HHsearch alignment for GI: 254780867 and conserved domain: MTH00200
>MTH00200 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=437.92 Aligned_cols=307 Identities=30% Similarity=0.532 Sum_probs=268.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 42066799999999998731461022124577788777766532000134455555401462046799889885300100
Q gi|254780867|r 106 FEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTG 185 (478)
Q Consensus 106 ~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~g 185 (478)
T Consensus 4 ~~~~il~l~~~~g~~~~~~s~~l~~l~v~lEl~sl~~~~Li~~-~~~~~s~eaa~KYfi~~~~~S~l~L~g~~~~~~~~g 82 (343)
T MTH00200 4 YISPLLILSMVLGTLLILSSSHWFFIWLGLEINTLAFIPLLAW-QHHPRAVEATVKYFIIQAVASALLLFGGLLNAWSSG 82 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7999999999999999999989999999999999999999984-998579999999999999999999999999999985
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 00012222111013431000012222112344444321100012101221001233332100000232111112440001
Q gi|254780867|r 186 CTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWP 265 (478)
Q Consensus 186 s~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~ 265 (478)
T Consensus 83 ~~~~~~~~~~l-----------~~~lil~gl~~K~g~fPfH~Wlpdvy~~~~~~~~~lls~~~Ki~~~~~l~~~~~~~-- 149 (343)
T MTH00200 83 EWGISELLGPL-----------SETLILLAIALKLGLAPGHFWVPDVLQGLNLITGLILSTWQKLAPLALLTQLASEL-- 149 (343)
T ss_pred CHHHHHHHHHH-----------HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_conf 53367898899-----------99999999999974002487873174369889999999999999999999987320--
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHH
Q ss_conf 12221000001222102222000001244544356421112442111111215778888643002320100110000267
Q gi|254780867|r 266 MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSL 345 (478)
Q Consensus 266 ~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~ 345 (478)
T Consensus 150 ----~~~~l~~l~~lS~i~G~l~al~Q~~iKrllAYSSI~~~G~il~~l~~~~~---~~~~~~~~y~~~~~~l~~~~~~- 221 (343)
T MTH00200 150 ----NSNILLLLGVLSALVGGWGGLNQTQLRKLLAFSSIAHLGWLLSGIVYGGL---LGLLYFLLYVILTLSLFLLLHT- 221 (343)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-
T ss_conf ----15899999999999999999852020257865379889999999998189---9999999999999999999999-
Q ss_pred HHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87408764550210466523211478999986530366500006759999999996284999999999999999999999
Q gi|254780867|r 346 RRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRV 425 (478)
Q Consensus 346 ~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~ 425 (478)
T Consensus 222 -----~~~~~i~~l~gl~~~~p~~a~~~~i~~LSL~GiPP~~GF~~K~~i~~~~~~~~~~~l~~i~li~S~is~~yYlRi 296 (343)
T MTH00200 222 -----LNSTKINSLSFSLGKSPLLSMLLLLTLLSLGGLPPFTGFFLKWLILQELGKQNLVIVATLLLLGSLLSLFYYLRL 296 (343)
T ss_pred -----HCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----668719877172101299999999999998402245359999999999998273999999999999999999999
Q ss_pred HHHHHCCCCCCCCC
Q ss_conf 99996499877865
Q gi|254780867|r 426 ISIMWFDQSTECVV 439 (478)
Q Consensus 426 ~~~~f~~~~~~~~~ 439 (478)
T Consensus 297 ~~~~~~~~~~~~~~ 310 (343)
T MTH00200 297 SYVSLLTLSPQQIM 310 (343)
T ss_pred HHHHHHCCCCCCCC
T ss_conf 99999808999965