RPSBLAST alignment for GI: 254780866 and conserved domain: TIGR01770

>gnl|CDD|162524 TIGR01770, NDH_I_N, proton-translocating NADH-quinone oxidoreductase, chain N. NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. Length = 468
 Score =  106 bits (266), Expect = 2e-23
 Identities = 90/396 (22%), Positives = 182/396 (45%), Gaps = 15/396 (3%)

Query: 87  LLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL--SLDMLLFYIFFEAS 144
           L+++L+T L  F  LS     +E   ++    L+L +++    L  S D+L  Y+  E  
Sbjct: 77  LILLLSTLLLFFFALSY--FSKEKINKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQ 134

Query: 145 LIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL--YAMS 201
            +  +V+  +   S     A  K+F+   F S  +LF I ++     + +  DL  +  +
Sbjct: 135 SLCFYVLAALKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSN 194

Query: 202 KFPFSIQYWMWIAFFCS-FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCI 260
                    + I F       K+   PFH W+P+ +  APT  + F + +         +
Sbjct: 195 LGNDISLLLLGIVFILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVLL 254

Query: 261 RFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS 320
           R    +    S  +   +   ++++++  +  ++ Q  +K+L+AYSSI+H+GY+ IG+ +
Sbjct: 255 RLFGYILFAFSPIWQIFLLICAVLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLA 314

Query: 321 GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD--IFAYGGLVHNMPRYAVVMMV 378
           G   G++  +F +  + L+S   F  + ++  R       I  + GL    P  A+++++
Sbjct: 315 GTLEGIKAVLFYIFIYALMSIGAFGVLALLRSRKDEWIEYISDFAGLFKTNPLIAILILI 374

Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV--FGVS 436
           F  +  G+P  +GF G+F V  ++ ++      L +   +L+++ S + Y +VV      
Sbjct: 375 FMFSLAGIPPLAGFFGKFYVFFALLKSG---LYLLAVIAILTSVISAFYYLRVVKVMYFD 431

Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472
           K E+       S  +  ++   A+  VF G++P  I
Sbjct: 432 KPERRIFSNPQSKAQSLLLSISALFIVFLGLFPSLI 467