HHsearch alignment for GI: 254780867 and conserved domain: MTH00108
>MTH00108 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00 E-value=0 Score=499.29 Aligned_cols=380 Identities=19% Similarity=0.250 Sum_probs=320.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 03167641007999999999999999999999963210022420667999999999987314610221245777887777
Q gi|254780867|r 65 GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYV 144 (478)
Q Consensus 65 ~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~ 144 (478)
T Consensus 75 ~~~~sf~~D~~S~~f~~~vl~Is~~V~~yS~~YM~~d~~-~~rF~~~l~lF~~sMl~LV~s~Nl~~lfiGWEgvGl~Syl 153 (602)
T MTH00108 75 KLSLSFKLDYFSMIFIPVALFVTWSIMEFSMWYMHSDPN-INRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFL 153 (602)
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 528887437438999999999999999997998079989-3659999999999999999972199999999999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66532000134455555401462046799889885300100000122221110134310000122221123444443211
Q gi|254780867|r 145 LIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP 224 (478)
Q Consensus 145 LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fP 224 (478)
T Consensus 154 LI~~w~~r~~a~~aa~~a~l~nRiGD~~lll~i~~l~~~~~s~~~~~i~~~~~~--~---~~~~l~~lllaa~~KSAQfP 228 (602)
T MTH00108 154 LIGWWYGRTDANTAALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIFMLNPN--N---LNLPLMGLLLAATGKSAQFG 228 (602)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC--H---HHHHHHHHHHHHHHHHHHCC
T ss_conf 999963986789999999999915689999999999998166229999973552--3---79999999999998652074
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCC-EECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00012101221001233332100-00023211111244000112221000001222102222000001244544356421
Q gi|254780867|r 225 FHMWIPDVYEGSPMFMTAFLATI-PKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSS 303 (478)
Q Consensus 225 fH~Wlp~a~~~ap~~~salls~~-~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySs 303 (478)
T Consensus 229 fh~WLP~AMe-gPTPVSALlHSsTmV~AGVyLliR~~pl~~-~~~~~~~~~l~lG~~T~l~aa~~Al~q~DiKkiiAyST 306 (602)
T MTH00108 229 LHPWLPSAME-GPTPVSALLHSSTMVVAGVFLLIRFHPLME-NNKTIQTLTLCLGAITTLFTAICALTQNDIKKIVAFST 306 (602)
T ss_pred CHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5342067635-899099999876899860999999988874-17999999999999999999999985231878999988
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 11244211111121577888864300232010011000026787408764550210466523211478999986530366
Q gi|254780867|r 304 IGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGI 383 (478)
Q Consensus 304 i~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~Gl 383 (478)
T Consensus 307 ~SQLGlMm~~iglg~~--~lA~fHL~tHA~FKAlLFL~aG~iIH~~~-~~QDir~mGgl~~~~P~t~~~~~i~slaL~G~ 383 (602)
T MTH00108 307 SSQLGLMMVTIGINQP--HLAFLHICTHAFFKAMLFMCSGSIIHNLN-DEQDIRKMGGLFKTLPFTSTALIIGSLALTGM 383 (602)
T ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9899999999855738--89999999999999999982309998258-85418987597520479999999999998476
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CHHHHHHHHHH
Q ss_conf 5000067599999999962849999-999999999999999999999649987786556733-21899999999
Q gi|254780867|r 384 PPFAGFFGKYFLLISAVKREFYVLA-IVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKE-MRLFIFGSILF 455 (478)
Q Consensus 384 Pp~~GF~sK~~i~~~~~~~~~~~~~-~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~ 455 (478)
T Consensus 384 PflsGFySKD~IlE~~~~s~~n~~~~~l~~~~~~lT~~YS~Rl~~~~~~~~~~~~~~~~~~e~~~~~~~pl~~L 457 (602)
T MTH00108 384 PFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRL 457 (602)
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 32107876899999998656289999999999999999999999999708998888787677967899999999