HHsearch alignment for GI: 254780867 and conserved domain: MTH00209

>MTH00209 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00  E-value=0  Score=484.23  Aligned_cols=388  Identities=20%  Similarity=0.252  Sum_probs=316.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             00316764100799999999999999999999996321002242066799999999998731461022124577788777
Q gi|254780867|r   64 IGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALY  143 (478)
Q Consensus        64 ~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~  143 (478)
T Consensus        43 ~~~~~~~~~D~~S~~f~~~v~~Is~~V~~yS~~YM~~d~~~-~rF~~~l~lFv~sMl~Lv~s~Nl~~l~lGWeglGl~Sy  121 (565)
T MTH00209         43 MSISFPLIIDWMSLSFSSVVLFISGSVMWFSNFYMAGEKFP-NRFCLITLLFVLSMNFLIFVPNLISLLLGWDGLGLVSF  121 (565)
T ss_pred             CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             27387520584289999999999999999989970599981-25999999999999999998159999999999999999


Q ss_pred             HHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             76653200013445555540146204679988988530010000012222111013431000012222112344444321
Q gi|254780867|r  144 VLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALV  223 (478)
Q Consensus       144 ~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~f  223 (478)
T Consensus       122 lLI~~y~~-~~s~~a~~~t~l~nRiGD~~lll~i~~~~-~~~~~~~~~~~~~------~~~~~~i~lll~laa~~KSAQ~  193 (565)
T MTH00209        122 CLVIYYQN-SKSLSAGMITILSNRVGDACLILSIAGML-CFGNWNIFTLNYQ------KGIGIVLSVLMVVAAMTKSAQI  193 (565)
T ss_pred             HHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99754097-69999999999999999999999999999-9763999999885------2289999999999998762207


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCC-EECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             100012101221001233332100-0002321111124400011222100000122210222200000124454435642
Q gi|254780867|r  224 PFHMWIPDVYEGSPMFMTAFLATI-PKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYS  302 (478)
Q Consensus       224 PfH~Wlp~a~~~ap~~~salls~~-~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAyS  302 (478)
T Consensus       194 Pfh~WLP~AMa-aPTPVSALvHssTlVtAGVylliR~~~~~~~-~~~~~~~ll~ig~~T~~~a~~~Al~q~DlKkiiA~S  271 (565)
T MTH00209        194 PFSAWLPAAMA-APTPVSALVHSSTLVTAGVYLMIRFSDQFFS-SPFVGWYVLLIGSLTTLMASMVANFESDLKKVIALS  271 (565)
T ss_pred             CCCHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             67311278746-9980999999879999767766450388774-599999999999999999999998444052576624


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             11124421111112157788886430023201001100002678740876455021046652321147899998653036
Q gi|254780867|r  303 SIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAG  382 (478)
Q Consensus       303 si~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~G  382 (478)
T Consensus       272 TlSQLG~M~~~iglg~~--~~a~fHL~~HA~fKalLFl~aG~vIh~~~-~~QDir~mggl~~~~P~t~~~~~i~~lsL~G  348 (565)
T MTH00209        272 TLSQLGLMMCSISLGGP--ELCLFHLVTHALFKALLFICAGNMIHSHG-HSQDIRSVGMLWYQMPITSICLNISNLALCG  348 (565)
T ss_pred             HHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHCCHHHHCCC-CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             89899999999976719--99999999889999999970407886058-8641887559975229999999999999856


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             65000067599999999962849999-99999999999999999999964998778655673321899999999999999
Q gi|254780867|r  383 IPPFAGFFGKYFLLISAVKREFYVLA-IVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFVTGYFL  461 (478)
Q Consensus       383 lPp~~GF~sK~~i~~~~~~~~~~~~~-~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (478)
T Consensus       349 ~PflsGFySKd~Ile~~~~~~~~~~~~~~~~~~~~~T~~Ys~Rl~~~~~~~~~~~~~~~~~~e~~~~m~~p~~~L~~~Si  428 (565)
T MTH00209        349 IPFLAGFYSKDLILESMLESKINFMTLIMFFIATALTVSYSLRMSYFSLWGSNSSKSLSSLLEENKDMLKPMLVLTLGSI  428 (565)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             61640899999999999877627999999999999999999999999981899998723064477358999999999999


Q ss_pred             HHHH
Q ss_conf             9767
Q gi|254780867|r  462 IENI  465 (478)
Q Consensus       462 ~~~~  465 (478)
T Consensus       429 ~~G~  432 (565)
T MTH00209        429 VGGS  432 (565)
T ss_pred             HHHH
T ss_conf             9999