HHsearch alignment for GI: 254780867 and conserved domain: MTH00204
>MTH00204 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=571.07 Aligned_cols=397 Identities=21% Similarity=0.320 Sum_probs=345.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76410079999999999999999999999632100224206679999999999873146102212457778877776653
Q gi|254780867|r 69 AYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM 148 (478)
Q Consensus 69 ~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~ 148 (478)
T Consensus 78 ~lgvDglsl~l~lLt~~l~~i~~l~s~---~~~~~~~~~f~~~ll~l~~~~lg~f~s~dl~~fyvf~E~~lip~y~LIg~ 154 (486)
T MTH00204 78 VFAVDGVSLFFLLLTTLLIPICILISW---KSIKFLFKEFLLCLLFLEVLLIGVFLVLDLLLFYILFEGILIPMFLLIGV 154 (486)
T ss_pred HEEECHHHHHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 120463769999999999999999874---74024288999999999999999999817999999999999999999888
Q ss_pred HHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 20001344555554014620467998898853001000001222211101343100001222211234444432110001
Q gi|254780867|r 149 NRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMW 228 (478)
Q Consensus 149 ~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~W 228 (478)
T Consensus 155 wG~~~~r~~Aa~k~~lyt~~gs~~~L~gi~~ly~~~gs~~~~~l~~~~~~~---~~~~~~~~~~~l~f~vK~~~~P~H~W 231 (486)
T MTH00204 155 WGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYQITGTTDYQILLNIKLPL---STQKWALVGFFLSLAVKIPQIPFHIW 231 (486)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 299789999999999999998999999999999982843799999720331---47999999999999998625146376
Q ss_pred HHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2101221001233332100000232111112440001-122210000012221022220000012445443564211124
Q gi|254780867|r 229 IPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWP-MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHA 307 (478)
Q Consensus 229 lp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~-~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~ 307 (478)
T Consensus 232 LPda~~~APt~~S~llag~l~K~g~ygllR~~~~~~p~~~~~~~~~i~~l~~is~i~g~l~Al~Q~dlKrllAYSSIshm 311 (486)
T MTH00204 232 LPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPVIVMLSVIAVIYGSLMTCRQVDFKRLIAYSSVAHM 311 (486)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 25537889922778888999998788679888774431068888999998999999999999998888999999669999
Q ss_pred CCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHH
Q ss_conf 4211111121-577888864300232010011000026787408764550210466523211478999986530366500
Q gi|254780867|r 308 GYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPF 386 (478)
Q Consensus 308 G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~ 386 (478)
T Consensus 312 G~i~lgl~~~~~~g~~ga~~~mi~Hg~~~~~LF~~~g~i~~~~~--t~~i~~~gGL~~~~P~~a~~~~i~~la~~GlP~~ 389 (486)
T MTH00204 312 GLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHH--TRLIKYYRGVTLTMPLFVIIMLVLSLANMGIPLS 389 (486)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEHHHHCCHHHHCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999667478999999999999999999999999986048--5879996893444879999999999998189764
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 006759999999996284999999999999999999999999964998778655---67332189999999999999997
Q gi|254780867|r 387 AGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVV---VAKEMRLFIFGSILFVTGYFLIE 463 (478)
Q Consensus 387 ~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 463 (478)
T Consensus 390 ~gF~ge~~i~~g~~~~~-~~~~~~~~~~~vlsa~Y~l~~~~~~~~g~~~~~~~~~~d~~~~e~~~~~~L~~~~i~~Gi~P 468 (486)
T MTH00204 390 CNFVGEFFSLLAAFEYN-YGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNYLLFNRDLNRRELLAILPLLIAIFLGGIVP 468 (486)
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 75889999999999985-99999999999999999999999987599985444679999879999999999999999731
Q ss_pred HHHHHHHHHHH
Q ss_conf 67658999998
Q gi|254780867|r 464 NILNSSIMKIV 474 (478)
Q Consensus 464 ~~~~~~~~~~~ 474 (478)
T Consensus 469 ~~il~~i~~sv 479 (486)
T MTH00204 469 FPIIDLVKNSL 479 (486)
T ss_pred HHHHHHHHHHE
T ss_conf 98998887742