HHsearch alignment for GI: 254780867 and conserved domain: MTH00112
>MTH00112 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=434.32 Aligned_cols=303 Identities=26% Similarity=0.428 Sum_probs=263.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 06679999999999873146102212457778877776653200013445555540146204679988988530010000
Q gi|254780867|r 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCT 187 (478)
Q Consensus 108 f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~ 187 (478)
T Consensus 5 ~ll~~~~lilG~~~~~sS~~~~~~wvglEl~~ls~~~Li~-~~~~~~s~Ea~~KYFl~~~~~S~~~L~g~~l~y~~tg~~ 83 (345)
T MTH00112 5 KLIITTSLILGTLITISSNHWLLAWTGLEINTLAIIPLIS-KSHHPRAIEAATKYFLTQAAASALILFSSTTNAWNTGQW 83 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999998999999999999999999998-699951899999999999999999999999999998380
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 01222211101343100001222211234444432110001210122100123333210000023211111244000112
Q gi|254780867|r 188 GFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPML 267 (478)
Q Consensus 188 ~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~ 267 (478)
T Consensus 84 ~i~~~~~~~-----------~~~li~~~l~~Klg~~PfH~W~Pdv~~g~~~~~~~~lst~~Kia~~~il~~~~~~~~--- 149 (345)
T MTH00112 84 DITQLTNPT-----------SCTILTLALAMKLGLAPFHFWLPEVLQGSTTTTALILLTWQKLAPLTLLLMTSNSLN--- 149 (345)
T ss_pred HHHHHCCHH-----------HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC---
T ss_conf 676521268-----------999999999999813424410999985796889999999999999999999822210---
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHH
Q ss_conf 22100000122210222200000124454435642111244211111121577888864300232010011000026787
Q gi|254780867|r 268 SGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRR 347 (478)
Q Consensus 268 ~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~ 347 (478)
T Consensus 150 ---~~il~~~~~lS~~vG~~~al~Q~~iKrlLAYSSIsh~G~ml~~l~~~~~---~~~~~~~~Y~i~~~~~f~~~~~~-- 221 (345)
T MTH00112 150 ---TTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYAPK---LTLLTFYLYIIMTTTMFLTLNTT-- 221 (345)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf ---4999999999999999999842008999999999999999999998699---99999999999999999999997--
Q ss_pred HCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40876455021046652321147899998653036650000675999999999628499999999999999999999999
Q gi|254780867|r 348 KDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVIS 427 (478)
Q Consensus 348 ~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~ 427 (478)
T Consensus 222 ----~~~~i~~l~~l~~~~p~~~~~~~i~llSLaGlPP~~GF~~K~~i~~~~i~~~~~~l~~i~il~S~isl~yYlRi~y 297 (345)
T MTH00112 222 ----STKTIKDMGTSWTKSPMLNATLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATTMAMLSLLSLFFYLRLAY 297 (345)
T ss_pred ----CCCCHHHHHCCHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----6775998728241009999999999987265652115889999999999848499999999999999999999999
Q ss_pred HHHCCCCCCC
Q ss_conf 9964998778
Q gi|254780867|r 428 IMWFDQSTEC 437 (478)
Q Consensus 428 ~~f~~~~~~~ 437 (478)
T Consensus 298 ~~~~~~~~~~ 307 (345)
T MTH00112 298 YSTITLPPNT 307 (345)
T ss_pred HHHHHCCCCC
T ss_conf 9998679999