RPSBLAST alignment for GI: 254780866 and conserved domain: TIGR01972

>gnl|CDD|162632 TIGR01972, NDH_I_M, proton-translocating NADH-quinone oxidoreductase, chain M. This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. Length = 479

 Score =  534 bits (1377), Expect = e-152
 Identities = 248/472 (52%), Positives = 339/472 (71%), Gaps = 5/472 (1%)

Query: 6   LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65
           LS++ FLP +G  +IL       G+  +  +AL ++    + SL +   FD   S FQ  
Sbjct: 1   LSLLIFLPLIGALLILLLP-SKKGKARW--IALVVALATLLLSLLLLFQFDPTGSGFQFT 57

Query: 66  EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124
           E   WI     SYHLGVDGIS+ LV+LT  LT   IL+SW+SIQ+  +E+   FL+LE+ 
Sbjct: 58  ESIPWIPALGISYHLGVDGISLPLVLLTALLTLLSILASWESIQKRVKEFYALFLLLEAG 117

Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184
           VIG F +LD+LLFY+F+EA LIPM+++IGVWGG  RIYAA KFFLYT  GS+ ML AI+ 
Sbjct: 118 VIGVFAALDLLLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILG 177

Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244
           + +   T  +++L  +   PFS+Q W+++AFF +FA+K+P+FP HTWLP+AHV+APTAGS
Sbjct: 178 LYFLGGTFDLLELINLP-LPFSVQTWLFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGS 236

Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304
           V LAG++LKMG YG +RF LPLFP AS YFAPV+  L++IAIIY +L+++ QTDIK+LIA
Sbjct: 237 VILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAALAVIAIIYGALIALAQTDIKRLIA 296

Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364
           YSSI+HMG+V +GIFS  + G+ GA+FQM+SHGL+++ALF  VGV+YDR HTRDI  YGG
Sbjct: 297 YSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYDRAHTRDIAKYGG 356

Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424
           L + MP  A   M+F MA++GLPGTSGF+GEFL+++  F+ +  VA LA+ G+VL+A Y 
Sbjct: 357 LANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGAFKVNPVVAFLAALGIVLTAAYM 416

Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476
           LWLY++V FG     +V +  DL+ RE  ++ P+ VL +F G+YP P+ D  
Sbjct: 417 LWLYKRVFFGELSNPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLDLT 468