HHsearch alignment for GI: 254780867 and conserved domain: MTH00044
>MTH00044 ND4 NADH dehydrogenase subunit 4; Validated.
Probab=100.00 E-value=0 Score=527.86 Aligned_cols=401 Identities=19% Similarity=0.268 Sum_probs=346.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 10031676410079999999999999999999999632100-22420667999999999987314610221245777887
Q gi|254780867|r 63 GIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPF-SCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFA 141 (478)
Q Consensus 63 ~~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~-~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~ 141 (478)
T Consensus 50 ~~~~~~~~~~D~lS~~lilLt~~l~~l~~laS~~~l~~~~~~~~~~f~~lll~l~~~l~~~F~s~dl~~fyiffE~~lIp 129 (460)
T MTH00044 50 WHNLSLSLATDSISTPLIILSCWLIPISLLASINHLSNYSLLNQRTFISLIIIILTALIITFSSLELSLFYIAFETTLIP 129 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54565999576768999999999999999997999862864218899999999999999999983899999999999999
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77766532000134455555401462046799889885300100000122221110-13431000012222112344444
Q gi|254780867|r 142 LYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLF-IGHRSFVLIVGVVLILVGLFFKM 220 (478)
Q Consensus 142 ~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~-~~~~~~~~~~~~~ll~~g~~~K~ 220 (478)
T Consensus 130 ~~~LI~~wG~~~~r~~A~~~~~~yt~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~l~~~laF~vK~ 209 (460)
T MTH00044 130 TLILISRWGAQKERYQASLYFLFYTLFGSLPLLISLIAIYVSSSSLSIPSVNLNWNFTSSPTSLTSIWWLFCFLAFLVKM 209 (460)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999883998799999999999999989999999999999848751999999988753416699999999999999973
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 321100012101221001233332100000232111112440001-1222100000122210222200000124454435
Q gi|254780867|r 221 ALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWP-MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLM 299 (478)
Q Consensus 221 ~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~-~~~~~~~~l~~~g~~t~i~g~~~al~q~d~Krll 299 (478)
T Consensus 210 pl~P~H~WLP~Ah~eAP~~~SmlLAgvllKlG~YgliR~~~~~~~~~~~~~~~~l~~l~~~g~~~~s~~al~Q~DlKrli 289 (460)
T MTH00044 210 PIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLISLFSTPSLNNLSFPLITFCIWGALITSIICLRQTDLKALI 289 (460)
T ss_pred HHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 68760123726435398069999999999999999999999863056899999999999999999999999864752999
Q ss_pred CCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 6421112442111111215-778888643002320100110000267874087645502104665232114789999865
Q gi|254780867|r 300 AYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLF 378 (478)
Q Consensus 300 AySsi~q~G~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~l 378 (478)
T Consensus 290 AYSSVsHmG~v~~gi~~~~~~g~~Gal~~miaHgl~ss~LF~lag~~y~rt~--tr~i~~~~Gl~~~~P~~~~~~~i~~l 367 (460)
T MTH00044 290 AYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANTLYERSG--TRTLAITRGLKLITPLLTLWWLITCA 367 (460)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9933998999999999705889999999999999999999999889997038--67378738816563799999999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHH
Q ss_conf 303665000067599999999962849999999999999999999999999649987786---55673321899999999
Q gi|254780867|r 379 SLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECV---VVVAKEMRLFIFGSILF 455 (478)
Q Consensus 379 sl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~~~~~~ 455 (478)
T Consensus 368 a~~glPp~~gF~gE~~i~~s~~~~~-~~~~~~~~~~~~lta~Y~L~~~~~~~~G~~~~~~~~~~~~~~rE~~~l~~h~~p 446 (460)
T MTH00044 368 ANLGLPPLPNLIGELLIISSIIDWN-ILSFPIIGLATVFGAIYSLLIYQLTNSGTFPSFISNISPITSREHLLIFLHLLP 446 (460)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9751643460999999999999998-999999999999999999999999867998101433899857899999999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999997676
Q gi|254780867|r 456 VTGYFLIENIL 466 (478)
Q Consensus 456 ~~~~~~~~~~~ 466 (478)
T Consensus 447 ~~~l~~~P~~i 457 (460)
T MTH00044 447 LILIIINPSLI 457 (460)
T ss_pred HHHHHHCHHHH
T ss_conf 99999786888