HHsearch alignment for GI: 254780867 and conserved domain: MTH00127
>MTH00127 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=496.32 Aligned_cols=403 Identities=15% Similarity=0.182 Sum_probs=342.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 00316764100799999999999999999999996321002-24206679999999999873146102212457778877
Q gi|254780867|r 64 IGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFS-CFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFAL 142 (478)
Q Consensus 64 ~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~-~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~ 142 (478)
T Consensus 51 ~~~~~~lg~D~lS~~li~Lt~~l~~l~ilaS~~~~~~~~~~~~~~f~~l~l~l~~~li~~F~s~dl~lFYiffE~~LIP~ 130 (459)
T MTH00127 51 SSLNPYMATDPLSTPLLVLTCWLLPLMILASQNHTSPEPINRQRTYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPT 130 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57639983768799999999999999999955886216200588999999999999999999978999999999999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77665320001344555554014620467998898853001000001222211101343100001222211234444432
Q gi|254780867|r 143 YVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMAL 222 (478)
Q Consensus 143 ~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~ 222 (478)
T Consensus 131 ~~LI~~WG~q~eR~~A~~~~l~YTl~gSl~lL~~i~~l~~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~laF~vK~Pl 210 (459)
T MTH00127 131 LIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLSMLTLQYSQPLQLSSWGDKLWWAGCLLAFLVKMPL 210 (459)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999828948899999999999999999999999999985588409999874330120478999999999999996588
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11000121012210012333321000002321111124400011222100000122210222200000124454435642
Q gi|254780867|r 223 VPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYS 302 (478)
Q Consensus 223 fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAyS 302 (478)
T Consensus 211 fp~H~WLPkAHvEAP~~gSmiLAgvLlKlG~YGliR~~~~l~p~~~~~~~~~i~l~l~g~i~~slicl~Q~DlK~liAYS 290 (459)
T MTH00127 211 YGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIILALWGIIMTGSICLRQTDLKSLIAYS 290 (459)
T ss_pred CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 88866583643519749999999999988899999999988588999999999999999999999999801768998886
Q ss_pred CCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 111244211111121-5778888643002320100110000267874087645502104665232114789999865303
Q gi|254780867|r 303 SIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLA 381 (478)
Q Consensus 303 si~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~ 381 (478)
T Consensus 291 SVsHMG~v~~gi~~~~~~g~~Gal~~miaHGl~ss~LF~lag~~y~r~~--tR~i~~~~Gl~~~~P~~~~~~~l~~lan~ 368 (459)
T MTH00127 291 SVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTH--SRTMLLARGLQMILPLMATWWFIASLANL 368 (459)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 6999999999999766778999999999999999999999999999517--61588839978775899999999999872
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHHH
Q ss_conf 6650000675999999999628499999999999999999999999996499877865---5673321899999999999
Q gi|254780867|r 382 GIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVV---VVAKEMRLFIFGSILFVTG 458 (478)
Q Consensus 382 GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 458 (478)
T Consensus 369 glPp~~nF~gE~~i~~~~~~~~-~~~~~~~~~~~~lsa~YsL~l~~~~~~G~~~~~~~~~~~~~~rE~~~l~~h~~pl~l 447 (459)
T MTH00127 369 ALPPLPNLMGELMIITSLFNWS-PWTLALTGAGTLITAGYSLYMFLMTQRGPLPAHIIALEPSHTREHLLMALHLIPLLL 447 (459)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7987464889999999999985-999999999999999999999999664998040236899727899999999999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99997676589
Q gi|254780867|r 459 YFLIENILNSS 469 (478)
Q Consensus 459 ~~~~~~~~~~~ 469 (478)
T Consensus 448 l~l~p~li~~w 458 (459)
T MTH00127 448 LILKPELIWGW 458 (459)
T ss_pred HHHHHHHHHCC
T ss_conf 99919999406