HHsearch alignment for GI: 254780867 and conserved domain: MTH00135

>MTH00135 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00  E-value=0  Score=412.96  Aligned_cols=300  Identities=26%  Similarity=0.446  Sum_probs=259.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             06679999999999873146102212457778877776653200013445555540146204679988988530010000
Q gi|254780867|r  108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCT  187 (478)
Q Consensus       108 f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~  187 (478)
T Consensus         6 ~~~ll~~l~lgt~i~~sS~~w~~~w~gLEln~ls~ipLi~~-~~~~~s~Eaa~KYFliqa~aS~~lL~~~~~~~~~tg~~   84 (347)
T MTH00135          6 LTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQ-HHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQW   84 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999988999999999999999999877-99983899999999999999999999999999999826


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf             01222211101343100001222211234444432110001210122100123333210000023211111244000112
Q gi|254780867|r  188 GFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPML  267 (478)
Q Consensus       188 ~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~  267 (478)
T Consensus        85 ~i~~~~~~~-----------~~~li~~~l~~Klg~aPfH~W~Pdv~~g~~~~~~~~l~t~qKiap~~ll~~~~~------  147 (347)
T MTH00135         85 DIQQLSHPL-----------ATTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP------  147 (347)
T ss_pred             HHHHHHHHH-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_conf             888776599-----------999999999999803408864999983897899999999999999999999851------


Q ss_pred             CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHH
Q ss_conf             22100000122210222200000124454435642111244211111121577888864300232010011000026787
Q gi|254780867|r  268 SGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRR  347 (478)
Q Consensus       268 ~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~  347 (478)
T Consensus       148 -~~~~~l~~l~~lS~~vG~~~al~Q~~lkrlLAYSSIsh~Gwml~~l~~~~~---~~~~~~~~Y~~~~~~~f~~~~~---  220 (347)
T MTH00135        148 -TNPTLLITLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPS---LTLLALLTYIIMTSSAFLTFKL---  220 (347)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---
T ss_conf             -009999999999999999987643416799999988889999999997378---9999999999999999999998---


Q ss_pred             HCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40876455021046652321147899998653036650000675999999999628499999999999999999999999
Q gi|254780867|r  348 KDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVIS  427 (478)
Q Consensus       348 ~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~  427 (478)
T Consensus       221 ---~~~~~i~~l~~~~~~~p~~~~~~~i~llSLaGlPP~~GF~~K~~il~~li~~~~~~la~i~il~SlislfyYlRi~y  297 (347)
T MTH00135        221 ---NSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLCY  297 (347)
T ss_pred             ---HCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---37358988756142019999999999999853216668999999999999828499999999999999999999999


Q ss_pred             HHHCCCCC
Q ss_conf             99649987
Q gi|254780867|r  428 IMWFDQST  435 (478)
Q Consensus       428 ~~f~~~~~  435 (478)
T Consensus       298 ~~~~~~~p  305 (347)
T MTH00135        298 AMTLTISP  305 (347)
T ss_pred             HHHHCCCC
T ss_conf             99971899