HHsearch alignment for GI: 254780867 and conserved domain: PRK02546
>PRK02546 NAD(P)H-quinone oxidoreductase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=570.13 Aligned_cols=399 Identities=19% Similarity=0.292 Sum_probs=337.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76410079999999999999999999999632100224206679999999999873146102212457778877776653
Q gi|254780867|r 69 AYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM 148 (478)
Q Consensus 69 ~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~ 148 (478)
T Consensus 85 ~lgvDglSl~lvlLt~~l~~l~~l~s---~~-~~~~~~~f~~l~L~~~~~m~gvf~a~Dl~~fyvf~E~~~i~sy~LIg~ 160 (531)
T PRK02546 85 SVGADGLSMPLILLTGFITTLAVLAA---WP-VTFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAI 160 (531)
T ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHC---CC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98525668999999999999999740---54-466630999999999999999999807999999999999999999998
Q ss_pred HHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2000134455555401462046799889885300100000--12222111013431000012222112344444321100
Q gi|254780867|r 149 NRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTG--FSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFH 226 (478)
Q Consensus 149 ~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~--~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH 226 (478)
T Consensus 161 ~g~~-~~~~Aa~k~~l~t~~gs~~lL~~~~~l~~~~g~~~f~~~~l~~~---~~~~~~~~~~~~~~li~f~vK~~~fP~H 236 (531)
T PRK02546 161 WGGK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPSFDMTHLAAK---DFGLGFQLLCYAGLLIAYGVKLPIVPLH 236 (531)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 0989-99999999999997779999999999999848737999999854---3562799999999999999850103451
Q ss_pred HHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0121012210012333321000002321111124400011-222100000122210222200000124454435642111
Q gi|254780867|r 227 MWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPM-LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIG 305 (478)
Q Consensus 227 ~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~-~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~ 305 (478)
T Consensus 237 ~WLPdA~~~aPt~~S~llagvl~K~G~Y~liR~~~~l~p~~~~~~~~~l~~lg~itii~gal~Al~Q~DiKrllAYSSIs 316 (531)
T PRK02546 237 TWLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSIS 316 (531)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26688877899067888889999874453499877641257888725999999999999999999873389999999999
Q ss_pred CCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 244211111121-5778888643002320100110000267874087645502104665232114789999865303665
Q gi|254780867|r 306 HAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIP 384 (478)
Q Consensus 306 q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlP 384 (478)
T Consensus 317 hmG~i~lGi~~~~~~g~~Gai~~~~~H~~~ka~LFl~~G~i~~r~g--t~~i~~lgGL~~~mP~~~~~f~i~~la~~GlP 394 (531)
T PRK02546 317 HMGFVLIGIGSFSDLGTSGAMLQMISHGLIGASLFFLVGATYDRTH--TLMLDEMGGVGQKMRKMFAMWTACSLASLALP 394 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999715999999999999999999999999818999739--61678718868775599999999999987342
Q ss_pred HHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCCCCCHHHHHHH
Q ss_conf 00006759999999996284------999999999999999999999999964998778------655673321899999
Q gi|254780867|r 385 PFAGFFGKYFLLISAVKREF------YVLAIVALLSSVISAYYYLRVISIMWFDQSTEC------VVVVAKEMRLFIFGS 452 (478)
Q Consensus 385 p~~GF~sK~~i~~~~~~~~~------~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~------~~~~~~~~~~~~~~~ 452 (478)
T Consensus 395 ~~~GF~sk~lil~G~~~~~~~~~~~~~~~~~~a~~g~vl~a~Y~l~~~~rvf~G~~~~~~~~~~~~~dl~~rE~~~~~~l 474 (531)
T PRK02546 395 GMSGFVAELMVFVGFATDDAYTLPFRVVVVFLAAIGVILTPIYLLSMLREIFFGKENKELVSHENLVDAEPREVYIIACL 474 (531)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 02609999999972210454310699999999999999999999999999975999854343456878878899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999767658999998751
Q gi|254780867|r 453 ILFVTGYFLIENILNSSIMKIVMSL 477 (478)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~l 477 (478)
T Consensus 475 ~~~~~~~G~yP~~~l~~~~~~v~~l 499 (531)
T PRK02546 475 LVPIIGIGLYPKLVTQSYDATINQL 499 (531)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999758899870328899999