HHsearch alignment for GI: 254780867 and conserved domain: MTH00200

>MTH00200 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00  E-value=0  Score=437.92  Aligned_cols=307  Identities=30%  Similarity=0.532  Sum_probs=268.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             42066799999999998731461022124577788777766532000134455555401462046799889885300100
Q gi|254780867|r  106 FEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTG  185 (478)
Q Consensus       106 ~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~g  185 (478)
T Consensus         4 ~~~~il~l~~~~g~~~~~~s~~l~~l~v~lEl~sl~~~~Li~~-~~~~~s~eaa~KYfi~~~~~S~l~L~g~~~~~~~~g   82 (343)
T MTH00200          4 YISPLLILSMVLGTLLILSSSHWFFIWLGLEINTLAFIPLLAW-QHHPRAVEATVKYFIIQAVASALLLFGGLLNAWSSG   82 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7999999999999999999989999999999999999999984-998579999999999999999999999999999985


Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf             00012222111013431000012222112344444321100012101221001233332100000232111112440001
Q gi|254780867|r  186 CTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWP  265 (478)
Q Consensus       186 s~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~  265 (478)
T Consensus        83 ~~~~~~~~~~l-----------~~~lil~gl~~K~g~fPfH~Wlpdvy~~~~~~~~~lls~~~Ki~~~~~l~~~~~~~--  149 (343)
T MTH00200         83 EWGISELLGPL-----------SETLILLAIALKLGLAPGHFWVPDVLQGLNLITGLILSTWQKLAPLALLTQLASEL--  149 (343)
T ss_pred             CHHHHHHHHHH-----------HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_conf             53367898899-----------99999999999974002487873174369889999999999999999999987320--


Q ss_pred             CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHH
Q ss_conf             12221000001222102222000001244544356421112442111111215778888643002320100110000267
Q gi|254780867|r  266 MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSL  345 (478)
Q Consensus       266 ~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~  345 (478)
T Consensus       150 ----~~~~l~~l~~lS~i~G~l~al~Q~~iKrllAYSSI~~~G~il~~l~~~~~---~~~~~~~~y~~~~~~l~~~~~~-  221 (343)
T MTH00200        150 ----NSNILLLLGVLSALVGGWGGLNQTQLRKLLAFSSIAHLGWLLSGIVYGGL---LGLLYFLLYVILTLSLFLLLHT-  221 (343)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             ----15899999999999999999852020257865379889999999998189---9999999999999999999999-


Q ss_pred             HHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             87408764550210466523211478999986530366500006759999999996284999999999999999999999
Q gi|254780867|r  346 RRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRV  425 (478)
Q Consensus       346 ~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~  425 (478)
T Consensus       222 -----~~~~~i~~l~gl~~~~p~~a~~~~i~~LSL~GiPP~~GF~~K~~i~~~~~~~~~~~l~~i~li~S~is~~yYlRi  296 (343)
T MTH00200        222 -----LNSTKINSLSFSLGKSPLLSMLLLLTLLSLGGLPPFTGFFLKWLILQELGKQNLVIVATLLLLGSLLSLFYYLRL  296 (343)
T ss_pred             -----HCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -----668719877172101299999999999998402245359999999999998273999999999999999999999


Q ss_pred             HHHHHCCCCCCCCC
Q ss_conf             99996499877865
Q gi|254780867|r  426 ISIMWFDQSTECVV  439 (478)
Q Consensus       426 ~~~~f~~~~~~~~~  439 (478)
T Consensus       297 ~~~~~~~~~~~~~~  310 (343)
T MTH00200        297 SYVSLLTLSPQQIM  310 (343)
T ss_pred             HHHHHHCCCCCCCC
T ss_conf             99999808999965