HHsearch alignment for GI: 254780867 and conserved domain: MTH00094

>MTH00094 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=406.90  Aligned_cols=354  Identities=17%  Similarity=0.221  Sum_probs=289.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             31676410079999999999999999999999632100224206679999999999873146102212457778877776
Q gi|254780867|r   66 LGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVL  145 (478)
Q Consensus        66 ~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~L  145 (478)
T Consensus        36 ~~~~f~~d~~s~~l~il~~~~~~~---~~~~--s~~~---~~~~~~~~~l~~~li~~F~s~nl~lFYiffE~sLIP~~~L  107 (409)
T MTH00094         36 SGLFFFFDSFSFLLLIFMSLFILG---LVLM--SEKN---YNLLILSNLLVFICVFFFVSSNLWMLYLFFELSMFPILIM  107 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             448999878999999999999999---9999--8330---4999999999999999999989999999999999999999


Q ss_pred             HHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65320001344555554014620467998898853001000001222211101343100001222211234444432110
Q gi|254780867|r  146 IAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPF  225 (478)
Q Consensus       146 I~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPf  225 (478)
T Consensus       108 I~~wG~q~eR~~A~~y~l~YTl~~SlplL~~i~~~~~~~~~~~~~~~~~-----------~~~~~~l~laFlvK~Plfp~  176 (409)
T MTH00094        108 ILGYGSQIEKINSSYYLIFYAAFFSFPFLFVYFKNFFFLNFVYFDFFLS-----------WEMKFILSLMFMVKFPVYFL  176 (409)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-----------HHHHHHHHHHHHHHHHHCCC
T ss_conf             9960982999999999999999999999999999999974231678999-----------99999999999999636313


Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00121012210012333321000002321111124400011222100000122210222200000124454435642111
Q gi|254780867|r  226 HMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIG  305 (478)
Q Consensus       226 H~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~  305 (478)
T Consensus       177 H~WLP~AHvEAP~~gSmiLAGvLlKlG~YGl~R~~~~~~~---~~~~~~~~l~l~g~v~~sl~~l~Q~DlK~liAYSSVs  253 (409)
T MTH00094        177 HLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLSF---VHNNYWILLSLLGMILSSFCCVFQSDSKSLAAYSSVT  253 (409)
T ss_pred             CCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             1237365510883899999999998989999999998879---8999999999999999999999877488999981398


Q ss_pred             CCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             244211111121-5778888643002320100110000267874087645502104665232114789999865303665
Q gi|254780867|r  306 HAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIP  384 (478)
Q Consensus       306 q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlP  384 (478)
T Consensus       254 HMg~v~~gl~~~~~~g~~Gal~~mi~HGl~ss~LF~l~g~~y~r~~--sR~i~~~~Gl~~~~P~~~~~~~l~~l~n~g~P  331 (409)
T MTH00094        254 HMSFLLLSLVFMSMSGKLSGLLLMLAHGYTSTLMFYFIGEFYHISK--SRLIYFMNSFFNSSMIFSILFSLVFLSNSGIP  331 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999960899999899999887777799998858998236--55599869978786999999999999985589


Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             000067599999999962849999999999999999999999999649987786556733
Q gi|254780867|r  385 PFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKE  444 (478)
Q Consensus       385 p~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~~  444 (478)
T Consensus       332 p~~~F~sE~lii~s~~~~~-~~~~~~~~~~~~lsa~Ysl~ly~~~~~Gk~~s~~~~~~~~  390 (409)
T MTH00094        332 PSLSFFSEFLSISNFFSMN-KFSFFFIFFYFIVSFYYSLFLITSSLMGKKFSNFNKWNFG  390 (409)
T ss_pred             CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf             7450999999999999998-9999999999999999999999996668773311047600