RPSBLAST alignment for GI: 254780866 and conserved domain: TIGR01770
>gnl|CDD|162524 TIGR01770, NDH_I_N, proton-translocating NADH-quinone oxidoreductase, chain N. NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. Length = 468
Score = 106 bits (266), Expect = 2e-23
Identities = 90/396 (22%), Positives = 182/396 (45%), Gaps = 15/396 (3%)
Query: 87 LLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL--SLDMLLFYIFFEAS 144
L+++L+T L F LS +E ++ L+L +++ L S D+L Y+ E
Sbjct: 77 LILLLSTLLLFFFALSY--FSKEKINKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQ 134
Query: 145 LIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL--YAMS 201
+ +V+ + S A K+F+ F S +LF I ++ + + DL + +
Sbjct: 135 SLCFYVLAALKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSN 194
Query: 202 KFPFSIQYWMWIAFFCS-FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCI 260
+ I F K+ PFH W+P+ + APT + F + + +
Sbjct: 195 LGNDISLLLLGIVFILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVLL 254
Query: 261 RFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS 320
R + S + + ++++++ + ++ Q +K+L+AYSSI+H+GY+ IG+ +
Sbjct: 255 RLFGYILFAFSPIWQIFLLICAVLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLA 314
Query: 321 GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD--IFAYGGLVHNMPRYAVVMMV 378
G G++ +F + + L+S F + ++ R I + GL P A+++++
Sbjct: 315 GTLEGIKAVLFYIFIYALMSIGAFGVLALLRSRKDEWIEYISDFAGLFKTNPLIAILILI 374
Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV--FGVS 436
F + G+P +GF G+F V ++ ++ L + +L+++ S + Y +VV
Sbjct: 375 FMFSLAGIPPLAGFFGKFYVFFALLKSG---LYLLAVIAILTSVISAFYYLRVVKVMYFD 431
Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472
K E+ S + ++ A+ VF G++P I
Sbjct: 432 KPERRIFSNPQSKAQSLLLSISALFIVFLGLFPSLI 467