HHsearch alignment for GI: 254780867 and conserved domain: MTH00059
>MTH00059 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=98.22 E-value=1.1e-06 Score=53.54 Aligned_cols=257 Identities=16% Similarity=0.291 Sum_probs=149.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 9987314610221245777887777665320001344---5555540146204679988988530010000012222111
Q gi|254780867|r 120 LCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSI---EAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSL 196 (478)
Q Consensus 120 ~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~---~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~ 196 (478)
T Consensus 19 ~~~~~sdsll~FWvfLEL~~LslIP~ff-~~~~~~~~~~~~sll~Yiv~sglSS~Liv~Gll~~----------~l---- 83 (288)
T MTH00059 19 LLCLLSDSLLGFWVFLELCGLSLIPCFF-LSGNSNVLNFYSSLLSYIVMSGISSSLIVSGLLFS----------SL---- 83 (288)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH----------HH----
T ss_conf 9999845599999999997787878997-04886510023588899998601189999999987----------48----
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 01343100001222211234444432110001210122100123333210000023211111244000112221000001
Q gi|254780867|r 197 FIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMC 276 (478)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~ 276 (478)
T Consensus 84 ------------~~f~ffGl~~KFGlFPF~~WvY~Vf~~~sW~vi~~iSvv~K~-piLf~~f~~~---~-~--~~~lv~~ 144 (288)
T MTH00059 84 ------------YFFFFFGFCVKFGLFPFMFWVYRVFSNSSWVVIWLISVVMKF-PVLFFSFFLQ---G-G--GLELVFV 144 (288)
T ss_pred ------------HHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEEHHHHHH-HHHHHHHHHH---C-C--CCEEEHH
T ss_conf ------------999999999997011256555653027876888772588876-8988667630---5-8--7234428
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 222102222000001-2445443564211124421111-11215778888643002320100110000267874087645
Q gi|254780867|r 277 VSIGSMVLGSVVAIR-QKDLKRLMAYSSIGHAGYALIG-FSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQ 354 (478)
Q Consensus 277 ~g~~t~i~g~~~al~-q~d~KrllAySsi~q~G~i~~~-l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~ 354 (478)
T Consensus 145 ~c~ltil~c~~l~W~~S~~W~~~WcH~~lSSs~~lvv~~~~~s~~~~~~i~~~Y~~Wss~~I~yls~~~----------- 213 (288)
T MTH00059 145 DCFLTILFCGFLFWFYSLSWEYVWCHISLSSSATLVVACFCLSFDLCFFIYLYYFVWSSGVIIYFSSLS----------- 213 (288)
T ss_pred HHHHHHHHHHHHHHEEECCHHHEEEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEEEEEEC-----------
T ss_conf 888999988676640307823466677714677999998851667889999999999874065688963-----------
Q ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 50210466523211478999986530366500006759999999996284999999999999999999999999964
Q gi|254780867|r 355 NISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWF 431 (478)
Q Consensus 355 ~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~ 431 (478)
T Consensus 214 ~~~~~----~~~~~~~f~~l-----Ll~~P~S~~l~YKl~v~~~I~~~s~~vll~-W~iYsfsEQ~~L~k~~~~~~~ 280 (288)
T MTH00059 214 DSNDL----KGYGFFGYCFL-----LLSTPVSFPLFYKLSVCYGIIYSSLYVLLV-WVIYSFSEQFFLFKLLVSYFV 280 (288)
T ss_pred CCCCC----CCCEEEEEHHH-----HHHCCCEEHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCEE
T ss_conf 55456----67443100243-----542454101056787778767735899999-999999999999999871402