HHsearch alignment for GI: 254780867 and conserved domain: MTH00044

>MTH00044 ND4 NADH dehydrogenase subunit 4; Validated.
Probab=100.00  E-value=0  Score=527.86  Aligned_cols=401  Identities=19%  Similarity=0.268  Sum_probs=346.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             10031676410079999999999999999999999632100-22420667999999999987314610221245777887
Q gi|254780867|r   63 GIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPF-SCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFA  141 (478)
Q Consensus        63 ~~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~-~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~  141 (478)
T Consensus        50 ~~~~~~~~~~D~lS~~lilLt~~l~~l~~laS~~~l~~~~~~~~~~f~~lll~l~~~l~~~F~s~dl~~fyiffE~~lIp  129 (460)
T MTH00044         50 WHNLSLSLATDSISTPLIILSCWLIPISLLASINHLSNYSLLNQRTFISLIIIILTALIITFSSLELSLFYIAFETTLIP  129 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             54565999576768999999999999999997999862864218899999999999999999983899999999999999


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77766532000134455555401462046799889885300100000122221110-13431000012222112344444
Q gi|254780867|r  142 LYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLF-IGHRSFVLIVGVVLILVGLFFKM  220 (478)
Q Consensus       142 ~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~-~~~~~~~~~~~~~ll~~g~~~K~  220 (478)
T Consensus       130 ~~~LI~~wG~~~~r~~A~~~~~~yt~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~l~~~laF~vK~  209 (460)
T MTH00044        130 TLILISRWGAQKERYQASLYFLFYTLFGSLPLLISLIAIYVSSSSLSIPSVNLNWNFTSSPTSLTSIWWLFCFLAFLVKM  209 (460)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999883998799999999999999989999999999999848751999999988753416699999999999999973


Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             321100012101221001233332100000232111112440001-1222100000122210222200000124454435
Q gi|254780867|r  221 ALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWP-MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLM  299 (478)
Q Consensus       221 ~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~-~~~~~~~~l~~~g~~t~i~g~~~al~q~d~Krll  299 (478)
T Consensus       210 pl~P~H~WLP~Ah~eAP~~~SmlLAgvllKlG~YgliR~~~~~~~~~~~~~~~~l~~l~~~g~~~~s~~al~Q~DlKrli  289 (460)
T MTH00044        210 PIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLISLFSTPSLNNLSFPLITFCIWGALITSIICLRQTDLKALI  289 (460)
T ss_pred             HHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             68760123726435398069999999999999999999999863056899999999999999999999999864752999


Q ss_pred             CCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             6421112442111111215-778888643002320100110000267874087645502104665232114789999865
Q gi|254780867|r  300 AYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLF  378 (478)
Q Consensus       300 AySsi~q~G~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~l  378 (478)
T Consensus       290 AYSSVsHmG~v~~gi~~~~~~g~~Gal~~miaHgl~ss~LF~lag~~y~rt~--tr~i~~~~Gl~~~~P~~~~~~~i~~l  367 (460)
T MTH00044        290 AYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANTLYERSG--TRTLAITRGLKLITPLLTLWWLITCA  367 (460)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             9933998999999999705889999999999999999999999889997038--67378738816563799999999999


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHH
Q ss_conf             303665000067599999999962849999999999999999999999999649987786---55673321899999999
Q gi|254780867|r  379 SLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECV---VVVAKEMRLFIFGSILF  455 (478)
Q Consensus       379 sl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~~~~~~  455 (478)
T Consensus       368 a~~glPp~~gF~gE~~i~~s~~~~~-~~~~~~~~~~~~lta~Y~L~~~~~~~~G~~~~~~~~~~~~~~rE~~~l~~h~~p  446 (460)
T MTH00044        368 ANLGLPPLPNLIGELLIISSIIDWN-ILSFPIIGLATVFGAIYSLLIYQLTNSGTFPSFISNISPITSREHLLIFLHLLP  446 (460)
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             9751643460999999999999998-999999999999999999999999867998101433899857899999999999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999997676
Q gi|254780867|r  456 VTGYFLIENIL  466 (478)
Q Consensus       456 ~~~~~~~~~~~  466 (478)
T Consensus       447 ~~~l~~~P~~i  457 (460)
T MTH00044        447 LILIIINPSLI  457 (460)
T ss_pred             HHHHHHCHHHH
T ss_conf             99999786888