BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M
[Candidatus Liberibacter asiaticus str. psy62]
(499 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus
str. psy62]
Length = 499
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/499 (100%), Positives = 499/499 (100%)
Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60
MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS
Sbjct: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60
Query: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120
SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV
Sbjct: 61 SFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV 120
Query: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180
LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF
Sbjct: 121 LESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLF 180
Query: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240
AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP
Sbjct: 181 AIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAP 240
Query: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300
TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK
Sbjct: 241 TAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIK 300
Query: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360
KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF
Sbjct: 301 KLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIF 360
Query: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420
AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS
Sbjct: 361 AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420
Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480
ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL
Sbjct: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVPL 480
Query: 481 SSIIENYTLKTGYSDSVKG 499
SSIIENYTLKTGYSDSVKG
Sbjct: 481 SSIIENYTLKTGYSDSVKG 499
>gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 75.5 bits (184), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 10/300 (3%)
Query: 133 DMLLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT 191
DM+ FY+ E ++V+I + S I AA K+F+ F S F+L+ I +
Sbjct: 127 DMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGC 186
Query: 192 SSIIDLYAMSKFPFSIQYWMWIA---FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248
+ + A S F + + + K+ + PFH W+P+ + +P + FLA
Sbjct: 187 TGFSQI-ATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLA 245
Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308
I R +P+ S P+ +S+ +++ S+V++ Q D+K+L+AYSSI
Sbjct: 246 TIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304
Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY--DRLHTRDIFAYGGLV 366
H GY IG +GM G+ + M+ + ++ F C+ + D + ++I GL
Sbjct: 305 GHAGYALIGFSTGML-GIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLS 363
Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGE-FLVIMSVFQNSNTVAVLASFGVVLSALYSL 425
+ +F + G+P +GF G+ FL+I +V + +A++A V+SA Y L
Sbjct: 364 RQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYL 423
>gi|254780865|ref|YP_003065278.1| NADH dehydrogenase subunit L [Candidatus Liberibacter asiaticus
str. psy62]
Length = 666
Score = 74.7 bits (182), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 126/249 (50%), Gaps = 16/249 (6%)
Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288
H WLP+A ++ PT S + + G + + PLF L S + I L I +
Sbjct: 260 HVWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMSPLFEL-SPFVLDCITVLGCITAFF 317
Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVG 348
A+ V +VQ DIK++IAYS+ + +GY+ + + G ++ ++F + +H + LF G
Sbjct: 318 AATVGLVQHDIKRVIAYSTCSQLGYMFVAL--GCRA-YGASIFHLFTHAFFKALLFLGSG 374
Query: 349 -VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMA--NMGLPGTS-GFIGEFL--VIMSV 402
VI+ +D+ GGL ++PR +M+V T+A G+P TS GF G F +I+ V
Sbjct: 375 SVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEV 434
Query: 403 FQNSNTVAVLASFGVVLSALYSLWLYRKV---VFGVSKCEK--VQQLKDLSLRERCMVYP 457
S+ + + + L S + +R + FG + +K ++ + L + ++
Sbjct: 435 AYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFI 494
Query: 458 IAVLTVFFG 466
+A+ ++FFG
Sbjct: 495 LAIGSIFFG 503
>gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 221
Score = 26.6 bits (57), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121
D + + GVD ++ LL V +LT + + W+SI+E E ++ L +
Sbjct: 128 DLAGNDNDGVDRVA-LLEVFRNYLTVNNLDADWESIEEASNEILVNSLAM 176
>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 416
Score = 25.0 bits (53), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 178 MLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFP 227
+L IV++ W+ K SI+ + P I+Y++ F C+F K P
Sbjct: 263 LLRFIVLISWQDK-KSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIP 311
>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
str. psy62]
Length = 236
Score = 24.6 bits (52), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 96 TPFCILSSWKSIQENFR 112
TP CILS SI++ R
Sbjct: 73 TPVCILSGMSSIEDKVR 89
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.333 0.145 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 317,211
Number of Sequences: 1233
Number of extensions: 13476
Number of successful extensions: 67
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 17
length of query: 499
length of database: 328,796
effective HSP length: 78
effective length of query: 421
effective length of database: 232,622
effective search space: 97933862
effective search space used: 97933862
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 40 (20.0 bits)