HHsearch alignment for GI: 254780867 and conserved domain: MTH00209
>MTH00209 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00 E-value=0 Score=484.23 Aligned_cols=388 Identities=20% Similarity=0.252 Sum_probs=316.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 00316764100799999999999999999999996321002242066799999999998731461022124577788777
Q gi|254780867|r 64 IGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALY 143 (478)
Q Consensus 64 ~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~ 143 (478)
T Consensus 43 ~~~~~~~~~D~~S~~f~~~v~~Is~~V~~yS~~YM~~d~~~-~rF~~~l~lFv~sMl~Lv~s~Nl~~l~lGWeglGl~Sy 121 (565)
T MTH00209 43 MSISFPLIIDWMSLSFSSVVLFISGSVMWFSNFYMAGEKFP-NRFCLITLLFVLSMNFLIFVPNLISLLLGWDGLGLVSF 121 (565)
T ss_pred CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 27387520584289999999999999999989970599981-25999999999999999998159999999999999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76653200013445555540146204679988988530010000012222111013431000012222112344444321
Q gi|254780867|r 144 VLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALV 223 (478)
Q Consensus 144 ~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~f 223 (478)
T Consensus 122 lLI~~y~~-~~s~~a~~~t~l~nRiGD~~lll~i~~~~-~~~~~~~~~~~~~------~~~~~~i~lll~laa~~KSAQ~ 193 (565)
T MTH00209 122 CLVIYYQN-SKSLSAGMITILSNRVGDACLILSIAGML-CFGNWNIFTLNYQ------KGIGIVLSVLMVVAAMTKSAQI 193 (565)
T ss_pred HHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99754097-69999999999999999999999999999-9763999999885------2289999999999998762207
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCC-EECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 100012101221001233332100-0002321111124400011222100000122210222200000124454435642
Q gi|254780867|r 224 PFHMWIPDVYEGSPMFMTAFLATI-PKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYS 302 (478)
Q Consensus 224 PfH~Wlp~a~~~ap~~~salls~~-~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAyS 302 (478)
T Consensus 194 Pfh~WLP~AMa-aPTPVSALvHssTlVtAGVylliR~~~~~~~-~~~~~~~ll~ig~~T~~~a~~~Al~q~DlKkiiA~S 271 (565)
T MTH00209 194 PFSAWLPAAMA-APTPVSALVHSSTLVTAGVYLMIRFSDQFFS-SPFVGWYVLLIGSLTTLMASMVANFESDLKKVIALS 271 (565)
T ss_pred CCCHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67311278746-9980999999879999767766450388774-599999999999999999999998444052576624
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 11124421111112157788886430023201001100002678740876455021046652321147899998653036
Q gi|254780867|r 303 SIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAG 382 (478)
Q Consensus 303 si~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~G 382 (478)
T Consensus 272 TlSQLG~M~~~iglg~~--~~a~fHL~~HA~fKalLFl~aG~vIh~~~-~~QDir~mggl~~~~P~t~~~~~i~~lsL~G 348 (565)
T MTH00209 272 TLSQLGLMMCSISLGGP--ELCLFHLVTHALFKALLFICAGNMIHSHG-HSQDIRSVGMLWYQMPITSICLNISNLALCG 348 (565)
T ss_pred HHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHCCHHHHCCC-CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 89899999999976719--99999999889999999970407886058-8641887559975229999999999999856
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 65000067599999999962849999-99999999999999999999964998778655673321899999999999999
Q gi|254780867|r 383 IPPFAGFFGKYFLLISAVKREFYVLA-IVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFVTGYFL 461 (478)
Q Consensus 383 lPp~~GF~sK~~i~~~~~~~~~~~~~-~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (478)
T Consensus 349 ~PflsGFySKd~Ile~~~~~~~~~~~~~~~~~~~~~T~~Ys~Rl~~~~~~~~~~~~~~~~~~e~~~~m~~p~~~L~~~Si 428 (565)
T MTH00209 349 IPFLAGFYSKDLILESMLESKINFMTLIMFFIATALTVSYSLRMSYFSLWGSNSSKSLSSLLEENKDMLKPMLVLTLGSI 428 (565)
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 61640899999999999877627999999999999999999999999981899998723064477358999999999999
Q ss_pred HHHH
Q ss_conf 9767
Q gi|254780867|r 462 IENI 465 (478)
Q Consensus 462 ~~~~ 465 (478)
T Consensus 429 ~~G~ 432 (565)
T MTH00209 429 VGGS 432 (565)
T ss_pred HHHH
T ss_conf 9999