HHsearch alignment for GI: 254780867 and conserved domain: MTH00094
>MTH00094 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=406.90 Aligned_cols=354 Identities=17% Similarity=0.221 Sum_probs=289.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 31676410079999999999999999999999632100224206679999999999873146102212457778877776
Q gi|254780867|r 66 LGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVL 145 (478)
Q Consensus 66 ~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~L 145 (478)
T Consensus 36 ~~~~f~~d~~s~~l~il~~~~~~~---~~~~--s~~~---~~~~~~~~~l~~~li~~F~s~nl~lFYiffE~sLIP~~~L 107 (409)
T MTH00094 36 SGLFFFFDSFSFLLLIFMSLFILG---LVLM--SEKN---YNLLILSNLLVFICVFFFVSSNLWMLYLFFELSMFPILIM 107 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 448999878999999999999999---9999--8330---4999999999999999999989999999999999999999
Q ss_pred HHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65320001344555554014620467998898853001000001222211101343100001222211234444432110
Q gi|254780867|r 146 IAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPF 225 (478)
Q Consensus 146 I~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPf 225 (478)
T Consensus 108 I~~wG~q~eR~~A~~y~l~YTl~~SlplL~~i~~~~~~~~~~~~~~~~~-----------~~~~~~l~laFlvK~Plfp~ 176 (409)
T MTH00094 108 ILGYGSQIEKINSSYYLIFYAAFFSFPFLFVYFKNFFFLNFVYFDFFLS-----------WEMKFILSLMFMVKFPVYFL 176 (409)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-----------HHHHHHHHHHHHHHHHHCCC
T ss_conf 9960982999999999999999999999999999999974231678999-----------99999999999999636313
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00121012210012333321000002321111124400011222100000122210222200000124454435642111
Q gi|254780867|r 226 HMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIG 305 (478)
Q Consensus 226 H~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~ 305 (478)
T Consensus 177 H~WLP~AHvEAP~~gSmiLAGvLlKlG~YGl~R~~~~~~~---~~~~~~~~l~l~g~v~~sl~~l~Q~DlK~liAYSSVs 253 (409)
T MTH00094 177 HLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLSF---VHNNYWILLSLLGMILSSFCCVFQSDSKSLAAYSSVT 253 (409)
T ss_pred CCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 1237365510883899999999998989999999998879---8999999999999999999999877488999981398
Q ss_pred CCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 244211111121-5778888643002320100110000267874087645502104665232114789999865303665
Q gi|254780867|r 306 HAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIP 384 (478)
Q Consensus 306 q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlP 384 (478)
T Consensus 254 HMg~v~~gl~~~~~~g~~Gal~~mi~HGl~ss~LF~l~g~~y~r~~--sR~i~~~~Gl~~~~P~~~~~~~l~~l~n~g~P 331 (409)
T MTH00094 254 HMSFLLLSLVFMSMSGKLSGLLLMLAHGYTSTLMFYFIGEFYHISK--SRLIYFMNSFFNSSMIFSILFSLVFLSNSGIP 331 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999960899999899999887777799998858998236--55599869978786999999999999985589
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 000067599999999962849999999999999999999999999649987786556733
Q gi|254780867|r 385 PFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKE 444 (478)
Q Consensus 385 p~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~~ 444 (478)
T Consensus 332 p~~~F~sE~lii~s~~~~~-~~~~~~~~~~~~lsa~Ysl~ly~~~~~Gk~~s~~~~~~~~ 390 (409)
T MTH00094 332 PSLSFFSEFLSISNFFSMN-KFSFFFIFFYFIVSFYYSLFLITSSLMGKKFSNFNKWNFG 390 (409)
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 7450999999999999998-9999999999999999999999996668773311047600