HHsearch alignment for GI: 254780867 and conserved domain: PRK05777
>PRK05777 NADH dehydrogenase subunit N; Provisional.
Probab=100.00 E-value=0 Score=636.91 Aligned_cols=470 Identities=39% Similarity=0.679 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 77862999999999999999999986402301589999999999999999--9997132210031676410079999999
Q gi|254780867|r 5 SFINDLRLCIPEIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALF--FLLIMPYEGIGLGGAYISDRFSYFIKAI 82 (478)
Q Consensus 5 ~~~~~l~lllP~i~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i~l~--~~~~~~~~~~~~~~~~~~D~~s~~~~~l 82 (478)
T Consensus 3 ~~~~~~~~llP~lill~~al~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~ls~~~~~l 82 (478)
T PRK05777 3 LMSLNLQLLLPELILLIGALALLLVDLFIGRRNRRLTATLAVAGLVVALVSLLFVASGGTGVAFNGMFVVDGFALFLKGL 82 (478)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEECHHHHHHHHH
T ss_conf 03710999999999999999999999975403368999999999999999999980787520312014775678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999999999999963210022420667999999999987314610221245777887777665320001344555554
Q gi|254780867|r 83 LLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKY 162 (478)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky 162 (478)
T Consensus 83 ~~~~~~~~~l~s~~~~~~---~~~~f~~l~l~~~~g~~~~~~s~dl~~l~v~~El~sl~~y~Li~~~~~~~~s~eAa~ky 159 (478)
T PRK05777 83 ILLASALTLVLAREYLKD---RNGEFYLLVLFAVLGMMVMVSANDLLTLFLGLELLSLPLYALAALRRDRRRSLEAAIKY 159 (478)
T ss_pred HHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999999999866---77659999999999999999983699999999999999998798727988999999999
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 01462046799889885300100000122221110134-31000012222112344444321100012101221001233
Q gi|254780867|r 163 FVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGH-RSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMT 241 (478)
Q Consensus 163 ~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~-~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~s 241 (478)
T Consensus 160 ~l~~~~~s~~lL~gi~~ly~~tGs~~~~~l~~~~~~~~~~~~~~~~~~~l~l~g~~~K~a~~PfH~WlPday~~APt~vs 239 (478)
T PRK05777 160 FVLGALASGFLLYGMSLLYGATGSLSLAGIAKALADGMLNSLLLLFGLVFLLAGLAFKLSAVPFHMWTPDVYEGAPTPVT 239 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHH
T ss_conf 99979999999999999998819974999999875366541899999999999999872737656141436358981687
Q ss_pred CCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-H
Q ss_conf 33210000023211111244000-112221000001222102222000001244544356421112442111111215-7
Q gi|254780867|r 242 AFLATIPKFATTMALCRITSVFW-PMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGM-L 319 (478)
Q Consensus 242 alls~~~~~~~~~~l~r~~~~~~-~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~-~ 319 (478)
T Consensus 240 a~ls~~~k~a~~~~l~r~~~~~~~~~~~~~~~~l~~l~~~s~~~g~l~Al~Q~d~KRlLAYSsIs~~G~il~gi~~~~~~ 319 (478)
T PRK05777 240 AFLATAPKIAAFAVLLRLFYVAFGPLSEDWQQVLAIIAILSMIVGNLAAISQTNIKRLLAYSSIAHMGFLLVGLAAGTVA 319 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 89888999999999999999861544799999999999999999999999886064788767986463999999972688
Q ss_pred HHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 78888643002320100110000267874087645502104665232114789999865303665000067599999999
Q gi|254780867|r 320 GIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISA 399 (478)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~ 399 (478)
T Consensus 320 ~~~~~~~~~~~h~~~~~~lF~~~~~l~~~~~~-~~~i~~l~Gl~~~~P~~a~~~~i~~lsl~GiPp~~GF~~K~~i~~~~ 398 (478)
T PRK05777 320 GYSAAMFYLLAYLFMTLGAFGVILLLSRKGFE-AESIDDFAGLNKRSPVLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAA 398 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHCHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999999999999999999965797-03099864323249389999999999980885213088999999999
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 96284999999999999999999999999964998778655673-32189999999999999997676589999987519
Q gi|254780867|r 400 VKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVAK-EMRLFIFGSILFVTGYFLIENILNSSIMKIVMSLF 478 (478)
Q Consensus 400 ~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 478 (478)
T Consensus 399 ~~~~~~~l~~~~~~~s~is~~Yylri~~~~f~~~~~~~~~~~~~~~~~~~~~i~a~~~i~~Gi~P~~ll~~~~~aa~~lf 478 (478)
T PRK05777 399 VEAGLWWLAVIGVLNSAIGAFYYLRVIKVMYFDEPEGEPRDAPSNLRLVVLSVSALLVLVLGILPQPLLDLAVQAARLLF 478 (478)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 97484999999999999999999999999932899854467887158999999999999999537999999999999749