HHsearch alignment for GI: 254780867 and conserved domain: MTH00163
>MTH00163 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=480.01 Aligned_cols=372 Identities=21% Similarity=0.245 Sum_probs=324.5
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 97132210031676410079999999999999999999999632100224206679999999999873146102212457
Q gi|254780867|r 57 LIMPYEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLE 136 (478)
Q Consensus 57 ~~~~~~~~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E 136 (478)
T Consensus 39 ~~~~~~~~~~s~~f~~D~lS~~li~Ls~~I~~l~~l~S~~~~~~~~-~~~~f~~l~l~l~~~l~~~F~s~nl~~FyiffE 117 (446)
T MTH00163 39 LSSGSYFSNISYFFGVDLLSFGLILLSLWICLLMILSSESVYKYNN-YSNLFLFLVLLLLLFLFLTFSSMNLLLFYIFFE 117 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7323488777499820786899999999999999999668874264-068999999999999999999968999999999
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 77887777665320001344555554014620467998898853001000001222211101343100001222211234
Q gi|254780867|r 137 LQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGL 216 (478)
Q Consensus 137 ~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~ 216 (478)
T Consensus 118 ~~lip~~~LI~~wG~~~er~~A~~y~~~yt~~~Sl~lL~~i~~l~~~~gs~~~~~~~~~~~------~~~~~~~~~~laF 191 (446)
T MTH00163 118 SSLIPTLILILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNSLGSLSFYLLNSFGF------NSFLLYLSMILAF 191 (446)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHHHHH
T ss_conf 9999999999983897788999999999999999999999999999727237999987577------9999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44443211000121012210012333321000002321111124400011222100000122210222200000124454
Q gi|254780867|r 217 FFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLK 296 (478)
Q Consensus 217 ~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~K 296 (478)
T Consensus 192 ~vK~p~fp~H~WLP~AhveAP~~gSmiLAgvllKlG~YGliR~~~~~~~~~~~~~~~l~~l~l~~~~~~sl~al~Q~DlK 271 (446)
T MTH00163 192 LVKMPMFLVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMPLFSSLGLKFSYIWISISLVGGVLVSLICLRQTDLK 271 (446)
T ss_pred HHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99648044634050655238814689999999988887789999870005789999999999999999999999876378
Q ss_pred CCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHH
Q ss_conf 435642111244211111121-5778888643002320100110000267874087645502104665232114789999
Q gi|254780867|r 297 RLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTI 375 (478)
Q Consensus 297 rllAySsi~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i 375 (478)
T Consensus 272 ~LiAYSSVsHMG~v~~gi~~~~~~g~~gal~~mi~Hgl~ss~LF~~~g~~y~~~~--sR~i~~~~Gl~~~~P~l~~~~~l 349 (446)
T MTH00163 272 SLIAYSSVAHMGLVLGGLMTFSYWGLNGSLLMMIAHGLCSSGLFCLANIVYERLG--SRSLLINKGLLNFMPSMSLWWFL 349 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999988999999999999825999999999999999999999999999999707--62299849947662899999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 865303665000067599999999962849999999999999999999999999649987786
Q gi|254780867|r 376 FLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECV 438 (478)
Q Consensus 376 ~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~ 438 (478)
T Consensus 350 ~~~~n~g~Pp~~~F~gE~~i~~s~~~~~-~~~~~~~~~~~~ls~~Ysl~ly~~~~hG~~~~~~ 411 (446)
T MTH00163 350 LSSSNMAAPPSLNLLGEISLLNSILSWS-WLSMIMLMLLSFFSAAYSLYLYSYSQHGKYYSGL 411 (446)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 9999844787441999999999999996-9999999999999999999999996569975632