HHsearch alignment for GI: 254780867 and conserved domain: MTH00135
>MTH00135 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=412.96 Aligned_cols=300 Identities=26% Similarity=0.446 Sum_probs=259.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 06679999999999873146102212457778877776653200013445555540146204679988988530010000
Q gi|254780867|r 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCT 187 (478)
Q Consensus 108 f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~ 187 (478)
T Consensus 6 ~~~ll~~l~lgt~i~~sS~~w~~~w~gLEln~ls~ipLi~~-~~~~~s~Eaa~KYFliqa~aS~~lL~~~~~~~~~tg~~ 84 (347)
T MTH00135 6 LTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQ-HHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQW 84 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999988999999999999999999877-99983899999999999999999999999999999826
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 01222211101343100001222211234444432110001210122100123333210000023211111244000112
Q gi|254780867|r 188 GFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPML 267 (478)
Q Consensus 188 ~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~ 267 (478)
T Consensus 85 ~i~~~~~~~-----------~~~li~~~l~~Klg~aPfH~W~Pdv~~g~~~~~~~~l~t~qKiap~~ll~~~~~------ 147 (347)
T MTH00135 85 DIQQLSHPL-----------ATTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP------ 147 (347)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_conf 888776599-----------999999999999803408864999983897899999999999999999999851------
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHH
Q ss_conf 22100000122210222200000124454435642111244211111121577888864300232010011000026787
Q gi|254780867|r 268 SGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRR 347 (478)
Q Consensus 268 ~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~ 347 (478)
T Consensus 148 -~~~~~l~~l~~lS~~vG~~~al~Q~~lkrlLAYSSIsh~Gwml~~l~~~~~---~~~~~~~~Y~~~~~~~f~~~~~--- 220 (347)
T MTH00135 148 -TNPTLLITLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPS---LTLLALLTYIIMTSSAFLTFKL--- 220 (347)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---
T ss_conf -009999999999999999987643416799999988889999999997378---9999999999999999999998---
Q ss_pred HCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40876455021046652321147899998653036650000675999999999628499999999999999999999999
Q gi|254780867|r 348 KDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVIS 427 (478)
Q Consensus 348 ~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~ 427 (478)
T Consensus 221 ---~~~~~i~~l~~~~~~~p~~~~~~~i~llSLaGlPP~~GF~~K~~il~~li~~~~~~la~i~il~SlislfyYlRi~y 297 (347)
T MTH00135 221 ---NSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLCY 297 (347)
T ss_pred ---HCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---37358988756142019999999999999853216668999999999999828499999999999999999999999
Q ss_pred HHHCCCCC
Q ss_conf 99649987
Q gi|254780867|r 428 IMWFDQST 435 (478)
Q Consensus 428 ~~f~~~~~ 435 (478)
T Consensus 298 ~~~~~~~p 305 (347)
T MTH00135 298 AMTLTISP 305 (347)
T ss_pred HHHHCCCC
T ss_conf 99971899