HHsearch alignment for GI: 254780867 and conserved domain: CHL00025
>CHL00025 ndhF NADH dehydrogenase subunit 5.
Probab=100.00 E-value=0 Score=569.03 Aligned_cols=365 Identities=22% Similarity=0.329 Sum_probs=322.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 03167641007999999999999999999999963210022420667999999999987314610221245777887777
Q gi|254780867|r 65 GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYV 144 (478)
Q Consensus 65 ~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~ 144 (478)
T Consensus 82 ~~~~~~~~D~ls~~m~~~vt~v~~lv~iYS~~Ym~~d~~-~~rff~~l~lf~~~ml~lv~s~nl~~~fv~wE~~gl~Syl 160 (738)
T CHL00025 82 SLEFGYLIDPLTSIMLILITTVGILVLIYSDNYMSHDQG-YLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYL 160 (738)
T ss_pred EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 168888973688999999999999999995897179998-0579999999999999999947499999999999999878
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC-----CCCCCCCCCCCCCCCCCCCC
Q ss_conf 6653200013445555540146204679988988530010000012222111013-----43100001222211234444
Q gi|254780867|r 145 LIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIG-----HRSFVLIVGVVLILVGLFFK 219 (478)
Q Consensus 145 LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~-----~~~~~~~~~~~ll~~g~~~K 219 (478)
T Consensus 161 LIgf~~~~~~a~~aa~kafi~~riGd~~~l~gi~~l~~~~gt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K 240 (738)
T CHL00025 161 LIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSFEFRDLFEIFNNLIYNNEVNLLFATLCAFLLFLGPVAK 240 (738)
T ss_pred HHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 41132388578899999999997999999999999999985877999999998765426766799999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCC-EECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4321100012101221001233332100-000232111112440001122210000012221022220000012445443
Q gi|254780867|r 220 MALVPFHMWIPDVYEGSPMFMTAFLATI-PKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRL 298 (478)
Q Consensus 220 ~~~fPfH~Wlp~a~~~ap~~~salls~~-~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~Krl 298 (478)
T Consensus 241 sAq~Plh~WLPdAm~-~PTPvSAlihaatmV~aGvyl~~R~~~~~~-~~p~~~~~v~~ig~~T~~~~a~~a~~q~DiKr~ 318 (738)
T CHL00025 241 SAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFI-VIPYIMNLISLIGIITALLGATLALAQKDIKRG 318 (738)
T ss_pred HCCCCCCCCCCHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 430755002503205-997088999887898844765634726765-068999999999999999999999868878888
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCC-------CCCCCCHHHCCCCCCCCHHHH
Q ss_conf 5642111244211111121577888864300232010011000026787408-------764550210466523211478
Q gi|254780867|r 299 MAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDG-------NNIQNISDLAGLSRQDIFLTC 371 (478)
Q Consensus 299 lAySsi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~-------~~~~~i~~l~gl~~~~P~~~~ 371 (478)
T Consensus 319 LAyST~sQlGym~~~~g~g~--~~aa~~Hl~~Ha~fKalLFl~aGsvih~~~~~~~~~~~~~qd~~~mgGl~k~mP~t~~ 396 (738)
T CHL00025 319 LAYSTMSQLGYMMLALGMGS--YRAALFHLITHAYSKALLFLGSGSVIHSMEPIVGYSPDKSQNMVLMGGLRKYMPITKT 396 (738)
T ss_pred HHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHH
T ss_conf 88758988899999646995--8999999999999999999888899997102124576777048886494558669999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999865303665000067599999999962849999999999999999999999999649987
Q gi|254780867|r 372 ALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQST 435 (478)
Q Consensus 372 ~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~ 435 (478)
T Consensus 397 ~f~ig~lal~GiPp~~GF~SKd~Il~~a~~~~-~~l~~~~~~tA~lTAFYm~Rl~fltF~G~~R 459 (738)
T CHL00025 397 TFLLGTLSLCGIPPLACFWSKDEILNDSWLYS-PIFAIIAWSTAGLTAFYMFRIYLLTFEGHLR 459 (738)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
T ss_conf 99998899826864125876999999998746-2999999999999999999999822478665