HHsearch alignment for GI: 254780867 and conserved domain: MTH00063
>MTH00063 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00 E-value=0 Score=420.91 Aligned_cols=347 Identities=18% Similarity=0.195 Sum_probs=292.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 03167641007999999999999999999999963210022420667999999999987314610221245777887777
Q gi|254780867|r 65 GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYV 144 (478)
Q Consensus 65 ~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~ 144 (478)
T Consensus 33 ~~~~~f~fD~~Sl~f~~~V~~Is~~V~~YS~~YM~~d~~-~~rF~~ll~lFv~sM~~LV~S~nll~l~lgWEglGl~Syl 111 (519)
T MTH00063 33 YWLINFDFDYVTFGVLLMLLICFYYALYYTFHYFGGSYA-SFLLNKIIVLFVLVMGILVLTGDFLSTLIFWEYLGVVSFF 111 (519)
T ss_pred EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 489998639639999999999999999998887589998-4289999999999999999983599999999999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66532000134455555401462046799889885300100000122221110134310000122221123444443211
Q gi|254780867|r 145 LIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP 224 (478)
Q Consensus 145 LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fP 224 (478)
T Consensus 112 LI~fy~~-~~s~~aa~~t~l~nRiGDv~l~~~i~~~~~~~~~~~~------------------~~l~~~l~a~tKSAQ~P 172 (519)
T MTH00063 112 LILFYDN-FLSLRASVVTLVSSRFGDVCLFLLIGLSCWGGSSSFL------------------CGLFFFLVVFTKSASFP 172 (519)
T ss_pred HHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHCCCC
T ss_conf 9837578-9999999999999999999999999999986238999------------------99999999998724074
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCE-ECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 000121012210012333321000-0023211111244000112221000001222102222000001244544356421
Q gi|254780867|r 225 FHMWIPDVYEGSPMFMTAFLATIP-KFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSS 303 (478)
Q Consensus 225 fH~Wlp~a~~~ap~~~salls~~~-~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySs 303 (478)
T Consensus 173 F~~WLp~AM~-aPTPVSALvHSsTlVtAGVyLliR~~~~~~-~-~~~~~~l~~ig~lT~~~a~~~Al~q~DlKKiIA~ST 249 (519)
T MTH00063 173 FISWLLEAMR-APTPVSSLVHSSTLVAAGVWFVMRYDYLLG-F-SWLVYFFSVCLLLTIFITGVSSLFFNDLKKIVALST 249 (519)
T ss_pred CHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4565678737-999188999889999999999999889860-6-799999999999999999999997863889999888
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 11244211111121577888864300232010011000026787408764550210466523211478999986530366
Q gi|254780867|r 304 IGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGI 383 (478)
Q Consensus 304 i~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~Gl 383 (478)
T Consensus 250 lSQLG~M~~~lglG~~--~lA~fHL~~HA~FKAlLFl~aG~vIh~~~-~~QDir~mg~~~~~~p~~~~~~~i~~lsL~G~ 326 (519)
T MTH00063 250 CNNISWCVLYLIYGDV--ILSLFQLVSHGVSKCLLFMLVGDVMSGSG-GSQASNCVYSSILYGSWNLFYLFLLVLGLSGV 326 (519)
T ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 8799999999982759--99999999999999999985579997389-95156775386531259999999999998442
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 500006759999999996284999999999999999999999999964998778
Q gi|254780867|r 384 PPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTEC 437 (478)
Q Consensus 384 Pp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~ 437 (478)
T Consensus 327 PFlsGFySKDlILe~~~~~~n~~~~~l~~~~~~lT~~YS~RL~~~~~~~~~~~s 380 (519)
T MTH00063 327 PFIGVFFSKHFLLSSFSSVFNVVVLLLVILCVFLSYLYSFRLCLILFGVKSSLS 380 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 164067755999999998479999999999999999999999999984777741