L Sbjct: 174 TLSLLTLQFSGPTILTSFADKLW-WAGCLLAFPSQMPLYGVHLWLPKAHVEAPIAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAYSS Sbjct: 233 AAVLLKLGGYGMMRILPMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 + HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 292 VGHMGLVVGGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMALARGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P + ++AN+ LP + E ++I S+F S L G +++A YSL++ Sbjct: 352 ALPLMTTWWFIASLANLALPPLPNLMAELMIITSLFNWSWWTLALTGTGTLITAGYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|224588094|ref|YP_002640619.1| NADH dehydrogenase subunit 4 [Viridovipera stejnegeri stejnegeri] gi|224037284|gb|ACN37855.1| NADH dehydrogenase subunit 4 [Viridovipera stejnegeri stejnegeri] Length = 445 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 128/399 (32%), Positives = 206/399 (51%), Gaps = 23/399 (5%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDM 134 L +D IS L+ L+ +L P ++S K + R ++ +L+ + F++ ++ Sbjct: 50 LNLDTISAPLLSLSYWLLPLMTIASQYTMTKEPMQRQRTFLATLTLLQLFISMTFMASNL 109 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L YI FEA+LIP +II WG +ER+ A F LYT S+ +L A + + T + Sbjct: 110 TLMYIMFEATLIPTLIIITRWGQQTERLTAGTYFMLYTLTTSLPLLMATIFINNSTNTPT 169 Query: 194 -IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + L+ + + W +W+A +F K+P++ H WLP AHV+AP AGS+ LA Sbjct: 170 PFLQLF------YPLNQWTSLLLWMACLTAFLAKMPIYGLHLWLPKAHVEAPIAGSMVLA 223 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG IR + L + F P I L+L I A+L + QTD+K LIAYSS+ Sbjct: 224 AILLKLGGYGIIRMMQILPTTKTDMFLPFIV-LALWGAILANLTCLQQTDLKSLIAYSSV 282 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V I G+ GAM M++HG SSALF Y+R HTR + G + Sbjct: 283 SHMGLVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGFHNI 342 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P ++ + N+ P T F E L++ ++F T ++ ++++A YSL ++ Sbjct: 343 LPMATTWWLLTNLMNIATPPTMNFTSELLIMSALFNWCPTTIIMLGLSMLITASYSLHMF 402 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 G Q + RE + + P+A++++ Sbjct: 403 LSTQMGYPLLNS--QTEPTHTREHLLMILHIIPLAMISM 439 >gi|114224181|gb|ABI54997.1| NADH dehydrogenase subunit 4 [Avahi cleesei] Length = 459 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 204/359 (56%), Gaps = 20/359 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F++ +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSMLITLQMFLIMTFMATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYL--QSSMGSLNL 176 Query: 195 --IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 I+L+ + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 177 LTINLW-LKELPNS---WSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRITIILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I G GA M++HGL SS LF Y+R+H+R + GL Sbjct: 292 SHMALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL++ Sbjct: 352 LPLMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLYM 410 >gi|38349485|ref|NP_941387.1| NADH dehydrogenase subunit 4 [Acinonyx jubatus] gi|38304376|gb|AAQ14961.1|AF344830_10 NADH dehydrogenase subunit 4 [Acinonyx jubatus] gi|38373508|gb|AAR19076.1| NADH dehydrogenase subunit 4 [Acinonyx jubatus] Length = 459 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 212/384 (55%), Gaps = 32/384 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S K I + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKEILARKKLYITMLILLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYI---QNTMGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWAKPISTTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P SQ P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPTTSQMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T +GE V+++ F SN +L ++++ALYS Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLVGELFVVVASFSWSNMTIILMGTNIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLS 448 L++ + + + +K+++ Sbjct: 408 LYM----LITTQRGKYTHHIKNIN 427 >gi|37620602|gb|AAQ95110.1| NADH dehydrogenase subunit 4 [Ommatophoca rossii] gi|269302349|gb|ACZ29024.1| NADH dehydrogenase subunit 4 [Ommatophoca rossii] Length = 459 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 191/346 (55%), Gaps = 7/346 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFTATELIMFYILFEATLVPTLIIITRWGNQTERLNAGMYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS--IIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFP 227 T GS+ +L A++ + T + ++ L+A P S +W+A +F +K+P++ Sbjct: 153 TLVGSLPLLVALLFIQNNMGTLNFLMLQLWA-QPMPNSWSNTLLWLACMMAFMVKMPLYG 211 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + P + LSL +I Sbjct: 212 LHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRVTILLNPLTNSMAYPFMM-LSLWGMI 270 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 S + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 271 MTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSMLFCLA 330 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 Y+R H+R + GL +P A ++ ++ N+ LP T IGE V+M+ F S+ Sbjct: 331 NSNYERTHSRTMILARGLQMLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSWSS 390 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 +L ++++ALYSL++ G ++ +K RE Sbjct: 391 ITIILMGTNIIITALYSLYMLITTQRG-KYTHHIKNIKPSFTRENA 435 >gi|237869094|ref|YP_002907422.1| NADH dehydrogenase subunit 4 [Anyperodon leucogrammicus] gi|237653087|gb|ACR09343.1| NADH dehydrogenase subunit 4 [Anyperodon leucogrammicus] Length = 460 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 198/365 (54%), Gaps = 10/365 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHTAAEPINRQRMYISLLTSLQFFLILAFSATEL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+LIP ++I WG ER+ A F YT GS+ +L A++++ T S Sbjct: 117 IMFYVMFEATLIPTLILITRWGNQKERLNAGVYFLFYTLAGSLPLLVALLLLQNHTGTLS 176 Query: 194 IIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L S ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLPFSSPLHLSSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R ++ L PL P + F +L ++ + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMMVMLDPLTKSLSFPFLAF-ALWGVVMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVVGGILIQTPWGFSGALILMIAHGLTSSALFCLANTNYERTHSRTMILVRGLQMILP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + ++AN+ LP +GE ++I S+F S L G +++A YSL ++ Sbjct: 355 LMTAWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTIALTGAGTLITASYSLHMFLM 414 Query: 431 VVFGV 435 G+ Sbjct: 415 TQRGI 419 >gi|46917240|dbj|BAD18030.1| NADH dehydrogenase subunits 4 [Leiognathus rivulatus] Length = 460 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 127/364 (34%), Positives = 199/364 (54%), Gaps = 10/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P +L+S + R Y+ L++++I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMLLASQHHMSPEPLIRQRAYITLLSSLQALLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++ + T S Sbjct: 117 MMFYITFEATLIPTLIIITRWGNQAERLNAGIYFLFYTLLSSLPLLVALLTLQNTTGTLS 176 Query: 194 IIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L M+ F+ + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQFNPQMTLSSFTDKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL Q P + L+L ++ + + Q+D+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIMPMLEPLTKQLSYPFLL-LALWGMVMTGSICLRQSDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G GA+ M++HGL SSALF Y+R H R + GL P Sbjct: 295 MGLVVAGALLQTPWSFSGALILMIAHGLTSSALFCLANTNYERTHNRTMLLTRGLQTAFP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A + ++AN+ LP +GE +VI S+F S +L G +++A YSL+++ Sbjct: 355 LMATWWFLLSLANLALPPLPNLMGELMVISSLFNWSPWTLILTGAGTLITAAYSLYMFLT 414 Query: 431 VVFG 434 G Sbjct: 415 TQRG 418 >gi|32469203|dbj|BAC78896.1| NADH dehydrogenase subunit 4 [Echinops telfairi] Length = 459 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 128/356 (35%), Positives = 199/356 (55%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ---ENFREYMIAFL-VLESMVIGAFLSLDMLLF 137 D +S L++LT++L P +L+S + E ++Y I L VL+ + F + +M+LF Sbjct: 59 DPLSTPLIILTSWLLPLMLLASQSHMSKESETRKKYYITMLIVLQLFLFLTFSATEMMLF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L ++ + T +++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGVYFLFYTLMGSLPLLIVLIYIYNNLGTLNLLI 178 Query: 197 L-YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L Y + PF W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 179 LPYYIMPLPF---LWSSKLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ P + LSL ++ S + + Q D+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITIFLDPITLNMSYPFLM-LSLWGMLMTSSICLRQADLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGASTLMIAHGLTSSMLFTLANTNYERTHSRTMILARGLQTMLPV 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE L+I S F SN +L ++L+A Y+L++ Sbjct: 355 MASWWILASLTNLALPPTINLIGELLIISSSFSWSNITMLLMGLNMLLTASYTLYM 410 >gi|55139558|gb|AAV41405.1| NADH dehydrogenase subunit 4 [Otocolobus manul] Length = 456 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 127/385 (32%), Positives = 212/385 (55%), Gaps = 32/385 (8%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLL 136 +D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++ Sbjct: 58 LDPLSAPLLVLTTWLLPLMLMASQSHLSKETLTRKKLYITMLILLQLLLIMTFTATELIM 117 Query: 137 FYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII 195 FYI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T + Sbjct: 118 FYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYI---QNTMGTL 174 Query: 196 DLYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + IQYW +W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 175 NF-------LIIQYWAKPISTTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R + L P + Y A LSL ++ S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMMRITVLLNP-TTNYMAYPFMMLSLWGMVMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + + GA M++HGL SS LF Y+R+H+R + Sbjct: 287 AYSSVSHMALVIVAVLIQTPWSYTGATALMIAHGLTSSMLFCLANSNYERVHSRTMILAR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P A ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALY Sbjct: 347 GLQTILPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIILMGMNIIITALY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLS 448 SL++ + + + +K+++ Sbjct: 407 SLYM----LITTQRGKYTHHIKNIN 427 >gi|44843557|emb|CAE48112.2| NADH deydrogenase subunit 4 [Bufo melanostictus] Length = 455 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 131/372 (35%), Positives = 206/372 (55%), Gaps = 22/372 (5%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVI 126 ++ F S + +D +S L+VLT +LT +L+S + + R Y+ ++L+ + Sbjct: 47 VNPFLSSYFFIDEVSSPLLVLTCWLTAPTLLASQSKLSKEPLPRQRTYIFTIIMLQITTL 106 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVM 185 AFL+ +M+LF+I FEA++IP ++I WG ER+ A YT FGS+ +L A M Sbjct: 107 LAFLADNMILFFIMFEATMIPTLIVITRWGAQKERMLAGTYLIFYTLFGSMALLTA---M 163 Query: 186 CWEKKTSSIIDLYAMSKF-----PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240 + +T + + M F S W A +F +K+P++ H WLP AHV+AP Sbjct: 164 LYFHETFGTMSISLMKSFFINNTLTSCSLAWWAACLIAFLVKMPLYGVHLWLPKAHVEAP 223 Query: 241 TAGSVFLAGIMLKMGGYGCIRFLL----PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 AGS+ LAG +LK+GGYG +R + PLA AP+I F SL ++ ++++ Q Sbjct: 224 IAGSMILAGTLLKLGGYGILRINIFINDSFLPLA----APLIVF-SLFGVLLSAILVSRQ 278 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K LIA+SS++HMG V + + G+M M+SHGLVSSALF Y+R +T Sbjct: 279 TDLKSLIAFSSVSHMGLVIAASVMKTEWSIAGSMILMVSHGLVSSALFCLANTSYERTNT 338 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R + G P A ++ + N+ LP + FIGE ++ S+FQ SN V+ G Sbjct: 339 RTLILLQGTQIIFPLTAAWWLLAALMNLALPPSPNFIGELSILTSLFQWSNLTLVMTGLG 398 Query: 417 VVLSALYSLWLY 428 ++ + YSL+++ Sbjct: 399 IIFTTAYSLYMF 410 >gi|153581722|emb|CAO79652.1| NADH dehydrogenase 4 [Hippoglossus hippoglossus] Length = 461 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 119/321 (37%), Positives = 183/321 (57%), Gaps = 6/321 (1%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 R Y+ L+ +I AF + ++++FY+ FEA+LIP +II WG +ER+ A F Y Sbjct: 94 RMYITLLASLQFFLILAFSATELVMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFY 153 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFP 227 T GS+ +L A++++ T S++ L+ S + W W +F +K+P++ Sbjct: 154 TLAGSLPLLVALLLLQNTSGTLSLLTLHYTDPLALSSYADKLW-WAGCLLAFLVKMPLYG 212 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 H WLP AHV+AP AGS+ LA ++LK+GGYG IR + L PL + P I F +L +I Sbjct: 213 VHLWLPKAHVEAPIAGSMILAAVLLKLGGYGMIRMMTMLEPLTKELSYPFIVF-ALWGVI 271 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 + + QTD+K LIAYSS++HMG V GI G+ GA+ M++HGL SSALF Sbjct: 272 MTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQSPWGLTGALTLMIAHGLTSSALFCLA 331 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 Y+R H+R + GL +P A + ++AN+ LP +GE ++I S+F S Sbjct: 332 NTNYERTHSRTMVLARGLQVALPLMATWWFISSLANLALPPLPNLMGELMIITSLFNWSW 391 Query: 408 TVAVLASFGVVLSALYSLWLY 428 L G +++A YSL+++ Sbjct: 392 WTLALTGAGTLITAGYSLYMF 412 >gi|108742876|gb|ABG02045.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 129/393 (32%), Positives = 210/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +S+ S+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MIMLSQNLPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+ + GL +P A Sbjct: 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSGTMLLARGLQTFLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP +GE VIM+ F SN ++ V+++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPFINLVGELFVIMTSFSWSNLTIIMTGLNVLITALYSLYMLTMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +LT+ Sbjct: 418 -KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|332886954|dbj|BAK23065.1| NADH dehydrogenase subunit 4 [Horadandia atukorali] Length = 460 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 200/361 (55%), Gaps = 14/361 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 ++ D +S +VLT +L P IL+S I N + I+ L L++ +I AF + + Sbjct: 56 YMATDPLSAPFLVLTCWLLPLMILASQNHINPEPINRQRLYISLLASLQTFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 IIMFYIMFEATLIPTLIVITRWGNQAERLNAGIYFLFYTLAGSLPLLIALLLLQHSTGTL 175 Query: 193 SIIDL-YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S+ L YA P + + W W +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 176 SMTILQYAQ---PVATESWGYNIWWAGCLIAFLVKMPLYGVHLWLPKAHVEAPVAGSMVL 232 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A I+LK+GGYG +R ++ L + P I L+L II + + QTD+K LIAYSS Sbjct: 233 AAILLKLGGYGMMRMMIVLDAFNKELAYPFII-LALWGIIMTGSICLRQTDLKSLIAYSS 291 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HMG V GI G GA+ M++HGL SS LF Y+R+H+R + GL Sbjct: 292 VSHMGLVAGGILIQTTWGFSGAITLMIAHGLTSSMLFCLANTTYERVHSRTMILIRGLQM 351 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + +AN+ LP +GE +I ++F S + G +++A YSL++ Sbjct: 352 ILPLTATWWFLANLANLALPPLPNLVGELTIITTLFTWSPWTIAITGAGTLITASYSLYM 411 Query: 428 Y 428 + Sbjct: 412 F 412 >gi|326536031|ref|YP_004300468.1| NADH dehydrogenase subunit 4 [Microtus fortis calamorum] gi|325512086|gb|ADZ23253.1| NADH dehydrogenase subunit 4 [Microtus fortis calamorum] Length = 459 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 203/367 (55%), Gaps = 13/367 (3%) Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYA 163 K + + + Y+ + L+ +++ +F + ++++FYI FEA+L+P ++I WG +ER+ A Sbjct: 86 KEPEHSKKLYISLLISLQILLVMSFSANELIMFYILFEATLVPTLIVITRWGNQTERLNA 145 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSF 219 F YT GSI +L A++ + T + I L +S P + Q W +W+A +F Sbjct: 146 GIYFLFYTLVGSIPLLIALIFIQTSTGTLNFI-LMTLSSSPIN-QTWSNNILWLACIMAF 203 Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279 +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGYG +R L P+ ++Y A Sbjct: 204 MVKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRVSTLLDPV-TKYMAYPFI 262 Query: 280 FLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339 LSL +I S + + QTD+K LIAYSS++HM V I GAM M++HGL Sbjct: 263 LLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVITAIMIQTPWSFMGAMTLMIAHGLT 322 Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399 SS LF Y+R+H+R + GL P A ++ ++AN+ LP T +GE ++ Sbjct: 323 SSLLFCLANTNYERIHSRTMIMARGLQMVFPLMATWWIMASLANLALPPTINLVGELVIT 382 Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM----V 455 +S F S+ +L ++++++YS+++ G + L+ RE + + Sbjct: 383 ISTFSWSSPSIILLGTNILITSIYSIYMIITTQRG-KLTNHMNNLQPSHTRESTLMTLHI 441 Query: 456 YPIAVLT 462 P+ +LT Sbjct: 442 LPLVLLT 448 >gi|193290206|ref|YP_002000323.1| NADH dehydrogenase subunit 4 [Ochotona curzoniae] gi|145967399|gb|ABP99056.1| NADH dehydrogenase subunit 4 [Ochotona curzoniae] Length = 459 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 207/362 (57%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + ++++F Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLLRKKLFISMLVLLQIFLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLV 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + ++ P + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 179 IQTLTT-PLT-DSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ ++Y A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMVMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 356 AAWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQ 415 Query: 433 FG 434 G Sbjct: 416 RG 417 >gi|114224051|gb|ABI54893.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 204/365 (55%), Gaps = 20/365 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL---QN 169 Query: 191 TSSIIDLYA----MSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + ++L A + + P S W +W+A +F +K+P++ H WLP AHV+AP A Sbjct: 170 SMGSLNLLATNLWLKEMPNS---WSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K L Sbjct: 227 GSMVLAAVLLKLGGYGMMRITMFLDPTTKSMTYPFLM-LCLWGMIMTSSICLGQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HM V + I GA M++HGL SS LF Y+R+H+R + Sbjct: 286 IAYSSVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMA 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++AL Sbjct: 346 RGLQTLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITIILIGLNMLITAL 405 Query: 423 YSLWL 427 YSL++ Sbjct: 406 YSLYM 410 >gi|115494841|ref|YP_778743.1| NADH dehydrogenase subunit 4 [Neophoca cinerea] gi|115344881|emb|CAJ56932.1| NADH dehydrogenase subunit 4 [Neophoca cinerea] Length = 459 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 121/348 (34%), Positives = 191/348 (54%), Gaps = 11/348 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFTATELIMFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSS-IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A++ + T + ++ Y P S W +W+A +F +K+P+ Sbjct: 153 TLMGSLPLLVALLYLQNNMGTLNFLMAQYWTQTLPNS---WSNILLWLACMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL S + A LS+ Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLSPLTS-FMAYPFMMLSMWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + I GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPLSYMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R H+R + GL +P A ++ ++ N+ LP T IGE LV+M+ F Sbjct: 329 LANSNYERTHSRIMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELLVVMASFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 SN +L ++++ALYSL++ G ++ +K RE Sbjct: 389 SNATIILMGTNIIITALYSLYMLITTQRG-KHTHHIKNIKPPFTRENT 435 >gi|302521258|ref|ZP_07273600.1| NADH dehydrogenase subunit NuoM2 [Streptomyces sp. SPB78] gi|302430153|gb|EFL01969.1| NADH dehydrogenase subunit NuoM2 [Streptomyces sp. SPB78] Length = 570 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 158/420 (37%), Positives = 232/420 (55%), Gaps = 31/420 (7%) Query: 55 FDKGRSS-FQMIEYYHWID-YFCSYHLGVDGISILLVVLTTFLTPFCILSSW--KSIQEN 110 FD+ +++ Q WI Y +HLGVDGIS+ L+VLT LT C L S+ Sbjct: 53 FDRDQAAHIQASTDVSWIAAYDIRFHLGVDGISLPLLVLTALLTFLCALHSYFRPPKGGT 112 Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170 R ++ L+LE + AF LD++LF++ FE LIPM+ +I WGG++R AA+KF L+ Sbjct: 113 PRAFVALLLLLEGGALAAFAVLDLVLFFVAFETVLIPMYFLIARWGGAKREEAAWKFILF 172 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS ML ++++ T ++ L S S+Q +A A+K PM+P Sbjct: 173 TLVGSAVMLLGLLLIGLRAGTFDMVALATDNGSDLSKSVQVTAVLAIGLGLAVKSPMWPL 232 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H+WLP AH APTAGSV LAG++LKMG YG +R +P+ P + FAP + L+ I++ Sbjct: 233 HSWLPAAHTAAPTAGSVMLAGVLLKMGTYGFVRVAIPVAPEGMKVFAPWLAVLAAAGILW 292 Query: 289 ASLVSM------VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSA 342 SL + D+K+L+AYSS+ HMG+V +GI S G+ GA+F ++HGL++ Sbjct: 293 GSLACLQLVRRGSGGDLKRLVAYSSVGHMGFVLLGIASMTPQGLNGALFANIAHGLITGL 352 Query: 343 LFFCVGVIYDRLHTRDIFAYGG-----LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 LFF VG + DR T + G L PRYAV++ +A++GLPG +GF GE L Sbjct: 353 LFFLVGGVKDRAGTSVLDRLSGSAGAALYGRAPRYAVLLAFAAVASLGLPGLAGFWGEML 412 Query: 398 VIMSVFQNSN--------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 + F ++ T +A FG +L+A Y L + R++ C L+D SL Sbjct: 413 TMYGAFDPASGLPRATYLTCMAVAGFGTLLTAAYLLLVVRRL------CMGPAPLRDNSL 466 >gi|2290444|gb|AAD08826.1| NADH dehydrogenase subunit 4 [Rhinopithecus bieti] Length = 459 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 199/361 (55%), Gaps = 12/361 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S +L D ++ L++LT +L P I++S + R+ Y+ + L+ +I F++ Sbjct: 53 STYLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPLRKKLYLSMMISLQISLIMTFMA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L I+++ Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLTGSLPLL--IMLLFVHNN 170 Query: 191 TSSI-IDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ I L ++ + + W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 LGSLNIPLLTLTAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L PL ++Y A LSL +I S + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRLTSILNPL-TEYMAYPFLMLSLWGMIMTSSTCLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 290 SVSHMALVIMASLIQTPWSFTGAIVLMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A + N+ LP T IGE LV+M+ F S+ +L ++++ALYSL+ Sbjct: 350 TLLPLMAFWWFAANLTNLALPPTINLIGELLVMMTSFSWSHVTIMLTGLNMLITALYSLY 409 Query: 427 L 427 + Sbjct: 410 M 410 >gi|195952363|ref|YP_002120667.1| NADH dehydrogenase subunit 4 [Gorilla gorilla gorilla] Length = 459 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 203/359 (56%), Gaps = 9/359 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFEA+LIP VII WG ER+ F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFEATLIPTLVIITRWGNQPERLNVGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDL-YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPF 228 T GS+ +L A++ + +I+ L + P S MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIHTHNTLGSLNILLLTLTAQELPNSWANNLMWLAYTMAFMVKMPLYGL 212 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA ++LK+GGYG +R +L L PL +++ A LSL +I Sbjct: 213 HLWLPKAHVEAPIAGSMMLAAVLLKLGGYGMMRLMLILNPL-TKHMAYPFLALSLWGMIM 271 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 272 TSSICLRQTDLKSLIAYSSISHMALVVAAILIQTPWSFTGAVVLMIAHGLTSSLLFCLAN 331 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 Y+R H+R + GL +P A+ ++ ++AN+ LP T +GE V+++ F SNT Sbjct: 332 SNYERTHSRIMILSQGLQTLLPLMALWWLLASLANLALPPTINLLGELSVLVTTFSWSNT 391 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +L ++++ALYSL+++ +G + +K RE +++ PI +L++ Sbjct: 392 TLLLTGSNMLITALYSLYMFTTTQWG-PLTHHITNMKPSFTRENILMFMHLSPILLLSL 449 >gi|118722313|ref|YP_908786.1| NADH dehydrogenase subunit 4 [Parargyrops edita] gi|117937801|gb|ABK58005.1| NADH dehydrogenase subunit 4 [Parargyrops edita] Length = 460 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 200/364 (54%), Gaps = 16/364 (4%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLS 131 S +L D +S L+VLT +L P IL+S + R Y+ L+ +I AF + Sbjct: 54 SPYLATDPLSSPLLVLTCWLLPLMILASQNHTATDPINRQRMYITLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEVIMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL---QN 170 Query: 191 TSSIIDLYAMS-KFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 T+ + +S PF + + W W A +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 TAGSLSFLTLSYSTPFQLLSYGDKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R L P + P I F +L +I + + QTD+K LIA Sbjct: 230 MILAAVLLKLGGYGMMRMLTIFEPSTEKMSYPFIIF-ALWGVIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVIGGILIQTPWSFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++AN+ LP +GE ++I S+F S L G +++A YS Sbjct: 349 LQMALPLMTTWWFISSLANLALPPLPNLMGELMIISSLFNWSWWTLALTGAGTLITAGYS 408 Query: 425 LWLY 428 L+++ Sbjct: 409 LYMF 412 >gi|301353488|ref|YP_003795708.1| NADH dehydrogenase subunit 4 [Morone saxatilis] gi|300069616|gb|ADJ66718.1| NADH dehydrogenase subunit 4 [Morone saxatilis] Length = 460 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 201/369 (54%), Gaps = 10/369 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + ++ D +S L+VLT +L P IL+S + R Y+ L+ +I AF Sbjct: 52 FLTPYMATDPLSSPLLVLTCWLLPLMILASQNHLSSEPINRQRMYISLLTALQIFLIMAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FEA+LIP +I WG +ER+ A F YT GS+ +L A++++ Sbjct: 112 SATEVIMFYVMFEATLIPTLFLITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLILQNN 171 Query: 189 KKTSSIIDL---YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLPFSNPLLLMTYADKMW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L L ++ P I F +L ++ + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRMLTVLESLTNELSYPFIIF-ALWGVVMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+ S L G +++A YSL Sbjct: 350 QTALPLMTAWWFIASLANLALPPLPNLMGELMIISSLLNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLYRKVVFG 434 +++ G Sbjct: 410 YMFMMTQRG 418 >gi|154759343|ref|YP_001425520.1| NADH dehydrogenase subunit 4 [Paleosuchus palpebrosus] gi|154425221|emb|CAM35794.1| NADH dehydrogenase subunit 4 [Paleosuchus palpebrosus] Length = 456 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 121/357 (33%), Positives = 190/357 (53%), Gaps = 8/357 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL----VLESMVIGAFLSLDM 134 LG D S L++L+ +L P +++S ++ + F+ L+ ++ AF++LD+ Sbjct: 55 LGSDQYSSPLMMLSCWLLPLMLMASQNAMSTTLAPQIQMFISILATLQLTLLMAFMALDL 114 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +L+P V I WG ER+ A F YT SI ++ +I+++ T S Sbjct: 115 MLFYIMFETTLLPTLVTISRWGARPERLNAGAYFLFYTITSSIPLMISILMIHNLIGTLS 174 Query: 194 --IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 I+ L M+ P W++ +F +KIP++ H WLP AHV+AP AGS+ LA ++ Sbjct: 175 LPILQLTPMTNHPPWTNTLFWLSTLVAFLVKIPIYGLHLWLPKAHVEAPIAGSMVLAAVL 234 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L + + P + L+L + SL+ + QTD+K LIAYSS++HM Sbjct: 235 LKLGGYGMLRVTNLLTAQVNTTYLP-LLTLALWGALTTSLICLRQTDLKSLIAYSSVSHM 293 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 VT I + G+M M++HGL SS LF Y+R HTR + G+ P Sbjct: 294 ALVTATILARDHLTPTGSMILMVAHGLTSSMLFCLANFNYERTHTRTLITTQGMQLTSPA 353 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + NM LP T GE VI S+F + +L ++A+Y+L+++ Sbjct: 354 LTAWWFLACSMNMALPPTFNLTGELTVITSLFNWLDITVILTGLSAFMTAVYTLYMF 410 >gi|298200346|ref|YP_003668007.1| NADH dehydrogenase subunit 4 [Uromastyx benti] gi|296531206|dbj|BAJ08056.1| NADH dehydrogenase subunit 4 [Uromastyx benti] Length = 458 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 132/414 (31%), Positives = 208/414 (50%), Gaps = 18/414 (4%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFL 119 M+ + H +Y VD IS L+VL+ +L P L+S ++ R +++ Sbjct: 47 MLNHMHLNNYMF-----VDSISAPLLVLSYWLLPMMALASQNHLKNEATIRKRIFLLLLA 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 +L++ + + ++ LFYI FEA+LIP +I WG R+ A YT S+ M Sbjct: 102 LLQTSLALCLTATELFLFYISFEATLIPTLALITRWGSQMNRLTAGTYLMFYTLTSSLPM 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAM---SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 L AI+ + + S+++ L AM S P W+AF +F +K+PM+ H WLP A Sbjct: 162 LMAIITIHNQMGHSNLV-LMAMLKTSPLPTYSANLTWLAFMAAFLVKMPMYGVHLWLPKA 220 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP AGS+ LA ++LK+GGYG +R + P + Y+ + LSL I L+ + Sbjct: 221 HVEAPIAGSMVLAAMLLKLGGYGIMRIAPTIHPTTNLYYP--LMALSLWGSIMTGLICLR 278 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTD+K LIAYSS+ HM V I GAM M++HG+ SS +F + Y+R + Sbjct: 279 QTDLKSLIAYSSVGHMASVIIATLMQTPWSTSGAMILMIAHGITSSMMFCLAHMTYERTN 338 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 TR + + GL P ++ + +ANM LP T +GE ++I S + +L Sbjct: 339 TRIMMSMRGLQSISPMMSMFWLAAILANMALPPTINLMGELMIITSAMNWATPTIILTGT 398 Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 +++A+YS+ L++ G K K + RE ++ T I P Sbjct: 399 ATLITAIYSMHLFKATQQG--KLPKDMLIHPPHTREYLLLTMHLAATALLTINP 450 >gi|157736141|ref|YP_001491509.1| NADH dehydrogenase subunit 4 [Chaetodontoplus septentrionalis] gi|157679368|dbj|BAF80424.1| NADH dehydrogenase subunit 4 [Chaetodontoplus septentrionalis] Length = 460 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 203/358 (56%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKS-IQENF---REYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S I E R Y+ L+ +I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQNHLISEPISRQRMYITLLTTLQIFLILAFGATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FY+ FEA+L+P V+I WG ER+ A + F YT S+ +L A++++ T S Sbjct: 117 IMFYVMFEATLLPTLVLITRWGNQMERLSAGFYFLFYTLAASLPLLIALLLLQNSTGTLS 176 Query: 194 IIDL-YA--MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L YA + ++ + W W + +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQYAPPLQLSSYADKIW-WASCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R L+ L PL + P I L+L ++ + + QTD+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRMLVVLEPLTKELSYPFIA-LALWGVVMTGSICLRQTDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V GI G GA+ M++HGL SSALF Y+R H+R + GL +P Sbjct: 295 MGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMALP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 + ++AN+ LP +GE +++ S+F S L G +++A YSL+++ Sbjct: 355 LMTTWWFIASLANLALPPLPNLMGELMILSSLFNWSWWTLALTGAGTLITAGYSLYMF 412 >gi|145976937|ref|YP_001165434.1| NADH dehydrogenase subunit 4 [Chlamydosaurus kingii] gi|117649903|gb|ABK53973.1| NADH dehydrogenase subunit 4 [Chlamydosaurus kingii] gi|117649917|gb|ABK53986.1| NADH dehydrogenase subunit 4 [Chlamydosaurus kingii] gi|117649931|gb|ABK53999.1| NADH dehydrogenase subunit 4 [Chlamydosaurus kingii] Length = 456 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 123/378 (32%), Positives = 210/378 (55%), Gaps = 26/378 (6%) Query: 64 MIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFL 119 M+ Y + + F + VD IS L++L+ +L P IL+S ++ R +++ Sbjct: 46 MLLNYQYANKF----VAVDQISAPLLILSLWLLPMMILASQNHLKHEPEIRKRIFLLNMT 101 Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFM 178 L ++++ A + ++LLF+I FE++LIP ++I WG ER+ A Y F YT GS+ + Sbjct: 102 ALTTLLMIALSTTNLLLFFISFESTLIPALILITRWGSQQERLTAGYYFLFYTLMGSLPL 161 Query: 179 LFAIVVMCWEKKTSSIIDLYAMSKFPFSI----QYWMWIAFFCSFAIKIPMFPFHTWLPN 234 L A++ + ++ ++L S F +W+A +F +K+PM+ H WLP Sbjct: 162 LMALLTI---NNSTDHLNLMMFSTFKLKTTSLTNNALWLACMMAFMVKMPMYGIHLWLPK 218 Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 AHV+AP AGS+ LA I+LK+GGYG IR + P+ + P+I L+L I+ A L + Sbjct: 219 AHVEAPIAGSMVLAAILLKLGGYGIIR-ISPILQPTEKLHYPLIL-LALWGIVMAGLTCL 276 Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354 QTD+K +IAYSS++HMG VT + G M M++HGL SS +F ++Y+R Sbjct: 277 RQTDLKAMIAYSSVSHMGLVTAAALLQTPMSISGTMTLMVAHGLTSSMMFCLANMVYERT 336 Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVF----TMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 ++R + GL + + +MM+F + N+ LP T +GE ++I +++ S Sbjct: 337 NSRTLITMRGLQ----KTSSLMMMFWLTACLTNLALPPTINLMGELMIISALYNWSPITF 392 Query: 411 VLASFGVVLSALYSLWLY 428 ++ + G L+A Y++ ++ Sbjct: 393 LMPAAGTALTAAYTMHMF 410 >gi|118196974|emb|CAL69866.1| NADH dehydrogenase subunit 4 [Pantherophis guttatus guttatus] Length = 445 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 196/365 (53%), Gaps = 7/365 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKS-IQENF---REYMIAFLVLESMVIGAFLS 131 + +L +D S L+ L+ +L P IL+S + I+E R ++ ++L+ + F++ Sbjct: 47 NMYLHLDSTSAPLLSLSYWLLPMTILASQHTMIKEPLQRQRTFLTTLIMLQLFISLTFMA 106 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++ L Y+ FEA+LIP +II WG +ER+ A F LYT S+ +L I+ + Sbjct: 107 SNLTLMYVMFEATLIPTLIIITRWGQQTERLTAGTYFMLYTLMTSMPLLMTILFLNNTTN 166 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 T ++ P++ + +W+A +F K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 167 TPTLFMQMMQPTSPWT-ELTLWVACLGAFLAKMPIYGLHLWLPKAHVEAPIAGSMVLAAI 225 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L + + F P I L+L A+L + QTD+K LIAYSSI+H Sbjct: 226 LLKLGGYGIIRMMQILPTMKTDLFLPFIV-LALWGATLANLTCLQQTDLKSLIAYSSISH 284 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I + + GAM M++HG SSALF Y+R TR + G + +P Sbjct: 285 MGLVIAAIMIQTQWSLSGAMALMIAHGFTSSALFCLANTTYERTKTRIMVLTRGFHNILP 344 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 ++ + N+ P T F GE L+ S+F T ++ ++++A YSL ++ Sbjct: 345 MLTTWWLLINLMNIATPPTMNFTGELLIASSLFNWCPTTIIMFGLSMLITASYSLHMFLS 404 Query: 431 VVFGV 435 G Sbjct: 405 TQTGT 409 >gi|255506419|ref|YP_003097172.1| NADH dehydrogenase subunit 4 [Psacothea hilaris] gi|238550504|gb|ACR44361.1| NADH dehydrogenase subunit 4 [Psacothea hilaris] Length = 444 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 210/364 (57%), Gaps = 11/364 (3%) Query: 68 YHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127 Y W++ SY LG+D +S L++L+ ++ IL+S K + N + F+++ M+ Sbjct: 42 YLWVN--VSYMLGMDLMSYSLILLSFWICSLMILASEKLFKLNNYSNLFLFIMVSLMLAL 99 Query: 128 --AFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVV 184 AF S+++ +FY+FFE SLIP ++I WG ER+ A YT S+ M+ +I Sbjct: 100 YLAFSSMNLFIFYLFFEISLIPTLILIIGWGYQPERVEAGIYLLFYTLLASLPMMVSIFF 159 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + +E S +D + M KF + +M++ F IK+PMF H WLP AHV+AP +GS Sbjct: 160 L-YENYFS--LDFFFM-KFNLN-NIFMYLCMNFVFFIKMPMFFVHLWLPKAHVEAPVSGS 214 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LAGIMLK+GGYG +R L+ LF L F + +SL+ + SL+ + Q+DIK LIA Sbjct: 215 MILAGIMLKLGGYGLMR-LMSLFLLVGSKFNFIFIMISLVGGFFISLICLRQSDIKSLIA 273 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+AHMG V GI + G GA+ ML+HGL SS LF + Y+R+ +R ++ G Sbjct: 274 YSSVAHMGLVLSGIMTLNNWGFWGALVMMLAHGLCSSGLFCLANISYERVLSRSLYLNKG 333 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 +++ +P + +F+ NM P + +GE ++I S+ + + + + SA YS Sbjct: 334 MINILPSMSFWWFMFSACNMAAPPSLNLLGEIILINSLVSFCSILMIFLALISFFSAAYS 393 Query: 425 LWLY 428 L+LY Sbjct: 394 LFLY 397 >gi|157504427|gb|ABV58894.1| NADH dehydrogenase subunit 4 [Gorilla gorilla] Length = 459 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 197/350 (56%), Gaps = 9/350 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFEA+LIP VII WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFEATLIPTLVIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ S I L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALI-HTHNTLGSLNILLLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R +L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMMLAAVLLKLGGYGMMRLMLILNPL-TKHMAYPFLALSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVAAILIQTPWSFTGAVVLMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A+ ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQALLPLMALWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456 NT +L ++++ALYSL+++ +G + +K RE +++ Sbjct: 390 NTTLLLTGSNMLITALYSLYMFTTTQWG-PLTHHITNMKPSFTRENILMF 438 >gi|177543334|gb|ACB73061.1| NADH dehydrogenase subunit 4 [Piliocolobus badius badius] Length = 459 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 134/417 (32%), Positives = 220/417 (52%), Gaps = 21/417 (5%) Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----RE 113 ++S +I Y S L D ++ L++LT +L P +++S + + Sbjct: 43 NQTSNNLINY--------STLLSSDPLTTPLLMLTAWLLPLMVMASQYHLHNESPSRKKL 94 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 Y+ ++L+ +I F++ +++LFYI FE +LIP +II WG +ER+ A F YT Sbjct: 95 YLSMMVLLQISLIMTFMATELILFYILFETTLIPTLIIITRWGNQAERLNAGTYFLFYTL 154 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLY-AMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHT 230 GS+ +L +V + + +II L K + + + W+A +F +K+P++ H Sbjct: 155 TGSLPLLIMLVYIYNSLGSLNIILLTITAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHL 214 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL ++Y A LSL +I S Sbjct: 215 WLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTLILDPL-TEYMAYPFLMLSLWGMIMTS 273 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + + QTD+K LIAYSS++HM V + GA+ M++HGL SS LF Sbjct: 274 SICLRQTDLKSLIAYSSVSHMALVIVASLIQTPWSFTGAITLMIAHGLTSSMLFCLANSN 333 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R H+R + GL +P A + + N+ LP T +GE LV+ + F S+ Sbjct: 334 YERTHSRIMMLARGLQTLLPLMAFWWLTANLTNLALPPTINLVGELLVVATSFSWSHVTI 393 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 V ++++ALYSL ++ G+ + +K RE +++ PI +L++ Sbjct: 394 VFMGLNMLITALYSLHMFVMTQRGM-FTHHIINMKPSFTRENMLMFMHLSPIILLSL 449 >gi|162374614|ref|YP_001604420.1| NADH dehydrogenase subunit 4 [Bufo melanostictus] gi|46981603|gb|AAT07856.1| NADH dehydrogenase subunit 4 [Bufo melanostictus] Length = 454 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 203/359 (56%), Gaps = 16/359 (4%) Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLL 136 +D IS L+VLT +LT +L+S + + R Y+ ++L+ + AFL+ +M+L Sbjct: 57 IDEISSPLLVLTCWLTAPTLLASQSKLSKEPLPRQRTYIFTIIMLQITTLLAFLADNMIL 116 Query: 137 FYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI- 194 F+I FEA++IP ++I WG ER+ A YT FGS+ +L A++ T SI Sbjct: 117 FFIMFEATMIPTLIVITRWGAQKERMLAGTYLIFYTLFGSMALLTAMLYFHETFGTMSIS 176 Query: 195 -IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + + +S S+ W A +F +K+P++ H WLP AHV+AP AGS+ LAG +LK Sbjct: 177 LMKSFFVSNTLTSLSLAWWAACLIAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAGTLLK 236 Query: 254 MGGYGCIRFLL----PLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 +GGYG +R + PLA P+I F SL+ ++ ++++ QTD+K LIA+SS++ Sbjct: 237 LGGYGILRINIFINDSFLPLA----MPLIVF-SLLGVLLSAVLCSRQTDLKSLIAFSSVS 291 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V + + G+M M+SHGLVSSALF Y+R +TR + G Sbjct: 292 HMGLVIAASVMKTEWSIAGSMVLMVSHGLVSSALFCLANTSYERTNTRTLILLQGTQIIF 351 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P A ++ + N+ LP + FIGE ++ S+FQ SN V+ G++ + YSL+++ Sbjct: 352 PLAAAWWLLAALMNLALPPSPNFIGELSILTSLFQWSNLTLVMTGLGIIFTTAYSLYMF 410 >gi|55139550|gb|AAV41401.1| NADH dehydrogenase subunit 4 [Panthera pardus] Length = 456 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 206/370 (55%), Gaps = 28/370 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETLSRKKLYITMLIILQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYI---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LVIQYWAKPISATWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL ++ S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPATNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+++ F SN VL ++++ALY+ Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIGELFVVVASFSWSNMTIVLMGTNIIITALYT 407 Query: 425 LWLYRKVVFG 434 L++ G Sbjct: 408 LYMLTTTQRG 417 >gi|55139562|gb|AAV41407.1| NADH dehydrogenase subunit 4 [Lynx lynx] Length = 456 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 212/384 (55%), Gaps = 32/384 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETLTRKKLYITMLILLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYI---QNTMGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWAKPISTTWSSIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL ++ S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPATNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALYS Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIILMGTNIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLS 448 L++ + + + +K+++ Sbjct: 408 LYM----LITTQRGKYTHHIKNIN 427 >gi|46917234|dbj|BAD18026.1| NADH dehydrogenase subunits 4 [Leiognathus equulus] Length = 460 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 200/364 (54%), Gaps = 10/364 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSI----QENFREYMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S + + R Y+ L++++I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQHHMLIEPHKRQRIYITLLTSLQTLLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++++ T S Sbjct: 117 MMFYITFEATLIPTLIIITRWGNQAERLNAGVYFLFYTLASSLPLLVALLILQNTTGTLS 176 Query: 194 IIDLYAMSKFPFSI---QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 ++ L P S + W W +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 177 LLTLQFNPPMPLSSLSDKLW-WAGCLLAFLVKMPLYGAHLWLPKAHVEAPVAGSMILAAV 235 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L PL Q P I L+L +I + + Q+D+K LIAYSS++H Sbjct: 236 LLKLGGYGMMRIMPLLEPLTKQLSLPFII-LALWGMIMTGSICLRQSDLKSLIAYSSVSH 294 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V G GA+ M++HGL SSALF Y+R H R + GL +P Sbjct: 295 MGLVIAGALLQTPWSFTGALILMIAHGLTSSALFCLANTNYERTHNRTMLLTRGLQTTLP 354 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 A +F++AN+ LP +GE +VI S+F S +L +++A YSL++Y Sbjct: 355 LMATWWFLFSLANLALPPLPNLMGELMVITSLFNWSPWTIILTGVSTLITAAYSLYMYLT 414 Query: 431 VVFG 434 G Sbjct: 415 TQRG 418 >gi|2290472|gb|AAD04670.1| NADH dehydrogenase subunit 4 [Pygathrix nemaeus] Length = 459 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 133/399 (33%), Positives = 215/399 (53%), Gaps = 13/399 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S +L D ++ L++LT +L P I++S + R+ Y+ + L+ +I F++ Sbjct: 53 STYLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPLRKKLYLSMMIFLQISLIMTFMA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L ++ + Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLAGSLPLLIMLIYTHNKLG 172 Query: 191 TSSIIDLYAMS-KFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + +I L M+ K S + + W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 173 SLNIPLLTLMAQKLTTSWSHNLAWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG ++ L PL +++ A LSL +I S + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMQLTPILNPL-TEHMAYPFLMLSLWGMIMTSSTCLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V G GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 292 SHMALVITGSLIQTPWSFTGAIILMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQSL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A V + N+ LP + IGE LV+ S F S+ + ++++ALYSL ++ Sbjct: 352 LPLMAFWWFVANLTNLALPPSINLIGELLVVTSSFSWSHITIIFTGLNMLITALYSLHMF 411 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 G + + +K RE +++ PI +LT+ Sbjct: 412 ITTQRG-TLTSHIINMKPSFTRENMLMFMHMSPIILLTL 449 >gi|109689619|ref|YP_659495.1| NADH dehydrogenase subunit 4 [Piliocolobus badius] gi|88174298|gb|ABD39301.1| NADH dehydrogenase subunit 4 [Piliocolobus badius] gi|177543339|gb|ACB73065.1| NADH dehydrogenase subunit 4 [Piliocolobus badius badius] Length = 459 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 134/417 (32%), Positives = 220/417 (52%), Gaps = 21/417 (5%) Query: 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FRE 113 ++S +I Y S L D ++ L++LT +L P +++S + + Sbjct: 43 NQTSNNLINY--------STLLSSDPLTTPLLMLTAWLLPLMVMASQYHLHNEGPSRKKL 94 Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTF 172 Y+ ++L+ +I F++ +++LFYI FE +LIP +II WG +ER+ A F YT Sbjct: 95 YLSMMVLLQISLIMTFMATELILFYILFETTLIPTLIIITRWGNQAERLNAGTYFLFYTL 154 Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLY-AMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHT 230 GS+ +L +V + + +II L K + + + W+A +F +K+P++ H Sbjct: 155 TGSLPLLIMLVYIYNSLGSLNIILLTITAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHL 214 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL ++Y A LSL +I S Sbjct: 215 WLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRLTLILDPL-TEYMAYPFLMLSLWGMIMTS 273 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + + QTD+K LIAYSS++HM V + GA+ M++HGL SS LF Sbjct: 274 SICLRQTDLKSLIAYSSVSHMALVIVASLIQTPWSFTGAITLMIAHGLTSSMLFCLANSN 333 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R H+R + GL +P A + + N+ LP T +GE LV+ + F S+ Sbjct: 334 YERTHSRIMMLTRGLQTLLPLMAFWWLTANLTNLALPPTINLVGELLVVATSFSWSHITI 393 Query: 411 VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 V ++++ALYSL ++ G+ + +K RE +++ PI +L++ Sbjct: 394 VFMGLNMLITALYSLHMFVMTQRGM-FTHHIINMKPSFTRENMLMFMHLSPIILLSL 449 >gi|109689563|ref|YP_659508.1| NADH dehydrogenase subunit 4 [Pygathrix nemaeus] gi|58003473|gb|AAW62241.1| NADH dehydrogenase subunit 4 [Pygathrix nemaeus nemaeus] gi|88174312|gb|ABD39314.1| NADH dehydrogenase subunit 4 [Pygathrix nemaeus] gi|325652677|gb|ADZ37173.1| NADH dehydrogenase subunit 4 [Pygathrix nemaeus] Length = 459 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 133/399 (33%), Positives = 215/399 (53%), Gaps = 13/399 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S +L D ++ L++LT +L P I++S + R+ Y+ + L+ +I F++ Sbjct: 53 STYLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPLRKKLYLSMMIFLQISLIMTFMA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L ++ + Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLAGSLPLLIMLIYTHNKLG 172 Query: 191 TSSIIDLYAMS-KFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 + +I L M+ K S + + W+A +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 173 SLNIPLLTLMAQKLTTSWSHNLAWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R L PL +++ A LSL +I S + QTD+K LIAYSS+ Sbjct: 233 AVLLKLGGYGMMRLTPILNPL-TEHMAYPFLMLSLWGMIMTSSTCLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 292 SHMALVIMASLIQTPWSFTGAIILMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQSL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A V + N+ LP + IGE LV+ S F S+ + ++++ALYSL ++ Sbjct: 352 LPLMAFWWFVANLTNLALPPSINLIGELLVVTSSFSWSHITIIFTGLNMLITALYSLHMF 411 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 G + + +K RE +++ PI +LT+ Sbjct: 412 ITTQRG-TLTSHIINMKPSFTRENMLMFMHMSPIILLTL 449 >gi|95104646|gb|ABF51597.1| NADH dehydrogenase subunit 4 [Colobus vellerosus x angolensis] Length = 459 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 138/447 (30%), Positives = 233/447 (52%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T I SL F++ S+ I+Y S +L D ++ L++LT +L P Sbjct: 25 INLTTHGLIISLIPLLFFNQTNSNL--------INY--STYLSSDPLTTPLLMLTAWLLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 I++S + + Y+ + L+ +I F++ +++LFYI FE +LIP +II Sbjct: 75 LMIMASQYHLHNESPSRKKIYLSMMIFLQISLIMTFMATELILFYILFETTLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + + +I+ L ++ S Sbjct: 135 RWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYIYNDLGSLNIMFLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAMLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 ++Y A LSL ++I S + + + D+K LIAYSS++HM V + GA+ Sbjct: 254 TEYMAYPFLMLSLWSMIMTSSICLRKKDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMIAHGLTSSMLFCLANSNYERTHSRIMMLPRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+M+ F S+ +L ++++ALYSL++Y G + +K R Sbjct: 374 NLMGELLVMMTSFSWSHITIMLTGLNMLITALYSLYMYITTQRG-PLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E ++ PI +L+ + G+ P Sbjct: 433 ENMLMLMHLSPIILLSLNPNIIMGLTP 459 >gi|95104630|gb|ABF51585.1| NADH dehydrogenase subunit 4 [Colobus guereza occidentalis] Length = 459 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 132/410 (32%), Positives = 215/410 (52%), Gaps = 17/410 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFL 130 CS HL D ++ L++LT +L P ++S + + Y+ + L+ +I F+ Sbjct: 52 CSTHLSSDPLTTPLLMLTAWLLPLMTMASQYHLHNESPSRKKLYLSMMVFLQISLIMTFM 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + +++LFYI FEA+LIP +II WG +ER+ A F YT GS+ +L ++ E Sbjct: 112 ATELILFYILFEATLIPTLIIITRWGVQAERLNAGTYFLFYTLTGSLPLLIMLLYTYNEL 171 Query: 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFC--SFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 + +I+ L ++ S + C +F +K+P++ H WL AHV+AP AGS+ L Sbjct: 172 GSLNIMFLTLTAQKLTSTWSHNLLGLACIMAFMVKMPLYGLHLWLLKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGYG +R L P+ +++ A LSL +I S + + QTD+K LIAYSS Sbjct: 232 AAVLLKLGGYGMMR-LTPILDPLTEHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSS 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V + GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVIMASLIQTPWSFTGAIILMMAHGLTSSMLFCLANSNYERTHSRTMMLPRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A + + N+ LP T +GE LV+ + F S+ +L ++++ALYSL++ Sbjct: 351 LLPLMAFWWFMANLTNLALPPTINLMGELLVVTASFSWSHVTIMLTGLNMLITALYSLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT----VFFGIYP 469 Y G S + +K RE ++ PI +L+ + G+ P Sbjct: 411 YITTQRG-SLTHHITNIKPSFTRENMLMLMHLSPIILLSLNPNIIMGLTP 459 >gi|9828505|gb|AAG00210.1| NADH dehydrogenase subunit 4 [Ochotona nubrica] Length = 460 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 207/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + ++++F Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLLRKKLFISMLVLLQIFLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + ++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQILTT-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMVMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|9828541|gb|AAG00228.1| NADH dehydrogenase subunit 4 [Ochotona roylei] Length = 404 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 203/360 (56%), Gaps = 8/360 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + ++ I+ LVL + +I F +++LF Sbjct: 3 DPLSTPLLILTFWLLPLMLIASQNHLSKEPLSRKKLFISMLVLLQIFLIMTFSVTELILF 62 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + I Sbjct: 63 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLIGSLPLLVALLYIHNTSGTLNFLI 122 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 I L A +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 123 IQLLARPLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 182 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 183 GGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 241 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 242 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERTHSRTMILARGLQTILPLMAA 301 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ G Sbjct: 302 WWLLASLANLALPPSINLIGELFVIVSSFSWSNFTIILAGTNMLITALYTLYMLSTTQRG 361 >gi|294056108|ref|YP_003549766.1| proton-translocating NADH-quinone oxidoreductase, chain M [Coraliomargarita akajimensis DSM 45221] gi|293615441|gb|ADE55596.1| proton-translocating NADH-quinone oxidoreductase, chain M [Coraliomargarita akajimensis DSM 45221] Length = 524 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 149/503 (29%), Positives = 252/503 (50%), Gaps = 27/503 (5%) Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV----WSVFD 56 MN L +P + V+L+S+ G R I+ I F F L V ++ FD Sbjct: 1 MNSTLLLAAILVPLVAGGVMLYSAQAAAGFRRM------IALIGFGFPLIVAGVLYAAFD 54 Query: 57 ---KGRSSFQMIEYYHWIDYFCSY-HLGVDGISILLVVLTTFLTPFCILSSWKSIQENFR 112 G +F+ + +D Y HLG++GIS+ L +L + L + S E Sbjct: 55 PSLTGGYNFE-TKLNTGLDIVGIYLHLGLNGISMPLFMLAAVVGLAAGLYAMYSKAERPH 113 Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTF 172 Y+ L+++ ++G F S+D+ FY F E +LIP F++IGVWGG R AA + +Y Sbjct: 114 LYLALLLIMQGGLMGTFASIDIFFFYFFHEFALIPTFIMIGVWGGVGRRSAAIEMTIYLT 173 Query: 173 FGSIFMLFAIVVMCWEKKTSS--IIDLYA-MSKFPFS--IQYWMWIAFFCSFAIKIPMFP 227 G++ L ++ + S +I+L ++ P S IQ ++ F I + +FP Sbjct: 174 LGAMLSLIGLIALYVNSGAESFSLIELRNYLASQPLSETIQSNIFALLLFGFGILVSLFP 233 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 FH+W P + APT ++ AG++ K G YG ++ PL P ++ P I +L L I+ Sbjct: 234 FHSWAPKGYAVAPTGAAMLHAGVLKKFGLYGLLQIAAPLLPEGGAHWFPWIVWLGLGNIL 293 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 L+++ Q D+K ++ YSS+ HMGY +GI + GV G + M++HGL + LF Sbjct: 294 IIGLITLAQKDVKMMLGYSSVMHMGYAFLGIATFSAVGVGGTILMMVAHGLSVALLFMLS 353 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 I+ R T ++ GGL P + TMA++GLPG F GEF + ++ ++ + Sbjct: 354 TCIHHRSKTFEMSDMGGLGSKAPVLCAFFVAGTMASIGLPGFGNFWGEFTIFAALGESPS 413 Query: 408 TVAVL--ASFGVVLSALYSLWLYRKVVFG-----VSKCEKVQQLKDLSLRERCMVYPIAV 460 T +L A+ G+++SA+Y L + +G + K + +++DL L E+ + Sbjct: 414 TQWILLPAAVGIIISAIYGLRAVANIFYGAPTESMQKRVNLDEIQDLKLFEKVPAGLLIA 473 Query: 461 LTVFFGIYPVPIRDTFSVPLSSI 483 V G++P + D ++ L+ + Sbjct: 474 ALVVTGLFPRVLSDNANLELAGL 496 >gi|133855233|gb|ABO39873.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 199/359 (55%), Gaps = 9/359 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS+ +L A++ + +I+ L A S MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNILLLTLTAQELSNSSANNLMWLAYTMAFMVKMPLYGL 212 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL +I Sbjct: 213 HLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGMIM 271 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 272 TSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLAN 331 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F SN Sbjct: 332 SNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWSNI 391 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +L ++++ALYSL+++ +G S + +K RE +++ PI +L++ Sbjct: 392 TLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLSL 449 >gi|88061937|gb|ABD38946.1| NADH dehydrogenase subunit 4 [Sciaenops ocellatus] Length = 460 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 196/363 (53%), Gaps = 10/363 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAF 129 F + ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF Sbjct: 52 FLNPYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPINRQRMYITLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + + ++FY+ FEA+LIP +I WG +ER+ A F GS+ +L A++++ Sbjct: 112 SATEGIMFYVMFEATLIPALFLITRWGNQAERLNAGTYFLFSILAGSLPLLVALLLLQNS 171 Query: 189 KKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T S++ L F+ + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQFSNPAQLTTFADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L L PL + P I F +L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRILPMLEPLTKELSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS+ HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVGHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A + ++AN+ LP +GE ++I S+F S L G +++A YSL Sbjct: 350 QMALPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|55139568|gb|AAV41410.1| NADH dehydrogenase subunit 4 [Puma concolor] Length = 456 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 214/375 (57%), Gaps = 14/375 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLVASQSHLSKETLTRKKLYITMLILLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIQHTLGTLNFLI 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +K P S + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQYWAK-PISTTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + L P +Q P + LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITILLNPTTNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALYSL++ + Sbjct: 357 AWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIILMGTNIIITALYSLYM----LI 412 Query: 434 GVSKCEKVQQLKDLS 448 + + +K+++ Sbjct: 413 TTQRGKYTHHIKNIN 427 >gi|37620606|gb|AAQ95112.1| NADH dehydrogenase subunit 4 [Leptonychotes weddellii] Length = 459 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 120/345 (34%), Positives = 188/345 (54%), Gaps = 5/345 (1%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFTATELIMFYILFEATLAPTLIIITRWGNQTERLNAGMYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK-FPFS-IQYWMWIAFFCSFAIKIPMFPF 228 T GS+ +L A++ + T + + L S+ P S +W+A +F +K+P++ Sbjct: 153 TLVGSLPLLVALLFIQNNMGTLNFLMLQLWSQPMPNSWSNTLLWLACMMAFMVKMPLYGL 212 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + P + LSL +I Sbjct: 213 HLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLNPLTNSMAYPFMM-LSLWGMIM 271 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 S + + QTD+K LIAYSS++HM V I GA M++HGL SS LF Sbjct: 272 TSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLAN 331 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 Y+R H+R + GL +P A ++ ++ N+ LP T IGE V+M+ F SN Sbjct: 332 SNYERTHSRTMILARGLQVLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNI 391 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 +L ++++ALYSL++ G ++ +K RE Sbjct: 392 TIILMGTNIIITALYSLYMLITTQRG-KYTHHIKNIKPSFTRENA 435 >gi|16357440|ref|NP_443706.1| NADH dehydrogenase subunit 4 [Pagrus major] gi|16267308|dbj|BAB70426.1| NADH dehydrogenase subunit 4 [Pagrus major] Length = 460 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 198/362 (54%), Gaps = 16/362 (4%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 +L D +S L+VLT +L P IL+S R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSSPLLVLTCWLLPLMILASQNHTSMDPINRQRMYITLLTSLQFFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + T+ Sbjct: 116 VIMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL---QNTA 172 Query: 193 SIIDLYAMS-KFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + +S PF + + W W A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 173 GSLSFLTLSYSTPFQLLSYGDKLW-WAACLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMI 231 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L P + P I F +L +I + + QTD+K LIAYS Sbjct: 232 LAAVLLKLGGYGMMRMLTIFEPATEKMSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYS 290 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GI GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 291 SVSHMGLVIGGILIQTPWSFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQ 350 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + ++AN+ LP +GE ++I S+F S L G +++A YSL+ Sbjct: 351 MALPLMTAWWFISSLANLALPPLPNLMGELMIISSLFNWSWWTLALTGAGTLITAGYSLY 410 Query: 427 LY 428 ++ Sbjct: 411 MF 412 >gi|258649545|ref|YP_003204820.1| NADH dehydrogenase subunit 4 [Nassarius reticulatus] gi|192757899|gb|ACF04905.1| NADH dehydrogenase subunit 4 [Nassarius reticulatus] Length = 454 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 208/388 (53%), Gaps = 15/388 (3%) Query: 63 QMIEYYHWIDYFCSYH-----LGVDGISILLVVLTTFLTPFCILSSWKSIQ---ENFREY 114 +I H + F SY L D +S +LV LT +++ +L+S S++ N+ + Sbjct: 29 SLISIIHLFNPFFSYESINSFLSFDSMSSILVSLTLWISLMMMLASQNSVKISKNNYLLF 88 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFF 173 + L L +++ FLS +L+FY FEASLIP ++I WG ER+ A +YT Sbjct: 89 SMFVLALNLILVVTFLSSSILIFYFLFEASLIPTLLLILGWGYQPERLQAGMYMMIYTVA 148 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY-WMW----IAFFCSFAIKIPMFPF 228 S+ +LF+I+ +S I+ + ++ P+S +Y W W + F +F +K+PMF Sbjct: 149 ASLPLLFSILWASQTLSSSDILMISSLRLHPYSTEYLWAWNFLTLLCFTAFLVKLPMFTV 208 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA ++LK+GGYG +R + F S +IF L++ + Sbjct: 209 HLWLPKAHVEAPVAGSMVLAAVLLKLGGYGILR-VYQYFNFISSQTCIIIFSLAIWGGVI 267 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 S+V Q D+K LIAYSSI HM + G FS G GA+ MLSHG SSALF Sbjct: 268 TSIVCFRQVDLKSLIAYSSIGHMSLMLAGAFSNTSWGWSGALILMLSHGFCSSALFALAN 327 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 Y++ HTR +F G++ +P A+ +F + NM P + +GE ++ S +S Sbjct: 328 YTYEKTHTRSLFLSKGMLMLLPLLAMWWFLFCIMNMAAPPSINLLGEIMIFPSTIFSSKY 387 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVS 436 + L+ALYS++LY G S Sbjct: 388 YLISLGLMSFLAALYSMYLYTSTQHGGS 415 >gi|51339320|gb|AAU00425.1| NADH dehydrogenase subunit 4 [Lynx canadensis] Length = 459 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 211/384 (54%), Gaps = 32/384 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ +L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETLTRKKLYITMLTLLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYI---QNTMGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWAKPISTTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL ++ S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPATNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALYS Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIILMGTNIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLS 448 L++ + + + +K+++ Sbjct: 408 LYM----LITTQRGKYTHHIKNIN 427 >gi|209886935|ref|YP_002290788.1| NADH dehydrogenase subunit 4 [Gloydius blomhoffi brevicaudus] gi|194395439|gb|ACF60276.1| NADH dehydrogenase subunit 4 [Gloydius blomhoffi brevicaudus] Length = 445 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 129/391 (32%), Positives = 201/391 (51%), Gaps = 27/391 (6%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDM 134 L +D IS L+ L+ +L P I++S K + R ++ +L+ + F++ ++ Sbjct: 50 LSLDAISAPLLALSYWLLPLMIIASQHAMAKEPMQRQRTFLATLTLLQLFISMTFMASNL 109 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L YI FEA+LIP +II WG +ER+ A F LYT S+ +L AI+ + ++ Sbjct: 110 TLMYIMFEATLIPTLIIITRWGQQTERLTAGTYFMLYTLTTSMPLLMAIIFI------NN 163 Query: 194 IIDLYAMSKFPF-----SIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + D + PF S W +W+A +F K+P++ H WLP AHV+AP AGS Sbjct: 164 LTD----TPTPFLQLLHSPNQWTNLLLWLACLTAFLAKMPIYGLHLWLPKAHVEAPIAGS 219 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG IR + L + F P I L+L I A+L + QTD+K LIA Sbjct: 220 MVLAAILLKLGGYGIIRMMQVLPTTKTDMFLPFIV-LALWGAILANLTCLQQTDLKSLIA 278 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V + + GAM M++HG SSALF Y+R HTR + G Sbjct: 279 YSSVSHMGLVVAAVIIQTPWSLAGAMTLMIAHGFTSSALFCLANTTYERTHTRILILTRG 338 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P ++ N+ +P T F E L+ ++F T +L ++++A YS Sbjct: 339 FHNILPMMTTWWLMANSLNIAIPPTMNFTSELLITSALFNWCPTTILLLGLSMLITASYS 398 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 L ++ G + Q + RE ++ Sbjct: 399 LHMFLSTQMGPTLLNN--QTEPTHSREHLLM 427 >gi|121622415|ref|YP_980226.1| NADH dehydrogenase subunit 4 [Furcifer oustaleti] gi|121309427|dbj|BAF44040.1| NADH dehydrogenase subunit 4 [Furcifer oustaleti] Length = 450 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 127/402 (31%), Positives = 219/402 (54%), Gaps = 12/402 (2%) Query: 44 NFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSS 103 N++F+ F S Q ++ ++ F + + +D IS L++L+ +L P IL+S Sbjct: 21 NYLFTTFFSFSMILSTLSLQWLKIPMTLNKFSNQYTTIDQISSPLLLLSYWLLPLTILAS 80 Query: 104 WKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-S 158 ++ R +++ L++ ++ A S +++LF+I FEA+LIP +II WG + Sbjct: 81 QNHLKYTTLMQKRMFLMCLATLQTFLVLALSSTNLILFFIMFEATLIPTMMIITRWGSQT 140 Query: 159 ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS 218 ER+ A F YT S+ +L AI+ + + + + + + P SI +W+A + Sbjct: 141 ERLTAGMYFMFYTLISSMPLLIAILYTNFHMNNLNTMLINSYNPKPNSI---LWLACILA 197 Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVI 278 F +K+PM+ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ P I Sbjct: 198 FMVKMPMYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LSPMLHQNQMLHYPFI 256 Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338 L+L +I SL+ + Q D+K LIAYSS++HMG + + S + GAM M++HG+ Sbjct: 257 I-LALWGMIMTSLICLRQPDLKSLIAYSSVSHMGLIVLATMIQTPSCLAGAMMLMVAHGI 315 Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398 SS LF ++Y+R +TR + G+ +P ++ + NM +P T +GE ++ Sbjct: 316 TSSMLFCLANMMYERTNTRTLAMMQGMQTILPLMTTFWLMANLTNMAIPPTINLLGEIII 375 Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK 440 ++F S +L ++A+YS++++ V G K +K Sbjct: 376 TSTMFNWSQPTLILTGSTTAITAVYSMYMFSAVQQG--KMQK 415 >gi|115494589|ref|YP_778808.1| NADH dehydrogenase subunit 4 [Leptonychotes weddellii] gi|115344951|emb|CAJ56997.1| NADH dehydrogenase subunit 4 [Leptonychotes weddellii] Length = 459 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 120/345 (34%), Positives = 188/345 (54%), Gaps = 5/345 (1%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FYI FEA+L P +II WG +ER+ A F Y Sbjct: 93 KLYITMLILLQLFLIMTFTATELIMFYILFEATLAPTLIIITRWGNQTERLNAGMYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK-FPFS-IQYWMWIAFFCSFAIKIPMFPF 228 T GS+ +L A++ + T + + L S+ P S +W+A +F +K+P++ Sbjct: 153 TLVGSLPLLVALLFIQNNMGTLNFLMLQLWSQPMPNSWSNTLLWLACMMAFMVKMPLYGL 212 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + P + LSL +I Sbjct: 213 HLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLNPLTNSMAYPFMM-LSLWGMIM 271 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 S + + QTD+K LIAYSS++HM V I GA M++HGL SS LF Sbjct: 272 TSSICLRQTDLKSLIAYSSVSHMALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLAN 331 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 Y+R H+R + GL +P A ++ ++ N+ LP T IGE V+M+ F SN Sbjct: 332 SNYERTHSRTMILARGLQVLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNI 391 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453 +L ++++ALYSL++ G ++ +K RE Sbjct: 392 TIILMGTNIIITALYSLYMLITTQRG-KYTHHIKNIKPSFTRENA 435 >gi|294486038|gb|ADE87891.1| NADH dehydrogenase subunit 4 [Ochotona roylei] Length = 404 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 202/360 (56%), Gaps = 8/360 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF---REYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F +++LF Sbjct: 3 DPLSTPLLILTFWLLPLMLIASQNHLSKETLSRKKLFISMLVLLQIFLIMTFSVTELILF 62 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + I Sbjct: 63 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLI 122 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 I L A +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 123 IQLLARPLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 182 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L L P+ ++Y A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 183 GGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 241 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 242 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERTHSRTMILARGLQTILPLMAA 301 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ G Sbjct: 302 WWLLASLANLALPPSINLIGELFVIVSSFSWSNFTIILAGTNMLITALYTLYMLSTTQRG 361 >gi|9828519|gb|AAG00217.1| NADH dehydrogenase subunit 4 [Ochotona forresti] Length = 460 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 130/360 (36%), Positives = 205/360 (56%), Gaps = 8/360 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFL-VLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + ++ I+ L +L+ +I F + +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESPSRKKLFISMLTLLQIFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNNTGTLNFLI 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 I L A +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 IQLLAHPLADSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L L P+ +++ A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRLTLILNPV-TEHMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ G Sbjct: 358 WWLLASLANLALPPSINLIGELFVIVSSFSWSNFTIILAGTNMLITALYTLYMLSTTQRG 417 >gi|51339345|gb|AAU00437.1| NADH dehydrogenase subunit 4 [Puma concolor] Length = 459 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 214/375 (57%), Gaps = 14/375 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLVASQSHLSKETLTRKKLYITMLILLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLMGSLPLLVALLYIQHTLGTLNFLI 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + +K P S + ++W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK Sbjct: 179 IQYWAK-PISTTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + L P +Q P + LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRITILLNPTTNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + + GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALYSL++ + Sbjct: 357 AWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIILMGTNIIITALYSLYM----LI 412 Query: 434 GVSKCEKVQQLKDLS 448 + + +K+++ Sbjct: 413 TTQRGKYTHHIKNIN 427 >gi|47588069|gb|AAT35904.1| NADH dehydrogenase subunit 4 [Avahi occidentalis] gi|114224206|gb|ABI55017.1| NADH dehydrogenase subunit 4 [Avahi occidentalis] gi|114224211|gb|ABI55021.1| NADH dehydrogenase subunit 4 [Avahi occidentalis] gi|114224216|gb|ABI55025.1| NADH dehydrogenase subunit 4 [Avahi occidentalis] gi|114224221|gb|ABI55029.1| NADH dehydrogenase subunit 4 [Avahi occidentalis] gi|114224226|gb|ABI55033.1| NADH dehydrogenase subunit 4 [Avahi occidentalis] gi|114224230|gb|ABI55036.1| NADH dehydrogenase subunit 4 [Avahi occidentalis] gi|114224236|gb|ABI55041.1| NADH dehydrogenase subunit 4 [Avahi occidentalis] gi|114224241|gb|ABI55045.1| NADH dehydrogenase subunit 4 [Avahi occidentalis] Length = 459 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 126/357 (35%), Positives = 203/357 (56%), Gaps = 16/357 (4%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQHHLAKEPCFRKKSYLSMLITLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI-- 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGMYFLFYTLTGSLPLLVALIYLQSSMGSLNLLT 178 Query: 195 IDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 I+L+ + + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA + Sbjct: 179 INLW-LKELPNS---WSTNLLWMACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAV 234 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS++H Sbjct: 235 LLKLGGYGMMRITMILDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSH 293 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 M V + I G GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 294 MALVIVAILVQTPLGFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLP 353 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL++ Sbjct: 354 LMTTWWLLASLNNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLYM 410 >gi|108742896|gb|ABG02061.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 130/393 (33%), Positives = 209/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +S+ S+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MIMLSQNLPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L P P I L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRLTTILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+ +H+R + GL +P A Sbjct: 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYEGIHSRTMLLARGLQTFLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP IGE VIM+ F SN ++ V+++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPFINLIGELFVIMTSFSWSNLTIIMTGLNVLITALYSLYMLTMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +LT+ Sbjct: 418 -KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|187373163|ref|YP_001876478.1| NADH dehydrogenase subunit 4 [Mus terricolor] gi|164370737|gb|ABY51645.1| NADH dehydrogenase subunit 4 [Mus terricolor] Length = 459 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 133/393 (33%), Positives = 217/393 (55%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLV-LESMVIGAFLSLDMLLF 137 D +S L++LTT+L P +++S +++ ++ I+ LV L+ ++ F + ++++F Sbjct: 59 DPLSTPLIILTTWLLPLMLMASQNHLKKESLILQKLYISMLVSLQILLTMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS--SI 194 YI FEA+LIP +II WG +ER+ A F YT GSI +L A++++ T +I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALILIQNYIGTLNFTI 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + L A + +W+A +F IK+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 179 LSLTAHTMDTSWSNNLLWLACMMAFLIKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG IR + L PL ++Y A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GSYGMIRISIILDPL-TKYMAYPFILLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I GA M++HGL SS LF Y+R+H+R + GL P A Sbjct: 298 IASIMIQTPWSFMGATMLMIAHGLTSSLLFCLANSNYERIHSRTMIMARGLQMIFPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP + +GE + +S+F SN +L ++++ +YS+++ G Sbjct: 358 WWLMASLANLALPPSINLMGELFIAISLFSWSNFSIILMGMNIIITGMYSMYMIITTQRG 417 Query: 435 VSKCEKVQ----QLKDLSLRERCMVYPIAVLTV 463 + ++L+L M+ PI +LT+ Sbjct: 418 KLTNHMINLQPSHTRELTLMALHMI-PIILLTI 449 >gi|187250391|ref|YP_001874810.1| NADH dehydrogenase subunit 4 [Uncia uncia] gi|145558810|gb|ABP73334.1| NADH dehydrogenase subunit 4 [Uncia uncia] Length = 459 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 202/370 (54%), Gaps = 28/370 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ + L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLVASQSHLSKETLARKKLYITMLITLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F LYT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLLYTLVGSLPLLVALLYI---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWTKPISTTWSNIFLWLACMMAFVVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P LSL ++ S + + QTD+K +IA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPTTNQMAYP-FMMLSLWGMVMTSSICLRQTDLKSVIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++ GL SS LF +R+H+R + Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIARGLTSSMLFCLANSNDERVHSRTMILARV 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+M+ F SN VL ++++ALY+ Sbjct: 348 LQAILPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIVLMGTNIIITALYT 407 Query: 425 LWLYRKVVFG 434 L++ G Sbjct: 408 LYMLTTTQRG 417 >gi|16357342|ref|NP_443641.1| NADH dehydrogenase subunit 4 [Antigonia capros] gi|16267221|dbj|BAB70348.1| NADH dehydrogenase subunit 4 [Antigonia capros] Length = 460 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 200/359 (55%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLV-LESMVIGAFLSLD 133 ++ D +S L+VLT +L P IL+S N + I+ L L+ +I AF + + Sbjct: 56 YMATDPLSTPLLVLTCWLLPLMILASQNHTAHEPANRQRMYISLLASLQIFLIMAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 +++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ T Sbjct: 116 VIMFYVMFEATLIPTLMLITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNSTGTL 175 Query: 193 SIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S++ L ++ + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SLLILQYSAPTQLITYADKLW-WAGCMLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R L+ L PL + P I F +L +I + + QTD+K LIAYSS++ Sbjct: 235 VLLKLGGYGMMRMLVVLEPLTKELCYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI G GA+ M++HGL SSALF Y+R H+R + GL + Sbjct: 294 HMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + ++A + LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 354 PLMTSWWFIASLAYLALPPLPNLMGELMIITSLFNWSWWTLALTGAGTLITAGYSLYMF 412 >gi|47059791|ref|YP_015446.1| NADH dehydrogenase subunit 4 [Scutigera coleoptrata] gi|46801336|emb|CAD45022.2| NADH dehydrogenase subunit 4 [Scutigera coleoptrata] Length = 445 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 147/406 (36%), Positives = 219/406 (53%), Gaps = 23/406 (5%) Query: 68 YHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF--REYMIAFLVLESMV 125 Y W+ YF LG D +S+ L+ LT ++ ILS +K Q++F +E+MI LVL + Sbjct: 46 YCWLGYF----LGGDSLSMTLISLTFWILGLMILSMYKIKQDSFGSQEFMIVNLVLLISL 101 Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVV 184 F S+D+L FYI+FE SLIP F++I WG ER+ A YT S+ +L ++V Sbjct: 102 FFTFSSMDLLSFYIWFEISLIPTFIMILGWGYQPERVQAGIYLMFYTLTASLPLLICLMV 161 Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 E + S I L ++ S+ Y + +F +K+PM+ H WLP AHV+AP AGS Sbjct: 162 YYEELGSLSFIMLGSVKLDVSSVMY---LFSILAFLVKMPMYMLHLWLPKAHVEAPIAGS 218 Query: 245 VFLAGIMLKMGGYGCIRF---LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301 + LAGI+LKMGGYG +R +L F S +F LSL+ +Y SL+ + Q DIK Sbjct: 219 MVLAGILLKMGGYGLLRMNQIMLMKFMSMSWFFIG----LSLLGGVYVSLMCLRQWDIKS 274 Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361 LIAYSS+AHMG V GI + G G++ M++HGL SS +F +IY+RL +R + Sbjct: 275 LIAYSSVAHMGMVLGGIMTCSTWGFVGSLVMMIAHGLCSSGMFCLSNIIYERLESRSLIV 334 Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSA 421 GLV P ++ + ++NM P + +GE ++ S+ F SA Sbjct: 335 SKGLVSIFPNLSMWFFLLCVSNMAAPPSMNLLGEICLLSSIIFWCKLTFWGLIFLSFFSA 394 Query: 422 LYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 YSL+L+ G K K + +RE +++ P+ +L + Sbjct: 395 AYSLYLFSLTQHG--KIMVFYGFKGIKVREYLLLFLHWMPLNILVL 438 >gi|55416212|gb|AAV50078.1| NADH dehydrogenase subunit 4 [Sminthopsis crassicaudata] Length = 459 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 127/367 (34%), Positives = 199/367 (54%), Gaps = 10/367 (2%) Query: 68 YHWIDYFCSYH--LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVL 121 YH D +Y+ +D +S L+VL+ +L P +++S + + Y+ +VL Sbjct: 43 YHNSDLGYNYNPSFSLDSLSGPLLVLSCWLLPLMMIASQNHLAHEPLTRKKIYLTMLIVL 102 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLF 180 + +I AF S ++++FYI FE +LIP +II WG +ER+ A F YT GS+ +L Sbjct: 103 QLSLIMAFASSELIMFYILFETTLIPTLIIITRWGSQNERLNAGLYFLFYTLVGSLPLLV 162 Query: 181 AIVVMCWEKKTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A++ + + I+ + M+ P +W A +F +K+P++ H WLP AHV+ Sbjct: 163 ALLYLHTNLGSLHILTMSLMTPTMDPSMSTTMLWFACMTAFMVKMPLYGLHLWLPKAHVE 222 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP AGS+ LA I+LK+GGYG +R P + P + LSL ++ S V + QTD Sbjct: 223 APIAGSMVLAAILLKLGGYGIMRITTLTEPATTNLCYPFMI-LSLWGMVMTSSVCLRQTD 281 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS++HMG V + GA M++HGL SS LF Y+R+H+R Sbjct: 282 LKSLIAYSSVSHMGLVIVAALMQSPLSFMGASVLMIAHGLTSSMLFCLANTNYERIHSRT 341 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GL +P ++ ++AN+ P + +GE +VIM+ F SN +L V Sbjct: 342 LILTRGLQMILPLMCAWWLLASLANLAQPPSINLLGELMVIMTTFSWSNFSLILLGVNTV 401 Query: 419 LSALYSL 425 ++ALYSL Sbjct: 402 ITALYSL 408 >gi|326536097|ref|YP_004300529.1| NADH dehydrogenase subunit 4 [Crassostrea nippona] gi|291576061|gb|ADE18727.1| NADH dehydrogenase subunit 4 [Crassostrea nippona] Length = 449 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 138/422 (32%), Positives = 218/422 (51%), Gaps = 29/422 (6%) Query: 51 VWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCIL--SSWKSIQ 108 VW+ F + + + FC VD S +V LT ++ I+ SS S++ Sbjct: 32 VWTAFSFTYWGSSGVSWESLSELFC-----VDIYSSSMVSLTLWVCGISIMVSSSVTSLR 86 Query: 109 ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKF 167 + +L +++ F+ + +FYI FE++L+PM II +WGG ER+ + Sbjct: 87 GTPNTFWALATLLGFLLVQCFMVNTLAMFYILFESTLVPMISIIAIWGGQLERVPSIQYI 146 Query: 168 FLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI------QYWMWIAFFCSFAI 221 +YT GS +L + M +LY S F + I +++ W A F F I Sbjct: 147 AVYTVAGSFPLLLVFITM----------ELYVGSSFMWFISVKTDFEWYFWTACFLGFLI 196 Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFL 281 K+P FPFHTWLP AHVQAP GSV LAGI+LK+GGYG R ++ F + + L Sbjct: 197 KLPAFPFHTWLPKAHVQAPVGGSVILAGILLKLGGYGITRLMMT-FSYTLEMVGIFVITL 255 Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341 SL +Y +++ + Q+D+KKLIA+SS++HM + IG+FS + G+ GA ++SHGL+SS Sbjct: 256 SLYGSVYGAVMCIRQSDVKKLIAFSSVSHMSFPVIGLFSCTEVGLVGAYIMLVSHGLISS 315 Query: 342 ALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 LF G+ + +H+R I A V +P + +V M N+G+P I E L ++S Sbjct: 316 GLFVLCGINSELVHSRKIKAMAEGVRAIPSLSFFWLVMIMLNLGVPPCPVIISEVLSVVS 375 Query: 402 VFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC----MVYP 457 V + + VLS YS LY ++ K + +++L++ ++YP Sbjct: 376 AIALWPWVFIPLALYFVLSGAYSFSLYCQLTSSKLKNKPEVMFNEMTLKDMSAMYFLLYP 435 Query: 458 IA 459 +A Sbjct: 436 LA 437 >gi|164596318|ref|YP_423984.2| NADH dehydrogenase subunit 4 [Sminthopsis crassicaudata] Length = 458 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 127/367 (34%), Positives = 199/367 (54%), Gaps = 10/367 (2%) Query: 68 YHWIDYFCSYH--LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVL 121 YH D +Y+ +D +S L+VL+ +L P +++S + + Y+ +VL Sbjct: 43 YHNSDLGYNYNPSFSLDSLSGPLLVLSCWLLPLMMIASQNHLAHEPLTRKKIYLTMLIVL 102 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLF 180 + +I AF S ++++FYI FE +LIP +II WG +ER+ A F YT GS+ +L Sbjct: 103 QLSLIMAFASSELIMFYILFETTLIPTLIIITRWGSQNERLNAGLYFLFYTLVGSLPLLV 162 Query: 181 AIVVMCWEKKTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 A++ + + I+ + M+ P +W A +F +K+P++ H WLP AHV+ Sbjct: 163 ALLYLHTNLGSLHILTMSLMTPTMDPSMSTTMLWFACMTAFMVKMPLYGLHLWLPKAHVE 222 Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298 AP AGS+ LA I+LK+GGYG +R P + P + LSL ++ S V + QTD Sbjct: 223 APIAGSMVLAAILLKLGGYGIMRITTLTEPATTNLCYPFMI-LSLWGMVMTSSVCLRQTD 281 Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358 +K LIAYSS++HMG V + GA M++HGL SS LF Y+R+H+R Sbjct: 282 LKSLIAYSSVSHMGLVIVAALMQSPLSFMGASVLMIAHGLTSSMLFCLANTNYERIHSRT 341 Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVV 418 + GL +P ++ ++AN+ P + +GE +VIM+ F SN +L V Sbjct: 342 LILTRGLQMILPLMCAWWLLASLANLAQPPSINLLGELMVIMTTFSWSNFSLILLGVNTV 401 Query: 419 LSALYSL 425 ++ALYSL Sbjct: 402 ITALYSL 408 >gi|226464150|ref|YP_002735118.1| NADH dehydrogenase subunit 4 [Kinyongia fischeri] gi|124055032|gb|ABM90405.1| NADH dehydrogenase subunit 4 [Kinyongia fischeri] Length = 449 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 116/358 (32%), Positives = 196/358 (54%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIGAFLSLDM 134 + VD +S L+ L+ +L P IL+S + Q + +++ L++ + A S ++ Sbjct: 56 MSVDQLSSPLLTLSYWLLPVAILASQNHLKHTTQMQKQMFLLCLATLQTFLTIALSSTNL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LF++ FEA+LIP +II WG ER+ A F YT S+ +L A++ + + + + Sbjct: 116 ILFFVMFEATLIPTMIIITRWGNQKERLTAGLYFMFYTLISSMPLLIALLFIKHQMNSLN 175 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 I+ + S P +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK Sbjct: 176 ILLITMTSHKP---NITLWLACTIAFMVKMPLYGLHLWLPKAHVEAPIAGSMALATILLK 232 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R LF + ++ V L+L ++ SL+ + Q D+K LIAYSS++HMG Sbjct: 233 LGGYGMMRISPTLFQPQTLHYPFVT--LALWGMVMTSLICLRQPDLKSLIAYSSVSHMGL 290 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V S + GA M++HG+ SS LF ++Y+R +R + G+ MP A Sbjct: 291 VVTATIIQTPSSLAGATILMVAHGITSSMLFCLANMMYERTGSRMLTTLQGMQTTMPLMA 350 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + NM LP T +GE ++I + F S +L ++A+YS+ ++ + Sbjct: 351 TFWLLANLTNMALPPTLNLLGEIMIITATFNWSYPTLILTGSAATITAIYSMHMFSTI 408 >gi|291612382|ref|YP_003540808.1| NADH dehydrogenase subunit 4 [Sibon nebulatus] gi|189164438|gb|ACD77377.1| NADH dehydrogenase subunit 4 [Sibon nebulatus] Length = 445 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 125/365 (34%), Positives = 194/365 (53%), Gaps = 11/365 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLD 133 HL +D S L VL+ +L P +L+S K + R ++ +L+ + F + + Sbjct: 49 HLYLDFTSTPLFVLSYWLLPLTMLASQHATAKEPIQRQRTFLTMLTLLQLFISMTFTAYN 108 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 + L YI FEA+L+P +II WG +ER+ A F LYT S+ +L I+ + TS Sbjct: 109 LTLMYIMFEATLVPTLIIITRWGQQAERLIAGTYFMLYTLTTSMPLLLMILFL---NNTS 165 Query: 193 SIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + L+ P + + +W+A +F K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 166 NTPTLFMHLIQPTNRLTELMLWLACLTAFLAKMPIYGLHLWLPKAHVEAPIAGSMVLAAI 225 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR L P + F P + L+L A+L + QTD+K LIAYSSI+H Sbjct: 226 LLKLGGYGIIRMAQILPPTKTDMFLPFVV-LALWGATLANLTCLQQTDLKSLIAYSSISH 284 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V I + + GAM M++HG SSALF Y+R TR + G + +P Sbjct: 285 MGLVITAIMIQTQWSLSGAMALMIAHGFTSSALFCLANTTYERTKTRIMILTRGFHNILP 344 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 + ++ + N+ +P T F GE L+ S+F T ++ ++++A YSL ++ Sbjct: 345 MFTTWWLITNLMNIAMPPTMNFTGELLIASSLFNWCPTTIIIFGLSMMITASYSLHMFLS 404 Query: 431 VVFGV 435 G+ Sbjct: 405 TQMGM 409 >gi|56548729|ref|YP_161204.1| NADH dehydrogenase subunit 4 [Tarsipes rostratus] gi|56398500|emb|CAG26377.1| NADH dehydrogenase subunit 4 [Tarsipes rostratus] Length = 459 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 122/319 (38%), Positives = 190/319 (59%), Gaps = 8/319 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ +I AF + +M++FYI FEA+LIP +II WG +ER+ A F Y Sbjct: 93 KTYLTMLIILQLFLIMAFTASEMIMFYILFEATLIPTLIIITRWGNQNERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSII--DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228 T GS+ +L A++ M + + I+ +Y+ + +P + ++W A +F +K+PM+ Sbjct: 153 TLAGSLPLLVALLYMYNKLGSLHILLMSMYSPTLYPSTSNSFLWYACMTAFMVKMPMYGL 212 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA I+LK+GGYG +R + P+ S + P + LSL +I Sbjct: 213 HLWLPKAHVEAPIAGSMVLAAILLKLGGYGIMRITIFTNPITSHIYYPFMI-LSLWGMIM 271 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVE--GAMFQMLSHGLVSSALFFC 346 S + + QTD+K LIAYSS++HMG V I S M+S + GA M++HGL SS LF Sbjct: 272 TSSICLRQTDLKSLIAYSSVSHMGLVIIA--SLMQSTLSFMGATTLMIAHGLTSSMLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R+H+R + GL +P ++ ++AN+ LP + +GE VI+S F S Sbjct: 330 ANTNYERIHSRTMILARGLQMILPLMCSWWLLASLANLALPPSINLLGELAVIISSFSWS 389 Query: 407 NTVAVLASFGVVLSALYSL 425 N +L V++A+YSL Sbjct: 390 NLSIILLGVNTVITAIYSL 408 >gi|51450528|gb|AAU02341.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I AF + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMAFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTTAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|116257298|gb|ABJ90970.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + D+++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATDLIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|55139546|gb|AAV41399.1| NADH dehydrogenase subunit 4 [Catopuma temminckii] Length = 456 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 212/384 (55%), Gaps = 32/384 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLVASQSHLSKETLTRKKLYITMLILLQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYI---QNTMGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWTKPIPTTWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL ++ S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITIMLNPATNQMAYPFMM-LSLWGMVMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERVHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T IGE V+M+ F SN +L ++++ALYS Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNMTIILMGTNIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLS 448 L++ + + + +K+++ Sbjct: 408 LYM----LITTQRGKYTHHIKNIN 427 >gi|9828529|gb|AAG00222.1| NADH dehydrogenase subunit 4 [Ochotona cansus cansus] gi|9828531|gb|AAG00223.1| NADH dehydrogenase subunit 4 [Ochotona cansus cansus] Length = 460 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 207/361 (57%), Gaps = 10/361 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + ++ F + ++++F Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLLRKKLFISMLVLLQIFLVMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLV 178 Query: 197 LYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 + ++ P + + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK Sbjct: 179 IQILTT-PLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLK 237 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R L L P+ ++Y A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 238 LGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMVMTSSICLRQTDLKSLIAYSSVSHMAL 296 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 297 VIVAILIQTPWSFMGATALMVAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMA 356 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 357 AWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQR 416 Query: 434 G 434 G Sbjct: 417 G 417 >gi|46917243|dbj|BAD18032.1| NADH dehydrogenase subunits 4 [Leiognathus splendens] Length = 460 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 8/363 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWK--SIQENFRE--YMIAFLVLESMVIGAFLSLDM 134 + D +S L+VLT +L P IL+S S + + R+ Y+ L++++I AF + ++ Sbjct: 57 MATDPLSTPLLVLTCWLLPLMILASQHHMSFEPHARQRLYITLLSSLQTLLILAFSATEI 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 ++FYI FEA+LIP +II WG +ER+ A F YT S+ +L A++ + T S Sbjct: 117 MMFYIAFEATLIPTLIIITRWGNQAERLNAGTYFLFYTLISSLPLLLALLTLQNNTGTLS 176 Query: 194 IIDLY--AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++ L + P W A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 177 LMTLQFNPHTTLPSLTDKLWWTACLMAFLVKMPLYGAHLWLPKAHVEAPVAGSMILAAVL 236 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L PL Q P I L+L +I + + Q+D+K LIAYSS++HM Sbjct: 237 LKLGGYGMMRMMPLLEPLTKQLSYPFII-LALWGMIMTGSICLRQSDLKSLIAYSSVSHM 295 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G V G GA+ M++HGL SSALF Y+R H R + GL P Sbjct: 296 GLVVAGALLQTPWSFSGALILMIAHGLTSSALFCLANTNYERTHNRTMLLTRGLQTAFPL 355 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A +F++AN+ LP +GE +VI S+F S +L G +++A YSL+++ Sbjct: 356 MATWWFLFSLANLALPPLPNLMGELMVISSLFNWSPWTLILTGAGTLITAGYSLYMFLTT 415 Query: 432 VFG 434 G Sbjct: 416 QRG 418 >gi|315142047|gb|ADT82009.1| NADH dehydrogenase subunit 4L [Hylobates agilis] gi|315142061|gb|ADT82022.1| NADH dehydrogenase subunit 4L [Hylobates agilis] gi|315142075|gb|ADT82035.1| NADH dehydrogenase subunit 4L [Hylobates agilis] Length = 459 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 190/345 (55%), Gaps = 7/345 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FY+ FEA+LIP +II WG ER+ A F Y Sbjct: 93 KLYLSMLITLQVSLIMTFTATELMMFYVLFEATLIPTLIIITRWGNQPERLNAGSYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFP 227 T GS+ +L A+V S I L +S + + MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALV-HTHNTLGSLNITLLTLSSQNLTDSWSNNLMWLAYMMAFMVKMPLYG 211 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL +I Sbjct: 212 LHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLMLSLWGMI 270 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 S + + QTD+K LIAYSS++HM V I GA M++HGL SS LF Sbjct: 271 MTSSICLRQTDLKSLIAYSSVSHMALVITAILIQTPWSFTGATVLMIAHGLTSSLLFCLA 330 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 Y+R H+R + GL +P A + ++AN+ LP T +GE V+M+ F +N Sbjct: 331 NSNYERTHSRIMILSRGLQALLPLMAFWWLAASLANLALPPTINLLGELFVLMASFSWAN 390 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 T +L V+++ALYSL+++ G + ++ +K RE Sbjct: 391 TTIMLTGLNVLITALYSLYMFIMTQRG-TPTHHIKNMKPSLTREN 434 >gi|261416523|ref|YP_003250206.1| proton-translocating NADH-quinone oxidoreductase, chain M [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372979|gb|ACX75724.1| proton-translocating NADH-quinone oxidoreductase, chain M [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327786|gb|ADL26987.1| NADH-quinone oxidoreductase, M subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 546 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 140/502 (27%), Positives = 257/502 (51%), Gaps = 21/502 (4%) Query: 5 FLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64 L ++ PF+ +++ +S S + +GI F+ ++ G S Sbjct: 2 LLHLLVLAPFVAAILMVMTSKEDSKSSSRLAILMGIG-----FTAMSVALIAGGSVSTDA 56 Query: 65 IEYYHWIDYFCS----YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 IE++ C Y+L G++ +V L++ L+ ++S+ ++R + I Sbjct: 57 IEWFQIPG--CKGPVYYYLTSHGLASWMVFLSSGLSLVSLISARGITCRSYRNFAIGIFS 114 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180 L + G FL+ D +LF+ FFEA +IP V+I +GG +R+ AA F +YT GS M+ Sbjct: 115 LMGAMNGTFLAADAVLFFFFFEAMVIPAAVLIAGFGGKDRMKAAMTFAIYTLVGSAPMMV 174 Query: 181 AIVVMCWEKKTSSIIDLY-AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQA 239 A+ + S++I L A+ P Q + + F +F +K P+FPFH W + +A Sbjct: 175 ALWYILTIADNSTLISLAVAVQGLPEGTQNVLLVCFLLAFLVKTPIFPFHGWQAITYAEA 234 Query: 240 PTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 P S L G M K G +G I ++LP+FPL+ + +++ L L +Y +L+++ TD Sbjct: 235 PAPLSAILTGAMSKAGVFGFIVWILPIFPLSMNAVSGLMW-LGLFTAVYGALMALRATDG 293 Query: 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDI 359 KKL+A+SS+ H+G G+FS ++ + + +++HG+ + A F+ +G+ TR++ Sbjct: 294 KKLLAFSSMGHLGLAVAGVFSLSEAMLPAVLVLLVAHGISAGAQFYLMGIAERMAGTREL 353 Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GGL P ++ + + + +PGT+GF+GEF V+++++ A++A F ++L Sbjct: 354 DQLGGLSSKNPVFSTLFGFAGVMALAVPGTAGFVGEFSVLLALWDMGPLPALVAGFTLIL 413 Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 SA Y L +KV+FG E + + + L E + + +L + FG +P + DT + Sbjct: 414 SAAYMLRFIQKVIFGKQAREYEEGRRTMPL-EGVSIAVMLLLLLVFGFHPAYVTDTLNEA 472 Query: 480 LSS-------IIENYTLKTGYS 494 ++ ++ N L G + Sbjct: 473 EATEDPAAVQVLNNAALNNGEA 494 >gi|157736239|ref|YP_001491327.1| NADH dehydrogenase subunit 4 [Triodon macropterus] gi|139000671|dbj|BAF51851.1| NADH dehydrogenase subunit 4 [Triodon macropterus] Length = 460 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 201/363 (55%), Gaps = 14/363 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S ++ D +S L+VLT +L P IL+S R Y+ L+ +I AF + Sbjct: 54 SPYMATDPLSTPLLVLTCWLLPLMILASQNHTALEPVNRQRMYITLLTSLQFFLILAFGA 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FY+ FEA+LIP ++I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 114 TEIIMFYVMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--QNT 171 Query: 191 TSSIIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 T ++ L P + + W W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 TGTLSLLTLQFSDPLHLTSYADKLW-WAGCMIAFLVKMPLYGAHLWLPKAHVEAPVAGSM 230 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LIAY Sbjct: 231 ILAAVLLKLGGYGMMRMLVVLEPLTKELSYPFII-LALWGVIMTGSICLRQTDLKSLIAY 289 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SS++HMG V GI G+ GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 290 SSVSHMGLVVGGILIQTPWGLTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARGL 349 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P + ++AN+ LP +GE ++I S+ S L GV+++A YSL Sbjct: 350 QMALPLMTTWWFIASLANLALPPLPNLMGELMIISSLISWSWWTLALTGAGVLITAGYSL 409 Query: 426 WLY 428 +++ Sbjct: 410 YMF 412 >gi|114224011|gb|ABI54861.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 124/361 (34%), Positives = 198/361 (54%), Gaps = 12/361 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL--QNS 170 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ L W +W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 MGSLNLLTTNLWLKEMPNSWSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRITMFLDPTTKSMTYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 290 SVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL+ Sbjct: 350 TLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITIILIGLNMLITALYSLY 409 Query: 427 L 427 + Sbjct: 410 M 410 >gi|9828525|gb|AAG00220.1| NADH dehydrogenase subunit 4 [Ochotona curzoniae] Length = 460 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 207/362 (57%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + ++++F Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLLRKKLFISMLVLLQIFLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLV 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + ++ P + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 179 IQILTT-PLT-DSWSNSLLWLACTMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ ++Y A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMVMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 356 AAWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQ 415 Query: 433 FG 434 G Sbjct: 416 RG 417 >gi|156077925|gb|ABU47427.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG SER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLTIITRWGNQSERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|9828527|gb|AAG00221.1| NADH dehydrogenase subunit 4 [Ochotona curzoniae] Length = 460 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 207/362 (57%), Gaps = 12/362 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F + ++++F Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKESLLRKKLFISMLVLLQIFLIMTFSATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + + Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLV 178 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + ++ P + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 179 IQILTT-PLT-DSWSNSLLWLACTMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R L L P+ ++Y A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRLTLILNPV-TEYMAYPFLLLSLWGMVMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 A ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ Sbjct: 356 AAWWLLASLANLALPPSINLIGELFVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQ 415 Query: 433 FG 434 G Sbjct: 416 RG 417 >gi|209886963|ref|YP_002290827.1| NADH dehydrogenase subunit 4 [Bungarus fasciatus] gi|170774103|gb|ACB36674.1| NADH dehydrogenase subunit 4 [Bungarus fasciatus] Length = 445 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 198/361 (54%), Gaps = 19/361 (5%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 + +L +D IS L++++ +L P +L+S +++ + R +++ +L+ + F++ Sbjct: 47 NMYLIMDNISTPLLIMSYWLLPLTMLASQQTLSKEPIQRQRAFLMTLTLLQLFISLTFMA 106 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 + L Y+ FEA+LIP +II WG +ER+ A F LYT S+ +L AI+ + Sbjct: 107 YTLTLMYLMFEATLIPTLIIITRWGQQAERLTAGTYFMLYTLTTSMPLLMAILFL---NN 163 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 TS+ L+ + P W +W+A +F K+P++ H WLP AHV+AP AGS+ Sbjct: 164 TSNTPTLFLL--MPQPNNEWTGPILWLACLTAFLAKMPIYGLHLWLPKAHVEAPIAGSMV 221 Query: 247 LAGIMLKMGGYGCIRF--LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 LA I+LK+GGYG IR +LPL L + F P I LSL I ASL + QTD+K LIA Sbjct: 222 LAAILLKLGGYGIIRMSQILPL--LKTDMFLPFIV-LSLWGAILASLTCLQQTDLKSLIA 278 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSSI+HMG V I + G+ GAM M++HG SSALF Y+R TR + G Sbjct: 279 YSSISHMGLVIAAISIQTQWGLTGAMMMMIAHGFTSSALFCLANTTYERTQTRIMILTRG 338 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 + +P ++ + N+ P + F E L+ S+F +L ++++A YS Sbjct: 339 FHNILPMTTTWWLLANLMNIATPPSINFTSELLIASSLFNWCPMSIILFGLLMLITASYS 398 Query: 425 L 425 L Sbjct: 399 L 399 >gi|326536003|ref|YP_004300442.1| NADH dehydrogenase subunit 4 [Microtus fortis fortis] gi|325512072|gb|ADZ23240.1| NADH dehydrogenase subunit 4 [Microtus fortis fortis] Length = 459 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 119/344 (34%), Positives = 190/344 (55%), Gaps = 13/344 (3%) Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMC 186 +F + ++++FYI FEA+L+P ++I WG +ER+ A F YT GSI +L A++ + Sbjct: 109 SFSANELIMFYILFEATLVPTLIVITRWGNQTERLNAGIYFLFYTLVGSIPLLIALIFIQ 168 Query: 187 WEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 T + I L +S P Q W +W+A +F +K+P++ H WLP AHV+AP A Sbjct: 169 TSTGTLNFI-LMTLSSSPID-QTWSNNILWLACIMAFMVKMPLYGVHLWLPKAHVEAPIA 226 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 GS+ LA I+LK+GGYG +R L P+ ++Y A LSL +I S + + QTD+K L Sbjct: 227 GSMILAAILLKLGGYGMMRVSTLLDPV-TKYMAYPFILLSLWGMIMTSSICLRQTDLKSL 285 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 IAYSS++HM V I GAM M++HGL SS LF Y+R+H+R + Sbjct: 286 IAYSSVSHMALVITAIMIQTPWSFMGAMTLMIAHGLTSSLLFCLANTNYERIHSRTMIMA 345 Query: 363 GGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422 GL P A ++ ++AN+ LP T +GE ++ +S F S+ +L ++++++ Sbjct: 346 RGLQMVFPLMATWWIMASLANLALPPTINLVGELVITISTFSWSSPSIILLGTNILITSI 405 Query: 423 YSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLT 462 YS+++ G + L+ RE + + P+ +LT Sbjct: 406 YSIYMIITTQRG-KLTNHMNNLQPSHTRESTLMTLHILPLVLLT 448 >gi|292597188|gb|ADE33633.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|301298305|gb|ADK66538.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 198/359 (55%), Gaps = 9/359 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDL-YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPF 228 T GS+ +L A++ + +I+ L + P S MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNILLLTLTAQELPNSWANNLMWLAYTMAFMVKMPLYGL 212 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL P + LSL +I Sbjct: 213 HLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLV-LSLWGMIM 271 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 272 TSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLAN 331 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F SN Sbjct: 332 SNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWSNI 391 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +L ++++ALYSL+++ +G S + +K RE +++ PI +L++ Sbjct: 392 TLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLSL 449 >gi|167783359|gb|ACA00606.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP VII WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLVIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|177543464|gb|ACB73165.1| NADH dehydrogenase subunit 4 [Theropithecus gelada] gi|227122265|gb|ACP19638.1| NADH dehydrogenase subunit 4 [Theropithecus gelada] Length = 459 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 130/403 (32%), Positives = 208/403 (51%), Gaps = 13/403 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLS 131 S +L D ++ L++LT +L P I++S + Y+ + L+ +I F++ Sbjct: 53 STYLSSDPLTTPLLMLTAWLLPLMIMASQYHLCNEPPSQKKLYLSMMIFLQITLILTFMA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++++FYI FE +LIP +II WG +ER+ A F YT GS+ +L I++M K Sbjct: 113 TELIMFYILFETTLIPTLIIITKWGNQAERLNAGTYFLFYTLTGSLPLL--IMLMYTHNK 170 Query: 191 TSSI-IDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 T S+ I L ++ + + W+A +F K+P++ H WLP AHV+AP AGS+ Sbjct: 171 TGSLNITLLTLTDQKLTTTWSHNLTWLACMMAFMTKLPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R L PL ++Y A LSL +I S + + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRLTSILNPL-TEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + GA M++HGL SS F Y+R H+R + GL Sbjct: 290 SVSHMALVIVASLIQTPWSFSGATILMIAHGLTSSMYFCLANSNYERTHSRIMLLSRGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P + + N+ LP T IGE VI + F S +L ++++ALYSL Sbjct: 350 ILLPLMTFWWFMANLTNLALPPTINLIGELFVITASFSWSKITMILMGLNMLITALYSLH 409 Query: 427 LYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 ++ + G + + +K RE +++ T+ + P Sbjct: 410 MFVTMQRG-ALTHHMINMKPPFTRENTLMFMHLAPTILLSLNP 451 >gi|156077883|gb|ABU47388.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG SER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQSERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|23193681|gb|AAN14710.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFEA+LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFEATLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|40846609|gb|AAR92635.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|69064343|gb|AAZ02135.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71006852|dbj|BAE07229.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71007253|dbj|BAE07554.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71007331|dbj|BAE07632.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71007574|dbj|BAE07827.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71007933|dbj|BAE08100.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71008090|dbj|BAE08243.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71008642|dbj|BAE11118.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71009179|dbj|BAE11599.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71009270|dbj|BAE11690.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71010111|dbj|BAE12353.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71010277|dbj|BAE12483.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71010583|dbj|BAE12717.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71010732|dbj|BAE08555.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71011016|dbj|BAE08763.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71011091|dbj|BAE08828.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71011157|dbj|BAE08880.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71011523|dbj|BAE09218.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71011555|dbj|BAE09244.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71011568|dbj|BAE09257.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71012052|dbj|BAE09699.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71012423|dbj|BAE10050.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71012706|dbj|BAE10271.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71013026|dbj|BAE10531.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71013091|dbj|BAE10583.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71013121|dbj|BAE10609.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71013247|dbj|BAE10713.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71014037|dbj|BAE13081.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71014217|dbj|BAE13237.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71014347|dbj|BAE13367.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71014413|dbj|BAE13419.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71014466|dbj|BAE13458.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71014511|dbj|BAE13497.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71014570|dbj|BAE13536.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71014848|dbj|BAE13744.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71014952|dbj|BAE13848.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71015277|dbj|BAE14121.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71015915|dbj|BAE14641.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71017383|dbj|BAE15863.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|116257172|gb|ABJ90853.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|116257186|gb|ABJ90866.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|119035371|gb|ABL60524.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151334419|gb|ABR99222.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156458289|gb|ABU66734.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156458345|gb|ABU66786.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|167783541|gb|ACA00775.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|167783749|gb|ACA00968.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|167784028|gb|ACA01227.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171452559|dbj|BAG14545.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171452671|dbj|BAG14649.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171452839|dbj|BAG14805.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171453189|dbj|BAG15130.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171453609|dbj|BAG15520.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171453651|dbj|BAG15559.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|186911715|gb|ACC95029.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|189178886|dbj|BAG38729.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|189178928|dbj|BAG38768.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|189178984|dbj|BAG38820.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|189179096|dbj|BAG38924.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|189179320|dbj|BAG39132.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|189179530|dbj|BAG39327.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223008026|gb|ACM70255.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223008068|gb|ACM70294.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|224037006|gb|ACN37619.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|261411103|gb|ACX80896.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|301507216|gb|ADK76632.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|302320842|gb|ADL14811.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|302376519|gb|ADL30826.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|313251090|gb|ADR50396.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I AF + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMAFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|32348208|gb|AAP48084.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348222|gb|AAP48097.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891183|gb|AAO66705.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847533|gb|AAR93493.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848821|gb|AAR94689.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450878|gb|AAU02666.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71007086|dbj|BAE07411.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71008694|dbj|BAE11170.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71012210|dbj|BAE09855.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71015305|dbj|BAE14147.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|86450453|gb|ABC96406.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|116241643|gb|ABJ89209.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|133712378|gb|ABO37000.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|133712392|gb|ABO37013.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|133712406|gb|ABO37026.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|145967467|gb|ABP99097.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151332461|gb|ABR97404.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151332671|gb|ABR97599.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|213136881|gb|ACJ44213.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|218454727|gb|ACK77083.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223008124|gb|ACM70346.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|290758205|gb|ADD53144.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|290758569|gb|ADD53482.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|290758653|gb|ADD53560.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|301021703|gb|ADK47727.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|304556789|gb|ADM35769.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|307281103|gb|ADN41922.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|307281117|gb|ADN41935.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|307281131|gb|ADN41948.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP VII WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLVIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|156455301|gb|ABU64520.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 200/359 (55%), Gaps = 9/359 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDL-YAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPF 228 T GS+ +L A++ + +I+ L + P S MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNILLLTLTAQELPNSWANNLMWLAYTMAFMVKMPLYGL 212 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL +I Sbjct: 213 HLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGMIM 271 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 272 TSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLAN 331 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F SN Sbjct: 332 SNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWSNI 391 Query: 409 VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +L ++++ALYSL+++ +G S + +K RE +++ PI +L++ Sbjct: 392 TLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLSL 449 >gi|49256999|dbj|BAD24798.1| NADH dehydrogenase subunit 4 [Varanus komodoensis] Length = 457 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 185/335 (55%), Gaps = 12/335 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 + +D S L++L+ +L P ++S +++ R ++I L+ ++ F + ++ Sbjct: 57 MSIDQTSAPLLILSCWLLPLMAMASQNHLKQEPTVRKRTFLITITTLQVFLLLTFTANNL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +L YI FEA+LIP +II WG +ER+ A F YT S+ +L +I+ + T Sbjct: 117 MLLYISFEATLIPTLIIITRWGSQAERLKAGTYFMFYTLASSLPLLISILYLNSFSLTLL 176 Query: 194 IIDLYAMSKFPFSIQY----WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 + ++Y P +++ ++W +F IK+P++ FH WLP AHV+AP AGS+ LA Sbjct: 177 MPEIY--QNPPMTLKTLNGAFLWFGCLMAFMIKMPLYGFHLWLPKAHVEAPIAGSMVLAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LKMGGYG IR L L P P++ ++ II SL + Q D+K LIAYSS++ Sbjct: 235 ILLKMGGYGLIRILPHLTPNTPTLMFPLLT-MATWGIIMTSLTCLRQADLKSLIAYSSVS 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V I + G+ G+M M++HGL SS LF Y+R TR + A GL + Sbjct: 294 HMGLVISAILTQTNLGLTGSMLLMIAHGLTSSLLFCLANTNYERTQTRTMLAARGLHIIL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 P + + + ANM LP + +GE L+I S+F Sbjct: 354 PLMTLWWLYASFANMALPPSINLMGELLIITSLFS 388 >gi|37520573|ref|NP_923950.1| NAD(P)H-quinone oxidoreductase subunit M [Gloeobacter violaceus PCC 7421] gi|35211567|dbj|BAC88945.1| NADH dehydrogenase subunit 4 [Gloeobacter violaceus PCC 7421] Length = 504 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 144/435 (33%), Positives = 229/435 (52%), Gaps = 9/435 (2%) Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65 LS++ +LP +G +L + G +AL +T ++S + FD R Q + Sbjct: 2 LSVLIWLPVVGA--LLVGLWPGASAARLRSIALAFATAGVLWSAGLLWQFDPARPGLQFV 59 Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124 E+ WI Y LG DG+S+ L+ L + L I S+ S E R Y L+ Sbjct: 60 EFIPWIAPVGLHYSLGADGLSLPLIALNSLLIWIAIYSNAYS-GERPRLYYGLLLLAGGG 118 Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGSIFMLFAIV 183 + GAF + ++LLF++F+E L+P +++I +WG SE R YAA KF +YT +L A + Sbjct: 119 MAGAFAAQNLLLFFLFYELELLPFYLLIFLWGCSEKRGYAAMKFLIYTAVSGFLILGAFL 178 Query: 184 VMCWEKKTSSII-DLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 + +SS + + P Q + F IKIP+ P HTWLP+A+ +A Sbjct: 179 GLVLLDGSSSFAYGEQSTAALPLITQLILLTMLLVGFGIKIPLVPLHTWLPDAYCEASPP 238 Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302 ++ L G++ K+G YG +RF L LFP AP + + I +Y + ++ Q DIK++ Sbjct: 239 VAILLGGVLAKLGAYGLLRFGLGLFPETWALVAPGLATIGAITAVYGAFSAIAQRDIKRM 298 Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362 +AYSSI HMGY+ + + + GAM QM+SHGL+ + LF VGV+ ++ TRD+ Sbjct: 299 VAYSSIGHMGYILLAAAAATPLSLLGAMLQMVSHGLILAILFHLVGVVEAKVGTRDLDVL 358 Query: 363 GGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419 GL + +P + ++++ MA+ G+PG GF+ EFLV+ F +L L Sbjct: 359 NGLMNPIRGLPMVSALLVLGGMASAGIPGLVGFVAEFLVLQGSFAAFPVQTILCVVCSGL 418 Query: 420 SALYSLWLYRKVVFG 434 +A+Y + L + FG Sbjct: 419 TAVYFVILLNRTCFG 433 >gi|82493246|gb|ABB78815.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|82493260|gb|ABB78828.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|82493274|gb|ABB78841.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|82493288|gb|ABB78854.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|82493302|gb|ABB78867.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151331973|gb|ABR96951.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|166836108|gb|ABY90237.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG SER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQSERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|83779551|gb|ABC47599.1| NADH dehydrogenase subunit 4 [Vampyressa thyone] gi|83779555|gb|ABC47602.1| NADH dehydrogenase subunit 4 [Vampyressa thyone] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 111/322 (34%), Positives = 184/322 (57%), Gaps = 10/322 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ ++L+ ++ F + ++++FYI FEA+L+P +II WG +ER+ A F Y Sbjct: 93 KSYITMLVLLQVFLVMTFTATELIMFYILFEATLLPTLIIITRWGNQAERLNAGLYFLFY 152 Query: 171 TFFGSIFMLFAIV-VMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPM 225 T GS+ +L A++ + + ++ Y ++ P + W +W+A +F +K+P+ Sbjct: 153 TLVGSLPLLIALIYIQNLTGTLNFLLTQYWITPLPAT---WSTTLLWLACMMAFMVKMPL 209 Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIA 285 + H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + + A LSL Sbjct: 210 YGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITILLEPL-TDFMAYPFMMLSLWG 268 Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFF 345 +I S + + QTD+K LIAYSS++HM V + GA M++HGL SS LF Sbjct: 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIAAVLIQTPWSFMGATALMIAHGLTSSMLFC 328 Query: 346 CVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN 405 Y+R+H+R + GL +P A ++ ++ N+ LP T IGE ++M++F Sbjct: 329 LANSNYERVHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELFIVMAMFSW 388 Query: 406 SNTVAVLASFGVVLSALYSLWL 427 S+ VL ++L+ LYSL++ Sbjct: 389 SHLSIVLLGLNIILTGLYSLYM 410 >gi|302377219|gb|ADL31476.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 136/402 (33%), Positives = 219/402 (54%), Gaps = 17/402 (4%) Query: 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFL 130 CS D ++ L +LTT+L P I++S + + + Y+ + L+ +I F Sbjct: 52 CSPTFSSDPLTTPLXMLTTWLLPLTIMASQRHLSSEPLSRKKLYLSMLISLQISLIMTFT 111 Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 + ++++FYIFFE +LIP II WG ER+ A F YT GS+ +L A++ Sbjct: 112 ATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTL 171 Query: 190 KTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSV 245 + +I+ L ++ S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 172 GSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSM 229 Query: 246 FLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305 LA ++ K+GGYG +R L L PL +++ A LSL +I S + + QTD+K LIAY Sbjct: 230 VLAAVLXKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAY 288 Query: 306 SSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGL 365 SSI+HM V I GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 289 SSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGL 348 Query: 366 VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ ++AN+ LP T +GE V+++ F SN +L ++++ALYSL Sbjct: 349 QTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWSNITLLLTGLNMLVTALYSL 408 Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +++ +G S + +K RE +++ PI +L++ Sbjct: 409 YMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLSL 449 >gi|156878380|ref|YP_001434510.1| NADH dehydrogenase subunit 4 [Pantherophis slowinskii] gi|94537527|gb|ABF29856.1| NADH dehydrogenase subunit 4 [Pantherophis slowinskii] Length = 445 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 193/365 (52%), Gaps = 7/365 (1%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLS 131 S +L +D S L+ L+ +L P IL+S K + R ++ ++L+ + F++ Sbjct: 47 SMYLHLDPTSAPLLSLSYWLLPMTILASQHTMIKEPMQRQRTFLTTLIMLQLFISLTFMA 106 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 ++ L YI FEA+LIP +II WG +ER+ A F LYT S+ +L I+ + Sbjct: 107 SNLTLMYIMFEATLIPTLIIITRWGQQTERLTAGTYFMLYTLMTSMPLLMTILFLNNMTN 166 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 T ++ P++ + +W+A +F K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 167 TPTLFMQTMQPTSPWT-ELTLWVACLGAFLAKMPIYGLHLWLPKAHVEAPIAGSMVLAAI 225 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L + + F P I LSL A+L + QTD+K LIAYSSI+H Sbjct: 226 LLKLGGYGIIRMMQILPTMKTDLFLPFIV-LSLWGATLANLTCLQQTDLKSLIAYSSISH 284 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V + + + GAM M++HG SSALF Y+R TR + G + +P Sbjct: 285 MGLVIAAVMIQTQWSLSGAMALMIAHGFTSSALFCLANTTYERTKTRIMVLTRGFHNILP 344 Query: 371 RYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRK 430 ++ + N+ P T F GE L+ S+F ++ ++++A YSL ++ Sbjct: 345 MLTTWWLLINLMNIATPPTMNFTGELLIASSLFNWCPMTIIMFGLSMLITASYSLHMFLS 404 Query: 431 VVFGV 435 G Sbjct: 405 TQTGT 409 >gi|115494897|ref|YP_778678.1| NADH dehydrogenase subunit 4 [Rusa unicolor swinhoei] gi|114329513|gb|ABI64277.1| NADH dehydrogenase subunit 4 [Rusa unicolor swinhoei] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 201/363 (55%), Gaps = 28/363 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSI-QENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + +EN + Y+ ++L+ +I F +++++ F Sbjct: 59 DSLSTPLLILTMWLLPLMLMASQHHLSKENLTRKKLYITMLILLQLFLIMTFTAMELIFF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A+V + + T S+ Sbjct: 119 YILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALVYL--QNITGSLNF 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L +QYW MW+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------LQYWVQPLSNSWSNVFMWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA I+LK+GGYG +R L PL +++ A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAILLKLGGYGMLRITTFLNPL-TEFMAYPFIMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + I GA M++HGL SS LF Y+R+ +R + G Sbjct: 288 YSSVSHMALVIVAILIQTPWSYMGATALMVAHGLTSSMLFCLANFKYERIPSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L P A ++ ++ N+ LP T IGE V+ S F SN +L +V++ALYS Sbjct: 348 LQTFFPLMAPWWLLASLNNLALPPTINLIGELFVVKSSFSWSNITIILKGVNMVITALYS 407 Query: 425 LWL 427 L++ Sbjct: 408 LYM 410 >gi|188039022|ref|YP_001905905.1| NADH dehydrogenase subunit 4 [Ophiura albida] gi|183013989|emb|CAL50582.1| NADH dehydrogenase subunit 4 [Ophiura albida] Length = 453 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 205/362 (56%), Gaps = 13/362 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLS 131 S L +D IS LVVL+ +L P I++S S+ N R +++ L++ +I F + Sbjct: 54 SLSLTLDSISTPLVVLSCWLIPVSIMASINSLSPNSINNQRSFILYNLIILMALIVTFST 113 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++F+I FEA+LIP ++I WG ERI A+Y F YT S+ +L ++ + Sbjct: 114 SSLIIFFIAFEATLIPTLLLISRWGMQKERIEASYYFLFYTLISSLPLLIGLITIYNSNY 173 Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFC--SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 +S+I S + S+ + FC +F +K+P+F FH WLP AHV+AP AGS+ LA Sbjct: 174 NTSLIS----SNWNPSLIVSPTLTIFCILAFLVKVPIFTFHLWLPKAHVEAPVAGSMILA 229 Query: 249 GIMLKMGGYGCIRFLLPLFP-LASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 I+LKMGGYG IR + L S + +IFF I+ SL+ + QTD+K LIAYSS Sbjct: 230 AILLKMGGYGFIRIYGFFWESLTSNVSSALIFFCCWGGIL-TSLICITQTDLKSLIAYSS 288 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM ++ GI +G + G++ ++ M++HG+VSSALF + Y+R TR + L Sbjct: 289 VSHMSFMIAGISTGTEWGLKASIIIMIAHGIVSSALFALANIFYERSGTRILLVNRSLKS 348 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 + + + F AN+GLP +GE L S+ S + + G+V ++++SL + Sbjct: 349 IVSLLPLFWLTFAAANLGLPPLPNAMGEILSFTSILNWSLISYLPIAAGIVFTSIFSLSI 408 Query: 428 YR 429 Y+ Sbjct: 409 YQ 410 >gi|156618645|gb|ABU88135.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/361 (34%), Positives = 198/361 (54%), Gaps = 12/361 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL--QSS 170 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ L W +W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 MGSLNLLTTNLWLKEMPNSWSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRITMFLDPTTKSMTYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 290 SVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL+ Sbjct: 350 TLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITIILIGLNMLITALYSLY 409 Query: 427 L 427 + Sbjct: 410 M 410 >gi|152925791|gb|ABS32115.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925816|gb|ABS32135.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925826|gb|ABS32143.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925836|gb|ABS32151.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925841|gb|ABS32155.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925856|gb|ABS32167.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 196/355 (55%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + FR+ Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMVMASQNHLAKEPWFRKKSYLSLLITLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + S+ Sbjct: 119 YILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL--QSSMGSLNL 176 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L W +W+A +F IK+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LTTNLWLKDMPNSWSTNLLWLACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITMFLDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLYM 410 >gi|82493176|gb|ABB78750.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG SER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQSERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|3122529|sp|Q34949|NU4M_LUMTE RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|984300|gb|AAC46873.1| NADH dehydrogenase subunit 4 [Lumbricus terrestris] gi|1584068|prf||2122275K NADH dehydrogenase:SUBUNIT=4 Length = 452 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 131/393 (33%), Positives = 216/393 (54%), Gaps = 11/393 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQENF--REYMIAFLVLESMVIGAFLSLDML 135 ++ D +S L LT ++T IL+S K + N + +M ++L ++I FLS +++ Sbjct: 52 YMSSDMMSFTLSALTIWVTVMMILASTKIMHLNMYPKMFMTNLVILLIILINCFLSPNLI 111 Query: 136 LFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI+FEASLIP V+I WG ER A+ +YT S+ ML + + KT+ + Sbjct: 112 MFYIWFEASLIPTMVLIMTWGYQPERSQASMYLMIYTVAASLPMLMVLCKIFIVSKTA-M 170 Query: 195 IDLYAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + ++ +FP + W+ F +K+PMF H WLP AHV+AP AGS+ LA I+L Sbjct: 171 MPMFMNMEFPMDYPSMALAWVLTLGGFLVKLPMFTVHLWLPKAHVEAPIAGSMILAAILL 230 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R +L LF ++ + ++ ++L+ + SL+ + Q+D+K LIAYSS+ HMG Sbjct: 231 KLGGYGILR-MLSLFHYMAKSTSSLLSSVALVGAVSTSLICLRQSDLKSLIAYSSVGHMG 289 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 + G G + A+ M++HGL SSALF + Y+ HTR +F GL+ P Sbjct: 290 LMVAGALMSSNWGFQAALAMMIAHGLSSSALFVMANMNYELTHTRSLFLMKGLLVLAPTL 349 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + +FT +NM P + + E ++I S+ + S + +L +A Y L++Y + Sbjct: 350 TMWWFLFTASNMAAPPSINLLSEIMLITSILKMSTSAFILLGLTSFFTAAYCLYMYTSMH 409 Query: 433 FG--VSKCEKVQQ--LKDLSLRERCMVYPIAVL 461 G + + Q +KDL+L +V I ++ Sbjct: 410 HGPLMLTSNPIPQFKVKDLTLMTMHLVPTILII 442 >gi|95104642|gb|ABF51594.1| NADH dehydrogenase subunit 4 [Colobus angolensis] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 136/447 (30%), Positives = 232/447 (51%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T + SL F++ S+ I+Y S +L D ++ ++LT + P Sbjct: 25 INLTTHGLMISLIPLLFFNQANSNL--------INY--STYLSSDPLTTPFLMLTAWFLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 F I++S + + Y+ + L+ +I F++ +++LFYI FE +LIP +II Sbjct: 75 FMIMASQYHLHNESPSRKKLYLSMMIFLQISLIMTFMATELILFYILFETTLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYW 210 WG +ER+ A F YT GS+ +L ++ + + + +I+ L ++ S Sbjct: 135 RWGIQAERLNAGTYFLFYTLTGSLPLLIMLLYIYNDLGSLNIMLLTLTAQKLTSTWSHNL 194 Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L P+ Sbjct: 195 LWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 ++Y A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMIAHGLTSSMLFCLANSNYERTHSRIMMLPRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+ + F S+ +L ++++ALYSL ++ G + + +K R Sbjct: 374 NLMGELLVVTTSFSWSHITIMLTGLNMLITALYSLHIFITTQRG-TLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVLT----VFFGIYP 469 E +++ PI +L+ + G+ P Sbjct: 433 ENMLMFMHLSPIILLSLNPMIIMGLTP 459 >gi|13272916|gb|AAK17541.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347078|gb|AAK17710.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193969|gb|AAN14974.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690458|gb|AAO88341.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848359|gb|AAR94260.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|69063279|gb|AAZ01147.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|69063293|gb|AAZ01160.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|69064665|gb|AAZ02434.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|82493134|gb|ABB78711.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|82493148|gb|ABB78724.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|82493162|gb|ABB78737.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|82493190|gb|ABB78763.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|82493204|gb|ABB78776.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|82493218|gb|ABB78789.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|82493232|gb|ABB78802.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|94980518|gb|ABF48804.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|94980574|gb|ABF48856.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|94980798|gb|ABF49064.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|94980952|gb|ABF49207.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|94980994|gb|ABF49246.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|94981078|gb|ABF49324.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|94981148|gb|ABF49389.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|116831702|gb|ABK28813.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|148767748|gb|ABR10819.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151328744|gb|ABR93953.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151328925|gb|ABR94121.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151329023|gb|ABR94212.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151329204|gb|ABR94380.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151329218|gb|ABR94393.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151329316|gb|ABR94484.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151329344|gb|ABR94510.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151330239|gb|ABR95341.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151331204|gb|ABR96237.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151331525|gb|ABR96535.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151331875|gb|ABR96860.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151332657|gb|ABR97586.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151333090|gb|ABR97988.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077239|gb|ABU46790.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077267|gb|ABU46816.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077309|gb|ABU46855.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077463|gb|ABU46998.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077491|gb|ABU47024.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077519|gb|ABU47050.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077533|gb|ABU47063.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077729|gb|ABU47245.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077743|gb|ABU47258.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077757|gb|ABU47271.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077771|gb|ABU47284.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077785|gb|ABU47297.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077799|gb|ABU47310.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077813|gb|ABU47323.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077827|gb|ABU47336.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077841|gb|ABU47349.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077855|gb|ABU47362.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077869|gb|ABU47375.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077897|gb|ABU47401.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077911|gb|ABU47414.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077939|gb|ABU47440.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|163659825|gb|ABY28413.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|166836122|gb|ABY90250.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171674977|gb|ACB48361.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171675341|gb|ACB48699.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171675831|gb|ACB49154.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171675985|gb|ACB49297.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|237652597|gb|ACR08888.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|237652611|gb|ACR08901.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|237652625|gb|ACR08914.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|237652639|gb|ACR08927.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|237652653|gb|ACR08940.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|237652667|gb|ACR08953.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|237652681|gb|ACR08966.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|237652695|gb|ACR08979.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|295856836|gb|ADG46890.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|325975798|gb|ADZ47936.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG SER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQSERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|108742881|gb|ABG02049.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 128/393 (32%), Positives = 209/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + + Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +E + A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITGWGTQTEGLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +S+ S+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MIMLSQNLPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP +GE VIM+ F SN ++ V+++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPFINLVGELFVIMTSFSWSNLTIIMTGLNVLITALYSLYMLTMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +LT+ Sbjct: 418 -KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|57854651|ref|YP_187597.1| NADH dehydrogenase subunit 4 [Astropecten polyacanthus] gi|57506717|dbj|BAD86705.1| NADH dehydrogenase subunit 4 [Astropecten polyacanthus] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 203/363 (55%), Gaps = 14/363 (3%) Query: 80 GVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYM-IAFLVLESMVIGAFLSLDM 134 D +S L++L+ +L P +L+S +I + N R + + F++L ++VI F +LD+ Sbjct: 58 ATDSLSSPLIILSCWLVPISLLASINTISKQNTMNQRIFTSLIFIILTALVI-TFSALDL 116 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 LFYI FE S IP +I WG ER A+ F YT GS+ +L A++ + + + Sbjct: 117 SLFYIAFETSPIPTLSLISRWGAQKERFQASVYFLFYTLAGSLPLLIALISI-FSSNNTL 175 Query: 194 IIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 ++ L + S + W++ +F IK+P++ FH WLP AHV+AP AGS+ LA Sbjct: 176 LLPLVTSIETNLSPHIVLSSIWWLSCLLAFVIKMPVYGFHLWLPKAHVEAPIAGSMILAA 235 Query: 250 IMLKMGGYGCIRFLLPLF-PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG R + F P AS P+ F L + S++ + QTD+K LIAYSS+ Sbjct: 236 ILLKLGGYGLSRTITIFFLPSASFLSFPLTIF-CLWGSLITSIICLRQTDLKALIAYSSV 294 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 HM V GIFS G+ GA+ M++HGL+SSALF ++Y+R TR + G Sbjct: 295 GHMSMVASGIFSLSIWGINGALTLMVAHGLISSALFCLANLLYERNSTRTLIISRGFKII 354 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P +V ++ ++N+GLP T +GE L+I ++ + L + + SA+YSL ++ Sbjct: 355 TPLLSVWWLITCVSNLGLPPTPNLLGELLIISAIIDWNVLSFPLVTTATIFSAIYSLMIF 414 Query: 429 RKV 431 V Sbjct: 415 SNV 417 >gi|156618650|gb|ABU88139.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/361 (34%), Positives = 198/361 (54%), Gaps = 12/361 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL--QSS 170 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ L W +W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 MGSLNLLTTNLWLKEMPNSWSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRITMFLDPTTKSMTYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 290 SVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLR 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL+ Sbjct: 350 TLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITIILIGLNMLITALYSLY 409 Query: 427 L 427 + Sbjct: 410 M 410 >gi|47777262|ref|YP_022510.1| NADH dehydrogenase subunit 4 [Buergeria buergeri] gi|47604878|dbj|BAD20560.1| NADH dehydrogenase subunit 4 [Buergeria buergeri] Length = 455 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/382 (31%), Positives = 208/382 (54%), Gaps = 9/382 (2%) Query: 81 VDGISILLVVLTTFLTPFCILSSWK--SIQENFRE--YMIAFLVLESMVIGAFLSLDMLL 136 +D S L +LT +L P +++S S++ ++R+ Y+ L+ M + AF + D+++ Sbjct: 57 IDHTSSALSILTCWLFPLTLIASQSKISLEPHYRQRIYIANSTFLQLMTLLAFTTADLMM 116 Query: 137 FYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVM--CWEKKTSS 193 F+IFFEASLIP +II WG ER + A YT G++ ++ ++ + + Sbjct: 117 FFIFFEASLIPTIIIITRWGAQERRMEAGMYLAFYTMLGAVPLMICLIKFYSAYGSLLPT 176 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 ++ A+ + S +W A +F +K+P+F H WLP AHV+AP AGS+ LAG +LK Sbjct: 177 LLSNEALKEIYISHPGLLWTACNMAFLVKLPLFFLHLWLPKAHVEAPIAGSMVLAGTLLK 236 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R + PL Y+A + F++++ ++ +L+ + QTD+K LIA SS++HM Sbjct: 237 LGGYGILR-MSPLIGENMVYYAYPMMFIAILGVLATALLCLRQTDLKSLIAMSSVSHMNL 295 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V + GA+ M+SHG SSALF +Y+R ++R + G P A Sbjct: 296 VVTAVLIQSPWAYSGALVLMISHGFTSSALFCLANTVYERTNSRAMVLLRGATVAFPLAA 355 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVF 433 ++ + N+ +P T F+GEFL++ S+F S+T ++ ++ + YSL++ Sbjct: 356 AWWLIVIIQNIAIPPTISFVGEFLIMASLFSWSSTAFLVVVLNLMFTTAYSLYVLWATQR 415 Query: 434 GVSKCEKVQQLKDLSLRERCMV 455 G ++ L +RE ++ Sbjct: 416 G-PLPHHIKSLHPFQVREHTLL 436 >gi|315142033|gb|ADT81996.1| NADH dehydrogenase subunit 4L [Hylobates agilis] Length = 459 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 190/345 (55%), Gaps = 7/345 (2%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FY+ FEA+LIP +II WG ER+ A F Y Sbjct: 93 KLYLSMLITLQVSLIMTFTATELMMFYVLFEATLIPTLIIITRWGNQPERLNAGSYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFP 227 T GS+ +L A+V S I L +S + + MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALV-HTHNTLGSLNITLLTLSSQNLTDSWSNNLMWLAYMMAFMVKMPLYG 211 Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL +I Sbjct: 212 LHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLMLSLWGMI 270 Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347 S + + QTD+K LIAYSS++HM V I GA M++HGL SS LF Sbjct: 271 MTSSICLRQTDLKSLIAYSSVSHMALVITAILIQTPWSFTGATVLMIAHGLTSSLLFCLA 330 Query: 348 GVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN 407 Y+R H+R + GL +P A + ++AN+ LP T +GE V+M+ F +N Sbjct: 331 NSNYERTHSRIMILSRGLQALLPLMAFWWLAASLANLALPPTINLLGELFVLMASFSWAN 390 Query: 408 TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 T +L V+++ALYSL+++ G + ++ +K RE Sbjct: 391 TTIMLTGLNVLITALYSLYMFIMTQRG-TPTHHIKNMKPSLTREN 434 >gi|17648142|ref|NP_008130.2|ND4_10421 NADH dehydrogenase subunit 4 [Paracentrotus lividus] Length = 463 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 139/402 (34%), Positives = 217/402 (53%), Gaps = 24/402 (5%) Query: 69 HWID--YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLE 122 HW + S L D IS L+ L+ +L P +++S +I + N R ++I + + Sbjct: 46 HWSAPWHNLSNILASDSISAPLIALSCWLAPISLIASNNTISKQSELNQRTFIIIVIFIA 105 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFA 181 +I F +L++LLFY+ FE +LIP ++I WG ER A F YT FGS+ +L + Sbjct: 106 GALIITFSALELLLFYVAFETTLIPTLILITRWGAQMERFQAGLYFMFYTLFGSLPLLIS 165 Query: 182 IVVMCWEKKTSSIID---LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + + SI + ++ S+ ++ W W +F IK+P++ FH WLP AHV+ Sbjct: 166 LIAIYISSSSLSIPNVELIWTPSETMETLNIW-WALSIIAFLIKMPIYGFHLWLPKAHVE 224 Query: 239 APTAGSVFLAGIMLKMGGYGCIRF--LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 AP AGS+ LA I+LK+GGYG IR L L S A +I F S A++ S++ + Q Sbjct: 225 APVAGSMILAAILLKLGGYGLIRLINLFATISLNSLSLA-LITFCSWGALV-TSIICVRQ 282 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K LIAYSS+ HM V IFS G GA+ M+++GLVSS LF +Y+R T Sbjct: 283 TDLKALIAYSSVGHMSIVAAAIFSSTNWGTNGALILMIAYGLVSSDLFSLANTVYERSGT 342 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R + GL +P + +V + AN+GLP + IGE L++ S+ S + + Sbjct: 343 RTLAITRGLKTILPLSTLWWLVMSAANLGLPPSPNLIGEILILSSLIAWSIWLFPIIGLA 402 Query: 417 VVLSALYSLWLYRKVVFGVSKC-EKVQQLKDLSL---RERCM 454 + A+YSL ++F +S+ + ++SL RE + Sbjct: 403 TIFGAIYSL-----MIFQLSQQGTPTNNINNISLSFSREHLL 439 >gi|171453371|dbj|BAG15299.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I AF + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMAFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|222052088|dbj|BAH15602.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|222052242|dbj|BAH15745.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|222052410|dbj|BAH15901.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 460 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I AF + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMAFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|144583607|gb|ABP01504.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|144583612|gb|ABP01508.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|144583617|gb|ABP01512.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|144583622|gb|ABP01516.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|144583627|gb|ABP01520.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|144583632|gb|ABP01524.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|144583642|gb|ABP01532.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|144583647|gb|ABP01536.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|144583652|gb|ABP01540.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/361 (34%), Positives = 198/361 (54%), Gaps = 12/361 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL--QSS 170 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ L W +W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 MGSLNLLTTNLWLKGMPNSWSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRITMFLDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 290 SVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL+ Sbjct: 350 TLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLY 409 Query: 427 L 427 + Sbjct: 410 M 410 >gi|295641225|gb|ADG22764.1| NADH dehydrogenase subunit 4 [Melogale moschata] Length = 459 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/388 (32%), Positives = 208/388 (53%), Gaps = 29/388 (7%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P +++S + + + Y+ +L+ ++I F + ++++F Sbjct: 59 DPLSAPLLALTMWLLPLMLMASQHHLSKETLPRKKLYITMLAMLQLLLIVTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+L+P +II WG +ER+ A F YT GS+ +L A++ + + K ++ Sbjct: 119 YILFEATLLPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLIALLWL--QNKLGTLNL 176 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 L IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 177 LV--------IQYWAQPLPDSWSNILLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L PL + + A LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITMLLNPL-TNFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQSPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++ N+ LP T +GE V+M+ F SN +L ++++ALYS Sbjct: 348 LQMLLPLMAAWWLLASLTNLALPPTINLVGELFVVMASFSWSNITIILMGINIIITALYS 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRER 452 L++ G ++ +K RE Sbjct: 408 LYMLITTQRG-KYTHHIKNIKPSFTREN 434 >gi|302632648|ref|YP_003848743.1| NADH dehydrogenase subunit 4 [Crotalus horridus] gi|302151289|gb|ADK97525.1| NADH dehydrogenase subunit 4 [Crotalus horridus] Length = 406 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/353 (34%), Positives = 191/353 (54%), Gaps = 9/353 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDM 134 + D IS L+ L+ +L P ++S ++ + R ++ +L+ + F++ ++ Sbjct: 50 MNTDPISAPLISLSYWLLPLMTIASQHTMTKEPLQRQRTFLATLTLLQLFISMTFMASNL 109 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 L YI FEA+LIP +II WG +ER+ A F LYT S+ +L I+++ T + Sbjct: 110 TLMYIMFEATLIPTLIIITRWGQQTERLTAGTYFILYTLTTSLPLLMVIILINNSTNTPT 169 Query: 194 I-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + + L S+ +W+A +F K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 170 LFLQLLCPPNQWTSLL--LWLASLTAFLAKMPIYGLHLWLPKAHVEAPIAGSMVLAAILL 227 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG IR ++ F P I L+L A+L + QTD+K LIAYSSI+HMG Sbjct: 228 KLGGYGIIRLMIEFPRRHGGLFLPFII-LALWGATLANLTCLQQTDLKALIAYSSISHMG 286 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I G+ GAM M++HG SSALF Y+R HTR + GL + +P Sbjct: 287 LVVAAIIIQTPWGLSGAMALMIAHGFTSSALFCLANTTYERTHTRILILTRGLHNILPMA 346 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +V + N+ +P + F GE L++ ++F T ++ ++++A YSL Sbjct: 347 TTWWLVTNLMNIAIPPSMNFTGELLIMSALFNWCPTTIIMLGLSMLITASYSL 399 >gi|144583637|gb|ABP01528.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/361 (34%), Positives = 198/361 (54%), Gaps = 12/361 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLS 131 S + D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + Sbjct: 53 SLNFSSDPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTA 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 113 TELILFYILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALIYL--QSS 170 Query: 191 TSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 S+ L W +W+A +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 MGSLNLLTTNLWLKGMPNSWSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMV 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGMMRITMFLDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYS 289 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HM V + I GA M++HGL SS LF Y+R+H+R + GL Sbjct: 290 SVSHMALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQ 349 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW 426 +P A ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL+ Sbjct: 350 TLLPLMATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLY 409 Query: 427 L 427 + Sbjct: 410 M 410 >gi|62241237|dbj|BAD93663.1| NADH dehydrogenase subunit 4 [Branchiostoma lanceolatum] Length = 452 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/380 (33%), Positives = 208/380 (54%), Gaps = 9/380 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGA----FLSLDMLLF 137 D +S+ L VL+ +L P +++S + + Y F+V + + GA FL+ D+LLF Sbjct: 58 DFMSVGLTVLSIWLLPLMLIASQRHMVSESMLYQRVFIVCQVFLTGALVLAFLASDLLLF 117 Query: 138 YIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY-TFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++L+P ++I WG + Y A +F++ T GS+ +L +V + + Sbjct: 118 YIAFESTLLPTLMLITRWGAQKERYQAGTYFMFFTLVGSLPLLVCLVGQYQLNGSLAFNT 177 Query: 197 LYA-MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMG 255 +Y+ + + +W W+ +F +K+P++ H WLP AHV+AP AGS+ LAG++LK+G Sbjct: 178 IYSGFGNSNYLVNFW-WLGCILAFLVKLPLYGAHLWLPKAHVEAPIAGSMVLAGVLLKLG 236 Query: 256 GYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVT 315 GYG +R P A+ + V+ L+L + + + QTD+K LIAYSS+ HM V Sbjct: 237 GYGMMRVSYMWGP-AAMLSSEVVLGLALWGMASMGAICLRQTDLKSLIAYSSVGHMALVV 295 Query: 316 IGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 GI +G G GAM M++HGLVSS LF Y+R TR++ G++ P + Sbjct: 296 GGIMTGTVWGYNGAMILMIAHGLVSSCLFSLANFWYERSGTRNLVGSRGVIMLFPLMGLG 355 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGV 435 + ++ N+ LP GE + +++V+ S VL S G VL+A YSL+++ +G Sbjct: 356 WLSMSLMNLALPPAINLFGELISMVAVYNWSTYSIVLMSLGAVLTAGYSLYMFGMSQWG- 414 Query: 436 SKCEKVQQLKDLSLRERCMV 455 + + L ++ RE +V Sbjct: 415 DTMKTYKNLYVMTSREYLLV 434 >gi|225166399|ref|ZP_03728065.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] gi|224799359|gb|EEG17920.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] Length = 409 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/389 (31%), Positives = 207/389 (53%), Gaps = 36/389 (9%) Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG------GSERI----YAAY 165 I FL ++ +G FL+ D L+++F+E SL P F + ++G G R AAY Sbjct: 10 ILFLTIQGAALGVFLAQDFFLWFLFWELSLFPAFFLTKLYGNDTDSNGDTRPGNASRAAY 69 Query: 166 KFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY-----------AMSKFPFSIQYWMWIA 214 +F +YT GS FML + + T + +L ++ ++ ++ Sbjct: 70 QFVIYTMGGSAFMLLSFAAIYAVTGTLNFEELQFHLFSSDKLADKLAAVSPALPMLVFFG 129 Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYF 274 A+K+P+FPFHTWLP+A+ APT S+FL IM KMG YG IR L +FP+ Sbjct: 130 VLLGLAVKVPLFPFHTWLPSAYAAAPTGASIFLTAIMSKMGLYGFIRILWSIFPIELIIT 189 Query: 275 APVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS-------------G 321 AP++ + +L +++ + ++ Q D+K++IAYSSI H+GY + F+ Sbjct: 190 APILIWFALAGVVFGAFAALRQRDLKRMIAYSSINHLGYCLLAFFAFVIAADHLPSTSQT 249 Query: 322 MKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT-RDIFAYGGLVHNMPRYAVVMMVFT 380 + + G + QM +HGL ++ALF+C+G++ +R R + +GG+ P +A + Sbjct: 250 FTAALTGMILQMFNHGLSAAALFYCIGILENRTGGLRGMGDFGGVRKVAPIFAAFCGISM 309 Query: 381 MANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEK 440 +++GLPG +GF+GEFL+ VF + VA +A+ G++ +AL+ L +++V G Sbjct: 310 FSSLGLPGLNGFVGEFLIFRGVFGAAPVVAAIATLGLLATALFLLTFWQRVFHG-PVTPN 368 Query: 441 VQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 Q++ DL+ E + P VL G+ P Sbjct: 369 AQRVTDLTATEILTLAPAIVLMFVLGLAP 397 >gi|301353297|ref|YP_003795370.1| NADH dehydrogenase subunit 4 [Anilius scytale] gi|226446136|gb|ACO58430.1| NADH dehydrogenase subunit 4 [Anilius scytale] Length = 451 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 196/371 (52%), Gaps = 25/371 (6%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 H+ +D IS L+V++ +L P IL+S K+I + R +M +VL+ + F + + Sbjct: 55 HMNLDPISAPLLVMSFWLLPLTILASQKTISSEPTQRQRTFMTTLMVLQMFISMTFAASN 114 Query: 134 MLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 + + YI FEA+LIP ++I WG ER+ A F +YT S+ +L AI+ + + T Sbjct: 115 LTMMYIMFEATLIPTLILITRWGQQPERLTAGTYFIMYTLATSMPLLMAILFLNNKSNTP 174 Query: 193 SIIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 + + M+ P + +W+A +F K+P++ H WLP AHV+AP AGS+ LA I Sbjct: 175 TP---FFMTMEPHTAWTTLLLWLACLTAFFAKMPLYGLHLWLPKAHVEAPIAGSMVLAAI 231 Query: 251 MLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAH 310 +LK+GGYG IR + L + F P + LSL I A+L + QTD+K LIAYSS++H Sbjct: 232 LLKLGGYGIIRIMQVLPTSKTDLFMPFLI-LSLWGAILANLTCLQQTDLKSLIAYSSVSH 290 Query: 311 MGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMP 370 MG V + GAM M++HG SS LF + Y+R HTR + G HN Sbjct: 291 MGLVIAATMIQTPWALSGAMALMIAHGFTSSMLFCLANINYERTHTRILILTRGF-HN-- 347 Query: 371 RYAVVMMVFTM-------ANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 +M++ TM N+ P + F E L+ ++F T +L ++++A Y Sbjct: 348 ----IMLLMTMWWLGANLMNIAFPPSMNFTAELLITSALFNWCPTTIILLGMSILITASY 403 Query: 424 SLWLYRKVVFG 434 L ++ G Sbjct: 404 PLHMFLSTQAG 414 >gi|7322051|gb|AAA68142.2| NADH dehydrogenase subunit 4 [Paracentrotus lividus] Length = 464 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 139/402 (34%), Positives = 217/402 (53%), Gaps = 24/402 (5%) Query: 69 HWID--YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLE 122 HW + S L D IS L+ L+ +L P +++S +I + N R ++I + + Sbjct: 47 HWSAPWHNLSNILASDSISAPLIALSCWLAPISLIASNNTISKQSELNQRTFIIIVIFIA 106 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFA 181 +I F +L++LLFY+ FE +LIP ++I WG ER A F YT FGS+ +L + Sbjct: 107 GALIITFSALELLLFYVAFETTLIPTLILITRWGAQMERFQAGLYFMFYTLFGSLPLLIS 166 Query: 182 IVVMCWEKKTSSIID---LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + + SI + ++ S+ ++ W W +F IK+P++ FH WLP AHV+ Sbjct: 167 LIAIYISSSSLSIPNVELIWTPSETMETLNIW-WALSIIAFLIKMPIYGFHLWLPKAHVE 225 Query: 239 APTAGSVFLAGIMLKMGGYGCIRF--LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 AP AGS+ LA I+LK+GGYG IR L L S A +I F S A++ S++ + Q Sbjct: 226 APVAGSMILAAILLKLGGYGLIRLINLFATISLNSLSLA-LITFCSWGALV-TSIICVRQ 283 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K LIAYSS+ HM V IFS G GA+ M+++GLVSS LF +Y+R T Sbjct: 284 TDLKALIAYSSVGHMSIVAAAIFSSTNWGTNGALILMIAYGLVSSDLFSLANTVYERSGT 343 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R + GL +P + +V + AN+GLP + IGE L++ S+ S + + Sbjct: 344 RTLAITRGLKTILPLSTLWWLVMSAANLGLPPSPNLIGEILILSSLIAWSIWLFPIIGLA 403 Query: 417 VVLSALYSLWLYRKVVFGVSKC-EKVQQLKDLSL---RERCM 454 + A+YSL ++F +S+ + ++SL RE + Sbjct: 404 TIFGAIYSL-----MIFQLSQQGTPTNNINNISLSFSREHLL 440 >gi|238866942|ref|YP_002929421.1| NADH dehydrogenase subunit 4 [Elaphe poryphyracea] gi|238626013|gb|ACR48296.1| NADH dehydrogenase subunit 4 [Elaphe poryphyracea] Length = 445 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/374 (32%), Positives = 193/374 (51%), Gaps = 7/374 (1%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 HL +D S L+ L+ +L P I++S ++ + R ++ +L+ + F++ + Sbjct: 49 HLNLDTSSAPLMALSYWLLPMTIMASQHTMNKEPLQRQRMFLTTLAMLQLFISMTFMASN 108 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 + L YI FEA+LIP VII WG +ER+ A F LYT S+ +L + + KT Sbjct: 109 LTLMYIMFEATLIPTMVIITRWGQQTERLTAGTYFMLYTLTTSMPLLMTTLFLNNMTKTP 168 Query: 193 SIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 ++ P++ + +W+A +F K+P++ H WLP AHV+AP AGS+ LA I+L Sbjct: 169 TLFMQMMQPMSPWT-ELMLWVACLGAFLAKMPVYGLHLWLPKAHVEAPIAGSMVLAAILL 227 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG IR L + + F P I L+L A+L + QTD+K LIAYSSI+HMG Sbjct: 228 KLGGYGIIRMTQILPTVKTDLFLPFII-LALWGATLANLTCLQQTDLKSLIAYSSISHMG 286 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V I + + GAM M++HG SSALF Y+R TR + G + +P Sbjct: 287 LVIAAIMIQTQWSLSGAMALMIAHGFTSSALFCLANTTYERTKTRIMALTRGFHNILPML 346 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 ++ + N+ P T F GE L+ S+F ++ ++++A YSL ++ Sbjct: 347 TTWWLLINLMNIATPPTMNFTGELLIASSLFNWCPATIIMFGLSMLITASYSLHMFLSTQ 406 Query: 433 FGVSKCEKVQQLKD 446 G + D Sbjct: 407 MGTPLLNAMTHPTD 420 >gi|56548687|ref|YP_161217.1| NADH dehydrogenase subunit 4 [Pseudocheirus peregrinus] gi|56398528|emb|CAG26403.1| NADH dehydrogenase subunit 4 [Pseudocheirus peregrinus] Length = 459 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 204/375 (54%), Gaps = 12/375 (3%) Query: 60 SSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYM 115 +S M+ + + + Y + +D +S LVVL+ +L P +++S + + + ++ Sbjct: 37 ASLTMLHHANDLGYNFNSSFNMDSLSSPLVVLSCWLLPLMMIASQNHLSKESLNRKKTFL 96 Query: 116 IAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFG 174 ++L+ +I AF + ++++FYI FE +LIP V+I WG +ER+ A F YT G Sbjct: 97 TTLIILQLSLIMAFTASELIMFYILFETTLIPTLVVITRWGNQNERLNAGLYFLFYTLVG 156 Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPF----SIQYWMWIAFFCSFAIKIPMFPFHT 230 S+ +L A++ + S+ L A P S +W A +F +K+P++ H Sbjct: 157 SLPLLVALLYL--HTNLGSLHMLMASITSPTLKYSSSNTILWYACMMAFMVKMPLYGLHL 214 Query: 231 WLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYAS 290 WLP AHV+AP AGS+ LA I+LK+GGYG +R + P+ S P + LS+ +I S Sbjct: 215 WLPKAHVEAPIAGSMVLAAILLKLGGYGIMRITVFTDPVTSNLLYPFVI-LSMWGMIMTS 273 Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 + + QTD+K LIAYSS++HMG V I GA M++HGL SS LF Sbjct: 274 SICLRQTDLKSLIAYSSVSHMGLVIIAALMQSTLSFMGATALMIAHGLTSSMLFCLANTN 333 Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVA 410 Y+R+H+R + GL +P ++ ++ N+ LP + +GE +VI++ F SN Sbjct: 334 YERIHSRTMILARGLQVLLPLMCTWWLLASLTNLALPPSINLLGELMVIVASFSWSNFSI 393 Query: 411 VLASFGVVLSALYSL 425 +L V++A+YSL Sbjct: 394 ILLGINTVITAIYSL 408 >gi|13878963|ref|NP_008247.2|ND4_10599 NADH dehydrogenase subunit 4 [Lumbricus terrestris] Length = 451 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 131/393 (33%), Positives = 215/393 (54%), Gaps = 11/393 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQENF--REYMIAFLVLESMVIGAFLSLDML 135 ++ D +S L LT ++T IL+S K + N + +M ++L ++I FLS +++ Sbjct: 52 YMSSDMMSFTLSALTIWVTVMMILASTKIMHLNMYPKMFMTNLVILLIILINCFLSPNLI 111 Query: 136 LFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI+FEASLIP V+I WG ER A+ +YT S+ ML + + KT+ + Sbjct: 112 MFYIWFEASLIPTMVLIMTWGYQPERSQASMYLMIYTVAASLPMLMVLCKIFIVSKTA-M 170 Query: 195 IDLYAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + ++ +FP + W+ F +K+PMF H WLP AHV+AP AGS+ LA I+L Sbjct: 171 MPMFMNMEFPMDYPSMALAWVLTLGGFLVKLPMFTVHLWLPKAHVEAPIAGSMILAAILL 230 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R +L LF ++ + ++ ++L+ + SL+ + Q+D+K LIAYSS+ HMG Sbjct: 231 KLGGYGILR-MLSLFHYMAKSTSSLLSSVALVGAVSTSLICLRQSDLKSLIAYSSVGHMG 289 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 + G G + A+ M++HGL SSALF + Y+ HTR +F GL+ P Sbjct: 290 LMVAGALMSSNWGFQAALAMMIAHGLSSSALFVMANMNYELTHTRSLFLMKGLLVLAPTL 349 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + +FT +NM P + + E ++I S+ + S + +L +A Y L++Y + Sbjct: 350 TMWWFLFTASNMAAPPSINLLSEIMLITSILKMSTSAFILLGLTSFFTAAYCLYMYTSMH 409 Query: 433 FG----VSKCEKVQQLKDLSLRERCMVYPIAVL 461 G S ++KDL+L +V I ++ Sbjct: 410 HGPLMLTSNPIPQFKVKDLTLMTMHLVPTILII 442 >gi|110432475|gb|ABG73800.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432480|gb|ABG73804.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432485|gb|ABG73808.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432490|gb|ABG73812.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432495|gb|ABG73816.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432500|gb|ABG73820.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432505|gb|ABG73824.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432510|gb|ABG73828.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432515|gb|ABG73832.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432959|gb|ABG74187.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] gi|110432964|gb|ABG74191.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] Length = 459 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 128/384 (33%), Positives = 204/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLALTMWLLPLTIMASQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QNHMGTLN 175 Query: 197 LYAMSKFPFSI-QYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L+ M+ + + W MW+A +F IK+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 176 LFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL +++ A L L +I SL+ + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R+H R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 + ++ + N+ LP + IGE + M+ F SN +L ++++A YSL++ Sbjct: 355 MSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYMLAMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G S + L RE ++ Sbjct: 415 QRGKS-LYHMHNLNPSLTRENTLM 437 >gi|301506367|gb|ADK77658.1| NADH dehydrogenase subunit 4 [Panthera tigris amoyensis] Length = 459 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 128/394 (32%), Positives = 215/394 (54%), Gaps = 35/394 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETLARKKLYITMLIILQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYI---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWAKPISATWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPTTNQMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T I E V+++ F SN L ++++ALY+ Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIAELFVVVASFSWSNMTITLMGTNIIITALYT 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLS---LRERCMV 455 L++ + + + +K++S RE ++ Sbjct: 408 LYM----LITTQRGKYTHHIKNISPSFTRENALM 437 >gi|302632704|ref|YP_003848795.1| NADH dehydrogenase subunit 4 [Hapalogenys nigripinnis] gi|302319064|gb|ADL14733.1| NADH dehydrogenase subunit 4 [Hapalogenys nigripinnis] Length = 460 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 205/365 (56%), Gaps = 14/365 (3%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAF 129 F + ++ D +S L+VLT +L P IL+S + + R Y+ L+ +I AF Sbjct: 52 FLNSYMATDPLSTPLLVLTCWLLPLMILASQNHMSSDTVNRQRTYISLLTSLQIFLILAF 111 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 + ++++FY+ FE +LIP +I WG +ER+ A F YT GS+ +L A++++ + Sbjct: 112 SATEIIMFYVMFETTLIPTLFLITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLL--Q 169 Query: 189 KKTSSIIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 T ++ L P S+ + W WI +F +K+P++ H WLP AHV+AP AG Sbjct: 170 NTTGTLSLLTLQYVPPMSLTTYGDKLW-WIGCLMAFLVKMPLYGVHLWLPKAHVEAPIAG 228 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L+ L PL + P I L+L +I + + QTD+K LI Sbjct: 229 SMVLAAVLLKLGGYGMMRMLILLEPLTKELSYPFIV-LALWGVIMTGSICLRQTDLKSLI 287 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + Sbjct: 288 AYSSVSHMGLVVSGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMALAR 347 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P + + ++AN+ LP +GE ++I SVF S +L G +++A Y Sbjct: 348 GLQVALPLLSTWWFIASLANLALPPLPNLMGELMIITSVFNWSWWTLLLTGTGTLITAGY 407 Query: 424 SLWLY 428 SL+++ Sbjct: 408 SLYMF 412 >gi|38018056|ref|NP_937943.1| NADH dehydrogenase subunit 4 [Pagrus auriga] gi|37896792|dbj|BAD00003.1| subunit 4 of the NADH ubiquinone oxidoreductase complex [Pagrus auriga] Length = 460 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 128/360 (35%), Positives = 202/360 (56%), Gaps = 12/360 (3%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLD 133 +L D +S L++LT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YLATDPLSSPLLILTCWLLPLMILASQNHTATDPANRQRMYITLLTSLQFFLILAFGATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 ++FYI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + Sbjct: 116 AIMFYIMFEATLIPTLILITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLFLQNTAGSL 175 Query: 193 SIIDLYAMSKFP---FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 S + L ++ + + W W A F +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SFLTLSYLTPLQLLTYGDKLW-WAACFLAFLVKMPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFA-PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 ++LK+GGYG +R +L +F +++ + P I F +L +I + + QTD+K LIAYSS+ Sbjct: 235 VLLKLGGYGMMR-MLTIFESSTEKMSYPFIIF-ALWGVIMTGSICLRQTDLKSLIAYSSV 292 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HMG V GI GA+ M++HGL SSALF Y+R H+R + GL Sbjct: 293 SHMGLVIGGILIQTPWSFTGALTLMIAHGLTSSALFCLANTNYERTHSRTMVLARGLQMA 352 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P A + T+AN+ LP +GE ++I S+F S L G +++A YSL+++ Sbjct: 353 LPLMAAWWFISTLANLALPPLPNLMGELMIISSLFNWSWWTLALTGAGTLITAGYSLYMF 412 >gi|128754|sp|P12775|NU4M_PARLI RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 Length = 464 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 139/402 (34%), Positives = 217/402 (53%), Gaps = 24/402 (5%) Query: 69 HWID--YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLE 122 HW + S L D IS L+ L+ +L P +++S +I + N R ++I + + Sbjct: 47 HWSAPWHNLSNILASDSISAPLIALSCWLAPISLIASNNTISKQSELNQRTFIIIVIFIA 106 Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFA 181 +I F +L++LLFY+ FE +LIP ++I WG ER A F YT FGS+ +L + Sbjct: 107 GALIITFSALELLLFYVAFETTLIPTLILITRWGAQMERFQAGLYFMFYTLFGSLPLLIS 166 Query: 182 IVVMCWEKKTSSIID---LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 ++ + + SI + ++ S+ ++ W W +F IK+P++ FH WLP AHV+ Sbjct: 167 LIAIYISSSSLSIPNVELIWTPSETMETLNIW-WALSIIAFLIKMPIYGFHLWLPKAHVE 225 Query: 239 APTAGSVFLAGIMLKMGGYGCIRF--LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296 AP AGS+ LA I+LK+GGYG IR L L S A +I F S A++ S++ + Q Sbjct: 226 APVAGSMILAAILLKLGGYGLIRLINLFATISLNSLSLA-LITFCSWGALV-TSIICVRQ 283 Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356 TD+K LIAYSS+ HM V IFS G GA+ M+++GLVSS LF +Y+R T Sbjct: 284 TDLKALIAYSSVGHMSIVAAAIFSSTNWGTNGALILMIAYGLVSSDLFSLANTVYERSGT 343 Query: 357 RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFG 416 R + GL +P + +V + AN+GLP + IGE L++ S+ S + + Sbjct: 344 RTLAITRGLKTILPLSTLWWLVMSAANLGLPPSPNLIGEILILSSLIAWSIWLFPIIGLA 403 Query: 417 VVLSALYSLWLYRKVVFGVSKC-EKVQQLKDLSL---RERCM 454 + A+YSL ++F +S+ + ++SL RE + Sbjct: 404 TIFGAIYSL-----MIFQLSQQGTPTNNINNISLSFSREHLL 440 >gi|33411853|emb|CAD60449.1| NADH dehydrogenase subunit 4 [Actinidia chinensis] Length = 188 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 100/187 (53%), Positives = 135/187 (72%), Gaps = 2/187 (1%) Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGS 175 A L+ E ++I F LD LLFY+F E+ IPMF+IIGVWG +R I AAY+FFLYT GS Sbjct: 3 ASLIREFLMIAVFRILDPLLFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGS 62 Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235 +FML AI+++ ++ T+ + + ++F Q ++WIAFF SFA+K+PM P H WLP A Sbjct: 63 VFMLLAILLILFQTGTTDL-QILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEA 121 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+APTAGSV LAGI+LK+G YG +RF +P+FP A+ F P I+ LS IAIIY SL ++ Sbjct: 122 HVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLR 181 Query: 296 QTDIKKL 302 Q D+KK+ Sbjct: 182 QIDLKKI 188 >gi|294486042|gb|ADE87893.1| NADH dehydrogenase subunit 4 [Ochotona roylei] Length = 404 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/360 (36%), Positives = 203/360 (56%), Gaps = 8/360 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQE---NFREYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + + ++ I+ LVL + +I F +++LF Sbjct: 3 DPLSTPLLILTFWLLPLMLIASQNHLSKESLSRKKLFISMLVLLQIFLIMTFSVTELILF 62 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + I Sbjct: 63 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLI 122 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 I L A +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 123 IQLLARPLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 182 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L L P+ +++ A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 183 GGYGMMRLTLILNPV-TEHMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 241 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 242 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERTHSRTMILARGLQTILPLMAA 301 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ G Sbjct: 302 WWLLASLANLALPPSINLIGELFVIVSSFSWSNFTIILAGTNMLITALYTLYMLSTTQRG 361 >gi|58618674|ref|YP_203379.1| NADH dehydrogenase subunit 4 [Xenopus (Silurana) tropicalis] gi|55274411|gb|AAV49107.1| NADH dehydrogenase subunit 4 [Xenopus (Silurana) tropicalis] Length = 459 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 212/392 (54%), Gaps = 11/392 (2%) Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIG 127 +F ++ + +D +S L++LT +L P IL+S + R ++ + L+ +I Sbjct: 49 THFSNHLMSIDQLSTPLLILTCWLLPLMILASQNHLSTEPISRQRTFITMLVFLQLSLIM 108 Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM- 185 AF + +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L A++ + Sbjct: 109 AFSATELILFYIMFEITLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLSLY 168 Query: 186 CWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + S + + P S + W W A +F +K+P++ H WLP AHV+AP AG Sbjct: 169 SYTGTLSLSLLQLLPNHIPLSWANKLW-WFACLLAFMVKMPLYGTHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA I+LK+GGYG IR + L P A + A LSL II S + + QTD+K +I Sbjct: 228 SMVLAAILLKLGGYGIIRISITLTP-AMKDLAYPFLILSLWGIIMTSSICLRQTDLKSMI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V + GAM M++HGL+SSALF Y+R H+R + Sbjct: 287 AYSSVSHMGLVISAAMIQTPWSLTGAMILMIAHGLISSALFCLANTNYERTHSRALLLSR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P ++ +ANM LP + +GE ++ ++F SN +L G +L+A Y Sbjct: 347 GLQSILPLMGTWWLLSNLANMALPPSPNLMGEITIMTALFNWSNWTIILTGIGTLLTASY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCMV 455 SL+++ G + E + + RE ++ Sbjct: 407 SLYMFLITQRGPTP-EHLTAITPTHTREHTLM 437 >gi|145567067|gb|ABP81875.1| NADH dehydrogenase subunit 4 [Microcebus tavaratra] Length = 459 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 129/393 (32%), Positives = 210/393 (53%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + R+ Y+ L+ +I F + +++LF Sbjct: 59 DSLSSPLLMLTVWLLPLMIMASQHHLTKESLMRKKLYLSMLTFLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II G +ER+ A F YT GS+ ++ A+V + + + + Sbjct: 119 YILFEATLIPTLIIITRGGNQTERLNAGLYFLFYTLIGSLPLMVALVYVQNSLGSLNYLV 178 Query: 197 LYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +S+ S+ +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 MIMLSQNLPSLWSSNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R + L P P I L L +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMLRLTMILNPTTKIMAYPFIM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R+H+R + GL +P A Sbjct: 298 IVAILMQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLLARGLQTFLPLMAT 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++ N+ LP +GE VIM+ F SN ++ V+++ALYSL++ G Sbjct: 358 WWLLASLTNLALPPFINLVGELFVIMTSFSWSNLTIIMTGLNVLITALYSLYMLTMTQRG 417 Query: 435 VSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 + +K RE + + P+ +LT+ Sbjct: 418 -KFTYHIHNIKPSYTRENTLMSMHILPLIMLTL 449 >gi|53686414|ref|YP_097020.1| NADH dehydrogenase subunit 4 [Oedipina poelzi] gi|51979767|gb|AAU20444.1| NADH dehydrogenase subunit 4 [Oedipina poelzi] Length = 458 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 203/359 (56%), Gaps = 9/359 (2%) Query: 74 FCSYHLGVDGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAF 129 + ++G+D IS L+ LT +L P IL+S S ++ + Y+ VL+ ++I AF Sbjct: 51 MTNKYVGLDQISSPLLALTCWLMPLMILASQGHLKNSPMKHQQMYISMLTVLQVVLILAF 110 Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWE 188 S +++LFYI FE++LIP +II WG +ER+ A F YT GS+ +L A++ + + Sbjct: 111 SSTELILFYITFESTLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALMFLSYH 170 Query: 189 KKTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246 + S++ ++ + + + +W +F +K+P++ H WLP AHV+AP AGS+ Sbjct: 171 MNSLSMVTMHMLPEMFIMSTTNKILWFGCLTAFMVKMPLYGAHLWLPKAHVEAPVAGSMI 230 Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306 LA ++LK+GGYG IR P+ + +I L+L I+ L+ QTD+K LIAYS Sbjct: 231 LAAVLLKLGGYGIIRITAMYTPMIELSYPFII--LALWGILMTGLICTRQTDLKSLIAYS 288 Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366 S++HMG V GA+ M+SHGL+SS+LF Y+R H+R + GL Sbjct: 289 SVSHMGLVVAATLIQTTWSFTGAIMLMISHGLISSSLFCLANTNYERTHSRTMLLARGLQ 348 Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 +P A ++ +ANM LP T+ GE ++++S++ S +L G +++A Y+L Sbjct: 349 IMLPLMATWWLLLNLANMALPPTTNLWGEIIIMVSMYSWSVWTIILTGLGTMVTAAYTL 407 >gi|11994086|ref|NP_072066.1|ND4_15563 NADH dehydrogenase subunit 4 [Echinops telfairi] gi|11967795|emb|CAC19401.1| NADH dehydrogenase subunit 4 [Echinops telfairi] gi|15626313|emb|CAC69927.1| NADH dehydrogenase subunit 4 [Echinops telfairi] Length = 459 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/356 (34%), Positives = 197/356 (55%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++L+++L P +L+S K + + Y+ +VL+ + F + +M+LF Sbjct: 59 DPLSTPLIILSSWLLPLMLLASQSHMSKESETRKKYYITMLIVLQLFLFMTFSATEMMLF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L + + T +++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGVYFLFYTLMGSLPLLIVLTYIYNNLGTLNLLI 178 Query: 197 L-YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L Y + PF W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+ Sbjct: 179 LPYYIMPLPF---LWSSKLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P+ P + LSL ++ S + + Q D+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITIFLDPITLNMSYPFLM-LSLWGMLMTSSICLRQVDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIVAILIQTPWSFMGASTLMIAHGLTSSMLFTLANTNYERTHSRTMILARGLQTMLPV 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP T IGE L+I S F SN +L ++++A Y+L++ Sbjct: 355 MASWWILASLTNLALPPTINLIGELLIISSSFSWSNITMLLMGLNMLMTASYTLYM 410 >gi|221145613|ref|YP_002519881.1| NADH dehydrogenase subunit 4 [Myrmecobius fasciatus] gi|218135512|gb|ACK57360.1| NADH dehydrogenase subunit 4 [Myrmecobius fasciatus] Length = 459 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 135/410 (32%), Positives = 219/410 (53%), Gaps = 30/410 (7%) Query: 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISIL 87 C ++S+ V +T +F+ S++ S ++ + + Y + +D +S Sbjct: 17 CSKKSWMWV--NATTHSFLISIW----------SLTLLHHSTDLGYNYNSSFSLDPLSGP 64 Query: 88 LVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143 L+VL+ +L P +++S + + Y+ A + L+ +I AF S ++++FYI FE Sbjct: 65 LLVLSCWLLPLMMIASQNHLMHEPLTRKKVYLTALITLQLSLIMAFSSSELIMFYILFET 124 Query: 144 SLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK 202 +LIP +II WG +ER+ A F YT GS+ +L A++ + S+ L K Sbjct: 125 TLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALLYL--HHNLGSLHILTVTLK 182 Query: 203 FP-----FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257 P S +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+GGY Sbjct: 183 APALNTTMSTSL-LWLACMMAFMVKLPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGY 241 Query: 258 GCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 G +R P+ + P I LSL +I S + + QTD+K LIAYSS++HMG V + Sbjct: 242 GIMRITTLTEPVTTNMCYPFIV-LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMGLVIVA 300 Query: 318 IFSGMKSGVE--GAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVV 375 M+S V GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 301 AL--MQSPVSFMGATVLMIAHGLTSSMLFCLANTNYERTHSRTLILTRGLQAILPLMCTW 358 Query: 376 MMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 ++ ++AN+ +P + +GE +VI++ F SN +L V++A+YSL Sbjct: 359 WLLASLANLAMPPSINLLGELMVIITSFSWSNFSIILLGVNTVITAIYSL 408 >gi|294486040|gb|ADE87892.1| NADH dehydrogenase subunit 4 [Ochotona roylei] Length = 404 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/360 (36%), Positives = 202/360 (56%), Gaps = 8/360 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF---REYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F +++LF Sbjct: 3 DPLSTPLLILTFWLLPLMLIASQNHLSKETLSRKKLFISMLVLLQIFLIMTFSVTELILF 62 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + I Sbjct: 63 YILFEATLIPTLIIITRWGNPTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLI 122 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 I L A +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 123 IQLLARPLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 182 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L L P+ +++ A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 183 GGYGMMRLTLILNPV-TEHMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 241 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 242 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERTHSRTMILARGLQTILPLMAA 301 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ G Sbjct: 302 WWLLASLANLALPPSINLIGELFVIVSSFSWSNFTIILAGTNMLITALYTLYMLSTTQRG 361 >gi|189097566|gb|ACD76637.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLXLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|77020022|ref|YP_337807.1| NADH dehydrogenase subunit 4 [Lates calcarifer] gi|62902013|gb|AAY18960.1| NADH dehydrogenase subunit 4 [Lates calcarifer] Length = 460 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 196/359 (54%), Gaps = 10/359 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLD 133 ++ VD ISI L++LT +L P IL+S + R Y+ L+ +I AF + + Sbjct: 56 YVAVDPISIPLLMLTCWLLPLMILASQNHLALEPANRQRTYISLLTSLQFFLILAFSATE 115 Query: 134 MLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTS 192 M LFYI FEA+LIP +II WG +ERI A F YT S+ +L A++V+ + Sbjct: 116 MALFYIAFEATLIPTLIIITRWGNQAERITAGVYFLFYTLMASLPLLVALLVLQHHAGSL 175 Query: 193 SIID---LYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 SI+ LY +S + W W +F +K+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 SILTTQFLYPTYYTSYSNKLW-WAGCILAFLVKLPLYGVHLWLPKAHVEAPVAGSMILAA 234 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 ++LK+GGYG +R + L PL + P I F +L ++ + Q D+K +IAYSS+A Sbjct: 235 VLLKLGGYGMMRMMAILDPLTKELSYPFIIF-ALWGLVMMGSTCLRQADLKSMIAYSSVA 293 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG V GI + GA+ M++HGL +SALF Y+R H+ + GL + Sbjct: 294 HMGLVVAGILIQTQWSFTGALILMIAHGLTASALFCLANTNYERTHSWVMLLTRGLQMAL 353 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 P + T+AN+ LP + E +V+ ++ S + GV+++A YSL+++ Sbjct: 354 PLMTAWWFLATLANLALPPLPNLMAELMVLTALCNWSPWTILFTGAGVLITAAYSLYMF 412 >gi|297565702|ref|YP_003684674.1| proton-translocating NADH-quinone oxidoreductase subunit M [Meiothermus silvanus DSM 9946] gi|296850151|gb|ADH63166.1| proton-translocating NADH-quinone oxidoreductase, chain M [Meiothermus silvanus DSM 9946] Length = 474 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 131/398 (32%), Positives = 214/398 (53%), Gaps = 18/398 (4%) Query: 77 YHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF-LVLESMVIGAFLSLDML 135 Y +G+D ++ L + +F LS W + M+ + L++E+ ++G F +LD++ Sbjct: 68 YAVGLDNAAMFLWLAVSFT---VFLSVWVAKAPT---RMLGYALMMETGLLGIFAALDLV 121 Query: 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS-- 193 LFY+FFE +LIP +++G++GG ER+ A Y F L+T GS+ ML AI+ + S Sbjct: 122 LFYVFFEFTLIPALLMLGLYGGRERMRALYTFALFTLVGSLPMLAAILAARFLGGAESFL 181 Query: 194 IIDLYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 I DLY P W+++ FF + A+K P+FP H WLP+ H + +G G + Sbjct: 182 IGDLY---NHPLKGVAASWVFLGFFFALAVKTPLFPLHAWLPSFHQENHPSGLADAMGTL 238 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 K+G + R+ +PL P Q P++ L+ IYA+ + D K L+AY I+HM Sbjct: 239 YKVGIFAFFRWAMPLAPEGFQGLQPLLLTLAAFTAIYAAWAAWGAKDWKNLLAYGGISHM 298 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 G IG+FSG G GA+F + + + + +F G++Y+R T +I GL + P Sbjct: 299 GLAAIGLFSGTSEGAVGALFLLGASFVYTGGMFLFTGLLYERTGTLEIGPVRGLAKSAPA 358 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A + M+ M+ +GLPG +GF GEF+ ++ ++ S + +A V+ +A Y+L Y+K Sbjct: 359 LAALGMILVMSMIGLPGLAGFPGEFMALLGAYKASPWLTFVAFLSVIAAAAYALTAYQK- 417 Query: 432 VFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469 VF S+ V D++L+E I G+YP Sbjct: 418 VFHESENRAV---PDMTLQEWSFAVVIVAAIALLGLYP 452 >gi|85376320|gb|ABC70378.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 201/363 (55%), Gaps = 17/363 (4%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKT--SSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIP 224 T GS+ +L A++ + T S I L ++ S W MW+A+ +F +K+P Sbjct: 153 TLVGSLPLLIALI---YTHNTLGSLNIPLLTLTAQELS-NSWANNLMWLAYTMAFMVKMP 208 Query: 225 MFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284 ++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL Sbjct: 209 LYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLW 267 Query: 285 AIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALF 344 +I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 268 GMIMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLF 327 Query: 345 FCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F Sbjct: 328 CLANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFS 387 Query: 405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAV 460 SN +L ++++ALYSL+++ +G S + +K RE +++ PI + Sbjct: 388 WSNITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILL 446 Query: 461 LTV 463 L++ Sbjct: 447 LSL 449 >gi|295641183|gb|ADG22725.1| NADH dehydrogenase subunit 4 [Martes foina] Length = 459 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/361 (32%), Positives = 192/361 (53%), Gaps = 25/361 (6%) Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYA 163 K + Y+ ++L+ ++I F + ++++FYI FEA+L+P +II WG +ER+ A Sbjct: 86 KETLTRKKLYITMLVMLQLLLIMTFTTTELIMFYILFEATLMPTLIIITRWGNQTERLNA 145 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW------------M 211 F YT GS+ +L A++ + + ++L IQYW + Sbjct: 146 GLYFLFYTLVGSLPLLIALLWL---QNNLGTLNL-------LVIQYWAQPLLNSWSNTLL 195 Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R + L PL + Sbjct: 196 WLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITILLNPL-T 254 Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331 + A LSL +I S + + QTD+K LIAYSS++HM V + + GA Sbjct: 255 DFMAYPFMMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAVLIQSPWSYMGATA 314 Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 M++HGL SS LF Y+R+H+R + GL +P A ++ ++ N+ LP T Sbjct: 315 LMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPTIN 374 Query: 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRE 451 +GE V+M+ F SN +L + ++ALYSL++ G ++ +K RE Sbjct: 375 LVGELFVVMASFSWSNITIILMGINITITALYSLYMLITTQRG-KYTHHIKNIKPSFTRE 433 Query: 452 R 452 Sbjct: 434 N 434 >gi|157736043|ref|YP_001491496.1| NADH dehydrogenase subunit 4 [Centropyge loricula] gi|157679354|dbj|BAF80411.1| NADH dehydrogenase subunit 4 [Centropyge loricula] Length = 460 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/380 (34%), Positives = 208/380 (54%), Gaps = 15/380 (3%) Query: 60 SSFQMIEYYHWIDYFC-SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREY 114 +SF ++ + C S +L D +S L+VLT +L P IL+S + R Y Sbjct: 37 TSFTWLKNLSETGWSCLSPYLATDPLSTPLLVLTCWLLPLMILASQNHLASEPIGRQRMY 96 Query: 115 MIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFF 173 + L+ +I AF + ++++FY+ FEA+L+P V+I WG +ER+ A + F YT Sbjct: 97 ITLLTALQIFLIMAFGATEIIMFYVMFEATLLPTLVLITRWGNQTERLSAGFYFLFYTLA 156 Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI-----QYWMWIAFFCSFAIKIPMFPF 228 S+ +L A++++ + T ++ L P + + W W + +F +K+P++ Sbjct: 157 ASLPLLIALLLL--QNTTGTLSLLTLQYSNPLHLTSYADKIW-WASCLLAFLVKMPLYGV 213 Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL + P I L+L +I Sbjct: 214 HLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMLTVLEPLTKELSYPFII-LALWGVIM 272 Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348 + + QTD+K LIAYSS++HMG V GI G GA+ M++HGL SSALF Sbjct: 273 TGSICLRQTDLKSLIAYSSVSHMGLVVGGILIQTAWGFTGALILMIAHGLTSSALFCLAN 332 Query: 349 VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT 408 Y+R H+R + GL +P + ++AN+ LP +GE ++ S+F S Sbjct: 333 TNYERTHSRTMLLARGLQMALPLMTSWWFIASLANLALPPLPNLMGELMIFTSLFNWSWW 392 Query: 409 VAVLASFGVVLSALYSLWLY 428 +L G +++A YSL+++ Sbjct: 393 TFILTGAGTLITAAYSLYMF 412 >gi|9828517|gb|AAG00216.1| NADH dehydrogenase subunit 4 [Ochotona himalayana] Length = 460 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 129/360 (35%), Positives = 201/360 (55%), Gaps = 8/360 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF---REYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F +++LF Sbjct: 59 DPLSTPLLILTFWLLPLMLIASQNHLSKETPSRKKLFISMLVLLQIFLIMTFSVTELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + I Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLI 178 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 I L A +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 179 IQLLARPLTNSWSNSLLWLACMTAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 238 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L L P+ +++ A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 239 GGYGMMRLTLILNPV-TEHMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 298 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERTHSRTMILARGLQTILPLMAA 357 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP + IGE VI S+F SN +L ++++ALY+L++ G Sbjct: 358 WWLLASLANLALPPSINLIGELFVITSLFSWSNFTIILTGINMLITALYTLYMLSTTQRG 417 >gi|269996158|gb|ACZ57405.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SPTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|13013|emb|CAA24035.1| unnamed protein product [Homo sapiens] Length = 459 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMLLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|294486044|gb|ADE87894.1| NADH dehydrogenase subunit 4 [Ochotona roylei] Length = 404 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/360 (36%), Positives = 202/360 (56%), Gaps = 8/360 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF---REYMIAFLVL-ESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + ++ I+ LVL + +I F +++LF Sbjct: 3 DPLSTPLLILTFWLLPLMLIASQNHLSKETPSRKKLFISMLVLLQIFLIMTFSVTELILF 62 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + T + I Sbjct: 63 YILFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTSGTLNFLI 122 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 I L A +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+ Sbjct: 123 IQLLARPLTDSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKL 182 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG +R L L P+ +++ A LSL +I S + + QTD+K LIAYSS++HM V Sbjct: 183 GGYGMMRLTLILNPV-TEHMAYPFLLLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 241 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 + I GA M++HGL SS LF Y+R H+R + GL +P A Sbjct: 242 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERTHSRTMILARGLQTILPLMAA 301 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++AN+ LP + IGE VI+S F SN +LA ++++ALY+L++ G Sbjct: 302 WWLLASLANLALPPSINLIGELFVIVSSFSWSNFTIILAGTNMLITALYTLYMLSTTQRG 361 >gi|83764115|emb|CAI84974.1| NADH dehydrogenase subunit 4 [Lumbricus terrestris] Length = 452 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 131/393 (33%), Positives = 214/393 (54%), Gaps = 11/393 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQENF--REYMIAFLVLESMVIGAFLSLDML 135 ++ D +S L LT ++T IL+S K + N + +M ++L ++I FLS +++ Sbjct: 52 YMSSDMMSFTLSALTIWVTVMMILASTKIMHLNMYPKMFMTNLVILLIILINCFLSPNLI 111 Query: 136 LFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI+FEASLIP V+I WG ER A+ +YT S+ ML + + KT+ + Sbjct: 112 MFYIWFEASLIPTMVLIMTWGYQPERSQASMYLMIYTVAASLPMLMVLCKIFIVSKTA-M 170 Query: 195 IDLYAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + ++ +FP + W+ F +K+PMF H WLP AHV+AP AGS+ LA I+L Sbjct: 171 MPMFMNMEFPMDYPSMALAWVLTLGGFLVKLPMFTVHLWLPKAHVEAPIAGSMILAAILL 230 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R +L LF ++ + ++ ++L+ + SL+ Q+D+K LIAYSS+ HMG Sbjct: 231 KLGGYGILR-MLSLFHYVAKSTSSLLSSVALVGAVSTSLICFRQSDLKSLIAYSSVGHMG 289 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 + G G + A+ M++HGL SSALF + Y+ HTR +F GL+ P Sbjct: 290 LMVAGALMNSNWGFQAALAMMIAHGLSSSALFVMANMNYELTHTRSLFLMKGLLVLAPTL 349 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + +FT +NM P + + E ++I S+ + S + +L +A Y L++Y + Sbjct: 350 TMWWFLFTASNMAAPPSINLLSEIMLITSILKMSTSAFILLGLTSFFTAAYCLYMYTSMH 409 Query: 433 FG----VSKCEKVQQLKDLSLRERCMVYPIAVL 461 G S ++KDL+L +V I ++ Sbjct: 410 HGPLMLTSNPIPQFKVKDLTLMTMHLVPTILII 442 >gi|2290436|gb|AAD04691.1| NADH dehydrogenase subunit 4 [Trachypithecus francoisi] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/400 (32%), Positives = 213/400 (53%), Gaps = 15/400 (3%) Query: 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ-ENF---REYMIAFLVLESMVIGAFLS 131 S +L +D +S L+ L+ +L P I++S + EN + Y+ + L+ +I F+S Sbjct: 53 STYLSLDPLSTPLLTLSAWLLPLMIMASQYHLHNENLSRKKLYLSMMIFLQISLIMTFMS 112 Query: 132 LDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 +++LFYI FE +LIP +II WG +ER+ A+ F YT GS+ +L +++ + Sbjct: 113 TELILFYILFETTLIPTLIIITRWGNQAERLNASTYFLFYTLAGSLPLLI-MLMFTYNNM 171 Query: 191 TSSIIDLYAMSKFPFSIQY---WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL 247 S I L ++ + + W+A +F +K+P++ H WLP AHV+AP AGS+ L Sbjct: 172 GSLNIMLLTLTAQKLTTTWSHNLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL 231 Query: 248 AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS 307 A ++LK+GGY +R L PL ++Y A LSL +I S + QT++K LIAY Sbjct: 232 AAVLLKLGGYRMMRLTSILNPL-TEYMAYPFLMLSLWGMIMTSSTCLRQTELKALIAYPP 290 Query: 308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVH 367 ++HM V GA+ M++HGL SS LF Y+R H+R + GL Sbjct: 291 VSHMALVITAPLIQTPWSFTGAIILMIAHGLTSSMLFCLANSNYERTHSRIMLLSRGLQT 350 Query: 368 NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 +P A V + N+ LP T IGE LV+ ++F S+ +L ++++ALYSL++ Sbjct: 351 LLPLMAFWWFVANLTNLALPPTINLIGELLVMATLFSWSHVTIMLTGLNMLITALYSLYM 410 Query: 428 YRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 + G + + +K RE +++ PI +L++ Sbjct: 411 FITTQRG-TLTSHIMNMKPSFTRENMLMFMHISPIILLSL 449 >gi|150022645|gb|ABR57765.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG +ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQTERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|23264070|ref|NP_694527.1| NADH dehydrogenase subunit 4 [Panulirus japonicus] gi|23095922|dbj|BAC16324.1| NADH dehydrogenase subunit 4 [Panulirus japonicus] Length = 446 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 210/365 (57%), Gaps = 10/365 (2%) Query: 72 DYFCS---YHLGVDGISILLVVLTTFLTPFCILSSWKSIQE-NFRE-YMIAFLVLESMVI 126 D+F S Y +GVD +S L++L+ ++ I SS K ++ NF +++ + L ++ Sbjct: 39 DFFMSELGYMMGVDYLSYALILLSAWVIALMICSSQKVMKTYNFSGGFILVNMSLLVCLL 98 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVM 185 F S++ L FY+ FE+SLIP ++I WG ER+ A YT F S+ +L + + Sbjct: 99 LTFSSMNYLFFYVSFESSLIPTLILILGWGYQPERVQAGLYMLFYTLFASLPLLICLFSL 158 Query: 186 CWEKKTSSIIDL-YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 +E S II L Y + + F W + + F +F +K+P++ FH WLP AHV+AP AGS Sbjct: 159 -YEAGGSLIIGLPYKVDQMDFISILWYFSSLF-AFLVKLPLYLFHIWLPKAHVEAPVAGS 216 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LAG++LK+GGYG IR +L +F ++ F + L ++ + SL+ + + DIK LIA Sbjct: 217 MILAGVLLKLGGYGIIR-ILSIFSSINKSFVWLWVCLGIVGGVMVSLMCLREVDIKSLIA 275 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS+AHMG V G+ + G+ G++ M+ HGL SS LF ++Y+R+ TR + G Sbjct: 276 YSSVAHMGMVLGGLMTSSWWGMSGSLVVMVGHGLCSSGLFCLANMVYERIGTRSMLIGKG 335 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L+ MP + + ++ NMG P T F GE V+ S+ S V +F + LSA Y+ Sbjct: 336 LLSIMPSMGLWWFLLSIGNMGAPPTLNFAGEIQVLSSLVGWSKLTIVGLAFLLFLSASYT 395 Query: 425 LWLYR 429 +++Y Sbjct: 396 IYMYS 400 >gi|5835830|ref|NP_007831.1|ND4_15066 NADH dehydrogenase subunit 4 [Hylobates lar] gi|2506937|sp|P03909|NU4M_HYLLA RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|1632811|emb|CAA67637.1| NADH dehydrogenase subunit 4 [Hylobates lar] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/352 (34%), Positives = 190/352 (53%), Gaps = 21/352 (5%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FY+ FE +LIP VII WG ER+ A F Y Sbjct: 93 KLYLSMLIILQVSLIMTFTATELMMFYVLFETTLIPTLVIITRWGNQPERLNAGSYFLFY 152 Query: 171 TFFGSIFMLFAIV----------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 T GS+ +L A++ +M + ++ D ++ MW+A+ +F Sbjct: 153 TLVGSLPLLIALIHTHNTLGSLNIMLLTLSSQNLTDSWS--------NNLMWLAYMMAFM 204 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A Sbjct: 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLM 263 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL +I S + + QTD+K LIAYSS++HM V I GA M++HGL S Sbjct: 264 LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVITAILIQTPWSFTGATVLMIAHGLTS 323 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S LF Y+R H+R + GL +P A + ++AN+ LP T +GE V+M Sbjct: 324 SLLFCLANSNYERTHSRIMILSRGLQALLPLMAFWWLAASLANLALPPTINLLGELFVLM 383 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 + F +NT L V+++ALYSL+++ G + ++ +K RE Sbjct: 384 ASFSWANTTITLTGLNVLITALYSLYMFIMTQRG-TLTHHIKNMKPSLTREN 434 >gi|224036628|gb|ACN37268.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 200/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL P + LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLV-LSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V + I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVMAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|83764113|emb|CAI84973.1| NADH dehydrogenase subunit 4 [Lumbricus terrestris] Length = 452 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 131/393 (33%), Positives = 214/393 (54%), Gaps = 11/393 (2%) Query: 78 HLGVDGISILLVVLTTFLTPFCILSSWKSIQENF--REYMIAFLVLESMVIGAFLSLDML 135 ++ D +S L LT ++T IL+S K + N + +M ++L ++I FLS +++ Sbjct: 52 YMSSDMMSFTLSALTIWVTVMMILASTKIMHLNMYPKMFMTNLVILLIILINCFLSPNLI 111 Query: 136 LFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSI 194 +FYI+FEASLIP V+I WG ER A+ +YT S+ ML + + KT+ + Sbjct: 112 MFYIWFEASLIPTMVLIMTWGYQPERSQASMYLMIYTVAASLPMLMVLCKIFIVSKTA-M 170 Query: 195 IDLYAMSKFP--FSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 + ++ +FP + W+ F +K+PMF H WLP AHV+AP AGS+ LA I+L Sbjct: 171 MPMFMNMEFPMDYPSMPLAWVLTLGGFLVKLPMFTVHLWLPKAHVEAPIAGSMILAAILL 230 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R +L LF ++ + ++ ++L+ + SL+ Q+D+K LIAYSS+ HMG Sbjct: 231 KLGGYGILR-MLSLFHYVAKSTSSLLSSVALVGAVSTSLICFRQSDLKSLIAYSSVGHMG 289 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 + G G + A+ M++HGL SSALF + Y+ HTR +F GL+ P Sbjct: 290 LMVAGALMNSNWGFQAALAMMIAHGLSSSALFVMANMNYEXTHTRSLFLMKGLLVLAPTL 349 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432 + +FT +NM P + + E ++I S+ + S + +L +A Y L++Y + Sbjct: 350 TMWWFLFTASNMAAPPSINLLSEIMLITSILKMSTSAFILLGLTSFFTAAYCLYMYTSMH 409 Query: 433 FG----VSKCEKVQQLKDLSLRERCMVYPIAVL 461 G S ++KDL+L +V I ++ Sbjct: 410 HGPLMLTSNPIPQFKVKDLTLMTMHLVPTILII 442 >gi|296531262|dbj|BAJ08108.1| NADH dehydrogenase subunit 4 [Kinyongia fischeri] Length = 449 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/358 (32%), Positives = 197/358 (55%), Gaps = 10/358 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWK----SIQENFREYMIAFLVLESMVIGAFLSLDM 134 + VD +S L+ L+ +L P IL+S + Q + +++ L++ + A S ++ Sbjct: 56 MSVDQLSSPLLTLSYWLLPVAILASQNHLKHTTQMQKQMFLLCLATLQAFLTVALSSTNL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LF+I FEA+LIP ++I WG ER+ A F YT S+ +L A++ + + + + Sbjct: 116 ILFFIMFEATLIPTMILITRWGNQKERLTAGLYFMFYTLISSVPLLIALLFIKHQMNSLN 175 Query: 194 IIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 I+ + + P + +W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK Sbjct: 176 ILLVTMTNHKPNTT---LWLACTIAFMMKMPLYGLHLWLPKAHVEAPIAGSMALATILLK 232 Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313 +GGYG +R LF + ++ V L+L +I SL+ + Q D+K +IAYSS++HMG Sbjct: 233 LGGYGMMRISPTLFQPQTLHYPFVT--LALWGMIMTSLICLRQPDLKSMIAYSSVSHMGL 290 Query: 314 VTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYA 373 V S + GA M++HG+ SS LF ++Y+R +R + G+ MP A Sbjct: 291 VVTATIIQTPSSLAGATILMVAHGITSSMLFCLANMMYERTGSRMLTTLQGMQTTMPLMA 350 Query: 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 ++ + NM LP T +GE ++I + F S +L ++A+YS+ ++ + Sbjct: 351 TFWLLANLTNMALPPTLNLLGEIMIITATFNWSYPTLILTGSAATITAIYSMHMFSTI 408 >gi|114223921|gb|ABI54789.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114223931|gb|ABI54797.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114223941|gb|ABI54805.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114223946|gb|ABI54809.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114223956|gb|ABI54817.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 195/355 (54%), Gaps = 12/355 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S + + FR+ Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMIMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFTATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP ++I WG +ER+ A F YT GS+ +L A+ + + S+ Sbjct: 119 YILFEATLIPTLIVITRWGNQTERLSAGLYFLFYTLVGSLPLLLALTYL--QSSMGSLNL 176 Query: 197 LYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252 L W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++L Sbjct: 177 LTTNLWLKEMPNSWSTNLLWLACTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLL 236 Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 K+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS++HM Sbjct: 237 KLGGYGMMRITMFLDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHMA 295 Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372 V + I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 296 LVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMLMARGLQTLLPLM 355 Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL++ Sbjct: 356 ATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLYM 410 >gi|224474510|gb|ACN49677.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|224474566|gb|ACN49729.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLITALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|110432974|gb|ABG74199.1| NADH dehydrogenase subunit 4 [Lepilemur ankaranensis] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/387 (33%), Positives = 205/387 (52%), Gaps = 21/387 (5%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+ LT +L P I++S K E + ++ + L+ +I F + ++++F Sbjct: 59 DPLSSPLLALTMWLLPLTIMASQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG +ER+ A F YT GS+ +L A+ + + ++ Sbjct: 119 YILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFI---QNHMGTLN 175 Query: 197 LYAMS----KFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 L+ M+ + P S W MW+A +F IK+P++ H WLP AHV+AP AGS+ LA Sbjct: 176 LFMMTYWSQELPNS---WSSNLMWMACIMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILA 232 Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 I+LK+GGYG +R L PL +++ A L L +I SL+ + QTD+K LIAYSS+ Sbjct: 233 AILLKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSV 291 Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368 +HM V + I GA M++HGL SS LF Y+R+H R + GL Sbjct: 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSL 351 Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 +P + ++ + N+ LP + IGE + M+ F SN +L ++++A YSL++ Sbjct: 352 LPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYML 411 Query: 429 RKVVFGVSKCEKVQQLKDLSLRERCMV 455 G S + L RE ++ Sbjct: 412 AMTQRGKS-LYHMHNLNPSLTRENTLM 437 >gi|95104634|gb|ABF51588.1| NADH dehydrogenase subunit 4 [Colobus angolensis] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 138/447 (30%), Positives = 227/447 (50%), Gaps = 27/447 (6%) Query: 38 LGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTP 97 + ++T I SL F++ S+F I+Y S HL D ++ ++LT + P Sbjct: 25 INLTTHGLIISLIPLLFFNQTNSNF--------INY--STHLSSDPLTTPFLMLTAWFLP 74 Query: 98 FCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153 F ++S + + Y+ + L+ +I F++ +++LFYI FE +LIP +II Sbjct: 75 FMTMASQYHLHNESPSRKKLYLSMMIFLQVSLIMTFMATELILFYILFETTLIPTLIIIT 134 Query: 154 VWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMW 212 WG +ER+ A F YT GS+ +L ++ + + + +I+ L + S Sbjct: 135 RWGIQAERLNAGTYFLFYTLTGSLPLLIMLLYIYNDLGSLNIMLLTLTGQKLTSTWSHNL 194 Query: 213 IAFFC--SFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 + C +F +K+P++ H WLP AHV+AP AGS+ LA + LK+GGYG +R L P+ Sbjct: 195 LGLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVFLKLGGYGMMR-LTPILDPL 253 Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAM 330 ++Y A LSL +I S + + QTD+K LIAYSS++HM V + GA+ Sbjct: 254 TEYMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVASLIQTPWSFTGAI 313 Query: 331 FQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTS 390 M++HGL SS LF Y+R H+R + GL +P A + + N+ LP T Sbjct: 314 ILMIAHGLTSSMLFCLANSNYERTHSRIMMLSRGLQTLLPLMAFWWFMANLTNLALPPTI 373 Query: 391 GFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLR 450 +GE LV+ + F S+ +L ++++ALYSL +Y G + +K R Sbjct: 374 NLMGELLVVTTSFSWSHITIMLTGLNMLITALYSLHMYITTQRG-PLTHHITNIKPSFTR 432 Query: 451 ERCMVY----PIAVL----TVFFGIYP 469 E +++ PI +L ++ G+ P Sbjct: 433 ENVLMFMHLSPIILLSLNPSIIMGLTP 459 >gi|315142101|gb|ADT82059.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142157|gb|ADT82111.1| NADH dehydrogenase subunit 4L [Hylobates lar] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/352 (34%), Positives = 190/352 (53%), Gaps = 21/352 (5%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FY+ FE +LIP VII WG ER+ A F Y Sbjct: 93 KLYLSMLIILQVSLIMTFTATELMMFYVLFETTLIPTLVIITRWGNQPERLNAGSYFLFY 152 Query: 171 TFFGSIFMLFAIV----------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 T GS+ +L A++ +M + ++ D ++ MW+A+ +F Sbjct: 153 TLVGSLPLLIALIHTHNTLGSLNIMLLTLSSQNLTDSWS--------NNLMWLAYMMAFM 204 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A Sbjct: 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLM 263 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL +I S + + QTD+K LIAYSS++HM V I GA M++HGL S Sbjct: 264 LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVITAILIQTPWSFTGATVLMIAHGLTS 323 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S LF Y+R H+R + GL +P A + ++AN+ LP T +GE V+M Sbjct: 324 SLLFCLANSNYERTHSRIMILSRGLQALLPLMAFWWLAASLANLALPPTINLLGELFVLM 383 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 + F +NT L V+++ALYSL+++ G + ++ +K RE Sbjct: 384 ASFSWANTTITLTGLNVLITALYSLYMFIMTQRG-TLTHHIKNMKPSLTREN 434 >gi|289812657|gb|ADD20776.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|289812755|gb|ADD20867.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S V + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSVCLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|51894500|gb|AAU12974.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|215882560|gb|ACJ70959.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|215882574|gb|ACJ70972.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A+V + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALVYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|17985387|gb|AAL54395.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348040|gb|AAP47928.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891505|gb|AAO67004.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|46242464|gb|AAS83325.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|46242478|gb|AAS83338.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|69064525|gb|AAZ02304.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71006867|dbj|BAE07242.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71006999|dbj|BAE07346.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71007016|dbj|BAE07359.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71007214|dbj|BAE07515.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71007916|dbj|BAE08087.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71008458|dbj|BAE10962.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71009715|dbj|BAE12041.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71009820|dbj|BAE12132.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71011600|dbj|BAE09283.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71011638|dbj|BAE09309.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71012026|dbj|BAE09673.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71012331|dbj|BAE09972.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71012749|dbj|BAE10310.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71015119|dbj|BAE13991.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71015833|dbj|BAE14563.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71015902|dbj|BAE14628.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71016470|dbj|BAE15096.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|86450495|gb|ABC96445.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|154100776|gb|ABS58015.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|154100902|gb|ABS58132.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156455549|gb|ABU64750.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|166347195|gb|ABY86856.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168251303|gb|ACA21951.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168251331|gb|ACA21977.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168251555|gb|ACA22185.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168252199|gb|ACA22783.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168252269|gb|ACA22848.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171453553|dbj|BAG15468.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171675285|gb|ACB48647.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|189178942|dbj|BAG38781.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007186|gb|ACM69475.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007326|gb|ACM69605.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007396|gb|ACM69670.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007424|gb|ACM69696.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007480|gb|ACM69748.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007522|gb|ACM69787.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007550|gb|ACM69813.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007578|gb|ACM69839.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007592|gb|ACM69852.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|224036838|gb|ACN37463.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|224037146|gb|ACN37749.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229501610|gb|ACQ74109.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229501778|gb|ACQ74265.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229501792|gb|ACQ74278.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229501806|gb|ACQ74291.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229501974|gb|ACQ74447.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502450|gb|ACQ74889.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229503206|gb|ACQ75591.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229503514|gb|ACQ75877.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229503878|gb|ACQ76215.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|251765841|gb|ACT15941.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|300217976|gb|ADJ80604.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|300217990|gb|ADJ80617.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|320339367|gb|ADW26308.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S V +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHVNNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|209886949|ref|YP_002290801.1| NADH dehydrogenase subunit 4 [Daboia russellii] gi|194395453|gb|ACF60289.1| NADH dehydrogenase subunit 4 [Daboia russellii] Length = 445 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 179/331 (54%), Gaps = 3/331 (0%) Query: 105 KSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYA 163 K + R ++ +L+ + F + + L YI FEA+LIP ++I WG +ER+ A Sbjct: 80 KEPVQRQRVFLATITLLQLFISMTFAAYSLTLMYIMFEATLIPTLILITRWGQQAERLTA 139 Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKI 223 F LYT S+ +L AI+ M T ++ + ++ +W+A +F K+ Sbjct: 140 GTYFMLYTLSTSLPLLTAIIFMNNLTMTPTLF-IQMINPLDQWTALLLWLASLTAFLAKM 198 Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSL 283 P+F H WLP AHV+AP AGS+ LA I+LK+GGYG IR + L L + F P + LSL Sbjct: 199 PIFGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMIRIMQVLPTLKTDMFLPFMV-LSL 257 Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343 I A+L + QTD+K LIAYSSI+HMG V I + + GAM M+SHG SSAL Sbjct: 258 WGAILANLTCLQQTDLKSLIAYSSISHMGLVIAAILIQTQWSLSGAMALMISHGFTSSAL 317 Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403 F Y+R+HTR + GL + +P ++ + N+ +P T F GE L++ S+F Sbjct: 318 FCLANTTYERIHTRILTLTRGLHNILPMATTWWLLTNLMNISMPPTMNFTGELLIMSSLF 377 Query: 404 QNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ ++++A YSL ++ G Sbjct: 378 NWCPATMIILGLSILITATYSLHIFLSTQMG 408 >gi|166851886|ref|YP_001661351.1| NADH dehydrogenase subunit 4 [Daubentonia madagascariensis] gi|14587640|gb|AAK70614.1|AF224640_4 NADH dehydrogenase subunit 4 [Daubentonia madagascariensis] gi|166788114|emb|CAP18018.1| NADH dehydrogenase subunit 4 [Daubentonia madagascariensis] Length = 457 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 128/356 (35%), Positives = 196/356 (55%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSW----KSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P I++S K + Y+ A + L+ +I F ++ LF Sbjct: 57 DPLSTPLLILTAWLLPLMIMASQFHLTKEPLPRKKLYISALITLQLSLIMTFTVTELALF 116 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT----S 192 YI FE +LIP ++I WG ER+ A F YT GS+ +L A++ + KT + Sbjct: 117 YILFETTLIPTLILITRWGNQMERLNAGLYFLFYTLTGSLPLLVALI---YTHKTLGSLN 173 Query: 193 SIIDLYAMSKFPFS-IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L + + P S +W+A +F +K+P++ FH WLP AHV+AP AGS+ LA ++ Sbjct: 174 LPTLLLWLKELPNSWSNTLLWMACIMAFMVKMPLYGFHLWLPKAHVEAPIAGSMVLAAVL 233 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L PL P + L + +I S + + QTD+K LIAYSS++HM Sbjct: 234 LKLGGYGMMRITSILEPLTKHMIYPFLM-LCIWGMIMTSSICLRQTDLKSLIAYSSVSHM 292 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 VT+ I GA M++HGL SS LF Y+R+H+R + GL +P Sbjct: 293 AMVTMAILIQTPWSFMGATTLMIAHGLTSSLLFCLANSNYERIHSRTMLLARGLQTLLPL 352 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++AN+ LP + IGE VIM+ F SN +L V+++ALYS+++ Sbjct: 353 MATWWLLASLANLALPPSINLIGELFVIMTTFSWSNFTIILTGLNVLITALYSMYM 408 >gi|315142115|gb|ADT82072.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142129|gb|ADT82085.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142143|gb|ADT82098.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142171|gb|ADT82124.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142185|gb|ADT82137.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142199|gb|ADT82150.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142213|gb|ADT82163.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142227|gb|ADT82176.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142241|gb|ADT82189.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142255|gb|ADT82202.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142269|gb|ADT82215.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142283|gb|ADT82228.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142296|gb|ADT82240.1| NADH dehydrogenase subunit 4L [Hylobates lar] gi|315142422|gb|ADT82357.1| NADH dehydrogenase subunit 4L [Hylobates pileatus] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/352 (34%), Positives = 190/352 (53%), Gaps = 21/352 (5%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ ++L+ +I F + ++++FY+ FE +LIP VII WG ER+ A F Y Sbjct: 93 KLYLSMLIILQVSLIMTFTATELMMFYVLFETTLIPTLVIITRWGNQPERLNAGSYFLFY 152 Query: 171 TFFGSIFMLFAIV----------VMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA 220 T GS+ +L A++ +M + ++ D ++ MW+A+ +F Sbjct: 153 TLVGSLPLLIALIHTHNTLGSLNIMLLTLSSQNLTDSWS--------NNLMWLAYMMAFM 204 Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF 280 +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A Sbjct: 205 VKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILSPL-TKHMAYPFLM 263 Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340 LSL +I S + + QTD+K LIAYSS++HM V I GA M++HGL S Sbjct: 264 LSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVITAILIQTPWSFTGATVLMIAHGLTS 323 Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400 S LF Y+R H+R + GL +P A + ++AN+ LP T +GE V+M Sbjct: 324 SLLFCLANSNYERTHSRIMILSRGLQALLPLMAFWWLAASLANLALPPTINLLGELFVLM 383 Query: 401 SVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRER 452 + F +NT L V+++ALYSL+++ G + ++ +K RE Sbjct: 384 ASFSWANTTITLTGLNVLITALYSLYMFIMTQRG-TLTHHIKNMKPSLTREN 434 >gi|119035301|gb|ABL60459.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTTAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|121582445|ref|YP_980174.1| NADH dehydrogenase subunit 4 [Takydromus tachydromoides] gi|121309343|dbj|BAF43962.1| NADH dehydrogenase subunit 4 [Takydromus tachydromoides] Length = 460 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/354 (35%), Positives = 197/354 (55%), Gaps = 8/354 (2%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++L+ +L P +++S ++ R +++ ++L++ +I F + + ++F Sbjct: 60 DSVSSPLIILSCWLLPLMVMASQNHLKTEPVNRKRGFLLMLVLLQTTLILTFTTSNFVMF 119 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS--I 194 YI FE +LIP VII WG +ER+ A F YT S+ +L A++ + + +S + Sbjct: 120 YILFETTLIPTLVIITRWGNQAERLSAGLYFLFYTLASSLPLLIALLYLNSKHLHASMEL 179 Query: 195 IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + L S + W+A +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 180 LHLKQPEMLCMSSNFLFWLALLLAFMVKLPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 239 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 GGYG IR L P S P I L+L I+ S + + Q D+K LIAYSS++HMG V Sbjct: 240 GGYGLIRISPTLNPHPSPLMFP-IMILALWGILMTSSICLRQADLKALIAYSSVSHMGLV 298 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 I + GAM M++HGL SSALF Y+R HTR + GL P Sbjct: 299 IAAIILQTPWSLTGAMTLMIAHGLTSSALFTLANTNYERTHTRTLILVRGLQLVFPLMTT 358 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 ++ + NM +P + IGE L+I ++F S+ +L G +L+A+YSL+++ Sbjct: 359 WWLLINLTNMAMPPSINLIGELLIISALFNWSSPTIILTGVGTLLTAVYSLYMF 412 >gi|116242077|gb|ABJ89612.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLTIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|154760706|ref|YP_001425507.1| NADH dehydrogenase subunit 4 [Osteolaemus tetraspis] gi|145315424|gb|ABP62985.1| NADH dehydrogenase subunit 4 [Osteolaemus tetraspis] gi|154425193|emb|CAM35768.1| NADH dehydrogenase subunit 4 [Osteolaemus tetraspis] Length = 457 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 209/366 (57%), Gaps = 12/366 (3%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVLESMVIGAFLSLDM 134 LG D IS L++L+ +L P ++S S+ N R ++ A +L+ ++ F+S D+ Sbjct: 56 LGSDQISTPLLMLSCWLLPLMFMASQSSMLRNPTSQKRLFITALALLQLTLMLVFMSSDL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFY FEA+LIP ++I WG +ER+ A F LYT S+ +L A++ M K T S Sbjct: 116 MLFYTAFEATLIPTLMVIARWGSQTERLGAGMYFLLYTITSSMPLLIAVLWMYNMKGTLS 175 Query: 194 IIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAG 249 II L + P ++ +W +W + +F +KIP++ H WLP AHV+AP AGS+ LA Sbjct: 176 IILLQLLP--PVALMFWANTLLWTSLMLAFLVKIPIYGLHLWLPKAHVEAPIAGSMVLAA 233 Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309 I+LK+GGYG +R L + Y+ + ++L + ++ + QTD+K LIAYSS++ Sbjct: 234 ILLKLGGYGLLRVTNLLTEQTTSYYV-LPMTVALWGSLMTGMICLRQTDLKSLIAYSSVS 292 Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 HMG +T I + + + G+M M++HGL SS LF Y+R H+R + G+ Sbjct: 293 HMGLMTSSILTRNQLAMPGSMTVMVAHGLTSSMLFCLANTTYERTHSRTLLMAQGVQLTT 352 Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYR 429 P A ++ + NM LP T FIGEF +++S+F ++ A+LA ++++YSL ++ Sbjct: 353 PTMASWWLLACLMNMALPPTINFIGEFTLMVSLFNWADITAILAGMSAFITSIYSLHMFS 412 Query: 430 KVVFGV 435 G Sbjct: 413 STQQGT 418 >gi|39981068|gb|AAR33064.1| NADH dehydrogenase subunit 4 [Delphinapterus leucas] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 207/384 (53%), Gaps = 15/384 (3%) Query: 82 DGISILLVVLTTFLTPFCILS-SWKSIQENF---REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++ S ++E + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLMLTMWLLPLTLMAXSIALVKEPLTRKKLYITMLIMLQILLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE++LIP +II WG ER+ A F YT GS+ +L A+ + + + + Sbjct: 119 YIPFESTLIPTLIIITRWGNQPERLNAGLYFLFYTLMGSLPLLVALTYLQNTLGSLNFLL 178 Query: 197 L-YAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 L Y P S W MW+A+ +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 LQYWAQPLPIS---WSNTLMWLAYMLAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L P+ +++ A LSL +I S + + QTD+K LIAYSSI+HM Sbjct: 236 LKLGGYGMLRITSILNPM-TEHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSISHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVITATLIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERTHSRTMILTRGLQIFLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKV 431 A ++ +AN+ LP T IGE LVI S F SN +L + ++++ALYSL++ Sbjct: 355 MATWWLLACLANLALPPTINLIGELLVITSTFSWSNLTIILMATNILITALYSLYMLIMT 414 Query: 432 VFGVSKCEKVQQLKDLSLRERCMV 455 G + L RE ++ Sbjct: 415 QRG-KHTHHINNLTPSFTREHALM 437 >gi|13346993|gb|AAK17333.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348376|gb|AAP48240.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348530|gb|AAP48383.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|69062271|gb|AAZ00211.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71009871|dbj|BAE12171.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71013675|dbj|BAE12795.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71014080|dbj|BAE13120.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71014204|dbj|BAE13224.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71015066|dbj|BAE13952.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71015863|dbj|BAE14589.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71016609|dbj|BAE15213.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|84682638|gb|ABC60805.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|154100664|gb|ABS57911.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156456246|gb|ABU65204.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171452419|dbj|BAG14415.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171452769|dbj|BAG14740.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|226446240|gb|ACO58494.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|297747733|gb|ADI51594.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|298367749|gb|ADI79922.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|316992706|gb|ADU77752.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLITALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|302376043|gb|ADL30384.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A+V + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALVYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|218508132|ref|ZP_03506010.1| NADH dehydrogenase subunit M [Rhizobium etli Brasil 5] Length = 184 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 93/171 (54%), Positives = 126/171 (73%), Gaps = 1/171 (0%) Query: 2 NLPFLSIVTFLPFLGV-FVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60 + P LS VTFLP GV ++L + GR++ G++L + FI SL +W FD Sbjct: 3 DWPILSTVTFLPLAGVVLLLLMNGESESGRKNVLGISLITTVFTFIVSLVIWIGFDNANP 62 Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120 FQM + + W+ YH+GVDGIS+L V+L+TFL PFC+L+SW SI++ +EYMIAFL+ Sbjct: 63 GFQMEQKFDWLGTGIGYHVGVDGISMLFVILSTFLMPFCVLASWLSIEKRLKEYMIAFLI 122 Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYT 171 LE+M+IG F+SLD++LFY+FFEA LIPMF+IIGVWGG +R+YA+YKFFLYT Sbjct: 123 LETMMIGVFVSLDIVLFYVFFEAGLIPMFLIIGVWGGKDRVYASYKFFLYT 173 >gi|114223906|gb|ABI54777.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114223911|gb|ABI54781.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925789|gb|ABS32114.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925821|gb|ABS32139.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925831|gb|ABS32147.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925846|gb|ABS32159.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925861|gb|ABS32171.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/356 (34%), Positives = 200/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + FR+ Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMVMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII- 195 YI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + +++ Sbjct: 119 YILFEATLIPTLIVITRWGNQTERLNAGLYFLFYTLVGSLPLLLALIYLQSSMGSLNLLM 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++ + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 TNLSLKEMPNS---WSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMFLDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERTHSRTMLMARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLYM 410 >gi|69064063|gb|AAZ01875.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|126466767|gb|ABO14155.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171453245|dbj|BAG15182.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|187961085|gb|ACD43889.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|187961155|gb|ACD43954.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502828|gb|ACQ75240.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|301298417|gb|ADK66642.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|313762389|gb|ADR79755.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMMLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|14010689|ref|NP_114330.1| NADH dehydrogenase subunit 4 [Cebus albifrons] gi|13940265|emb|CAC37915.1| NADH subunit 4 [Cebus albifrons] Length = 458 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/393 (33%), Positives = 206/393 (52%), Gaps = 13/393 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D ++ L+ LTT+L P IL++ + I N + Y ++L+ +I F + +++LF Sbjct: 58 DPLTSPLLALTTWLLPLMILATQQHIYSNSLPRKKLYTSMLIILQISLIMTFAATELILF 117 Query: 138 YIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FE +LIP +II WG ER+ A F YT GS+ +L ++ T +I+ Sbjct: 118 YILFETTLIPTLIIITRWGYQPERLNAGSYFLFYTLAGSLPLLITLLYCLNNLGTLNILT 177 Query: 197 LYAMSKFPFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254 + +K + MW+ +F +K+P++ H WLP AHV+AP AGS+ LA I+LK+ Sbjct: 178 MTINTKELLTSWTNNIMWLGCTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 237 Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314 G YG +R + L PL + P + LSL ++ S + + Q D+K LIAYSSI+HM + Sbjct: 238 GSYGMMRIIPTLNPLTEKMSYPFLI-LSLWGMVMTSSICLRQADLKSLIAYSSISHMALI 296 Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374 T+ I + GAM M++H SS LF Y+R+H+R + GL P + Sbjct: 297 TLAILIQTPWSLTGAMLLMVAHAFTSSLLFCLANSNYERIHSRTMMFTRGLQALFPLLTL 356 Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++ +AN+ LP T +GE I++ F SN F ++++ALYSL ++ G Sbjct: 357 WWLLANLANLALPPTINLLGELSTILAAFSWSNFTIAFTGFNMLITALYSLHMFTSTQRG 416 Query: 435 VSKCEKVQQLKDLSLRERCMVY----PIAVLTV 463 +K L RE ++ PI +LT+ Sbjct: 417 -PLTHSTSNVKPLFTRENTLMLMHMAPILLLTL 448 >gi|33411845|emb|CAD60445.1| NADH dehydrogenase subunit 4 [Actinidia polygama] gi|33411847|emb|CAD60446.1| NADH dehydrogenase subunit 4 [Actinidia latifolia] gi|33411849|emb|CAD60447.1| NADH dehydrogenase subunit 4 [Actinidia deliciosa var. deliciosa] gi|33411851|emb|CAD60448.1| NADH dehydrogenase subunit 4 [Actinidia arguta var. arguta] Length = 187 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 100/188 (53%), Positives = 135/188 (71%), Gaps = 2/188 (1%) Query: 113 EYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYT 171 EY+ A L+ E ++I F LD LLFY+F E+ IPMF+IIGVWG +R I AAY+FFLYT Sbjct: 1 EYITASLIREFLMIAVFRILDPLLFYVFPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYT 60 Query: 172 FFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 GS+FML AI+++ ++ T+ + + ++F Q ++WIAFF SFA+K+PM P H W Sbjct: 61 LLGSVFMLLAILLILFQTGTTDL-QILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIW 119 Query: 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASL 291 LP AHV+APTAGSV LAGI+LK+G YG +RF +P+FP A+ F P I+ LS IAIIY SL Sbjct: 120 LPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSL 179 Query: 292 VSMVQTDI 299 ++ Q D+ Sbjct: 180 TTLRQIDL 187 >gi|223011848|gb|ACM73804.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223011974|gb|ACM73921.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223011988|gb|ACM73934.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223012002|gb|ACM73947.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223012016|gb|ACM73960.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223012030|gb|ACM73973.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 202/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S ++ +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHIKNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|114223871|gb|ABI54749.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114223896|gb|ABI54769.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|114223901|gb|ABI54773.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925796|gb|ABS32119.1| NADH dehydrogenase subunit 4 [Avahi laniger] gi|152925801|gb|ABS32123.1| NADH dehydrogenase subunit 4 [Avahi laniger] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/356 (34%), Positives = 200/356 (56%), Gaps = 14/356 (3%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQEN--FRE--YMIAFLVLESMVIGAFLSLDMLLF 137 D +S L++LT +L P +++S + + FR+ Y+ + L+ +I F + +++LF Sbjct: 59 DPLSSPLLMLTMWLLPLMVMASQHHLAKEPWFRKKSYLSLLITLQMFLIMTFSATELILF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSII- 195 YI FEA+LIP ++I WG +ER+ A F YT GS+ +L A++ + + +++ Sbjct: 119 YILFEATLIPTLIVITRWGNQTERLNAGLYFLFYTLVGSLPLLLALIYLQSSMGSLNLLM 178 Query: 196 DLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 ++ + P S W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 179 TNLSLKEMPNS---WSTNLLWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R + L P P + L L +I S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMMRITMFLDPTTKSMAYPFLM-LCLWGMIMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + I GA M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIVAILVQTPWSFMGATALMIAHGLTSSMLFCLANSNYERTHSRTMLMARGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWL 427 A ++ ++ N+ LP + IGE LV ++ F SN +L ++++ALYSL++ Sbjct: 355 MATWWLLASLTNLALPPSINLIGELLVTITSFSWSNITVILIGLNMLITALYSLYM 410 >gi|23193669|gb|AAN14699.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193765|gb|AAN14787.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450500|gb|AAU02315.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|57903754|gb|AAW58160.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151332321|gb|ABR97274.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156078191|gb|ABU47674.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156454910|gb|ABU64169.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156455661|gb|ABU64854.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|160426625|gb|ABX40258.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|171452713|dbj|BAG14688.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|198386427|gb|ACH86334.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|251765715|gb|ACT15824.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|290758961|gb|ADD53846.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|295856292|gb|ADG46564.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|295856306|gb|ADG46577.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|306977161|gb|ADN11678.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLTIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|306976727|gb|ADN11275.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSXLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|177543359|gb|ACB73081.1| NADH dehydrogenase subunit 4 [Piliocolobus kirkii] gi|177543364|gb|ACB73085.1| NADH dehydrogenase subunit 4 [Piliocolobus kirkii] gi|177543374|gb|ACB73093.1| NADH dehydrogenase subunit 4 [Piliocolobus kirkii] gi|177543379|gb|ACB73097.1| NADH dehydrogenase subunit 4 [Piliocolobus kirkii] Length = 459 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/357 (33%), Positives = 197/357 (55%), Gaps = 8/357 (2%) Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDM 134 L D ++ L++LT +L P I++S + + Y+ + L+ +I F++ ++ Sbjct: 56 LSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPPRKKLYLSMMVFLQISLIMTFMATEL 115 Query: 135 LLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193 +LFYI FE +LIP +II WG +ER+ A F YT GS+ +L ++ + + + Sbjct: 116 ILFYILFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIMLMYIYNSLGSLN 175 Query: 194 IIDLY-AMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIM 251 II L K + + + W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++ Sbjct: 176 IILLTITAQKLTTTWSHSLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVL 235 Query: 252 LKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 LK+GGYG +R L L PL ++Y A LSL ++ S + + QTD+K LIAYSS++HM Sbjct: 236 LKLGGYGMLRLTLILDPL-TEYMAYPFLMLSLWGMVMTSSICLRQTDLKSLIAYSSVSHM 294 Query: 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPR 371 V + GA+ M++HGL SS LF Y+R H+R + GL +P Sbjct: 295 ALVIVASLIQTPWSFTGAIVLMIAHGLTSSMLFCLANSNYERTHSRIMMLTRGLQTLLPL 354 Query: 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428 ++ + N+ LP T +GE LV+ + F S+ L ++++ALYSL+++ Sbjct: 355 MTFWWLMANLTNLALPPTINLVGELLVVTTSFSWSHITITLMGLNMLITALYSLYMF 411 >gi|9828547|gb|AAG00231.1| NADH dehydrogenase subunit 4 [Ochotona dauurica dauurica] Length = 395 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/355 (35%), Positives = 204/355 (57%), Gaps = 12/355 (3%) Query: 89 VVLTTFLTPFCILSSWKSIQEN---FREYMIAFLVL-ESMVIGAFLSLDMLLFYIFFEAS 144 ++LT +L P +++S + + ++ I+ LVL + +I F + ++++FYI FEA+ Sbjct: 1 LILTFWLLPLMLIASQNHLSKESLLRKKLFISMLVLLQIFLIMTFSATELIMFYILFEAT 60 Query: 145 LIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF 203 LIP +II WG +ER+ A F YT GS+ +L A++ + T + + + ++ Sbjct: 61 LIPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPLLVALLYIHNTTGTLNFLVIQILTT- 119 Query: 204 PFSIQYW----MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC 259 P + W +W+A +F +K+P++ H WLP AHV+AP AGS+ LA ++LK+GGYG Sbjct: 120 PLT-DSWSNSLLWLACMMAFLVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGM 178 Query: 260 IRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIF 319 +R L L P+ ++Y A LSL ++ S + + QTD+K LIAYSS++HM V + I Sbjct: 179 MRLTLILNPV-TEYMAYPFLLLSLWGMVMTSSICLRQTDLKSLIAYSSVSHMALVIVAIL 237 Query: 320 SGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 GA M++HGL SS LF Y+R+H+R + GL +P A ++ Sbjct: 238 IQTPWSFMGATALMIAHGLTSSMLFCLANTNYERIHSRTMILARGLQTILPLMAAWWLLA 297 Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434 ++AN+ LP + IGE LVI+S F SN +LA ++++ALY+L++ G Sbjct: 298 SLANLALPPSINLIGELLVIISSFSWSNLTIILAGTNMLITALYTLYMLSTTQRG 352 >gi|32891113|gb|AAO66640.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|60257682|gb|AAX15585.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71007305|dbj|BAE07606.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71009581|dbj|BAE11937.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71012917|dbj|BAE10440.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71013892|dbj|BAE12964.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|71015292|dbj|BAE14134.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|83266619|gb|ABB98487.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|133712252|gb|ABO36883.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|133712266|gb|ABO36896.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|133712280|gb|ABO36909.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151332643|gb|ABR97573.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|154100930|gb|ABS58158.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|154101014|gb|ABS58236.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168251527|gb|ACA22159.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168251695|gb|ACA22315.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168252017|gb|ACA22614.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168252045|gb|ACA22640.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168252143|gb|ACA22731.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168252255|gb|ACA22835.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168252283|gb|ACA22861.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168252311|gb|ACA22887.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|168252325|gb|ACA22900.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|189165880|gb|ACD78159.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|211997733|gb|ACJ14817.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007116|gb|ACM69410.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007144|gb|ACM69436.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007158|gb|ACM69449.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007200|gb|ACM69488.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007228|gb|ACM69514.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007242|gb|ACM69527.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007256|gb|ACM69540.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007270|gb|ACM69553.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007298|gb|ACM69579.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007312|gb|ACM69592.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007368|gb|ACM69644.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007382|gb|ACM69657.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007410|gb|ACM69683.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007438|gb|ACM69709.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007452|gb|ACM69722.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007466|gb|ACM69735.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007494|gb|ACM69761.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007508|gb|ACM69774.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007704|gb|ACM69956.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007788|gb|ACM70034.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007802|gb|ACM70047.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007816|gb|ACM70060.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007844|gb|ACM70086.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007858|gb|ACM70099.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007900|gb|ACM70138.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007914|gb|ACM70151.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007928|gb|ACM70164.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223007984|gb|ACM70216.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223010658|gb|ACM72699.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|223010672|gb|ACM72712.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|224036922|gb|ACN37541.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|224037076|gb|ACN37684.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|226407676|gb|ACO53052.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|226407690|gb|ACO53065.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229501652|gb|ACQ74148.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229501680|gb|ACQ74174.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229501834|gb|ACQ74317.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502058|gb|ACQ74525.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502100|gb|ACQ74564.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502142|gb|ACQ74603.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502156|gb|ACQ74616.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502170|gb|ACQ74629.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502282|gb|ACQ74733.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502310|gb|ACQ74759.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502338|gb|ACQ74785.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502366|gb|ACQ74811.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502492|gb|ACQ74928.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502590|gb|ACQ75019.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502674|gb|ACQ75097.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502772|gb|ACQ75188.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502786|gb|ACQ75201.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502856|gb|ACQ75266.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502870|gb|ACQ75279.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502884|gb|ACQ75292.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229502968|gb|ACQ75370.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229503010|gb|ACQ75409.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229503038|gb|ACQ75435.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229503416|gb|ACQ75786.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229503444|gb|ACQ75812.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229503458|gb|ACQ75825.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|259122336|gb|ACV92349.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|260764160|gb|ACX49148.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|262344120|gb|ACY55877.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|294799786|gb|ADF42116.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|294799800|gb|ADF42129.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|296041230|gb|ADG85578.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|296041244|gb|ADG85591.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|302377079|gb|ADL31346.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|309400113|gb|ADO79243.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAIILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|255361339|gb|ACU09530.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 127/365 (34%), Positives = 202/365 (55%), Gaps = 13/365 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 VFFGI 467 + I Sbjct: 449 LNXDI 453 >gi|316926132|gb|ADU58002.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQVSLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|13346926|gb|AAK17242.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|69062789|gb|AAZ00692.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLTIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|187250372|ref|YP_001874862.1| NADH dehydrogenase subunit 4 [Panthera tigris] gi|313768485|ref|YP_004062162.1| NADH dehydrogenase subunit 4 [Panthera tigris amoyensis] gi|145558793|gb|ABP73318.1| NADH dehydrogenase subunit 4 [Panthera tigris] gi|301506381|gb|ADK77671.1| NADH dehydrogenase subunit 4 [Panthera tigris amoyensis] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 127/394 (32%), Positives = 215/394 (54%), Gaps = 35/394 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETLARKKLYITMLIILQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYI---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWAKPISATWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPTTNQMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T I E V+++ F SN L ++++ALY+ Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIAELFVVVASFSWSNMTITLMGTNIIITALYT 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLS---LRERCMV 455 L++ + + + +K+++ RE ++ Sbjct: 408 LYM----LITTQRGKYTHHIKNINPSFTRENALM 437 >gi|133854761|gb|ABO39435.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|71016857|dbj|BAE15421.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP VII WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLVIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ LYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTTLYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|177543369|gb|ACB73089.1| NADH dehydrogenase subunit 4 [Piliocolobus kirkii] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 201/365 (55%), Gaps = 10/365 (2%) Query: 71 IDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVI 126 I+Y S L D ++ L++LT +L P I++S + + Y+ + L+ +I Sbjct: 50 INY--STLLSSDPLTTPLLMLTAWLLPLMIMASQYHLHNESPPRKKLYLSMMVFLQISLI 107 Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVM 185 F++ +++LFYI FE +LIP +II WG +ER+ A F YT GS+ +L ++ + Sbjct: 108 MTFMATELILFYILFETTLIPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIMLMYI 167 Query: 186 CWEKKTSSIIDLY-AMSKFPFSIQYWM-WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + +II L K + + + W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 168 YNSLGSLNIILLTITAQKLTTTWSHSLTWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA ++LK+GGYG +R L L PL ++Y A LSL ++ S + + QTD+K LI Sbjct: 228 SMVLAAVLLKLGGYGMLRLTLILDPL-TEYMAYPFLMLSLWGMVMTSSICLRQTDLKSLI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HM V + GA+ M++HGL SS LF Y+R H+R + Sbjct: 287 AYSSVSHMALVIVASLIQTPWSFTGAIVLMIAHGLTSSMLFCLANSNYERTHSRIMMLTR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 GL +P ++ + N+ LP T +GE LV+ + F S+ L ++++ALY Sbjct: 347 GLQTLLPLMTFWWLMANLTNLALPPTINLVGELLVVTTSFSWSHITITLMGLNMLITALY 406 Query: 424 SLWLY 428 SL+++ Sbjct: 407 SLYMF 411 >gi|222052606|dbj|BAH16083.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|222052760|dbj|BAH16226.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 460 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S V +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHVNNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|269812023|gb|ACZ44341.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPXLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|69061935|gb|AAY99899.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|84682358|gb|ABC60545.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A+V + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALVYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVAAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|119035539|gb|ABL60680.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|119380339|gb|ABL73370.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLAHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|310777203|gb|ADP23436.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|13272748|gb|AAK17385.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347106|gb|AAK17801.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347111|gb|AAK17814.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|133854969|gb|ABO39628.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151329148|gb|ABR94328.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156457639|gb|ABU66306.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156458051|gb|ABU66513.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156458079|gb|ABU66539.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156460175|gb|ABU67972.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|229503696|gb|ACQ76046.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|283047155|gb|ADB05163.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|302376995|gb|ADL31268.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|223016048|gb|ACM77704.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 199/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL P + LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMSYPFLV-LSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|133854607|gb|ABO39292.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLIFLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 RLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|23193513|gb|AAN14556.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|51895298|gb|AAU13715.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151329833|gb|ABR94964.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156077449|gb|ABU46985.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|25057537|ref|NP_739707.1| NADH dehydrogenase subunit 4 [Lamprogrammus niger] gi|25005589|dbj|BAC23251.1| NADH dehydrogenase subunit 4 [Lamprogrammus niger] Length = 460 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 209/370 (56%), Gaps = 10/370 (2%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGA 128 Y + ++ +D +S L+VLT +L P IL+S + R Y+ L+ +I A Sbjct: 51 YTLNPYMALDPLSTPLLVLTCWLLPLMILASQNHTRTEPINRQRTYITLLTSLQFFLILA 110 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + ++++FY+ FEA+LIP +II WG +ER+ A F YT GS+ +L +++++ Sbjct: 111 FSATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVSLLLLQN 170 Query: 188 EKKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 + T S++ L + ++ + W W +F +K+P++ H WLP AHV+AP AGS Sbjct: 171 DTGTLSLLTLQFSKTIELTSYADKLW-WAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGS 229 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R ++ L PL + P I F +L +I + + QTD+K LIA Sbjct: 230 MVLAAVLLKLGGYGMMRMMMVLEPLTKEMSYPFIVF-ALWGVIMTGSICLRQTDLKSLIA 288 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HMG V GI G GA+ M++HGL SSALF Y+R H+R + G Sbjct: 289 YSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMVLARG 348 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P + ++AN+ LP +GE ++I+S+F SN VL G +++A YS Sbjct: 349 LQTLLPLMSAWWFAASLANLALPPLPNLMGELMIIVSLFNWSNWTLVLTGAGTLITAGYS 408 Query: 425 LWLYRKVVFG 434 L+++ G Sbjct: 409 LYMFLTTQRG 418 >gi|295856600|gb|ADG46850.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|156457807|gb|ABU66462.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVAAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLITALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|13347018|gb|AAK17489.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193633|gb|AAN14666.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|69064021|gb|AAZ01836.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|156078163|gb|ABU47648.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|56548673|ref|YP_161282.1| NADH dehydrogenase subunit 4 [Potorous tridactylus] gi|118200122|emb|CAG26442.2| NADH dehydrogenase subunit 4 [Potorous tridactylus] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 131/370 (35%), Positives = 204/370 (55%), Gaps = 16/370 (4%) Query: 68 YHWIDYFCSYHLG--VDGISILLVVLTTFLTPFCILSSWKSIQEN----FREYMIAFLVL 121 YH D SY +D +S L+VL+ +L P +++S + + + Y+ ++L Sbjct: 43 YHSSDLGYSYSNSFYMDSLSGPLIVLSCWLLPLMMIASQNHLMKEPLSRKKTYLTMLIIL 102 Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLF 180 +S +I AF S ++++FYI FE +LIP +II WG +ER+ A F YT GS+ +L Sbjct: 103 QSSLIMAFSSSELIMFYILFETTLIPTLIIITRWGNQNERLNAGLYFLFYTLVGSLPLLV 162 Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM-----WIAFFCSFAIKIPMFPFHTWLPNA 235 A++ + + + +S P ++ + M W A +F +K+PM+ H WLP A Sbjct: 163 ALLY---LQNNMGTLHILTVSMNPMTLNFSMPNSILWYACMTAFMVKMPMYGLHLWLPKA 219 Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295 HV+AP AGS+ LA I+LK+GGYG +R + P+ Q P + LS+ +I S + + Sbjct: 220 HVEAPIAGSMVLAAILLKLGGYGIMRITIFTEPVTMQLSYPFMI-LSMWGMIMTSSICLR 278 Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355 QTD+K LIAYSS++HMG V I GA M++HGL SS LF Y+R+H Sbjct: 279 QTDLKSLIAYSSVSHMGLVIIAALMQSTLSFMGATALMIAHGLTSSMLFCLANTNYERIH 338 Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415 +R + GL +P ++ ++AN+ LP T +GE +VI+S F SN +L Sbjct: 339 SRTMILARGLQMILPLMCTWWLLASLANLALPPTINLLGELMVIISSFSWSNFTIILLGT 398 Query: 416 GVVLSALYSL 425 V++A+YSL Sbjct: 399 NTVITAMYSL 408 >gi|55583354|ref|YP_138262.1| NADH dehydrogenase subunit 4 [Bombina bombina] gi|46981589|gb|AAT07843.1| NADH dehydrogenase subunit 4 [Bombina bombina] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/404 (32%), Positives = 214/404 (52%), Gaps = 17/404 (4%) Query: 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ----ENFREYMIAFLVLESMVIGA 128 +F + +D +S L++L+ +L P I++S + R Y+ + L+ ++ A Sbjct: 50 HFTTQVSSIDQLSSPLLILSCWLLPIMIIASQNHLTLEPLNRQRTYVTTLVSLQIALVVA 109 Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCW 187 F + +++LFYI FE +LIP ++I WG +ER+ A F YT GS+ +L A++ + Sbjct: 110 FSATELILFYITFEITLIPTLMLITRWGNQAERLNAGIYFLFYTLMGSLPLLVALLSL-- 167 Query: 188 EKKTSSIIDLYAMSKFPFSIQYWM----WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243 + ++ L P + W W+A +F +K+P++ H WLP AHV+AP AG Sbjct: 168 QNSEGTLSTLLMQLNTPLMMSSWANKAWWLACLIAFMVKMPLYGTHLWLPKAHVEAPIAG 227 Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303 S+ LA I+LK+GGYG +R + L P + A L+L +I S + + QTD+K +I Sbjct: 228 SMVLAAILLKLGGYGILRISM-LLPTSMSNLAYPFIILALWGVIMTSSICLRQTDLKSMI 286 Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363 AYSS++HMG V GA+ M++HGLVSSALF Y+R H+R + Sbjct: 287 AYSSVSHMGLVIAAAMIQTPWSFSGAIVLMVAHGLVSSALFCLANTNYERTHSRTLLLSR 346 Query: 364 GLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALY 423 G+ +P ++ +ANM LP + +GE V++++F SN +L G +L+A Y Sbjct: 347 GMQIILPLMGTWWLLSNLANMALPPSPNLMGELSVMIAMFNWSNWTILLTGTGTLLTAAY 406 Query: 424 SLWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLTV 463 SL+++ G + + + L RE + + PIA L + Sbjct: 407 SLYMFLMTQRGPTP-QHLTALNPTHTREHTLMLLHLLPIAPLII 449 >gi|295856334|gb|ADG46603.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|229503738|gb|ACQ76085.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLXIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|222052550|dbj|BAH16031.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 460 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLITALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|315114774|gb|ADT80338.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 199/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL P + LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLV-LSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|71010400|dbj|BAE12574.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 458 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|55139552|gb|AAV41402.1| NADH dehydrogenase subunit 4 [Panthera tigris] Length = 456 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 127/394 (32%), Positives = 215/394 (54%), Gaps = 35/394 (8%) Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENF----REYMIAFLVLESMVIGAFLSLDMLLF 137 D +S L+VLTT+L P +++S + + + Y+ ++L+ ++I F + ++++F Sbjct: 59 DSLSAPLLVLTTWLLPLMLMASQSHLSKETLARKKLYITMLIILQLLLIMTFTATELIMF 118 Query: 138 YIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196 YI FEA+LIP +II WG +ER+ A F YT GS+ +L A++ + + T+ ++ Sbjct: 119 YILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYI---QNTTGTLN 175 Query: 197 LYAMSKFPFSIQYW------------MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244 IQYW +W+A +F +K+P++ H WLP AHV+AP AGS Sbjct: 176 F-------LIIQYWAKPISATWSNIFLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGS 228 Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304 + LA ++LK+GGYG +R + L P +Q P + LSL +I S + + QTD+K LIA Sbjct: 229 MVLAAVLLKLGGYGMMRITILLNPTTNQMAYPFMM-LSLWGMIMTSSICLRQTDLKSLIA 287 Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364 YSS++HM V + + GA M++HGL SS LF Y+R+H+R + G Sbjct: 288 YSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSVLFCLANSNYERIHSRTMILARG 347 Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424 L +P A ++ ++AN+ LP T I E V+++ F SN L ++++ALY+ Sbjct: 348 LQTILPLMAAWWLLASLANLALPPTINLIAELFVVVASFSWSNMTITLMGTNIIITALYT 407 Query: 425 LWLYRKVVFGVSKCEKVQQLKDLS---LRERCMV 455 L++ + + + +K+++ RE ++ Sbjct: 408 LYM----LITTQRGKYTHHIKNINPSFTRENALM 437 >gi|71011448|dbj|BAE09153.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|119034839|gb|ABL60030.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|119034895|gb|ABL60082.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|119035133|gb|ABL60303.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|119035679|gb|ABL60810.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|151334531|gb|ABR99326.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|187960917|gb|ACD43733.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|197254047|gb|ACH55884.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|283049427|gb|ADB07361.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|296801940|gb|ADH51458.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 199/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL P + LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLV-LSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM----VYPIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE + ++PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLFPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|32892347|gb|AAP89071.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|298110589|gb|ADI57563.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|189473792|gb|ACD99799.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|259122252|gb|ACV92271.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|292596782|gb|ADE33256.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|292596992|gb|ADE33451.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|292597104|gb|ADE33555.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|133854691|gb|ABO39370.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|94980714|gb|ABF48986.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|94981204|gb|ABF49441.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 199/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL P + LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLV-LSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTREHTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|302377233|gb|ADL31489.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|259122168|gb|ACV92193.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I AF + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMAFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ LYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTTLYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|109289524|gb|ABG29268.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|109289538|gb|ABG29281.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|116241979|gb|ABJ89521.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|116241993|gb|ABJ89534.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|116242007|gb|ABJ89547.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|116242021|gb|ABJ89560.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|116242035|gb|ABJ89573.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|116242049|gb|ABJ89586.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|116242063|gb|ABJ89599.1| NADH dehydrogenase subunit 4 [Homo sapiens] Length = 459 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 201/361 (55%), Gaps = 13/361 (3%) Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ERIYAAYKFFLY 170 + Y+ + L+ +I F + ++++FYIFFE +LIP II WG ER+ A F Y Sbjct: 93 KLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFY 152 Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYW----MWIAFFCSFAIKIPMF 226 T GS+ +L A++ + +I+ L ++ S W MW+A+ +F +K+P++ Sbjct: 153 TLVGSLPLLIALIYTHNTLGSLNIL-LLTLTAQELS-NSWANNLMWLAYTMAFMVKMPLY 210 Query: 227 PFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286 H WLP AHV+AP AGS+ LA ++LK+GGYG +R L L PL +++ A LSL + Sbjct: 211 GLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL-TKHMAYPFLVLSLWGM 269 Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFC 346 I S + + QTD+K LIAYSSI+HM V I GA+ M++HGL SS LF Sbjct: 270 IMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCL 329 Query: 347 VGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406 Y+R H+R + GL +P A ++ ++AN+ LP T +GE V+++ F S Sbjct: 330 ANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWS 389 Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY----PIAVLT 462 N +L ++++ALYSL+++ +G S + +K RE +++ PI +L+ Sbjct: 390 NITLLLTGLNMLVTALYSLYMFTTTQWG-SLTHHINNMKPSFTRENTLMFMHLSPILLLS 448 Query: 463 V 463 + Sbjct: 449 L 449 >gi|196123588|ref|YP_002124311.1| NADH dehydrogenase subunit 4 [Homo sapiens neanderthalensis] gi|251831116|ref|YP_003024035.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|128748|sp|P03905|NU4M_HUMAN RecName: Full=NADH-ubiquinone oxidoreductase chain 4; AltName: Full=NADH dehydrogenase subunit 4 gi|506833|gb|AAB58952.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13272566|gb|AAK17216.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13272608|gb|AAK17255.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13272762|gb|AAK17398.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13272776|gb|AAK17411.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13272832|gb|AAK17463.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13272944|gb|AAK17567.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13273084|gb|AAK17697.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13346914|gb|AAK17229.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13346937|gb|AAK17268.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13346941|gb|AAK17281.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13346945|gb|AAK17294.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13346989|gb|AAK17320.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347002|gb|AAK17359.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347006|gb|AAK17372.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347010|gb|AAK17437.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347014|gb|AAK17450.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347022|gb|AAK17502.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347026|gb|AAK17515.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347030|gb|AAK17528.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347034|gb|AAK17554.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347054|gb|AAK17606.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347058|gb|AAK17619.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347062|gb|AAK17645.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347066|gb|AAK17658.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347082|gb|AAK17723.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347086|gb|AAK17736.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347090|gb|AAK17749.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347094|gb|AAK17762.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347098|gb|AAK17775.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347102|gb|AAK17788.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347115|gb|AAK17827.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347119|gb|AAK17840.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347406|gb|AAK17853.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347634|gb|AAK17866.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347939|gb|AAK17879.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|13347943|gb|AAK17892.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985399|gb|AAL54406.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985413|gb|AAL54419.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985427|gb|AAL54432.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985441|gb|AAL54445.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985455|gb|AAL54458.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985469|gb|AAL54471.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985483|gb|AAL54484.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985497|gb|AAL54497.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985511|gb|AAL54510.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985525|gb|AAL54523.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985553|gb|AAL54549.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985567|gb|AAL54562.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985581|gb|AAL54575.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985595|gb|AAL54588.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985609|gb|AAL54601.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985623|gb|AAL54614.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985637|gb|AAL54627.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985651|gb|AAL54640.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985665|gb|AAL54653.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985679|gb|AAL54666.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985693|gb|AAL54679.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985707|gb|AAL54692.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985721|gb|AAL54705.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985735|gb|AAL54718.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985749|gb|AAL54731.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985763|gb|AAL54744.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985777|gb|AAL54757.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985791|gb|AAL54770.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|17985805|gb|AAL54783.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193501|gb|AAN14545.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193525|gb|AAN14567.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193549|gb|AAN14589.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193561|gb|AAN14600.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193573|gb|AAN14611.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193585|gb|AAN14622.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193597|gb|AAN14633.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193609|gb|AAN14644.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193621|gb|AAN14655.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193645|gb|AAN14677.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193657|gb|AAN14688.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193693|gb|AAN14721.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193705|gb|AAN14732.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193717|gb|AAN14743.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193729|gb|AAN14754.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193741|gb|AAN14765.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193753|gb|AAN14776.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193777|gb|AAN14798.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193789|gb|AAN14809.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193801|gb|AAN14820.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193813|gb|AAN14831.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193825|gb|AAN14842.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193837|gb|AAN14853.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193849|gb|AAN14864.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193861|gb|AAN14875.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193885|gb|AAN14897.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193897|gb|AAN14908.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193909|gb|AAN14919.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193921|gb|AAN14930.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193933|gb|AAN14941.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|23193945|gb|AAN14952.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|26279182|gb|AAL48338.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|26279188|gb|AAL48341.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|26279190|gb|AAL48342.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|26279192|gb|AAL48343.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|26279194|gb|AAL48344.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|26279196|gb|AAL48345.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|26279198|gb|AAL48346.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|26279200|gb|AAL48347.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690402|gb|AAO88289.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690416|gb|AAO88302.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690444|gb|AAO88328.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690472|gb|AAO88354.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690486|gb|AAO88367.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690500|gb|AAO88380.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690528|gb|AAO88406.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690542|gb|AAO88419.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690556|gb|AAO88432.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690570|gb|AAO88445.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690584|gb|AAO88458.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690598|gb|AAO88471.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690640|gb|AAO88510.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690668|gb|AAO88536.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690682|gb|AAO88549.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690696|gb|AAO88562.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690710|gb|AAO88575.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690724|gb|AAO88588.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690738|gb|AAO88601.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690752|gb|AAO88614.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690766|gb|AAO88627.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690794|gb|AAO88653.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690822|gb|AAO88679.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690836|gb|AAO88692.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690850|gb|AAO88705.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690864|gb|AAO88718.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690878|gb|AAO88731.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690892|gb|AAO88744.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690906|gb|AAO88757.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690920|gb|AAO88770.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690934|gb|AAO88783.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690948|gb|AAO88796.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690962|gb|AAO88809.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690976|gb|AAO88822.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29690990|gb|AAO88835.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29691004|gb|AAO88848.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29691018|gb|AAO88861.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29691032|gb|AAO88874.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29691046|gb|AAO88887.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|29691060|gb|AAO88900.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32347998|gb|AAP47889.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348012|gb|AAP47902.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348054|gb|AAP47941.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348068|gb|AAP47954.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348096|gb|AAP47980.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348110|gb|AAP47993.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348124|gb|AAP48006.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348138|gb|AAP48019.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348152|gb|AAP48032.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348166|gb|AAP48045.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348194|gb|AAP48071.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348236|gb|AAP48110.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348250|gb|AAP48123.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348264|gb|AAP48136.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348278|gb|AAP48149.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348306|gb|AAP48175.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348320|gb|AAP48188.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348334|gb|AAP48201.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348348|gb|AAP48214.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348362|gb|AAP48227.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348390|gb|AAP48253.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348404|gb|AAP48266.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348418|gb|AAP48279.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348432|gb|AAP48292.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348446|gb|AAP48305.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348460|gb|AAP48318.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348474|gb|AAP48331.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348502|gb|AAP48357.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348516|gb|AAP48370.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348544|gb|AAP48396.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348558|gb|AAP48409.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348572|gb|AAP48422.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348585|gb|AAP48434.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348599|gb|AAP48447.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348613|gb|AAP48460.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348627|gb|AAP48473.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348641|gb|AAP48486.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348655|gb|AAP48499.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348669|gb|AAP48512.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348683|gb|AAP48525.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348697|gb|AAP48538.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32348711|gb|AAP48551.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891099|gb|AAO66627.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891127|gb|AAO66653.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891141|gb|AAO66666.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891155|gb|AAO66679.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891169|gb|AAO66692.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891197|gb|AAO66718.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891211|gb|AAO66731.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891239|gb|AAO66757.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891253|gb|AAO66770.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891267|gb|AAO66783.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891281|gb|AAO66796.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891323|gb|AAO66835.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891337|gb|AAO66848.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891351|gb|AAO66861.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891365|gb|AAO66874.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891379|gb|AAO66887.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891393|gb|AAO66900.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891407|gb|AAO66913.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891435|gb|AAO66939.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891449|gb|AAO66952.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891463|gb|AAO66965.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891477|gb|AAO66978.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891491|gb|AAO66991.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891533|gb|AAO67030.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891547|gb|AAO67043.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891561|gb|AAO67056.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891575|gb|AAO67069.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891589|gb|AAO67082.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891602|gb|AAO67094.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891616|gb|AAO67107.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891630|gb|AAO67120.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891658|gb|AAO67146.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891686|gb|AAO67172.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891700|gb|AAO67185.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891714|gb|AAO67198.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891728|gb|AAO67211.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891742|gb|AAO67224.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32891756|gb|AAO67237.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892319|gb|AAP89045.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892333|gb|AAP89058.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892361|gb|AAP89084.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892375|gb|AAP89097.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892389|gb|AAP89110.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892403|gb|AAP89123.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892417|gb|AAP89136.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892431|gb|AAP89149.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892445|gb|AAP89162.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892459|gb|AAP89175.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892473|gb|AAP89188.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892487|gb|AAP89201.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892501|gb|AAP89214.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892515|gb|AAP89227.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892529|gb|AAP89240.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892543|gb|AAP89253.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892557|gb|AAP89266.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892571|gb|AAP89279.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892585|gb|AAP89292.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892599|gb|AAP89305.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892613|gb|AAP89318.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892627|gb|AAP89331.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892641|gb|AAP89344.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892655|gb|AAP89357.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892669|gb|AAP89370.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892683|gb|AAP89383.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892697|gb|AAP89396.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892725|gb|AAP89422.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892739|gb|AAP89435.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892753|gb|AAP89448.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892767|gb|AAP89461.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892781|gb|AAP89474.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892795|gb|AAP89487.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892809|gb|AAP89500.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892823|gb|AAP89513.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892837|gb|AAP89526.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892851|gb|AAP89539.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892865|gb|AAP89552.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892879|gb|AAP89565.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892893|gb|AAP89578.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892907|gb|AAP89591.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892921|gb|AAP89604.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892935|gb|AAP89617.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892949|gb|AAP89630.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892963|gb|AAP89643.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892977|gb|AAP89656.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32892991|gb|AAP89669.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893005|gb|AAP89682.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893019|gb|AAP89695.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893033|gb|AAP89708.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893047|gb|AAP89721.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893061|gb|AAP89734.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893075|gb|AAP89747.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893089|gb|AAP89760.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893103|gb|AAP89773.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893117|gb|AAP89786.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893131|gb|AAP89799.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893145|gb|AAP89812.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893159|gb|AAP89825.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893173|gb|AAP89838.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893187|gb|AAP89851.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893201|gb|AAP89864.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893215|gb|AAP89877.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893229|gb|AAP89890.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893243|gb|AAP89903.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893257|gb|AAP89916.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893271|gb|AAP89929.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893285|gb|AAP89942.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893299|gb|AAP89955.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893313|gb|AAP89968.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893327|gb|AAP89981.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893341|gb|AAP89994.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893355|gb|AAP90007.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893369|gb|AAP90020.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893383|gb|AAP90033.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893397|gb|AAP90046.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893411|gb|AAP90059.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893425|gb|AAP90072.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893439|gb|AAP90085.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893453|gb|AAP90098.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893467|gb|AAP90111.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893481|gb|AAP90124.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893495|gb|AAP90137.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893509|gb|AAP90150.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893523|gb|AAP90163.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893537|gb|AAP90176.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893551|gb|AAP90189.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893565|gb|AAP90202.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893579|gb|AAP90215.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893593|gb|AAP90228.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893607|gb|AAP90241.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893621|gb|AAP90254.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893635|gb|AAP90267.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893649|gb|AAP90280.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893663|gb|AAP90293.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893677|gb|AAP90306.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893691|gb|AAP90319.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893705|gb|AAP90332.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893719|gb|AAP90345.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893733|gb|AAP90358.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893747|gb|AAP90371.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893761|gb|AAP90384.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893775|gb|AAP90397.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893789|gb|AAP90410.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893803|gb|AAP90423.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893817|gb|AAP90436.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893831|gb|AAP90449.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893845|gb|AAP90462.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893859|gb|AAP90475.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893873|gb|AAP90488.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893887|gb|AAP90501.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893901|gb|AAP90514.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893915|gb|AAP90527.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893929|gb|AAP90540.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893943|gb|AAP90553.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893957|gb|AAP90566.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893971|gb|AAP90579.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893985|gb|AAP90592.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32893999|gb|AAP90605.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894013|gb|AAP90618.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894027|gb|AAP90631.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894041|gb|AAP90644.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894055|gb|AAP90657.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894069|gb|AAP90670.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894083|gb|AAP90683.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894097|gb|AAP90696.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894111|gb|AAP90709.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894125|gb|AAP90722.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894139|gb|AAP90735.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894153|gb|AAP90748.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894167|gb|AAP90761.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894181|gb|AAP90774.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894195|gb|AAP90787.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894209|gb|AAP90800.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894223|gb|AAP90813.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894237|gb|AAP90826.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894251|gb|AAP90839.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894265|gb|AAP90852.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894279|gb|AAP90865.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894293|gb|AAP90878.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894307|gb|AAP90891.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894321|gb|AAP90904.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894335|gb|AAP90917.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894349|gb|AAP90930.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894363|gb|AAP90943.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894377|gb|AAP90956.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894391|gb|AAP90969.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894447|gb|AAP91021.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894461|gb|AAP91034.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894475|gb|AAP91047.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894489|gb|AAP91060.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894503|gb|AAP91073.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894517|gb|AAP91086.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894531|gb|AAP91099.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894545|gb|AAP91112.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894559|gb|AAP91125.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894615|gb|AAP91177.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894629|gb|AAP91190.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894643|gb|AAP91203.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894657|gb|AAP91216.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894671|gb|AAP91229.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894685|gb|AAP91242.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894699|gb|AAP91255.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894713|gb|AAP91268.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894727|gb|AAP91281.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894741|gb|AAP91294.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894755|gb|AAP91307.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894769|gb|AAP91320.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894783|gb|AAP91333.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894797|gb|AAP91346.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894811|gb|AAP91359.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894825|gb|AAP91372.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894839|gb|AAP91385.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894853|gb|AAP91398.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894867|gb|AAP91411.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894881|gb|AAP91424.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894895|gb|AAP91437.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894909|gb|AAP91450.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894923|gb|AAP91463.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894937|gb|AAP91476.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894951|gb|AAP91489.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894965|gb|AAP91502.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894979|gb|AAP91515.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|32894993|gb|AAP91528.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|33465907|gb|AAQ19339.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|33465921|gb|AAQ19352.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|33465935|gb|AAQ19365.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|33465949|gb|AAQ19378.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|33465963|gb|AAQ19391.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|33465977|gb|AAQ19404.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|33465991|gb|AAQ19417.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|33466005|gb|AAQ19430.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|33466019|gb|AAQ19443.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|37954131|gb|AAO53307.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40795172|gb|AAR91215.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40795200|gb|AAR91241.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40795228|gb|AAR91267.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40795242|gb|AAR91280.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40795270|gb|AAR91306.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40795284|gb|AAR91319.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40795298|gb|AAR91332.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40795312|gb|AAR91345.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40795326|gb|AAR91358.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40795340|gb|AAR91371.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40795354|gb|AAR91384.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846469|gb|AAR92505.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846483|gb|AAR92518.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846497|gb|AAR92531.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846511|gb|AAR92544.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846525|gb|AAR92557.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846539|gb|AAR92570.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846553|gb|AAR92583.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846567|gb|AAR92596.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846581|gb|AAR92609.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846595|gb|AAR92622.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846623|gb|AAR92648.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846637|gb|AAR92661.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846651|gb|AAR92674.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846665|gb|AAR92687.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846679|gb|AAR92700.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846693|gb|AAR92713.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846707|gb|AAR92726.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846721|gb|AAR92739.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846735|gb|AAR92752.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846749|gb|AAR92765.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846763|gb|AAR92778.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846777|gb|AAR92791.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846791|gb|AAR92804.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846805|gb|AAR92817.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846819|gb|AAR92830.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846833|gb|AAR92843.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846847|gb|AAR92856.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846861|gb|AAR92869.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846875|gb|AAR92882.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846889|gb|AAR92895.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846903|gb|AAR92908.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846917|gb|AAR92921.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846931|gb|AAR92934.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846945|gb|AAR92947.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846959|gb|AAR92960.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846973|gb|AAR92973.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40846987|gb|AAR92986.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847001|gb|AAR92999.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847015|gb|AAR93012.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847029|gb|AAR93025.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847043|gb|AAR93038.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847057|gb|AAR93051.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847071|gb|AAR93064.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847085|gb|AAR93077.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847099|gb|AAR93090.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847113|gb|AAR93103.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847127|gb|AAR93116.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847141|gb|AAR93129.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847155|gb|AAR93142.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847169|gb|AAR93155.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847183|gb|AAR93168.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847197|gb|AAR93181.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847211|gb|AAR93194.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847225|gb|AAR93207.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847239|gb|AAR93220.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847253|gb|AAR93233.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847281|gb|AAR93259.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847295|gb|AAR93272.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847309|gb|AAR93285.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847323|gb|AAR93298.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847337|gb|AAR93311.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847351|gb|AAR93324.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847365|gb|AAR93337.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847379|gb|AAR93350.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847393|gb|AAR93363.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847407|gb|AAR93376.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847421|gb|AAR93389.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847435|gb|AAR93402.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847449|gb|AAR93415.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847463|gb|AAR93428.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847477|gb|AAR93441.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847491|gb|AAR93454.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847505|gb|AAR93467.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847519|gb|AAR93480.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847547|gb|AAR93506.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847561|gb|AAR93519.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847575|gb|AAR93532.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847589|gb|AAR93545.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847603|gb|AAR93558.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847617|gb|AAR93571.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847631|gb|AAR93584.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847645|gb|AAR93597.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847659|gb|AAR93610.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847673|gb|AAR93623.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847687|gb|AAR93636.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847701|gb|AAR93649.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847715|gb|AAR93662.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847729|gb|AAR93675.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847743|gb|AAR93688.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847757|gb|AAR93701.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847771|gb|AAR93714.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847785|gb|AAR93727.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847799|gb|AAR93740.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847813|gb|AAR93753.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847827|gb|AAR93766.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847841|gb|AAR93779.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847855|gb|AAR93792.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847869|gb|AAR93805.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847883|gb|AAR93818.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847897|gb|AAR93831.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847911|gb|AAR93844.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847925|gb|AAR93857.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847939|gb|AAR93870.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847953|gb|AAR93883.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847981|gb|AAR93909.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40847995|gb|AAR93922.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848023|gb|AAR93948.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848037|gb|AAR93961.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848051|gb|AAR93974.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848065|gb|AAR93987.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848079|gb|AAR94000.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848093|gb|AAR94013.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848107|gb|AAR94026.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848121|gb|AAR94039.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848135|gb|AAR94052.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848149|gb|AAR94065.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848163|gb|AAR94078.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848177|gb|AAR94091.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848191|gb|AAR94104.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848205|gb|AAR94117.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848219|gb|AAR94130.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848233|gb|AAR94143.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848247|gb|AAR94156.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848261|gb|AAR94169.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848275|gb|AAR94182.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848289|gb|AAR94195.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848303|gb|AAR94208.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848317|gb|AAR94221.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848331|gb|AAR94234.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848345|gb|AAR94247.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848373|gb|AAR94273.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848387|gb|AAR94286.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848401|gb|AAR94299.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848415|gb|AAR94312.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848429|gb|AAR94325.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848443|gb|AAR94338.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848457|gb|AAR94351.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848471|gb|AAR94364.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848485|gb|AAR94377.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848499|gb|AAR94390.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848513|gb|AAR94403.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848527|gb|AAR94416.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848541|gb|AAR94429.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848555|gb|AAR94442.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848569|gb|AAR94455.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848583|gb|AAR94468.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848597|gb|AAR94481.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848611|gb|AAR94494.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848625|gb|AAR94507.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848639|gb|AAR94520.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848653|gb|AAR94533.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848667|gb|AAR94546.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848681|gb|AAR94559.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848695|gb|AAR94572.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848709|gb|AAR94585.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848723|gb|AAR94598.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848737|gb|AAR94611.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848751|gb|AAR94624.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848779|gb|AAR94650.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848793|gb|AAR94663.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848807|gb|AAR94676.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848835|gb|AAR94702.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848849|gb|AAR94715.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848863|gb|AAR94728.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848877|gb|AAR94741.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848891|gb|AAR94754.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848905|gb|AAR94767.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848919|gb|AAR94780.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848933|gb|AAR94793.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848947|gb|AAR94806.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848961|gb|AAR94819.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848975|gb|AAR94832.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40848989|gb|AAR94845.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849003|gb|AAR94858.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849017|gb|AAR94871.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849031|gb|AAR94884.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849045|gb|AAR94897.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849059|gb|AAR94910.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849073|gb|AAR94923.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849087|gb|AAR94936.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849101|gb|AAR94949.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849115|gb|AAR94962.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849129|gb|AAR94975.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849143|gb|AAR94988.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849157|gb|AAR95001.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849171|gb|AAR95014.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849185|gb|AAR95027.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849199|gb|AAR95040.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849213|gb|AAR95053.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849227|gb|AAR95066.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849241|gb|AAR95079.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849255|gb|AAR95092.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849269|gb|AAR95105.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849283|gb|AAR95118.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849297|gb|AAR95131.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849311|gb|AAR95144.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849325|gb|AAR95157.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849339|gb|AAR95170.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849353|gb|AAR95183.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849367|gb|AAR95196.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849381|gb|AAR95209.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849395|gb|AAR95222.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849409|gb|AAR95235.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849423|gb|AAR95248.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849437|gb|AAR95261.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849451|gb|AAR95274.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849465|gb|AAR95287.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849479|gb|AAR95300.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849493|gb|AAR95313.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849507|gb|AAR95326.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849521|gb|AAR95339.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849535|gb|AAR95352.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849549|gb|AAR95365.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849563|gb|AAR95378.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849577|gb|AAR95391.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849591|gb|AAR95404.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849605|gb|AAR95417.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849619|gb|AAR95430.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849647|gb|AAR95456.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849661|gb|AAR95469.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849675|gb|AAR95482.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849689|gb|AAR95495.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849703|gb|AAR95508.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849717|gb|AAR95521.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849731|gb|AAR95534.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849745|gb|AAR95547.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849759|gb|AAR95560.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849773|gb|AAR95573.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849787|gb|AAR95586.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849801|gb|AAR95599.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849815|gb|AAR95612.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|40849829|gb|AAR95625.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|47717692|gb|AAT37875.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|47717720|gb|AAT37901.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|48596139|gb|AAO88315.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|48596162|gb|AAO88484.2| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450304|gb|AAU02133.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450318|gb|AAU02146.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450332|gb|AAU02159.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450346|gb|AAU02172.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450360|gb|AAU02185.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450374|gb|AAU02198.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450388|gb|AAU02211.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450402|gb|AAU02224.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450416|gb|AAU02237.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450430|gb|AAU02250.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450444|gb|AAU02263.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450458|gb|AAU02276.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450472|gb|AAU02289.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450486|gb|AAU02302.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450514|gb|AAU02328.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450542|gb|AAU02354.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450556|gb|AAU02367.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450570|gb|AAU02380.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450584|gb|AAU02393.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450598|gb|AAU02406.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450612|gb|AAU02419.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450626|gb|AAU02432.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450640|gb|AAU02445.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450654|gb|AAU02458.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450668|gb|AAU02471.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450682|gb|AAU02484.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450696|gb|AAU02497.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450710|gb|AAU02510.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450724|gb|AAU02523.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450738|gb|AAU02536.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450752|gb|AAU02549.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450766|gb|AAU02562.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450780|gb|AAU02575.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450794|gb|AAU02588.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450808|gb|AAU02601.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450822|gb|AAU02614.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450836|gb|AAU02627.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450850|gb|AAU02640.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450864|gb|AAU02653.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450892|gb|AAU02679.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450906|gb|AAU02692.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450920|gb|AAU02705.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450934|gb|AAU02718.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450948|gb|AAU02731.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450962|gb|AAU02744.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450976|gb|AAU02757.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51450990|gb|AAU02770.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51451004|gb|AAU02783.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51451018|gb|AAU02796.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51451032|gb|AAU02809.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|51451046|gb|AAU02822.1| NADH dehydrogenase subunit 4 [Homo sapiens] gi|514510