HHsearch alignment for GI: 254780867 and conserved domain: MTH00163

>MTH00163 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=480.01  Aligned_cols=372  Identities=21%  Similarity=0.245  Sum_probs=324.5

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             97132210031676410079999999999999999999999632100224206679999999999873146102212457
Q gi|254780867|r   57 LIMPYEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLE  136 (478)
Q Consensus        57 ~~~~~~~~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E  136 (478)
T Consensus        39 ~~~~~~~~~~s~~f~~D~lS~~li~Ls~~I~~l~~l~S~~~~~~~~-~~~~f~~l~l~l~~~l~~~F~s~nl~~FyiffE  117 (446)
T MTH00163         39 LSSGSYFSNISYFFGVDLLSFGLILLSLWICLLMILSSESVYKYNN-YSNLFLFLVLLLLLFLFLTFSSMNLLLFYIFFE  117 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7323488777499820786899999999999999999668874264-068999999999999999999968999999999


Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             77887777665320001344555554014620467998898853001000001222211101343100001222211234
Q gi|254780867|r  137 LQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGL  216 (478)
Q Consensus       137 ~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~  216 (478)
T Consensus       118 ~~lip~~~LI~~wG~~~er~~A~~y~~~yt~~~Sl~lL~~i~~l~~~~gs~~~~~~~~~~~------~~~~~~~~~~laF  191 (446)
T MTH00163        118 SSLIPTLILILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNSLGSLSFYLLNSFGF------NSFLLYLSMILAF  191 (446)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHHHHH
T ss_conf             9999999999983897788999999999999999999999999999727237999987577------9999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44443211000121012210012333321000002321111124400011222100000122210222200000124454
Q gi|254780867|r  217 FFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLK  296 (478)
Q Consensus       217 ~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~K  296 (478)
T Consensus       192 ~vK~p~fp~H~WLP~AhveAP~~gSmiLAgvllKlG~YGliR~~~~~~~~~~~~~~~l~~l~l~~~~~~sl~al~Q~DlK  271 (446)
T MTH00163        192 LVKMPMFLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMPLFSSLGLKFSYIWISISLVGGVLVSLICLRQTDLK  271 (446)
T ss_pred             HHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99648044634050655238814689999999988887789999870005789999999999999999999999876378


Q ss_pred             CCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHH
Q ss_conf             435642111244211111121-5778888643002320100110000267874087645502104665232114789999
Q gi|254780867|r  297 RLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTI  375 (478)
Q Consensus       297 rllAySsi~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i  375 (478)
T Consensus       272 ~LiAYSSVsHMG~v~~gi~~~~~~g~~gal~~mi~Hgl~ss~LF~~~g~~y~~~~--sR~i~~~~Gl~~~~P~l~~~~~l  349 (446)
T MTH00163        272 SLIAYSSVAHMGLVLGGLMTFSYWGLNGSLLMMIAHGLCSSGLFCLANIVYERLG--SRSLLINKGLLNFMPSMSLWWFL  349 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHCCCHHHHHHHHHHHHH
T ss_conf             9999988999999999999825999999999999999999999999999999707--62299849947662899999999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             865303665000067599999999962849999999999999999999999999649987786
Q gi|254780867|r  376 FLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECV  438 (478)
Q Consensus       376 ~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~  438 (478)
T Consensus       350 ~~~~n~g~Pp~~~F~gE~~i~~s~~~~~-~~~~~~~~~~~~ls~~Ysl~ly~~~~hG~~~~~~  411 (446)
T MTH00163        350 LSSSNMAAPPSLNLLGEISLLNSILSWS-WLSMIMLMLLSFFSAAYSLYLYSYSQHGKYYSGL  411 (446)
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf             9999844787441999999999999996-9999999999999999999999996569975632